Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 38 of 170
Found at i:10632470 original size:88 final size:88
Alignment explanation
Indices: 10632164--10632651 Score: 523
Period size: 87 Copynumber: 5.6 Consensus size: 88
10632154 CTTAGGGAGA
* * * * * * * * *
10632164 CAAGATCTGCTATATTCAATCTGCTTCACTTCAACCGATGGAGGCAAGGCTTGTGTCTTCGATCC
1 CAAGATCTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTAGTATCTTCGATCT
* *
10632229 GCTTCGCTGTCAGTGCAGGAAGG
66 GCTTCGCTGTCAGCGTAGGAAGG
* * * * * *
10632252 CAATATCTACTATCTTCAACCTGCTCCACTGCAACCGAGTGAGGCAAGGCTGGTATCTTTGATCT
1 CAAGATCTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTAGTATCTTCGATCT
* * * * * **
10632317 GCTCCACT-ACTGCTTAGGGCGG
66 GCTTCGCTGTCAGCGTAGGAAGG
* * * * * * *
10632339 CAAGATCCGCTATCTGTAACCTGTTCCACTGCAACCGAAGGAGGCAAGACTGGTACCTTCGATCT
1 CAAGATCTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTAGTATCTTCGATCT
*
10632404 GCTTCGCTGTCAGCGCAGGAAGG
66 GCTTCGCTGTCAGCGTAGGAAGG
* *
10632427 CAAGATCTGCTATCTTTAATCTGCTCCACTGCAACCTAGGGAGGCAAGGCTAGTATCTTCGATCT
1 CAAGATCTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTAGTATCTTCGATCT
* * * * * *
10632492 GCTCCACT-ACTGCTTAGGGAGG
66 GCTTCGCTGTCAGCGTAGGAAGG
* * *
10632514 CAAGATCCGCTATCTTTAACTTGCTCCACTTCAACCGAGGGAGGCAAGGCTAGTATCTTCGATCT
1 CAAGATCTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTAGTATCTTCGATCT
* * * *
10632579 TCTTCGTTGTAAGCATAGGAAGG
66 GCTTCGCTGTCAGCGTAGGAAGG
*
10632602 CAAGATCTGCTATCTTTAACCT-CTCCACTACAACCGAGGGAGGCAAGGCT
1 CAAGATCTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCT
10632652 TTGTTTTCGA
Statistics
Matches: 325, Mismatches: 73, Indels: 5
0.81 0.18 0.01
Matches are distributed among these distances:
87 167 0.51
88 158 0.49
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (88 bp):
CAAGATCTGCTATCTTTAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTAGTATCTTCGATCT
GCTTCGCTGTCAGCGTAGGAAGG
Found at i:10633932 original size:21 final size:21
Alignment explanation
Indices: 10633911--10633963 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 21
10633901 ACCTCTCCAT
10633911 TTTTCCTTTTTC-CTTTTTCA
1 TTTTCCTTTTTCACTTTTTCA
* *
10633931 TTTTCCATTTTCATTTTTTCA
1 TTTTCCTTTTTCACTTTTTCA
*
10633952 CTTTTCGTTTTT
1 -TTTTCCTTTTT
10633964 TTTCTTTGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 11 0.41
21 7 0.26
22 9 0.33
ACGTcount: A:0.08, C:0.21, G:0.02, T:0.70
Consensus pattern (21 bp):
TTTTCCTTTTTCACTTTTTCA
Found at i:10633934 original size:13 final size:13
Alignment explanation
Indices: 10633918--10633947 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
10633908 CATTTTTCCT
*
10633918 TTTTCCTTTTTCA
1 TTTTCCATTTTCA
10633931 TTTTCCATTTTCA
1 TTTTCCATTTTCA
10633944 TTTT
1 TTTT
10633948 TTCACTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.10, C:0.20, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTTCCATTTTCA
Found at i:10634879 original size:27 final size:27
Alignment explanation
Indices: 10634854--10634907 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
10634844 TTTATTTTTA
10634854 TTTT-GATTTTGA-TTGATTTTTC-TT
1 TTTTCGATTTTGACTTGATTTTTCTTT
*
10634878 TTTTCGCTTTTGACTTTGATTTTTCTTT
1 TTTTCGATTTTGAC-TTGATTTTTCTTT
10634906 TT
1 TT
10634908 CTTCTTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
24 4 0.16
25 7 0.28
27 10 0.40
28 4 0.16
ACGTcount: A:0.09, C:0.09, G:0.11, T:0.70
Consensus pattern (27 bp):
TTTTCGATTTTGACTTGATTTTTCTTT
Found at i:10639993 original size:16 final size:15
Alignment explanation
Indices: 10639965--10640000 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
10639955 AACAATATGA
10639965 AATAATAGGAATAAT
1 AATAATAGGAATAAT
*
10639980 AATAATAGCTAATAAT
1 AATAATAG-GAATAAT
10639996 AATAA
1 AATAA
10640001 AAATATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.61, C:0.03, G:0.08, T:0.28
Consensus pattern (15 bp):
AATAATAGGAATAAT
Found at i:10640005 original size:28 final size:26
Alignment explanation
Indices: 10639965--10640019 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 26
10639955 AACAATATGA
**
10639965 AATAATAGGAATAATAATAATAGCTAAT
1 AATAATAAAAATAATAATAA-A-CTAAT
*
10639993 AATAATAAAAATATTAATAAACTAAT
1 AATAATAAAAATAATAATAAACTAAT
10640019 A
1 A
10640020 CTAAACAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 6 0.25
27 1 0.04
28 17 0.71
ACGTcount: A:0.62, C:0.04, G:0.05, T:0.29
Consensus pattern (26 bp):
AATAATAAAAATAATAATAAACTAAT
Found at i:10640236 original size:17 final size:17
Alignment explanation
Indices: 10640204--10640241 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
10640194 AAATGAAACA
*
10640204 AAAATGAAATAAGAGATT
1 AAAATCAAATAAGAGA-T
10640222 AAAATCAAA-AAGAGAT
1 AAAATCAAATAAGAGAT
10640238 AAAA
1 AAAA
10640242 GAACCGGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 5 0.26
17 6 0.32
18 8 0.42
ACGTcount: A:0.68, C:0.03, G:0.13, T:0.16
Consensus pattern (17 bp):
AAAATCAAATAAGAGAT
Found at i:10640500 original size:11 final size:11
Alignment explanation
Indices: 10640471--10640509 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
10640461 TTTCAAAACG
*
10640471 AAAACGAAA-A
1 AAAACAAAATA
*
10640481 AAAATAAAATA
1 AAAACAAAATA
10640492 AAAACAAAATA
1 AAAACAAAATA
10640503 AAAACAA
1 AAAACAA
10640510 GAACCCAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
10 7 0.28
11 18 0.72
ACGTcount: A:0.82, C:0.08, G:0.03, T:0.08
Consensus pattern (11 bp):
AAAACAAAATA
Found at i:10642852 original size:115 final size:112
Alignment explanation
Indices: 10642610--10642829 Score: 291
Period size: 115 Copynumber: 1.9 Consensus size: 112
10642600 AATGGTGAAG
* *
10642610 TAAGTCAAATATTTATAAACCAGAAATATGAACTCTTAAAAAATAATTAAAAATCTCCTAAATAA
1 TAAGTCAAATATTTATAAACCAGAAATATAAACTCTTAAAAAATAATTAAAAATCTCCTAAACAA
** * * **
10642675 ACTTCTAAGTAAGATAAAACTTAAATATCTATTATATATAATGGTGAAC
66 ACTTCTAAGTAAGATAAAACTTAAATATAAACTATAGATAA--GACAAC
*
10642724 TAAGTCAAATATTTATAAATCAGAAATATAAACTCTTAAAAAAATAATTAAAAATCTCCTAAACA
1 TAAGTCAAATATTTATAAACCAGAAATATAAACTCTT-AAAAAATAATTAAAAATCTCCTAAACA
* *
10642789 AACTTGTAAGTAAGATAAAATTCTAAAT-TAAACTA-AGATAA
65 AACTTCTAAGTAAGATAAAACT-TAAATATAAACTATAGATAA
10642830 ACATCTCAAG
Statistics
Matches: 95, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
114 40 0.42
115 50 0.53
116 5 0.05
ACGTcount: A:0.52, C:0.11, G:0.06, T:0.30
Consensus pattern (112 bp):
TAAGTCAAATATTTATAAACCAGAAATATAAACTCTTAAAAAATAATTAAAAATCTCCTAAACAA
ACTTCTAAGTAAGATAAAACTTAAATATAAACTATAGATAAGACAAC
Found at i:10653831 original size:33 final size:32
Alignment explanation
Indices: 10653732--10653837 Score: 133
Period size: 32 Copynumber: 3.3 Consensus size: 32
10653722 TAAAGGAATA
* **
10653732 TTGTTATCATTTAACAAAATGCTAGTTGATAT
1 TTGTTATCATTTTACAAAATGAAAGTTGATAT
*
10653764 TTGTTATCATTTTACAAAATTAAAGTTGCA-AT
1 TTGTTATCATTTTACAAAATGAAAGTTG-ATAT
*
10653796 TTGTTATCTTTTTACAAAATGAAAAGTTGATAT
1 TTGTTATCATTTTACAAAATG-AAAGTTGATAT
*
10653829 TTGCTATCA
1 TTGTTATCA
10653838 GTTAATAAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
32 46 0.73
33 17 0.27
ACGTcount: A:0.35, C:0.09, G:0.11, T:0.44
Consensus pattern (32 bp):
TTGTTATCATTTTACAAAATGAAAGTTGATAT
Found at i:10654784 original size:18 final size:17
Alignment explanation
Indices: 10654763--10654796 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
10654753 TGAATATAAA
10654763 AAACAAAAGGAATATTAC
1 AAACAAAA-GAATATTAC
*
10654781 AAACCAAAGAATATTA
1 AAACAAAAGAATATTA
10654797 GTGGCGATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.62, C:0.12, G:0.09, T:0.18
Consensus pattern (17 bp):
AAACAAAAGAATATTAC
Found at i:10654794 original size:17 final size:17
Alignment explanation
Indices: 10654748--10654796 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
10654738 GCAATTTCAT
* *
10654748 ACCAATGAATATAAAAA
1 ACCAAAGAATATTAAAA
* *
10654765 ACAAAAGGAATATTACAA
1 ACCAAA-GAATATTAAAA
10654783 ACCAAAGAATATTA
1 ACCAAAGAATATTA
10654797 GTGGCGATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 12 0.46
18 14 0.54
ACGTcount: A:0.61, C:0.12, G:0.08, T:0.18
Consensus pattern (17 bp):
ACCAAAGAATATTAAAA
Found at i:10662606 original size:8 final size:8
Alignment explanation
Indices: 10662590--10662639 Score: 50
Period size: 8 Copynumber: 6.4 Consensus size: 8
10662580 TTTATCAATT
10662590 TAAAA-CC
1 TAAAACCC
10662597 TAAAACCC
1 TAAAACCC
*
10662605 T-AAACCT
1 TAAAACCC
10662612 TAAAACCC
1 TAAAACCC
**
10662620 TAAAAAAC
1 TAAAACCC
10662628 TAGAAACCC
1 TA-AAACCC
10662637 TAA
1 TAA
10662640 TATAACAGTG
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
7 11 0.32
8 17 0.50
9 6 0.18
ACGTcount: A:0.54, C:0.28, G:0.02, T:0.16
Consensus pattern (8 bp):
TAAAACCC
Found at i:10662615 original size:15 final size:14
Alignment explanation
Indices: 10662592--10662623 Score: 55
Period size: 15 Copynumber: 2.2 Consensus size: 14
10662582 TATCAATTTA
10662592 AAACCTAAAACCCT
1 AAACCTAAAACCCT
10662606 AAACCTTAAAACCCT
1 AAACC-TAAAACCCT
10662621 AAA
1 AAA
10662624 AAACTAGAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.53, C:0.31, G:0.00, T:0.16
Consensus pattern (14 bp):
AAACCTAAAACCCT
Found at i:10664206 original size:3 final size:3
Alignment explanation
Indices: 10664198--10664254 Score: 59
Period size: 3 Copynumber: 20.0 Consensus size: 3
10664188 TATCACCATT
* *
10664198 ATA ATA ATA A-A AT- ATA ATA ATA ACA ATA ACA ATA ATA ATA ATA TATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA
10664245 A-A ATA A-A ATA
1 ATA ATA ATA ATA
10664255 TTATAATTTA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
2 8 0.18
3 34 0.76
4 3 0.07
ACGTcount: A:0.68, C:0.04, G:0.00, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:10664249 original size:15 final size:16
Alignment explanation
Indices: 10664198--10664261 Score: 71
Period size: 15 Copynumber: 4.1 Consensus size: 16
10664188 TATCACCATT
*
10664198 ATAATAATAAAATATA
1 ATAATAATAATATATA
* *
10664214 ATAATAACAATA-ACA
1 ATAATAATAATATATA
10664229 ATAATAATAATATATA
1 ATAATAATAATATATA
10664245 A-AATAA-AATATTATA
1 ATAATAATAATA-TATA
10664260 AT
1 AT
10664262 TTATTCATAA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
14 4 0.10
15 23 0.57
16 13 0.32
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (16 bp):
ATAATAATAATATATA
Found at i:10671174 original size:9 final size:10
Alignment explanation
Indices: 10671154--10671183 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
10671144 AATTATTTTG
10671154 TATTTGGTTT
1 TATTTGGTTT
10671164 TATTT-GTTT
1 TATTTGGTTT
10671173 TATTTGGTTT
1 TATTTGGTTT
10671183 T
1 T
10671184 GGCATTGGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.10, C:0.00, G:0.17, T:0.73
Consensus pattern (10 bp):
TATTTGGTTT
Found at i:10671733 original size:89 final size:89
Alignment explanation
Indices: 10671580--10671782 Score: 262
Period size: 89 Copynumber: 2.3 Consensus size: 89
10671570 TTTTTAATCC
* * * *
10671580 GCTCCACTACAACTTTAGGGAGATGGGATTAGTAGCTTCAGTCTGCTTCACTGCAACTTCAGGGA
1 GCTCCACTGCAACTTTAGGGAGATAGGATTAGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGA
*
10671645 GATAAGACTCGCTATCTTCAGTCT
66 GATAAGACTCGCCATCTTCAGTCT
* * * * * *
10671669 GCTCCACTGCATCTTTAGGGAGATAGGATTATTGGCTTTAATCTGCTCCAGTGCAACTTTAGGGA
1 GCTCCACTGCAACTTTAGGGAGATAGGATTAGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGA
*
10671734 GATAAGATTCGCCATCTTCAGTCT
66 GATAAGACTCGCCATCTTCAGTCT
* * * *
10671758 GCCCCACTGTAACTTCAGGGGGATA
1 GCTCCACTGCAACTTTAGGGAGATA
10671783 AAACTTGTTT
Statistics
Matches: 97, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
89 97 1.00
ACGTcount: A:0.24, C:0.23, G:0.23, T:0.30
Consensus pattern (89 bp):
GCTCCACTGCAACTTTAGGGAGATAGGATTAGTAGCTTCAATCTGCTCCACTGCAACTTCAGGGA
GATAAGACTCGCCATCTTCAGTCT
Found at i:10671773 original size:134 final size:133
Alignment explanation
Indices: 10671572--10671827 Score: 332
Period size: 134 Copynumber: 1.9 Consensus size: 133
10671562 ATTCATCATT
** * **
10671572 TTTAATCCGCTCCACTACAACTTTAGGGAGATGGGATTAGTAGCTTCAGTCTGCTTCACTGCAAC
1 TTTAATCCGCTCCACTACAACTTTAGGGAGATAAGATTAGCAGCTTCAGTCTGCCCCACTGCAAC
*
10671637 TTCAGGGAGATAAGACTCGCTATCTTCAGTCTGCTCCACTGCATCTTTAGGGAGATAGGATTATT
66 TTCAGGGAGATAAAACTCGCTATCTTCAGTCTGCTCCACTGCATCTTTAGGGAGATAGGATTATT
10671702 GGC
131 GGC
* * * * * *
10671705 TTTAATCTGCTCCAGTGCAACTTTAGGGAGATAAGATTCGCCATCTTCAGTCTGCCCCACTGTAA
1 TTTAATCCGCTCCACTACAACTTTAGGGAGATAAGATTAG-CAGCTTCAGTCTGCCCCACTGCAA
* * * * * * *
10671770 CTTCAGGGGGATAAAACTTGTTTTCTTCAGTTTGCTCCCCTTCATCTTTAGGGAGATA
65 CTTCAGGGAGATAAAACTCGCTATCTTCAGTCTGCTCCACTGCATCTTTAGGGAGATA
10671828 AGACTTGATA
Statistics
Matches: 103, Mismatches: 19, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
133 34 0.33
134 69 0.67
ACGTcount: A:0.23, C:0.23, G:0.21, T:0.32
Consensus pattern (133 bp):
TTTAATCCGCTCCACTACAACTTTAGGGAGATAAGATTAGCAGCTTCAGTCTGCCCCACTGCAAC
TTCAGGGAGATAAAACTCGCTATCTTCAGTCTGCTCCACTGCATCTTTAGGGAGATAGGATTATT
GGC
Found at i:10671834 original size:45 final size:45
Alignment explanation
Indices: 10671580--10671834 Score: 212
Period size: 45 Copynumber: 5.7 Consensus size: 45
10671570 TTTTTAATCC
* ** *
10671580 GCTCCACTACAACTTTAGGGAGATGGGA-TTAG-TAGCTTCAGTCT
1 GCTCCACTGCAACTTTAGGGAGATAAGACTT-GCTATCTTCAGTCT
* * *
10671624 GCTTCACTGCAACTTCAGGGAGATAAGACTCGCTATCTTCAGTCT
1 GCTCCACTGCAACTTTAGGGAGATAAGACTTGCTATCTTCAGTCT
* * ** ** * *
10671669 GCTCCACTGCATCTTTAGGGAGATAGGA-TTATTGGCTTTAATCT
1 GCTCCACTGCAACTTTAGGGAGATAAGACTTGCTATCTTCAGTCT
* *
10671713 GCTCCAGTGCAACTTTAGGGAGATAAGA-TTCGCCATCTTCAGTCT
1 GCTCCACTGCAACTTTAGGGAGATAAGACTT-GCTATCTTCAGTCT
* * * * * * * *
10671758 GCCCCACTGTAACTTCAGGGGGATAAAACTTGTTTTCTTCAGTTT
1 GCTCCACTGCAACTTTAGGGAGATAAGACTTGCTATCTTCAGTCT
* * *
10671803 GCTCCCCTTCATCTTTAGGGAGATAAGACTTG
1 GCTCCACTGCAACTTTAGGGAGATAAGACTTG
10671835 ATATGATCTG
Statistics
Matches: 161, Mismatches: 46, Indels: 7
0.75 0.21 0.03
Matches are distributed among these distances:
44 60 0.37
45 99 0.61
46 2 0.01
ACGTcount: A:0.24, C:0.23, G:0.22, T:0.32
Consensus pattern (45 bp):
GCTCCACTGCAACTTTAGGGAGATAAGACTTGCTATCTTCAGTCT
Found at i:10672032 original size:50 final size:50
Alignment explanation
Indices: 10671945--10672542 Score: 385
Period size: 50 Copynumber: 11.9 Consensus size: 50
10671935 AGTCTAATTA
* * *
10671945 ACTGCAATGTCGGGGAAGTAAGATTCGCTATTGTAGCTTCAATCTGTTCC
1 ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* ** * * **
10671995 ACTACGCTGCCAGGGAAGTAAAATTCGCTGTTGTAGCTTCAATCTTTTTA
1 ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * *
10672045 ACTGCAATGTCAGGGAGGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
1 ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * * * * * **
10672095 ACTGCATTGCCAGGGAGGTAAGATTTGCCGTTGTGGCTTCAATCTTTTTA
1 ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * * * *
10672145 ACTACAATGTCGGGGAAGCAAGATTTGCTGTTGTAGCTTCAATCTGTTCC
1 ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
** * * * * * **
10672195 ACTGCACCGCCAGGGAAGTAAGATTCACCGTTGTGGCTTCAATATTTTTA
1 ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * * * * ** * * **
10672245 ATTGCAATGTCAAGGAAGCAAGATTTGCCATTGTGGCTTCAATCTTTTTA
1 ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * * * * *
10672295 ATTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCC
1 ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* ** * * * **
10672345 ACTGTACCGCTAGGGAAGTAAGATTCG-TAGTTGTGGCTTCAATCTTTTTA
1 ACTGCAATGCCAGGGAAGTAAGATTCGCT-GTTGTAGCTTCAATCTGTTCC
* * * * * * **
10672395 ATTGCAATGTC-GGGAAGCAAGATTCGCCGTCCGTTGTGGCTTTAATCTTTTTA
1 ACTGCAATGCCAGGGAAGTAAGATTCG-C-T--GTTGTAGCTTCAATCTGTTCC
* * * * * **
10672448 ATTACAATGTC-GGGAAAGCAAGATTCACCATTGTAGCTTCAATCTGTTCC
1 ACTGCAATGCCAGGG-AAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
* * * * *
10672498 ACTGC-ATCGCCAGAGAAGTAAGATTTGCCGTTTTGGCTTCAATCT
1 ACTGCAAT-GCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCT
10672543 TTTTAATGGC
Statistics
Matches: 427, Mismatches: 113, Indels: 16
0.77 0.20 0.03
Matches are distributed among these distances:
49 16 0.04
50 363 0.85
51 2 0.00
52 1 0.00
53 34 0.08
54 11 0.03
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (50 bp):
ACTGCAATGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTCAATCTGTTCC
Found at i:10672079 original size:100 final size:100
Alignment explanation
Indices: 10671942--10672548 Score: 603
Period size: 100 Copynumber: 6.0 Consensus size: 100
10671932 TTTAGTCTAA
* * * *
10671942 TTAACTGCAATGTCGGGGAAGTAAGATTCGCTATTGTAGCTTCAATCTGTTCCACTACGCTGCCA
1 TTAACTGCAATGTCAGGGAAGCAAGATTCGCTATTGTAGCTTCAATCTGTTCCACTGCACTGCCA
* * *
10672007 GGGAAGTAAAATTCGCTGTTGTAGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * *
10672042 TTAACTGCAATGTCAGGGAGGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCCACTGCATTGCCA
1 TTAACTGCAATGTCAGGGAAGCAAGATTCGCTATTGTAGCTTCAATCTGTTCCACTGCACTGCCA
* *
10672107 GGGAGGTAAGATTTGCCGTTGTGGCTTCAATCTTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * * *
10672142 TTAACTACAATGTCGGGGAAGCAAGATTTGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCA
1 TTAACTGCAATGTCAGGGAAGCAAGATTCGCTATTGTAGCTTCAATCTGTTCCACTGCACTGCCA
* *
10672207 GGGAAGTAAGATTCACCGTTGTGGCTTCAATATTT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
* * * * * * ** * * * *
10672242 TTAATTGCAATGTCAAGGAAGCAAGATTTGCCATTGTGGCTTCAATCTTTTTAATTGCAATGTCG
1 TTAACTGCAATGTCAGGGAAGCAAGATTCGCTATTGTAGCTTCAATCTGTTCCACTGCACTGCCA
* * *
10672307 GGGAAGCAAGATTCGCCGTTGTAGCTTCAATCTAT
66 GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
** * ** * * * ** * * *
10672342 TCCACTGTACCG-CTAGGGAAGTAAGATTCG-TAGTTGTGGCTTCAATCTTTTTAATTGCAATGT
1 TTAACTGCAATGTC-AGGGAAGCAAGATTCGCTA-TTGTAGCTTCAATCTGTTCCACTGCACTGC
* *
10672405 C-GGGAAGCAAGATTCGCCGTCCGTTGTGGCTTTAATCTTT
64 CAGGGAAGTAAGATT---CG-CCGTTGTGGCTTCAATCTTT
* * * *
10672445 TTAATTACAATGTC-GGGAAAGCAAGATTCACCATTGTAGCTTCAATCTGTTCCACTGCA-TCGC
1 TTAACTGCAATGTCAGGG-AAGCAAGATTCGCTATTGTAGCTTCAATCTGTTCCACTGCACT-GC
* * *
10672508 CAGAGAAGTAAGATTTGCCGTTTTGGCTTCAATCTTT
64 CAGGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
10672545 TTAA
1 TTAA
10672549 TGGCAACCTC
Statistics
Matches: 420, Mismatches: 76, Indels: 22
0.81 0.15 0.04
Matches are distributed among these distances:
99 15 0.04
100 330 0.79
101 1 0.00
102 6 0.01
103 55 0.13
104 13 0.03
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (100 bp):
TTAACTGCAATGTCAGGGAAGCAAGATTCGCTATTGTAGCTTCAATCTGTTCCACTGCACTGCCA
GGGAAGTAAGATTCGCCGTTGTGGCTTCAATCTTT
Found at i:10672162 original size:150 final size:150
Alignment explanation
Indices: 10671944--10672540 Score: 485
Period size: 150 Copynumber: 4.0 Consensus size: 150
10671934 TAGTCTAATT
* ** * * * * * ** ** * *
10671944 AACTGCAATGTCGGGGAAGTAAGATTCGCTATTGTAGCTTCAATCTGTTCCACTACGCTGCCAGG
1 AACTGCAATGCCAAGGAAGCAAGATTTGCCATTGTGGCTTCAATCTTTTTAACTACAATGTCGGG
* * * * * * * * *
10672009 GAAGTAAAATTCGCTGTTGTAGCTTCAATCTTTTTAACTGCAATGTCAGGGAGGCAAGATTCGCT
66 GAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTGCAACGCCAGGGAAGCAAGATTCACC
*
10672074 GTTGTAGCTTCAATCTGTTC
131 GTTGTAGCTTCAATATGTTC
* * * * * *
10672094 CACTGCATTGCCAGGGAGGTAAGATTTGCCGTTGTGGCTTCAATCTTTTTAACTACAATGTCGGG
1 AACTGCAATGCCAAGGAAGCAAGATTTGCCATTGTGGCTTCAATCTTTTTAACTACAATGTCGGG
* * * *
10672159 GAAGCAAGATTTGCTGTTGTAGCTTCAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCACC
66 GAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTGCAACGCCAGGGAAGCAAGATTCACC
* * *
10672224 GTTGTGGCTTCAATATTTTT
131 GTTGTAGCTTCAATATGTTC
* * * *
10672244 AATTGCAATGTCAAGGAAGCAAGATTTGCCATTGTGGCTTCAATCTTTTTAATTGCAATGTCGGG
1 AACTGCAATGCCAAGGAAGCAAGATTTGCCATTGTGGCTTCAATCTTTTTAACTACAATGTCGGG
* * * * * * * ***
10672309 GAAGCAAGATTCGCCGTTGTAGCTTCAATCTATTCCACTGTACCGCTAGGGAAGTAAGATTCGTA
66 GAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTGCAACGCCAGGGAAGCAAGATTCACC
* * * *
10672374 GTTGTGGCTTCAATCTTTTT
131 GTTGTAGCTTCAATATGTTC
* * * * * * *
10672394 AATTGCAATGTC-GGGAAGCAAGATTCGCCGTCCGTTGTGGCTTTAATCTTTTTAATTACAATGT
1 AACTGCAATGCCAAGGAAGCAAGATT---TG-CCATTGTGGCTTCAATCTTTTTAACTACAATGT
* * ** * * * *
10672458 CGGGAAAGCAAGATTCACCATTGTAGCTTCAATCTGTTCCACTGCATCGCCAGAGAAGTAAGATT
62 CGGGGAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTGCAACGCCAGGGAAGCAAGATT
** * *
10672523 TGCCGTTTTGGCTTCAAT
127 CACCGTTGTAGCTTCAAT
10672541 CTTTTTAATG
Statistics
Matches: 374, Mismatches: 69, Indels: 5
0.83 0.15 0.01
Matches are distributed among these distances:
149 12 0.03
150 260 0.70
152 1 0.00
153 101 0.27
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (150 bp):
AACTGCAATGCCAAGGAAGCAAGATTTGCCATTGTGGCTTCAATCTTTTTAACTACAATGTCGGG
GAAGCAAGATTCGCTGTTGTAGCTTCAATCTGTTCAACTGCAACGCCAGGGAAGCAAGATTCACC
GTTGTAGCTTCAATATGTTC
Found at i:10676673 original size:23 final size:24
Alignment explanation
Indices: 10676631--10676687 Score: 64
Period size: 24 Copynumber: 2.4 Consensus size: 24
10676621 GGGCTCTTTC
*
10676631 ATGAAATTTAATGCAAATG-ATGCA
1 ATGAAATGT-ATGCAAATGAATGCA
* *
10676655 ATGAAATGTATGCAGATGAATGGA
1 ATGAAATGTATGCAAATGAATGCA
10676679 ATG-AATGTA
1 ATGAAATGTA
10676688 AAAAGAGACG
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
23 14 0.48
24 15 0.52
ACGTcount: A:0.44, C:0.05, G:0.23, T:0.28
Consensus pattern (24 bp):
ATGAAATGTATGCAAATGAATGCA
Found at i:10680043 original size:9 final size:10
Alignment explanation
Indices: 10680023--10680052 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
10680013 AATTATTTTG
10680023 TATTTGGTTT
1 TATTTGGTTT
10680033 TATTT-GTTT
1 TATTTGGTTT
10680042 TATTTGGTTT
1 TATTTGGTTT
10680052 T
1 T
10680053 GACATTGGGC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.10, C:0.00, G:0.17, T:0.73
Consensus pattern (10 bp):
TATTTGGTTT
Found at i:10687451 original size:21 final size:20
Alignment explanation
Indices: 10687418--10687456 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
10687408 AAATTTTCAG
* *
10687418 AAATTTTATGATTTTTTTAA
1 AAATTTTAAGATTATTTTAA
10687438 AAATTATTAAGATTATTTT
1 AAATT-TTAAGATTATTTT
10687457 CCATTTTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 5 0.31
21 11 0.69
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (20 bp):
AAATTTTAAGATTATTTTAA
Found at i:10689232 original size:29 final size:28
Alignment explanation
Indices: 10689199--10689255 Score: 96
Period size: 29 Copynumber: 2.0 Consensus size: 28
10689189 ATGTTAGAAA
10689199 AAACAGAGTTGAAAATGGAAAAAATGTAT
1 AAACAGAGTTGAAAATGG-AAAAATGTAT
*
10689228 AAACAGCGTTGAAAATGGAAAAATGTAT
1 AAACAGAGTTGAAAATGGAAAAATGTAT
10689256 GTATAATGTG
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 10 0.37
29 17 0.63
ACGTcount: A:0.53, C:0.05, G:0.21, T:0.21
Consensus pattern (28 bp):
AAACAGAGTTGAAAATGGAAAAATGTAT
Found at i:10695429 original size:234 final size:234
Alignment explanation
Indices: 10694996--10695671 Score: 1149
Period size: 234 Copynumber: 2.9 Consensus size: 234
10694986 TCGATGTAAA
* * *
10694996 TTTAGTTTGACCGTTGGATTTG-GGGAGCTCAACTATAAATAGAGAGCCTCCGCCTTAGTTGTAA
1 TTTAGTTTGACCGTTGGATTTGAGAGAGCTCAACTATAAATAGAGAGCCTCCCCCTCAGTTGTAA
* *
10695060 ATCATTCATTGTTTCTGTATTCTTTAAAAAAGTGAATACAATTGAGAGCATTTACTCAAACACCT
66 ATCATTCATTGTTTCTGTATTCTTTGATAAAGTGAATACAATTGAGAGCATTTACTCAAACACCT
*
10695125 CTCGTGCATAGTTTTTATGGCTATTCTGTTATCTAAGCATTATTTTGTCTTTATGTTGCTTTCGC
131 CTCGTGCATAGTTTTTATGGCTATTCTGTTATCTAAGCATTATTTTGTCTTTGTGTTGCTTTCGC
10695190 TATATAAATTGGTTTGAATGCTTTTGTTTTTAAGCATTC
196 TATATAAATTGGTTTGAATGCTTTTGTTTTTAAGCATTC
* *
10695229 TTTAGTTTGACTGTTGAATTTGAGAGAGCTCAACTATAAATAGAGAGCCTCCCCCTCAGTTGTAA
1 TTTAGTTTGACCGTTGGATTTGAGAGAGCTCAACTATAAATAGAGAGCCTCCCCCTCAGTTGTAA
10695294 ATCATTCATTGTTTCTGTATTCTTTGATAAAGTGAATACAATTGAGAGCATTTACTCAAACACCT
66 ATCATTCATTGTTTCTGTATTCTTTGATAAAGTGAATACAATTGAGAGCATTTACTCAAACACCT
10695359 CTCGTGCATAGTTTTTATGGCTATTCTGTTATCTAAGCATTATTTTGTCTTTGTGTTGCTTTCGC
131 CTCGTGCATAGTTTTTATGGCTATTCTGTTATCTAAGCATTATTTTGTCTTTGTGTTGCTTTCGC
* *
10695424 TATATAAATTGGTTTGGATGTTTTTGTTTTTAAGCATTC
196 TATATAAATTGGTTTGAATGCTTTTGTTTTTAAGCATTC
*
10695463 TTTAGTTTGACCGTTGGATTTGAGAGAGCTCAACTATAATTAGAGAGCCTCCCCCTCAGTTGTAA
1 TTTAGTTTGACCGTTGGATTTGAGAGAGCTCAACTATAAATAGAGAGCCTCCCCCTCAGTTGTAA
* *
10695528 ATCA-TCTATTGTTTCTGTATTCTTTGATAAAGTGAAAACAATTGAGAGCATTTAATCAAACACC
66 ATCATTC-ATTGTTTCTGTATTCTTTGATAAAGTGAATACAATTGAGAGCATTTACTCAAACACC
* * * * * *
10695592 TCTCGTGCATAGTTTTTTATCGTTATTCTGTTCTTTAAGCATTCTTTTATCTTTGTGTTGCTTTC
130 TCTCGTGCATAG-TTTTTATGGCTATTCTGTTATCTAAGCATTATTTTGTCTTTGTGTTGCTTTC
10695657 GCTATATAAATTGGT
194 GCTATATAAATTGGT
10695672 GCCTTGGAGG
Statistics
Matches: 419, Mismatches: 21, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
233 22 0.05
234 336 0.80
235 61 0.15
ACGTcount: A:0.25, C:0.16, G:0.17, T:0.42
Consensus pattern (234 bp):
TTTAGTTTGACCGTTGGATTTGAGAGAGCTCAACTATAAATAGAGAGCCTCCCCCTCAGTTGTAA
ATCATTCATTGTTTCTGTATTCTTTGATAAAGTGAATACAATTGAGAGCATTTACTCAAACACCT
CTCGTGCATAGTTTTTATGGCTATTCTGTTATCTAAGCATTATTTTGTCTTTGTGTTGCTTTCGC
TATATAAATTGGTTTGAATGCTTTTGTTTTTAAGCATTC
Found at i:10699831 original size:6 final size:6
Alignment explanation
Indices: 10699823--10699857 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
10699813 AAAAAAAACC
*
10699823 TCAAAC TCAAAA TCAAAA TCAAAA TCAAAA TCAAA
1 TCAAAA TCAAAA TCAAAA TCAAAA TCAAAA TCAAA
10699858 TGTTCTTTCC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.63, C:0.20, G:0.00, T:0.17
Consensus pattern (6 bp):
TCAAAA
Found at i:10717969 original size:33 final size:32
Alignment explanation
Indices: 10717921--10718078 Score: 136
Period size: 33 Copynumber: 4.8 Consensus size: 32
10717911 TTCGTAGTGT
* *
10717921 CATAACCCAGTTATGGTCTTATCATCAGAATGC
1 CATAGCCCAGCTATGGTCTTA-CATCAGAATGC
* *
10717954 CATAGCCCAGCTATGGTCTTACATATAAACACTGC
1 CATAGCCCAGCTATGGTCTTACAT-CAGA-A-TGC
* * * * * * *
10717989 CATTGTCCAACCATGGTCTTACATTCATAGTGT
1 CATAGCCCAGCTATGGTCTTACA-TCAGAATGC
* **
10718022 CATAACCCAATTATGGTCTTATCATCAGAATGC
1 CATAGCCCAGCTATGGTCTTA-CATCAGAATGC
10718055 CATAGCCCAGCTATGGTCTTACAT
1 CATAGCCCAGCTATGGTCTTACAT
10718079 ATAAACACTG
Statistics
Matches: 97, Mismatches: 23, Indels: 11
0.74 0.18 0.08
Matches are distributed among these distances:
32 6 0.06
33 63 0.65
34 3 0.03
35 24 0.25
36 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.30
Consensus pattern (32 bp):
CATAGCCCAGCTATGGTCTTACATCAGAATGC
Found at i:10718081 original size:101 final size:101
Alignment explanation
Indices: 10717906--10718145 Score: 426
Period size: 101 Copynumber: 2.4 Consensus size: 101
10717896 AATTCATCCT
*
10717906 TTACATTCGTAGTGTCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
1 TTACATTCATAGTGTCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
*
10717971 CTTACATATAAACACTGCCATTGTCCAACCATGGTC
66 CTTACATATAAACACTGCCATGGTCCAACCATGGTC
*
10718007 TTACATTCATAGTGTCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
1 TTACATTCATAGTGTCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
*
10718072 CTTACATATAAACACTGCCATGGTCCAGCCATGGTC
66 CTTACATATAAACACTGCCATGGTCCAACCATGGTC
**
10718108 TTATGTTCATAGTGTCATAACCCAGTTATGGTCTTATC
1 TTACATTCATAGTGTCATAACCCAGTTATGGTCTTATC
10718146 CGTCAATTCA
Statistics
Matches: 132, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
101 132 1.00
ACGTcount: A:0.28, C:0.25, G:0.16, T:0.32
Consensus pattern (101 bp):
TTACATTCATAGTGTCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
CTTACATATAAACACTGCCATGGTCCAACCATGGTC
Found at i:10718100 original size:35 final size:34
Alignment explanation
Indices: 10717921--10718110 Score: 129
Period size: 33 Copynumber: 5.6 Consensus size: 34
10717911 TTCGTAGTGT
* * * *
10717921 CATAACCCAGTTATGGTCTTATCATCAGA-A-TGC
1 CATAGCCCAGCTATGGTCTTA-CATTAAACACTGC
10717954 CATAGCCCAGCTATGGTCTTACATATAAACACTGC
1 CATAGCCCAGCTATGGTCTTACAT-TAAACACTGC
* * * * * * * *
10717989 CATTGTCCAACCATGGTCTTACATT-CATAGTGT
1 CATAGCCCAGCTATGGTCTTACATTAAACACTGC
* ** * *
10718022 CATAACCCAATTATGGTCTTATCATCAGA-A-TGC
1 CATAGCCCAGCTATGGTCTTA-CATTAAACACTGC
10718055 CATAGCCCAGCTATGGTCTTACATATAAACACTGC
1 CATAGCCCAGCTATGGTCTTACAT-TAAACACTGC
* * *
10718090 CATGGTCCAGCCATGGTCTTA
1 CATAGCCCAGCTATGGTCTTA
10718111 TGTTCATAGT
Statistics
Matches: 121, Mismatches: 28, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
32 6 0.05
33 63 0.52
34 7 0.06
35 45 0.37
ACGTcount: A:0.29, C:0.26, G:0.15, T:0.29
Consensus pattern (34 bp):
CATAGCCCAGCTATGGTCTTACATTAAACACTGC
Found at i:10722234 original size:16 final size:16
Alignment explanation
Indices: 10722204--10722237 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
10722194 CCAACTGCTC
10722204 AAAAATGAAACACAAA
1 AAAAATGAAACACAAA
10722220 AAAAGATGAAA-ACAAA
1 AAAA-ATGAAACACAAA
10722236 AA
1 AA
10722238 TCCAAAGACG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.76, C:0.09, G:0.09, T:0.06
Consensus pattern (16 bp):
AAAAATGAAACACAAA
Found at i:10722821 original size:13 final size:13
Alignment explanation
Indices: 10722786--10722822 Score: 65
Period size: 14 Copynumber: 2.8 Consensus size: 13
10722776 GAGATATTTG
10722786 TAATTTGAAAACT
1 TAATTTGAAAACT
10722799 TAAGTTTGAAAACT
1 TAA-TTTGAAAACT
10722813 TAATTTGAAA
1 TAATTTGAAA
10722823 TTTTGGAAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 10 0.43
14 13 0.57
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (13 bp):
TAATTTGAAAACT
Found at i:10722832 original size:21 final size:20
Alignment explanation
Indices: 10722803--10722859 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 20
10722793 AAAACTTAAG
*
10722803 TTTGAAAACTTAATTTGAAAT
1 TTTGAAAACTTAAATT-AAAT
*
10722824 TTTGGAAACTTAAAAATTAAAT
1 TTTGAAAACTT--AAATTAAAT
*
10722846 TTTGTAAACTTAAA
1 TTTGAAAACTTAAA
10722860 AATTTTGAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
20 3 0.10
21 10 0.32
22 14 0.45
23 4 0.13
ACGTcount: A:0.46, C:0.05, G:0.09, T:0.40
Consensus pattern (20 bp):
TTTGAAAACTTAAATTAAAT
Found at i:10722845 original size:22 final size:22
Alignment explanation
Indices: 10722820--10722863 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
10722810 ACTTAATTTG
10722820 AAATTTTGGAAACTTAAAAATT
1 AAATTTTGGAAACTTAAAAATT
*
10722842 AAATTTTGTAAACTTAAAAATT
1 AAATTTTGGAAACTTAAAAATT
10722864 TTGAGAAACT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.39
Consensus pattern (22 bp):
AAATTTTGGAAACTTAAAAATT
Found at i:10722901 original size:22 final size:22
Alignment explanation
Indices: 10722862--10722904 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
10722852 AACTTAAAAA
*
10722862 TTTTGAGAAACTTTGAGAAACT
1 TTTTGAGAAAATTTGAGAAACT
10722884 TTTTG-GAAAATTTGGAGAAAC
1 TTTTGAGAAAATTT-GAGAAAC
10722905 AACTCAAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (22 bp):
TTTTGAGAAAATTTGAGAAACT
Found at i:10723145 original size:34 final size:34
Alignment explanation
Indices: 10723098--10723178 Score: 119
Period size: 34 Copynumber: 2.4 Consensus size: 34
10723088 TCTTTTTCTT
* *
10723098 ATATTTTCTTGCAGGGAATATTTCCTGTTCACGC
1 ATATTTTCTTGCAGGGAATATTCCCTGTTCACAC
*
10723132 ATCA-TTTCTTGCAGGGAATCTTCCCTGTTCACAC
1 AT-ATTTTCTTGCAGGGAATATTCCCTGTTCACAC
10723166 ATATTTTCTTGCA
1 ATATTTTCTTGCA
10723179 TCATTTCTTC
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
33 1 0.02
34 40 0.95
35 1 0.02
ACGTcount: A:0.21, C:0.23, G:0.15, T:0.41
Consensus pattern (34 bp):
ATATTTTCTTGCAGGGAATATTCCCTGTTCACAC
Found at i:10726025 original size:21 final size:23
Alignment explanation
Indices: 10725986--10726031 Score: 62
Period size: 21 Copynumber: 2.1 Consensus size: 23
10725976 GAACAAATTG
10725986 TTGATTCTATTTCTTTTTTG-AT
1 TTGATTCTATTTCTTTTTTGTAT
10726008 TTGA-TCTA-TTCTTTTTTTGTAT
1 TTGATTCTATTTC-TTTTTTGTAT
10726030 TT
1 TT
10726032 CTCTCTTTCC
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 3 0.14
21 11 0.50
22 8 0.36
ACGTcount: A:0.13, C:0.09, G:0.09, T:0.70
Consensus pattern (23 bp):
TTGATTCTATTTCTTTTTTGTAT
Found at i:10734426 original size:21 final size:22
Alignment explanation
Indices: 10734386--10734426 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
10734376 ATTAATCATA
*
10734386 AAAAGAAGCAAATCTCTTTTCT
1 AAAAGAAGCAAATATCTTTTCT
*
10734408 AAAAGAAG-AAATATGTTTT
1 AAAAGAAGCAAATATCTTTT
10734427 AAAAAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.32
Consensus pattern (22 bp):
AAAAGAAGCAAATATCTTTTCT
Found at i:10734432 original size:21 final size:22
Alignment explanation
Indices: 10734385--10734432 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
10734375 AATTAATCAT
* *
10734385 AAAAAGAAGCAAATCTCTTTTC
1 AAAAAGAAGCAAATATCTTTTA
* *
10734407 TAAAAGAAG-AAATATGTTTTA
1 AAAAAGAAGCAAATATCTTTTA
10734428 AAAAA
1 AAAAA
10734433 TTAACTGAAC
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.54, C:0.08, G:0.10, T:0.27
Consensus pattern (22 bp):
AAAAAGAAGCAAATATCTTTTA
Found at i:10734488 original size:20 final size:23
Alignment explanation
Indices: 10734458--10734502 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 23
10734448 GGAAAAAGAG
10734458 AAATACAAAAAAG-AATAG-ATC
1 AAATACAAAAAAGAAATAGAATC
10734479 AAAT-CAAAAAAGAAATAGAATC
1 AAATACAAAAAAGAAATAGAATC
10734501 AA
1 AA
10734503 CAATTTGTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.36
21 9 0.41
22 5 0.23
ACGTcount: A:0.69, C:0.09, G:0.09, T:0.13
Consensus pattern (23 bp):
AAATACAAAAAAGAAATAGAATC
Found at i:10741986 original size:218 final size:218
Alignment explanation
Indices: 10741714--10742117 Score: 693
Period size: 218 Copynumber: 1.9 Consensus size: 218
10741704 TGCACCGCCT
* **
10741714 GGGAAATAAGATTCGCTATCTTCAATCTGCCCCACTGCAACTTCAGGGGGATAAGACCTGCTTAC
1 GGGAAATAAGATTCGCCATCTTCAATCTGCCCCACTGCAACTTCAGAAGGATAAGACCTGCTTAC
* * *
10741779 TCAGTCTGTTCCGCTGCAACTTCAGGGAGATAAGACCTGATGCGATCCACTCTACTGCAACTTCA
66 TCAGTCTGCTCCGCTGCAACTTCAAGGAGATAAGACCTGATGCAATCCACTCTACTGCAACTTCA
*
10741844 GAGAGATAAGATCTATAACTTTAATCC-GCTCCACTACTACTTCAGGGAGATAGGATTATCGGCT
131 GAGAGATAAGATCTATAACTTTAA-CCTGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCT
10741908 TCAATCTGCTCCACTGTAACTTCA
195 TCAATCTGCTCCACTGTAACTTCA
* * *
10741932 GGGAGATAAGATTTGCCATCTTCGATCTGCCCCACTGCAACTTCAGAAGGATAAGACCTGCTTAC
1 GGGAAATAAGATTCGCCATCTTCAATCTGCCCCACTGCAACTTCAGAAGGATAAGACCTGCTTAC
10741997 TCAGTCTGCTCCGCTGCAACTTCAAGGAGATAAGACCTGATGCAATCCACTCTACTGCAACTTCA
66 TCAGTCTGCTCCGCTGCAACTTCAAGGAGATAAGACCTGATGCAATCCACTCTACTGCAACTTCA
*
10742062 GAGAGATAAGATCTATTACTTTAACCTGCTCCACTACAACTTCAGGGAGATAGGAT
131 GAGAGATAAGATCTATAACTTTAACCTGCTCCACTACAACTTCAGGGAGATAGGAT
10742118 CTGTAATTTC
Statistics
Matches: 174, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
217 2 0.01
218 172 0.99
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (218 bp):
GGGAAATAAGATTCGCCATCTTCAATCTGCCCCACTGCAACTTCAGAAGGATAAGACCTGCTTAC
TCAGTCTGCTCCGCTGCAACTTCAAGGAGATAAGACCTGATGCAATCCACTCTACTGCAACTTCA
GAGAGATAAGATCTATAACTTTAACCTGCTCCACTACAACTTCAGGGAGATAGGATTATCGGCTT
CAATCTGCTCCACTGTAACTTCA
Found at i:10742106 original size:44 final size:44
Alignment explanation
Indices: 10741832--10742119 Score: 162
Period size: 44 Copynumber: 6.6 Consensus size: 44
10741822 GATCCACTCT
* *
10741832 ACTGCAACTTCAGAGAGATAAGATCTATAACTTTAATCC-GCTCC
1 ACTGCAACTTCAGAGAGATAAGATCTATTACTTCAA-CCTGCTCC
* * * * ** *
10741876 ACTACTACTTCAGGGAGATAGGAT-TATCGGCTTCAATCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATCTAT-TACTTCAACCTGCTCC
* * * *** * * *
10741920 ACTGTAACTTCAGGGAGATAAGATTTGCCATCTTCGATCTGCCCC
1 ACTGCAACTTCAGAGAGATAAGATCTATTA-CTTCAACCTGCTCC
* * **
10741965 ACTGCAACTTCAGA-AGGATAAGACCTGCTTAC-TCAGTCTGCTCC
1 ACTGCAACTTCAGAGA-GATAAGATCT-ATTACTTCAACCTGCTCC
* * * * * *
10742009 GCTGCAACTTCA-AGGAGATAAGA-C-CTGA-TGCAATCC-ACTCT
1 ACTGCAACTTCAGA-GAGATAAGATCTATTACTTCAA-CCTGCTCC
*
10742050 ACTGCAACTTCAGAGAGATAAGATCTATTACTTTAACCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATCTATTACTTCAACCTGCTCC
* * *
10742094 ACTACAACTTCAGGGAGATAGGATCT
1 ACTGCAACTTCAGAGAGATAAGATCT
10742120 GTAATTTCCC
Statistics
Matches: 184, Mismatches: 45, Indels: 30
0.71 0.17 0.12
Matches are distributed among these distances:
41 28 0.15
42 3 0.02
43 10 0.05
44 107 0.58
45 35 0.19
46 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
ACTGCAACTTCAGAGAGATAAGATCTATTACTTCAACCTGCTCC
Found at i:10742294 original size:128 final size:129
Alignment explanation
Indices: 10742105--10742524 Score: 655
Period size: 128 Copynumber: 3.3 Consensus size: 129
10742095 CTACAACTTC
* * * *
10742105 AGGGAGATAGGATCTGTAATTTCCCAACCTATTCCACTGCTAACCAGGAATATAGGACTTGTGGC
1 AGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGC
* * *
10742170 TTAAATCAGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTTGATCTGCTCCGCTATTTCTT
66 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTATTGCTT
*
10742234 AGGGAGACAAGATCTGTGATTT-CCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGC
1 AGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGC
* * * *
10742298 TTAAATCTGCTTCCTTACTCTTGAAGATAAGATTTGCC-ACTTCGATCTGCTCCGCTACTGCTT
66 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTATTGCTT
* * * *
10742361 AGGGATACAAGATCTGTAATTTCCCAACCTATTCCATTGTTGACCAGGGATATAGGAATTGTGGC
1 AGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGC
*
10742426 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGTCGTCTTCGATCTGCTCCGCTATTGCTT
66 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTATTGCTT
*
10742490 AGGGAGACAAGATCTGTAATTTCCCAGATCTATTC
1 AGGGAGACAAGATCTGTAATTTCCCA-ACCTATTC
10742525 TCTGGGGAAC
Statistics
Matches: 264, Mismatches: 24, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
127 41 0.16
128 149 0.56
129 67 0.25
130 7 0.03
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (129 bp):
AGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGC
TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTATTGCTT
Found at i:10744666 original size:6 final size:6
Alignment explanation
Indices: 10744657--10744718 Score: 51
Period size: 6 Copynumber: 10.7 Consensus size: 6
10744647 CTTTTAATTT
* * *
10744657 TTTTGA TTTTGA TTTTGA TTGATT-T TTTTCA TTTT-- TTTT-A CTTTGA
1 TTTTGA TTTTGA TTTTGA TT--TTGA TTTTGA TTTTGA TTTTGA TTTTGA
10744703 TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTT
10744719 TTCTTTTTCT
Statistics
Matches: 47, Mismatches: 4, Indels: 10
0.77 0.07 0.16
Matches are distributed among these distances:
4 4 0.09
5 5 0.11
6 34 0.72
7 2 0.04
8 2 0.04
ACGTcount: A:0.15, C:0.03, G:0.11, T:0.71
Consensus pattern (6 bp):
TTTTGA
Found at i:10744672 original size:40 final size:38
Alignment explanation
Indices: 10744623--10744735 Score: 129
Period size: 40 Copynumber: 2.8 Consensus size: 38
10744613 TGGCCTCTCC
* *
10744623 TTTTTATTTTTATTTTTCTTTTTTCTTTTAATTTT-TTTGA
1 TTTTGATTTTGATTTTT-TTTTTTCTTTT--TTTTATTTGA
**
10744663 TTTTGATTTTGATTGATTTTTTTCATTTTTTTTACTTTGA
1 TTTTGATTTTGATTTTTTTTTTTC-TTTTTTTTA-TTTGA
10744703 TTTTGATTTTGATTTTTTCTTTTTCTTTTTTTT
1 TTTTGATTTTGATTTTTT-TTTTTCTTTTTTTT
10744736 TTGAATCAGA
Statistics
Matches: 63, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
38 4 0.06
39 7 0.11
40 46 0.73
41 6 0.10
ACGTcount: A:0.12, C:0.05, G:0.06, T:0.77
Consensus pattern (38 bp):
TTTTGATTTTGATTTTTTTTTTTCTTTTTTTTATTTGA
Found at i:10744691 original size:34 final size:35
Alignment explanation
Indices: 10744648--10744720 Score: 103
Period size: 34 Copynumber: 2.1 Consensus size: 35
10744638 TTCTTTTTTC
*
10744648 TTTTAATTTTTTTGATTTTGATTTTGA-TTGATTT
1 TTTTAATTTTTTTGACTTTGATTTTGATTTGATTT
* *
10744682 TTTTCATTTTTTTTACTTTGATTTTGATTTTGATTT
1 TTTTAATTTTTTTGACTTTGATTTTGA-TTTGATTT
10744718 TTT
1 TTT
10744721 CTTTTTCTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
34 24 0.71
36 10 0.29
ACGTcount: A:0.15, C:0.03, G:0.10, T:0.73
Consensus pattern (35 bp):
TTTTAATTTTTTTGACTTTGATTTTGATTTGATTT
Found at i:10758089 original size:18 final size:17
Alignment explanation
Indices: 10758068--10758119 Score: 52
Period size: 18 Copynumber: 2.9 Consensus size: 17
10758058 TTTATACATA
10758068 TATTTTAAAT-TTAATATG
1 TATTTTAAATATT--TATG
*
10758086 TATTTAAAATATTTATG
1 TATTTTAAATATTTATG
*
10758103 TATTTTTATATATTTAT
1 TA-TTTTAAATATTTAT
10758120 TTTAATTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 6 0.21
18 21 0.72
19 2 0.07
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.60
Consensus pattern (17 bp):
TATTTTAAATATTTATG
Found at i:10761750 original size:14 final size:14
Alignment explanation
Indices: 10761731--10761757 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10761721 CATTTCTTGG
10761731 TCGGTTCAGTTCAC
1 TCGGTTCAGTTCAC
10761745 TCGGTTCAGTTCA
1 TCGGTTCAGTTCA
10761758 ACTGGATCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (14 bp):
TCGGTTCAGTTCAC
Found at i:10766093 original size:5 final size:5
Alignment explanation
Indices: 10766083--10766120 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
10766073 ATTCCATTAT
10766083 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TTT
10766121 CTACATGTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (5 bp):
TTTAA
Found at i:10770337 original size:35 final size:35
Alignment explanation
Indices: 10770298--10770483 Score: 210
Period size: 35 Copynumber: 5.3 Consensus size: 35
10770288 AATCTAACAG
10770298 AAACACGCCAATGCTCATAAGAGCTAGTCCAACCA
1 AAACACGCCAATGCTCATAAGAGCTAGTCCAACCA
* * *
10770333 AAACATGCCAATGCTCACAAGGGCTAGTCCAACCA
1 AAACACGCCAATGCTCATAAGAGCTAGTCCAACCA
* * *
10770368 AAACCCGTCAATGCTCATAAGAGCTAGTCCAACCG
1 AAACACGCCAATGCTCATAAGAGCTAGTCCAACCA
* * * * **
10770403 AAACACACCAATGCTCATAAGAGGTAGTCTATCTG
1 AAACACGCCAATGCTCATAAGAGCTAGTCCAACCA
* * * **
10770438 AAACCCGCCAATGCTCATAAGAGTTAATCCAATTA
1 AAACACGCCAATGCTCATAAGAGCTAGTCCAACCA
*
10770473 AAACAAGCCAA
1 AAACACGCCAA
10770484 ACAAAGAGTA
Statistics
Matches: 125, Mismatches: 26, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
35 125 1.00
ACGTcount: A:0.39, C:0.28, G:0.15, T:0.17
Consensus pattern (35 bp):
AAACACGCCAATGCTCATAAGAGCTAGTCCAACCA
Found at i:10783663 original size:44 final size:44
Alignment explanation
Indices: 10783615--10783722 Score: 110
Period size: 44 Copynumber: 2.5 Consensus size: 44
10783605 TTAATCTGCT
*
10783615 CCACTGCAACCTCAGGGAGATAAGATTTGTTTTATCAGTCTACC
1 CCACTGCAACCTCAGGGAGATAAGACTTGTTTTATCAGTCTACC
** * * * ** * *
10783659 CCACTGTGACTTCAGGGGGATAAGACTTGTTTTCTTGGTCTGCT
1 CCACTGCAACCTCAGGGAGATAAGACTTGTTTTATCAGTCTACC
10783703 CCACTGCGAA-CTCAGGGAGA
1 CCACTGC-AACCTCAGGGAGA
10783723 AAGGAATCGT
Statistics
Matches: 49, Mismatches: 14, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
44 48 0.98
45 1 0.02
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (44 bp):
CCACTGCAACCTCAGGGAGATAAGACTTGTTTTATCAGTCTACC
Found at i:10783815 original size:129 final size:129
Alignment explanation
Indices: 10783667--10783912 Score: 379
Period size: 129 Copynumber: 1.9 Consensus size: 129
10783657 CCCCACTGTG
* * *
10783667 ACTTCAGGGGGATAAGACTTGT-TTTCTTGGTCTGCTCCACTGCGAA-CTCAGGGAGAAAGGAAT
1 ACTTCAGGGGGATAAGACTT-TCTTACTTAGTCTGCTCAACTG-GAACCTCAGGGAGAAAGGAAT
*
10783730 CGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCACCGTCTTCGATCCGTTCCACTGC
64 CGTGGCTTAAACCTGCTTCCTTACACTTGAAGATAAGATTCACCGTCTTCGATCCGTTCCACTGC
10783795 A
129 A
* * *
10783796 ACTTCAGGGGGATAAGACTTTCTTACTTAGTCTGCTCAACTGTAACCTCAGGGAGAAAGGACTTG
1 ACTTCAGGGGGATAAGACTTTCTTACTTAGTCTGCTCAACTGGAACCTCAGGGAGAAAGGAATCG
* *
10783861 TGGCTTAAACCTGCTTCCTTACACTTGAAGATAAGATTCGCTGTCTTCGATC
66 TGGCTTAAACCTGCTTCCTTACACTTGAAGATAAGATTCACCGTCTTCGATC
10783913 TGTCCTGCTA
Statistics
Matches: 106, Mismatches: 9, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
128 3 0.03
129 103 0.97
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (129 bp):
ACTTCAGGGGGATAAGACTTTCTTACTTAGTCTGCTCAACTGGAACCTCAGGGAGAAAGGAATCG
TGGCTTAAACCTGCTTCCTTACACTTGAAGATAAGATTCACCGTCTTCGATCCGTTCCACTGCA
Found at i:10784269 original size:87 final size:87
Alignment explanation
Indices: 10784037--10784391 Score: 451
Period size: 87 Copynumber: 4.1 Consensus size: 87
10784027 ATTCGCCCTC
* ** * * * ** * *
10784037 TTCGATCTGCTTCACTGTCGACGCAGGAGGGCAAGATCTATTATCTTTAACTAGCTCCACTACAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
10784102 CCGATGAAGGCAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* * * * * *
10784124 TTCAATTTGCTTCACTG-CAATACAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
10784188 CCGATGGAGGTAAGGCTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* *
10784210 TTCGATCTACTTCGCTGTTAATGCAGGAAGACAATATCTGCTATCTTTAACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
* *
10784275 CCGATGGAGGTAAGGTTTTGTT
66 CCGATGGAGGCAAGGCTTTGTT
* * * *
10784297 TTCGATCTGCTTCGCTATTAATGTAGGAAGACAAGATATTCTATCTTTAACCAGCTCCACTGCAA
1 TTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
* *
10784362 CCGATGGAGGCAATGCTTTATT
66 CCGATGGAGGCAAGGCTTTGTT
10784384 TTCGATCT
1 TTCGATCT
10784392 TCACTGATCT
Statistics
Matches: 236, Mismatches: 31, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
86 72 0.31
87 164 0.69
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (87 bp):
TTCGATCTGCTTCGCTGTTAATGCAGGAAGACAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
CCGATGGAGGCAAGGCTTTGTT
Found at i:10786481 original size:15 final size:13
Alignment explanation
Indices: 10786447--10786485 Score: 53
Period size: 13 Copynumber: 2.9 Consensus size: 13
10786437 TTGACCTTTC
10786447 CTTTT-CTTTTTT
1 CTTTTCCTTTTTT
10786459 CTTTTCCTTTTTT
1 CTTTTCCTTTTTT
10786472 CTTCTCTCCTTTTT
1 CTT-T-TCCTTTTT
10786486 CATTTTCATT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.21
13 10 0.42
14 1 0.04
15 8 0.33
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (13 bp):
CTTTTCCTTTTTT
Found at i:10791714 original size:16 final size:17
Alignment explanation
Indices: 10791693--10791733 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
10791683 ATAGATTAAT
*
10791693 AAATAAAGTTTAA-ATA
1 AAATAAAGTATAATATA
10791709 AAATAAAGTATAATATA
1 AAATAAAGTATAATATA
10791726 AAAGTAAA
1 AAA-TAAA
10791734 AATAATATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 12 0.55
17 6 0.27
18 4 0.18
ACGTcount: A:0.66, C:0.00, G:0.07, T:0.27
Consensus pattern (17 bp):
AAATAAAGTATAATATA
Found at i:10792535 original size:8 final size:7
Alignment explanation
Indices: 10792502--10792534 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
10792492 TTTATAGCCG
10792502 AAAATGAA
1 AAAAT-AA
10792510 AAAATAA
1 AAAATAA
10792517 AAAATAA
1 AAAATAA
10792524 AAAATAA
1 AAAATAA
10792531 AAAA
1 AAAA
10792535 AATCTACATT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 20 0.80
8 5 0.20
ACGTcount: A:0.85, C:0.00, G:0.03, T:0.12
Consensus pattern (7 bp):
AAAATAA
Found at i:10794480 original size:25 final size:25
Alignment explanation
Indices: 10794452--10794504 Score: 88
Period size: 25 Copynumber: 2.1 Consensus size: 25
10794442 ATCTTGAATT
*
10794452 ATTTGATTCTAATCAATTTGATTAA
1 ATTTGATTCTAATCAAATTGATTAA
*
10794477 ATTTGATTTTAATCAAATTGATTAA
1 ATTTGATTCTAATCAAATTGATTAA
10794502 ATT
1 ATT
10794505 GCCCCTTTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.38, C:0.06, G:0.08, T:0.49
Consensus pattern (25 bp):
ATTTGATTCTAATCAAATTGATTAA
Found at i:10795276 original size:89 final size:88
Alignment explanation
Indices: 10795174--10795761 Score: 431
Period size: 89 Copynumber: 6.7 Consensus size: 88
10795164 ATTTTTTTCC
*
10795174 AAATTAAAAGTAAATAAAATCTGTTTCGGGATTTATTCCCGCCGATTAACGGATTTTATTCCATT
1 AAATTAAAAGTAAATAAAATCTATTTCGGGATTTATTCCCGCCG-TTAACGGATTTTATTCCATT
10795239 ATTTTGATTTTATTTCCAAACGAG
65 ATTTTGATTTTATTTCCAAACGAG
* * * *
10795263 AAATTAAAGGTAAATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAATGGATTTTATTCCATT
1 AAATTAAAAGTAAATAAAATCTATTTCGGGATTTATTCCCGCCGTT-AACGGATTTTATTCCATT
* *
10795328 ATTTTAATTTTATTTCCAAACGGG
65 ATTTTGATTTTATTTCCAAACGAG
** * * * * * *
10795352 AAATTAATGGGAAATAAAATCCATTTCGCGATTTATTCCCGCCCATCAACGGATTTAATTCCATT
1 AAATTAAAAGTAAATAAAATCTATTTCGGGATTTATTCCCG-CCGTTAACGGATTTTATTCCATT
* *
10795417 ATTTTGATTTTATTACCAAA-TAGG
65 ATTTTGATTTTATTTCCAAACGA-G
* * *
10795441 AAATTAAAGGTAAATAAAAT-TCATTTCGGGATTGATTCCCGCTGTTCAAC-GATTTTATT-C-T
1 AAATTAAAAGTAAATAAAATCT-ATTTCGGGATTTATTCCCGCCGTT-AACGGATTTTATTCCAT
* * *
10795502 AATTTTAATTTTATTTTCAAAACTGAG
64 TATTTTGATTTTA-TTTCCAAAC-GAG
* * * * * * **
10795529 -TATGAAAACTAACTAAAAATCTATTTCGGGATGTATTCCAGTTGTTCAACGGA-TTTATT--A-
1 AAATTAAAAGTAAAT-AAAATCTATTTCGGGATTTATTCCCGCCGTT-AACGGATTTTATTCCAT
* * *
10795589 CATTTTGATTTTGTTGCCAAAAACGAG
64 TATTTTGATTTTATTTCC--AAACGAG
* * * * * * * *
10795616 AAA-CAGAAATTAAATAAATTTTTTTTCTGGATTTATTCCTGCCGTTTAACAAGATTTTATT---
1 AAATTA-AAAGTAAATAAAATCTATTTCGGGATTTATTCCCGCCG-TTAAC-GGATTTTATTCCA
* ***
10795677 TGATTTT-ATTTGT-TTTCCAAATTCG
63 TTATTTTGATTT-TATTTCCAAACGAG
* * *
10795702 -AATT-AAA-TCAAATAAAATCTGTTTCGGGATTTATTCCCGTCGTTTAACAAGATTTTATTC
1 AAATTAAAAGT-AAATAAAATCTATTTCGGGATTTATTCCCGCCG-TTAAC-GGATTTTATTC
10795762 GATATTGTTT
Statistics
Matches: 403, Mismatches: 72, Indels: 52
0.76 0.14 0.10
Matches are distributed among these distances:
83 1 0.00
84 47 0.12
85 2 0.00
86 19 0.05
87 54 0.13
88 72 0.18
89 205 0.51
90 3 0.01
ACGTcount: A:0.32, C:0.14, G:0.13, T:0.40
Consensus pattern (88 bp):
AAATTAAAAGTAAATAAAATCTATTTCGGGATTTATTCCCGCCGTTAACGGATTTTATTCCATTA
TTTTGATTTTATTTCCAAACGAG
Found at i:10795473 original size:178 final size:175
Alignment explanation
Indices: 10795185--10795522 Score: 482
Period size: 178 Copynumber: 1.9 Consensus size: 175
10795175 AATTAAAAGT
** * * * *
10795185 AAATAAAATCTGTTTCGGGATTTATTCCCGCCGATTAACGGATTTTATTCCATTATTTTGATTTT
1 AAATAAAATCCATTTCGCGATTTATTCCCGCCCATCAACGGATTTAATTCCATTATTTTGATTTT
* * * * * *
10795250 ATTTCCAAACGAGAAATTAAAGGTAAATAAAATCTGTTTCGGGATTTATTCTCGCCGTTCAATGG
66 ATTACCAAAAGAGAAATTAAAGGTAAATAAAATCTATTTCGGGATTGATTCCCGCCGTTCAA-CG
*
10795315 ATTTTATTCCATTATTTTAATTTTATTTCCAAACGGGAAATTAATGGG
130 ATTTTATT-C-TAATTTTAATTTTATTTCCAAACGGGAAATTAATGGG
10795363 AAATAAAATCCATTTCGCGATTTATTCCCGCCCATCAACGGATTTAATTCCATTATTTTGATTTT
1 AAATAAAATCCATTTCGCGATTTATTCCCGCCCATCAACGGATTTAATTCCATTATTTTGATTTT
*
10795428 ATTACCAAATAG-GAAATTAAAGGTAAATAAAAT-TCATTTCGGGATTGATTCCCGCTGTTCAAC
66 ATTACCAAA-AGAGAAATTAAAGGTAAATAAAATCT-ATTTCGGGATTGATTCCCGCCGTTCAAC
*
10795491 GATTTTATTCTAATTTTAATTTTATTTTCAAA
129 GATTTTATTCTAATTTTAATTTTATTTCCAAA
10795523 ACTGAGTATG
Statistics
Matches: 143, Mismatches: 15, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
175 20 0.14
176 1 0.01
177 10 0.07
178 111 0.78
179 1 0.01
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (175 bp):
AAATAAAATCCATTTCGCGATTTATTCCCGCCCATCAACGGATTTAATTCCATTATTTTGATTTT
ATTACCAAAAGAGAAATTAAAGGTAAATAAAATCTATTTCGGGATTGATTCCCGCCGTTCAACGA
TTTTATTCTAATTTTAATTTTATTTCCAAACGGGAAATTAATGGG
Found at i:10795795 original size:84 final size:82
Alignment explanation
Indices: 10795621--10795842 Score: 218
Period size: 84 Copynumber: 2.7 Consensus size: 82
10795611 ACGAGAAACA
* * * * *
10795621 GAAATTAAATAAATTTTTTTTCTGGATTTATTCCTGCCGTTTAACAAGATTTTATTTGATTTTAT
1 GAAATCAAATAAA-TCTATTTCTGGATTTATTCCCGCCGTTTAACAAGATTTTATTCGATTTTAT
*
10795686 TTGTTTTCCAAATTCGAAT
65 TTGTTTTCCAAA-TCAAAT
* * * *
10795705 TAAATCAAATAAAATCTGTTTCGGGATTTATTCCCGTCGTTTAACAAGATTTTATTCGATATTGT
1 GAAATCAAAT-AAATCTATTTCTGGATTTATTCCCGCCGTTTAACAAGATTTTATTCGAT-TT-T
10795770 -TTTG-TTTCCAAA-CAAAGAT
63 ATTTGTTTTCCAAATC-AA-AT
* * * * *
10795789 GCAATCAAATAATTTTATTTTTGGATTTATTCCCGCCATTTAAC-AGATTTTATT
1 GAAATCAAATAAATCTATTTCTGGATTTATTCCCGCCGTTTAACAAGATTTTATT
10795843 TTGATTTAAT
Statistics
Matches: 115, Mismatches: 18, Indels: 12
0.79 0.12 0.08
Matches are distributed among these distances:
82 11 0.10
83 28 0.24
84 66 0.57
85 9 0.08
86 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.11, T:0.45
Consensus pattern (82 bp):
GAAATCAAATAAATCTATTTCTGGATTTATTCCCGCCGTTTAACAAGATTTTATTCGATTTTATT
TGTTTTCCAAATCAAAT
Found at i:10819660 original size:7 final size:7
Alignment explanation
Indices: 10819648--10819683 Score: 54
Period size: 7 Copynumber: 5.0 Consensus size: 7
10819638 TTACTCGAAT
10819648 CCTAAAC
1 CCTAAAC
10819655 CCTAAAC
1 CCTAAAC
10819662 CCTAAAAC
1 CCT-AAAC
*
10819670 CTTAAAC
1 CCTAAAC
10819677 CCTAAAC
1 CCTAAAC
10819684 ACTTTCAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
7 20 0.77
8 6 0.23
ACGTcount: A:0.44, C:0.39, G:0.00, T:0.17
Consensus pattern (7 bp):
CCTAAAC
Found at i:10819675 original size:15 final size:15
Alignment explanation
Indices: 10819651--10819682 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
10819641 CTCGAATCCT
10819651 AAACCCTAAACCCTA
1 AAACCCTAAACCCTA
*
10819666 AAACCTTAAACCCTA
1 AAACCCTAAACCCTA
10819681 AA
1 AA
10819683 CACTTTCAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (15 bp):
AAACCCTAAACCCTA
Found at i:10824464 original size:32 final size:32
Alignment explanation
Indices: 10824418--10824482 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
10824408 TGAGGGGGAG
10824418 TGTTGGAATCCCTATAATTAAGGATAGAAATC
1 TGTTGGAATCCCTATAATTAAGGATAGAAATC
*
10824450 TGTTTGAATCCCTATAATTAAGGATAGAAATC
1 TGTTGGAATCCCTATAATTAAGGATAGAAATC
10824482 T
1 T
10824483 TACCTTATTA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (32 bp):
TGTTGGAATCCCTATAATTAAGGATAGAAATC
Found at i:10828476 original size:17 final size:17
Alignment explanation
Indices: 10828444--10828477 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
10828434 TTAAAATTAG
10828444 ATTGAGAAATTTATTTA
1 ATTGAGAAATTTATTTA
10828461 ATTGA-AAATTTAATTTA
1 ATTGAGAAATTT-ATTTA
10828478 GTTAATTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.44, C:0.00, G:0.09, T:0.47
Consensus pattern (17 bp):
ATTGAGAAATTTATTTA
Found at i:10829050 original size:74 final size:74
Alignment explanation
Indices: 10828903--10829051 Score: 244
Period size: 74 Copynumber: 2.0 Consensus size: 74
10828893 GCCTAAACGA
*
10828903 AATGTTCGAAGTATAAATTGTGCTTCACGCATCATTAGTATAACTGAGGTAAAGTGTGCTCCACA
1 AATGTCCGAAGTATAAATTGTGCTTCACGCATCATTAGTATAACTGAGGTAAAGTGTGCTCCACA
* *
10828968 CTTTATCAG
66 CCTCATCAG
** *
10828977 AATGTCCGAAGTATAAATTGTGCTTCGTGCATCATTAGTATAACTGAGGTAAAGTGTGCTCCGCA
1 AATGTCCGAAGTATAAATTGTGCTTCACGCATCATTAGTATAACTGAGGTAAAGTGTGCTCCACA
10829042 CCTCATCAG
66 CCTCATCAG
10829051 A
1 A
10829052 CTTCCAAAAT
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 69 1.00
ACGTcount: A:0.30, C:0.19, G:0.20, T:0.31
Consensus pattern (74 bp):
AATGTCCGAAGTATAAATTGTGCTTCACGCATCATTAGTATAACTGAGGTAAAGTGTGCTCCACA
CCTCATCAG
Found at i:10834367 original size:17 final size:18
Alignment explanation
Indices: 10834347--10834385 Score: 71
Period size: 17 Copynumber: 2.2 Consensus size: 18
10834337 TGACTGATTT
10834347 GGGCGTGTGGG-CCACAC
1 GGGCGTGTGGGCCCACAC
10834364 GGGCGTGTGGGCCCACAC
1 GGGCGTGTGGGCCCACAC
10834382 GGGC
1 GGGC
10834386 ATGCCACACG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.10, C:0.31, G:0.49, T:0.10
Consensus pattern (18 bp):
GGGCGTGTGGGCCCACAC
Found at i:10837101 original size:23 final size:23
Alignment explanation
Indices: 10837075--10837123 Score: 98
Period size: 23 Copynumber: 2.1 Consensus size: 23
10837065 TGTAGGATAA
10837075 ATTCGCTCTCCCAATATGATCAT
1 ATTCGCTCTCCCAATATGATCAT
10837098 ATTCGCTCTCCCAATATGATCAT
1 ATTCGCTCTCCCAATATGATCAT
10837121 ATT
1 ATT
10837124 TTATCTCATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.27, C:0.29, G:0.08, T:0.37
Consensus pattern (23 bp):
ATTCGCTCTCCCAATATGATCAT
Found at i:10841260 original size:23 final size:23
Alignment explanation
Indices: 10841230--10841277 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
10841220 TTCACCAAGT
*
10841230 ATAAAATTTTTAACCCTATTAAC
1 ATAAAATTTTAAACCCTATTAAC
10841253 ATAAAATTTTAAACCCTATTAAC
1 ATAAAATTTTAAACCCTATTAAC
10841276 AT
1 AT
10841278 GACTCAAACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.46, C:0.17, G:0.00, T:0.38
Consensus pattern (23 bp):
ATAAAATTTTAAACCCTATTAAC
Found at i:10841423 original size:19 final size:19
Alignment explanation
Indices: 10841388--10841424 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10841378 AAATGCATAC
*
10841388 TGGCACACAAGGCGCATCT
1 TGGCACACAAAGCGCATCT
*
10841407 TGGCACACAAAGTGCATC
1 TGGCACACAAAGCGCATC
10841425 CTAGTGCATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.30, C:0.30, G:0.24, T:0.16
Consensus pattern (19 bp):
TGGCACACAAAGCGCATCT
Found at i:10844117 original size:30 final size:30
Alignment explanation
Indices: 10844083--10844144 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
10844073 TGATCTACCA
10844083 TAATTTGATATGAAAAATTAAGTTCTTTTT
1 TAATTTGATATGAAAAATTAAGTTCTTTTT
10844113 TAATTTGATATGAAAAATTAAGTTCTTTTT
1 TAATTTGATATGAAAAATTAAGTTCTTTTT
10844143 TA
1 TA
10844145 CACTTAAAGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.37, C:0.03, G:0.10, T:0.50
Consensus pattern (30 bp):
TAATTTGATATGAAAAATTAAGTTCTTTTT
Found at i:10846058 original size:33 final size:34
Alignment explanation
Indices: 10846019--10846091 Score: 87
Period size: 32 Copynumber: 2.2 Consensus size: 34
10846009 TTTTTTCTTG
** * *
10846019 CTATTTTTGTTGTTGTTTTGCTGCTAT-TTTCTA
1 CTATTTTTGTTGTCATTTTGCTACTATATTGCTA
*
10846052 CTA-TTTTGTTGTCATTTTGCTATTATATTGCTA
1 CTATTTTTGTTGTCATTTTGCTACTATATTGCTA
10846085 CTATTTT
1 CTATTTT
10846092 AGAGACTTTT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
32 19 0.58
33 11 0.33
34 3 0.09
ACGTcount: A:0.14, C:0.12, G:0.12, T:0.62
Consensus pattern (34 bp):
CTATTTTTGTTGTCATTTTGCTACTATATTGCTA
Found at i:10864389 original size:6 final size:6
Alignment explanation
Indices: 10864378--10864425 Score: 55
Period size: 6 Copynumber: 8.3 Consensus size: 6
10864368 AATTTAGCCA
* * *
10864378 TTTATT TTTA-T TATA-T TTTATT TTTATT TTTAGT TTAATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
10864424 TT
1 TT
10864426 CTAATTTTTC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
5 8 0.23
6 27 0.77
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (6 bp):
TTTATT
Found at i:10869443 original size:13 final size:13
Alignment explanation
Indices: 10869425--10869452 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
10869415 GACTTGAATA
10869425 ATGTTTTGATGAT
1 ATGTTTTGATGAT
10869438 ATGTTTTGATGAT
1 ATGTTTTGATGAT
10869451 AT
1 AT
10869453 AAATGTGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.00, G:0.21, T:0.54
Consensus pattern (13 bp):
ATGTTTTGATGAT
Found at i:10874488 original size:19 final size:20
Alignment explanation
Indices: 10874464--10874512 Score: 59
Period size: 19 Copynumber: 2.5 Consensus size: 20
10874454 TTGTTAGTAA
10874464 TTTTTGTGATTAGGTTAAT-
1 TTTTTGTGATTAGGTTAATG
*
10874483 TTTTTGT--TTAGTTTAATG
1 TTTTTGTGATTAGGTTAATG
10874501 TTTATTGTGATT
1 TTT-TTGTGATT
10874513 TGGTAGGTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 9 0.36
18 3 0.12
19 11 0.44
21 2 0.08
ACGTcount: A:0.18, C:0.00, G:0.18, T:0.63
Consensus pattern (20 bp):
TTTTTGTGATTAGGTTAATG
Found at i:10874493 original size:17 final size:18
Alignment explanation
Indices: 10874461--10874499 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
10874451 ATTTTGTTAG
10874461 TAATTTTTGTGATTAGGT
1 TAATTTTTGTGATTAGGT
* *
10874479 TAATTTTT-TGTTTAGTT
1 TAATTTTTGTGATTAGGT
10874496 TAAT
1 TAAT
10874500 GTTTATTGTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.23, C:0.00, G:0.15, T:0.62
Consensus pattern (18 bp):
TAATTTTTGTGATTAGGT
Found at i:10882985 original size:39 final size:38
Alignment explanation
Indices: 10882936--10883035 Score: 123
Period size: 39 Copynumber: 2.6 Consensus size: 38
10882926 CGAATATAAT
*
10882936 AATTATAATTACCATAATTATAATAATATTTGA-CCAAAA
1 AATTATAATTACCATAATTATAATAATATTCGATCC--AA
* *
10882975 AATTACAATTA-CAGTAATTATAATAATATTCGATCCTA
1 AATTATAATTACCA-TAATTATAATAATATTCGATCCAA
*
10883013 AATTATAATTACAATAATTATAA
1 AATTATAATTACCATAATTATAA
10883036 CAAGGATTTC
Statistics
Matches: 53, Mismatches: 5, Indels: 7
0.82 0.08 0.11
Matches are distributed among these distances:
38 22 0.42
39 29 0.55
40 2 0.04
ACGTcount: A:0.50, C:0.10, G:0.03, T:0.37
Consensus pattern (38 bp):
AATTATAATTACCATAATTATAATAATATTCGATCCAA
Found at i:10889576 original size:40 final size:40
Alignment explanation
Indices: 10889521--10889669 Score: 174
Period size: 40 Copynumber: 3.7 Consensus size: 40
10889511 TATGTCATGA
10889521 GATTATTAGGCTTAGTGCCTAGCAGGCTTTGTGCCGGTGT
1 GATTATTAGGCTTAGTGCCTAGCAGGCTTTGTGCCGGTGT
* * * **
10889561 GATTATCAGGCTTAGTGCATAACAGGCTTTGTGTTGGTGT
1 GATTATTAGGCTTAGTGCCTAGCAGGCTTTGTGCCGGTGT
* * **
10889601 GATTATTAGGCTTAGTGCCTAGAAGGCTTTATGCTAGTGT
1 GATTATTAGGCTTAGTGCCTAGCAGGCTTTGTGCCGGTGT
* * *
10889641 -AGTTATTAGACTTAGTGCCTCGTAGGCTT
1 GA-TTATTAGGCTTAGTGCCTAGCAGGCTT
10889670 CGTGTGGATG
Statistics
Matches: 93, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
39 1 0.01
40 92 0.99
ACGTcount: A:0.19, C:0.15, G:0.29, T:0.37
Consensus pattern (40 bp):
GATTATTAGGCTTAGTGCCTAGCAGGCTTTGTGCCGGTGT
Found at i:10889963 original size:21 final size:21
Alignment explanation
Indices: 10889937--10889980 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
10889927 TATTGGTATA
10889937 CTTCAGTGGTATAACGAAATC
1 CTTCAGTGGTATAACGAAATC
*
10889958 CTTCAGTGGTATAATGAAATC
1 CTTCAGTGGTATAACGAAATC
10889979 CT
1 CT
10889981 ACTTGGCTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Consensus pattern (21 bp):
CTTCAGTGGTATAACGAAATC
Found at i:10890276 original size:10 final size:10
Alignment explanation
Indices: 10890248--10890277 Score: 51
Period size: 11 Copynumber: 2.9 Consensus size: 10
10890238 TAGTTTTAGG
10890248 TTTAGTTTTC
1 TTTAGTTTTC
10890258 TTTAGGTTTTC
1 TTTA-GTTTTC
10890269 TTTAGTTTT
1 TTTAGTTTT
10890278 TCTCTGCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 9 0.47
11 10 0.53
ACGTcount: A:0.10, C:0.07, G:0.13, T:0.70
Consensus pattern (10 bp):
TTTAGTTTTC
Found at i:10899229 original size:50 final size:50
Alignment explanation
Indices: 10899154--10899254 Score: 141
Period size: 50 Copynumber: 2.0 Consensus size: 50
10899144 TGTGTCAAAT
* * *
10899154 ATCACGTCTGGCTTGCAAAGAAAGGTATAGTT-TTCACTATAGTTTGTCTG
1 ATCACATCTGGCTTGCAAAGAAAGGTATAATTCTAC-CTATAGTTTGTCTG
* *
10899204 ATCACATCTGGCTTGCAACGAAAGGTATAATTCTACCTTTAGTTTGTCTG
1 ATCACATCTGGCTTGCAAAGAAAGGTATAATTCTACCTATAGTTTGTCTG
10899254 A
1 A
10899255 AGTTAATTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
50 43 0.96
51 2 0.04
ACGTcount: A:0.27, C:0.18, G:0.20, T:0.36
Consensus pattern (50 bp):
ATCACATCTGGCTTGCAAAGAAAGGTATAATTCTACCTATAGTTTGTCTG
Found at i:10904281 original size:20 final size:20
Alignment explanation
Indices: 10904257--10904305 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
10904247 TGCTACTAAC
* *
10904257 GATTTAAATCTGCTTCAATCT
1 GATTTAAATCCGCTGCAAT-T
10904278 -ATTTAAATCCGCTGCAATT
1 GATTTAAATCCGCTGCAATT
10904297 GATTTAAAT
1 GATTTAAAT
10904306 ATGTTTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 1 0.04
20 24 0.96
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (20 bp):
GATTTAAATCCGCTGCAATT
Found at i:10908164 original size:3 final size:3
Alignment explanation
Indices: 10908158--10908307 Score: 89
Period size: 3 Copynumber: 48.3 Consensus size: 3
10908148 AGTCCTTTTT
* *
10908158 TTA TTA TTC TTG TTA TGTTA TTGA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA T-T-A TT-A TTA TTA TTA TTA TTA TTA TTA TTA
* * *
10908206 TTA TTA TTA TTA -TA GGTA TTA TTA TT- GTA TTA GT- TTA TATA TCTA
1 TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA
10908251 TTTA CCTT- TTA TATA TTA TT- TTA TT- TTA TTA TGTA TTA TTA TT-
1 -TTA --TTA TTA T-TA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA
*
10908294 TTAA TTA TTT TTA T
1 TT-A TTA TTA TTA T
10908308 CATATATATC
Statistics
Matches: 118, Mismatches: 13, Indels: 32
0.72 0.08 0.20
Matches are distributed among these distances:
2 12 0.10
3 79 0.67
4 22 0.19
5 5 0.04
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:10914724 original size:22 final size:22
Alignment explanation
Indices: 10914705--10914748 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
10914695 CATAAATATT
* *
10914705 TTCAAATATATATAATAATAAA
1 TTCAAAAATATATAAAAATAAA
10914727 TTCAAAAATATATAAAAATAAA
1 TTCAAAAATATATAAAAATAAA
10914749 ATAATATTGT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.32
Consensus pattern (22 bp):
TTCAAAAATATATAAAAATAAA
Found at i:10915557 original size:50 final size:51
Alignment explanation
Indices: 10915503--10915600 Score: 123
Period size: 50 Copynumber: 1.9 Consensus size: 51
10915493 ATTTAAATTT
* *
10915503 AAATTTATTATTATGTT-TTTTT--AAATAATTTTTGT-TTTTATATATTTCTC
1 AAATTCATTATTAT-TTCTTTTTGAAAAT-ATTTATGTATTTT-TATATTTCTC
10915553 AAATTCATTATTATTTCTTTTTGAAAATATTTATGTATTTTTATATTT
1 AAATTCATTATTATTTCTTTTTGAAAATATTTATGTATTTTTATATTT
10915601 TTTTAAAATT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
49 2 0.05
50 18 0.43
51 14 0.33
52 8 0.19
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (51 bp):
AAATTCATTATTATTTCTTTTTGAAAATATTTATGTATTTTTATATTTCTC
Found at i:10916222 original size:22 final size:21
Alignment explanation
Indices: 10916197--10916242 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
10916187 AAATACCGAT
*
10916197 AAAAGATTTA-CATGTTTGTAAA
1 AAAAGAATTATCAT-TTT-TAAA
10916219 AAAAGAATTATCATTTTTAAA
1 AAAAGAATTATCATTTTTAAA
10916240 AAA
1 AAA
10916243 GACATTGTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 7 0.32
22 12 0.55
23 3 0.14
ACGTcount: A:0.52, C:0.04, G:0.09, T:0.35
Consensus pattern (21 bp):
AAAAGAATTATCATTTTTAAA
Found at i:10917596 original size:16 final size:17
Alignment explanation
Indices: 10917575--10917620 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 17
10917565 TCGGGTTGAG
10917575 AAAATTATTTAATTAA-
1 AAAATTATTTAATTAAT
*
10917591 AAAATTAATTAATTAATT
1 AAAATTATTTAATTAA-T
10917609 AAAATTAATTTA
1 AAAATT-ATTTA
10917621 TTATGTTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
16 15 0.60
18 6 0.24
19 4 0.16
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (17 bp):
AAAATTATTTAATTAAT
Found at i:10938996 original size:45 final size:45
Alignment explanation
Indices: 10938932--10939077 Score: 213
Period size: 45 Copynumber: 3.2 Consensus size: 45
10938922 GTAACGATAG
* * *
10938932 CAGTAACAGTAACAATATTCAACACACAAAGTGCTGAATCTGTAA
1 CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCAGTAA
* *
10938977 CAGTAACGGTAACAGTATTCGACACACAAAGTG-TCGAATCGGTAA
1 CAGTAACAGTAACAGTATTCGACACACAAAGTGCT-GAATCAGTAA
*
10939022 CAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATCAGTAA
1 CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCAGTAA
*
10939067 TAGTAACAGTA
1 CAGTAACAGTA
10939078 GTCGGCACAT
Statistics
Matches: 91, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
44 1 0.01
45 90 0.99
ACGTcount: A:0.42, C:0.20, G:0.18, T:0.21
Consensus pattern (45 bp):
CAGTAACAGTAACAGTATTCGACACACAAAGTGCTGAATCAGTAA
Found at i:10939101 original size:38 final size:39
Alignment explanation
Indices: 10938932--10939104 Score: 116
Period size: 45 Copynumber: 4.2 Consensus size: 39
10938922 GTAACGATAG
* * * *
10938932 CAGTAACAGTAACAATATTCAACACACAAAGTGCTGAATCTGT
1 CAGTAACAGTAACAGTAGTCGACACACAAAGTGCCGAA----T
* * *
10938975 AACAGTAACGGTAACAGTATTCGACACACAAAGTGTCGAATCGGT
1 --CAGTAACAGTAACAGTAGTCGACACACAAAGTGCCGAA----T
*
10939020 AACAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAAT
1 --CAGTAACAGTAACAGTAGTCGACACACAAAGTGCCGAAT
* * *
10939061 CAGTAATAGTAACAGTAGTCGGCACA-TAAGTGCCTG-AT
1 CAGTAACAGTAACAGTAGTCGACACACAAAGTGCC-GAAT
10939099 CAGTAA
1 CAGTAA
10939105 GCCAGCAAAT
Statistics
Matches: 115, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
38 15 0.13
39 24 0.21
41 1 0.01
45 75 0.65
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.21
Consensus pattern (39 bp):
CAGTAACAGTAACAGTAGTCGACACACAAAGTGCCGAAT
Found at i:10939334 original size:40 final size:39
Alignment explanation
Indices: 10939279--10939366 Score: 113
Period size: 39 Copynumber: 2.2 Consensus size: 39
10939269 AATTCATTAC
* * * *
10939279 TTCAGTAATTTCACAATTCAGTGCATTATACATAACAATA
1 TTCAGTATTTTCACAATTCACT-CAGTATACAAAACAATA
*
10939319 TTCAGTATTTTCACAATTCACTCAGTATTCAAAACAATA
1 TTCAGTATTTTCACAATTCACTCAGTATACAAAACAATA
*
10939358 TCCAGTATT
1 TTCAGTATT
10939367 CCCTAATTCA
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
39 22 0.52
40 20 0.48
ACGTcount: A:0.38, C:0.19, G:0.07, T:0.36
Consensus pattern (39 bp):
TTCAGTATTTTCACAATTCACTCAGTATACAAAACAATA
Found at i:10940033 original size:8 final size:8
Alignment explanation
Indices: 10940022--10940076 Score: 58
Period size: 8 Copynumber: 6.8 Consensus size: 8
10940012 ATTTATTTAA
10940022 AATATAAT
1 AATATAAT
10940030 AATATAAT
1 AATATAAT
10940038 AATATAAT
1 AATATAAT
* *
10940046 -ATAATTTAC
1 AAT-A-TAAT
10940055 AATATAAT
1 AATATAAT
*
10940063 AAAATAAT
1 AATATAAT
10940071 AATATA
1 AATATA
10940077 CTTCAAAAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
7 2 0.05
8 31 0.82
9 3 0.08
10 2 0.05
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (8 bp):
AATATAAT
Found at i:10945369 original size:31 final size:31
Alignment explanation
Indices: 10945332--10945393 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
10945322 AGATAATTTT
10945332 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
*
10945363 AAAGAGTTTTATTAGGATTCACTTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
10945394 TAATTTGCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.31, C:0.11, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:10956560 original size:14 final size:14
Alignment explanation
Indices: 10956537--10956569 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
10956527 ATTTAATAAA
10956537 TAAAAATCTAAAAC
1 TAAAAATCTAAAAC
*
10956551 TAAAAGTCTAAAAC
1 TAAAAATCTAAAAC
10956565 TAAAA
1 TAAAA
10956570 CACAATAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.64, C:0.12, G:0.03, T:0.21
Consensus pattern (14 bp):
TAAAAATCTAAAAC
Found at i:10959872 original size:28 final size:29
Alignment explanation
Indices: 10959840--10959914 Score: 100
Period size: 28 Copynumber: 2.7 Consensus size: 29
10959830 AATGAGACTA
* **
10959840 GCACTAAGTGTACGAGTTTAATTG-AAAT
1 GCACTAAGTGTGCGAGTTTAAGGGTAAAT
*
10959868 GCACTAAGTGTGCGAGTATAAGGGTAAAT
1 GCACTAAGTGTGCGAGTTTAAGGGTAAAT
10959897 -CACTAAGTGTGCGAGTTT
1 GCACTAAGTGTGCGAGTTT
10959915 GATTATTAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
28 37 0.90
29 4 0.10
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (29 bp):
GCACTAAGTGTGCGAGTTTAAGGGTAAAT
Found at i:10959928 original size:28 final size:27
Alignment explanation
Indices: 10959839--10959937 Score: 94
Period size: 28 Copynumber: 3.6 Consensus size: 27
10959829 TAATGAGACT
*
10959839 AGCACTAAGTGTACGAGTTTAATTGA-A
1 AGCACTAAGTGTGCGAGTTTAATT-ATA
* *
10959866 ATGCACTAAGTGTGCGAGTATAAGGGTA-A
1 A-GCACTAAGTGTGCGAGTTTAA--TTATA
* *
10959895 ATCACTAAGTGTGCGAGTTTGATTATTA
1 AGCACTAAGTGTGCGAGTTTAATTA-TA
10959923 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
10959938 TACTTATTAA
Statistics
Matches: 59, Mismatches: 8, Indels: 9
0.78 0.11 0.12
Matches are distributed among these distances:
26 2 0.03
27 1 0.02
28 52 0.88
29 3 0.05
30 1 0.02
ACGTcount: A:0.32, C:0.12, G:0.26, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTTAATTATA
Found at i:10960983 original size:47 final size:47
Alignment explanation
Indices: 10960924--10961399 Score: 476
Period size: 47 Copynumber: 10.1 Consensus size: 47
10960914 CTAAATTTGA
* * * * *
10960924 TGTCC-ATTTTGAGTGTATTGATGCTGTCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATTTAAGCTGTCCAATTTGATGTATAATGC
* * * * *
10960970 TGTCCAATTTTGAGTGTATTGT-TGCTGCCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATT-TAAGCTGTCCAATTTGATGTATAATGC
* * * * * * *
10961017 TGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAATATATAATGT
1 TGTCCAATTTTGAGTATATTTAAGCTGTCCAATTTGATGTATAATGC
* * * * *
10961064 TGTCCTATTGTAAGTATATTTAAGCTGTCTAATTTGATTTATAATGC
1 TGTCCAATTTTGAGTATATTTAAGCTGTCCAATTTGATGTATAATGC
* * *
10961111 TGTCCAATTGTGAGTATATTTAAGCTATCTAATTTGATGTATAATGC
1 TGTCCAATTTTGAGTATATTTAAGCTGTCCAATTTGATGTATAATGC
* * * * * *
10961158 TGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAATATATAATGC
1 TGTCCAATTTTGAGTATATTTAAGCTGTCCAATTTGATGTATAATGC
* * * *
10961205 TGTCCAATTGTGAGTATATTTAAGCTATCTAATTTGATTTATAATGC
1 TGTCCAATTTTGAGTATATTTAAGCTGTCCAATTTGATGTATAATGC
* * ** *
10961252 TGTCCAATTGTGAGTATATTTAAGCTATGTAATTTGATGTATAATGT
1 TGTCCAATTTTGAGTATATTTAAGCTGTCCAATTTGATGTATAATGC
*
10961299 TGTCCAATTTTGGGTATATTTAAGCTG-CCTAATTTGATGTATAATGC
1 TGTCCAATTTTGAGTATATTTAAGCTGTCC-AATTTGATGTATAATGC
* * * *
10961346 TGTCC-ATTTTGAGCATA-TTATTGCTGTCCAATTTGTTGAATAATTGC
1 TGTCCAATTTTGAGTATATTTA-AGCTGTCCAATTTGATGTATAA-TGC
10961393 TGTCCAA
1 TGTCCAA
10961400 AACAGAGTTG
Statistics
Matches: 369, Mismatches: 53, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
45 3 0.01
46 31 0.08
47 334 0.91
48 1 0.00
ACGTcount: A:0.26, C:0.12, G:0.17, T:0.45
Consensus pattern (47 bp):
TGTCCAATTTTGAGTATATTTAAGCTGTCCAATTTGATGTATAATGC
Found at i:10961394 original size:141 final size:141
Alignment explanation
Indices: 10960962--10961399 Score: 562
Period size: 141 Copynumber: 3.1 Consensus size: 141
10960952 CATTTTAATG
* * * ** * * *
10960962 TATAATGCTGTCCAATTTTGAGTGTATTGT-TGCTGCCCATTTTAATGTATAATGCTGTCCAATT
1 TATAATGCTGTCCAATTGTGAGTATATT-TAAGCTATCTAATTTGATGTATAATGCTGTCCAATT
* * *
10961026 TTGAGTGTATTGATGCTGTCCATTTTAATATATAATGTTGTCCTATTGTAAGTATATTTAAGCTG
65 TTGAGTGTATTGATGCTGTCCATTTTAATATATAATGCTGTCCAATTGTGAGTATATTTAAGCTG
10961091 TCTAATTTGATT
130 TCTAATTTGATT
10961103 TATAATGCTGTCCAATTGTGAGTATATTTAAGCTATCTAATTTGATGTATAATGCTGTCCAATTT
1 TATAATGCTGTCCAATTGTGAGTATATTTAAGCTATCTAATTTGATGTATAATGCTGTCCAATTT
*
10961168 TGAGTGTATTGATGCTGTCCATTTTAATATATAATGCTGTCCAATTGTGAGTATATTTAAGCTAT
66 TGAGTGTATTGATGCTGTCCATTTTAATATATAATGCTGTCCAATTGTGAGTATATTTAAGCTGT
10961233 CTAATTTGATT
131 CTAATTTGATT
* *
10961244 TATAATGCTGTCCAATTGTGAGTATATTTAAGCTATGTAATTTGATGTATAATGTTGTCCAATTT
1 TATAATGCTGTCCAATTGTGAGTATATTTAAGCTATCTAATTTGATGTATAATGCTGTCCAATTT
* * * * * * * * * *
10961309 TGGGTATATTTAAGCTG-CCTAATTTGATGTATAATGCTGTCC-ATTTTGAGCATA-TTATTGCT
66 TGAGTGTATTGATGCTGTCC-ATTTTAATATATAATGCTGTCCAATTGTGAGTATATTTA-AGCT
*
10961371 GTCCAATTTG-TT
129 GTCTAATTTGATT
*
10961383 GAATAATTGCTGTCCAA
1 -TATAA-TGCTGTCCAA
10961400 AACAGAGTTG
Statistics
Matches: 265, Mismatches: 27, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
139 5 0.02
140 28 0.11
141 232 0.88
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.44
Consensus pattern (141 bp):
TATAATGCTGTCCAATTGTGAGTATATTTAAGCTATCTAATTTGATGTATAATGCTGTCCAATTT
TGAGTGTATTGATGCTGTCCATTTTAATATATAATGCTGTCCAATTGTGAGTATATTTAAGCTGT
CTAATTTGATT
Found at i:10967840 original size:28 final size:28
Alignment explanation
Indices: 10967807--10967905 Score: 92
Period size: 28 Copynumber: 3.5 Consensus size: 28
10967797 TAATGAGATT
* **
10967807 AGCACTAAGTGTACGAGTTTAATTG-AA
1 AGCACTAAGTGTGCGAGTTTAAGGGTAA
* *
10967834 ATGCACTAAGTGTGTGAGTATAAGGGTAA
1 A-GCACTAAGTGTGCGAGTTTAAGGGTAA
* *** *
10967863 AGCACTAAGTGTGCGAGTTTGATTATTA
1 AGCACTAAGTGTGCGAGTTTAAGGGTAA
10967891 AGCACTAAGTGTGCG
1 AGCACTAAGTGTGCG
10967906 TACTTATTAA
Statistics
Matches: 58, Mismatches: 12, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
27 1 0.02
28 54 0.93
29 3 0.05
ACGTcount: A:0.32, C:0.11, G:0.27, T:0.29
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTAAGGGTAA
Found at i:10968950 original size:47 final size:47
Alignment explanation
Indices: 10968891--10969370 Score: 552
Period size: 47 Copynumber: 10.2 Consensus size: 47
10968881 CTAAATTTGA
* *
10968891 TGTCC-ATTTTGAGTGTATTGATGCTGTCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATTGAAGCTGTCCATTTTAATGTATAATGC
* ** *
10968937 TGTCCAATTTTGAGTGTATTGTTGCTGCCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATTGAAGCTGTCCATTTTAATGTATAATGC
* *
10968984 TGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAATGTATAATGC
1 TGTCCAATTTTGAGTATATTGAAGCTGTCCATTTTAATGTATAATGC
* * *
10969031 TGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAATATATAATGC
1 TGTCCAATTTTGAGTATATTGAAGCTGTCCATTTTAATGTATAATGC
* * * *
10969078 TGTCCAATTGTGAGTATATTTAAGCTGTCTAATTTT-ATTTATAATGC
1 TGTCCAATTTTGAGTATATTGAAGCTGTC-CATTTTAATGTATAATGC
* * * * * *
10969125 TGTCCAATTGTGAGTATATTTAAGCTATCTAATTTGATGTATAATGC
1 TGTCCAATTTTGAGTATATTGAAGCTGTCCATTTTAATGTATAATGC
* * *
10969172 TGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAATATATAATGC
1 TGTCCAATTTTGAGTATATTGAAGCTGTCCATTTTAATGTATAATGC
* * * * * *
10969219 TGTCCAATTGTGAGTATATTTAAGCTGTCTAATTTGATTTATAATGC
1 TGTCCAATTTTGAGTATATTGAAGCTGTCCATTTTAATGTATAATGC
* * * * * *
10969266 TGTCCAATTGTGAGTATATTTAAGCTATCTAATTTGATGTATAATGC
1 TGTCCAATTTTGAGTATATTGAAGCTGTCCATTTTAATGTATAATGC
* * * *
10969313 TGTCCAATTTTGGGTATATTTAAGCTG-CCTAATTTGATGTATAATGC
1 TGTCCAATTTTGAGTATATTGAAGCTGTCC-ATTTTAATGTATAATGC
*
10969360 TGTCCATTTTT
1 TGTCCAATTTT
10969371 ATCATATTAT
Statistics
Matches: 391, Mismatches: 39, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
46 10 0.03
47 376 0.96
48 5 0.01
ACGTcount: A:0.25, C:0.12, G:0.17, T:0.45
Consensus pattern (47 bp):
TGTCCAATTTTGAGTATATTGAAGCTGTCCATTTTAATGTATAATGC
Found at i:10969092 original size:141 final size:140
Alignment explanation
Indices: 10968891--10969365 Score: 668
Period size: 141 Copynumber: 3.4 Consensus size: 140
10968881 CTAAATTTGA
* * *
10968891 TGTCC-ATTTTGAGTGTATTGATGCTGTCCATTTTAATGTATAATGCTGTCCAATTTTGAGTGTA
1 TGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAATATATAATGCTGTCCAATTGTGAGTATA
* * * * * * * * * *
10968955 TTGT-TGCTGCCCATTTTAATGTATAATGCTGTCCAATTTTGAGTGTATTGATGCTGTCCATTTT
66 TT-TAAGCTGCCAATTTT-ATTTATAATGCTGTCCAATTGTGAGTATATTTAAGCTATCTAATTT
*
10969019 AATGTATAATGC
129 GATGTATAATGC
10969031 TGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAATATATAATGCTGTCCAATTGTGAGTATA
1 TGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAATATATAATGCTGTCCAATTGTGAGTATA
*
10969096 TTTAAGCTGTCTAATTTTATTTATAATGCTGTCCAATTGTGAGTATATTTAAGCTATCTAATTTG
66 TTTAAGCTG-CCAATTTTATTTATAATGCTGTCCAATTGTGAGTATATTTAAGCTATCTAATTTG
10969161 ATGTATAATGC
130 ATGTATAATGC
10969172 TGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAATATATAATGCTGTCCAATTGTGAGTATA
1 TGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAATATATAATGCTGTCCAATTGTGAGTATA
* *
10969237 TTTAAGCTGTCTAATTTGATTTATAATGCTGTCCAATTGTGAGTATATTTAAGCTATCTAATTTG
66 TTTAAGCTG-CCAATTTTATTTATAATGCTGTCCAATTGTGAGTATATTTAAGCTATCTAATTTG
10969302 ATGTATAATGC
130 ATGTATAATGC
* * * * * * *
10969313 TGTCCAATTTTGGGTATATTTAAGCTG-CCTAATTTGATGTATAATGCTGTCCA
1 TGTCCAATTTTGAGTGTATTGATGCTGTCC-ATTTTAATATATAATGCTGTCCA
10969366 TTTTTATCAT
Statistics
Matches: 308, Mismatches: 23, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
140 8 0.03
141 294 0.95
142 6 0.02
ACGTcount: A:0.26, C:0.12, G:0.18, T:0.44
Consensus pattern (140 bp):
TGTCCAATTTTGAGTGTATTGATGCTGTCCATTTTAATATATAATGCTGTCCAATTGTGAGTATA
TTTAAGCTGCCAATTTTATTTATAATGCTGTCCAATTGTGAGTATATTTAAGCTATCTAATTTGA
TGTATAATGC
Found at i:10971722 original size:17 final size:17
Alignment explanation
Indices: 10971700--10971733 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10971690 GTGATTCAAC
10971700 ACTTTAAATCAGTTAAT
1 ACTTTAAATCAGTTAAT
* *
10971717 ACTTTAATTCGGTTAAT
1 ACTTTAAATCAGTTAAT
10971734 TCAGTTAATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (17 bp):
ACTTTAAATCAGTTAAT
Found at i:10976770 original size:17 final size:17
Alignment explanation
Indices: 10976748--10976785 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
10976738 AATTTCATCC
*
10976748 TTTACGGTAAGTTAAAG
1 TTTACGGTAAGTCAAAG
*
10976765 TTTACGTTAAGTCAAAG
1 TTTACGGTAAGTCAAAG
10976782 TTTA
1 TTTA
10976786 AGTTTATTAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.34, C:0.08, G:0.18, T:0.39
Consensus pattern (17 bp):
TTTACGGTAAGTCAAAG
Found at i:10982211 original size:43 final size:43
Alignment explanation
Indices: 10982139--10982295 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
10982129 TTATAGAAAT
** *
10982139 AAACGCCGCTAAAGCTCATGTTCTTTAGCGGCGCTTGTACAAC
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTATACAAC
** * *
10982182 AAACGCCGCTAAAGAACATGAGCTATAGCGGCGC--AAACCAAC
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTATA-CAAC
* * *
10982224 AAACGCCGCTAAAGTACATGTTCTTTAGCGGCGCTTTCTTC-AC
1 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGC-TTATACAAC
10982267 AAACGCCGCTAAAAGAA-ATGTTCTTTAGC
1 AAACGCCGCT-AAAGAACATGTTCTTTAGC
10982296 AGCGTTTTAT
Statistics
Matches: 94, Mismatches: 15, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
41 1 0.01
42 34 0.36
43 53 0.56
44 6 0.06
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTATACAAC
Found at i:10982237 original size:42 final size:42
Alignment explanation
Indices: 10982178--10982257 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
10982168 GGCGCTTGTA
10982178 CAACAAACGCCGCTAAAGAACATGAGCTATAGCGGCGCAAAC
1 CAACAAACGCCGCTAAAGAACATGAGCTATAGCGGCGCAAAC
* ** *
10982220 CAACAAACGCCGCTAAAGTACATGTTCTTTAGCGGCGC
1 CAACAAACGCCGCTAAAGAACATGAGCTATAGCGGCGC
10982258 TTTCTTCACA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.35, C:0.29, G:0.21, T:0.15
Consensus pattern (42 bp):
CAACAAACGCCGCTAAAGAACATGAGCTATAGCGGCGCAAAC
Found at i:10982758 original size:21 final size:21
Alignment explanation
Indices: 10982732--10982804 Score: 110
Period size: 21 Copynumber: 3.5 Consensus size: 21
10982722 TTCTTTTGAA
10982732 CCTCTGCTTCTCTCGATGTAG
1 CCTCTGCTTCTCTCGATGTAG
*
10982753 CCTCTGCTTCTCTCGATATAG
1 CCTCTGCTTCTCTCGATGTAG
* * *
10982774 CCTCTGCTTCTCTTGCTGCAG
1 CCTCTGCTTCTCTCGATGTAG
10982795 CCTCTGCTTC
1 CCTCTGCTTC
10982805 CCTCACTGCC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 47 1.00
ACGTcount: A:0.08, C:0.37, G:0.16, T:0.38
Consensus pattern (21 bp):
CCTCTGCTTCTCTCGATGTAG
Found at i:10982813 original size:21 final size:21
Alignment explanation
Indices: 10982732--10982824 Score: 107
Period size: 21 Copynumber: 4.4 Consensus size: 21
10982722 TTCTTTTGAA
*
10982732 CCTCTGCTTCTCTCGATGTAG
1 CCTCTGCTTCTCTCGATGCAG
**
10982753 CCTCTGCTTCTCTCGATATAG
1 CCTCTGCTTCTCTCGATGCAG
* *
10982774 CCTCTGCTTCTCTTGCTGCAG
1 CCTCTGCTTCTCTCGATGCAG
* *
10982795 CCTCTGCTTCCCTC-ACTGCCG
1 CCTCTGCTTCTCTCGA-TGCAG
10982816 CCTCTGCTT
1 CCTCTGCTT
10982825 TTAGTTGTAG
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
21 62 1.00
ACGTcount: A:0.08, C:0.40, G:0.16, T:0.37
Consensus pattern (21 bp):
CCTCTGCTTCTCTCGATGCAG
Found at i:10985625 original size:13 final size:12
Alignment explanation
Indices: 10985598--10985636 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
10985588 CTAAATAAAC
10985598 TTCATTCAGAAA
1 TTCATTCAGAAA
*
10985610 TTCATTTAGAAAA
1 TTCATTCAG-AAA
*
10985623 TTCATTCAGCAA
1 TTCATTCAGAAA
10985635 TT
1 TT
10985637 TGTATGTTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
12 12 0.52
13 11 0.48
ACGTcount: A:0.38, C:0.15, G:0.08, T:0.38
Consensus pattern (12 bp):
TTCATTCAGAAA
Found at i:10985889 original size:18 final size:18
Alignment explanation
Indices: 10985866--10985900 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
10985856 TTTGCCCTTA
*
10985866 GTAATCGGCAGAGGCAAC
1 GTAATCGACAGAGGCAAC
10985884 GTAATCGACAGAGGCAA
1 GTAATCGACAGAGGCAA
10985901 ACCCTAGAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.20, G:0.31, T:0.11
Consensus pattern (18 bp):
GTAATCGACAGAGGCAAC
Found at i:10986725 original size:20 final size:20
Alignment explanation
Indices: 10986700--10986737 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
10986690 AGTAATGCAT
*
10986700 TTTTAAAAAATAATTACACA
1 TTTTAAAAAATAAATACACA
10986720 TTTTAAAAAATAAATACA
1 TTTTAAAAAATAAATACA
10986738 TCAATATATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.58, C:0.08, G:0.00, T:0.34
Consensus pattern (20 bp):
TTTTAAAAAATAAATACACA
Found at i:10986950 original size:21 final size:22
Alignment explanation
Indices: 10986925--10986982 Score: 61
Period size: 21 Copynumber: 2.7 Consensus size: 22
10986915 ACCTATTTTG
10986925 ATATTTTTTAAATATTA-ATTT
1 ATATTTTTTAAATATTACATTT
10986946 ATATTTATATT--AT-TTACATTT
1 ATATTT-T-TTAAATATTACATTT
10986967 ATATTCTTTTAAATAT
1 ATATT-TTTTAAATAT
10986983 CCAAGATTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 12
0.71 0.00 0.29
Matches are distributed among these distances:
20 5 0.17
21 18 0.60
22 4 0.13
23 3 0.10
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.60
Consensus pattern (22 bp):
ATATTTTTTAAATATTACATTT
Found at i:10986960 original size:15 final size:16
Alignment explanation
Indices: 10986936--10986971 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
10986926 TATTTTTTAA
*
10986936 ATATTAATTTATATTT
1 ATATTAATTTACATTT
10986952 ATATT-ATTTACATTT
1 ATATTAATTTACATTT
10986967 ATATT
1 ATATT
10986972 CTTTTAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 14 0.74
16 5 0.26
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (16 bp):
ATATTAATTTACATTT
Found at i:10987146 original size:21 final size:21
Alignment explanation
Indices: 10987109--10987154 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
10987099 CCGTAAATCA
10987109 TAAACCCCAAACTATAAACCC
1 TAAACCCCAAACTATAAACCC
*
10987130 TAAACCCCAAA-TCATAAACCT
1 TAAACCCCAAACT-ATAAACCC
10987151 TAAA
1 TAAA
10987155 TCTTAAACCC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (21 bp):
TAAACCCCAAACTATAAACCC
Found at i:10987168 original size:14 final size:14
Alignment explanation
Indices: 10987130--10987168 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
10987120 CTATAAACCC
*
10987130 TAAACCCCAAATCA
1 TAAACCCTAAATCA
* *
10987144 TAAACCTTAAATCT
1 TAAACCCTAAATCA
10987158 TAAACCCTAAA
1 TAAACCCTAAA
10987169 CCCTCAATTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.23
Consensus pattern (14 bp):
TAAACCCTAAATCA
Found at i:10987267 original size:21 final size:22
Alignment explanation
Indices: 10987249--10987291 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
10987239 ACCGTAAATC
10987249 TTAAACCC-TAAACCATAAACA
1 TTAAACCCGTAAACCATAAACA
*
10987270 TTAAACCCGTAAACCACAAACA
1 TTAAACCCGTAAACCATAAACA
10987292 ACAACCACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.51, C:0.30, G:0.02, T:0.16
Consensus pattern (22 bp):
TTAAACCCGTAAACCATAAACA
Found at i:10988180 original size:113 final size:113
Alignment explanation
Indices: 10988043--10988541 Score: 606
Period size: 115 Copynumber: 4.4 Consensus size: 113
10988033 TCTATAGCTG
* *
10988043 AAGACCAAACGCTGCGTTTCGGTTAAGATATTTTGCGGTGCTTTTTATATTGCGCCGCTAATACT
1 AAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGTGCTTTTTATATAGCGCCGCTAATACT
* * * *
10988108 GTGATTTAGCGGCGAGTTTCATAAGCGCCACTAATTCTAATATGCCTG
66 GTGCTTTAGCGGCGATTTTCATAAGCGCCACTAATTCTAATATACCTC
* * *
10988156 AAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGTGGCGCTTTTTATATAACGCCGCTAATACT
1 AAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGTGCTTTTTATATAGCGCCGCTAATACT
* * **
10988221 GTGCTTTAGAGGCGTTTTTCATAAGCGCCACTAATTCTGGTATACCTC
66 GTGCTTTAGCGGCGATTTTCATAAGCGCCACTAATTCTAATATACCTC
* * * * * *
10988269 AAGACAAAAACACTGCATTTTTGGTTAAGATGTTTTTCGGTGCTTTTTTTATAGCGCCGCTAATA
1 AAGAC-CAAACGCTGC-GTTTTGGTTAAGATATTTTGCGGTGCTTTTTATATAGCGCCGCTAATA
* * * *
10988334 CTGTGCTTTAGCGGC-ATTTTTCGTAAGTGCCACTAATTTTGATATACCTC
64 CTGTGCTTTAGCGGCGA-TTTTCATAAGCGCCACTAATTCTAATATACCTC
* * * * *
10988384 AAGACCAAAACGCAGCATTTTGGTTAAGATATTTTGCGGTGCTTTTTATATTGTGCCGCTAATGC
1 AAGACC-AAACGCTGCGTTTTGGTTAAGATATTTTGCGGTGCTTTTTATATAGCGCCGCTAATAC
* *
10988449 TGTGCTTTAGCAGCGTTTTTGCATAAGCGCCACTAATTCTAATATACCTC
65 TGTGCTTTAGCGGCGATTTT-CATAAGCGCCACTAATTCTAATATACCTC
* ** * * *
10988499 AAGCCCCTACGCTGCGTTTTGTTTAACAT-TTTCTGCGGCGCTT
1 AAGACCAAACGCTGCGTTTTGGTTAAGATATTT-TGCGGTGCTT
10988542 ACAAATGAAC
Statistics
Matches: 327, Mismatches: 52, Indels: 13
0.83 0.13 0.03
Matches are distributed among these distances:
113 108 0.33
114 93 0.28
115 126 0.39
ACGTcount: A:0.23, C:0.20, G:0.20, T:0.36
Consensus pattern (113 bp):
AAGACCAAACGCTGCGTTTTGGTTAAGATATTTTGCGGTGCTTTTTATATAGCGCCGCTAATACT
GTGCTTTAGCGGCGATTTTCATAAGCGCCACTAATTCTAATATACCTC
Found at i:10988337 original size:228 final size:230
Alignment explanation
Indices: 10988063--10988501 Score: 634
Period size: 228 Copynumber: 1.9 Consensus size: 230
10988053 GCTGCGTTTC
*
10988063 GGTTAAGATATTTTGCGGTGCTTTTTATATTGCGCCGCTAATACTGTGATTTAGCGGCGA-GTTT
1 GGTTAAGATATTTTGCGGTGCTTTTTATATAGCGCCGCTAATACTGTGATTTAGCGGC-ATGTTT
* * * *
10988127 CATAAGCGCCACTAATTCTAATATGCCTGAAGACC-AAACGCTGCGTTTTGGTTAAGATATTTTG
65 CATAAGCGCCACTAATTCTAATATACCTCAAGACCAAAACGCAGCATTTTGGTTAAGATATTTTG
*
10988191 TGGCGCTTTTTATATAACGCCGCTAATACTGTGCTTTAG-AGGCGTTTTT-CATAAGCGCCACTA
130 CGGCGCTTTTTATATAACGCCGCTAATACTGTGCTTTAGCA-GCGTTTTTGCATAAGCGCCACTA
**
10988254 ATTCTGGTATACCTCAAGACAAAAACACTGCATTTTT
194 ATTCTAATATACCTCAAGACAAAAACACTGCATTTTT
* * * * *
10988291 GGTTAAGATGTTTTTCGGTGCTTTTTTTATAGCGCCGCTAATACTGTGCTTTAGCGGCATTTTTC
1 GGTTAAGATATTTTGCGGTGCTTTTTATATAGCGCCGCTAATACTGTGATTTAGCGGCATGTTTC
* * * *
10988356 GTAAGTGCCACTAATTTTGATATACCTCAAGACCAAAACGCAGCATTTTGGTTAAGATATTTTGC
66 ATAAGCGCCACTAATTCTAATATACCTCAAGACCAAAACGCAGCATTTTGGTTAAGATATTTTGC
* *** *
10988421 GGTGCTTTTTATATTGTGCCGCTAATGCTGTGCTTTAGCAGCGTTTTTGCATAAGCGCCACTAAT
131 GGCGCTTTTTATATAACGCCGCTAATACTGTGCTTTAGCAGCGTTTTTGCATAAGCGCCACTAAT
10988486 TCTAATATACCTCAAG
196 TCTAATATACCTCAAG
10988502 CCCCTACGCT
Statistics
Matches: 185, Mismatches: 22, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
227 1 0.01
228 85 0.46
229 68 0.37
230 31 0.17
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.36
Consensus pattern (230 bp):
GGTTAAGATATTTTGCGGTGCTTTTTATATAGCGCCGCTAATACTGTGATTTAGCGGCATGTTTC
ATAAGCGCCACTAATTCTAATATACCTCAAGACCAAAACGCAGCATTTTGGTTAAGATATTTTGC
GGCGCTTTTTATATAACGCCGCTAATACTGTGCTTTAGCAGCGTTTTTGCATAAGCGCCACTAAT
TCTAATATACCTCAAGACAAAAACACTGCATTTTT
Found at i:10992606 original size:22 final size:21
Alignment explanation
Indices: 10992565--10992616 Score: 61
Period size: 22 Copynumber: 2.5 Consensus size: 21
10992555 TCTTATAAAT
*
10992565 TTTTA-TATTTTTTTGAGTTA
1 TTTTATTATTTTTTTAAGTTA
10992585 TTTTATTATTTTTTTAATGTTA
1 TTTTATTATTTTTTTAA-GTTA
* *
10992607 TATAATTATT
1 TTTTATTATT
10992617 AAATTATTTG
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
20 5 0.19
21 10 0.37
22 12 0.44
ACGTcount: A:0.25, C:0.00, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTATTATTTTTTTAAGTTA
Found at i:10998047 original size:13 final size:13
Alignment explanation
Indices: 10998024--10998061 Score: 60
Period size: 13 Copynumber: 3.0 Consensus size: 13
10998014 ACCTTCTGGT
10998024 GGTTC-TAATGGC
1 GGTTCTTAATGGC
10998036 GGTTCTTAATGGC
1 GGTTCTTAATGGC
*
10998049 GGTTTTTAATGGC
1 GGTTCTTAATGGC
10998062 TATTCCTTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
12 5 0.21
13 19 0.79
ACGTcount: A:0.16, C:0.13, G:0.32, T:0.39
Consensus pattern (13 bp):
GGTTCTTAATGGC
Found at i:10998518 original size:27 final size:27
Alignment explanation
Indices: 10998394--10998539 Score: 123
Period size: 27 Copynumber: 5.4 Consensus size: 27
10998384 TCTCGATAAG
* * ** *
10998394 CTATCTCACTTTAAATTTCTAGACAGA
1 CTATCTCACTTTTAATGTCCCGACGGA
* * ** *
10998421 CTATCTCATTTTTAATTTCTTGATGGA
1 CTATCTCACTTTTAATGTCCCGACGGA
* * *
10998448 CTATCCCACTTTTAATGTCCTGATGGA
1 CTATCTCACTTTTAATGTCCCGACGGA
* *
10998475 TTATCTCACTTTTAATGTCCCGGCGGA
1 CTATCTCACTTTTAATGTCCCGACGGA
* *
10998502 CTATTTCACTTTTAATGTCCC-ATCAGA
1 CTATCTCACTTTTAATGTCCCGA-CGGA
10998529 CTATCTCACTT
1 CTATCTCACTT
10998540 GCCATAACTG
Statistics
Matches: 99, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 99 1.00
ACGTcount: A:0.24, C:0.24, G:0.11, T:0.41
Consensus pattern (27 bp):
CTATCTCACTTTTAATGTCCCGACGGA
Done.