Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 4 of 170
Found at i:1120843 original size:43 final size:42
Alignment explanation
Indices: 1120762--1120917 Score: 138
Period size: 43 Copynumber: 3.9 Consensus size: 42
1120752 AAAAATTACC
* * *
1120762 TTTTTTTTTCTTT-T--TTTCCCTTAC-TTCCCTCTTCTTC-
1 TTTTTTTTTCTTTCTCCTTTCCTTTTCTTTCCTTCTTCTTCA
* *
1120799 TTCTTTTTTTCTTTTCTCATTTCCTTTTCTTTCCTTCTTTTTC-
1 TT-TTTTTTTC-TTTCTCCTTTCCTTTTCTTTCCTTCTTCTTCA
1120842 TTTCTTTTTTC-TTCTCCTTTCC---TC-TT-CTTCTTCTTCA
1 TTT-TTTTTTCTTTCTCCTTTCCTTTTCTTTCCTTCTTCTTCA
1120879 TTTTTTTTTCTCTTCTCCTTTCCTTTTTCTTTCCTTCTT
1 TTTTTTTTTCT-TTCTCCTTTCC-TTTTCTTTCCTTCTT
1120918 TTTCTTTCTT
Statistics
Matches: 97, Mismatches: 6, Indels: 25
0.76 0.05 0.20
Matches are distributed among these distances:
36 16 0.16
37 7 0.07
38 21 0.22
39 3 0.03
40 1 0.01
41 10 0.10
42 11 0.11
43 22 0.23
44 6 0.06
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (42 bp):
TTTTTTTTTCTTTCTCCTTTCCTTTTCTTTCCTTCTTCTTCA
Found at i:1120860 original size:36 final size:34
Alignment explanation
Indices: 1120761--1120954 Score: 133
Period size: 36 Copynumber: 5.4 Consensus size: 34
1120751 TAAAAATTAC
* * * *
1120761 CTTTTTTTTTCTTTTTTTCCCTTACTTCCCTCTTCTT
1 CTTTTTCTTTC-TTTTTT-CTTTCCTTTCCT-TTCTT
* * *
1120798 CTTCTTTTTTTCTTTTCTCATTTCCTTTTCTTTCCTT
1 CTT-TTTCTTTCTTTTTTC-TTTCCTTTCCTTT-CTT
1120835 CTTTTTCTTTCTTTTTTCTTCTCCTTTCCTCTTCTT
1 CTTTTTCTTTCTTTTTTCTT-TCCTTTCCT-TTCTT
* *
1120871 CTTCTTCATTTTTTTTTCTCTTCTCCTTTCCTTT-TT
1 CTTTTTC-TTTCTTTTT-TCTT-TCCTTTCCTTTCTT
* * *
1120907 CTTTCCTTCTTT-TTCTTTCTTTCCTCTCCTTCCTT
1 CTTT--TTCTTTCTTTTTTCTTTCCTTTCCTTTCTT
*
1120942 C-CTTTCTTTCTTT
1 CTTTTTCTTTCTTT
1120955 CCCTCTCCTT
Statistics
Matches: 130, Mismatches: 16, Indels: 26
0.76 0.09 0.15
Matches are distributed among these distances:
32 6 0.05
33 2 0.02
34 10 0.08
35 9 0.07
36 42 0.32
37 36 0.28
38 25 0.19
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (34 bp):
CTTTTTCTTTCTTTTTTCTTTCCTTTCCTTTCTT
Found at i:1120869 original size:33 final size:33
Alignment explanation
Indices: 1120832--1120933 Score: 104
Period size: 33 Copynumber: 3.1 Consensus size: 33
1120822 CTTTTCTTTC
1120832 CTTCTTTTTCTTTC-TTTTTTCTTCTCCTTTCCT
1 CTTCTTTTTCTTTCATTTTTTCTTCT-CTTTCCT
* *
1120865 CTTCTTCTTC-TTCATTTTTTTTTCTCTTCTCCT
1 CTTCTTTTTCTTTCATTTTTTCTTCTCTT-TCCT
*
1120898 -TTCCTTTTTCTTTCCTTCTTTTTCTT-TCTTTCCT
1 CTT-CTTTTTCTTT-CAT-TTTTTCTTCTCTTTCCT
1120932 CT
1 CT
1120934 CCTTCCTTCC
Statistics
Matches: 57, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
32 8 0.14
33 29 0.51
34 6 0.11
35 7 0.12
36 7 0.12
ACGTcount: A:0.01, C:0.30, G:0.00, T:0.69
Consensus pattern (33 bp):
CTTCTTTTTCTTTCATTTTTTCTTCTCTTTCCT
Found at i:1120892 original size:22 final size:23
Alignment explanation
Indices: 1120867--1120921 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
1120857 CCTTTCCTCT
*
1120867 TCTTCTTC-TTCATTTTTTTTTC
1 TCTTCTTCTTTCATTTTTCTTTC
* *
1120889 TCTTCTCCTTTCCTTTTTCTTTC
1 TCTTCTTCTTTCATTTTTCTTTC
1120912 -CTTCTT-TTTC
1 TCTTCTTCTTTC
1120922 TTTCTTTCCT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 4 0.14
22 12 0.43
23 12 0.43
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (23 bp):
TCTTCTTCTTTCATTTTTCTTTC
Found at i:1120939 original size:27 final size:27
Alignment explanation
Indices: 1120909--1120965 Score: 89
Period size: 27 Copynumber: 2.1 Consensus size: 27
1120899 TCCTTTTTCT
*
1120909 TTCCTTCTTTTTCTTTCTTT-CCTCTCC
1 TTCCTTC-CTTTCTTTCTTTCCCTCTCC
1120936 TTCCTTCCTTTCTTTCTTTCCCTCTCC
1 TTCCTTCCTTTCTTTCTTTCCCTCTCC
1120963 TTC
1 TTC
1120966 TCCCCCAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 11 0.39
27 17 0.61
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (27 bp):
TTCCTTCCTTTCTTTCTTTCCCTCTCC
Found at i:1120953 original size:80 final size:79
Alignment explanation
Indices: 1120791--1120949 Score: 225
Period size: 80 Copynumber: 2.0 Consensus size: 79
1120781 CTTACTTCCC
* ** *
1120791 TCTTCTTCTTCTTTTTTTCTTTTCTCATTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTTTTCTTC
1 TCTTCTTCTTCTTTTTTTCTCTTCTCATTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCC
1120856 TCCTTTCCTCTTCT
66 TCCTTTCCTCTTCT
*
1120870 TCTTCTTCATT-TTTTTTTCTCTTCTCCTTTCCTTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCT
1 TCTTCTTC-TTCTTTTTTTCTCTTCTCATTTCC-TTTTCTTTCCTTCTTTTTCTTTCTTTCCTCT
1120934 CCTTCC-TTCCT-TTCT
64 CC-TCCTTTCCTCTTCT
1120949 T
1 T
1120950 TCTTTCCCTC
Statistics
Matches: 72, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
79 32 0.44
80 37 0.51
81 3 0.04
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.68
Consensus pattern (79 bp):
TCTTCTTCTTCTTTTTTTCTCTTCTCATTTCCTTTTCTTTCCTTCTTTTTCTTTCTTTCCTCTCC
TCCTTTCCTCTTCT
Found at i:1120956 original size:13 final size:13
Alignment explanation
Indices: 1120896--1120956 Score: 54
Period size: 13 Copynumber: 4.8 Consensus size: 13
1120886 TTCTCTTCTC
1120896 CTTTCCTT--TTT
1 CTTTCCTTCCTTT
*
1120907 CTTTCCTTCTTTTT
1 CTTTCCTTC-CTTT
* *
1120921 CTTTCTTTCCTCT
1 CTTTCCTTCCTTT
*
1120934 CCTTCCTTCCTTT
1 CTTTCCTTCCTTT
*
1120947 CTTTCTTTCC
1 CTTTCCTTCC
1120957 CTCTCCTTCT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
11 8 0.21
13 20 0.51
14 11 0.28
ACGTcount: A:0.00, C:0.36, G:0.00, T:0.64
Consensus pattern (13 bp):
CTTTCCTTCCTTT
Found at i:1121110 original size:26 final size:28
Alignment explanation
Indices: 1121081--1121142 Score: 110
Period size: 26 Copynumber: 2.3 Consensus size: 28
1121071 TTTTTTTGGT
1121081 ATATTTTGGTAAAT-AAAAAAA-TTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
1121107 ATATTTTGGTAAATAAAAAAAAGTTATA
1 ATATTTTGGTAAATAAAAAAAAGTTATA
1121135 ATATTTTG
1 ATATTTTG
1121143 ATTATTTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
26 14 0.41
27 7 0.21
28 13 0.38
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (28 bp):
ATATTTTGGTAAATAAAAAAAAGTTATA
Found at i:1127438 original size:18 final size:20
Alignment explanation
Indices: 1127397--1127440 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
1127387 AATATAATCA
*
1127397 TATCATATTTATAAATACAT
1 TATCATAATTATAAATACAT
1127417 TATCATAATT-TAAATA-AT
1 TATCATAATTATAAATACAT
1127435 TATCAT
1 TATCAT
1127441 TTATTGATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.35
19 6 0.26
20 9 0.39
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.45
Consensus pattern (20 bp):
TATCATAATTATAAATACAT
Found at i:1127965 original size:12 final size:12
Alignment explanation
Indices: 1127948--1127972 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
1127938 AGTCCTTTTA
1127948 AAAATTATAAAG
1 AAAATTATAAAG
1127960 AAAATTATAAAG
1 AAAATTATAAAG
1127972 A
1 A
1127973 TATATGTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.24
Consensus pattern (12 bp):
AAAATTATAAAG
Found at i:1136675 original size:31 final size:31
Alignment explanation
Indices: 1136640--1136705 Score: 82
Period size: 31 Copynumber: 2.1 Consensus size: 31
1136630 ATTTACTTAA
*
1136640 ATGTATACAAT-TGAATTAAAAGT-AAAGTTTC
1 ATGTATA-AATCTGAATCAAAA-TAAAAGTTTC
*
1136671 ATGTATAAATCTGAATCACAATAAAAGTTTC
1 ATGTATAAATCTGAATCAAAATAAAAGTTTC
1136702 ATGT
1 ATGT
1136706 GTATAATTAC
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
30 4 0.13
31 27 0.87
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (31 bp):
ATGTATAAATCTGAATCAAAATAAAAGTTTC
Found at i:1150106 original size:22 final size:22
Alignment explanation
Indices: 1150081--1150123 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
1150071 GATGACCAAC
1150081 TAAGTAGTTTACTC-TTTTTTTA
1 TAAG-AGTTTACTCGTTTTTTTA
* *
1150103 TAAGGGTTTAGTCGTTTTTTT
1 TAAGAGTTTACTCGTTTTTTT
1150124 GGGGCTTGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.19, C:0.07, G:0.16, T:0.58
Consensus pattern (22 bp):
TAAGAGTTTACTCGTTTTTTTA
Found at i:1150264 original size:58 final size:56
Alignment explanation
Indices: 1150122--1150272 Score: 142
Period size: 58 Copynumber: 2.6 Consensus size: 56
1150112 AGTCGTTTTT
* * ** * *
1150122 TTGGGGCTTGTACTTTTTTGGTCCAAAATAGTTTCTAAACTTGGCAATTTTTCCACA
1 TTGGGGCTTGAATTTTTTTGGTCCAAGTTAG-TCCTAAACTTGGCAATTGTTCCACA
* * * *
1150179 TTGGGGCTTGAGCTTTCTTTTTGTCCAAGTTAGTCCTTAACTTGGCAATTGTT-CATGTA
1 TTGGGGCTTGA-ATTT-TTTTGGTCCAAGTTAGTCCTAAACTTGGCAATTGTTCCA--CA
*
1150238 TTGGGGCTTGAATTATTTTTGGTCCAAGTTGGTCC
1 TTGGGGCTTGAATT-TTTTTGGTCCAAGTTAGTCC
1150273 AAGTTAGTTC
Statistics
Matches: 76, Mismatches: 13, Indels: 9
0.78 0.13 0.09
Matches are distributed among these distances:
57 12 0.16
58 38 0.50
59 26 0.34
ACGTcount: A:0.19, C:0.17, G:0.22, T:0.43
Consensus pattern (56 bp):
TTGGGGCTTGAATTTTTTTGGTCCAAGTTAGTCCTAAACTTGGCAATTGTTCCACA
Found at i:1151165 original size:89 final size:86
Alignment explanation
Indices: 1151054--1151296 Score: 251
Period size: 89 Copynumber: 2.8 Consensus size: 86
1151044 CCTGTATTTC
*
1151054 TTTTTACACTCAATTCG-ATACTTGAACTTTTAAAATGCATCAAAAAAACCTTCAAACTTTTTCA
1 TTTTTGCACTCAATT-GAATACTTGAACTTTTAAAATGCATCAAAAAAACCTTCAAA-TTTTTCA
* *
1151118 AAAAAAGTAATTAAGCCCCGCCCTT
64 AAAAAAGCAATTAA-ACCC-CCCTT
* * ** * *
1151143 TTTTTGTACTTAATTGGGTACTTGAACTTTTAAAATGTAT-AAAAAAGACCTTCAATTTTTTTTT
1 TTTTTGCACTCAATTGAATACTTGAACTTTTAAAATGCATCAAAAAA-ACCTTCAA---ATTTTT
***
1151207 CAAAAAAAGCAATTAAACCCTTTTT
62 CAAAAAAAGCAATTAAACCCCCCTT
**
1151232 TTTTTGCACTCAATTGAATACTTGAACCGTTAAAATGCATCAAAAAAA-C-TCTAAATTTTTCAA
1 TTTTTGCACTCAATTGAATACTTGAACTTTTAAAATGCATCAAAAAAACCTTC-AAATTTTTCAA
1151295 AA
65 AA
1151297 TTTAATCCTC
Statistics
Matches: 128, Mismatches: 19, Indels: 18
0.78 0.12 0.11
Matches are distributed among these distances:
85 10 0.08
87 2 0.02
88 10 0.08
89 77 0.60
90 9 0.07
91 20 0.16
ACGTcount: A:0.38, C:0.17, G:0.08, T:0.37
Consensus pattern (86 bp):
TTTTTGCACTCAATTGAATACTTGAACTTTTAAAATGCATCAAAAAAACCTTCAAATTTTTCAAA
AAAAGCAATTAAACCCCCCTT
Found at i:1154303 original size:156 final size:153
Alignment explanation
Indices: 1153992--1154297 Score: 404
Period size: 156 Copynumber: 2.0 Consensus size: 153
1153982 GGTTAAAGCA
* * * * *
1153992 GGAGGTTGAGGAGGTCGTATGCTTGCAGATACAGTTGAGGAGGCAAATAAGCTTGCAAATACACC
1 GGAGGTTGAGGAGGTCGAATGCTTGCAGATACAGTCGAGGACGCAAATAAGCTCGAAAATACACC
* * **
1154057 ACTGCTGCTGCTATTGCTAGCACCACTGCTAACCAGGCTGATGCTACCGCTACAACTTCCATTTA
66 ACCGCTGCTGCTA-T-CTA-CACCACTGCTAACCAAGCTGACACTACCGCTACAACTTCCATTTA
1154122 AGCCAGCCGATGGTGGAGCTGGTGCC
128 AGCCAGCCGATGGTGGAGCTGGTGCC
*
1154148 GGAGGTTGAGGAGGTCGAATGCTTGCAGATACAGTCGAGGACGTAAATAAGCTCGAAAATACACC
1 GGAGGTTGAGGAGGTCGAATGCTTGCAGATACAGTCGAGGACGCAAATAAGCTCGAAAATACACC
* * **
1154213 GCCGCTGCTGCTA-C-A-ACCACTGCTAATCAAGCTGACACTAGTGCTACAACTTCCATTTAAGC
66 ACCGCTGCTGCTATCTACACCACTGCTAACCAAGCTGACACTACCGCTACAACTTCCATTTAAGC
* *
1154275 TAGCCGGA-GGTGGAGCCGGTGCC
131 CAGCC-GATGGTGGAGCTGGTGCC
1154298 AGTGCCATAG
Statistics
Matches: 133, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
150 59 0.44
151 2 0.02
152 1 0.01
153 1 0.01
156 70 0.53
ACGTcount: A:0.26, C:0.25, G:0.27, T:0.22
Consensus pattern (153 bp):
GGAGGTTGAGGAGGTCGAATGCTTGCAGATACAGTCGAGGACGCAAATAAGCTCGAAAATACACC
ACCGCTGCTGCTATCTACACCACTGCTAACCAAGCTGACACTACCGCTACAACTTCCATTTAAGC
CAGCCGATGGTGGAGCTGGTGCC
Found at i:1154322 original size:12 final size:12
Alignment explanation
Indices: 1154306--1154335 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
1154296 CCAGTGCCAT
1154306 AGCTGGTGCTGG
1 AGCTGGTGCTGG
*
1154318 TGCTGGTGCTGG
1 AGCTGGTGCTGG
1154330 AGCTGG
1 AGCTGG
1154336 AGCTTTTTCC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.17, G:0.50, T:0.27
Consensus pattern (12 bp):
AGCTGGTGCTGG
Found at i:1156479 original size:21 final size:21
Alignment explanation
Indices: 1156455--1156494 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
1156445 ATATTAGTAC
*
1156455 TAGAAT-TTATTTATAATATAT
1 TAGAATATTATAT-TAATATAT
1156476 TAGAATATTATATTAATAT
1 TAGAATATTATATTAATAT
1156495 TATTTTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (21 bp):
TAGAATATTATATTAATATAT
Found at i:1163727 original size:79 final size:73
Alignment explanation
Indices: 1163567--1163752 Score: 212
Period size: 75 Copynumber: 2.5 Consensus size: 73
1163557 CATGCATAGT
* * *
1163567 GCACTAAAGATTGATAAAAATTGATCATTGGA-CACACCCACATAAATACATGCATGCATACATA
1 GCACTAAAGATTGAT-AAAATTGACCATTGGACCACACACACACAAATACATGCATGCATACATA
*
1163631 TATATATGC
65 TATATACGC
* * * *
1163640 GCGCTAAAGATCGATAAAAGTTGACCATTGGACGCACACACACACAAATGCATGGATGCATACAT
1 GCACTAAAGATTGATAAAA-TTGACCATTGGAC-CACACACACACAAATACATGCATGCATACAT
1163705 ATATATACCCACGC
64 ATATAT----ACGC
*
1163719 GCACTAAAGATTGATAGAAATTGAGCATTGGACC
1 GCACTAAAGATTGATA-AAATTGACCATTGGACC
1163753 TCATTTGGCT
Statistics
Matches: 94, Mismatches: 11, Indels: 11
0.81 0.09 0.09
Matches are distributed among these distances:
72 4 0.04
73 24 0.26
75 33 0.35
78 1 0.01
79 29 0.31
80 3 0.03
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.23
Consensus pattern (73 bp):
GCACTAAAGATTGATAAAATTGACCATTGGACCACACACACACAAATACATGCATGCATACATAT
ATATACGC
Found at i:1165263 original size:16 final size:16
Alignment explanation
Indices: 1165216--1165263 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
1165206 CAATTTTATT
*
1165216 TTTTTTCTTTTATGTTC
1 TTTTTTC-TTTATTTTC
** *
1165233 TTTTAACTTTTTTTTC
1 TTTTTTCTTTATTTTC
1165249 TTTTTTCTTTATTTT
1 TTTTTTCTTTATTTT
1165264 TCATTCTCTT
Statistics
Matches: 24, Mismatches: 7, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
16 19 0.79
17 5 0.21
ACGTcount: A:0.08, C:0.10, G:0.02, T:0.79
Consensus pattern (16 bp):
TTTTTTCTTTATTTTC
Found at i:1166184 original size:13 final size:11
Alignment explanation
Indices: 1166165--1166215 Score: 61
Period size: 10 Copynumber: 4.6 Consensus size: 11
1166155 ATGAGAACGG
1166165 AGAAAAATAAA
1 AGAAAAATAAA
1166176 AGGGAAAAATAAA
1 A--GAAAAATAAA
1166189 AGAAAAAT-AA
1 AGAAAAATAAA
*
1166199 AGAAATA-AAA
1 AGAAAAATAAA
1166209 AGAAAAA
1 AGAAAAA
1166216 AATTAAATTG
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
10 16 0.46
11 8 0.23
13 11 0.31
ACGTcount: A:0.78, C:0.00, G:0.14, T:0.08
Consensus pattern (11 bp):
AGAAAAATAAA
Found at i:1171766 original size:14 final size:16
Alignment explanation
Indices: 1171731--1171764 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
1171721 AATATCAAAA
*
1171731 TTTTCGAACATTTATT
1 TTTTAGAACATTTATT
1171747 TTTTAGAACATTT-TT
1 TTTTAGAACATTTATT
1171762 TTT
1 TTT
1171765 AGGAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.24, C:0.09, G:0.06, T:0.62
Consensus pattern (16 bp):
TTTTAGAACATTTATT
Found at i:1178157 original size:7 final size:7
Alignment explanation
Indices: 1178142--1178172 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
1178132 TGGGAGGGGT
*
1178142 AACTGTG
1 AACTCTG
1178149 AACTCTG
1 AACTCTG
1178156 AACTCTG
1 AACTCTG
1178163 AACTCTG
1 AACTCTG
1178170 AAC
1 AAC
1178173 GTGGACCATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.26
Consensus pattern (7 bp):
AACTCTG
Found at i:1188972 original size:8 final size:8
Alignment explanation
Indices: 1188959--1188985 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
1188949 TACACAAAAT
1188959 TTTTTATA
1 TTTTTATA
1188967 TTTTTATA
1 TTTTTATA
1188975 TTTTTATA
1 TTTTTATA
1188983 TTT
1 TTT
1188986 ATTGATTTCT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTATA
Found at i:1189726 original size:29 final size:28
Alignment explanation
Indices: 1189684--1189793 Score: 87
Period size: 30 Copynumber: 3.8 Consensus size: 28
1189674 TTAAAACCTT
* *
1189684 CAAAACTTTT-AAAATTTTAATCAAACTC
1 CAAAATTTTTGAAAATTTTAAT-AAACCC
* * * *
1189712 CACAATTTTTGAAAAATCTCATTAAACCC
1 CAAAATTTTTG-AAAATTTTAATAAACCC
* * *
1189741 CTAAAAGTTTTAAAAATTTGAAGTAAACCC
1 C-AAAATTTTTGAAAATTTTAA-TAAACCC
1189771 TCAAAATTTTTGAAAATTTTAAT
1 -CAAAATTTTTGAAAATTTTAAT
1189794 TAGATCAGCC
Statistics
Matches: 62, Mismatches: 15, Indels: 9
0.72 0.17 0.10
Matches are distributed among these distances:
28 8 0.13
29 14 0.23
30 39 0.63
31 1 0.02
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (28 bp):
CAAAATTTTTGAAAATTTTAATAAACCC
Found at i:1189737 original size:59 final size:60
Alignment explanation
Indices: 1189659--1189786 Score: 138
Period size: 59 Copynumber: 2.2 Consensus size: 60
1189649 CTCTAAGCTT
* * * * * *
1189659 TTTTTG-AAATTCTTATTAAAACCTTCAAAACTTTT-AAAATTTTAA-TCAAACTC-CACAA
1 TTTTTGAAAAATCTCATTAAAACCCT-AAAACTTTTAAAAATTTGAAGT-AAACCCTCAAAA
* *
1189717 TTTTTGAAAAATCTCATTAAACCCCTAAAAGTTTTAAAAATTTGAAGTAAACCCTCAAAA
1 TTTTTGAAAAATCTCATTAAAACCCTAAAACTTTTAAAAATTTGAAGTAAACCCTCAAAA
1189777 TTTTTGAAAA
1 TTTTTGAAAA
1189787 TTTTAATTAG
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
58 14 0.24
59 29 0.50
60 15 0.26
ACGTcount: A:0.43, C:0.16, G:0.05, T:0.37
Consensus pattern (60 bp):
TTTTTGAAAAATCTCATTAAAACCCTAAAACTTTTAAAAATTTGAAGTAAACCCTCAAAA
Found at i:1197946 original size:27 final size:28
Alignment explanation
Indices: 1197907--1197961 Score: 85
Period size: 27 Copynumber: 2.0 Consensus size: 28
1197897 TACAGGTAGC
*
1197907 TAAAAAACATTTACTAATAGTTAAGTGA
1 TAAAAAACATTTACTAATAATTAAGTGA
*
1197935 TAAAAAA-ATTTACTAATAATTGAGTGA
1 TAAAAAACATTTACTAATAATTAAGTGA
1197962 CTATGAATAT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 18 0.72
28 7 0.28
ACGTcount: A:0.51, C:0.05, G:0.11, T:0.33
Consensus pattern (28 bp):
TAAAAAACATTTACTAATAATTAAGTGA
Found at i:1204043 original size:21 final size:21
Alignment explanation
Indices: 1204019--1204066 Score: 96
Period size: 21 Copynumber: 2.3 Consensus size: 21
1204009 TTTAAAATTA
1204019 ATTTTTCATTTTTGGTCCTTG
1 ATTTTTCATTTTTGGTCCTTG
1204040 ATTTTTCATTTTTGGTCCTTG
1 ATTTTTCATTTTTGGTCCTTG
1204061 ATTTTT
1 ATTTTT
1204067 AGAATTTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.10, C:0.12, G:0.12, T:0.65
Consensus pattern (21 bp):
ATTTTTCATTTTTGGTCCTTG
Found at i:1205370 original size:24 final size:22
Alignment explanation
Indices: 1205323--1205384 Score: 65
Period size: 24 Copynumber: 2.8 Consensus size: 22
1205313 TGTATATTTA
1205323 ATTTT-ATTTTTTAATTTGTTG
1 ATTTTAATTTTTTAATTTGTTG
1205344 ATTTTAATTTTTTATATTT-TTCGG
1 ATTTTAATTTTTTA-ATTTGTT--G
**
1205368 ATTTTAAAATTTTAATT
1 ATTTTAATTTTTTAATT
1205385 CTGACTCAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
21 5 0.14
22 10 0.29
23 7 0.20
24 13 0.37
ACGTcount: A:0.26, C:0.02, G:0.06, T:0.66
Consensus pattern (22 bp):
ATTTTAATTTTTTAATTTGTTG
Found at i:1217595 original size:265 final size:262
Alignment explanation
Indices: 1216754--1219816 Score: 4868
Period size: 265 Copynumber: 11.6 Consensus size: 262
1216744 ATTGAATCAT
* *
1216754 TTGTTTCCCAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* * * *
1216819 GGTTTTCTTTGGACTGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATATTAT
66 GGTTTTCTTTGGACCGATTTCG-CGATGAATCGGAACTCTTTGTTACCTTGAAAA-AAATATTAT
1216884 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTT
129 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTA-TTTT
*
1216949 ATATGTGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTC
193 ATATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTC
*
1217014 CAGGC
258 CATGC
*
1217019 TTATTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* * * * *
1217084 GGATTTCTTTGGACTGATTTCGGCGGTAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTAT
66 GGTTTTCTTTGGACCGATTTC-GCGATGAATCGGAACTCTTTGTTACCTTG-AAAAAAATATTAT
* * *
1217149 TACATTGACAAATGTTTTAAATTGGATATGTAGACTCAGCTGTGAGAATGCATACGTTTA-TTTA
129 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTA
1217213 TATA--TGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCC
194 TATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCC
1217276 ATGC
259 ATGC
* * *
1217280 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTTTCTTAAAGTGCTATCCCTATTCTCCCTAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
*
1217345 TGTTTTCTTTGGACCGATTTCAGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAGAATATTAT
66 GGTTTTCTTTGGACCGATTTC-GCGATGAATCGGAACTCTTTGTTACCTTGAAAAA-AATATTAT
* *
1217410 TACATTGACAAATGCTTTACATTGGATATATACG-TTCAGCTGTGAGAATGCATACATTTATTTA
129 TACATTGACAAATGCTTTAAATTGGATATGTA-GATTCAGCTGTGAGAATGCATACATTTATTT-
* * *
1217474 TATATATGTGTGTGATGCAATGTTGCTATGTTCTTAGTGTTGACTGAATCATTAGCCCCCCATCT
192 TATATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCT
1217539 CCATGC
257 CCATGC
* *
1217545 TTGTTTCCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTACCCCGAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* * *
1217610 GGTTTTCTTTGGACCGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATATTAT
66 GGTTTTCTTTGGACCGATTTCG-CGATGAATCGGAACTCTTTGTTACCTTGAAAA-AAATATTAT
1217675 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTAT
129 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTT-T
*
1217740 ATATGTGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTC
193 ATATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTC
*
1217805 CAGGC
258 CATGC
*
1217810 TTATTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* * * *
1217875 GGTTTTCTTTGGACTGATTTCGGCGGTAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTAT
66 GGTTTTCTTTGGACCGATTTC-GCGATGAATCGGAACTCTTTGTTACCTTG-AAAAAAATATTAT
* *
1217940 TACATTGACAAATGTTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACGTTTA-TTTA
129 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTA
1218004 TATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCC
194 TATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCC
1218069 ATGC
259 ATGC
* * *
1218073 TTGTTTCCCAGCAGGTGGTGTTGTACTTTAGTTTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* * *
1218138 GGTTTTCTTTGGACCGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATATTAT
66 GGTTTTCTTTGGACCGATTTCG-CGATGAATCGGAACTCTTTGTTACCTTGAAAA-AAATATTAT
1218203 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTT
129 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTA-TTTT
*
1218268 ATATGTGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTC
193 ATATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTC
*
1218333 CAGGC
258 CATGC
* *
1218338 TTATTTCCTAGCAAGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* * * *
1218403 GGTTTTCTTTGGACTGATTTCGGCGGTAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTAT
66 GGTTTTCTTTGGACCGATTTC-GCGATGAATCGGAACTCTTTGTTACCTTG-AAAAAAATATTAT
* *
1218468 TACATTGACAAATGTTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACGTTTA-TTTA
129 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTA
1218532 TATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCC
194 TATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCC
1218597 ATGC
259 ATGC
* * *
1218601 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTTTCTTAAAGTGCTATCCCTATTCTCCCTAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
*
1218666 TGTTTTCTTTGGACCGATTTCAGCGATGAATCGGAACTCTTTGTTACCTTGAAAATAAATATTAT
66 GGTTTTCTTTGGACCGATTTC-GCGATGAATCGGAACTCTTTGTTACCTTGAAAA-AAATATTAT
* *
1218731 TACATTGACAAATGCTTTACATTGGATATATACG-TTCAGCTGTGAGAATGCATACATTTATTTA
129 TACATTGACAAATGCTTTAAATTGGATATGTA-GATTCAGCTGTGAGAATGCATACATTTATTT-
* * *
1218795 TATATATGTGTGTGATGCAATGTTGCTATGTTCTTAGTGTTGACTGAATCATTAGCCCCCCATCT
192 TATATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCT
1218860 CCATGC
257 CCATGC
* *
1218866 TTGTTTCCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTACCCCGAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* * *
1218931 GGTTTTCTTTGGACCGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATATTAT
66 GGTTTTCTTTGGACCGATTTCG-CGATGAATCGGAACTCTTTGTTACCTTGAAAA-AAATATTAT
1218996 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTT
129 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTA-TTTT
*
1219061 ATATGTGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTC
193 ATATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTC
*
1219126 CAGGC
258 CATGC
*
1219131 TTATTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* * * *
1219196 GGTTTTCTTTGGACTGATTTCGGCGGTAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTAT
66 GGTTTTCTTTGGACCGATTTC-GCGATGAATCGGAACTCTTTGTTACCTTG-AAAAAAATATTAT
* *
1219261 TACATTGACAAATGTTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACGTTTA-TTTA
129 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTA
1219325 TATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCC
194 TATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCC
1219390 ATGC
259 ATGC
* * *** *
1219394 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTTTCTTAAAGTGCTATCCCCATTTGTCCTAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* *
1219459 TGTTTCCTTTGGACCGATTTCGGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAGAATATTAT
66 GGTTTTCTTTGGACCGATTTC-GCGATGAATCGGAACTCTTTGTTACCTTGAAAAA-AATATTAT
* *
1219524 TACATTGACAAATGCTTTACATTGGATATATACG-TTCAGCTGTGAGAATGCATACATTTATTTA
129 TACATTGACAAATGCTTTAAATTGGATATGTA-GATTCAGCTGTGAGAATGCATACATTTATTT-
* * * *
1219588 TATATGTGTGTGTGATGCAATGTTGCTATGTTATTAGTGTTGATTGAATCATTAGCCCCCCATCT
192 TATATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCT
1219653 CCATGC
257 CCATGC
* *
1219659 TTGTTTCCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTACCCCGAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* ** *
1219724 GGTTTTCTTTGGACCGATTTCGACAATGAATTAGAATTCTTTGTTACCTT-AAAAAAATATTATT
66 GGTTTTCTTTGGACCGATTTCG-CGATGAATCGGAACTCTTTGTTACCTTGAAAAAAATATTATT
1219788 ACATTGACAAATGCTTTAAATTGGATATG
130 ACATTGACAAATGCTTTAAATTGGATATG
1219817 CTTTTTTTTT
Statistics
Matches: 2586, Mismatches: 179, Indels: 68
0.91 0.06 0.02
Matches are distributed among these distances:
260 5 0.00
261 228 0.09
262 17 0.01
263 763 0.30
264 18 0.01
265 1531 0.59
266 24 0.01
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.39
Consensus pattern (262 bp):
TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
GGTTTTCTTTGGACCGATTTCGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAAATATTATTA
CATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTATA
TATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAT
GC
Found at i:1218221 original size:528 final size:528
Alignment explanation
Indices: 1216754--1219816 Score: 4962
Period size: 528 Copynumber: 5.8 Consensus size: 528
1216744 ATTGAATCAT
* *
1216754 TTGTTTCCCAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* * * * * *
1216819 GGTTTTCTTTGGACTGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATATTAT
66 GGTTTTCTTTGGACCGATTTCGGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAAAATATTAT
1216884 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTT
131 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTA-TTTT
*
1216949 ATATGTGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTC
195 ATATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTC
* * *
1217014 CAGGCTTATTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCG
260 CATGCTTGTTTCCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCG
* * * ** * * *
1217079 AATCCGGATTTCTTTGGACTGATTTCGGCGGTAAACCGGAACTCTTTGTTACCTTGAAAAAAAAT
325 AATCCGGTTTTCTTTGGACCGATTTCGACAATGAATCGGAACTCTTTGTTACCTTGAAAATAAAT
* * *
1217144 ATTATTACATTGACAAATGTTTTAAATTGGATATGTAGACTCAGCTGTGAGAATGCATACGTTTA
390 ATTATTACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTA
1217209 TTTATATA---TGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGA
455 TTTATATATTGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGA
1217271 TCTCCATGC
520 TCTCCATGC
* * *
1217280 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTTTCTTAAAGTGCTATCCCTATTCTCCCTAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* * *
1217345 TGTTTTCTTTGGACCGATTTCAGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAGAATATTAT
66 GGTTTTCTTTGGACCGATTTCGGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAAAATATTAT
* *
1217410 TACATTGACAAATGCTTTACATTGGATATATACG-TTCAGCTGTGAGAATGCATACATTTATTTA
131 TACATTGACAAATGCTTTAAATTGGATATGTA-GATTCAGCTGTGAGAATGCATACATTTATTT-
* * *
1217474 TATATATGTGTGTGATGCAATGTTGCTATGTTCTTAGTGTTGACTGAATCATTAGCCCCCCATCT
194 TATATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCT
*
1217539 CCATGCTTGTTTCCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTACCCC
259 CCATGCTTGTTTCCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCC
* *
1217604 GAATCCGGTTTTCTTTGGACCGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAA
324 GAATCCGGTTTTCTTTGGACCGATTTCGACAATGAATCGGAACTCTTTGTTACCTTGAAAATAAA
1217669 TATTATTACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTT
389 TATTATTACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTT
1217734 ATTTATATATGTGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCC
454 ATTTATATAT-TGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCC
*
1217799 GATCTCCAGGC
518 GATCTCCATGC
*
1217810 TTATTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* * * *
1217875 GGTTTTCTTTGGACTGATTTCGGCGGTAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTAT
66 GGTTTTCTTTGGACCGATTTCGGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAAAATATTAT
* *
1217940 TACATTGACAAATGTTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACGTTTA-TTTA
131 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTA
1218004 TATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCC
196 TATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCC
* *
1218069 ATGCTTGTTTCCCAGCAGGTGGTGTTGTACTTTAGTTTCTTAAAGTGCTATCCCTATTCCCCCGA
261 ATGCTTGTTTCCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGA
* *
1218134 ATCCGGTTTTCTTTGGACCGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATA
326 ATCCGGTTTTCTTTGGACCGATTTCGACAATGAATCGGAACTCTTTGTTACCTTGAAAATAAATA
1218199 TTATTACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTAT
391 TTATTACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTAT
*
1218264 TTTTATATGTGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGA
456 TTATATAT-TGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGA
*
1218329 TCTCCAGGC
520 TCTCCATGC
* *
1218338 TTATTTCCTAGCAAGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* * * *
1218403 GGTTTTCTTTGGACTGATTTCGGCGGTAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTAT
66 GGTTTTCTTTGGACCGATTTCGGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAAAATATTAT
* *
1218468 TACATTGACAAATGTTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACGTTTA-TTTA
131 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTA
1218532 TATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCC
196 TATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCC
* * * *
1218597 ATGCTTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTTTCTTAAAGTGCTATCCCTATTCTCCCTA
261 ATGCTTGTTTCCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGA
* *
1218662 ATCCTGTTTTCTTTGGACCGATTTC-AGCGATGAATCGGAACTCTTTGTTACCTTGAAAATAAAT
326 ATCCGGTTTTCTTTGGACCGATTTCGA-CAATGAATCGGAACTCTTTGTTACCTTGAAAATAAAT
* *
1218726 ATTATTACATTGACAAATGCTTTACATTGGATATATACG-TTCAGCTGTGAGAATGCATACATTT
390 ATTATTACATTGACAAATGCTTTAAATTGGATATGTA-GATTCAGCTGTGAGAATGCATACATTT
* *
1218790 ATTTATATATATGTGTGTGATGCAATGTTGCTATGTTCTTAGTGTTGACTGAATCATTAGCCCCC
454 ATTTATATAT-TGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCC
*
1218855 CATCTCCATGC
518 GATCTCCATGC
* *
1218866 TTGTTTCCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTACCCCGAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* * * * *
1218931 GGTTTTCTTTGGACCGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATATTAT
66 GGTTTTCTTTGGACCGATTTCGGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAAAATATTAT
1218996 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTT
131 TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTA-TTTT
*
1219061 ATATGTGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTC
195 ATATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTC
* * *
1219126 CAGGCTTATTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCG
260 CATGCTTGTTTCCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCG
* * ** * * *
1219191 AATCCGGTTTTCTTTGGACTGATTTCGGCGGTAAACCGGAACTCTTTGTTACCTTGAAAAAAAAT
325 AATCCGGTTTTCTTTGGACCGATTTCGACAATGAATCGGAACTCTTTGTTACCTTGAAAATAAAT
* *
1219256 ATTATTACATTGACAAATGTTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACGTTTA
390 ATTATTACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTA
1219321 TTTATATA-TGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGA
455 TTTATATATTGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGA
1219385 TCTCCATGC
520 TCTCCATGC
* * *** *
1219394 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTTTCTTAAAGTGCTATCCCCATTTGTCCTAATCC
1 TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
* * *
1219459 TGTTTCCTTTGGACCGATTTCGGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAGAATATTAT
66 GGTTTTCTTTGGACCGATTTCGGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAAAATATTAT
* *
1219524 TACATTGACAAATGCTTTACATTGGATATATACG-TTCAGCTGTGAGAATGCATACATTTATTTA
131 TACATTGACAAATGCTTTAAATTGGATATGTA-GATTCAGCTGTGAGAATGCATACATTTATTT-
* * * *
1219588 TATATGTGTGTGTGATGCAATGTTGCTATGTTATTAGTGTTGATTGAATCATTAGCCCCCCATCT
194 TATATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCT
*
1219653 CCATGCTTGTTTCCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTACCCC
259 CCATGCTTGTTTCCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCC
** *
1219718 GAATCCGGTTTTCTTTGGACCGATTTCGACAATGAATTAGAATTCTTTGTTACCTT-AAAA-AAA
324 GAATCCGGTTTTCTTTGGACCGATTTCGACAATGAATCGGAACTCTTTGTTACCTTGAAAATAAA
1219781 TATTATTACATTGACAAATGCTTTAAATTGGATATG
389 TATTATTACATTGACAAATGCTTTAAATTGGATATG
1219817 CTTTTTTTTT
Statistics
Matches: 2376, Mismatches: 146, Indels: 30
0.93 0.06 0.01
Matches are distributed among these distances:
525 3 0.00
526 458 0.19
527 9 0.00
528 1414 0.60
529 6 0.00
530 486 0.20
ACGTcount: A:0.25, C:0.18, G:0.19, T:0.39
Consensus pattern (528 bp):
TTGTTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCC
GGTTTTCTTTGGACCGATTTCGGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAAAATATTAT
TACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTA
TATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCC
ATGCTTGTTTCCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGA
ATCCGGTTTTCTTTGGACCGATTTCGACAATGAATCGGAACTCTTTGTTACCTTGAAAATAAATA
TTATTACATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTAT
TTATATATTGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGAT
CTCCATGC
Found at i:1218475 original size:793 final size:791
Alignment explanation
Indices: 1216521--1219816 Score: 5302
Period size: 793 Copynumber: 4.2 Consensus size: 791
1216511 TGACCCGAAA
* * *
1216521 CAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATACCCCCGAATCTGGTTTTCTTTG
1 CAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTTCTTTG
* *** *
1216586 GACCAATTTCGGTGATGAATTGGAACTCTTTGTTACCTTGAAAATAAATATTATTACATTGACAA
66 GACCGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATATTATTACATTGACAA
* * * *
1216651 ATCCTTTAAATTGGATATGTATATTCAGCTGTGAGAATGCGTACATTTA--TTTATATATATGTG
131 ATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTTATATATGTGTG
* *
1216714 TGATGCAATGCTGCTATGTTCCTACTGTTGATTGAATCA-T---------T-T----G----TTT
196 TGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAGGCTTATTT
*
1216760 CCCAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTT
261 CCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTT
* ** * *
1216825 CTTTGGACTGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATATTATTACATT
326 CTTTGGACTGATTTCGACAATAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTATTACATT
*
1216890 GACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTTATATGT
391 GACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTA--TTTATATAT
1216955 GTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAGGCT
454 GTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAGGCT
1217020 TATTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCG
519 TATTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCG
* * *
1217085 GATTTCTTTGGACTGATTTCGGCGGTAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTATT
584 GTTTTCTTTGGACCGATTTCGGCGATAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTATT
* * * *
1217150 ACATTGACAAATGTTTTAAATTGGATATGTA-GACTCAGCTGTGAGAATGCATACGTTTATTTAT
649 ACATTGACAAATGCTTTAAATTGGATATATACG-TTCAGCTGTGAGAATGCATACATTTATTTAT
*
1217214 ATA--TGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCA
713 ATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCCATCTCCA
1217277 TGCTTGTTTCCTAG
778 TGCTTGTTTCCTAG
* * * * *
1217291 CAGGTGTTGTTGTACTTTAGTTTCTTAAAGTGCTATCCCTATTCTCCCTAATCCTGTTTTCTTTG
1 CAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTTCTTTG
* * *
1217356 GACCGATTTC-AGCGATGAATCGGAACTCTTTGTTACCTTGAAAA-AGAATATTATTACATTGAC
66 GACCGATTTCGA-CAATGAATTGGAATTCTTTGTTACCTTGAAAATA-AATATTATTACATTGAC
* * *
1217419 AAATGCTTTACATTGGATATATACG-TTCAGCTGTGAGAATGCATACATTTATTTATATATATGT
129 AAATGCTTTAAATTGGATATGTA-GATTCAGCTGTGAGAATGCATACATTTATTTTTATATATGT
* * * * *
1217483 GTGTGATGCAATGTTGCTATGTTCTTAGTGTTGACTGAATCATTAGCCCCCCATCTCCATGCTTG
193 GTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAGGCTTA
*
1217548 TTTCCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTACCCCGAATCCGGT
258 TTTCCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGT
* * ** * *
1217613 TTTCTTTGGACCGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATATTATTAC
323 TTTCTTTGGACTGATTTCGACAATAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTATTAC
1217678 ATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTATATA
388 ATTGACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTATATA
1217743 TGTGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAG
453 --TGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAG
1217808 GCTTATTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAAT
516 GCTTATTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAAT
* *
1217873 CCGGTTTTCTTTGGACTGATTTCGGCGGTAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATT
581 CCGGTTTTCTTTGGACCGATTTCGGCGATAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATT
* * *
1217938 ATTACATTGACAAATGTTTTAAATTGGATATGTA-GATTCAGCTGTGAGAATGCATACGTTTATT
646 ATTACATTGACAAATGCTTTAAATTGGATATATACG-TTCAGCTGTGAGAATGCATACATTTATT
*
1218002 TATATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCT
710 TATATATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCCATCT
*
1218067 CCATGCTTGTTTCCCAG
775 CCATGCTTGTTTCCTAG
*
1218084 CAGGTGGTGTTGTACTTTAGTTTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTTCTTTG
1 CAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTTCTTTG
1218149 GACCGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATATTATTACATTGACAA
66 GACCGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATATTATTACATTGACAA
*
1218214 ATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTTATATGTGTGTG
131 ATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTTATATATGTGTG
1218279 TGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAGGCTTATTT
196 TGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAGGCTTATTT
* *
1218344 CCTAGCAAGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTT
261 CCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTT
* **
1218409 CTTTGGACTGATTTCGGCGGTAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTATTACATT
326 CTTTGGACTGATTTCGACAATAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTATTACATT
* *
1218474 GACAAATGTTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACGTTTATTTATATATGT
391 GACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTATATATGT
* *
1218539 GTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCATGCTTG
456 GTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAGGCTTA
* * * *
1218604 TTTCCTAGCAGGTGTTGTTGTACTTTAGTTTCTTAAAGTGCTATCCCTATTCTCCCTAATCCTGT
521 TTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGT
* * * *
1218669 TTTCTTTGGACCGATTTCAGCGATGAATCGGAACTCTTTGTTACCTTGAAAATAAATATTATTAC
586 TTTCTTTGGACCGATTTCGGCGATAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTATTAC
*
1218734 ATTGACAAATGCTTTACATTGGATATATACGTTCAGCTGTGAGAATGCATACATTTATTTATATA
651 ATTGACAAATGCTTTAAATTGGATATATACGTTCAGCTGTGAGAATGCATACATTTA-TT-TATA
* *
1218799 TATGTGTGTGATGCAATGTTGCTATGTTCTTAGTGTTGACTGAATCATTAGCCCCCCATCTCCAT
714 TATGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCCATCTCCAT
1218864 GCTTGTTTCCTAG
779 GCTTGTTTCCTAG
*
1218877 CAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTACCCCGAATCCGGTTTTCTTTG
1 CAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTTCTTTG
1218942 GACCGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATATTATTACATTGACAA
66 GACCGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATATTATTACATTGACAA
*
1219007 ATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTTATATGTGTGTG
131 ATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTTATATATGTGTG
1219072 TGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAGGCTTATTT
196 TGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAGGCTTATTT
*
1219137 CCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTT
261 CCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTT
* **
1219202 CTTTGGACTGATTTCGGCGGTAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTATTACATT
326 CTTTGGACTGATTTCGACAATAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTATTACATT
* *
1219267 GACAAATGTTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACGTTTATTTATATATGT
391 GACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTATATATGT
* *
1219332 GTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCATGCTTG
456 GTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAGGCTTA
* * *** * *
1219397 TTTCCTAGCAGGTGTTGTTGTACTTTAGTTTCTTAAAGTGCTATCCCCATTTGTCCTAATCCTGT
521 TTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGT
* * * *
1219462 TTCCTTTGGACCGATTTCGGCGATGAATCGGAACTCTTTGTTACCTTGAAAAAGAATATTATTAC
586 TTTCTTTGGACCGATTTCGGCGATAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTATTAC
*
1219527 ATTGACAAATGCTTTACATTGGATATATACGTTCAGCTGTGAGAATGCATACATTTATTTATATA
651 ATTGACAAATGCTTTAAATTGGATATATACGTTCAGCTGTGAGAATGCATACATTTATTTATATA
* *
1219592 TGTGTGTGTGATGCAATGTTGCTATGTTATTAGTGTTGATTGAATCATTAGCCCCCCATCTCCAT
716 --TGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCCATCTCCAT
1219657 GCTTGTTTCCTAG
779 GCTTGTTTCCTAG
*
1219670 CAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTACCCCGAATCCGGTTTTCTTTG
1 CAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTTCTTTG
*
1219735 GACCGATTTCGACAATGAATTAGAATTCTTTGTTACCTT-AAAA-AAATATTATTACATTGACAA
66 GACCGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATATTATTACATTGACAA
1219798 ATGCTTTAAATTGGATATG
131 ATGCTTTAAATTGGATATG
1219817 CTTTTTTTTT
Statistics
Matches: 2398, Mismatches: 92, Indels: 51
0.94 0.04 0.02
Matches are distributed among these distances:
769 1 0.00
770 160 0.07
772 47 0.02
773 1 0.00
782 1 0.00
783 1 0.00
787 1 0.00
789 7 0.00
791 727 0.30
792 10 0.00
793 1440 0.60
794 2 0.00
ACGTcount: A:0.25, C:0.18, G:0.18, T:0.39
Consensus pattern (791 bp):
CAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTTCTTTG
GACCGATTTCGACAATGAATTGGAATTCTTTGTTACCTTGAAAATAAATATTATTACATTGACAA
ATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTTTATATATGTGTG
TGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAGGCTTATTT
CCTAGCAGGTGGTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGTTTT
CTTTGGACTGATTTCGACAATAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTATTACATT
GACAAATGCTTTAAATTGGATATGTAGATTCAGCTGTGAGAATGCATACATTTATTTATATATGT
GTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCGATCTCCAGGCTTA
TTTCCTAGCAGGTGTTGTTGTACTTTAGTCTCTTAAAGTGCTATCCCTATTCCCCCGAATCCGGT
TTTCTTTGGACCGATTTCGGCGATAAACCGGAACTCTTTGTTACCTTGAAAAAAAATATTATTAC
ATTGACAAATGCTTTAAATTGGATATATACGTTCAGCTGTGAGAATGCATACATTTATTTATATA
TGTGTGTGATGCAATGCTGCTATGTTCTTAGTGTTGATTGAATCATTAGCCCCCCATCTCCATGC
TTGTTTCCTAG
Found at i:1219984 original size:27 final size:27
Alignment explanation
Indices: 1219954--1220010 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
1219944 GCCTGATCAG
1219954 GCCAATGTGATTGGCAGCACCAAAGGT
1 GCCAATGTGATTGGCAGCACCAAAGGT
* *
1219981 GCCAATGTGATTGGCGGCACCAATGGT
1 GCCAATGTGATTGGCAGCACCAAAGGT
1220008 GCC
1 GCC
1220011 GAAGGACTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.25, G:0.32, T:0.19
Consensus pattern (27 bp):
GCCAATGTGATTGGCAGCACCAAAGGT
Found at i:1220345 original size:19 final size:19
Alignment explanation
Indices: 1220321--1220389 Score: 86
Period size: 19 Copynumber: 3.7 Consensus size: 19
1220311 ATTAAAACAA
1220321 TTTAATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
* *
1220340 TTTAATGTAATAA-ACTAT
1 TTTAATTTAATAACTCTAT
* *
1220358 TCTCATTTAATAACTCTAT
1 TTTAATTTAATAACTCTAT
*
1220377 TTTAATTTTATAA
1 TTTAATTTAATAA
1220390 ATTTAATATA
Statistics
Matches: 40, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
18 14 0.35
19 26 0.65
ACGTcount: A:0.38, C:0.10, G:0.01, T:0.51
Consensus pattern (19 bp):
TTTAATTTAATAACTCTAT
Found at i:1220624 original size:37 final size:37
Alignment explanation
Indices: 1220583--1220678 Score: 174
Period size: 37 Copynumber: 2.6 Consensus size: 37
1220573 ATTTTATATT
*
1220583 TTAAATGAAAATAGAGTTATTAAATGAGAATAGTTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
*
1220620 TTAAATTAAAATAGAGTTATTAAATTAGAATAGTTTA
1 TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
1220657 TTAAATTAAAATAGAGTTATTA
1 TTAAATTAAAATAGAGTTATTA
1220679 CTTAATTAGA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 57 1.00
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (37 bp):
TTAAATTAAAATAGAGTTATTAAATGAGAATAGTTTA
Found at i:1220683 original size:18 final size:19
Alignment explanation
Indices: 1220583--1220678 Score: 124
Period size: 19 Copynumber: 5.2 Consensus size: 19
1220573 ATTTTATATT
*
1220583 TTAAATGAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* * *
1220602 TTAAATGAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
1220620 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
* *
1220639 TTAAATTAGAATAG-TTTA
1 TTAAATTAAAATAGAGTTA
1220657 TTAAATTAAAATAGAGTTA
1 TTAAATTAAAATAGAGTTA
1220676 TTA
1 TTA
1220679 CTTAATTAGA
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
18 31 0.47
19 35 0.53
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (19 bp):
TTAAATTAAAATAGAGTTA
Found at i:1221335 original size:27 final size:28
Alignment explanation
Indices: 1221282--1221343 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
1221272 TTTTTTTAGT
1221282 ATATTTTGATAAATAAAAAAAATTTATA
1 ATATTTTGATAAATAAAAAAAATTTATA
*
1221310 ATATTTTGGTAAATAAAAAAAA-TTATA
1 ATATTTTGATAAATAAAAAAAATTTATA
1221337 ATATTTT
1 ATATTTT
1221344 AGTTATTTTT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
27 12 0.36
28 21 0.64
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (28 bp):
ATATTTTGATAAATAAAAAAAATTTATA
Found at i:1233112 original size:43 final size:43
Alignment explanation
Indices: 1232948--1233199 Score: 197
Period size: 43 Copynumber: 5.8 Consensus size: 43
1232938 GCGTCGCTAA
* * *
1232948 CTTTAGCGGCGTTTTTCCAACAAACGCCGCTAAAGACCATAAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGAC
*** * *
1232991 CTTTTAGCGGCGCTTTTTTTGTA-AAAGCGCAGCTAAAGACCAAGAC
1 C-TTTAGCGGCGC--TTTTCCCACAAA-CGCCGCTAAAGACCATGAC
* * * ** * *
1233037 CTTTAGCGGCGCTTTTACAAAAAAAACTGCTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGAC
* * * * *
1233080 TTTTAGTGGCGCTTTTCCCACAAACGCCGCTAAATA-TATTGAG
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCA-TGAC
*
1233123 CTTTAGCGGCGCTTTTTCCCACAAACGCCGCTATAGA--ATAGAC
1 CTTTAGCGGCGC-TTTTCCCACAAACGCCGCTAAAGACCAT-GAC
* * *
1233166 CTTTAGCGGTGCTTTTCTCACAAACGCCACTAAA
1 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAA
1233200 AATATATCTT
Statistics
Matches: 166, Mismatches: 35, Indels: 17
0.76 0.16 0.08
Matches are distributed among these distances:
42 21 0.13
43 74 0.45
44 35 0.21
45 14 0.08
46 22 0.13
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (43 bp):
CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGAC
Found at i:1233593 original size:43 final size:43
Alignment explanation
Indices: 1233527--1233617 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
1233517 ACATATGCAA
* * * *
1233527 GGTAATAAAATATACAATTCATTTTCTTAATCAACTAAATCTT
1 GGTAATAAAAGATACAATACATTTACTTAATCAACGAAATCTT
* *
1233570 GGTAATAAAAGATATAATACATTTACTTAATCAAGGAAATCTT
1 GGTAATAAAAGATACAATACATTTACTTAATCAACGAAATCTT
1233613 -GTAAT
1 GGTAAT
1233618 GAACTCAAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 5 0.12
43 37 0.88
ACGTcount: A:0.44, C:0.11, G:0.09, T:0.36
Consensus pattern (43 bp):
GGTAATAAAAGATACAATACATTTACTTAATCAACGAAATCTT
Found at i:1237857 original size:21 final size:20
Alignment explanation
Indices: 1237825--1237869 Score: 81
Period size: 21 Copynumber: 2.2 Consensus size: 20
1237815 CCCTAAATCA
1237825 CTAACCCCAACTACTAACCC
1 CTAACCCCAACTACTAACCC
1237845 CTAACCCCTAACTACTAACCC
1 CTAACCCC-AACTACTAACCC
1237866 CTAA
1 CTAA
1237870 ATCTTATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.36, C:0.47, G:0.00, T:0.18
Consensus pattern (20 bp):
CTAACCCCAACTACTAACCC
Found at i:1238110 original size:15 final size:14
Alignment explanation
Indices: 1238067--1238113 Score: 58
Period size: 14 Copynumber: 3.3 Consensus size: 14
1238057 CCTAAATTAC
* * *
1238067 AATCCTTAAACCAA
1 AATCCCTAATCCAT
1238081 AATCCCTAATCCAT
1 AATCCCTAATCCAT
1238095 AATCCCTAATTCCAT
1 AATCCCTAA-TCCAT
1238110 AATC
1 AATC
1238114 TATAAACCTT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
14 20 0.69
15 9 0.31
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.28
Consensus pattern (14 bp):
AATCCCTAATCCAT
Found at i:1238224 original size:22 final size:22
Alignment explanation
Indices: 1238196--1238239 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
1238186 ACACCAAAAT
1238196 AGGCTTTTAGCGGCGTTTTTTA
1 AGGCTTTTAGCGGCGTTTTTTA
1238218 AGGCTTTTAGCGGCGTTTTTTA
1 AGGCTTTTAGCGGCGTTTTTTA
1238240 GCGCCACTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.27, T:0.45
Consensus pattern (22 bp):
AGGCTTTTAGCGGCGTTTTTTA
Found at i:1238411 original size:43 final size:43
Alignment explanation
Indices: 1238271--1238404 Score: 180
Period size: 43 Copynumber: 3.1 Consensus size: 43
1238261 GCGCTCTCAC
* *
1238271 TAGCGGCGCTTTTAC-ACAAACGCCGCTAAAGATCGTGGCCTT
1 TAGCGGCGCTTTTACTAAAAACGCCGCTAAAGATCATGGCCTT
** * * *
1238313 TAGCAACGCTTCTACTACAAACGCCGCTAAAGATCATGGTCTT
1 TAGCGGCGCTTTTACTAAAAACGCCGCTAAAGATCATGGCCTT
* *
1238356 TAGCGGCGCTTTTATTAAAAACGCCGCTAAAGATCATGACCTT
1 TAGCGGCGCTTTTACTAAAAACGCCGCTAAAGATCATGGCCTT
1238399 TAGCGG
1 TAGCGG
1238405 TACTTTTGTC
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
42 12 0.15
43 67 0.85
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (43 bp):
TAGCGGCGCTTTTACTAAAAACGCCGCTAAAGATCATGGCCTT
Found at i:1238490 original size:80 final size:79
Alignment explanation
Indices: 1238337--1238490 Score: 184
Period size: 80 Copynumber: 1.9 Consensus size: 79
1238327 CTACAAACGC
* ** * * *
1238337 CGCTAAAGATCATGGTCTTTAGCGGCGCTTTTATTAAAAACGCCGCTAAAGATCATGACCTTTAG
1 CGCTAAAAATCATGACCTTTAGCGGCGCTTTTATCAAAAACGCCGCTAAAAACCATGACCTTTAG
***
1238402 CGGTACTTTTGTCA
66 CAACACTTTTGTCA
* *
1238416 CGCTAAAAATCATGACCTTTAGCGGCGCTTTT-TGCCACAAACGCTGCTAAAAACCATGACCTTT
1 CGCTAAAAATCATGACCTTTAGCGGCGCTTTTAT--CAAAAACGCCGCTAAAAACCATGACCTTT
1238480 AGCAACACTTT
64 AGCAACACTTT
1238491 CTCACAAACG
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
78 1 0.02
79 29 0.47
80 32 0.52
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (79 bp):
CGCTAAAAATCATGACCTTTAGCGGCGCTTTTATCAAAAACGCCGCTAAAAACCATGACCTTTAG
CAACACTTTTGTCA
Found at i:1238510 original size:42 final size:43
Alignment explanation
Indices: 1238416--1238511 Score: 122
Period size: 44 Copynumber: 2.2 Consensus size: 43
1238406 ACTTTTGTCA
* ** * *
1238416 CGCTAAAAATCATGACCTTTAGCGGCGCTTTTTGCCACAAACGC
1 CGCTAAAAACCATGACCTTTAGCAACACTTTCT-CCACAAACGC
*
1238460 TGCTAAAAACCATGACCTTTAGCAACACTTTCT-CACAAACGC
1 CGCTAAAAACCATGACCTTTAGCAACACTTTCTCCACAAACGC
1238502 CGCTAAAAAC
1 CGCTAAAAAC
1238512 ATGCTTTTAA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 18 0.40
44 27 0.60
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (43 bp):
CGCTAAAAACCATGACCTTTAGCAACACTTTCTCCACAAACGC
Found at i:1240435 original size:3 final size:3
Alignment explanation
Indices: 1240427--1240452 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
1240417 ACATAGATAT
1240427 TTC TTC TTC TTC TTC TTC TTC TTC TT
1 TTC TTC TTC TTC TTC TTC TTC TTC TT
1240453 TTTATACAGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (3 bp):
TTC
Found at i:1241035 original size:21 final size:21
Alignment explanation
Indices: 1241007--1241057 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
1240997 CAATAAGTCA
1241007 AATTTGAAAATTTAAATCGCC
1 AATTTGAAAATTTAAATCGCC
* *
1241028 AGTTTGAAAATTTAAATTGCC
1 AATTTGAAAATTTAAATCGCC
1241049 AATTTGAAA
1 AATTTGAAA
1241058 GCAATAAAGT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.43, C:0.10, G:0.12, T:0.35
Consensus pattern (21 bp):
AATTTGAAAATTTAAATCGCC
Found at i:1243918 original size:33 final size:33
Alignment explanation
Indices: 1243876--1243938 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
1243866 TCTAAATCCT
**
1243876 AAACCCTAACCCGACCCTGAATCCCTAACCCTC
1 AAACCCTAACCCGACCCCAAATCCCTAACCCTC
*
1243909 AAACCCTAACCTGACCCCAAATCCCTAACC
1 AAACCCTAACCCGACCCCAAATCCCTAACC
1243939 TCTAAACATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.33, C:0.48, G:0.05, T:0.14
Consensus pattern (33 bp):
AAACCCTAACCCGACCCCAAATCCCTAACCCTC
Found at i:1243925 original size:19 final size:19
Alignment explanation
Indices: 1243903--1243939 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
1243893 TGAATCCCTA
1243903 ACCCTCAAA-CCCTAACCTG
1 ACCC-CAAATCCCTAACCTG
1243922 ACCCCAAATCCCTAACCT
1 ACCCCAAATCCCTAACCT
1243940 CTAAACATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.32, C:0.49, G:0.03, T:0.16
Consensus pattern (19 bp):
ACCCCAAATCCCTAACCTG
Found at i:1244128 original size:14 final size:15
Alignment explanation
Indices: 1244111--1244142 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
1244101 CTTAAATCAG
1244111 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
1244125 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
1244140 AAT
1 AAT
1244143 ATATAAACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.53
15 8 0.47
ACGTcount: A:0.38, C:0.31, G:0.00, T:0.31
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:1244815 original size:41 final size:41
Alignment explanation
Indices: 1244758--1244876 Score: 184
Period size: 41 Copynumber: 2.9 Consensus size: 41
1244748 ATTTATTATT
* * *
1244758 ATTAGCGGCGCTTTTTCAAAAATGCCGTTAAAGGCCTGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
*
1244799 ATTAGCGGCGCTTTTTCAAAAACACCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
* *
1244840 ATTAGCGGCGCTTCTCCAAAAACGCCGCTAAAGGCCC
1 ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCC
1244877 CAAAACTCAG
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.21
Consensus pattern (41 bp):
ATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGGCCCGAGC
Found at i:1245045 original size:40 final size:40
Alignment explanation
Indices: 1244911--1245045 Score: 147
Period size: 39 Copynumber: 3.5 Consensus size: 40
1244901 GGGCTTAGGC
1244911 TTTTT-GCGGC-TCTTTTTGAAAAA-CGCCGCTAATGCTT-A
1 TTTTTAGCGGCGT-TTTTT-AAAAAGCGCCGCTAATGCTTGA
** *
1244949 TTTTTAGCGGCGTTTTCCAAAAAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTTGA
**
1244989 CCTTTAGCGGCG-TTTTTATAAAAGCG-CGCTAATGCTTGA
1 TTTTTAGCGGCGTTTTTTA-AAAAGCGCCGCTAATGCTTGA
*
1245028 TTTTTAGTGGCGTTTTTT
1 TTTTTAGCGGCGTTTTTT
1245046 GTCCAAGCGC
Statistics
Matches: 80, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
38 10 0.12
39 46 0.57
40 24 0.30
ACGTcount: A:0.20, C:0.20, G:0.21, T:0.39
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTTGA
Found at i:1245526 original size:41 final size:41
Alignment explanation
Indices: 1245462--1245701 Score: 345
Period size: 41 Copynumber: 5.9 Consensus size: 41
1245452 TACAAAAAAG
* * * *
1245462 GCATTAGCGGCGCTTTTTAAAAAACGCCTCTAAAGGCTCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
*
1245503 GCATTAGCGGTGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
** * *
1245544 GCATTAGCGTTGCTTCCTCAAAAATGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
* **
1245585 GCATTAGAGGCGCTTCTTCAAAAACAACGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
* * *
1245626 GCAGTAGCAGCGCTTCTTTAAAAACGCCGCTAAAGGCCCGA
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
1245667 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAG
1 GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAG
1245702 ACCCCCAAAA
Statistics
Matches: 175, Mismatches: 24, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 175 1.00
ACGTcount: A:0.29, C:0.28, G:0.23, T:0.20
Consensus pattern (41 bp):
GCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGA
Found at i:1245866 original size:40 final size:39
Alignment explanation
Indices: 1245742--1245876 Score: 139
Period size: 40 Copynumber: 3.4 Consensus size: 39
1245732 GGGCTTAGCC
* *
1245742 TTTTT-GCGGCGCTTTTCAAAAAACGCCGCTAATGCTT-A
1 TTTTTAGCGGCG-TTTTTAAAAAGCGCCGCTAATGCTTGA
* * *
1245780 TTTTTAGCGGCGTTTTCCAAAAAGTGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTT-TAAAAAGCGCCGCTAATGCTTGA
** *
1245820 CCTTTAGCGGCGTTTTTATAGAAGCGCCGCTAATGCTTGA
1 TTTTTAGCGGCGTTTTTA-AAAAGCGCCGCTAATGCTTGA
* *
1245860 TTTTTAGTGACGTTTTT
1 TTTTTAGCGGCGTTTTT
1245877 TATCCAAACG
Statistics
Matches: 80, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
38 9 0.11
39 25 0.31
40 46 0.57
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.37
Consensus pattern (39 bp):
TTTTTAGCGGCGTTTTTAAAAAGCGCCGCTAATGCTTGA
Found at i:1245889 original size:41 final size:40
Alignment explanation
Indices: 1245742--1245893 Score: 132
Period size: 40 Copynumber: 3.8 Consensus size: 40
1245732 GGGCTTAGCC
* * *
1245742 TTTTT-GCGGCGCTTTTCAAAAAACGCCGCTAATGCTT-A
1 TTTTTAGCGGCGTTTTTTATAAAACGCCGCTAATGCTTGA
** * *
1245780 TTTTTAGCGGCGTTTTCCA-AAAAGTGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTTTTATAAAA-CGCCGCTAATGCTTGA
** *
1245820 CCTTTAGCGGCG-TTTTTATAGAAGCGCCGCTAATGCTTGA
1 TTTTTAGCGGCGTTTTTTATA-AAACGCCGCTAATGCTTGA
* * *
1245860 TTTTTAGTGACGTTTTTTATCCAAACGCCGCTAA
1 TTTTTAGCGGCGTTTTTTAT-AAAACGCCGCTAA
1245894 AAGCCTATTT
Statistics
Matches: 90, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
38 9 0.10
39 27 0.30
40 34 0.38
41 20 0.22
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.35
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTTTATAAAACGCCGCTAATGCTTGA
Found at i:1247570 original size:4 final size:4
Alignment explanation
Indices: 1247554--1247584 Score: 55
Period size: 4 Copynumber: 8.0 Consensus size: 4
1247544 AAGTTTTATT
1247554 TTTA TTT- TTTA TTTA TTTA TTTA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
1247585 CTTAGTTTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.12
4 23 0.88
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:1247998 original size:15 final size:16
Alignment explanation
Indices: 1247978--1248013 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
1247968 TTCTTAGGAC
*
1247978 TTTCTTTATTT-TTTG
1 TTTCTTTATTTCTTTA
1247993 TTTCTTTATTTCTTTA
1 TTTCTTTATTTCTTTA
1248009 TTTCT
1 TTTCT
1248014 ACTTGTGCTG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 11 0.58
16 8 0.42
ACGTcount: A:0.08, C:0.11, G:0.03, T:0.78
Consensus pattern (16 bp):
TTTCTTTATTTCTTTA
Found at i:1248006 original size:8 final size:8
Alignment explanation
Indices: 1247978--1248013 Score: 56
Period size: 8 Copynumber: 4.6 Consensus size: 8
1247968 TTCTTAGGAC
1247978 TTTCTTTA
1 TTTCTTTA
*
1247986 TTT-TTTG
1 TTTCTTTA
1247993 TTTCTTTA
1 TTTCTTTA
1248001 TTTCTTTA
1 TTTCTTTA
1248009 TTTCT
1 TTTCT
1248014 ACTTGTGCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
7 6 0.24
8 19 0.76
ACGTcount: A:0.08, C:0.11, G:0.03, T:0.78
Consensus pattern (8 bp):
TTTCTTTA
Found at i:1253183 original size:19 final size:19
Alignment explanation
Indices: 1253161--1253200 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
1253151 TAAAATTCAA
1253161 TAAATGTT-ATAAAAAATAT
1 TAAATGTTAATAAAAAA-AT
*
1253180 TAAATTTTAATAAAAAAAT
1 TAAATGTTAATAAAAAAAT
1253199 TA
1 TA
1253201 GAAATAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.38
Consensus pattern (19 bp):
TAAATGTTAATAAAAAAAT
Found at i:1253498 original size:18 final size:17
Alignment explanation
Indices: 1253477--1253556 Score: 63
Period size: 18 Copynumber: 4.4 Consensus size: 17
1253467 ATTTTTCTAT
1253477 ATTTTATATTTTTTACGA
1 ATTTTATATTTTTTAC-A
*
1253495 ATTTTATATAATTTTACA
1 ATTTTATAT-TTTTTACA
1253513 ATTTTTATATTTTATTGA-A
1 A-TTTTATATTTT-TT-ACA
* * *
1253532 ATTTAATAGTTTTTATA
1 ATTTTATATTTTTTACA
1253549 ACTTTTAT
1 A-TTTTAT
1253557 TGATTTTTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
16 1 0.02
17 4 0.08
18 27 0.53
19 18 0.35
20 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.04, T:0.60
Consensus pattern (17 bp):
ATTTTATATTTTTTACA
Found at i:1253509 original size:19 final size:17
Alignment explanation
Indices: 1253456--1253526 Score: 72
Period size: 18 Copynumber: 3.9 Consensus size: 17
1253446 GACTTTATGA
*
1253456 AATTTTATAATATTTTTC
1 AATTTTAT-ATATTTTAC
*
1253474 TATATTTTATATTTTTTAC
1 -A-ATTTTATATATTTTAC
1253493 GAATTTTATATAATTTTAC
1 -AATTTTATAT-ATTTTAC
1253512 AATTTT-TATATTTTA
1 AATTTTATATATTTTA
1253527 TTGAAATTTA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
16 6 0.13
17 3 0.07
18 15 0.33
19 15 0.33
20 7 0.15
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.62
Consensus pattern (17 bp):
AATTTTATATATTTTAC
Found at i:1253534 original size:27 final size:29
Alignment explanation
Indices: 1253504--1253559 Score: 71
Period size: 27 Copynumber: 2.0 Consensus size: 29
1253494 AATTTTATAT
*
1253504 AATTTTACAATTTTTAT-A-TTTTATTGA
1 AATTTAACAATTTTTATAACTTTTATTGA
* *
1253531 AATTTAATAGTTTTTATAACTTTTATTGA
1 AATTTAACAATTTTTATAACTTTTATTGA
1253560 TTTTTATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 14 0.58
28 1 0.04
29 9 0.38
ACGTcount: A:0.34, C:0.04, G:0.05, T:0.57
Consensus pattern (29 bp):
AATTTAACAATTTTTATAACTTTTATTGA
Found at i:1253535 original size:37 final size:38
Alignment explanation
Indices: 1253449--1253535 Score: 94
Period size: 37 Copynumber: 2.3 Consensus size: 38
1253439 TTCTTATGAC
* *
1253449 TTTA-TGAAATTTTATAATATTTTTCTATATTTTATAT
1 TTTATTGAAATTTTATAATATTTTACAATATTTTATAT
1253486 TTT-TT-ACGAATTTTAT-ATAATTTTACAAT-TTTTATAT
1 TTTATTGA--AATTTTATAAT-ATTTTACAATATTTTATAT
1253523 TTTATTGAAATTT
1 TTTATTGAAATTT
1253536 AATAGTTTTT
Statistics
Matches: 42, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
36 1 0.02
37 22 0.52
38 18 0.43
39 1 0.02
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.61
Consensus pattern (38 bp):
TTTATTGAAATTTTATAATATTTTACAATATTTTATAT
Found at i:1254352 original size:13 final size:13
Alignment explanation
Indices: 1254312--1254354 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
1254302 TCTCTCTCTC
*
1254312 TTATTTTTTTATT
1 TTATTTTTATATT
*
1254325 TTATTTTTATTTT
1 TTATTTTTATATT
*
1254338 TTATTTTTAAATT
1 TTATTTTTATATT
1254351 TTAT
1 TTAT
1254355 ATGGCAACAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TTATTTTTATATT
Found at i:1257953 original size:13 final size:13
Alignment explanation
Indices: 1257935--1257962 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1257925 ACAAAATTGG
1257935 AAAGATGATAAAT
1 AAAGATGATAAAT
1257948 AAAGATGATAAAT
1 AAAGATGATAAAT
1257961 AA
1 AA
1257963 TAAAATAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.64, C:0.00, G:0.14, T:0.21
Consensus pattern (13 bp):
AAAGATGATAAAT
Found at i:1259206 original size:26 final size:26
Alignment explanation
Indices: 1259148--1259222 Score: 75
Period size: 26 Copynumber: 2.9 Consensus size: 26
1259138 GCCTCGTTAT
1259148 ATGGCT-TTTCGTGAGCTTTCC-GATTA
1 ATGGCTCTTT-GTGAGC-TTCCTGATTA
**
1259174 AAAGCTCTTTGTGAGCTTCCTGATTA
1 ATGGCTCTTTGTGAGCTTCCTGATTA
**
1259200 ATGGCTCTCAG-GAGCTTCCTGAT
1 ATGGCTCTTTGTGAGCTTCCTGAT
1259223 ATAGCTCGCT
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
25 16 0.39
26 22 0.54
27 3 0.07
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (26 bp):
ATGGCTCTTTGTGAGCTTCCTGATTA
Found at i:1266088 original size:182 final size:181
Alignment explanation
Indices: 1265743--1266094 Score: 544
Period size: 182 Copynumber: 1.9 Consensus size: 181
1265733 CTAGAAAGTG
*
1265743 TTGTTAAATAAACTGTACAAGGAAATAGTTAGGCACATCAACTCCAATAGCCTTTAGTTAAGCCT
1 TTGTTAAATAAACTGCACAAGGAAATAGTTAGGCACATCAACTCCAATAGCCTTTAGTTAAGCCT
* * * *
1265808 AATATCCTTCATTTCCATGATGACATTAAATTAGTGAACTTTATTGATGGTATTTTTCTCATTAT
66 AATATCCATCATTTCCATGATGACATTAAACTAGTGAACTTCATTGATGATATTTTTCTCATTAT
* ** * *
1265873 GGTATTATCTAGGGTTTTATCAGAAGGTTCAAATTATTCATCAATGGCGTC
131 GGTACTATCTAGAATTTCATCAGAAGATTCAAATTATTCATCAATGGCGTC
* * *
1265924 TTGTTAAATAAAGTGCACAAGGAAATAGTTAGGCACGTCAACTTCAATAGCCTTTAGTTAAGCCG
1 TTGTTAAATAAACTGCACAAGGAAATAGTTAGGCACATCAACTCCAATAGCCTTTAGTTAAGCC-
1265989 TAATATCCATCATTTCCATGATGACATTAAACTAGTGAACTTCATTGATGATATTTTTCTCATTA
65 TAATATCCATCATTTCCATGATGACATTAAACTAGTGAACTTCATTGATGATATTTTTCTCATTA
* *
1266054 TGGTGCTATCTAGAATTTCAT-ATGAAGATTCAAATTGTTCA
130 TGGTACTATCTAGAATTTCATCA-GAAGATTCAAATTATTCA
1266095 ACATTCAATA
Statistics
Matches: 154, Mismatches: 15, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
181 61 0.40
182 93 0.60
ACGTcount: A:0.32, C:0.16, G:0.15, T:0.37
Consensus pattern (181 bp):
TTGTTAAATAAACTGCACAAGGAAATAGTTAGGCACATCAACTCCAATAGCCTTTAGTTAAGCCT
AATATCCATCATTTCCATGATGACATTAAACTAGTGAACTTCATTGATGATATTTTTCTCATTAT
GGTACTATCTAGAATTTCATCAGAAGATTCAAATTATTCATCAATGGCGTC
Found at i:1266628 original size:17 final size:16
Alignment explanation
Indices: 1266591--1266641 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 16
1266581 TTAGATCAAC
1266591 AAATAATTTAAAAATAATAA
1 AAAT-ATTT-AAAA-AAT-A
1266611 AAATATTTAAAAAATA
1 AAATATTTAAAAAATA
1266627 AAATATTTTAAAAAA
1 AAATA-TTTAAAAAA
1266642 AAAGATAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
16 6 0.20
17 12 0.40
18 4 0.13
19 4 0.13
20 4 0.13
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (16 bp):
AAATATTTAAAAAATA
Found at i:1271452 original size:11 final size:11
Alignment explanation
Indices: 1271436--1271465 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
1271426 TGGAAATTTA
1271436 AAAAAAAAAAG
1 AAAAAAAAAAG
*
1271447 AAAAAAATAAG
1 AAAAAAAAAAG
1271458 AAAAAAAA
1 AAAAAAAA
1271466 CATAGGTTCA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.90, C:0.00, G:0.07, T:0.03
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:1272288 original size:77 final size:77
Alignment explanation
Indices: 1272184--1272486 Score: 500
Period size: 77 Copynumber: 3.9 Consensus size: 77
1272174 GGGAATTGGA
* *
1272184 AATTAGGGTTTTTTATTTGAAGTTCAATTTGTGTAATTATATTGACCAAAGGAATAGCCTTTGAT
1 AATTAGGGTTTTTGA-TTGGAGTTCAATTTGTGTAATTATATTGACCAAAGGAATAGCCTTTGAT
*
1272249 AAGGATAACTGAG
65 AAGGATAACTGGG
*
1272262 AATTAGGGTTTTTGATTGGAGTTCAATTTGTGTAGTTATATTGACCAAAGGAATAGCCTTTGATA
1 AATTAGGGTTTTTGATTGGAGTTCAATTTGTGTAATTATATTGACCAAAGGAATAGCCTTTGATA
**
1272327 AGGATATTTGGG
66 AGGATAACTGGG
*
1272339 AATTAGGGTTTTTAATTGGAGTTCAATTTGTGTAATTATATTGACCAAAGGAATAGCCTTTGATA
1 AATTAGGGTTTTTGATTGGAGTTCAATTTGTGTAATTATATTGACCAAAGGAATAGCCTTTGATA
1272404 AGGATAACTGGG
66 AGGATAACTGGG
* *
1272416 AATTAGGGTTTTTGATTTGTGTTCAATTTGTGTAATT-TAATTGACCAAAGGAATAGCCTTTGAT
1 AATTAGGGTTTTTGATTGGAGTTCAATTTGTGTAATTAT-ATTGACCAAAGGAATAGCCTTTGAT
1272480 AAGGATA
65 AAGGATA
1272487 GACTTTAAAG
Statistics
Matches: 211, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
76 1 0.00
77 196 0.93
78 14 0.07
ACGTcount: A:0.31, C:0.07, G:0.23, T:0.39
Consensus pattern (77 bp):
AATTAGGGTTTTTGATTGGAGTTCAATTTGTGTAATTATATTGACCAAAGGAATAGCCTTTGATA
AGGATAACTGGG
Found at i:1278615 original size:19 final size:19
Alignment explanation
Indices: 1278587--1278629 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
1278577 ATTACCCTTG
*
1278587 ATGCATATG-ATGAAATGTA
1 ATGCAGATGAATGAAATG-A
1278606 ATGCAGATGAATGAAATGA
1 ATGCAGATGAATGAAATGA
1278625 ATGCA
1 ATGCA
1278630 AAAAAGAGAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (19 bp):
ATGCAGATGAATGAAATGA
Found at i:1283699 original size:15 final size:14
Alignment explanation
Indices: 1283647--1283707 Score: 50
Period size: 15 Copynumber: 3.9 Consensus size: 14
1283637 AATATTCGTT
*
1283647 TTTGTTTTCTTTCC
1 TTTGTTTTCTTTTC
1283661 TTTTGTTTGCTTCTGTTTC
1 -TTTG-TT--TTCT-TTTC
1283680 TTTGTTTTCTTTTC
1 TTTGTTTTCTTTTC
*
1283694 TGTTGTCTTCTTTT
1 T-TTGTTTTCTTTT
1283708 GCTTGCGTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
14 5 0.13
15 19 0.49
16 2 0.05
17 2 0.05
18 8 0.21
19 3 0.08
ACGTcount: A:0.00, C:0.16, G:0.11, T:0.72
Consensus pattern (14 bp):
TTTGTTTTCTTTTC
Found at i:1291535 original size:29 final size:29
Alignment explanation
Indices: 1291503--1291559 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
1291493 AAAAGCCATT
1291503 TTTTTTCAA-AATTTACCGAAATGGGCCAC
1 TTTTTT-AATAATTTACCGAAATGGGCCAC
* *
1291532 TTTTTTAATTATTTACCGGAATGGGCCA
1 TTTTTTAATAATTTACCGAAATGGGCCA
1291560 ATTTCGCGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 23 0.92
ACGTcount: A:0.28, C:0.18, G:0.16, T:0.39
Consensus pattern (29 bp):
TTTTTTAATAATTTACCGAAATGGGCCAC
Found at i:1291796 original size:22 final size:22
Alignment explanation
Indices: 1291763--1291818 Score: 94
Period size: 22 Copynumber: 2.5 Consensus size: 22
1291753 TTTTCACAAA
*
1291763 CAAATATTCTCTCAATTTCCTTC
1 CAAA-ATTCTCTCAAATTCCTTC
1291786 CAAAATTCTCTCAAATTCCTTC
1 CAAAATTCTCTCAAATTCCTTC
1291808 CAAAATTCTCT
1 CAAAATTCTCT
1291819 TAAACTCTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 28 0.88
23 4 0.12
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.39
Consensus pattern (22 bp):
CAAAATTCTCTCAAATTCCTTC
Found at i:1291857 original size:52 final size:53
Alignment explanation
Indices: 1291771--1291870 Score: 148
Period size: 52 Copynumber: 1.9 Consensus size: 53
1291761 AACAAATATT
* * * *
1291771 CTCTCAATTTCCTTCCAAAATTCTCTCAAATTCCTTCCAAAAT-TCTCTTAAA
1 CTCTCAAATTCCTTCCAAAATCCTCCCAAATTCCTTCAAAAATCTCTCTTAAA
*
1291823 CTCTCAAATTCCTTCCAAAATCCTCCCAATTTCCTTCAAAAATCTCTC
1 CTCTCAAATTCCTTCCAAAATCCTCCCAAATTCCTTCAAAAATCTCTC
1291871 AAATCCATAT
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
52 38 0.90
53 4 0.10
ACGTcount: A:0.30, C:0.34, G:0.00, T:0.36
Consensus pattern (53 bp):
CTCTCAAATTCCTTCCAAAATCCTCCCAAATTCCTTCAAAAATCTCTCTTAAA
Found at i:1291942 original size:30 final size:28
Alignment explanation
Indices: 1291906--1291964 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 28
1291896 ATTCAATTTC
1291906 ATTTTTTTAAAGAAAATTTTAAATATTTTT
1 ATTTTTTTAAA-AAAATTTTAAA-ATTTTT
*
1291936 ATTTTTTTAAAATAATTTTAAAATTTTT
1 ATTTTTTTAAAAAAATTTTAAAATTTTT
1291964 A
1 A
1291965 ATATTTTCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 7 0.25
29 10 0.36
30 11 0.39
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (28 bp):
ATTTTTTTAAAAAAATTTTAAAATTTTT
Found at i:1291971 original size:29 final size:30
Alignment explanation
Indices: 1291909--1291971 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
1291899 CAATTTCATT
*
1291909 TTTTTAAAGAAAATTTTAAATATTTTTATT
1 TTTTTAAAGAAAATTTTAAATATTTTTATA
*
1291939 TTTTTAAA-ATAATTTTAAA-ATTTTTAATA
1 TTTTTAAAGAAAATTTTAAATATTTTT-ATA
1291968 TTTT
1 TTTT
1291972 CAACAATGGC
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
28 6 0.20
29 16 0.53
30 8 0.27
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.59
Consensus pattern (30 bp):
TTTTTAAAGAAAATTTTAAATATTTTTATA
Found at i:1293054 original size:7 final size:7
Alignment explanation
Indices: 1293042--1293087 Score: 92
Period size: 7 Copynumber: 6.6 Consensus size: 7
1293032 AGTGGATTGA
1293042 TATTTAG
1 TATTTAG
1293049 TATTTAG
1 TATTTAG
1293056 TATTTAG
1 TATTTAG
1293063 TATTTAG
1 TATTTAG
1293070 TATTTAG
1 TATTTAG
1293077 TATTTAG
1 TATTTAG
1293084 TATT
1 TATT
1293088 ATGTATATAA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 39 1.00
ACGTcount: A:0.28, C:0.00, G:0.13, T:0.59
Consensus pattern (7 bp):
TATTTAG
Found at i:1293967 original size:24 final size:24
Alignment explanation
Indices: 1293940--1293995 Score: 85
Period size: 24 Copynumber: 2.3 Consensus size: 24
1293930 GCATGGCTTT
* *
1293940 CAAACTCCGTCGCCGTTCATGATG
1 CAAACACCGTCACCGTTCATGATG
*
1293964 CAAACACTGTCACCGTTCATGATG
1 CAAACACCGTCACCGTTCATGATG
1293988 CAAACACC
1 CAAACACC
1293996 TCCGCATACA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.29, C:0.34, G:0.16, T:0.21
Consensus pattern (24 bp):
CAAACACCGTCACCGTTCATGATG
Found at i:1294355 original size:29 final size:29
Alignment explanation
Indices: 1294275--1294606 Score: 454
Period size: 29 Copynumber: 11.5 Consensus size: 29
1294265 TTTTGATATT
*
1294275 ATTTGATTAAAAACCCTAA-CCTAATTTA
1 ATTTAATTAAAAACCCTAACCCTAATTTA
*
1294303 ATTTAATTAAAAACCC-AAACCTAATTTA
1 ATTTAATTAAAAACCCTAACCCTAATTTA
1294331 ATTTAATTAAAAACCCTAACCCTAATTTA
1 ATTTAATTAAAAACCCTAACCCTAATTTA
***
1294360 ATTTAATTAAAAACCCTAACCCTAACCCA
1 ATTTAATTAAAAACCCTAACCCTAATTTA
* *
1294389 TTTTAATTAAAAACCCTAACCCTAGTTTA
1 ATTTAATTAAAAACCCTAACCCTAATTTA
*
1294418 ATTTAATTAAAAACCCTAACCCTAGTTTA
1 ATTTAATTAAAAACCCTAACCCTAATTTA
1294447 ATTTAATTAAAAACCCTAACCCTAATTTA
1 ATTTAATTAAAAACCCTAACCCTAATTTA
* *
1294476 ATTTAATTAAAAACCCTAACCTTAACTTA
1 ATTTAATTAAAAACCCTAACCCTAATTTA
* * **
1294505 TTTTAATT-AAAACCCTAAACCTTAACCTA
1 ATTTAATTAAAAACCCT-AACCCTAATTTA
***
1294534 ATTTAATTAAAAACCCTAACCCTAACCCA
1 ATTTAATTAAAAACCCTAACCCTAATTTA
* **
1294563 TTTTAATTAAAAACCCTAACCCTAAACTA
1 ATTTAATTAAAAACCCTAACCCTAATTTA
1294592 ATTTAATTAAAAACC
1 ATTTAATTAAAAACC
1294607 TATTTTAATT
Statistics
Matches: 277, Mismatches: 23, Indels: 7
0.90 0.07 0.02
Matches are distributed among these distances:
27 2 0.01
28 48 0.17
29 219 0.79
30 8 0.03
ACGTcount: A:0.44, C:0.22, G:0.01, T:0.33
Consensus pattern (29 bp):
ATTTAATTAAAAACCCTAACCCTAATTTA
Found at i:1297425 original size:124 final size:124
Alignment explanation
Indices: 1297204--1297484 Score: 442
Period size: 124 Copynumber: 2.3 Consensus size: 124
1297194 CCACGAGGGC
* * *
1297204 GCGATTTGACACTATTTGCTCAGAAACGTCAAAAAATAATTATTTCCTACATGACCAACTGTAGC
1 GCGATTTTATACTATTTGCTCAGAAACGTC-AAAAATAATTATTTCCTACATGACCAACTGTACC
* **
1297269 GAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAT-ATAGCATCCTGGTATCA
65 GAAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTC-TGATAGCATCCTGGTAGAA
*
1297329 GCGATTTTATACTATTTGCTCAGAAAACGTCAAAAA-AATTATTTCTTACATGACCAACTGTACC
1 GCGATTTTATACTATTTGCTCAG-AAACGTCAAAAATAATTATTTCCTACATGACCAACTGTACC
1297393 GAAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCTGATAGCATCCTGGTAGAA
65 GAAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCTGATAGCATCCTGGTAGAA
1297453 GCGATTTTATACTATTTGAC-CAGAAACGTCAA
1 GCGATTTTATACTATTTG-CTCAGAAACGTCAA
1297485 CTCGAAATAA
Statistics
Matches: 146, Mismatches: 7, Indels: 8
0.91 0.04 0.05
Matches are distributed among these distances:
123 10 0.07
124 102 0.70
125 27 0.18
126 7 0.05
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (124 bp):
GCGATTTTATACTATTTGCTCAGAAACGTCAAAAATAATTATTTCCTACATGACCAACTGTACCG
AAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCTGATAGCATCCTGGTAGAA
Found at i:1298410 original size:2 final size:2
Alignment explanation
Indices: 1298403--1298440 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
1298393 AAAAACAGTT
1298403 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1298441 ACACATCTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:1299376 original size:9 final size:9
Alignment explanation
Indices: 1299362--1299393 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
1299352 TTTGGTTAAA
1299362 AATTACCCG
1 AATTACCCG
1299371 AATTACCCG
1 AATTACCCG
*
1299380 AATTAACCG
1 AATTACCCG
1299389 AATTA
1 AATTA
1299394 TCGAAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.41, C:0.25, G:0.09, T:0.25
Consensus pattern (9 bp):
AATTACCCG
Found at i:1299793 original size:11 final size:11
Alignment explanation
Indices: 1299777--1299802 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
1299767 TTTTTTTTAT
1299777 TTTTAAAATAC
1 TTTTAAAATAC
1299788 TTTTAAAATAC
1 TTTTAAAATAC
1299799 TTTT
1 TTTT
1299803 TTTAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.54
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:1299843 original size:21 final size:20
Alignment explanation
Indices: 1299812--1299895 Score: 70
Period size: 21 Copynumber: 4.2 Consensus size: 20
1299802 TTTTAAATTT
*
1299812 TTTTTAA-TTTTAAAATACA
1 TTTTTAATTTTTAAAATAAA
*
1299831 TTTTTAATTTTT----TTAA
1 TTTTTAATTTTTAAAATAAA
*
1299847 TTTTAAAATATTTTTAAAATAAA
1 TTTT-TAA--TTTTTAAAATAAA
1299870 TTTTTTAATTTTTAAAATAAA
1 -TTTTTAATTTTTAAAATAAA
1299891 TTTTT
1 TTTTT
1299896 GGTATTTATT
Statistics
Matches: 51, Mismatches: 5, Indels: 17
0.70 0.07 0.23
Matches are distributed among these distances:
16 6 0.12
17 2 0.04
19 12 0.24
20 9 0.18
21 13 0.25
23 5 0.10
24 4 0.08
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.60
Consensus pattern (20 bp):
TTTTTAATTTTTAAAATAAA
Found at i:1303009 original size:11 final size:11
Alignment explanation
Indices: 1302993--1303017 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1302983 GATTATGCTC
1302993 TTTGATGGTGT
1 TTTGATGGTGT
1303004 TTTGATGGTGT
1 TTTGATGGTGT
1303015 TTT
1 TTT
1303018 CTGTTTGGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.00, G:0.32, T:0.60
Consensus pattern (11 bp):
TTTGATGGTGT
Found at i:1310943 original size:85 final size:84
Alignment explanation
Indices: 1310801--1310962 Score: 270
Period size: 85 Copynumber: 1.9 Consensus size: 84
1310791 ATTGATAGGC
* * * *
1310801 TGAGGAGGATGGGACTTGTAAAACAGTTCACTCGGTGGGTTGAGAGTCGTAAAGTGAGGGTTTGA
1 TGAGGAGGATGGGACTTGTAAAACAATTCACTCGATGGGCTGAGAGTCGTAAAGTGAGAGTTTGA
1310866 AGTAAAAGAGTTTATGGAT
66 AGTAAAAGAGTTTATGGAT
*
1310885 TGAGGAGGATGGGGACTTGTAAGACAATTCACTCGATGGGCTGAGAGTCGTAAAGTGAGAGTTTG
1 TGAGGAGGAT-GGGACTTGTAAAACAATTCACTCGATGGGCTGAGAGTCGTAAAGTGAGAGTTTG
1310950 AAGTAAAAGAGTT
65 AAGTAAAAGAGTT
1310963 GAAGACAAGG
Statistics
Matches: 72, Mismatches: 5, Indels: 1
0.92 0.06 0.01
Matches are distributed among these distances:
84 10 0.14
85 62 0.86
ACGTcount: A:0.31, C:0.08, G:0.35, T:0.26
Consensus pattern (84 bp):
TGAGGAGGATGGGACTTGTAAAACAATTCACTCGATGGGCTGAGAGTCGTAAAGTGAGAGTTTGA
AGTAAAAGAGTTTATGGAT
Found at i:1311230 original size:22 final size:24
Alignment explanation
Indices: 1311205--1311254 Score: 59
Period size: 22 Copynumber: 2.2 Consensus size: 24
1311195 GAACTTTTTT
1311205 AATTGAGTTTTGAA-ATTTTTA-A
1 AATTGAGTTTTGAATATTTTTATA
***
1311227 AATTTTTTTTTGAATATTTTTATA
1 AATTGAGTTTTGAATATTTTTATA
1311251 AATT
1 AATT
1311255 TTAATGTGGC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 11 0.48
23 7 0.30
24 5 0.22
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (24 bp):
AATTGAGTTTTGAATATTTTTATA
Found at i:1311256 original size:23 final size:22
Alignment explanation
Indices: 1311212--1311256 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
1311202 TTTAATTGAG
1311212 TTTTGAAATTTTTAAAATTTTT
1 TTTTGAAATTTTTAAAATTTTT
1311234 TTTTGAATATTTTTATAAATTTT
1 TTTTGAA-ATTTTTA-AAATTTT
1311257 AATGTGGCGT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.33
23 7 0.33
24 7 0.33
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.64
Consensus pattern (22 bp):
TTTTGAAATTTTTAAAATTTTT
Found at i:1316911 original size:14 final size:14
Alignment explanation
Indices: 1316892--1316918 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
1316882 TACATATTTC
1316892 TAATAATTTTAATT
1 TAATAATTTTAATT
1316906 TAATAATTTTAAT
1 TAATAATTTTAAT
1316919 GTTCGTTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TAATAATTTTAATT
Found at i:1317276 original size:15 final size:15
Alignment explanation
Indices: 1317253--1317286 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
1317243 CCCACCAAAT
*
1317253 CACCCCCACCGACAC
1 CACCACCACCGACAC
*
1317268 CACCACCACCGTCAC
1 CACCACCACCGACAC
1317283 CACC
1 CACC
1317287 TCTTCCTCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.26, C:0.65, G:0.06, T:0.03
Consensus pattern (15 bp):
CACCACCACCGACAC
Found at i:1323405 original size:44 final size:46
Alignment explanation
Indices: 1323320--1323413 Score: 147
Period size: 46 Copynumber: 2.1 Consensus size: 46
1323310 TTTTAAAGAC
*
1323320 TAAAAAAATAATTTTATTCGCTTTAAAATAAAAAAATTAAAACAAT
1 TAAAAAAATAATTGTATTCGCTTTAAAATAAAAAAATTAAAACAAT
* *
1323366 TAAAAATATAATTGTATTTGCTTTAAAAT-AAAAAA-TAAAACAAT
1 TAAAAAAATAATTGTATTCGCTTTAAAATAAAAAAATTAAAACAAT
1323410 TAAA
1 TAAA
1323414 TTAAATTCGA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 13 0.29
45 6 0.13
46 26 0.58
ACGTcount: A:0.59, C:0.05, G:0.03, T:0.33
Consensus pattern (46 bp):
TAAAAAAATAATTGTATTCGCTTTAAAATAAAAAAATTAAAACAAT
Found at i:1331467 original size:29 final size:29
Alignment explanation
Indices: 1331435--1331504 Score: 95
Period size: 29 Copynumber: 2.4 Consensus size: 29
1331425 ACCAGGCCGC
** *
1331435 GTGAGCCATTCGGCTGTGTGGCAGGTCGT
1 GTGAGCCACACGGCTGTGTGGCAGATCGT
*
1331464 GTGAGCCACACGGCTTTGTGGCAGATCGT
1 GTGAGCCACACGGCTGTGTGGCAGATCGT
*
1331493 GTGAGCTACACG
1 GTGAGCCACACG
1331505 CCTGCGTGAC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.16, C:0.23, G:0.37, T:0.24
Consensus pattern (29 bp):
GTGAGCCACACGGCTGTGTGGCAGATCGT
Found at i:1331715 original size:62 final size:62
Alignment explanation
Indices: 1331642--1331759 Score: 157
Period size: 62 Copynumber: 1.9 Consensus size: 62
1331632 CAGACACAGG
* * * *
1331642 TGTGTGTCTAGG-CTGTGTAACTTACTGTTTGTGGTATAAAGCCACACAGCCAGGGATATGTA
1 TGTGTGCCTAGGTC-GTGTAACTCACTATTTGTGGTATAAAACCACACAGCCAGGGATATGTA
* * *
1331704 TGTGTGCCTAGGTCGTGTATCTCACTATTTGTGGTATAAAACCACACGGTCAGGGA
1 TGTGTGCCTAGGTCGTGTAACTCACTATTTGTGGTATAAAACCACACAGCCAGGGA
1331760 CACAGGCTTG
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
62 47 0.98
63 1 0.02
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (62 bp):
TGTGTGCCTAGGTCGTGTAACTCACTATTTGTGGTATAAAACCACACAGCCAGGGATATGTA
Found at i:1341733 original size:25 final size:25
Alignment explanation
Indices: 1341682--1341738 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 25
1341672 ATTAAGCTTT
1341682 CAAAAAAGTGTAAACATCATATCTACC
1 CAAAAAAGTGTAAACATCATA-CTA-C
*
1341709 CAAAAAAGTGTAAAGATCATA-TAC
1 CAAAAAAGTGTAAACATCATACTAC
1341733 CAAAAA
1 CAAAAA
1341739 TGGGTTAGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
24 7 0.24
25 2 0.07
27 20 0.69
ACGTcount: A:0.54, C:0.18, G:0.09, T:0.19
Consensus pattern (25 bp):
CAAAAAAGTGTAAACATCATACTAC
Found at i:1342710 original size:109 final size:109
Alignment explanation
Indices: 1342531--1342737 Score: 362
Period size: 109 Copynumber: 1.9 Consensus size: 109
1342521 TAACAGAGAA
* * *
1342531 ACTTGATTGATATATTATAGATATTTTGATAACTCGATTAGAATGCTTTAAAGTTTGGTGATCAA
1 ACTTAATTGATATATTATAGATATTTTGATAACTCAATTAGAATGCTTTAAAGTTTAGTGATCAA
1342596 TTTAAAATCTGAATAACAGGTGGTGGAGGTTTGCTAACGGAGGG
66 TTTAAAATCTGAATAACAGGTGGTGGAGGTTTGCTAACGGAGGG
*
1342640 ACTTAATTGTTATATTACT-GATATTTTGATAACTCAATTAGAATGCTTTAAAGTTTAGTGATCA
1 ACTTAATTGATATATTA-TAGATATTTTGATAACTCAATTAGAATGCTTTAAAGTTTAGTGATCA
1342704 ATTTAAAATCTGAATAACAGGTGGTGGAGGTTTG
65 ATTTAAAATCTGAATAACAGGTGGTGGAGGTTTG
1342738 GTGAAATTAA
Statistics
Matches: 93, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
109 92 0.99
110 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.21, T:0.38
Consensus pattern (109 bp):
ACTTAATTGATATATTATAGATATTTTGATAACTCAATTAGAATGCTTTAAAGTTTAGTGATCAA
TTTAAAATCTGAATAACAGGTGGTGGAGGTTTGCTAACGGAGGG
Found at i:1345370 original size:31 final size:31
Alignment explanation
Indices: 1345318--1345410 Score: 100
Period size: 31 Copynumber: 3.0 Consensus size: 31
1345308 TTGGTATACT
*
1345318 GTACTTATA-TTTAGTTTTAATGTTCAATTTG
1 GTACTTA-AGTTTAATTTTAATGTTCAATTTG
* *
1345349 GTA-TCTGAGTTTAATTTTAATGTTCAGTTTG
1 GTACT-TAAGTTTAATTTTAATGTTCAATTTG
* * *
1345380 GTACTTAAGTTTGACTTTAATATTCAATTTG
1 GTACTTAAGTTTAATTTTAATGTTCAATTTG
1345411 ATTTTTGATT
Statistics
Matches: 51, Mismatches: 8, Indels: 6
0.78 0.12 0.09
Matches are distributed among these distances:
30 2 0.04
31 48 0.94
32 1 0.02
ACGTcount: A:0.26, C:0.08, G:0.15, T:0.52
Consensus pattern (31 bp):
GTACTTAAGTTTAATTTTAATGTTCAATTTG
Found at i:1346589 original size:14 final size:15
Alignment explanation
Indices: 1346570--1346598 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
1346560 CAACCAACAA
1346570 TTTTAATTTT-AATT
1 TTTTAATTTTCAATT
1346584 TTTTAATTTTCAATT
1 TTTTAATTTTCAATT
1346599 ACGTATGCAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.69
Consensus pattern (15 bp):
TTTTAATTTTCAATT
Found at i:1346633 original size:19 final size:19
Alignment explanation
Indices: 1346609--1346649 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
1346599 ACGTATGCAA
1346609 TTTATTATAAAATGTTTAT
1 TTTATTATAAAATGTTTAT
1346628 TTTATTATAAAATGTTTAT
1 TTTATTATAAAATGTTTAT
1346647 TTT
1 TTT
1346650 TTTAATTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (19 bp):
TTTATTATAAAATGTTTAT
Found at i:1353179 original size:30 final size:29
Alignment explanation
Indices: 1353133--1353189 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 29
1353123 TATTTCTTTT
1353133 AAAAATTTTGAAAAATTTTAATTAAGCCC
1 AAAAATTTTGAAAAATTTTAATTAAGCCC
* *
1353162 AAAAATCTTTTAAAAATTTTCATTAAGC
1 AAAAAT-TTTGAAAAATTTTAATTAAGC
1353190 TCCTAATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 6 0.24
30 19 0.76
ACGTcount: A:0.47, C:0.11, G:0.05, T:0.37
Consensus pattern (29 bp):
AAAAATTTTGAAAAATTTTAATTAAGCCC
Found at i:1358741 original size:9 final size:9
Alignment explanation
Indices: 1358727--1358771 Score: 56
Period size: 9 Copynumber: 5.1 Consensus size: 9
1358717 AATTATTTTT
1358727 TAAAAAATA
1 TAAAAAATA
*
1358736 TAAAAAAAA
1 TAAAAAATA
*
1358745 TCAAAAA-A
1 TAAAAAATA
*
1358753 TAAAAAGTA
1 TAAAAAATA
1358762 TAAAAAATA
1 TAAAAAATA
1358771 T
1 T
1358772 TTTTAAATTT
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
8 6 0.20
9 24 0.80
ACGTcount: A:0.76, C:0.02, G:0.02, T:0.20
Consensus pattern (9 bp):
TAAAAAATA
Found at i:1363721 original size:14 final size:15
Alignment explanation
Indices: 1363693--1363721 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
1363683 TCACTGCTAC
1363693 AAAGGAGAGGAAAGA
1 AAAGGAGAGGAAAGA
1363708 AAAGGAGA-GAAAGA
1 AAAGGAGAGGAAAGA
1363722 GACGACAGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (15 bp):
AAAGGAGAGGAAAGA
Found at i:1364167 original size:3 final size:3
Alignment explanation
Indices: 1364154--1364184 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
1364144 TCCCAAGGTT
*
1364154 ACC ATC ACC ACC ACC ACC ACC ACC ACC ACC A
1 ACC ACC ACC ACC ACC ACC ACC ACC ACC ACC A
1364185 TCAAGCAGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.35, C:0.61, G:0.00, T:0.03
Consensus pattern (3 bp):
ACC
Found at i:1373215 original size:24 final size:23
Alignment explanation
Indices: 1373160--1373215 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 23
1373150 TCCAGGCTGT
*
1373160 ATAACAGGAAGCTCTTGAGAGCC
1 ATAACAGGAAGCTCATGAGAGCC
* *
1373183 ATATTCAGGAAGCTCATGTGAGCC
1 ATA-ACAGGAAGCTCATGAGAGCC
1373207 AATAACAGG
1 -ATAACAGG
1373216 TAACTCCAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 3 0.11
24 21 0.78
25 3 0.11
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.20
Consensus pattern (23 bp):
ATAACAGGAAGCTCATGAGAGCC
Found at i:1373371 original size:26 final size:27
Alignment explanation
Indices: 1373311--1373380 Score: 97
Period size: 26 Copynumber: 2.6 Consensus size: 27
1373301 TCATTAATCA
* *
1373311 GGAAGCTCACAAAGAGCCAATTTAACT
1 GGAAGCTCACAAAGAGCCAATGTAACG
*
1373338 GGAAGCTCACGAAGAGCC-ATGTAACG
1 GGAAGCTCACAAAGAGCCAATGTAACG
*
1373364 GGACGCTCACAAAGAGC
1 GGAAGCTCACAAAGAGC
1373381 TGTGGTATGT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
26 21 0.55
27 17 0.45
ACGTcount: A:0.37, C:0.24, G:0.26, T:0.13
Consensus pattern (27 bp):
GGAAGCTCACAAAGAGCCAATGTAACG
Found at i:1374677 original size:14 final size:14
Alignment explanation
Indices: 1374658--1374688 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
1374648 GGAATTGTTT
*
1374658 TAATCTAAATTTAC
1 TAATCTAAATTAAC
1374672 TAATCTAAATTAAC
1 TAATCTAAATTAAC
1374686 TAA
1 TAA
1374689 GAACCCGGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (14 bp):
TAATCTAAATTAAC
Found at i:1376409 original size:5 final size:5
Alignment explanation
Indices: 1376399--1376443 Score: 55
Period size: 4 Copynumber: 10.0 Consensus size: 5
1376389 TATAGATATA
1376399 CTTTT CTTTT CTTTT CTTTT C-TTT C-TTT C-TTT C-TTT CTTTT -TTTT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT
1376444 TTCAACATGA
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
4 20 0.51
5 19 0.49
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
CTTTT
Found at i:1377435 original size:6 final size:6
Alignment explanation
Indices: 1377417--1377460 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
1377407 TAAATAGAAG
* *
1377417 AAAATA ACAATA AACATA AAAATA AAAATA AAAAT- AAAATA AAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAA
1377461 CAAAATAGAC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
5 5 0.15
6 28 0.85
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:1381702 original size:36 final size:36
Alignment explanation
Indices: 1381662--1381732 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
1381652 ACCACTTTTA
* * * *
1381662 AATATTACAACTATATCATTATGCCGAATCACTTAC
1 AATATTACAAATACATCAATAGGCCGAATCACTTAC
1381698 AATATTACAAATACATCAATAGGCCGAATCACTTA
1 AATATTACAAATACATCAATAGGCCGAATCACTTA
1381733 TAAGTTTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.30
Consensus pattern (36 bp):
AATATTACAAATACATCAATAGGCCGAATCACTTAC
Found at i:1382028 original size:43 final size:43
Alignment explanation
Indices: 1381939--1382067 Score: 125
Period size: 43 Copynumber: 3.0 Consensus size: 43
1381929 GGCTCGTACA
* * ** * * *
1381939 ATGCCAACGTCCCGGACGTGGTCTTACATGTAATCACATATTG
1 ATGCCAATGTCCCAGACACGGTCTTACACGTAAACACATATCG
*
1381982 ATGCCACTGTCCCAGACACGGTCTTACACGTAAACACA-AGTCG
1 ATGCCAATGTCCCAGACACGGTCTTACACGTAAACACATA-TCG
* *** *
1382025 ATGCCAATGTCTCAGATGTGGTCTTACACGAAAACACATATCG
1 ATGCCAATGTCCCAGACACGGTCTTACACGTAAACACATATCG
1382068 GAATCCGATG
Statistics
Matches: 70, Mismatches: 14, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
42 1 0.01
43 68 0.97
44 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACACGGTCTTACACGTAAACACATATCG
Found at i:1386351 original size:14 final size:14
Alignment explanation
Indices: 1386332--1386362 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
1386322 GGAATTGTTT
*
1386332 TAATCTAAATTTAC
1 TAATCTAAATTAAC
1386346 TAATCTAAATTAAC
1 TAATCTAAATTAAC
1386360 TAA
1 TAA
1386363 GAACCCGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (14 bp):
TAATCTAAATTAAC
Found at i:1398220 original size:104 final size:105
Alignment explanation
Indices: 1398040--1398307 Score: 450
Period size: 104 Copynumber: 2.6 Consensus size: 105
1398030 TAACCGTTAT
* **
1398040 TGGTGGATCTCGCACTTAGCACCACCGCTGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1398105 AATCAGCACATAGCAACCCCC-TTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
*
1398144 TGGTGGATATCGCACTTAGCACCACCAATGAACCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1 TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
1398209 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
66 AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
* **
1398249 TGGTGGATCA-CGCACATAGCACCACCAATGAATCGGGGAATCAGCACACAGCAACCCCT
1 TGGTGGAT-ATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCT
1398308 TTATATACAA
Statistics
Matches: 154, Mismatches: 8, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
104 82 0.53
105 71 0.46
106 1 0.01
ACGTcount: A:0.30, C:0.31, G:0.21, T:0.19
Consensus pattern (105 bp):
TGGTGGATATCGCACTTAGCACCACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTCGGGGG
AATCAGCACATAGCAACCCCCTTTTCACATTTCAAAGATA
Found at i:1398667 original size:29 final size:29
Alignment explanation
Indices: 1398634--1398697 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
1398624 TAATCCACCA
1398634 CCCAACTTTTTG-AAAATTACAATTTTGCC
1 CCCAAC-TTTTGCAAAATTACAATTTTGCC
* * *
1398663 CCCAAACTTTTGCATAATTACACTTTTGTC
1 CCC-AACTTTTGCAAAATTACAATTTTGCC
1398693 CCCAA
1 CCCAA
1398698 GCTCGGAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.30, C:0.28, G:0.06, T:0.36
Consensus pattern (29 bp):
CCCAACTTTTGCAAAATTACAATTTTGCC
Found at i:1398671 original size:30 final size:30
Alignment explanation
Indices: 1398641--1398697 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
1398631 CCACCCAACT
1398641 TTTTG-AAAATTACAATTTTGCCCCCAAAC
1 TTTTGCAAAATTACAATTTTGCCCCCAAAC
* * *
1398670 TTTTGCATAATTACACTTTTGTCCCCAA
1 TTTTGCAAAATTACAATTTTGCCCCCAA
1398698 GCTCGGAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 5 0.21
30 19 0.79
ACGTcount: A:0.30, C:0.25, G:0.07, T:0.39
Consensus pattern (30 bp):
TTTTGCAAAATTACAATTTTGCCCCCAAAC
Found at i:1400755 original size:26 final size:27
Alignment explanation
Indices: 1400693--1400762 Score: 97
Period size: 26 Copynumber: 2.6 Consensus size: 27
1400683 CCATTAATCA
* *
1400693 GGAAGCTCACAAAGAGCCAATTTAATG
1 GGAAGCTCACAAAGAGCCAATGTAACG
*
1400720 GGAAGCTCACGAAGAGCC-ATGTAACG
1 GGAAGCTCACAAAGAGCCAATGTAACG
*
1400746 GGACGCTCACAAAGAGC
1 GGAAGCTCACAAAGAGC
1400763 TGTGGTATGT
Statistics
Matches: 38, Mismatches: 5, Indels: 1
0.86 0.11 0.02
Matches are distributed among these distances:
26 21 0.55
27 17 0.45
ACGTcount: A:0.37, C:0.23, G:0.27, T:0.13
Consensus pattern (27 bp):
GGAAGCTCACAAAGAGCCAATGTAACG
Found at i:1408310 original size:27 final size:27
Alignment explanation
Indices: 1408272--1408326 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
1408262 AAAATAAGAG
1408272 TAAGAATCACATGACGAATGAGTAGAT
1 TAAGAATCACATGACGAATGAGTAGAT
1408299 TAAGAATCACATGACGAATGAGTAGAT
1 TAAGAATCACATGACGAATGAGTAGAT
1408326 T
1 T
1408327 CAAAGATTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.11, G:0.22, T:0.24
Consensus pattern (27 bp):
TAAGAATCACATGACGAATGAGTAGAT
Found at i:1414839 original size:66 final size:66
Alignment explanation
Indices: 1414718--1414842 Score: 180
Period size: 66 Copynumber: 1.9 Consensus size: 66
1414708 AAATAATTTT
* * *
1414718 AAATAATATCAAATAAATTAATGTTTTTGGTCAGTTTAATTTGGGAATTCGAAAAAAAGATAATT
1 AAATAATATAAAATAAATAAATGTTTTTGGTCAGTTCAATTTGGGAATTCGAAAAAAAGATAATT
1414783 A
66 A
* *
1414784 AAATAATATAAAATAAATCAAAT-TTTTTGGTCAAGTTCAATTTGGGGATTCAAAAAAAA
1 AAATAATATAAAATAAAT-AAATGTTTTTGGTC-AGTTCAATTTGGGAATTCGAAAAAAA
1414843 AAGATAATAG
Statistics
Matches: 52, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
66 26 0.50
67 26 0.50
ACGTcount: A:0.47, C:0.06, G:0.13, T:0.34
Consensus pattern (66 bp):
AAATAATATAAAATAAATAAATGTTTTTGGTCAGTTCAATTTGGGAATTCGAAAAAAAGATAATT
A
Found at i:1420637 original size:18 final size:19
Alignment explanation
Indices: 1420592--1420642 Score: 54
Period size: 18 Copynumber: 2.7 Consensus size: 19
1420582 TCCAAGTCAG
1420592 ATAAA-AAAATTAAAATAA
1 ATAAATAAAATTAAAATAA
*
1420610 ATAACTAAAA-TAAAAT-A
1 ATAAATAAAATTAAAATAA
1420627 ATAAATCAAAAATTAA
1 ATAAAT--AAAATTAA
1420643 GTAAGCAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
17 6 0.22
18 10 0.37
19 8 0.30
20 3 0.11
ACGTcount: A:0.73, C:0.04, G:0.00, T:0.24
Consensus pattern (19 bp):
ATAAATAAAATTAAAATAA
Found at i:1421550 original size:11 final size:11
Alignment explanation
Indices: 1421534--1421615 Score: 59
Period size: 11 Copynumber: 7.5 Consensus size: 11
1421524 ATTTTTTTAA
1421534 TTTTAAAATTT
1 TTTTAAAATTT
1421545 TTTTAAAATACTTTT
1 TTTT-AAA-A--TTT
1421560 TTTTAAAATTT
1 TTTTAAAATTT
1421571 TTTT--AA---
1 TTTTAAAATTT
*
1421577 TTTTAAAATAT
1 TTTTAAAATTT
*
1421588 TTTTAAAATACT
1 TTTTAAAAT-TT
1421600 TTTT-AAATTT
1 TTTTAAAATTT
1421610 TTTTAA
1 TTTTAA
1421616 TTTTAAAATA
Statistics
Matches: 58, Mismatches: 2, Indels: 22
0.71 0.02 0.27
Matches are distributed among these distances:
6 4 0.07
8 2 0.03
9 2 0.03
10 5 0.09
11 25 0.43
12 8 0.14
13 2 0.03
14 3 0.05
15 7 0.12
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTAAAATTT
Found at i:1421630 original size:11 final size:11
Alignment explanation
Indices: 1421577--1421636 Score: 60
Period size: 11 Copynumber: 5.9 Consensus size: 11
1421567 ATTTTTTTAA
1421577 TTTTAAAATAT
1 TTTTAAAATAT
1421588 TTTTAAAATACT
1 TTTTAAAATA-T
1421600 TTTT-AAAT-T
1 TTTTAAAATAT
*
1421609 TTTT----TAA
1 TTTTAAAATAT
1421616 TTTTAAAATAT
1 TTTTAAAATAT
1421627 TTTTAAAATA
1 TTTTAAAATA
1421637 AATTTTTTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 12
0.75 0.04 0.22
Matches are distributed among these distances:
6 1 0.02
7 4 0.10
9 5 0.12
11 26 0.63
12 5 0.12
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:1421654 original size:39 final size:40
Alignment explanation
Indices: 1421511--1421652 Score: 171
Period size: 39 Copynumber: 3.5 Consensus size: 40
1421501 GCCCGAATAT
* * *
1421511 AATAAATATTTTTATTTTTTTAATTTTAAAATTTTTTTAA
1 AATAAATTTTTTTAATTTTTTAATTTTAAAATATTTTTAA
**
1421551 AATACTTTTTTTTAAAATTTTTTTAATTTTAAAATATTTTTAA
1 AATAAATTTTTTT--AA-TTTTTTAATTTTAAAATATTTTTAA
* *
1421594 AAT--ACTTTTTAAATTTTTTTAATTTTAAAATATTTTTAA
1 AATAAATTTTTTTAA-TTTTTTAATTTTAAAATATTTTTAA
1421633 AATAAATTTTTTTAATTTTT
1 AATAAATTTTTTTAATTTTT
1421653 AAAATAAATT
Statistics
Matches: 87, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
39 31 0.36
40 15 0.17
41 13 0.15
42 1 0.01
43 27 0.31
ACGTcount: A:0.37, C:0.01, G:0.00, T:0.61
Consensus pattern (40 bp):
AATAAATTTTTTTAATTTTTTAATTTTAAAATATTTTTAA
Done.