Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 42 of 170
Found at i:12006142 original size:17 final size:17
Alignment explanation
Indices: 12006122--12006159 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
12006112 CATAGAATAA
12006122 AATATGAATATTTTAAT
1 AATATGAATATTTTAAT
12006139 AATATGAATATTTTAAT
1 AATATGAATATTTTAAT
12006156 AATA
1 AATA
12006160 CAGACATAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (17 bp):
AATATGAATATTTTAAT
Found at i:12017225 original size:45 final size:45
Alignment explanation
Indices: 12017158--12017244 Score: 129
Period size: 45 Copynumber: 1.9 Consensus size: 45
12017148 ATGATGTTAG
* * * *
12017158 GTATTTAATATATTGTTGAAAAATGGAATGTTGTTAAATTATTAT
1 GTATTTAACATATTGTTAAAAAATGAAATATTGTTAAATTATTAT
*
12017203 GTATTTAGCATATTGTTAAAAAATGAAATATTGTTAAATTAT
1 GTATTTAACATATTGTTAAAAAATGAAATATTGTTAAATTAT
12017245 GAATTGAAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 37 1.00
ACGTcount: A:0.40, C:0.01, G:0.14, T:0.45
Consensus pattern (45 bp):
GTATTTAACATATTGTTAAAAAATGAAATATTGTTAAATTATTAT
Found at i:12017452 original size:21 final size:21
Alignment explanation
Indices: 12017427--12017507 Score: 72
Period size: 21 Copynumber: 3.9 Consensus size: 21
12017417 TGAGCTTCTG
*
12017427 TTAACTCATATGAGTTTCAGT
1 TTAACTCTTATGAGTTTCAGT
* * *
12017448 TTAACCCTTATGGGTTTCCGT
1 TTAACTCTTATGAGTTTCAGT
* * * *
12017469 TCAGCTCTTTTGAGCTTCAGT
1 TTAACTCTTATGAGTTTCAGT
* *
12017490 TTAACCCTTATGGGTTTC
1 TTAACTCTTATGAGTTTC
12017508 CATTCAGCTC
Statistics
Matches: 43, Mismatches: 17, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.19, C:0.21, G:0.17, T:0.43
Consensus pattern (21 bp):
TTAACTCTTATGAGTTTCAGT
Found at i:12017489 original size:42 final size:42
Alignment explanation
Indices: 12017437--12017519 Score: 148
Period size: 42 Copynumber: 2.0 Consensus size: 42
12017427 TTAACTCATA
* *
12017437 TGAGTTTCAGTTTAACCCTTATGGGTTTCCGTTCAGCTCTTT
1 TGAGCTTCAGTTTAACCCTTATGGGTTTCCATTCAGCTCTTT
12017479 TGAGCTTCAGTTTAACCCTTATGGGTTTCCATTCAGCTCTT
1 TGAGCTTCAGTTTAACCCTTATGGGTTTCCATTCAGCTCTT
12017520 ACGAGTTTTC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.16, C:0.23, G:0.18, T:0.43
Consensus pattern (42 bp):
TGAGCTTCAGTTTAACCCTTATGGGTTTCCATTCAGCTCTTT
Found at i:12017538 original size:42 final size:42
Alignment explanation
Indices: 12017450--12017549 Score: 130
Period size: 42 Copynumber: 2.4 Consensus size: 42
12017440 GTTTCAGTTT
* ** * *
12017450 AACCCTTATGGGTTTCCGTTCAGCTCTTTTGAGCTTCAGTTT
1 AACCCTTATGGGTTTCCATTCAGCTCTTACGAGCTTCACTTC
*
12017492 AACCCTTATGGGTTTCCATTCAGCTCTTACGAGTTTTC-CTTC
1 AACCCTTATGGGTTTCCATTCAGCTCTTACGAG-CTTCACTTC
12017534 AACCCTTATGGGTTTC
1 AACCCTTATGGGTTTC
12017550 TGTTTAGCAC
Statistics
Matches: 51, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
42 48 0.94
43 3 0.06
ACGTcount: A:0.16, C:0.26, G:0.17, T:0.41
Consensus pattern (42 bp):
AACCCTTATGGGTTTCCATTCAGCTCTTACGAGCTTCACTTC
Found at i:12017548 original size:21 final size:22
Alignment explanation
Indices: 12017492--12017548 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 22
12017482 GCTTCAGTTT
12017492 AACCCTTATGGG-TTTCCATTC
1 AACCCTTATGGGTTTTCCATTC
* * * *
12017513 AGCTCTTACGAGTTTTCC-TTC
1 AACCCTTATGGGTTTTCCATTC
12017534 AACCCTTATGGGTTT
1 AACCCTTATGGGTTT
12017549 CTGTTTAGCA
Statistics
Matches: 27, Mismatches: 8, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
21 22 0.81
22 5 0.19
ACGTcount: A:0.18, C:0.26, G:0.16, T:0.40
Consensus pattern (22 bp):
AACCCTTATGGGTTTTCCATTC
Found at i:12024412 original size:13 final size:13
Alignment explanation
Indices: 12024389--12024421 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
12024379 CATATATTTA
12024389 TTCTCTTTTTTCCT
1 TTCT-TTTTTTCCT
12024403 TTCTTTTTTTCCT
1 TTCTTTTTTTCCT
12024416 TT-TTTT
1 TTCTTTT
12024422 CTTTATTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 4 0.21
13 11 0.58
14 4 0.21
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTCTTTTTTTCCT
Found at i:12024417 original size:21 final size:21
Alignment explanation
Indices: 12024393--12024432 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
12024383 TATTTATTCT
*
12024393 CTTTTTTCCTTTCTTTTTTTC
1 CTTTTTTCCTTTATTTTTTTC
*
12024414 CTTTTTTTCTTTATTTTTT
1 CTTTTTTCCTTTATTTTTT
12024433 AATGGAAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.80
Consensus pattern (21 bp):
CTTTTTTCCTTTATTTTTTTC
Found at i:12026605 original size:37 final size:37
Alignment explanation
Indices: 12026523--12026691 Score: 180
Period size: 37 Copynumber: 4.6 Consensus size: 37
12026513 CTCCCTATTT
* * * *
12026523 TGGCATGTTTTCGGTTGGACTAGCTTTTATGAGCATC
1 TGGCGTGTTATCGGTTGGATTAGCTCTTATGAGCATC
* * *
12026560 TGGCGTGTTATCGGGTGGATTAACTCTTATGAGCATT
1 TGGCGTGTTATCGGTTGGATTAGCTCTTATGAGCATC
* * *
12026597 TGGTGTGTTATTGGATGGATTAGCTCTTATGAGCATC
1 TGGCGTGTTATCGGTTGGATTAGCTCTTATGAGCATC
* * * * *
12026634 TAGAGTGTTATTGGTTGTATTAGCTCTTATGAGAGAT-
1 TGGCGTGTTATCGGTTGGATTAGCTCTTATGAG-CATC
12026671 TGGCGTGTT-TCGGTTGGATTA
1 TGGCGTGTTATCGGTTGGATTA
12026692 TCTATGTACT
Statistics
Matches: 110, Mismatches: 21, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
36 10 0.09
37 98 0.89
38 2 0.02
ACGTcount: A:0.18, C:0.11, G:0.30, T:0.41
Consensus pattern (37 bp):
TGGCGTGTTATCGGTTGGATTAGCTCTTATGAGCATC
Found at i:12034736 original size:54 final size:53
Alignment explanation
Indices: 12034677--12034809 Score: 153
Period size: 53 Copynumber: 2.5 Consensus size: 53
12034667 AACACTCCAG
* * *
12034677 TAAATGGAAAGCCTTTATGGCATAATGAGAAAGAAAAGCTTCTATGGCGGTTCT
1 TAAATGGAAAGCCTTTGTGGCATAATGAGAAA-AAAAACTTCTATGGCGATTCT
* * * *
12034731 TAAAT-GAAATGACTTTGTGGCATAATGGGAAAAAAAACTTCTGTGGTGATTCT
1 TAAATGGAAA-GCCTTTGTGGCATAATGAGAAAAAAAACTTCTATGGCGATTCT
*
12034784 TGAATGGACAA-CCTTTGTGGCATAAT
1 TAAATGGA-AAGCCTTTGTGGCATAAT
12034810 ATGAAGGAAA
Statistics
Matches: 67, Mismatches: 9, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
53 39 0.58
54 26 0.39
55 2 0.03
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (53 bp):
TAAATGGAAAGCCTTTGTGGCATAATGAGAAAAAAAACTTCTATGGCGATTCT
Found at i:12034839 original size:26 final size:26
Alignment explanation
Indices: 12034795--12034899 Score: 97
Period size: 26 Copynumber: 4.0 Consensus size: 26
12034785 GAATGGACAA
* *
12034795 CCTTTGTGGCATAATATGAAGGAAAG
1 CCTTTGTGGCGTAACATGAAGGAAAG
*
12034821 CCTTTGTAGCGTAACATGAAGGAAAAG
1 CCTTTGTGGCGTAACATGAAGG-AAAG
*
12034848 CC-TTGTGGCGTATCATGAAGTGAAAG
1 CCTTTGTGGCGTAACATGAAG-GAAAG
* * *
12034874 ACCCTTATGGCG-AAGCATGAAAGAAA
1 -CCTTTGTGGCGTAA-CATGAAGGAAA
12034900 AACCTCTATG
Statistics
Matches: 66, Mismatches: 8, Indels: 9
0.80 0.10 0.11
Matches are distributed among these distances:
26 39 0.59
27 14 0.21
28 13 0.20
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (26 bp):
CCTTTGTGGCGTAACATGAAGGAAAG
Found at i:12034892 original size:28 final size:26
Alignment explanation
Indices: 12034835--12034914 Score: 79
Period size: 27 Copynumber: 3.0 Consensus size: 26
12034825 TGTAGCGTAA
* * * *
12034835 CATGAAGGAAAAGCCTTGTGGCGTAT
1 CATGAAGGAAAACCCTTATGGCGAAG
12034861 CATGAAGTGAAAGACCCTTATGGCGAAG
1 CATGAAG-GAAA-ACCCTTATGGCGAAG
* *
12034889 CATGAAAGAAAAACCTCTATGGCGAA
1 CATGAAGGAAAACCCT-TATGGCGAA
12034915 CTCTGAAGAA
Statistics
Matches: 45, Mismatches: 6, Indels: 5
0.80 0.11 0.09
Matches are distributed among these distances:
26 11 0.24
27 17 0.38
28 17 0.38
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.19
Consensus pattern (26 bp):
CATGAAGGAAAACCCTTATGGCGAAG
Found at i:12037573 original size:45 final size:44
Alignment explanation
Indices: 12037477--12037587 Score: 109
Period size: 45 Copynumber: 2.5 Consensus size: 44
12037467 AATTAAAATA
* * **
12037477 AAGGTTGTTGCTATGTGCTGATTTCATCGGATACCAATGGTTAT
1 AAGGTGGTTGCTATGTGCTGATTTCACCGGATACCAATGACTAT
* *
12037521 ATAGGTGGTTGCTATGTGCTGATTTCACC-GAGTACTATTGACTAT
1 A-AGGTGGTTGCTATGTGCTGATTTCACCGGA-TACCAATGACTAT
* *
12037566 AAGGGTGG-TGTTGTGTGCTGAT
1 AA-GGTGGTTGCTATGTGCTGAT
12037588 CCACCGTGTA
Statistics
Matches: 56, Mismatches: 8, Indels: 6
0.80 0.11 0.09
Matches are distributed among these distances:
44 16 0.29
45 40 0.71
ACGTcount: A:0.21, C:0.13, G:0.29, T:0.38
Consensus pattern (44 bp):
AAGGTGGTTGCTATGTGCTGATTTCACCGGATACCAATGACTAT
Found at i:12059553 original size:27 final size:26
Alignment explanation
Indices: 12059491--12059555 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
12059481 TCCTTTATTT
** *
12059491 AGATTGCCACAAAGGCTTTCTTTACG
1 AGATTGCCACAAAGGCTCCCATTACG
* *
12059517 TGGTTAGCCACAAAGGCTCCCATTACAG
1 AGATT-GCCACAAAGGCTCCCATTAC-G
12059545 AGATTGCCACA
1 AGATTGCCACA
12059556 TGGGCTTTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
26 3 0.10
27 23 0.77
28 4 0.13
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.25
Consensus pattern (26 bp):
AGATTGCCACAAAGGCTCCCATTACG
Found at i:12059628 original size:28 final size:28
Alignment explanation
Indices: 12059576--12059761 Score: 123
Period size: 28 Copynumber: 6.6 Consensus size: 28
12059566 TTCCTAATAC
* *
12059576 GCCACAAAGACTTTCATCTTC-GAAGGTT
1 GCCACAAAGGCTTTCCT-TTCAGAAGGTT
* *
12059604 GCCACAAAGGCTCTCCTTTCAGAAGTTT
1 GCCACAAAGGCTTTCCTTTCAGAAGGTT
* *
12059632 GCCATAAGGGCTTTCCTTTCA-AAGGTT
1 GCCACAAAGGCTTTCCTTTCAGAAGGTT
* * **
12059659 -CATCACAAAAGCTTTCATTTTTGGAA-GTT
1 GC--CACAAAGGCTTTC-CTTTCAGAAGGTT
12059688 CGCCACAAAGGCTTTCC-TTCTAG-AGGTT
1 -GCCACAAAGGCTTTCCTTTC-AGAAGGTT
* * * *
12059716 CGCCAAAAAGGCTTTCCTTTTAGAGGGTC
1 -GCCACAAAGGCTTTCCTTTCAGAAGGTT
* *
12059745 ACCAAAAAGGCTTTCCT
1 GCCACAAAGGCTTTCCT
12059762 ATTCTGTTAG
Statistics
Matches: 124, Mismatches: 23, Indels: 22
0.73 0.14 0.13
Matches are distributed among these distances:
26 1 0.01
27 11 0.09
28 86 0.69
29 23 0.19
30 2 0.02
31 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (28 bp):
GCCACAAAGGCTTTCCTTTCAGAAGGTT
Found at i:12059730 original size:57 final size:57
Alignment explanation
Indices: 12059625--12059736 Score: 129
Period size: 57 Copynumber: 2.0 Consensus size: 57
12059615 TCTCCTTTCA
* * * *
12059625 GAAGTTTGCCATAAGGGCTTTCCTTTCAAAGGTTCATCACAAAAGCTTTCATTTTTG
1 GAAGTTCGCCACAAAGGCTTTCCTTTCAAAGGTTCACCACAAAAGCTTTCATTTTTG
* * *
12059682 GAAGTTCGCCACAAAGGCTTTCC-TTCTAGAGGTTCGCCA-AAAAGGCTTTCCTTTT
1 GAAGTTCGCCACAAAGGCTTTCCTTTC-AAAGGTTCACCACAAAA-GCTTTCATTTT
12059737 AGAGGGTCAC
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
56 7 0.15
57 39 0.85
ACGTcount: A:0.25, C:0.22, G:0.19, T:0.34
Consensus pattern (57 bp):
GAAGTTCGCCACAAAGGCTTTCCTTTCAAAGGTTCACCACAAAAGCTTTCATTTTTG
Found at i:12059758 original size:85 final size:85
Alignment explanation
Indices: 12059604--12059759 Score: 199
Period size: 85 Copynumber: 1.8 Consensus size: 85
12059594 TTCGAAGGTT
* * * * *
12059604 GCCACAAAGGCTCTCCTTTCAGAAGTTTGCCATAAGGGCTTTCCTTTCAAAGGTTCATCACAAAA
1 GCCACAAAGGCTCTCCTTTCAGAAGTTCGCCAAAAAGGCTTTCCTTTCAAAGGGTCACCACAAAA
12059669 GCTTTCATTTTTGGAAGTTC
66 GCTTTCATTTTTGGAAGTTC
* * * *
12059689 GCCACAAAGGCTTTCC-TTCTAGAGGTTCGCCAAAAAGGCTTTCCTTTTAGAGGGTCACCA-AAA
1 GCCACAAAGGCTCTCCTTTC-AGAAGTTCGCCAAAAAGGCTTTCCTTTCAAAGGGTCACCACAAA
12059752 AGGCTTTC
65 A-GCTTTC
12059760 CTATTCTGTT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
84 7 0.12
85 53 0.88
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.30
Consensus pattern (85 bp):
GCCACAAAGGCTCTCCTTTCAGAAGTTCGCCAAAAAGGCTTTCCTTTCAAAGGGTCACCACAAAA
GCTTTCATTTTTGGAAGTTC
Found at i:12085561 original size:18 final size:17
Alignment explanation
Indices: 12085525--12085563 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
12085515 ATTCTCATTT
* *
12085525 TTAATTTTTTATAATAA
1 TTAATATTTTATAAAAA
12085542 TTAATATTTTATAAAAAA
1 TTAATATTTTAT-AAAAA
12085560 TTAA
1 TTAA
12085564 ATTATATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (17 bp):
TTAATATTTTATAAAAA
Found at i:12094447 original size:20 final size:20
Alignment explanation
Indices: 12094422--12094461 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
12094412 AGTGAAACTA
12094422 AGGTATCTATGCTATTTGTC
1 AGGTATCTATGCTATTTGTC
12094442 AGGTATCTATGCTATTTGTC
1 AGGTATCTATGCTATTTGTC
12094462 CCAACAATGT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.15, G:0.20, T:0.45
Consensus pattern (20 bp):
AGGTATCTATGCTATTTGTC
Found at i:12102813 original size:51 final size:50
Alignment explanation
Indices: 12102718--12102831 Score: 115
Period size: 51 Copynumber: 2.2 Consensus size: 50
12102708 TTATAAAACT
** *
12102718 TATATATATAAAATACATAATGCATTTATGAAAACAAGGAAAATATA-AATA
1 TATA-ATATAAAATACATAATGCATTTACAAAAAAAAGGAAAATATATAA-A
* * * *
12102769 TATACATATAAAATATATTCATGCATTTACAAAAAAAATG-AAATATATAAG
1 TATA-ATATAAAATACA-TAATGCATTTACAAAAAAAAGGAAAATATATAAA
12102820 TATAATATAAAA
1 TATAATATAAAA
12102832 CGTGGAAAAT
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
50 8 0.15
51 26 0.49
52 19 0.36
ACGTcount: A:0.57, C:0.06, G:0.06, T:0.31
Consensus pattern (50 bp):
TATAATATAAAATACATAATGCATTTACAAAAAAAAGGAAAATATATAAA
Found at i:12103371 original size:20 final size:22
Alignment explanation
Indices: 12103332--12103372 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 22
12103322 CTTTTTTTAA
*
12103332 AATCGTAAATAAGTAAAAAAAT
1 AATCGTAAATAAGAAAAAAAAT
12103354 AATCG-AAA-AAGAAAAAAAA
1 AATCGTAAATAAGAAAAAAAA
12103373 ACAGTAAGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 10 0.56
21 3 0.17
22 5 0.28
ACGTcount: A:0.71, C:0.05, G:0.10, T:0.15
Consensus pattern (22 bp):
AATCGTAAATAAGAAAAAAAAT
Found at i:12103597 original size:21 final size:21
Alignment explanation
Indices: 12103571--12103627 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
12103561 AATCATATCT
*
12103571 TCTAAGAGTGTATATATCATA
1 TCTAAGATTGTATATATCATA
**
12103592 TCTAAGATTACATATATCATA
1 TCTAAGATTGTATATATCATA
12103613 TCTAAGATTGTATAT
1 TCTAAGATTGTATAT
12103628 CCTCGAAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.40
Consensus pattern (21 bp):
TCTAAGATTGTATATATCATA
Found at i:12106256 original size:14 final size:15
Alignment explanation
Indices: 12106239--12106267 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
12106229 AAATGTATCG
12106239 TTTGAAAT-TAAATA
1 TTTGAAATGTAAATA
12106253 TTTGAAATGTAAATA
1 TTTGAAATGTAAATA
12106268 ATAAAGTGTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.41
Consensus pattern (15 bp):
TTTGAAATGTAAATA
Found at i:12111915 original size:125 final size:126
Alignment explanation
Indices: 12111598--12112116 Score: 684
Period size: 125 Copynumber: 4.1 Consensus size: 126
12111588 GGCCAAACAT
* * * **
12111598 GAACTACTATAGAAAAATAGCGTCGACATGGGAGCTTTTTTCA-TCAATTTTACTGACAGTGCAT
1 GAACTACTATAGAAAAAGAGCATCCATGTGGGAGCTTTTTTCAGT-AATTTTACTGACAGTGCAT
* * * * *
12111662 CCTGCTTGAAGCGTTTTTGACACTATTTTTTCAGAAACATCTTCTCAAATTTATTTTTTTAG
65 CCTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAAACATATTCTCAAAATTATTTTTTCAG
* * * * *
12111724 GAACTACTATAGAAAAAGAACATCCATGTGGGAGTTTTTTTCAGTAATTTTGCTGATAGTGAATC
1 GAACTACTATAGAAAAAGAGCATCCATGTGGGAGCTTTTTTCAGTAATTTTACTGACAGTGCATC
* * * * * *
12111789 CTGCTTGAAGCGTTTTTAATACTATTTGCTCAGAAACATCTTTTC-AAATTATTTTTTCAA
66 CTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAAACATATTCTCAAAATTATTTTTTCAG
** * *
12111849 GAACTACTATAGAAAAAGAGCATTTATGTGGGAGCTTTTTTCAGTAATTTTGCCGACAGTGCATC
1 GAACTACTATAGAAAAAGAGCATCCATGTGGGAGCTTTTTTCAGTAATTTTACTGACAGTGCATC
*
12111914 CTGCTTGAAGC-TTTTTCACACTATTTGTTCAGAATCATATTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAAACATATTCTCAAAATTATTTTTTCAG
* * * * *
12111974 GAACTATTGTAGAAAAAGAGCGTCCATGTGGGAGCTTTTCTCAGTATTTTTACTGACAGTGCATC
1 GAACTACTATAGAAAAAGAGCATCCATGTGGGAGCTTTTTTCAGTAATTTTACTGACAGTGCATC
* * *
12112039 CTGATTGAAGCGTTTTTCACACTATTTGTTCAGAATCGTATTCTCAAAATTATTTTTTCAG
66 CTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAAACATATTCTCAAAATTATTTTTTCAG
* *
12112100 GAATTACTGTAGAAAAA
1 GAACTACTATAGAAAAA
12112117 AAACAAAATC
Statistics
Matches: 345, Mismatches: 45, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
124 27 0.08
125 161 0.47
126 156 0.45
127 1 0.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.38
Consensus pattern (126 bp):
GAACTACTATAGAAAAAGAGCATCCATGTGGGAGCTTTTTTCAGTAATTTTACTGACAGTGCATC
CTGCTTGAAGCGTTTTTCACACTATTTGTTCAGAAACATATTCTCAAAATTATTTTTTCAG
Found at i:12112226 original size:34 final size:33
Alignment explanation
Indices: 12112177--12112292 Score: 117
Period size: 41 Copynumber: 3.3 Consensus size: 33
12112167 CACAATATTA
12112177 TTTTAAAAA-ACTAAACCTTAATTTAATTAATT
1 TTTTAAAAACACTAAACCTTAATTTAATTAATT
12112209 TTCTTAAAAACACTAAACACTAAACCCTAATTTAATTAATT
1 TT-TTAAAAACACTAAAC-CT------TAATTTAATTAATT
* *
12112250 TATTTAAAACCACAAAACCTTAATTTAATTAATT
1 T-TTTAAAAACACTAAACCTTAATTTAATTAATT
*
12112284 TTTAAAAAA
1 TTTTAAAAA
12112293 GAACACTAAA
Statistics
Matches: 70, Mismatches: 4, Indels: 19
0.75 0.04 0.20
Matches are distributed among these distances:
32 2 0.03
33 13 0.19
34 22 0.31
35 2 0.03
40 2 0.03
41 28 0.40
42 1 0.01
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (33 bp):
TTTTAAAAACACTAAACCTTAATTTAATTAATT
Found at i:12112243 original size:41 final size:41
Alignment explanation
Indices: 12112181--12112267 Score: 122
Period size: 41 Copynumber: 2.1 Consensus size: 41
12112171 ATATTATTTT
* *
12112181 AAAAAACTAAACCTTAATTTAATTAATTT-TCTTAAAAACAC
1 AAAACACTAAACCCTAATTTAATTAATTTAT-TTAAAAACAC
* *
12112222 TAAACACTAAACCCTAATTTAATTAATTTATTTAAAACCAC
1 AAAACACTAAACCCTAATTTAATTAATTTATTTAAAAACAC
12112263 AAAAC
1 AAAAC
12112268 CTTAATTTAA
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
41 39 0.98
42 1 0.03
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (41 bp):
AAAACACTAAACCCTAATTTAATTAATTTATTTAAAAACAC
Found at i:12112953 original size:115 final size:110
Alignment explanation
Indices: 12112719--12112965 Score: 334
Period size: 110 Copynumber: 2.2 Consensus size: 110
12112709 TAGTCAGTTC
* *
12112719 ACTTATTATTTATTTGATTTTGCGATTTTAGAAGGAGAGAAGGCAACAATAAATTTTATTTTAAA
1 ACTTATTATTTGTTTGATTTTGCGATTTTAGAAGGAGAGAAGGCAACAACAAATTTTATTTTAAA
* *
12112784 GGTAATTTTTTGTAATTGTTATTTATTTGTTTAGGGTTTTGTGGT
66 GGTAATTTTTTATAATTATTATTTATTTGTTTAGGGTTTTGTGGT
* * * * *
12112829 ACTTATTATTTGTTTAATTTTGTGATTTTGGAAGGAGAGGAGGCAACAACAAATTTTGTTTTAAA
1 ACTTATTATTTGTTTGATTTTGCGATTTTAGAAGGAGAGAAGGCAACAACAAATTTTATTTTAAA
12112894 GGTAATTTTTTTATTTATAATTATTATTTATTTGTTTAGGGTTTTG-GGTT
66 GGTAA----TTT-TTTATAATTATTATTTATTTGTTTAGGGTTTTGTGG-T
**
12112944 TGTTATTATTTGTTTGATTTTG
1 ACTTATTATTTGTTTGATTTTG
12112966 ACTTTTTTAC
Statistics
Matches: 119, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
110 63 0.53
114 5 0.04
115 51 0.43
ACGTcount: A:0.26, C:0.03, G:0.19, T:0.51
Consensus pattern (110 bp):
ACTTATTATTTGTTTGATTTTGCGATTTTAGAAGGAGAGAAGGCAACAACAAATTTTATTTTAAA
GGTAATTTTTTATAATTATTATTTATTTGTTTAGGGTTTTGTGGT
Found at i:12116674 original size:25 final size:25
Alignment explanation
Indices: 12116550--12116726 Score: 86
Period size: 25 Copynumber: 7.2 Consensus size: 25
12116540 AAAATCTTCC
* *
12116550 GAGCCATATAAT-GAGAAGCTCATAT
1 GAGCCAT-TAATCGGGAAGCTCATAA
*
12116575 GAGCCATGTAA-CGGGAAGCTAATAA
1 GAGCCAT-TAATCGGGAAGCTCATAA
* ** *
12116600 GAGCCA-TATTCGATAAGCTCATGCA
1 GAGCCATTAATCGGGAAGCTCAT-AA
* ** * *
12116625 -AGCCAAT-ATCAAGTAGCTTC-CAA
1 GAGCCATTAATCGGGAAGC-TCATAA
12116648 GAGCCATTAATCGGGAAGCTCATAA
1 GAGCCATTAATCGGGAAGCTCATAA
*
12116673 GAGCCAATT-ATCGGGAAGCTCCA-GA
1 GAGCC-ATTAATCGGGAAGCT-CATAA
*
12116698 GAGCCAATT-ATCGGGACA-CTCAAAA
1 GAGCC-ATTAATCGGGA-AGCTCATAA
12116723 GAGC
1 GAGC
12116727 TGTGGTGTAT
Statistics
Matches: 118, Mismatches: 22, Indels: 24
0.72 0.13 0.15
Matches are distributed among these distances:
23 3 0.03
24 30 0.25
25 79 0.67
26 6 0.05
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (25 bp):
GAGCCATTAATCGGGAAGCTCATAA
Found at i:12116855 original size:24 final size:24
Alignment explanation
Indices: 12116769--12116857 Score: 83
Period size: 24 Copynumber: 3.7 Consensus size: 24
12116759 ACCAAATCGT
* *
12116769 GATGCTCATAAGAGCTATTAACGG
1 GATGCTCATGAGAGCTAATAACGG
* *
12116793 GAAGCTCAAT-AGAGAC-AATATCGG
1 GATGCTC-ATGAGAG-CTAATAACGG
*
12116817 GTTGCTCATGAGAGCTAATAACGG
1 GATGCTCATGAGAGCTAATAACGG
* *
12116841 GATGCTCTTGGGAGCTA
1 GATGCTCATGAGAGCTA
12116858 TGGTGTGTCC
Statistics
Matches: 52, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
23 3 0.06
24 46 0.88
25 3 0.06
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (24 bp):
GATGCTCATGAGAGCTAATAACGG
Found at i:12124354 original size:25 final size:25
Alignment explanation
Indices: 12124326--12124403 Score: 70
Period size: 25 Copynumber: 3.2 Consensus size: 25
12124316 AAGCTCTTCC
*
12124326 GAGCCATATAACGGAAAGCTCATGT
1 GAGCCATATAACGGAAAGCTCATGA
* * *
12124351 GAGCCATGTAAC-TAGAAGCTCATAA
1 GAGCCATATAACGGA-AAGCTCATGA
* * *
12124376 GAGCCATAT-TCGGGAAGCTCATGC
1 GAGCCATATAACGGAAAGCTCATGA
12124400 GAGC
1 GAGC
12124404 TAATATCGGG
Statistics
Matches: 41, Mismatches: 10, Indels: 5
0.73 0.18 0.09
Matches are distributed among these distances:
24 14 0.34
25 27 0.66
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACGGAAAGCTCATGA
Found at i:12124397 original size:24 final size:24
Alignment explanation
Indices: 12124365--12124477 Score: 84
Period size: 25 Copynumber: 4.6 Consensus size: 24
12124355 CATGTAACTA
12124365 GAAGCTCATAAGAGCC-ATATTCGG
1 GAAGCTCATAAGAGCCAATA-TCGG
** *
12124389 GAAGCTCATGCGAGCTAATATCGG
1 GAAGCTCATAAGAGCCAATATCGG
** *** * *
12124413 GTGGCTCCGGAGAGCCATTAATCGA
1 GAAGCTCATAAGAGCCAAT-ATCGG
*
12124438 GAAGCTCATAAGAGCCAATTATCCG
1 GAAGCTCATAAGAGCCAA-TATCGG
*
12124463 GACGCTCATAAGAGC
1 GAAGCTCATAAGAGC
12124478 TGTGGTGTAT
Statistics
Matches: 66, Mismatches: 20, Indels: 5
0.73 0.22 0.05
Matches are distributed among these distances:
24 29 0.44
25 36 0.55
26 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.27, T:0.19
Consensus pattern (24 bp):
GAAGCTCATAAGAGCCAATATCGG
Found at i:12124599 original size:24 final size:24
Alignment explanation
Indices: 12124515--12124657 Score: 103
Period size: 24 Copynumber: 5.9 Consensus size: 24
12124505 TCACAACAAA
** *
12124515 ATCGGGATGCTCATTCGAGCTAGT
1 ATCGGGATGCTCATGAGAGCTAAT
* * *
12124539 AAT-GGGAAGCTCGTGAGAGCCATAT
1 -ATCGGGATGCTCATGAGAGCTA-AT
* * *
12124564 ATCGAG-TAGCTCAGGAGAGCAAAT
1 ATCGGGAT-GCTCATGAGAGCTAAT
12124588 ATCGGGATGCTCATGAGAGCTAAT
1 ATCGGGATGCTCATGAGAGCTAAT
*
12124612 AAT-GGGATGCTTATGAGAGCTAAT
1 -ATCGGGATGCTCATGAGAGCTAAT
* * * *
12124636 AACAGGATGCTCTTGCGAGCTA
1 ATCGGGATGCTCATGAGAGCTA
12124658 TGGTGTGTTT
Statistics
Matches: 92, Mismatches: 20, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
23 1 0.01
24 72 0.78
25 19 0.21
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (24 bp):
ATCGGGATGCTCATGAGAGCTAAT
Found at i:12134288 original size:26 final size:26
Alignment explanation
Indices: 12134229--12134288 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
12134219 TTTTCTTTTC
** *
12134229 TTTTTCTTTTCATTTTTAGTTTAGGT
1 TTTTTCTTTTCATTTTTAGAGTAGAT
*
12134255 TTTCTCTTTTC-TTTTTAGAGTAGAT
1 TTTTTCTTTTCATTTTTAGAGTAGAT
12134280 TTTATTCTT
1 TTT-TTCTT
12134289 GTAGTTTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
25 14 0.50
26 14 0.50
ACGTcount: A:0.13, C:0.10, G:0.10, T:0.67
Consensus pattern (26 bp):
TTTTTCTTTTCATTTTTAGAGTAGAT
Found at i:12149227 original size:12 final size:12
Alignment explanation
Indices: 12149210--12149251 Score: 75
Period size: 12 Copynumber: 3.5 Consensus size: 12
12149200 TCAGTGAGTT
*
12149210 ACACGGCCTGGC
1 ACACGGCCTGTC
12149222 ACACGGCCTGTC
1 ACACGGCCTGTC
12149234 ACACGGCCTGTC
1 ACACGGCCTGTC
12149246 ACACGG
1 ACACGG
12149252 ACATGTAGGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
12 29 1.00
ACGTcount: A:0.19, C:0.40, G:0.29, T:0.12
Consensus pattern (12 bp):
ACACGGCCTGTC
Found at i:12152120 original size:25 final size:24
Alignment explanation
Indices: 12151991--12152120 Score: 77
Period size: 26 Copynumber: 5.2 Consensus size: 24
12151981 TAAATCTTAT
* *
12151991 GAGCATCCCGATATATGACTCTTCG
1 GAGCTTCCCGATA-ATGGCTCTTCG
* *
12152016 TGAGCTTCCCGTTAATTGGCTCTTTG
1 -GAGCTTCCCGATAA-TGGCTCTTCG
*
12152042 TGAGCTTCTCGAT-ATGGCTTGCTT--
1 -GAGCTTCCCGATAATGGC-T-CTTCG
* * * *
12152066 GAACTTCCTGATATATGGCTATCCG
1 GAGCTTCCCGATA-ATGGCTCTTCG
*
12152091 AAGCTTCCCGATTAATGGCTCTTCG
1 GAGCTTCCCGA-TAATGGCTCTTCG
12152116 GAGCT
1 GAGCT
12152121 ACCTGTTATA
Statistics
Matches: 79, Mismatches: 17, Indels: 17
0.70 0.15 0.15
Matches are distributed among these distances:
23 10 0.13
24 5 0.06
25 29 0.37
26 35 0.44
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (24 bp):
GAGCTTCCCGATAATGGCTCTTCG
Found at i:12154728 original size:31 final size:31
Alignment explanation
Indices: 12154690--12154748 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
12154680 GTTACTGAAC
12154690 TATTCGAAAGTGTTCATTTAAGTCACTAAAT
1 TATTCGAAAGTGTTCATTTAAGTCACTAAAT
* * *
12154721 TATTCGAAAGTTTTTATTTAAGTTACTA
1 TATTCGAAAGTGTTCATTTAAGTCACTA
12154749 GGCTGTTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.34, C:0.10, G:0.12, T:0.44
Consensus pattern (31 bp):
TATTCGAAAGTGTTCATTTAAGTCACTAAAT
Found at i:12154986 original size:12 final size:12
Alignment explanation
Indices: 12154971--12155006 Score: 72
Period size: 12 Copynumber: 3.0 Consensus size: 12
12154961 AATGAATTGT
12154971 AAAAGAGAAAGA
1 AAAAGAGAAAGA
12154983 AAAAGAGAAAGA
1 AAAAGAGAAAGA
12154995 AAAAGAGAAAGA
1 AAAAGAGAAAGA
12155007 GAACTTTCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.25, T:0.00
Consensus pattern (12 bp):
AAAAGAGAAAGA
Found at i:12155007 original size:6 final size:6
Alignment explanation
Indices: 12154972--12155009 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
12154962 ATGAATTGTA
* *
12154972 AAAGAG AAAGAA AAAGAG AAAGAA AAAGAG AAAGAG AA
1 AAAGAG AAAGAG AAAGAG AAAGAG AAAGAG AAAGAG AA
12155010 CTTTCGATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (6 bp):
AAAGAG
Found at i:12156963 original size:113 final size:113
Alignment explanation
Indices: 12156775--12157083 Score: 478
Period size: 113 Copynumber: 2.7 Consensus size: 113
12156765 GCGTTTTCCA
* * *
12156775 AAAAGCGCCGC-AAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCTTCCGGGGGATTTAGTGGC
1 AAAAGCGCCGCAAAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCTTTC-AGGGATTTAGCGGC
12156839 GTTTTTAAGAAAGCGCCGCTAATG-CTCAGGGCTTTAGCGGCGTTTTTGG
65 GTTTTTAAGAAAGCGCCGCTAATGCCT-AGGGCTTTAGCGGCGTTTTTGG
* * * * *
12156888 GAAAGCGCCGCAAAAAAACTAAGCCCAACGGCGCCGTTTTCTAAGATTTCAGGGATTTAGCAGCG
1 AAAAGCGCCGCAAAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCG
* *
12156953 TTTTTAAGAAAACGCCGCTAATGCCTAGGGCTTTAGTGGCGTTTTTGG
66 TTTTTAAGAAAGCGCCGCTAATGCCTAGGGCTTTAGCGGCGTTTTTGG
*
12157001 AAAAGCGCCGCAAAAAAACTATGCCCAACGGTGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCG
1 AAAAGCGCCGCAAAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCG
*
12157066 TTTTTGAGAAAGCGCCGC
66 TTTTTAAGAAAGCGCCGC
12157084 AAAAAAATTA
Statistics
Matches: 176, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
113 140 0.80
114 36 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (113 bp):
AAAAGCGCCGCAAAAAAACTAAGCCCAACGGTGCCGTTTTCTGAGCTTTCAGGGATTTAGCGGCG
TTTTTAAGAAAGCGCCGCTAATGCCTAGGGCTTTAGCGGCGTTTTTGG
Found at i:12157101 original size:72 final size:72
Alignment explanation
Indices: 12156979--12157155 Score: 239
Period size: 72 Copynumber: 2.5 Consensus size: 72
12156969 GCTAATGCCT
* * * *
12156979 AGGGCTTTAGTGGCGTTTTTG-GAAAAGCGCCGCAAAAAAACTATGCCCAACGGTGCCGTTTTCT
1 AGGGATTTAGCGGCGTTTTTGAG-AAAGCGCCGCAAAAAAACTAAGCCCAACGGCGCCGTTTTCT
12157043 GAGCTTTC
65 GAGCTTTC
* *
12157051 AGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAATTAAGCCCAACGGCGTCGTTTTCTG
1 AGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACTAAGCCCAACGGCGCCGTTTTCTG
*
12157116 AGCTTTT
66 AGCTTTC
* * * *
12157123 GGGGATTTAGCGGCGCTTTTAAGAAAGCACCGC
1 AGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGC
12157156 TAATGCTCAA
Statistics
Matches: 93, Mismatches: 11, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
72 92 0.99
73 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (72 bp):
AGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACTAAGCCCAACGGCGCCGTTTTCTG
AGCTTTC
Found at i:12157102 original size:185 final size:186
Alignment explanation
Indices: 12156864--12157270 Score: 575
Period size: 185 Copynumber: 2.2 Consensus size: 186
12156854 CCGCTAATGC
* *
12156864 TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACTAAGCCCAACGGCGCCGTTTTC
1 TCAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACTAAGCCCAACGGCGCCGTTTTC
* * * *
12156929 TAAGATTTCAGGGATTTAGCAGCGTTTTTAAGAAAACGCCGCTAATGC-CTAGGGCTTTAGTGGC
66 TAAGATTTCAGGGATTTAGCAGCGCTTTTAAGAAAACACCGCTAATGCTC-AAGGCTTTAGCGGC
* * *
12156993 GTTTTTGGAAAAGCGCCGC-AAAAAAACTATGCCCAACGGTGCCGTTTTCTGAGCTT
130 GTTTTTGGAAAAGCGCCGCAAAAAAAACTAAGCCCAACGGCGCCGTTTTCTGAACTT
* *
12157049 TCAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAATTAAGCCCAACGGCGTCGTTTTC
1 TCAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACTAAGCCCAACGGCGCCGTTTTC
* * ** * * *
12157114 TGAGCTTTTGGGGATTTAGCGGCGCTTTTAAGAAAGCACCGCTAATGCTCAAGGCTTTAGCGGTG
66 TAAGATTTCAGGGATTTAGCAGCGCTTTTAAGAAAACACCGCTAATGCTCAAGGCTTTAGCGGCG
* *
12157179 TTTTTGGGAAAGCGCCGCAAAAAAAAATTAAGCCCAACGGCGCCGTTTTCTGAACTT
131 TTTTTGGAAAAGCGCCGC-AAAAAAAACTAAGCCCAACGGCGCCGTTTTCTGAACTT
* * *
12157236 TCGGGGATTTAGCGGCGTTTTTAAGAGAGCGCCGC
1 TCAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGC
12157271 TAATGCTTAG
Statistics
Matches: 196, Mismatches: 23, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
185 130 0.66
186 1 0.01
187 65 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (186 bp):
TCAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAAACTAAGCCCAACGGCGCCGTTTTC
TAAGATTTCAGGGATTTAGCAGCGCTTTTAAGAAAACACCGCTAATGCTCAAGGCTTTAGCGGCG
TTTTTGGAAAAGCGCCGCAAAAAAAACTAAGCCCAACGGCGCCGTTTTCTGAACTT
Found at i:12157375 original size:114 final size:113
Alignment explanation
Indices: 12157049--12157392 Score: 519
Period size: 115 Copynumber: 3.0 Consensus size: 113
12157039 TTCTGAGCTT
* * * *
12157049 TCAGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGC-AAAAAAATTAAGCCCAACGGCGTCGTTTT
1 TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAAATAAGCCCAACGGCGCCGTTTT
* *
12157113 CTGAGCTTTTGGGGATTTAGCGGCGCTTTTAAGAAAGCACCGCTAATGC
66 CTGAGCTTTCGGGGATTTAGCGGCG-TTTTAAGAAAGCGCCGCTAATGC
* *
12157162 TCAAGGCTTTAGCGGTGTTTTTGGGAAAGCGCCGCAAAAAAAAATTAAGCCCAACGGCGCCGTTT
1 TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAAA-TAAGCCCAACGGCGCCGTTT
* *
12157227 TCTGAACTTTCGGGGATTTAGCGGCGTTTTTAAGAGAGCGCCGCTAATGC
65 TCTGAGCTTTCGGGGATTTAGCGGCG-TTTTAAGAAAGCGCCGCTAATGC
* *
12157277 TTAGGGCTTTAACGGCGTTTTTGGGAAAGCGCCGCAAAAAAAAATAAGCCCAACGGCGCCGTTTT
1 TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAAATAAGCCCAACGGCGCCGTTTT
* *
12157342 CTGAGCTTTCGGGGATTTATCAGCGTTTGTAAGAAAGCGCCGCTAATGC
66 CTGAGCTTTCGGGGATTTAGCGGCGTTT-TAAGAAAGCGCCGCTAATGC
12157391 TC
1 TC
12157393 GAGGATTTAA
Statistics
Matches: 208, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
113 34 0.16
114 70 0.34
115 104 0.50
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (113 bp):
TCAGGGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAAAATAAGCCCAACGGCGCCGTTTT
CTGAGCTTTCGGGGATTTAGCGGCGTTTTAAGAAAGCGCCGCTAATGC
Found at i:12157705 original size:21 final size:22
Alignment explanation
Indices: 12157668--12157719 Score: 79
Period size: 21 Copynumber: 2.4 Consensus size: 22
12157658 GTGCTATGCT
12157668 TTAAGGGTTAGGGGATTTAGGG
1 TTAAGGGTTAGGGGATTTAGGG
*
12157690 TTAAGGGTTA-GGGATTTGGGG
1 TTAAGGGTTAGGGGATTTAGGG
*
12157711 TTTAGGGTT
1 TTAAGGGTT
12157720 TCAATAGTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
21 18 0.64
22 10 0.36
ACGTcount: A:0.19, C:0.00, G:0.44, T:0.37
Consensus pattern (22 bp):
TTAAGGGTTAGGGGATTTAGGG
Found at i:12161565 original size:190 final size:190
Alignment explanation
Indices: 12161239--12161591 Score: 501
Period size: 190 Copynumber: 1.9 Consensus size: 190
12161229 AATACGGGTT
* * * * *
12161239 TTGTTTAACTGTCTCAATTGCTTCTCGACAAAACCCAGTTTACAACATTTCTGACGTTATAAAAT
1 TTGTTTAACTGTCTCAATTGCTTCTCAACAAAACCCAGTTTACAACATATCCGAAGCTATAAAAT
* * * *
12161304 CTTGATTCCTTACTGATTCTGCTGAATTTGTGTTTATGGTTGTCGATATATGCTGTTTGTTGCTG
66 CTTGATTCCATAATGATTCTGCTGAATTTGTGTTTATGATTGTCGATATATGCTGTTTGTTGCTA
12161369 TATATTGC-TTGAGTTTTACAAAAGTCGAAGAGACATTTTTAAGAATGGGAATTCAGGTG
131 TATATTGCTTTGAGTTTTACAAAAGTCGAAGAGACATTTTTAAGAATGGGAATTCAGGTG
* * * ** *
12161428 TTGTTTAACTGTCTGAATTTCTTCTCAACAAAACCCCATTTTATGACATATCCGAAGCTATGAAA
1 TTGTTTAACTGTCTCAATTGCTTCTCAACAAAA-CCCAGTTTACAACATATCCGAAGCTATAAAA
* * *
12161493 TCTTGATTCCATAATGTTTCTGCTGGATTTGTGTTTATGATTGTTGATATATGCTGTTTGTTGCT
65 TCTTGATTCCATAATGATTCTGCTGAATTTGTGTTTATGATTGTCGATATATGCTGTTTGTTGCT
* *
12161558 ATATATTGCTTTTGAGTTTTTCAAGAGTCGAAGA
130 ATATATTGC-TTTGAGTTTTACAAAAGTCGAAGA
12161592 AAAATGACTT
Statistics
Matches: 141, Mismatches: 20, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
189 30 0.21
190 90 0.64
192 21 0.15
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (190 bp):
TTGTTTAACTGTCTCAATTGCTTCTCAACAAAACCCAGTTTACAACATATCCGAAGCTATAAAAT
CTTGATTCCATAATGATTCTGCTGAATTTGTGTTTATGATTGTCGATATATGCTGTTTGTTGCTA
TATATTGCTTTGAGTTTTACAAAAGTCGAAGAGACATTTTTAAGAATGGGAATTCAGGTG
Found at i:12163230 original size:43 final size:43
Alignment explanation
Indices: 12163173--12163308 Score: 202
Period size: 43 Copynumber: 3.2 Consensus size: 43
12163163 TCTTTATAAT
* *
12163173 GGCGTTTGTTGTAGAAGTGAT-GTTAAAGGTCTTGTTCTTTAAC
1 GGCGTTTGTGGTAGAAGTG-TCGTTAAAGGTCTTGTTCTTTAGC
* *
12163216 GGCGTTTGTGGTAGAAGTGTCGTTAAAGGTTTTATTCTTTAGC
1 GGCGTTTGTGGTAGAAGTGTCGTTAAAGGTCTTGTTCTTTAGC
* *
12163259 GGCATTTGTGGTAGAAGCGTCGTTAAAGGTCTTGTTCTTTAGC
1 GGCGTTTGTGGTAGAAGTGTCGTTAAAGGTCTTGTTCTTTAGC
12163302 GGCGTTT
1 GGCGTTT
12163309 ATTTTTAAAA
Statistics
Matches: 83, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
42 1 0.01
43 82 0.99
ACGTcount: A:0.18, C:0.11, G:0.30, T:0.40
Consensus pattern (43 bp):
GGCGTTTGTGGTAGAAGTGTCGTTAAAGGTCTTGTTCTTTAGC
Found at i:12164867 original size:18 final size:21
Alignment explanation
Indices: 12164827--12164872 Score: 62
Period size: 18 Copynumber: 2.3 Consensus size: 21
12164817 ATTATAAATT
12164827 TTTTTTATATATTCTTTAGAA
1 TTTTTTATATATTCTTTAGAA
*
12164848 TTTTTTAT-T-TT-TTTATAA
1 TTTTTTATATATTCTTTAGAA
12164866 TTTTTTA
1 TTTTTTA
12164873 AAATATAAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 13 0.54
19 2 0.08
20 1 0.04
21 8 0.33
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (21 bp):
TTTTTTATATATTCTTTAGAA
Found at i:12164872 original size:10 final size:10
Alignment explanation
Indices: 12164827--12164872 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
12164817 ATTATAAATT
12164827 TTTTTTATATA
1 TTTTTTATA-A
* *
12164838 TTCTTTAGAA
1 TTTTTTATAA
12164848 TTTTTTAT--
1 TTTTTTATAA
12164856 TTTTTTATAA
1 TTTTTTATAA
12164866 TTTTTTA
1 TTTTTTA
12164873 AAATATAAAG
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
8 8 0.28
10 14 0.48
11 7 0.24
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.72
Consensus pattern (10 bp):
TTTTTTATAA
Found at i:12164911 original size:19 final size:19
Alignment explanation
Indices: 12164887--12164932 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
12164877 ATAAAGTTTA
12164887 GAATTTTTAAAAATATTTT
1 GAATTTTTAAAAATATTTT
*
12164906 GAATTTTAAAAAATATTTT
1 GAATTTTTAAAAATATTTT
12164925 GAATTTTT
1 GAATTTTT
12164933 TTATTTTTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (19 bp):
GAATTTTTAAAAATATTTT
Found at i:12175781 original size:13 final size:13
Alignment explanation
Indices: 12175763--12175787 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12175753 CTTATAACTC
12175763 ATTTTCCTTAATG
1 ATTTTCCTTAATG
12175776 ATTTTCCTTAAT
1 ATTTTCCTTAAT
12175788 AACTTATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.04, T:0.56
Consensus pattern (13 bp):
ATTTTCCTTAATG
Found at i:12181278 original size:20 final size:20
Alignment explanation
Indices: 12181255--12181303 Score: 64
Period size: 20 Copynumber: 2.5 Consensus size: 20
12181245 AAGGCACTGG
12181255 AGTGCAAACAGAGACACCAA
1 AGTGCAAACAGAGACACCAA
* *
12181275 AGTGTGAAA-AGAGGCACCAA
1 AGTG-CAAACAGAGACACCAA
12181295 AGTGCAAAC
1 AGTGCAAAC
12181304 CCGTACAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
19 3 0.12
20 18 0.75
21 3 0.12
ACGTcount: A:0.47, C:0.20, G:0.24, T:0.08
Consensus pattern (20 bp):
AGTGCAAACAGAGACACCAA
Found at i:12202241 original size:46 final size:46
Alignment explanation
Indices: 12202171--12202264 Score: 170
Period size: 46 Copynumber: 2.0 Consensus size: 46
12202161 GGTTTAAAAT
12202171 ACCTCGACCCACTATCAAGAATGATAAGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAAGAATGATAAGAACCTTGGTATATGATGA
* *
12202217 ACCTCGACCCACTATCAAGGATGATAGGAACCTTGGTATATGATGA
1 ACCTCGACCCACTATCAAGAATGATAAGAACCTTGGTATATGATGA
12202263 AC
1 AC
12202265 GCCACACTAT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.35, C:0.22, G:0.19, T:0.23
Consensus pattern (46 bp):
ACCTCGACCCACTATCAAGAATGATAAGAACCTTGGTATATGATGA
Found at i:12211361 original size:13 final size:12
Alignment explanation
Indices: 12211340--12211372 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
12211330 CTGACCACAA
12211340 AAACC-AAAATT
1 AAACCAAAAATT
12211351 AAACTCAAAAATT
1 AAAC-CAAAAATT
12211364 AAACCAAAA
1 AAACCAAAA
12211373 CCAAAATATC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
11 4 0.20
12 6 0.30
13 10 0.50
ACGTcount: A:0.67, C:0.18, G:0.00, T:0.15
Consensus pattern (12 bp):
AAACCAAAAATT
Found at i:12219272 original size:20 final size:20
Alignment explanation
Indices: 12219249--12219297 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
12219239 CAATGTTTAT
*
12219249 ACAGAGGCACCGAA-GTGCAA
1 ACAGAGGCA-CAAATGTGCAA
*
12219269 ACAGAAGCACAAATGTGCAA
1 ACAGAGGCACAAATGTGCAA
*
12219289 TCAGAGGCA
1 ACAGAGGCA
12219298 TTAAAGTGCA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.43, C:0.22, G:0.27, T:0.08
Consensus pattern (20 bp):
ACAGAGGCACAAATGTGCAA
Found at i:12219306 original size:20 final size:19
Alignment explanation
Indices: 12219261--12219310 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
12219251 AGAGGCACCG
*
12219261 AAGTGCAAACAGAAGCACA
1 AAGTGCAATCAGAAGCACA
* *
12219280 AATGTGCAATCAGAGGCATTA
1 AA-GTGCAATCAGAAGCA-CA
12219301 AAGTGCAATC
1 AAGTGCAATC
12219311 TCGTACAAGC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 2 0.08
20 21 0.81
21 3 0.12
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (19 bp):
AAGTGCAATCAGAAGCACA
Found at i:12240923 original size:50 final size:50
Alignment explanation
Indices: 12240691--12240923 Score: 240
Period size: 50 Copynumber: 4.7 Consensus size: 50
12240681 ATACCAAAGA
* * * *
12240691 CATGTCCCAGACATGGTCTTACATGGGA--TGTTTTCT-GTACTGCCAATGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCG--GTGCCAACGC
* * ** * * * * *
12240740 CATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGATGTCC-ATGT
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGGTG-CCAACGC
** *
12240790 CATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGGTGCCAACGC
* *
12240840 AATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTTGGTGCCAACGC
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGGTGCCAACGC
*
12240890 CATGTCCCAGACATGGTCTTACATAGGACCTCTT
1 CATGTCCCAGACATGGTCTTACATGGGACCTCTT
12240924 TACCCAAATG
Statistics
Matches: 154, Mismatches: 25, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
49 28 0.18
50 119 0.77
51 6 0.04
52 1 0.01
ACGTcount: A:0.21, C:0.27, G:0.22, T:0.29
Consensus pattern (50 bp):
CATGTCCCAGACATGGTCTTACATGGGACCTCTTATCTCGGTGCCAACGC
Found at i:12241293 original size:30 final size:30
Alignment explanation
Indices: 12241259--12241316 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
12241249 CCTTGACTTG
12241259 AACTTTTGAAAAATTACAATTTTGCCCCTA
1 AACTTTTGAAAAATTACAATTTTGCCCCTA
* * * *
12241289 AACTTTTGCATAATTACAGTTTTTCCCC
1 AACTTTTGAAAAATTACAATTTTGCCCC
12241317 AAAGTTCGGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTTGAAAAATTACAATTTTGCCCCTA
Found at i:12245417 original size:43 final size:43
Alignment explanation
Indices: 12245233--12245419 Score: 207
Period size: 43 Copynumber: 4.4 Consensus size: 43
12245223 TTTTAGAAAT
*** * *
12245233 AAACGCCGCTAAAAGTAATGACCTTTAGCGGCGC-TTTCCCAC
1 AAACGCCGCTAAAAACCATGACCTTTAGCGACGCTTTTCGCAC
* * * * * *
12245275 AAACGCTGCTATAGATCATGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAAACCATGACCTTTAGCGACGCTTTTCGCAC
* * **
12245318 AAACGCCGCTAAAGACCATGACCTTTAGTGACATTTTTCGCAC
1 AAACGCCGCTAAAAACCATGACCTTTAGCGACGCTTTTCGCAC
12245361 AAACGCCGCTAAAAACCATGACCTTTAGCGACGCTTTTCGCGA-
1 AAACGCCGCTAAAAACCATGACCTTTAGCGACGCTTTTCGC-AC
*
12245404 AAACACCGCTAAAAAC
1 AAACGCCGCTAAAAAC
12245420 ATATCATACA
Statistics
Matches: 125, Mismatches: 18, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
42 29 0.23
43 95 0.76
44 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.17, T:0.22
Consensus pattern (43 bp):
AAACGCCGCTAAAAACCATGACCTTTAGCGACGCTTTTCGCAC
Found at i:12246763 original size:15 final size:17
Alignment explanation
Indices: 12246745--12246782 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 17
12246735 GGATAAGGAA
12246745 AAAAATTAT-AAAT-AT
1 AAAAATTATAAAATAAT
*
12246760 AAAAATTCTAAAATAAT
1 AAAAATTATAAAATAAT
12246777 AAAAAT
1 AAAAAT
12246783 AAATAAATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
15 8 0.40
16 4 0.20
17 8 0.40
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (17 bp):
AAAAATTATAAAATAAT
Found at i:12250875 original size:14 final size:15
Alignment explanation
Indices: 12250836--12250876 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
12250826 ACCCGACCCC
12250836 TAAATCCCTAAAC-CT
1 TAAATCCCT-AACTCT
12250851 TAAATCCCTAACTCT
1 TAAATCCCTAACTCT
12250866 TAAA-CCCTAAC
1 TAAATCCCTAAC
12250877 ATCTAACCCC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.39, C:0.34, G:0.00, T:0.27
Consensus pattern (15 bp):
TAAATCCCTAACTCT
Found at i:12251235 original size:15 final size:14
Alignment explanation
Indices: 12251207--12251258 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
12251197 TCCCGACCCT
12251207 TAAACTATAATCCC
1 TAAACTATAATCCC
*
12251221 TAAACTCATACTCCC
1 TAAACT-ATAATCCC
* *
12251236 TAAACTAAAAACCC
1 TAAACTATAATCCC
12251250 TAAACTATA
1 TAAACTATA
12251259 GTGATAATTA
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 19 0.59
15 13 0.41
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.25
Consensus pattern (14 bp):
TAAACTATAATCCC
Found at i:12251583 original size:41 final size:41
Alignment explanation
Indices: 12251526--12251638 Score: 190
Period size: 41 Copynumber: 2.8 Consensus size: 41
12251516 GAAAATGTTT
*
12251526 TTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGATAAGAACA
1 TTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACAAGAACA
* *
12251567 TTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACCAGAGCA
1 TTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACAAGAACA
*
12251608 TTAGCAGCGCTTCTTCAAAAACGCCGCTAAA
1 TTAGCGGCGCTTCTTCAAAAACGCCGCTAAA
12251639 TCCCCAAAAA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 68 1.00
ACGTcount: A:0.34, C:0.27, G:0.19, T:0.19
Consensus pattern (41 bp):
TTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGACAAGAACA
Found at i:12251724 original size:37 final size:40
Alignment explanation
Indices: 12251677--12251805 Score: 97
Period size: 40 Copynumber: 3.3 Consensus size: 40
12251667 TTAGGTTTAG
* **
12251677 TTTTTTGCGGCGCTTT-GGAAAA-CGCCGCTAATTA-TC-A
1 TTTTTAGCGGCGCTTTCAAAAAAGCGCCGCTAA-TACTCGA
* *
12251714 TTTTTAGCGGCGTTTTCAAAAAAGCGCTGCTAATACTCGA
1 TTTTTAGCGGCGCTTTCAAAAAAGCGCCGCTAATACTCGA
* ** *** *
12251754 TCTTTAGCGGCGCTTTTTAGGTAGCGCCGCTAATGA-TTGA
1 TTTTTAGCGGCGCTTTCAAAAAAGCGCCGCTAAT-ACTCGA
12251794 TTTTTAGCGGCG
1 TTTTTAGCGGCG
12251806 TTTTTTATCC
Statistics
Matches: 72, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
37 14 0.19
38 6 0.08
39 10 0.14
40 41 0.57
41 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.24, T:0.35
Consensus pattern (40 bp):
TTTTTAGCGGCGCTTTCAAAAAAGCGCCGCTAATACTCGA
Found at i:12251780 original size:40 final size:40
Alignment explanation
Indices: 12251736--12251812 Score: 102
Period size: 40 Copynumber: 1.9 Consensus size: 40
12251726 TTTTCAAAAA
*
12251736 AGCGCTGCTAAT-ACTCGATCTTTAGCGGCGCTTTTTAGGT
1 AGCGCCGCTAATGA-TCGATCTTTAGCGGCGCTTTTTAGGT
* * *
12251776 AGCGCCGCTAATGATTGATTTTTAGCGGCGTTTTTTA
1 AGCGCCGCTAATGATCGATCTTTAGCGGCGCTTTTTA
12251813 TCCAAACGCC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 31 0.97
41 1 0.03
ACGTcount: A:0.18, C:0.19, G:0.25, T:0.38
Consensus pattern (40 bp):
AGCGCCGCTAATGATCGATCTTTAGCGGCGCTTTTTAGGT
Found at i:12257672 original size:86 final size:85
Alignment explanation
Indices: 12257575--12257734 Score: 216
Period size: 86 Copynumber: 1.9 Consensus size: 85
12257565 ATATGTTATC
* * *
12257575 TCGTGTAAGACCACGTCTGGGA-CGTTGGCATCGAT-TTGAGATTTACATGTAAGACCATGTCTG
1 TCGTGTAAGACCACGTCTGGGACCG-TGGCATCGATATT-AGA-TTACATGTAAGACAACGTCTA
12257638 GGACATTGGCATCATATATGATT
63 GGACATTGGCATCATATATGATT
** *
12257661 TCGTGTAAGACCTTGTCTGGGACCGTGGCATCGATATTTGATTACATGTAAGACAACGTCTAGGA
1 TCGTGTAAGACCACGTCTGGGACCGTGGCATCGATATTAGATTACATGTAAGACAACGTCTAGGA
*
12257726 CGTTGGCAT
66 CATTGGCAT
12257735 TGTATACGCT
Statistics
Matches: 65, Mismatches: 7, Indels: 5
0.84 0.09 0.06
Matches are distributed among these distances:
85 29 0.45
86 32 0.49
87 4 0.06
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (85 bp):
TCGTGTAAGACCACGTCTGGGACCGTGGCATCGATATTAGATTACATGTAAGACAACGTCTAGGA
CATTGGCATCATATATGATT
Found at i:12257733 original size:43 final size:43
Alignment explanation
Indices: 12257578--12257734 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 43
12257568 TGTTATCTCG
*
12257578 TGTAAGACCACGTCTGGGACGTTGGCATCGAT-TTGAGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATT-TGA-TTACA
* * * * *
12257622 TGTAAGACCATGTCTGGGACATTGGCATC-ATATATGATTTCG
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
**
12257664 TGTAAGACCTTGTCTGGGACCG-TGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTGGGA-CGTTGGCATCGATATTTGATTACA
* *
12257707 TGTAAGACAACGTCTAGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
12257735 TGTATACGCT
Statistics
Matches: 94, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
42 30 0.32
43 36 0.38
44 28 0.30
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:12259321 original size:41 final size:42
Alignment explanation
Indices: 12259259--12259385 Score: 152
Period size: 43 Copynumber: 3.0 Consensus size: 42
12259249 TAACTGTTAC
12259259 ACGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGAT
* * * *
12259301 ACGG-GGAATCAGCACATAGCAACC-CCTT-TCACGGTTAAGGAT
1 ACGGTGGAATCAGCACTTAGCAACCACCTTAT-A--ATCAATGAT
*
12259343 ACGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGAT
1 ACGGTGGAATCAGCACTTAGCAACCACC-TTATAATCAATGAT
12259386 GCGGATTCAC
Statistics
Matches: 70, Mismatches: 8, Indels: 13
0.77 0.09 0.14
Matches are distributed among these distances:
39 1 0.01
40 5 0.07
41 19 0.27
42 14 0.20
43 25 0.36
44 2 0.03
45 3 0.04
46 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.19, T:0.24
Consensus pattern (42 bp):
ACGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGAT
Found at i:12259489 original size:51 final size:49
Alignment explanation
Indices: 12259397--12259582 Score: 178
Period size: 51 Copynumber: 3.7 Consensus size: 49
12259387 CGGATTCACA
* *
12259397 TAGTAGCATGCACATAGTACTACACATGTGACCATCACTATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA--ACTATCCGATACACG
* * * *
12259448 TAGTAGCCTGCACATAGTACTACAAACGTGATCGAAGCTATCC-AGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCAA-CTATCCGA-TACACG
* * * * * *
12259499 TAGTGGCCTGCACATAGTACTACACATGCGACCTA-TCATTCTGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCAACT-A-TCCGATACACG
*
12259549 TAGTAGCCTACACATAGTACTACACACGTGACCA
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA
12259583 TCACTTTCAC
Statistics
Matches: 108, Mismatches: 21, Indels: 13
0.76 0.15 0.09
Matches are distributed among these distances:
48 1 0.01
49 1 0.01
50 39 0.36
51 65 0.60
52 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (49 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCAACTATCCGATACACG
Found at i:12259571 original size:101 final size:102
Alignment explanation
Indices: 12259395--12259579 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 102
12259385 TGCGGATTCA
* *
12259395 CATAGTAGCATGCACATAGTACTACACATGTGACCATCACTATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCATGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTACA
12259460 CATAGTACTACAAACGTGATCGAAGCTATCCAGTACG
66 CATAGTACTACAAACGTGATCGAAGCTATCCAGTACG
* * * *
12259497 CATAGTGGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTAGCCTAC
1 CATAGTAGCATGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACGTAGTAGCCTAC
*
12259560 ACATAGTACTACACACGTGA
65 ACATAGTACTACAAACGTGA
12259580 CCATCACTTT
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
101 38 0.51
102 33 0.44
103 4 0.05
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (102 bp):
CATAGTAGCATGCACATAGTACTACACATGCGACCATCACTATCCGATACACGTAGTAGCCTACA
CATAGTACTACAAACGTGATCGAAGCTATCCAGTACG
Found at i:12265654 original size:13 final size:13
Alignment explanation
Indices: 12265636--12265660 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12265626 TTTACTGGAA
12265636 TCTTATTTCTTTC
1 TCTTATTTCTTTC
12265649 TCTTATTTCTTT
1 TCTTATTTCTTT
12265661 TTCATTTTTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (13 bp):
TCTTATTTCTTTC
Found at i:12268708 original size:26 final size:26
Alignment explanation
Indices: 12268677--12268730 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
12268667 GAAGTTGGGA
12268677 TTGGTTTAGTATTTCAGTTCATTGGC
1 TTGGTTTAGTATTTCAGTTCATTGGC
*
12268703 TTGGTTTAGTGTTTCAGTTCATTGGC
1 TTGGTTTAGTATTTCAGTTCATTGGC
12268729 TT
1 TT
12268731 TCTTAAATTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.13, C:0.11, G:0.24, T:0.52
Consensus pattern (26 bp):
TTGGTTTAGTATTTCAGTTCATTGGC
Found at i:12269652 original size:23 final size:22
Alignment explanation
Indices: 12269626--12269668 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
12269616 ATCACTATTA
12269626 TTAAATATATTTATTAATTTAGT
1 TTAAATATATTTATT-ATTTAGT
*
12269649 TTAAATATATTTCTTATTTA
1 TTAAATATATTTATTATTTA
12269669 TCATGACCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (22 bp):
TTAAATATATTTATTATTTAGT
Found at i:12276982 original size:15 final size:17
Alignment explanation
Indices: 12276946--12276982 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
12276936 TCCCCTCCCC
12276946 TTAAAAAGATCTACCTA
1 TTAAAAAGATCTACCTA
*
12276963 TTAAAAA-ATTTACC-A
1 TTAAAAAGATCTACCTA
12276978 TTAAA
1 TTAAA
12276983 CGATGACATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
15 6 0.32
16 6 0.32
17 7 0.37
ACGTcount: A:0.51, C:0.14, G:0.03, T:0.32
Consensus pattern (17 bp):
TTAAAAAGATCTACCTA
Found at i:12277498 original size:17 final size:18
Alignment explanation
Indices: 12277476--12277510 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
12277466 CTAGTTGTTG
12277476 TTTTTAA-TAATTTTTAT
1 TTTTTAATTAATTTTTAT
12277493 TTTTTAATTAATTTTTAT
1 TTTTTAATTAATTTTTAT
12277511 AACTTCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTTAATTAATTTTTAT
Found at i:12277507 original size:11 final size:10
Alignment explanation
Indices: 12277476--12277550 Score: 61
Period size: 10 Copynumber: 7.7 Consensus size: 10
12277466 CTAGTTGTTG
12277476 TTTTTAATAA
1 TTTTTAATAA
12277486 TTTTT-AT--
1 TTTTTAATAA
12277493 TTTTTAATTAA
1 TTTTTAA-TAA
12277504 TTTTT-ATAA
1 TTTTTAATAA
*
12277513 CTTCTT-ATAA
1 -TTTTTAATAA
*
12277523 TTCTTAATAA
1 TTTTTAATAA
12277533 TTTTTAAATAA
1 TTTTT-AATAA
*
12277544 ATTTTAA
1 TTTTTAA
12277551 ATTATATAAA
Statistics
Matches: 55, Mismatches: 3, Indels: 14
0.76 0.04 0.19
Matches are distributed among these distances:
7 5 0.09
8 1 0.02
9 11 0.20
10 24 0.44
11 14 0.25
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (10 bp):
TTTTTAATAA
Found at i:12283257 original size:25 final size:26
Alignment explanation
Indices: 12283191--12283258 Score: 102
Period size: 26 Copynumber: 2.7 Consensus size: 26
12283181 CCCAATATTA
12283191 CCCCAGTAAAATTTTGACGATTTTAC
1 CCCCAGTAAAATTTTGACGATTTTAC
*
12283217 CCCCAATAAAATTTTGACGATTTTA-
1 CCCCAGTAAAATTTTGACGATTTTAC
**
12283242 CCCTGGTAAAATTTTGA
1 CCCCAGTAAAATTTTGA
12283259 GAAAATTTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
25 14 0.37
26 24 0.63
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.35
Consensus pattern (26 bp):
CCCCAGTAAAATTTTGACGATTTTAC
Found at i:12283514 original size:9 final size:10
Alignment explanation
Indices: 12283484--12283521 Score: 55
Period size: 9 Copynumber: 4.1 Consensus size: 10
12283474 TGAATGTTTC
12283484 TCATTTCTAT
1 TCATTTCTAT
12283494 T--TTTCTAT
1 TCATTTCTAT
12283502 TCATTTC-AT
1 TCATTTCTAT
12283511 TCATTTCTAT
1 TCATTTCTAT
12283521 T
1 T
12283522 TAAACACGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
8 8 0.32
9 9 0.36
10 8 0.32
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.63
Consensus pattern (10 bp):
TCATTTCTAT
Found at i:12285496 original size:43 final size:43
Alignment explanation
Indices: 12285428--12285555 Score: 168
Period size: 43 Copynumber: 3.0 Consensus size: 43
12285418 TTATCTTAGA
*
12285428 AAAAAAGGAATTT-AAAAAGTGGAGAAGATAATCTTGGGTTGTTG
1 AAAAAA-GAATTTAAAAAAAT-GAGAAGATAATCTTGGGTTGTTG
*
12285472 AAAAAATAATTTAAAAAAATGAGAAGATAATCTTGGGTTGTTG
1 AAAAAAGAATTTAAAAAAATGAGAAGATAATCTTGGGTTGTTG
* * * * *
12285515 AAAAAAGAACTTAAAAAGAGGAGAAGATAAACATGGGTTGT
1 AAAAAAGAATTTAAAAAAATGAGAAGATAATCTTGGGTTGT
12285556 CGGGTTTACC
Statistics
Matches: 75, Mismatches: 8, Indels: 3
0.87 0.09 0.03
Matches are distributed among these distances:
43 63 0.84
44 12 0.16
ACGTcount: A:0.48, C:0.03, G:0.23, T:0.25
Consensus pattern (43 bp):
AAAAAAGAATTTAAAAAAATGAGAAGATAATCTTGGGTTGTTG
Found at i:12294547 original size:16 final size:15
Alignment explanation
Indices: 12294514--12294555 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
12294504 AGATGATAAT
12294514 TATTAATATATAATTA
1 TATTAAT-TATAATTA
*
12294530 TATTCATTATAATATA
1 TATTAATTATAAT-TA
12294546 TATTAATTAT
1 TATTAATTAT
12294556 TATCAGCTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 6 0.26
16 17 0.74
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:12301799 original size:21 final size:21
Alignment explanation
Indices: 12301775--12301819 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
12301765 TTTTAATGCT
*
12301775 TGATTTATATA-GGTTTGGTCA
1 TGATATATATATGGTTTGG-CA
*
12301796 TGATATATATATGTTTTGGCA
1 TGATATATATATGGTTTGGCA
12301817 TGA
1 TGA
12301820 AGTAATTATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 15 0.71
22 6 0.29
ACGTcount: A:0.27, C:0.04, G:0.22, T:0.47
Consensus pattern (21 bp):
TGATATATATATGGTTTGGCA
Found at i:12309249 original size:44 final size:43
Alignment explanation
Indices: 12309197--12309309 Score: 126
Period size: 44 Copynumber: 2.6 Consensus size: 43
12309187 TGTGTTATCG
*
12309197 TATAAGACCACGTCTGGGACGTTGGCATCGACT-TGTGACA-TACG
1 TATAAGACCACGTCTGGGACGTTGGCATCGA-TATGT-A-ATTACA
* *
12309241 TGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATGTAATTACA
1 TATAAGACCAC-GTCTGGGA-CGTTGGCATCGATATGTAATTACA
12309284 TATAAGACCACGTCTGGGACGTTGGC
1 TATAAGACCACGTCTGGGACGTTGGC
12309310 GTTGTACGAA
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
42 2 0.03
43 26 0.45
44 29 0.50
45 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (43 bp):
TATAAGACCACGTCTGGGACGTTGGCATCGATATGTAATTACA
Found at i:12310043 original size:21 final size:21
Alignment explanation
Indices: 12310019--12310058 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
12310009 ATGCTTGAGT
12310019 TATATA-GTTTTGGTCATGATA
1 TATATATGTTTTGG-CATGATA
12310040 TATATATGTTTTGGCATGA
1 TATATATGTTTTGGCATGA
12310059 AGTAATTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.28, C:0.05, G:0.20, T:0.47
Consensus pattern (21 bp):
TATATATGTTTTGGCATGATA
Found at i:12311996 original size:48 final size:47
Alignment explanation
Indices: 12311920--12312116 Score: 198
Period size: 48 Copynumber: 4.1 Consensus size: 47
12311910 AATAGATTTC
* *
12311920 TCGGTGGCCTGCACACAGTCCGTACCACCTTTGTGTAGTAACAGATTC
1 TCGGTGGCCTGCACACAGTCCGTACCACCCTTGTGTA-TAACAGATTA
* * * * *
12311968 TCGGTGGCCTGCACATAGTCTGTGCCACCCTTGTATCTTAACA-AGTTA
1 TCGGTGGCCTGCACACAGTCCGTACCACCCTTGTGT-ATAACAGA-TTA
* * * * *
12312016 TTGGTGGCCTACACACAATCCGTACCACCCTTGTGTCACAACAGAATA
1 TCGGTGGCCTGCACACAGTCCGTACCACCCTTGTGT-ATAACAGATTA
** * *
12312064 TCGGTGGCCTGCACACAGTCCGTGTCACCCTTGTGTCACAACAGAATA
1 TCGGTGGCCTGCACACAGTCCGTACCACCCTTGTGT-ATAACAGATTA
12312112 TCGGT
1 TCGGT
12312117 ACGCATAGTA
Statistics
Matches: 124, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
47 1 0.01
48 122 0.98
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.26
Consensus pattern (47 bp):
TCGGTGGCCTGCACACAGTCCGTACCACCCTTGTGTATAACAGATTA
Found at i:12312093 original size:96 final size:96
Alignment explanation
Indices: 12311922--12312097 Score: 255
Period size: 96 Copynumber: 1.8 Consensus size: 96
12311912 TAGATTTCTC
* * * * * * *
12311922 GGTGGCCTGCACACAGTCCGTACCACCTTTGTGTAGTAACAGATTCTCGGTGGCCTGCACATAGT
1 GGTGGCCTACACACAATCCGTACCACCCTTGTGTAGCAACAGAATATCGGTGGCCTGCACACAGT
*
12311987 CTGTGCCACCCTTGTATCTTAACAAGTTATT
66 CCGTGCCACCCTTGTATCTTAACAAGTTATT
12312018 GGTGGCCTACACACAATCCGTACCACCCTTGTGTCA-CAACAGAATATCGGTGGCCTGCACACAG
1 GGTGGCCTACACACAATCCGTACCACCCTTGTGT-AGCAACAGAATATCGGTGGCCTGCACACAG
*
12312082 TCCGTGTCACCCTTGT
65 TCCGTGCCACCCTTGT
12312098 GTCACAACAG
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
96 69 0.99
97 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.22, T:0.27
Consensus pattern (96 bp):
GGTGGCCTACACACAATCCGTACCACCCTTGTGTAGCAACAGAATATCGGTGGCCTGCACACAGT
CCGTGCCACCCTTGTATCTTAACAAGTTATT
Found at i:12316577 original size:16 final size:16
Alignment explanation
Indices: 12316556--12316594 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
12316546 AGGTTGGTAA
12316556 TTTTGTTG-TTCTTTGT
1 TTTTGTTGATT-TTTGT
12316572 TTTTGTTGAATTTTTGT
1 TTTTGTTG-ATTTTTGT
12316589 TTTTGT
1 TTTTGT
12316595 CTTGCTTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 8 0.38
17 11 0.52
18 2 0.10
ACGTcount: A:0.05, C:0.03, G:0.18, T:0.74
Consensus pattern (16 bp):
TTTTGTTGATTTTTGT
Found at i:12317786 original size:81 final size:81
Alignment explanation
Indices: 12317651--12317814 Score: 328
Period size: 81 Copynumber: 2.0 Consensus size: 81
12317641 TGTGCGCCTG
12317651 ATCAACCTCAGCTTCCGTAAACATGAATAAGTCATCTGCAAAGAAAGGTGTGAAATGGGCAGACC
1 ATCAACCTCAGCTTCCGTAAACATGAATAAGTCATCTGCAAAGAAAGGTGTGAAATGGGCAGACC
12317716 ATCCTTACCCAGTACA
66 ATCCTTACCCAGTACA
12317732 ATCAACCTCAGCTTCCGTAAACATGAATAAGTCATCTGCAAAGAAAGGTGTGAAATGGGCAGACC
1 ATCAACCTCAGCTTCCGTAAACATGAATAAGTCATCTGCAAAGAAAGGTGTGAAATGGGCAGACC
12317797 ATCCTTACCCAGTACA
66 ATCCTTACCCAGTACA
12317813 AT
1 AT
12317815 AGGTTTCTAA
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 83 1.00
ACGTcount: A:0.36, C:0.24, G:0.18, T:0.21
Consensus pattern (81 bp):
ATCAACCTCAGCTTCCGTAAACATGAATAAGTCATCTGCAAAGAAAGGTGTGAAATGGGCAGACC
ATCCTTACCCAGTACA
Found at i:12324726 original size:30 final size:30
Alignment explanation
Indices: 12324642--12324727 Score: 93
Period size: 30 Copynumber: 2.8 Consensus size: 30
12324632 TTTGAGGGAT
*
12324642 TTAATGAGAATTTTCAAAAATTTTGGTAGGC
1 TTAATGAGAA-TTTAAAAAATTTTGGTAGGC
* * *
12324673 CTAATTAGAACTTTAACAAATTTTGG-AGGC
1 TTAATGAGAA-TTTAAAAAATTTTGGTAGGC
*
12324703 TTAATGAGAGTTCTAAAAAATTTTG
1 TTAATGAGAATT-TAAAAAATTTTG
12324728 AAATGCTTCA
Statistics
Matches: 45, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
29 2 0.04
30 22 0.49
31 21 0.47
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.37
Consensus pattern (30 bp):
TTAATGAGAATTTAAAAAATTTTGGTAGGC
Found at i:12325133 original size:22 final size:21
Alignment explanation
Indices: 12325103--12325157 Score: 56
Period size: 23 Copynumber: 2.5 Consensus size: 21
12325093 AAAGGTAATT
* * *
12325103 TTATCATTTTAATAGATTATGA
1 TTATAATTTTAAAAGATTA-AA
12325125 TTATAATTTTTAAAAGATTAAA
1 TTATAA-TTTTAAAAGATTAAA
*
12325147 TTAAAATTTTA
1 TTATAATTTTA
12325158 TATAAAAGAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 5 0.18
22 11 0.39
23 12 0.43
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (21 bp):
TTATAATTTTAAAAGATTAAA
Found at i:12325191 original size:11 final size:11
Alignment explanation
Indices: 12325175--12325199 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
12325165 GATCTAAATG
12325175 TAAAGTATGCA
1 TAAAGTATGCA
12325186 TAAAGTATGCA
1 TAAAGTATGCA
12325197 TAA
1 TAA
12325200 GAATATTATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.08, G:0.16, T:0.28
Consensus pattern (11 bp):
TAAAGTATGCA
Found at i:12325680 original size:16 final size:16
Alignment explanation
Indices: 12325655--12325692 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
12325645 TTGAATTACT
* *
12325655 ATTACGCCTCTATTTC
1 ATTACACCTCTATTCC
12325671 ATTACACCTCTATTCC
1 ATTACACCTCTATTCC
12325687 ATTACA
1 ATTACA
12325693 GCAAACCAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.26, C:0.32, G:0.03, T:0.39
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:12331796 original size:12 final size:13
Alignment explanation
Indices: 12331772--12331800 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
12331762 GGACTATAAC
12331772 TATTGCATTTATT
1 TATTGCATTTATT
12331785 TATTGC-TTTATT
1 TATTGCATTTATT
12331797 TATT
1 TATT
12331801 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:12342362 original size:15 final size:15
Alignment explanation
Indices: 12342342--12342370 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
12342332 TGTTATATGC
12342342 AATAACCCGGATGAT
1 AATAACCCGGATGAT
12342357 AATAACCCGGATGA
1 AATAACCCGGATGA
12342371 CATTTTTCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.21, G:0.21, T:0.17
Consensus pattern (15 bp):
AATAACCCGGATGAT
Found at i:12344224 original size:7 final size:7
Alignment explanation
Indices: 12344212--12344238 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
12344202 CAAAATAGAT
12344212 GTCCAAA
1 GTCCAAA
12344219 GTCCAAA
1 GTCCAAA
12344226 GTCCAAA
1 GTCCAAA
12344233 GTCCAA
1 GTCCAA
12344239 TTACAACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.41, C:0.30, G:0.15, T:0.15
Consensus pattern (7 bp):
GTCCAAA
Found at i:12345250 original size:14 final size:14
Alignment explanation
Indices: 12345228--12345267 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
12345218 CATTCATCCA
*
12345228 TAATTAATTAATTT
1 TAATCAATTAATTT
*
12345242 TAATCAATTGATTT
1 TAATCAATTAATTT
12345256 TAATC-ATTAATT
1 TAATCAATTAATT
12345268 AAGGTACTAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
13 6 0.26
14 17 0.74
ACGTcount: A:0.40, C:0.05, G:0.03, T:0.53
Consensus pattern (14 bp):
TAATCAATTAATTT
Found at i:12359022 original size:306 final size:306
Alignment explanation
Indices: 12358469--12359079 Score: 1150
Period size: 306 Copynumber: 2.0 Consensus size: 306
12358459 GTTTAGGGCC
* *
12358469 TCATGTGACTCGACTTGCATGCCACTTCGATCTCCTCGACACACCGAAGTAGTCTTCCTTGCTTA
1 TCATGTGACTCGACTTGCATGCCACTTCGATCTCCTCGACACACCGAAGCAGTCCTCCTTGCTTA
12358534 CACTAGTCGGCCAGATGTCCCCGCAAGGATTATTGAGCATGAGCCATATGAGGATGATTGAGCGA
66 CACTAGTCGGCCAGATGTCCCCGCAAGGATTATTGAGCATGAGCCATATGAGGATGATTGAGCGA
12358599 CTTTATGGAGTGGATCCACCTCAGTACCAATTATCTCATTTTGATCCTCAGGATGAACCCGAGGA
131 CTTTATGGAGTGGATCCACCTCAGTACCAATTATCTCATTTTGATCCTCAGGATGAACCCGAGGA
* *
12358664 CTTCACTGATGATGTCCCCTTCTATCACAAGGATCCACCTCATCATCCACCTTCAAGTCACCGTC
196 CTTCACTAACGATGTCCCCTTCTATCACAAGGATCCACCTCATCATCCACCTTCAAGTCACCGTC
12358729 CTGCTTCTTCTGCTGCTACCTTAGCAAACCTCTCCGAGTGGTTCAT
261 CTGCTTCTTCTGCTGCTACCTTAGCAAACCTCTCCGAGTGGTTCAT
12358775 TCATGTGACTCGACTTGCATGCCACTTCGATCTCCTCGACACACCGAAGCAGTCCTCCTTGCTTA
1 TCATGTGACTCGACTTGCATGCCACTTCGATCTCCTCGACACACCGAAGCAGTCCTCCTTGCTTA
*
12358840 CACTAGTCGGCCAGATGTCCTCGCAAGGATTATTGAGCATGAGCCATATGAGGATGATTGAGCGA
66 CACTAGTCGGCCAGATGTCCCCGCAAGGATTATTGAGCATGAGCCATATGAGGATGATTGAGCGA
* *
12358905 CTTTATGTAGTGGATCCACCTCAGTACCAATTATCTCATTTTGATCCTCAGGATGAACCTGAGGA
131 CTTTATGGAGTGGATCCACCTCAGTACCAATTATCTCATTTTGATCCTCAGGATGAACCCGAGGA
12358970 CTTCACTAACGATGTCCCCTTCTATCACAAGGATCCACCTCATCATCCACCTTCAAGTCACCGTC
196 CTTCACTAACGATGTCCCCTTCTATCACAAGGATCCACCTCATCATCCACCTTCAAGTCACCGTC
*
12359035 CTGCTTCTTCTGCTGCTACCTTAGCGAACCTCTCCGAGTGGTTCA
261 CTGCTTCTTCTGCTGCTACCTTAGCAAACCTCTCCGAGTGGTTCA
12359080 CTTGTTTCGA
Statistics
Matches: 297, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
306 297 1.00
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (306 bp):
TCATGTGACTCGACTTGCATGCCACTTCGATCTCCTCGACACACCGAAGCAGTCCTCCTTGCTTA
CACTAGTCGGCCAGATGTCCCCGCAAGGATTATTGAGCATGAGCCATATGAGGATGATTGAGCGA
CTTTATGGAGTGGATCCACCTCAGTACCAATTATCTCATTTTGATCCTCAGGATGAACCCGAGGA
CTTCACTAACGATGTCCCCTTCTATCACAAGGATCCACCTCATCATCCACCTTCAAGTCACCGTC
CTGCTTCTTCTGCTGCTACCTTAGCAAACCTCTCCGAGTGGTTCAT
Found at i:12362572 original size:28 final size:27
Alignment explanation
Indices: 12362524--12362577 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 27
12362514 TACATACATA
12362524 TGTATAATAAAAATAATTTAATATAGGT
1 TGTATAATAAAAATAATTTAA-ATAGGT
12362552 TGTATACAT-AAAA-AATATTAAATAGG
1 TGTATA-ATAAAAATAAT-TTAAATAGG
12362578 GATATTATCA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
27 8 0.33
28 14 0.58
29 2 0.08
ACGTcount: A:0.52, C:0.02, G:0.11, T:0.35
Consensus pattern (27 bp):
TGTATAATAAAAATAATTTAAATAGGT
Found at i:12362649 original size:18 final size:16
Alignment explanation
Indices: 12362626--12362661 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 16
12362616 AAATGGCTTT
12362626 TAAAAGTATATTATAAAA
1 TAAAAGT-TATTA-AAAA
12362644 TAAAAGTTATTAAAAA
1 TAAAAGTTATTAAAAA
12362660 TA
1 TA
12362662 TATTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 6 0.33
17 5 0.28
18 7 0.39
ACGTcount: A:0.61, C:0.00, G:0.06, T:0.33
Consensus pattern (16 bp):
TAAAAGTTATTAAAAA
Found at i:12369158 original size:23 final size:23
Alignment explanation
Indices: 12369132--12369440 Score: 104
Period size: 23 Copynumber: 13.1 Consensus size: 23
12369122 TGGACAGCTC
*
12369132 TTATACATCAATTTGGACAACAT
1 TTATACAACAATTTGGACAACAT
* * * * *
12369155 TTATATACCAAATTAGACAGCAT
1 TTATACAACAATTTGGACAACAT
* *
12369178 TT-TCACATCAAAATTTGGACAGCAT
1 TTAT-ACA--ACAATTTGGACAACAT
** *
12369203 AAATACAACAATTTTGGGCAACAT
1 TTATACAACAA-TTTGGACAACAT
* *
12369227 ATATACAACAATTT-GAGCAGCAT
1 TTATACAACAATTTGGA-CAACAT
* * * *
12369250 TTTTACACCAAAATTGGACAGCAT
1 TTATACAAC-AATTTGGACAACAT
** * * *
12369274 AAATTCAACAATTTGGGCAGCAT
1 TTATACAACAATTTGGACAACAT
* *
12369297 ATATACAACAATTT-GAGCAGCAT
1 TTATACAACAATTTGGA-CAACAT
* * * *
12369320 TTTTACACCAAAATTGGACAGCAT
1 TTATACAAC-AATTTGGACAACAT
** * * *
12369344 AAATTCAACAATTTGGGCAGCAT
1 TTATACAACAATTTGGACAACAT
* * *
12369367 ATATAAAACAATTT-GAGCAGCAT
1 TTATACAACAATTTGGA-CAACAT
* ** * *
12369390 TTTTACGCCAAAATTGGACAGCAT
1 TTATACAAC-AATTTGGACAACAT
* *
12369414 ATATACAACAAATTTGGACAGCAT
1 TTATACAAC-AATTTGGACAACAT
12369438 TTA
1 TTA
12369441 AGCATCAAAA
Statistics
Matches: 213, Mismatches: 59, Indels: 27
0.71 0.20 0.09
Matches are distributed among these distances:
22 4 0.02
23 108 0.51
24 79 0.37
25 21 0.10
26 1 0.00
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (23 bp):
TTATACAACAATTTGGACAACAT
Found at i:12369283 original size:47 final size:46
Alignment explanation
Indices: 12369224--12369485 Score: 201
Period size: 47 Copynumber: 5.6 Consensus size: 46
12369214 TTTTGGGCAA
12369224 CATATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAG
1 CATATATACAACAATTTG-GCAGCATTTTTACACCAAAATTGGACAG
* * * * * *
12369271 CATAAATTCAACAATTTGGGCAGCATATATACA--ACAATTTGAGCAG
1 CATATATACAACAATTT-GGCAGCATTTTTACACCAAAATTGGA-CAG
* * * * ** * * *
12369317 CATTTTTACACCAAAATTGGACAGCATAAATT-CAAC-AATTTGGGCAG
1 CATATATACAAC-AATTTGG-CAGCAT-TTTTACACCAAAATTGGACAG
* *
12369364 CATATATAAAACAATTTGAGCAGCATTTTTACGCCAAAATTGGACAG
1 CATATATACAACAATTTG-GCAGCATTTTTACACCAAAATTGGACAG
* *
12369411 CATATATACAACAAATTTGGACAGCA-TTTAAGCATCAAAATTGGACAG
1 CATATATACAAC-AATTTGG-CAGCATTTTTA-CACCAAAATTGGACAG
* *
12369459 CATATATGCAACAAATTGGGCAGCATT
1 CATATATACAAC-AATTTGGCAGCATT
12369486 GAAGCATCAC
Statistics
Matches: 166, Mismatches: 35, Indels: 27
0.73 0.15 0.12
Matches are distributed among these distances:
45 9 0.05
46 25 0.15
47 81 0.49
48 51 0.31
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (46 bp):
CATATATACAACAATTTGGCAGCATTTTTACACCAAAATTGGACAG
Found at i:12369309 original size:70 final size:70
Alignment explanation
Indices: 12369156--12369437 Score: 424
Period size: 70 Copynumber: 4.0 Consensus size: 70
12369146 GGACAACATT
* * * *
12369156 TATATACCA-AATTAGA-CAGCATTTTCACATCAAAATTTGGACAGCATAAATACAACAATTTTG
1 TATATACAACAATTTGAGCAGCATTTTTACACCAAAA-TTGGACAGCATAAATACAACAA-TTTG
*
12369219 GGCAACA
64 GGCAGCA
*
12369226 TATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAGCATAAATTCAACAATTTGGG
1 TATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAGCATAAATACAACAATTTGGG
12369291 CAGCA
66 CAGCA
*
12369296 TATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAGCATAAATTCAACAATTTGGG
1 TATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAGCATAAATACAACAATTTGGG
12369361 CAGCA
66 CAGCA
* * *
12369366 TATATAAAACAATTTGAGCAGCATTTTTACGCCAAAATTGGACAGCATATATACAACAAATTTGG
1 TATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAGCATAAATACAAC-AATTTGG
*
12369431 ACAGCA
65 GCAGCA
12369437 T
1 T
12369438 TTAAGCATCA
Statistics
Matches: 198, Mismatches: 11, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
70 141 0.71
71 40 0.20
72 17 0.09
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.27
Consensus pattern (70 bp):
TATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAGCATAAATACAACAATTTGGG
CAGCA
Found at i:12369315 original size:20 final size:22
Alignment explanation
Indices: 12369189--12369389 Score: 141
Period size: 23 Copynumber: 8.6 Consensus size: 22
12369179 TTCACATCAA
12369189 AATTTGGACAGCATAAATACAAC
1 AATTTGG-CAGCATAAATACAAC
* *
12369212 AATTTTGGGCAACATATATACAAC
1 AA-TTT-GGCAGCATAAATACAAC
*** *
12369236 AATTTGAGCAGCATTTTTACACC
1 AATTTG-GCAGCATAAATACAAC
* *
12369259 AAAATTGGACAGCATAAATTCAAC
1 -AATTTGG-CAGCATAAATACAAC
*
12369283 AATTTGGGCAGCATATATACAAC
1 AATTT-GGCAGCATAAATACAAC
*** *
12369306 AATTTGAGCAGCATTTTTACACC
1 AATTTG-GCAGCATAAATACAAC
* *
12369329 AAAATTGGACAGCATAAATTCAAC
1 -AATTTGG-CAGCATAAATACAAC
* *
12369353 AATTTGGGCAGCATATATAAAAC
1 AATTT-GGCAGCATAAATACAAC
12369376 AATTTGAGCAGCAT
1 AATTTG-GCAGCAT
12369390 TTTTACGCCA
Statistics
Matches: 139, Mismatches: 28, Indels: 22
0.74 0.15 0.12
Matches are distributed among these distances:
22 3 0.02
23 82 0.59
24 52 0.37
25 2 0.01
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.27
Consensus pattern (22 bp):
AATTTGGCAGCATAAATACAAC
Found at i:12369425 original size:24 final size:24
Alignment explanation
Indices: 12369164--12369484 Score: 196
Period size: 24 Copynumber: 13.6 Consensus size: 24
12369154 TTTATATACC
* * *
12369164 AAATTAGACAGCAT-TTTCACATCA
1 AAATTGGACAGCATATAT-ACAACA
*
12369188 AAATTTGGACAGCATAAATACAACA
1 AAA-TTGGACAGCATATATACAACA
** * *
12369213 ATTTTGGGCAACATATATACAAC-
1 AAATTGGACAGCATATATACAACA
* * * *
12369236 -AATTTGAGCAGCATTTTTACACCA
1 AAATTGGA-CAGCATATATACAACA
* *
12369260 AAATTGGACAGCATAAATTCAAC-
1 AAATTGGACAGCATATATACAACA
* *
12369283 AATTTGGGCAGCATATATACAAC-
1 AAATTGGACAGCATATATACAACA
* * * *
12369306 -AATTTGAGCAGCATTTTTACACCA
1 AAATTGGA-CAGCATATATACAACA
* *
12369330 AAATTGGACAGCATAAATTCAAC-
1 AAATTGGACAGCATATATACAACA
* *
12369353 AATTTGGGCAGCATATATA-AA-A
1 AAATTGGACAGCATATATACAACA
* * * * **
12369375 CAATTTGAGCAGCATTTTTACGCCA
1 AAATTGGA-CAGCATATATACAACA
12369400 AAATTGGACAGCATATATACAACA
1 AAATTGGACAGCATATATACAACA
* * *
12369424 AATTTGGACAGCATTTA-AGCATCA
1 AAATTGGACAGCATATATA-CAACA
*
12369448 AAATTGGACAGCATATATGCAAC-
1 AAATTGGACAGCATATATACAACA
*
12369471 AAATTGGGCAGCAT
1 AAATTGGACAGCAT
12369485 TGAAGCATCA
Statistics
Matches: 218, Mismatches: 65, Indels: 29
0.70 0.21 0.09
Matches are distributed among these distances:
22 13 0.06
23 80 0.37
24 89 0.41
25 35 0.16
26 1 0.00
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (24 bp):
AAATTGGACAGCATATATACAACA
Found at i:12370534 original size:43 final size:43
Alignment explanation
Indices: 12370486--12370598 Score: 126
Period size: 43 Copynumber: 2.6 Consensus size: 43
12370476 AACTCGTACA
* *
12370486 ATGCCAACGTCCCATACGTGGTCTTACATGTAATC-TCATA-TCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACAT-A-AGTCG
12370529 ATGCC-ACTGTCCCAGACAG-GGTCTTACATGTAAACATAAGTCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGTAAACATAAGTCG
* *
12370572 ATGCCAATGTCCTAGACGTGGTCTTAC
1 ATGCCAACGTCCCAGACGTGGTCTTAC
12370599 GCGATAACAC
Statistics
Matches: 60, Mismatches: 4, Indels: 12
0.79 0.05 0.16
Matches are distributed among these distances:
42 4 0.07
43 53 0.88
44 3 0.05
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGTAAACATAAGTCG
Found at i:12377019 original size:23 final size:22
Alignment explanation
Indices: 12376992--12377048 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 22
12376982 TTTACACCAA
* *
12376992 AATTTGGACATCATAAATATAAC
1 AATTTGG-CAGCATAAATACAAC
*
12377015 AATTTTGGCAGCATATATACAAC
1 AA-TTTGGCAGCATAAATACAAC
12377038 AATTTGAGCAG
1 AATTTG-GCAG
12377049 TATTTTTACA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 4 0.14
23 20 0.69
24 5 0.17
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (22 bp):
AATTTGGCAGCATAAATACAAC
Found at i:12377754 original size:37 final size:37
Alignment explanation
Indices: 12377678--12377959 Score: 217
Period size: 37 Copynumber: 7.6 Consensus size: 37
12377668 ATACTAAATG
* * **
12377678 GCTCAAATGAGTAATGTCTACT-ATTATACTGAATAT
1 GCTCAAATGAGCAATATCTACTGATTATACTGAACGT
*
12377714 GCTCAAATGAGCAATATCTACTGA-AACTACTGAACGT
1 GCTCAAATGAGCAATATCTACTGATTA-TACTGAACGT
* * *
12377751 GCTCAAAAGAGCAATATCTACTGATTATATTGAAAGTT
1 GCTCAAATGAGCAATATCTACTGATTATACTGAACG-T
* * * * *
12377789 GCTCAAATGAGCGATATCCACTGATTATACTAAATGG
1 GCTCAAATGAGCAATATCTACTGATTATACTGAACGT
* * * * * *
12377826 GCTCAAACGACCAATATTTACTAAATATATTGAACGT
1 GCTCAAATGAGCAATATCTACTGATTATACTGAACGT
* * * *
12377863 GCTCAAAAGAGCAATGTCTACTAATTATACTGAAAGTT
1 GCTCAAATGAGCAATATCTACTGATTATACTGAACG-T
* ** * * * * *
12377901 GCTCAGACAAGCGATATCCACTGATTACACTGAATGG
1 GCTCAAATGAGCAATATCTACTGATTATACTGAACGT
** *
12377938 GCTCAAACAAGCGATATCTACT
1 GCTCAAATGAGCAATATCTACT
12377960 TGTTATATAG
Statistics
Matches: 195, Mismatches: 46, Indels: 9
0.78 0.18 0.04
Matches are distributed among these distances:
36 21 0.11
37 114 0.58
38 60 0.31
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (37 bp):
GCTCAAATGAGCAATATCTACTGATTATACTGAACGT
Found at i:12377800 original size:75 final size:74
Alignment explanation
Indices: 12377667--12377893 Score: 203
Period size: 75 Copynumber: 3.1 Consensus size: 74
12377657 AGAAAAATGG
* * * * *
12377667 AATACTAAA-TGGCTCAAATGAGTAATGTCTACTATTATACTG-AA-TATGCTCAAATGAGCAAT
1 AATACTAAACGGGCTCAAAAGAGCAATATCTACTATTATATTGAAAGT-TGCTCAAATGAGCAAT
12377729 ATCTACTGA-
65 ATCTACTGAT
* * *
12377738 AACTACTGAACGTGCTCAAAAGAGCAATATCTACTGATTATATTGAAAGTTGCTCAAATGAGCGA
1 AA-TACTAAACGGGCTCAAAAGAGCAATATCTACT-ATTATATTGAAAGTTGCTCAAATGAGCAA
*
12377803 TATCCACTGAT
64 TATCTACTGAT
* * * * * * * *
12377814 TATACTAAATGGGCTCAAACGACCAATATTTACTAAATATATTGAACG-TGCTCAAAAGAGCAAT
1 AATACTAAACGGGCTCAAAAGAGCAATATCTACT-ATTATATTGAAAGTTGCTCAAATGAGCAAT
* *
12377878 GTCTACTAAT
65 ATCTACTGAT
*
12377888 TATACT
1 AATACT
12377894 GAAAGTTGCT
Statistics
Matches: 126, Mismatches: 24, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
71 2 0.02
72 6 0.05
73 19 0.15
74 35 0.28
75 62 0.49
76 2 0.02
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.30
Consensus pattern (74 bp):
AATACTAAACGGGCTCAAAAGAGCAATATCTACTATTATATTGAAAGTTGCTCAAATGAGCAATA
TCTACTGAT
Found at i:12377897 original size:112 final size:112
Alignment explanation
Indices: 12377678--12377959 Score: 343
Period size: 112 Copynumber: 2.5 Consensus size: 112
12377668 ATACTAAATG
** * * ** * * *
12377678 GCTCAAATGAGTAATGTCTACT-ATTATACTGAATATGCTCAAATGAGCAATATCTACTGAAACT
1 GCTCAAATGAGCGATATCCACTGATTATACTGAATGGGCTCAAACGACCAATATCTACTGAAAAT
* *
12377742 ACTGAACGTGCTCAAAAGAGCAATATCTACTGATTATATTGAAAGTT
66 ACTGAACGTGCTCAAAAGAGCAATATCTACTAATTATACTGAAAGTT
* *
12377789 GCTCAAATGAGCGATATCCACTGATTATACTAAATGGGCTCAAACGACCAATATTTACT-AAATA
1 GCTCAAATGAGCGATATCCACTGATTATACTGAATGGGCTCAAACGACCAATATCTACTGAAA-A
* *
12377853 TATTGAACGTGCTCAAAAGAGCAATGTCTACTAATTATACTGAAAGTT
65 TACTGAACGTGCTCAAAAGAGCAATATCTACTAATTATACTGAAAGTT
* ** * * * *
12377901 GCTCAGACAAGCGATATCCACTGATTACACTGAATGGGCTCAAACAAGCGATATCTACT
1 GCTCAAATGAGCGATATCCACTGATTATACTGAATGGGCTCAAACGACCAATATCTACT
12377960 TGTTATATAG
Statistics
Matches: 145, Mismatches: 24, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
111 21 0.14
112 124 0.86
ACGTcount: A:0.37, C:0.19, G:0.16, T:0.28
Consensus pattern (112 bp):
GCTCAAATGAGCGATATCCACTGATTATACTGAATGGGCTCAAACGACCAATATCTACTGAAAAT
ACTGAACGTGCTCAAAAGAGCAATATCTACTAATTATACTGAAAGTT
Found at i:12382955 original size:13 final size:13
Alignment explanation
Indices: 12382937--12382965 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
12382927 CAAATCAGTG
12382937 TACATTTTTACAC
1 TACATTTTTACAC
12382950 TACATTTTTACAC
1 TACATTTTTACAC
12382963 TAC
1 TAC
12382966 CGGGGTGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.24, G:0.00, T:0.45
Consensus pattern (13 bp):
TACATTTTTACAC
Found at i:12387512 original size:24 final size:24
Alignment explanation
Indices: 12387477--12387524 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
12387467 CAATAAATAC
* *
12387477 TCATTTAATAATC-GACATTTCTT
1 TCATATAATAATCAAACATTTCTT
12387500 TCATATAAGTAATCAAACATTTCTT
1 TCATATAA-TAATCAAACATTTCTT
12387525 AGCAATTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 7 0.33
24 5 0.24
25 9 0.43
ACGTcount: A:0.35, C:0.17, G:0.04, T:0.44
Consensus pattern (24 bp):
TCATATAATAATCAAACATTTCTT
Found at i:12387753 original size:23 final size:23
Alignment explanation
Indices: 12387727--12387779 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
12387717 ATAAGTGCCA
12387727 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
12387750 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
12387773 CACTGAT
1 CACTGAT
12387780 CAATAACACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.32, C:0.26, G:0.21, T:0.21
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:12393787 original size:21 final size:23
Alignment explanation
Indices: 12393736--12393788 Score: 56
Period size: 21 Copynumber: 2.4 Consensus size: 23
12393726 CATTTATAAA
* *
12393736 CATAAAAATTAAACTTTAAATCC
1 CATACAAATTAAACTTTAAAACC
* *
12393759 CATGCAAATT-AA-TTTAAAACT
1 CATACAAATTAAACTTTAAAACC
12393780 CATACAAAT
1 CATACAAAT
12393789 ATATCATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
21 15 0.60
22 2 0.08
23 8 0.32
ACGTcount: A:0.51, C:0.17, G:0.02, T:0.30
Consensus pattern (23 bp):
CATACAAATTAAACTTTAAAACC
Found at i:12395451 original size:3 final size:3
Alignment explanation
Indices: 12395443--12395482 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
12395433 GGAAATCTAG
12395443 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
12395483 GGCCAAAGCT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:12409471 original size:37 final size:38
Alignment explanation
Indices: 12409425--12409518 Score: 111
Period size: 37 Copynumber: 2.5 Consensus size: 38
12409415 ATCTTACTGC
* *
12409425 TATATTGAATGAAGCTCAATC-AAGCAAATCATACCGT
1 TATACTGAATGAAGCTCAATCTAAGCAAATCATACCAT
* * * *
12409462 TGTACTGAATGAAGCACAA-CTGAGCAATTCATACCAT
1 TATACTGAATGAAGCTCAATCTAAGCAAATCATACCAT
*
12409499 TATACTGAATGATGCTCAAT
1 TATACTGAATGAAGCTCAAT
12409519 TTAGTAAATA
Statistics
Matches: 46, Mismatches: 9, Indels: 3
0.79 0.16 0.05
Matches are distributed among these distances:
36 1 0.02
37 45 0.98
ACGTcount: A:0.38, C:0.19, G:0.15, T:0.28
Consensus pattern (38 bp):
TATACTGAATGAAGCTCAATCTAAGCAAATCATACCAT
Found at i:12414182 original size:95 final size:95
Alignment explanation
Indices: 12413990--12414229 Score: 390
Period size: 95 Copynumber: 2.5 Consensus size: 95
12413980 TTACTGAATT
**
12413990 GATTTGAGATCCCGTATAAGGTCATATCTGGGATATGGCATCGGCATCGATTTGAGATCCCGTAT
1 GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCAT-GATTTGAGATCCCGTAT
12414055 AAGACCATATATGGGATATGGCATCGGCATC
65 AAGACCATATATGGGATATGGCATCGGCATC
** *
12414086 GATTTGAGATCTTGTATAAGACCATATCTGGGATATGGCATCGGCATGATTTGTGATCCCGTATA
1 GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATGATTTGAGATCCCGTATA
* *
12414151 AGACCATATCTGGGATATGGCATCGGTATC
66 AGACCATATATGGGATATGGCATCGGCATC
* *
12414181 GATTTGAGATCCCGTATAAGACCATATTTGGGATATGGCATCGGTATGA
1 GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATGA
12414230 GACTTCGTGT
Statistics
Matches: 133, Mismatches: 11, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
95 90 0.68
96 43 0.32
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (95 bp):
GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATGATTTGAGATCCCGTATA
AGACCATATATGGGATATGGCATCGGCATC
Found at i:12414227 original size:48 final size:48
Alignment explanation
Indices: 12413990--12414224 Score: 391
Period size: 48 Copynumber: 4.9 Consensus size: 48
12413980 TTACTGAATT
**
12413990 GATTTGAGATCCCGTATAAGGTCATATCTGGGATATGGCATCGGCATC
1 GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATC
*
12414038 GATTTGAGATCCCGTATAAGACCATATATGGGATATGGCATCGGCATC
1 GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATC
**
12414086 GATTTGAGATCTTGTATAAGACCATATCTGGGATATGGCATCGGCAT-
1 GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATC
* *
12414133 GATTTGTGATCCCGTATAAGACCATATCTGGGATATGGCATCGGTATC
1 GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATC
*
12414181 GATTTGAGATCCCGTATAAGACCATATTTGGGATATGGCATCGG
1 GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGG
12414225 TATGAGACTT
Statistics
Matches: 174, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
47 43 0.25
48 131 0.75
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (48 bp):
GATTTGAGATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATC
Found at i:12417042 original size:16 final size:18
Alignment explanation
Indices: 12417015--12417047 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
12417005 TAGAATTGGG
12417015 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
12417032 TTGAG-AAATTAATTTA
1 TTGAGAAAATTAATTTA
12417048 GTTAATTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.45, C:0.00, G:0.12, T:0.42
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:12421254 original size:25 final size:25
Alignment explanation
Indices: 12421209--12421264 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
12421199 AGGCACCTGC
* *
12421209 AACAAACAAACTCAAGAGAAACAAA
1 AACAAACAAACCCAAGAGAAAAAAA
*
12421234 AACAAACAATACCCACG-GAAAAAAA
1 AACAAACAA-ACCCAAGAGAAAAAAA
12421259 AACAAA
1 AACAAA
12421265 AACGGATACC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 22 0.81
26 5 0.19
ACGTcount: A:0.68, C:0.21, G:0.07, T:0.04
Consensus pattern (25 bp):
AACAAACAAACCCAAGAGAAAAAAA
Found at i:12422399 original size:11 final size:11
Alignment explanation
Indices: 12422385--12422437 Score: 54
Period size: 11 Copynumber: 4.6 Consensus size: 11
12422375 ATTCAATGGT
12422385 TATTTTAATTC
1 TATTTTAATTC
* *
12422396 TATTTTGAGTC
1 TATTTTAATTC
12422407 TATTTTGAATTC
1 TATTTT-AATTC
12422419 ATATATTTAATT-
1 -TAT-TTTAATTC
12422431 TATTTTA
1 TATTTTA
12422438 GAACTTTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
10 4 0.11
11 18 0.51
12 3 0.09
13 7 0.20
14 3 0.09
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (11 bp):
TATTTTAATTC
Found at i:12429477 original size:44 final size:44
Alignment explanation
Indices: 12429411--12429812 Score: 269
Period size: 44 Copynumber: 8.7 Consensus size: 44
12429401 GAAAATGGCG
12429411 AATCTTATCTCCCTGATG-TTACAGTGGAGCAGATTGAAGCTAGA
1 AATCTTATCTCCCTGA-GATTACAGTGGAGCAGATTGAAGCTAGA
* * * *
12429455 AATCTCATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTCGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGA
* **
12429499 AATCCTATCTCCCTGAGATTACAGTGGAGC-GAATT-AAAATA-A
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAG-ATTGAAGCTAGA
* *
12429541 AGGATCTTATCTCTCTGA-AGTTACAGTAGAGTACATCGCATCAGATTGAAGCCAGA
1 A--ATCTTATCTCCCTGAGA-TTACAGT-G-G---A--G---CAGATTGAAGCTAGA
* * *
12429597 AATCTTATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGA
* * ** *
12429641 AATCCTATCTCCCTGAGATTACAGTGGAGCGGATT-AAAATAAA
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGA
** * * *
12429684 AGATCTTATCTCTATGA-AGTTATAGTAGAGTACATCGCATCAGATTGAAGCCATA
1 A-ATCTTATCTCCCTGAGA-TTACAGT-G-G---A--G---CAGATTGAAGCTAGA
* *
12429739 AATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGT
1 AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGA
* * *
12429783 AATCCTATCTCCTTGAGATTACAATGGAGC
1 AATCTTATCTCCCTGAGATTACAGTGGAGC
12429813 GAATTAAAAT
Statistics
Matches: 276, Mismatches: 49, Indels: 66
0.71 0.13 0.17
Matches are distributed among these distances:
42 1 0.00
43 12 0.04
44 188 0.68
45 2 0.01
46 2 0.01
47 2 0.01
49 4 0.01
51 2 0.01
52 1 0.00
53 2 0.01
54 47 0.17
55 11 0.04
56 2 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (44 bp):
AATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGA
Found at i:12429614 original size:142 final size:142
Alignment explanation
Indices: 12429440--12429868 Score: 750
Period size: 142 Copynumber: 3.0 Consensus size: 142
12429430 TACAGTGGAG
* * *
12429440 CAGATTGAAGCTAGAAATCTCATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTCGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
* *
12429505 ATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTATGAAGTTATAGTAG
12429570 AGTACATCGCAT
131 AGTACATCGCAT
*
12429582 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGAAGCAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
* *
12429647 ATCTCCCTGAGATTACAGTGGAGCGGATTAAAATAAAAGATCTTATCTCTATGAAGTTATAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTATGAAGTTATAGTAG
12429712 AGTACATCGCAT
131 AGTACATCGCAT
*
12429724 CAGATTGAAGCCATAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
1 CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
* *
12429789 ATCTCCTTGAGATTACAATGGAGCGAATTAAAATAAAGGATCTTATCTCTATGAAGTTATAGTAG
66 ATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTATGAAGTTATAGTAG
*
12429854 AGTAGATCGCAT
131 AGTACATCGCAT
12429866 CAG
1 CAG
12429869 GTCTTATCTC
Statistics
Matches: 272, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
142 272 1.00
ACGTcount: A:0.34, C:0.19, G:0.20, T:0.28
Consensus pattern (142 bp):
CAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCCT
ATCTCCCTGAGATTACAGTGGAGCGAATTAAAATAAAGGATCTTATCTCTATGAAGTTATAGTAG
AGTACATCGCAT
Found at i:12430001 original size:50 final size:50
Alignment explanation
Indices: 12429944--12430169 Score: 168
Period size: 50 Copynumber: 4.5 Consensus size: 50
12429934 GCAGTGGAAC
* * * * *
12429944 AGATTAAAGTCACATCGGTGAATCTTGCTTCCCCAACATTGCAATTCAAA
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCAACATTGCAGTTCAAA
* * * * * * *** *
12429994 AGATTAAAGCTACAACAACGAATCTTACCT-CCCAGGCGA-TCCAGCGGAAC
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCA-AC-ATTGCAGTTCAAA
*** * * * *
12430044 AGATTAAAGCCACATTGGTGAATCTTGCTTCCCCGACAGTGTAGTTCAAA
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCAACATTGCAGTTCAAA
* * *
12430094 AGATTAAAGCCACAACAGCGAATCATGCTTCCCCGACATTGCAGTTAAAA
1 AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCAACATTGCAGTTCAAA
* **
12430144 AGATTAAAGCCATAATGGCGAATCTT
1 AGATTAAAGCCACAACAGCGAATCTT
12430170 ACTTTCCAAA
Statistics
Matches: 129, Mismatches: 43, Indels: 8
0.72 0.24 0.04
Matches are distributed among these distances:
49 5 0.04
50 120 0.93
51 4 0.03
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.23
Consensus pattern (50 bp):
AGATTAAAGCCACAACAGCGAATCTTGCTTCCCCAACATTGCAGTTCAAA
Done.