Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 47 of 170
Found at i:13726667 original size:24 final size:24
Alignment explanation
Indices: 13726640--13726687 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
13726630 GGCGCTCGAA
13726640 TAGGCACGGATAAGTGGGGCTTCG
1 TAGGCACGGATAAGTGGGGCTTCG
13726664 TAGGCACGGATAAGTGGGGCTTCG
1 TAGGCACGGATAAGTGGGGCTTCG
13726688 AGGGTCTCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.21, C:0.17, G:0.42, T:0.21
Consensus pattern (24 bp):
TAGGCACGGATAAGTGGGGCTTCG
Found at i:13727132 original size:34 final size:35
Alignment explanation
Indices: 13727088--13727154 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
13727078 CAGTAAAATG
13727088 TTTTCCGTAAAATAATTT-CTAGAAAATATTTTAC
1 TTTTCCGTAAAATAATTTACTAGAAAATATTTTAC
* *
13727122 TTTTCTGTAAAATGATTTACTAGAAAATATTTT
1 TTTTCCGTAAAATAATTTACTAGAAAATATTTT
13727155 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.53
35 14 0.47
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATAATTTACTAGAAAATATTTTAC
Found at i:13727330 original size:22 final size:24
Alignment explanation
Indices: 13727304--13727355 Score: 58
Period size: 26 Copynumber: 2.2 Consensus size: 24
13727294 GCAATGATTT
13727304 TATAAATAA-A-TCAA-ATT-AAA
1 TATAAATAATATTCAATATTAAAA
13727324 TATATAATAATATTCAATTATTAAAA
1 TATA-AATAATATTCAA-TATTAAAA
13727350 TATAAA
1 TATAAA
13727356 AGCATTGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
20 4 0.15
21 5 0.19
22 1 0.04
23 4 0.15
25 5 0.19
26 7 0.27
ACGTcount: A:0.60, C:0.04, G:0.00, T:0.37
Consensus pattern (24 bp):
TATAAATAATATTCAATATTAAAA
Found at i:13733336 original size:30 final size:32
Alignment explanation
Indices: 13733283--13733342 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
13733273 TATTTTTTTG
*
13733283 TTCATTTTATTCTCCATCTCTCTTTTTGCCGC
1 TTCATTCTATTCTCCATCTCTCTTTTTGCCGC
13733315 TTCATTCTATTCTCCA-C-CTCTTTTTGCC
1 TTCATTCTATTCTCCATCTCTCTTTTTGCC
13733343 ACCCCTCCTC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
30 11 0.41
31 1 0.04
32 15 0.56
ACGTcount: A:0.10, C:0.33, G:0.05, T:0.52
Consensus pattern (32 bp):
TTCATTCTATTCTCCATCTCTCTTTTTGCCGC
Found at i:13734399 original size:35 final size:35
Alignment explanation
Indices: 13734353--13734448 Score: 138
Period size: 35 Copynumber: 2.7 Consensus size: 35
13734343 TTTTGTTGGT
* *
13734353 ATTCTAATTCGCATGTTAAGCATGTCATTATACTA
1 ATTCTAATTCGCATGTTAAGCATGCCACTATACTA
* *
13734388 ATTCTGATTCGCATGTTAAGCATGCCACTATACTG
1 ATTCTAATTCGCATGTTAAGCATGCCACTATACTA
* *
13734423 ATTCTAAATCGCATGTAAAGCATGCC
1 ATTCTAATTCGCATGTTAAGCATGCC
13734449 CACTGAAATT
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 54 1.00
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (35 bp):
ATTCTAATTCGCATGTTAAGCATGCCACTATACTA
Found at i:13738754 original size:8 final size:8
Alignment explanation
Indices: 13738741--13738770 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
13738731 AGTACAGGAA
13738741 AAAATTGC
1 AAAATTGC
*
13738749 AAAATTAC
1 AAAATTGC
13738757 AAAATTGC
1 AAAATTGC
13738765 AAAATT
1 AAAATT
13738771 TTAACTACAG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.57, C:0.10, G:0.07, T:0.27
Consensus pattern (8 bp):
AAAATTGC
Found at i:13741766 original size:35 final size:37
Alignment explanation
Indices: 13741690--13741781 Score: 111
Period size: 35 Copynumber: 2.6 Consensus size: 37
13741680 TGATATTCTA
*
13741690 ATTCTCATGTTAAGCATGCCATTATTACTTATTTTTG
1 ATTCGCATGTTAAGCATGCCATTATTACTTATTTTTG
* *
13741727 -TTCGCATGTTAAGCATGGCGTTA-TA-TTGA-TTTTG
1 ATTCGCATGTTAAGCATGCCATTATTACTT-ATTTTTG
*
13741761 ATTCGCATGTTAAGTATGCCA
1 ATTCGCATGTTAAGCATGCCA
13741782 CTGTACTGAT
Statistics
Matches: 47, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
34 7 0.15
35 20 0.43
36 20 0.43
ACGTcount: A:0.24, C:0.15, G:0.17, T:0.43
Consensus pattern (37 bp):
ATTCGCATGTTAAGCATGCCATTATTACTTATTTTTG
Found at i:13741792 original size:35 final size:35
Alignment explanation
Indices: 13741690--13741792 Score: 109
Period size: 35 Copynumber: 2.9 Consensus size: 35
13741680 TGATATTCTA
* *
13741690 ATTCTCATGTTAAGCATGCCATTATTACTTATTTTTG
1 ATTCGCATGTTAAGCATGCCATTA-TACTGA-TTTTG
* * *
13741727 -TTCGCATGTTAAGCATGGCGTTATATTGATTTTG
1 ATTCGCATGTTAAGCATGCCATTATACTGATTTTG
* * *
13741761 ATTCGCATGTTAAGTATGCCACTGTACTGATT
1 ATTCGCATGTTAAGCATGCCATTATACTGATT
13741793 CTAAATCACA
Statistics
Matches: 54, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
34 5 0.09
35 29 0.54
36 20 0.37
ACGTcount: A:0.23, C:0.16, G:0.17, T:0.44
Consensus pattern (35 bp):
ATTCGCATGTTAAGCATGCCATTATACTGATTTTG
Found at i:13745624 original size:26 final size:27
Alignment explanation
Indices: 13745574--13745630 Score: 82
Period size: 26 Copynumber: 2.1 Consensus size: 27
13745564 ATAGCTAAGA
*
13745574 AATAGCCTTTGTGGCGAACTTTGAAAG
1 AATAGCCTTTGTGGCGAACTCTGAAAG
13745601 AATAGCC-TTGTGGC-AGACTCTGAAAG
1 AATAGCCTTTGTGGCGA-ACTCTGAAAG
13745627 AATA
1 AATA
13745631 AATTTTGTGG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 1 0.04
26 20 0.71
27 7 0.25
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.26
Consensus pattern (27 bp):
AATAGCCTTTGTGGCGAACTCTGAAAG
Found at i:13752237 original size:21 final size:21
Alignment explanation
Indices: 13752196--13752247 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
13752186 GTATCGATCT
* *
13752196 GGTATCGATA-CTTTTCTTAA
1 GGTATCGATATATTTTCCTAA
13752216 GGTATCGATATATTTTCCTAA
1 GGTATCGATATATTTTCCTAA
* *
13752237 GATATCAATAT
1 GGTATCGATAT
13752248 TTCTGCTCCA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 10 0.37
21 17 0.63
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.42
Consensus pattern (21 bp):
GGTATCGATATATTTTCCTAA
Found at i:13758918 original size:18 final size:18
Alignment explanation
Indices: 13758895--13758948 Score: 72
Period size: 18 Copynumber: 2.9 Consensus size: 18
13758885 ATTCCATTCC
*
13758895 ATATCATTTTTCATTTCA
1 ATATCATTTCTCATTTCA
13758913 ATATCATTTCTCATTTCA
1 ATATCATTTCTCATTTCA
*
13758931 ATGTCATTATCTCGATTT
1 ATATCATT-TCTC-ATTT
13758949 TACTATTTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
18 24 0.75
19 4 0.12
20 4 0.12
ACGTcount: A:0.26, C:0.19, G:0.04, T:0.52
Consensus pattern (18 bp):
ATATCATTTCTCATTTCA
Found at i:13761106 original size:158 final size:158
Alignment explanation
Indices: 13760816--13761317 Score: 844
Period size: 158 Copynumber: 3.2 Consensus size: 158
13760806 TCGATCTAGC
* *
13760816 TCTCGCAAAGTGAGAATTCTCAATAGAAATTCTCTTCACGCACTGAAAATAAAGCAGG-AGCAAC
1 TCTCACAAAGTGAGAATTCTCAATAGAAATTCTCTTCAAGCACTGAAAATAAAGC-GGAAGCAAC
* *
13760880 TCGAAATGAAAGAGCAATGAGAGAACTAAAAAGCCACAAGGAAGCAATGCACACCAAGTGTTTGA
65 TCGAAATGAAAGAGCAACGAGAGAACTGAAAAGCCACAAGGAAGCAATGCACACCAAGTGTTTGA
13760945 GTAAATGCTCTCAATATATATTCTTTAAT
130 GTAAATGCTCTCAATATATATTCTTTAAT
* *
13760974 TCTCGCAAAGTGAGAATTCTCAATAGAAATTCTCTTCAAGCACAGAAAATAAAGCGGAAGCAACT
1 TCTCACAAAGTGAGAATTCTCAATAGAAATTCTCTTCAAGCACTGAAAATAAAGCGGAAGCAACT
* * * *
13761039 CGAAATGAAAAAGCAACGAGAGAACTGAAAAGCCATAAGGAAGCAATCCACACCAAGTGTTTAAG
66 CGAAATGAAAGAGCAACGAGAGAACTGAAAAGCCACAAGGAAGCAATGCACACCAAGTGTTTGAG
**
13761104 TAAATATTCTCAATATATATTCTTTAAT
131 TAAATGCTCTCAATATATATTCTTTAAT
13761132 TCTCACAAAGTGAGAATTCTCAATAGAAATTCTCTTCAAGCACTGAAAATAAAGCGGAAGCAACT
1 TCTCACAAAGTGAGAATTCTCAATAGAAATTCTCTTCAAGCACTGAAAATAAAGCGGAAGCAACT
* *
13761197 CGAAATGAAAGAGTAACGAGAGAACTGAAAAGCCACAAGGAAGCAAAGCACACCAAGTGTTTGAG
66 CGAAATGAAAGAGCAACGAGAGAACTGAAAAGCCACAAGGAAGCAATGCACACCAAGTGTTTGAG
* *
13761262 TAAATGCTTTCGATATATATTCTTTAAT
131 TAAATGCTCTCAATATATATTCTTTAAT
13761290 TCTCACAAAGTGAGAATTCTCAATAGAA
1 TCTCACAAAGTGAGAATTCTCAATAGAA
13761318 GAGTTTCCAT
Statistics
Matches: 321, Mismatches: 22, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
157 2 0.01
158 319 0.99
ACGTcount: A:0.42, C:0.18, G:0.17, T:0.23
Consensus pattern (158 bp):
TCTCACAAAGTGAGAATTCTCAATAGAAATTCTCTTCAAGCACTGAAAATAAAGCGGAAGCAACT
CGAAATGAAAGAGCAACGAGAGAACTGAAAAGCCACAAGGAAGCAATGCACACCAAGTGTTTGAG
TAAATGCTCTCAATATATATTCTTTAAT
Found at i:13762715 original size:22 final size:22
Alignment explanation
Indices: 13762690--13762733 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
13762680 TTTTGCTGAT
*
13762690 TCATAGAGCTGATTTGTAGGGA
1 TCATAGAACTGATTTGTAGGGA
*
13762712 TCATAGAATTGATTTGTAGGGA
1 TCATAGAACTGATTTGTAGGGA
13762734 CTTGTTTTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.07, G:0.30, T:0.34
Consensus pattern (22 bp):
TCATAGAACTGATTTGTAGGGA
Found at i:13765940 original size:18 final size:19
Alignment explanation
Indices: 13765907--13765944 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
13765897 AGACTCCAGG
*
13765907 TCTGATTCTTTTCAATCAT
1 TCTGATTCTCTTCAATCAT
13765926 TCTGATT-TCTTCAATCAT
1 TCTGATTCTCTTCAATCAT
13765944 T
1 T
13765945 GCTTGCTTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.21, C:0.21, G:0.05, T:0.53
Consensus pattern (19 bp):
TCTGATTCTCTTCAATCAT
Found at i:13772662 original size:14 final size:14
Alignment explanation
Indices: 13772645--13772684 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
13772635 ATAAATATTA
13772645 TTTATTAAATTAAT
1 TTTATTAAATTAAT
13772659 TTTAATT-AATTAAT
1 TTT-ATTAAATTAAT
13772673 TTT-TTAAATTAA
1 TTTATTAAATTAA
13772685 ATAAATTTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
12 2 0.08
13 6 0.25
14 13 0.54
15 3 0.12
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTATTAAATTAAT
Found at i:13776517 original size:27 final size:27
Alignment explanation
Indices: 13776487--13776664 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
13776477 ATATTGAGCC
* * *
13776487 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
13776514 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
13776541 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
13776569 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
13776596 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
13776623 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
13776650 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
13776665 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:13776580 original size:55 final size:55
Alignment explanation
Indices: 13776487--13776664 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
13776477 ATATTGAGCC
* * *
13776487 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
13776541 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
13776596 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
13776650 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
13776665 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:13776626 original size:82 final size:81
Alignment explanation
Indices: 13776508--13776663 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
13776498 TGCTATACAA
* * *
13776508 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
13776573 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
13776590 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
13776654 CACTTAGTGC
65 CACTTAGTGC
13776664 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:13784590 original size:27 final size:27
Alignment explanation
Indices: 13784560--13784737 Score: 115
Period size: 27 Copynumber: 6.6 Consensus size: 27
13784550 ATATTGAGCC
* * *
13784560 CGCACACTCAGTGCTATACAATCAACT
1 CGCACACTTAGTGCTACACAATCAAAT
* **
13784587 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACACAATCAAAT
* * * *
13784614 CGCACACTTAGTGCTACATAGTTAGACT
1 CGCACACTTAGTGCTACACAATCA-AAT
** *** *
13784642 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACACAATCAAAT
* * **
13784669 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CACAATCAAAT
* * * *
13784696 CGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTACACAATCAAAT
13784723 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
13784738 GTACAATTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
27 100 0.81
28 23 0.19
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACACAATCAAAT
Found at i:13784653 original size:55 final size:55
Alignment explanation
Indices: 13784560--13784737 Score: 204
Period size: 54 Copynumber: 3.3 Consensus size: 55
13784550 ATATTGAGCC
* * *
13784560 CGCACACTCAGTGCTATACA-A-TCAACTCGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTAT-CATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * *
13784614 CGCACACTTAGTGCTA-CATAGTT-AGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTATCATA-TTCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
** * *
13784669 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAAT
1 CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
13784723 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
13784738 GTACAATTTA
Statistics
Matches: 104, Mismatches: 13, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
52 2 0.02
53 1 0.01
54 56 0.54
55 45 0.43
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (55 bp):
CGCACACTTAGTGCTATCATATTCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:13784699 original size:82 final size:81
Alignment explanation
Indices: 13784581--13784736 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
13784571 TGCTATACAA
* * *
13784581 TCAACTCGCACACTTAGTGCCACGTAATCAAATCGCACACTTAGTGCTACATAGTTAGACTCGCA
1 TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAG-TAGAATCGCA
13784646 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
13784663 TCAATTCGCACACTTAGTG-CATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCCA-CATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCA
13784727 CACTTAGTGC
65 CACTTAGTGC
13784737 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 20 0.31
82 45 0.69
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCAACATAGTAGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:13787264 original size:13 final size:13
Alignment explanation
Indices: 13787241--13787276 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
13787231 GATATTTACG
13787241 ATTACACATTAACC
1 ATTA-ACATTAACC
13787255 ATTAACATTAACC
1 ATTAACATTAACC
13787268 ATT-ACATTA
1 ATTAACATTA
13787277 CACATGCATT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 6 0.27
13 12 0.55
14 4 0.18
ACGTcount: A:0.44, C:0.22, G:0.00, T:0.33
Consensus pattern (13 bp):
ATTAACATTAACC
Found at i:13805885 original size:29 final size:29
Alignment explanation
Indices: 13805834--13806185 Score: 206
Period size: 29 Copynumber: 12.1 Consensus size: 29
13805824 GTGTGCTAAA
* **
13805834 CGATGGTTGTAACCGGCCCTTTTCATATT
1 CGATGGTTGAAACCATCCCTTTTCATATT
* * *
13805863 TGATGGTTGAAACCATCCATTTTCATTAAT
1 CGATGGTTGAAACCATCCCTTTTCA-TATT
**
13805893 CGATGGTTGTCACCATCCCTTTTCATAGTT
1 CGATGGTTGAAACCATCCCTTTTCATA-TT
** *
13805923 -GATGGTTGTCACCATCCCTTTTCATAAT
1 CGATGGTTGAAACCATCCCTTTTCATATT
* * * * *
13805951 CGATAGCTGAAGCTATTCCTTTTCATATT
1 CGATGGTTGAAACCATCCCTTTTCATATT
* ** * *
13805980 CGATAGCCGAAGCTATCCCTTTTCATATT
1 CGATGGTTGAAACCATCCCTTTTCATATT
* * * * * *
13806009 TGATAGTCGAAGCTATCCATTTTCATATT
1 CGATGGTTGAAACCATCCCTTTTCATATT
* * *
13806038 CGATGG-TCATCACCATCCCTTTTCATAGT
1 CGATGGTTGA-AACCATCCCTTTTCATATT
** *
13806067 CGATGGTTGTCACCATCCCTTTTCATAAT
1 CGATGGTTGAAACCATCCCTTTTCATATT
* * ** *
13806096 CAATAG-CCAAATCTATCCCTTTTCATATT
1 CGATGGTTGAAA-CCATCCCTTTTCATATT
* * * * *
13806125 CGATAGTCGAAGCTATCCCTTTTCATAAT
1 CGATGGTTGAAACCATCCCTTTTCATATT
* ** * * *
13806154 CGATAGCCGAAGCTATCCCTTATCATATT
1 CGATGGTTGAAACCATCCCTTTTCATATT
13806183 CGA
1 CGA
13806186 AGATCGCCAT
Statistics
Matches: 264, Mismatches: 52, Indels: 14
0.80 0.16 0.04
Matches are distributed among these distances:
28 3 0.01
29 232 0.88
30 29 0.11
ACGTcount: A:0.24, C:0.25, G:0.14, T:0.37
Consensus pattern (29 bp):
CGATGGTTGAAACCATCCCTTTTCATATT
Found at i:13805926 original size:59 final size:58
Alignment explanation
Indices: 13805834--13805954 Score: 170
Period size: 59 Copynumber: 2.1 Consensus size: 58
13805824 GTGTGCTAAA
* *
13805834 CGATGGTTGTAACCGGCCCTTTTCATATTTGATGGTTGAAACCATCCATTTTCATTAAT
1 CGATGGTTGTAACCAGCCCTTTTCATAGTTGATGGTTGAAACCATCCATTTTCA-TAAT
* * ** *
13805893 CGATGGTTGTCACCATCCCTTTTCATAGTTGATGGTTGTCACCATCCCTTTTCATAAT
1 CGATGGTTGTAACCAGCCCTTTTCATAGTTGATGGTTGAAACCATCCATTTTCATAAT
13805951 CGAT
1 CGAT
13805955 AGCTGAAGCT
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
58 8 0.15
59 47 0.85
ACGTcount: A:0.21, C:0.23, G:0.17, T:0.39
Consensus pattern (58 bp):
CGATGGTTGTAACCAGCCCTTTTCATAGTTGATGGTTGAAACCATCCATTTTCATAAT
Found at i:13805998 original size:58 final size:58
Alignment explanation
Indices: 13805936--13806185 Score: 274
Period size: 58 Copynumber: 4.3 Consensus size: 58
13805926 GGTTGTCACC
* * *
13805936 ATCCCTTTTCATAATCGATAG-CTGAAGCTATTCCTTTTCATATTCGATAGCCGAAGCT
1 ATCCCTTTTCATATTCGATAGTC-GAAGCTATCCCTTTTCATAATCGATAGCCGAAGCT
* * * * * *
13805994 ATCCCTTTTCATATTTGATAGTCGAAGCTATCCATTTTCATATTCGATGGTC-ATCA-CC
1 ATCCCTTTTCATATTCGATAGTCGAAGCTATCCCTTTTCATAATCGATAGCCGA--AGCT
* * * * * * * *
13806052 ATCCCTTTTCATAGTCGATGGTTGTCA-CCATCCCTTTTCATAATCAATAGCCAAATCT
1 ATCCCTTTTCATATTCGATAGTCG-AAGCTATCCCTTTTCATAATCGATAGCCGAAGCT
13806110 ATCCCTTTTCATATTCGATAGTCGAAGCTATCCCTTTTCATAATCGATAGCCGAAGCT
1 ATCCCTTTTCATATTCGATAGTCGAAGCTATCCCTTTTCATAATCGATAGCCGAAGCT
*
13806168 ATCCCTTATCATATTCGA
1 ATCCCTTTTCATATTCGA
13806186 AGATCGCCAT
Statistics
Matches: 157, Mismatches: 28, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
57 3 0.02
58 150 0.96
59 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.37
Consensus pattern (58 bp):
ATCCCTTTTCATATTCGATAGTCGAAGCTATCCCTTTTCATAATCGATAGCCGAAGCT
Found at i:13806032 original size:87 final size:87
Alignment explanation
Indices: 13805936--13806183 Score: 252
Period size: 87 Copynumber: 2.9 Consensus size: 87
13805926 GGTTGTCACC
* * *
13805936 ATCCCTTTTCATAATCGATAGCTGAAGCTATTCCTTTTCATATTCGATAGCCGAAGCTATCCCTT
1 ATCCCTTTTCATATTCGATAGCTGAAGCTATCCCTTTTCATAATCGATAGCCGAAGCTATCCCTT
** * *
13806001 TTCATATTTGATAGTCGAAGCT
66 TTCATATTCAATAGCCAAAGCT
* * * * * * ** * *
13806023 ATCCATTTTCATATTCGATGGTCAT-CA-CCATCCCTTTTCATAGTCGATGGTTGTCA-CCATCC
1 ATCCCTTTTCATATTCGATAG-C-TGAAGCTATCCCTTTTCATAATCGATAGCCG-AAGCTATCC
* *
13806085 CTTTTCATAATCAATAGCCAAATCT
63 CTTTTCATATTCAATAGCCAAAGCT
13806110 ATCCCTTTTCATATTCGATAG-TCGAAGCTATCCCTTTTCATAATCGATAGCCGAAGCTATCCCT
1 ATCCCTTTTCATATTCGATAGCT-GAAGCTATCCCTTTTCATAATCGATAGCCGAAGCTATCCCT
*
13806174 TATCATATTC
65 TTTCATATTC
13806184 GAAGATCGCC
Statistics
Matches: 124, Mismatches: 30, Indels: 14
0.74 0.18 0.08
Matches are distributed among these distances:
84 1 0.01
86 2 0.02
87 117 0.94
88 3 0.02
89 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.37
Consensus pattern (87 bp):
ATCCCTTTTCATATTCGATAGCTGAAGCTATCCCTTTTCATAATCGATAGCCGAAGCTATCCCTT
TTCATATTCAATAGCCAAAGCT
Found at i:13806060 original size:116 final size:116
Alignment explanation
Indices: 13805907--13806157 Score: 335
Period size: 116 Copynumber: 2.2 Consensus size: 116
13805897 GGTTGTCACC
** * *
13805907 ATCCCTTTTCATAGTT-GATGGTTGTCACCATCCCTTTTCATAATCGATAGCTG-AAGCTATTCC
1 ATCCCTTTTCATA-TTCGATGGTCATCACCATCCCTTTTCATAATCGATAGCTGTAA-CCATCCC
* * * *
13805970 TTTTCATATTCGATAGCCGAAGCTATCCCTTTTCATATTTGATAGTCGAAGCT
64 TTTTCATAATCAATAGCCAAAGCTATCCCTTTTCATATTCGATAGTCGAAGCT
* * * * *
13806023 ATCCATTTTCATATTCGATGGTCATCACCATCCCTTTTCATAGTCGATGGTTGTCACCATCCCTT
1 ATCCCTTTTCATATTCGATGGTCATCACCATCCCTTTTCATAATCGATAGCTGTAACCATCCCTT
*
13806088 TTCATAATCAATAGCCAAATCTATCCCTTTTCATATTCGATAGTCGAAGCT
66 TTCATAATCAATAGCCAAAGCTATCCCTTTTCATATTCGATAGTCGAAGCT
*
13806139 ATCCCTTTTCATAATCGAT
1 ATCCCTTTTCATATTCGAT
13806158 AGCCGAAGCT
Statistics
Matches: 117, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
115 2 0.02
116 114 0.97
117 1 0.01
ACGTcount: A:0.24, C:0.25, G:0.12, T:0.38
Consensus pattern (116 bp):
ATCCCTTTTCATATTCGATGGTCATCACCATCCCTTTTCATAATCGATAGCTGTAACCATCCCTT
TTCATAATCAATAGCCAAAGCTATCCCTTTTCATATTCGATAGTCGAAGCT
Found at i:13806117 original size:145 final size:145
Alignment explanation
Indices: 13805850--13806185 Score: 492
Period size: 145 Copynumber: 2.3 Consensus size: 145
13805840 TTGTAACCGG
* * * * * **
13805850 CCCTTTTCATATTTGATGGTTGAAACCATCCATTTTCATTAATCGATGGTTGTCACCATCCCTTT
1 CCCTTTTCATATTTGATAGTCGAAGCTATCCATTTTCA-TATTCGATGGTCATCACCATCCCTTT
* * ** *
13805915 TCATAGTTGATGGTTGTCACCATCCCTTTTCATAATCGATAGCTGAAGCTATTCCTTTTCATATT
65 TCATAGTCGATGGTTGTCACCATCCCTTTTCATAATCAATAGCCAAAGCTATCCCTTTTCATATT
13805980 CGATAGCCGAAGCTAT
130 CGATAGCCGAAGCTAT
13805996 CCCTTTTCATATTTGATAGTCGAAGCTATCCATTTTCATATTCGATGGTCATCACCATCCCTTTT
1 CCCTTTTCATATTTGATAGTCGAAGCTATCCATTTTCATATTCGATGGTCATCACCATCCCTTTT
*
13806061 CATAGTCGATGGTTGTCACCATCCCTTTTCATAATCAATAGCCAAATCTATCCCTTTTCATATTC
66 CATAGTCGATGGTTGTCACCATCCCTTTTCATAATCAATAGCCAAAGCTATCCCTTTTCATATTC
*
13806126 GATAGTCGAAGCTAT
131 GATAGCCGAAGCTAT
* * * * *
13806141 CCCTTTTCATAATCGATAGCCGAAGCTATCCCTTATCATATTCGA
1 CCCTTTTCATATTTGATAGTCGAAGCTATCCATTTTCATATTCGA
13806186 AGATCGCCAT
Statistics
Matches: 171, Mismatches: 19, Indels: 1
0.90 0.10 0.01
Matches are distributed among these distances:
145 137 0.80
146 34 0.20
ACGTcount: A:0.24, C:0.25, G:0.13, T:0.38
Consensus pattern (145 bp):
CCCTTTTCATATTTGATAGTCGAAGCTATCCATTTTCATATTCGATGGTCATCACCATCCCTTTT
CATAGTCGATGGTTGTCACCATCCCTTTTCATAATCAATAGCCAAAGCTATCCCTTTTCATATTC
GATAGCCGAAGCTAT
Found at i:13811064 original size:69 final size:68
Alignment explanation
Indices: 13810947--13811166 Score: 223
Period size: 69 Copynumber: 3.2 Consensus size: 68
13810937 GAGGTTTAGA
*
13810947 GTGTGAGACCATAGCTTGGCTATGGTGATCAATAGAGTCTGTCAGGACAG-AAAGCACAAGAATT
1 GTGTAAGACCATAG-TTGGCTATGGTGATCAATAGAGTCTGTCAGGACAGTAAA-CACAAGAATT
13811011 A-AGAG
64 ACA-AG
* * ** *
13811016 GTGTAAGACCATAGTTCGACTATGGTGA-CAAATAGAGTTTGTTGGGACAGTAAACACAGGAATT
1 GTGTAAGACCATAGTT-GGCTATGGTGATC-AATAGAGTCTGTCAGGACAGTAAACACAAGAATT
*
13811080 ACAAT
64 ACAAG
* * ** * *
13811085 GTGTAAGACTATAGTTTGGCTATGGCGATCAATAGAGTC-CACTAGGATAGTAAACACAAGGATT
1 GTGTAAGACCATAG-TTGGCTATGGTGATCAATAGAGTCTGTC-AGGACAGTAAACACAAGAATT
13811149 ACAAG
64 ACAAG
*
13811154 GTGTAAAACCATA
1 GTGTAAGACCATA
13811167 AGTCAACTAT
Statistics
Matches: 123, Mismatches: 21, Indels: 14
0.78 0.13 0.09
Matches are distributed among these distances:
68 3 0.02
69 113 0.92
70 7 0.06
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.24
Consensus pattern (68 bp):
GTGTAAGACCATAGTTGGCTATGGTGATCAATAGAGTCTGTCAGGACAGTAAACACAAGAATTAC
AAG
Found at i:13812417 original size:38 final size:39
Alignment explanation
Indices: 13812284--13812418 Score: 98
Period size: 40 Copynumber: 3.4 Consensus size: 39
13812274 GTTTGGATAA
* * **
13812284 AAAACGCCACTAAAAATCAAGCATTAGCGGCACTTTTCT--
1 AAAACGCCGCTAAAAAT-AAGCATTAGCTGCGGTTTT-TGG
* * *
13812323 AAAGACACCGCTAAAGATGGAGCATTAGCTGCGGTTTTTGG
1 AAA-ACGCCGCTAAAAAT-AAGCATTAGCTGCGGTTTTTGG
* *
13812364 AAAATGCCGCTAAAAATAAGCATTAGC-GAC-GTTTTTTG
1 AAAACGCCGCTAAAAATAAGCATTAGCTG-CGGTTTTTGG
*
13812402 AAAAGCGCCGCAAAAAA
1 AAAA-CGCCGCTAAAAA
13812419 CCTAAGACCG
Statistics
Matches: 76, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
38 12 0.16
39 24 0.32
40 37 0.49
41 3 0.04
ACGTcount: A:0.38, C:0.20, G:0.20, T:0.22
Consensus pattern (39 bp):
AAAACGCCGCTAAAAATAAGCATTAGCTGCGGTTTTTGG
Found at i:13812515 original size:41 final size:41
Alignment explanation
Indices: 13812453--13812692 Score: 292
Period size: 41 Copynumber: 5.9 Consensus size: 41
13812443 TGAGTTTTGG
* *
13812453 GGGCTTTTAGCGACGTTTTTGAAGAAGCGCCGCTAATGATC
1 GGGCCTTTAGCGACGTTTTTGAAGAAGCGCCGCTAATGCTC
* *
13812494 GGGCCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGACGTTTTTGAAGAAGCGCCGCTAATGCTC
*
13812535 GGGCCTTTAGCGATGTTTTTGAA-AATGCGCCGCTAATGCTC
1 GGGCCTTTAGCGACGTTTTTGAAGAA-GCGCCGCTAATGCTC
** * * *
13812576 GTTCCTTTAGTGGCG-TTTTGAAAAAGCGCCGC-AATGCTC
1 GGGCCTTTAGCGACGTTTTTGAAGAAGCGCCGCTAATGCTC
* * * *
13812615 AGGCCTTTAGTGGCGTTGTTGAA-ATAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGACGTTTTTGAAGA-AGCGCCGCTAATGCTC
13812656 GGGCCTTTAGCGACGTTTTTG-AGAAAGCGCCGCTAAT
1 GGGCCTTTAGCGACGTTTTTGAAG-AAGCGCCGCTAAT
13812693 AATAAAAAAA
Statistics
Matches: 172, Mismatches: 20, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
39 20 0.12
40 31 0.18
41 120 0.70
42 1 0.01
ACGTcount: A:0.20, C:0.22, G:0.28, T:0.29
Consensus pattern (41 bp):
GGGCCTTTAGCGACGTTTTTGAAGAAGCGCCGCTAATGCTC
Found at i:13812645 original size:80 final size:80
Alignment explanation
Indices: 13812458--13812692 Score: 292
Period size: 80 Copynumber: 2.9 Consensus size: 80
13812448 TTTGGGGGCT
* * * *
13812458 TTTAGCGACGTTTTTGAAGAAGCGCCGCTAATGATCGGGCCTTTAGCGGCATTTTTGAAGAAGCG
1 TTTAGCGACGTTGTTGAA-AAGCGCCGCTAATGCTCGGGCCTTTAGCGGC-GTTTTGAAAAAGCG
*
13812523 CCGCTAATGCTCGGGCC
64 CCGCTAATGCTCAGGCC
* * ** *
13812540 TTTAGCGATGTTTTTGAAAATGCGCCGCTAATGCTCGTTCCTTTAGTGGCGTTTTGAAAAAGCGC
1 TTTAGCGACGTTGTTGAAAA-GCGCCGCTAATGCTCGGGCCTTTAGCGGCGTTTTGAAAAAGCGC
13812605 CGC-AATGCTCAGGCC
65 CGCTAATGCTCAGGCC
* * * *
13812620 TTTAGTGGCGTTGTTGAAATAGCGCCGCTAATGCTCGGGCCTTTAGCGACGTTTTTGAGAAAGCG
1 TTTAGCGACGTTGTTGAAA-AGCGCCGCTAATGCTCGGGCCTTTAGCGGCG-TTTTGAAAAAGCG
13812685 CCGCTAAT
64 CCGCTAAT
13812693 AATAAAAAAA
Statistics
Matches: 132, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
80 52 0.39
81 35 0.27
82 45 0.34
ACGTcount: A:0.21, C:0.22, G:0.28, T:0.29
Consensus pattern (80 bp):
TTTAGCGACGTTGTTGAAAAGCGCCGCTAATGCTCGGGCCTTTAGCGGCGTTTTGAAAAAGCGCC
GCTAATGCTCAGGCC
Found at i:13813230 original size:21 final size:20
Alignment explanation
Indices: 13813200--13813273 Score: 75
Period size: 21 Copynumber: 3.8 Consensus size: 20
13813190 GGGATTTAAG
*
13813200 GTTTAAGGGTTAGGGGTTAT
1 GTTTAGGGGTTAGGGGTTAT
13813220 GTTTTAGGGGTTAGGGG--A-
1 G-TTTAGGGGTTAGGGGTTAT
**
13813238 -TTTAGGGGTTAAAGGTTAT
1 GTTTAGGGGTTAGGGGTTAT
13813257 GCTTTAGGGGTTAGGGG
1 G-TTTAGGGGTTAGGGG
13813274 GATTTAGGGG
Statistics
Matches: 43, Mismatches: 5, Indels: 11
0.73 0.08 0.19
Matches are distributed among these distances:
16 13 0.30
18 1 0.02
19 1 0.02
20 1 0.02
21 27 0.63
ACGTcount: A:0.19, C:0.01, G:0.43, T:0.36
Consensus pattern (20 bp):
GTTTAGGGGTTAGGGGTTAT
Found at i:13813256 original size:37 final size:38
Alignment explanation
Indices: 13813214--13813286 Score: 130
Period size: 37 Copynumber: 1.9 Consensus size: 38
13813204 AAGGGTTAGG
*
13813214 GGTTATGTTTTAGGGGTTA-GGGGATTTAGGGGTTAAA
1 GGTTATGCTTTAGGGGTTAGGGGGATTTAGGGGTTAAA
13813251 GGTTATGCTTTAGGGGTTAGGGGGATTTAGGGGTTA
1 GGTTATGCTTTAGGGGTTAGGGGGATTTAGGGGTTA
13813287 TGGGGATTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
37 18 0.53
38 16 0.47
ACGTcount: A:0.19, C:0.01, G:0.42, T:0.37
Consensus pattern (38 bp):
GGTTATGCTTTAGGGGTTAGGGGGATTTAGGGGTTAAA
Found at i:13813281 original size:17 final size:16
Alignment explanation
Indices: 13813259--13813314 Score: 69
Period size: 17 Copynumber: 3.4 Consensus size: 16
13813249 AAGGTTATGC
13813259 TTTAGGGGTTAGGGGGA
1 TTTAGGGGTTA-GGGGA
13813276 TTTAGGGGTTATGGGGA
1 TTTAGGGGTTA-GGGGA
**
13813293 TTTAAAGGTTA-GGGA
1 TTTAGGGGTTAGGGGA
13813308 TTTAGGG
1 TTTAGGG
13813315 TTTCAACAGT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
15 9 0.26
17 25 0.74
ACGTcount: A:0.21, C:0.00, G:0.45, T:0.34
Consensus pattern (16 bp):
TTTAGGGGTTAGGGGA
Found at i:13814405 original size:21 final size:21
Alignment explanation
Indices: 13814310--13814406 Score: 72
Period size: 21 Copynumber: 4.4 Consensus size: 21
13814300 GGGGTATGGA
* *
13814310 TTTAGGGTTTGGGATTTAAGG
1 TTTAGGGTTAGGGATTTAGGG
* * *
13814331 TTTAAGGGTTAGGG-GTTATGC
1 TTT-AGGGTTAGGGATTTAGGG
13814352 TTTAAGGGTTAGGGGGATTTAGGG
1 TTT-AGGGTTA--GGGATTTAGGG
*
13814376 GTTAGGGGTTAGGGATTT-GAGG
1 TTTA-GGGTTAGGGATTTAG-GG
13814398 TTTAGGGTT
1 TTTAGGGTT
13814407 TTAACGGTGA
Statistics
Matches: 61, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
21 24 0.39
22 21 0.34
23 4 0.07
24 12 0.20
ACGTcount: A:0.19, C:0.01, G:0.42, T:0.38
Consensus pattern (21 bp):
TTTAGGGTTAGGGATTTAGGG
Found at i:13816564 original size:8 final size:8
Alignment explanation
Indices: 13816551--13816581 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
13816541 CCTCATGAAG
13816551 GCCTTGTT
1 GCCTTGTT
13816559 GCCTTGTT
1 GCCTTGTT
13816567 GCCTTGTT
1 GCCTTGTT
*
13816575 GCATTGT
1 GCCTTGT
13816582 AGGCCCGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.03, C:0.23, G:0.26, T:0.48
Consensus pattern (8 bp):
GCCTTGTT
Found at i:13817363 original size:43 final size:43
Alignment explanation
Indices: 13817297--13817479 Score: 285
Period size: 43 Copynumber: 4.3 Consensus size: 43
13817287 CACCAAACAA
* * *
13817297 TAGCGGCGTTTGTAGAAAAAGCGCCGCGAGAGAACATGACCTT
1 TAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGAACATGACCTT
* * *
13817340 TAGCGGCGTTTGTGGGAATAGCGCCGTTAAAGAACATGACCTT
1 TAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGAACATGACCTT
*
13817383 TAGCGGCGTTTGTAGGAAAACCGCCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGAACATGACCTT
*
13817426 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGAACATGACCTT
*
13817469 TAGTGGCGTTT
1 TAGCGGCGTTT
13817480 ATTTCTATAA
Statistics
Matches: 127, Mismatches: 13, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 127 1.00
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (43 bp):
TAGCGGCGTTTGTAGGAAAAGCGCCGCTAAAGAACATGACCTT
Found at i:13818746 original size:28 final size:28
Alignment explanation
Indices: 13818713--13818802 Score: 92
Period size: 28 Copynumber: 3.1 Consensus size: 28
13818703 GTATCAGTGT
*
13818713 AGTGTGGGCCTTAGCCCATTACAGTAAC
1 AGTGTGGGCCTTAGCCCAATACAGTAAC
* * *
13818741 AGTGTGTGAGTCGTAGCCCAATACAGTAAT
1 AGTGTG-G-GCCTTAGCCCAATACAGTAAC
*
13818771 AGCT-TGGGCCTTAGCCCAATATAGTAATC
1 AG-TGTGGGCCTTAGCCCAATACAGTAA-C
13818800 AGT
1 AGT
13818803 ACAATGCAGT
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
28 24 0.48
29 4 0.08
30 21 0.42
31 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (28 bp):
AGTGTGGGCCTTAGCCCAATACAGTAAC
Found at i:13818929 original size:23 final size:25
Alignment explanation
Indices: 13818908--13818958 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 25
13818898 ACACCAATAT
*
13818908 CGCAGCAAAGCTGCCAGTAATAGTGA
1 CGCAACAAAGCTGCCAGTAATAGT-A
* *
13818934 CGCAACAAAGCTGCCAATAACAGTA
1 CGCAACAAAGCTGCCAGTAATAGTA
13818959 TTTGTGGCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 1 0.05
26 21 0.95
ACGTcount: A:0.39, C:0.25, G:0.22, T:0.14
Consensus pattern (25 bp):
CGCAACAAAGCTGCCAGTAATAGTA
Found at i:13819152 original size:27 final size:27
Alignment explanation
Indices: 13819123--13819407 Score: 315
Period size: 27 Copynumber: 10.6 Consensus size: 27
13819113 CAATTCCTAG
* * *
13819123 GGGTATATCAGTCATTTTACCCTAT-GG
1 GGGTATTTCGGTCATTTTACCCT-TCGA
*
13819150 GGGTATTTCGGTCATTTTACCATTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
** *
13819177 GGGTATTTTAGTCATTTTACCTTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
13819204 GGGTAATTT-GATCATTTTACCCTTCGG
1 GGGT-ATTTCGGTCATTTTACCCTTCGA
** *
13819231 GGGTATTTCAATCATTTTACCCCTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
13819258 GGGTATTTTGGTTATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* ** *
13819285 GTGTATTTTAGTCATTTTACCCTTCAA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* *
13819312 AGGTATTTCGGTCATTTTACCCTTCGG
1 GGGTATTTCGGTCATTTTACCCTTCGA
13819339 GGGTATTTCGGTCATTTTACCCTTCGA
1 GGGTATTTCGGTCATTTTACCCTTCGA
* * *
13819366 GGGTATTTTGGTCATTTTACCCAATAG-
1 GGGTATTTCGGTCATTTTACCC-TTCGA
13819393 GGGTATTTCGGTCAT
1 GGGTATTTCGGTCAT
13819408 ATATCGACCT
Statistics
Matches: 219, Mismatches: 35, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
26 5 0.02
27 208 0.95
28 6 0.03
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.42
Consensus pattern (27 bp):
GGGTATTTCGGTCATTTTACCCTTCGA
Found at i:13825028 original size:27 final size:27
Alignment explanation
Indices: 13824998--13825051 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
13824988 GAATAGGAGA
* * *
13824998 ATTAACATTCTGACCATTTGGATTATC
1 ATTAACACTATGACCATTTAGATTATC
*
13825025 ATTAAGACTATGACCATTTAGATTATC
1 ATTAACACTATGACCATTTAGATTATC
13825052 GTTGAGACCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (27 bp):
ATTAACACTATGACCATTTAGATTATC
Found at i:13826450 original size:32 final size:32
Alignment explanation
Indices: 13826410--13826508 Score: 180
Period size: 32 Copynumber: 3.1 Consensus size: 32
13826400 GTTTTTATTC
13826410 TTTTTTTCAGGATAATTCAAACAGCCCAAGAT
1 TTTTTTTCAGGATAATTCAAACAGCCCAAGAT
13826442 TTTTTTTCAGGATAATTCAAACAGCCCAAGATT
1 TTTTTTTCAGGATAATTCAAACAGCCCAAGA-T
*
13826475 TTTTTTTCAGGATAATTCAAACAACCCAAGAT
1 TTTTTTTCAGGATAATTCAAACAGCCCAAGAT
13826507 TT
1 TT
13826509 ATCTTCTTCT
Statistics
Matches: 65, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
32 34 0.52
33 31 0.48
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.36
Consensus pattern (32 bp):
TTTTTTTCAGGATAATTCAAACAGCCCAAGAT
Found at i:13826478 original size:33 final size:33
Alignment explanation
Indices: 13826410--13826508 Score: 182
Period size: 33 Copynumber: 3.0 Consensus size: 33
13826400 GTTTTTATTC
13826410 TTTTTTTCAGGATAATTCAAACAGCCCAAGA-T
1 TTTTTTTCAGGATAATTCAAACAGCCCAAGATT
13826442 TTTTTTTCAGGATAATTCAAACAGCCCAAGATT
1 TTTTTTTCAGGATAATTCAAACAGCCCAAGATT
*
13826475 TTTTTTTCAGGATAATTCAAACAACCCAAGATT
1 TTTTTTTCAGGATAATTCAAACAGCCCAAGATT
13826508 T
1 T
13826509 ATCTTCTTCT
Statistics
Matches: 65, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
32 31 0.48
33 34 0.52
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.36
Consensus pattern (33 bp):
TTTTTTTCAGGATAATTCAAACAGCCCAAGATT
Found at i:13828168 original size:103 final size:103
Alignment explanation
Indices: 13827989--13828192 Score: 347
Period size: 103 Copynumber: 2.0 Consensus size: 103
13827979 TGGAATTTCT
* * * *
13827989 GTTAAGATTCTACCATCTGATGTTGCTGAGAACAAACAGTGGTGTGCGAAGCTGTGGGCCTTGTG
1 GTTAAGATTCTACCATCCGATGTTGCTGAGAACAAACAGTAGTGTCCGAAGCTGTAGGCCTTGTG
13828054 GAGGGGACACTAGGGTTTTTGAGCATCAAGGATAAACC
66 GAGGGGACACTAGGGTTTTTGAGCATCAAGGATAAACC
*
13828092 GTTAAGATTCTACCATCCGATGTTGCTGAGAGCAAACCA-TAGTGTCCGAAGCTGTAGGCCTTGT
1 GTTAAGATTCTACCATCCGATGTTGCTGAGAACAAA-CAGTAGTGTCCGAAGCTGTAGGCCTTGT
13828156 GGAGGGGACACTAGGGTTTTTGAGCATCAAGGATAAA
65 GGAGGGGACACTAGGGTTTTTGAGCATCAAGGATAAA
13828193 TATGAGACGA
Statistics
Matches: 95, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
103 93 0.98
104 2 0.02
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (103 bp):
GTTAAGATTCTACCATCCGATGTTGCTGAGAACAAACAGTAGTGTCCGAAGCTGTAGGCCTTGTG
GAGGGGACACTAGGGTTTTTGAGCATCAAGGATAAACC
Found at i:13828271 original size:23 final size:23
Alignment explanation
Indices: 13828223--13828271 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
13828213 ATTGGCTTGC
* * *
13828223 TAGAGCAACACCGTGATGATGGT
1 TAGAGCAACACCGCGAAGATGAT
*
13828246 TAGAGCAACACCGCGAAGGTGAT
1 TAGAGCAACACCGCGAAGATGAT
13828269 TAG
1 TAG
13828272 CAGGTTGAGT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.33, C:0.18, G:0.31, T:0.18
Consensus pattern (23 bp):
TAGAGCAACACCGCGAAGATGAT
Found at i:13828531 original size:69 final size:69
Alignment explanation
Indices: 13828398--13828535 Score: 159
Period size: 69 Copynumber: 2.0 Consensus size: 69
13828388 ATAAATAGGG
* * * * *
13828398 GAATTATGAGGTGTAATACCATATTTTAGCTATGGCAACCAATATAGTCCACCGGAACAGTAAAC
1 GAATTACGAGGTGTAAGACCATAGTTTAGCTATGGCAACCAATAGAGTCCACCGGAACAATAAAC
13828463 ACGA
66 ACGA
* * * * *** *
13828467 GAATTACGAGGTGTAAGACCATAGTTTGGCTATGGCGACTAATCGAGTCTTTCGGGACAATAAAC
1 GAATTACGAGGTGTAAGACCATAGTTTAGCTATGGCAACCAATAGAGTCCACCGGAACAATAAAC
13828532 ACGA
66 ACGA
13828536 AGATTATAAA
Statistics
Matches: 56, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
69 56 1.00
ACGTcount: A:0.35, C:0.18, G:0.22, T:0.25
Consensus pattern (69 bp):
GAATTACGAGGTGTAAGACCATAGTTTAGCTATGGCAACCAATAGAGTCCACCGGAACAATAAAC
ACGA
Found at i:13837532 original size:54 final size:53
Alignment explanation
Indices: 13837458--13837606 Score: 210
Period size: 54 Copynumber: 2.8 Consensus size: 53
13837448 ATACCCTAAA
* * *
13837458 ATAGGTAAAATAACCAAAATACCCCCATAGAATAAAATGATCGAAATACCCCC
1 ATAGGTAAAATGACCAAAATACCCCCATAGAGTAAAATGACCGAAATACCCCC
*
13837511 ATAGGATAAAATGACCGAAATACCCCCATA-AGGTAAAATGACCGAAATACCCCC
1 ATAGG-TAAAATGACCAAAATACCCCCATAGA-GTAAAATGACCGAAATACCCCC
* *
13837565 ATAGGGTAAAATGAGCAAAATACCCCCATAGGGTAAAATGAC
1 ATA-GGTAAAATGACCAAAATACCCCCATAGAGTAAAATGAC
13837607 TGTTATACCC
Statistics
Matches: 85, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
53 6 0.07
54 77 0.91
55 2 0.02
ACGTcount: A:0.46, C:0.23, G:0.15, T:0.16
Consensus pattern (53 bp):
ATAGGTAAAATGACCAAAATACCCCCATAGAGTAAAATGACCGAAATACCCCC
Found at i:13837614 original size:27 final size:27
Alignment explanation
Indices: 13837474--13837617 Score: 175
Period size: 27 Copynumber: 5.3 Consensus size: 27
13837464 AAAATAACCA
**
13837474 AAATACCCCCATAGAATAAAATGA-TCG
1 AAATACCCCCATAGGGTAAAATGACT-G
* *
13837501 AAATACCCCCATAGGATAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACTG
* *
13837528 AAATACCCCCATAAGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACTG
*
13837555 AAATACCCCCATAGGGTAAAATGAGC-A
1 AAATACCCCCATAGGGTAAAATGA-CTG
13837582 AAATACCCCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
**
13837609 TTATACCCC
1 AAATACCCC
13837618 TAGGAGATGA
Statistics
Matches: 105, Mismatches: 9, Indels: 6
0.88 0.08 0.05
Matches are distributed among these distances:
26 1 0.01
27 103 0.98
28 1 0.01
ACGTcount: A:0.43, C:0.25, G:0.15, T:0.17
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACTG
Found at i:13837631 original size:54 final size:55
Alignment explanation
Indices: 13837463--13837633 Score: 199
Period size: 54 Copynumber: 3.2 Consensus size: 55
13837453 CTAAAATAGG
* **
13837463 TAAAATAACCAAAATACCCCCATAGAATAAAATGA-TCGAAATACCCCCATA-GGA
1 TAAAATGACCAAAATACCCCCATAGGGTAAAATGACT-GAAATACCCCCATAGGGA
* * *
13837517 TAAAATGACCGAAATACCCCCATAAGGTAAAATGACCGAAATACCCCCATAGGG-
1 TAAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGA
* **
13837571 TAAAATGAGCAAAATACCCCCATAGGGTAAAATGACTGTTATA-CCCC-TAGGAGA
1 TAAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGG-GA
*
13837625 TGAAATGAC
1 TAAAATGAC
13837634 TGTTATGGCC
Statistics
Matches: 99, Mismatches: 14, Indels: 8
0.82 0.12 0.07
Matches are distributed among these distances:
52 4 0.04
53 5 0.05
54 88 0.89
55 2 0.02
ACGTcount: A:0.44, C:0.23, G:0.15, T:0.18
Consensus pattern (55 bp):
TAAAATGACCAAAATACCCCCATAGGGTAAAATGACTGAAATACCCCCATAGGGA
Found at i:13837631 original size:81 final size:81
Alignment explanation
Indices: 13837463--13837633 Score: 207
Period size: 81 Copynumber: 2.1 Consensus size: 81
13837453 CTAAAATAGG
* * *
13837463 TAAAATAACCAAAATACCCCCATAGAATAAAATGATCGAAATACCCCCATAGGATAAAATGACCG
1 TAAAATGACCAAAATACCCCCATAGAATAAAATGAGCAAAATACCCCCATAGGATAAAATGACCG
* *
13837528 AAATACCCCCATAAGG
66 AAATACCCCCAGAAGA
* ** * *
13837544 TAAAATGACCGAAATACCCCCATAGGGTAAAATGAGCAAAATACCCCCATAGGGTAAAATGACTG
1 TAAAATGACCAAAATACCCCCATAGAATAAAATGAGCAAAATACCCCCATAGGATAAAATGACCG
** * *
13837609 TTATACCCCTAGGAGA
66 AAATACCCCCAGAAGA
*
13837625 TGAAATGAC
1 TAAAATGAC
13837634 TGTTATGGCC
Statistics
Matches: 75, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 75 1.00
ACGTcount: A:0.44, C:0.23, G:0.15, T:0.18
Consensus pattern (81 bp):
TAAAATGACCAAAATACCCCCATAGAATAAAATGAGCAAAATACCCCCATAGGATAAAATGACCG
AAATACCCCCAGAAGA
Found at i:13854072 original size:27 final size:27
Alignment explanation
Indices: 13854040--13854107 Score: 118
Period size: 27 Copynumber: 2.5 Consensus size: 27
13854030 ACCCGCCATG
*
13854040 AAGGCACTCCTTTCATGTATTGCCACA
1 AAGGCATTCCTTTCATGTATTGCCACA
13854067 AAGGCATTCCTTTCATGTATTGCCACA
1 AAGGCATTCCTTTCATGTATTGCCACA
*
13854094 AAAGCATTCCTTTC
1 AAGGCATTCCTTTC
13854108 CTAGTGTGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.26, C:0.28, G:0.13, T:0.32
Consensus pattern (27 bp):
AAGGCATTCCTTTCATGTATTGCCACA
Found at i:13855951 original size:50 final size:50
Alignment explanation
Indices: 13855836--13856128 Score: 460
Period size: 50 Copynumber: 5.8 Consensus size: 50
13855826 GATAATAACA
* ** *
13855836 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * **
13855887 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
**
13855937 TGCCAACGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
13855987 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
13856037 TGCCAACGCCATGTCCCAAACATGGTCTTACATGGTACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
13856087 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
13856129 TTACCCAAAT
Statistics
Matches: 226, Mismatches: 16, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
50 193 0.85
51 33 0.15
ACGTcount: A:0.20, C:0.32, G:0.23, T:0.25
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:13861308 original size:14 final size:14
Alignment explanation
Indices: 13861289--13861323 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
13861279 AATCAACCTT
13861289 CACCTCCACCAATC
1 CACCTCCACCAATC
* *
13861303 CACCTCTACCGATC
1 CACCTCCACCAATC
13861317 CACCTCC
1 CACCTCC
13861324 GGTCCTCCAC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.23, C:0.57, G:0.03, T:0.17
Consensus pattern (14 bp):
CACCTCCACCAATC
Found at i:13865911 original size:16 final size:15
Alignment explanation
Indices: 13865868--13865916 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
13865858 TTACTTAGAC
*
13865868 TTTTACTTAT-GTTT
1 TTTTACTTATCTTTT
13865882 TTTTACTATAATCTTTT
1 TTTTACT-T-ATCTTTT
13865899 TTATTACTTATCTTTT
1 TT-TTACTTATCTTTT
13865915 TT
1 TT
13865917 CTATTGTATT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 7 0.23
15 1 0.03
16 11 0.37
17 6 0.20
18 5 0.17
ACGTcount: A:0.18, C:0.10, G:0.02, T:0.69
Consensus pattern (15 bp):
TTTTACTTATCTTTT
Found at i:13865921 original size:18 final size:17
Alignment explanation
Indices: 13865870--13865921 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 17
13865860 ACTTAGACTT
*
13865870 TTACTTATGTTTTTTTA
1 TTACTTATCTTTTTTTA
* *
13865887 CTA-TAATC-TTTTTTA
1 TTACTTATCTTTTTTTA
13865902 TTACTTATCTTTTTTCTA
1 TTACTTATCTTTTTT-TA
13865920 TT
1 TT
13865922 GTATTGTCGA
Statistics
Matches: 27, Mismatches: 5, Indels: 5
0.73 0.14 0.14
Matches are distributed among these distances:
15 9 0.33
16 7 0.26
17 7 0.26
18 4 0.15
ACGTcount: A:0.19, C:0.12, G:0.02, T:0.67
Consensus pattern (17 bp):
TTACTTATCTTTTTTTA
Found at i:13866863 original size:42 final size:42
Alignment explanation
Indices: 13866816--13866917 Score: 145
Period size: 43 Copynumber: 2.4 Consensus size: 42
13866806 ATGTATATAA
13866816 TTAATATATAAAG-AGTAATTTATAAA-TTAAAAAATTATCTCT
1 TTAATATATAAAGTA--AATTTATAAATTTAAAAAATTATCTCT
13866858 TTAATATATAAAGTAAATTTATAAATTTTAAAAAATTATCTCT
1 TTAATATATAAAGTAAATTTATAAA-TTTAAAAAATTATCTCT
* *
13866901 TTAATAAAGAAAGTAAA
1 TTAATATATAAAGTAAA
13866918 AGATATGTAC
Statistics
Matches: 55, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
41 10 0.18
42 13 0.24
43 32 0.58
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.39
Consensus pattern (42 bp):
TTAATATATAAAGTAAATTTATAAATTTAAAAAATTATCTCT
Found at i:13880099 original size:50 final size:53
Alignment explanation
Indices: 13879996--13880133 Score: 147
Period size: 50 Copynumber: 2.6 Consensus size: 53
13879986 GGTGATGAGA
*
13879996 TCCCATGTAAGACCATGTTTGGAACATGACATTGGCATCCTTGAGATCATGAGAGG
1 TCCCATGTAAGACCATGTTTGGAACATGGCATTGGCA-CCTTGAGA--ATGAGAGG
* * * *
13880052 TCTCATGTAAGACTATGTTTGGGACATGGCGTTGGCA-C-TGAG-ATGAGAGG
1 TCCCATGTAAGACCATGTTTGGAACATGGCATTGGCACCTTGAGAATGAGAGG
** * *
13880102 TCCCCCGTAAGACCATGTCTGGCACATGGCAT
1 TCCCATGTAAGACCATGTTTGGAACATGGCAT
13880134 GGACATCGAT
Statistics
Matches: 70, Mismatches: 12, Indels: 6
0.80 0.14 0.07
Matches are distributed among these distances:
50 33 0.47
53 4 0.06
54 1 0.01
56 32 0.46
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (53 bp):
TCCCATGTAAGACCATGTTTGGAACATGGCATTGGCACCTTGAGAATGAGAGG
Found at i:13888787 original size:12 final size:13
Alignment explanation
Indices: 13888770--13888798 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
13888760 TAAAAAACTC
13888770 AAATACCAA-TCA
1 AAATACCAATTCA
13888782 AAATACCAATTCA
1 AAATACCAATTCA
13888795 AAAT
1 AAAT
13888799 GATATTAATC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 9 0.56
13 7 0.44
ACGTcount: A:0.59, C:0.21, G:0.00, T:0.21
Consensus pattern (13 bp):
AAATACCAATTCA
Found at i:13889585 original size:21 final size:21
Alignment explanation
Indices: 13889528--13889586 Score: 82
Period size: 21 Copynumber: 2.8 Consensus size: 21
13889518 ACACCAACGA
* *
13889528 AAGCTCATAAGAGCTAAATAG
1 AAGCTCATAAGAGCTGAACAG
*
13889549 AAGCTCAAAAGAGCTGAACAG
1 AAGCTCATAAGAGCTGAACAG
*
13889570 AAGCTCGTAAGAGCTGA
1 AAGCTCATAAGAGCTGA
13889587 TCCACCCTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.44, C:0.17, G:0.24, T:0.15
Consensus pattern (21 bp):
AAGCTCATAAGAGCTGAACAG
Found at i:13890898 original size:20 final size:20
Alignment explanation
Indices: 13890873--13890910 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
13890863 AATAGAATGG
*
13890873 TAATTTAATGGAAATGTTCA
1 TAATTTAATGAAAATGTTCA
*
13890893 TAATTTTATGAAAATGTT
1 TAATTTAATGAAAATGTT
13890911 GATGCATATG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.03, G:0.13, T:0.45
Consensus pattern (20 bp):
TAATTTAATGAAAATGTTCA
Found at i:13914484 original size:16 final size:16
Alignment explanation
Indices: 13914459--13914527 Score: 111
Period size: 16 Copynumber: 4.3 Consensus size: 16
13914449 TTGGTTAGCT
*
13914459 GTAATAGAATAGAGGC
1 GTAATGGAATAGAGGC
13914475 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
* *
13914491 GTAATGGAATGGATGC
1 GTAATGGAATAGAGGC
13914507 GTAATGGAATAGAGGC
1 GTAATGGAATAGAGGC
13914523 GTAAT
1 GTAAT
13914528 AGGTAATTCT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 48 1.00
ACGTcount: A:0.38, C:0.06, G:0.35, T:0.22
Consensus pattern (16 bp):
GTAATGGAATAGAGGC
Found at i:13914596 original size:44 final size:46
Alignment explanation
Indices: 13914507--13914597 Score: 159
Period size: 46 Copynumber: 2.0 Consensus size: 46
13914497 GAATGGATGC
*
13914507 GTAATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
13914553 GTAATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
13914597 G
1 G
13914598 GAATAGAGGT
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 20 0.45
45 3 0.07
46 21 0.48
ACGTcount: A:0.26, C:0.04, G:0.31, T:0.38
Consensus pattern (46 bp):
GTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTGAAT
Found at i:13914598 original size:39 final size:44
Alignment explanation
Indices: 13914507--13914614 Score: 145
Period size: 46 Copynumber: 2.5 Consensus size: 44
13914497 GAATGGATGC
*
13914507 GTAATGGAATAGAGGCGTAATAGGTAATTCTTTTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTT--AT
13914553 GTAATGGAATAGAGGCGTAAT-GGT-ATTCTTGTGTTTGG-T-T
1 GTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTAT
*
13914593 G-AATGGAATAGAGGTGTAATAG
1 GTAATGGAATAGAGGCGTAATAG
13914615 CATAAGGAAA
Statistics
Matches: 59, Mismatches: 2, Indels: 8
0.86 0.03 0.12
Matches are distributed among these distances:
39 18 0.31
40 3 0.05
43 1 0.02
44 13 0.22
45 3 0.05
46 21 0.36
ACGTcount: A:0.29, C:0.04, G:0.31, T:0.36
Consensus pattern (44 bp):
GTAATGGAATAGAGGCGTAATAGGTAATTCTTGTGTTTGGTTAT
Found at i:13914882 original size:117 final size:117
Alignment explanation
Indices: 13914761--13915212 Score: 739
Period size: 117 Copynumber: 3.9 Consensus size: 117
13914751 TTGTTATAAA
*
13914761 ATATAATTTAATAAAATTTTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAATATAT
1 ATATAATTTAATAAAATTGTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAATATAT
*
13914826 GATACTAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAT
66 AATACTAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAT
13914878 ATATAATTTAATAAAATTGTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAATATAT
1 ATATAATTTAATAAAATTGTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAATATAT
* * *
13914943 AATACTAAAATATAATTTAACATAATTGTTATAAAATATAATTTAATAAAAT
66 AATACTAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAT
13914995 ATATAATTTAATAAAATTGTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAATATAT
1 ATATAATTTAATAAAATTGTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAATATAT
13915060 AATACTAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAATAAT
66 AATACTAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAA-AAT
*
13915113 ATATAATTTAATAAAA---TT-CT---TATTCTTATATGAATTTAC---TAAAA-CATAATATAT
1 ATATAATTTAATAAAATTGTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAATATAT
13915167 AATACTATAAAATATAATTT-AAATAATTATTATTAAATATAATTTA
66 AATAC--TAAAATATAATTTAAAATAATTATTATTAAATATAATTTA
13915213 TAATCTACTT
Statistics
Matches: 323, Mismatches: 9, Indels: 15
0.93 0.03 0.04
Matches are distributed among these distances:
107 15 0.05
108 31 0.10
109 13 0.04
111 19 0.06
114 1 0.00
115 2 0.01
117 223 0.69
118 19 0.06
ACGTcount: A:0.52, C:0.04, G:0.02, T:0.42
Consensus pattern (117 bp):
ATATAATTTAATAAAATTGTTAATAAATATTCTTATATGAATTTACTAATAAAATCATAATATAT
AATACTAAAATATAATTTAAAATAATTATTATTAAATATAATTTAATAAAAT
Found at i:13914901 original size:17 final size:17
Alignment explanation
Indices: 13914861--13914894 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
13914851 TTATTATTAA
13914861 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
13914878 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
13914895 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:13914993 original size:15 final size:15
Alignment explanation
Indices: 13914973--13915011 Score: 60
Period size: 17 Copynumber: 2.5 Consensus size: 15
13914963 CATAATTGTT
13914973 ATAAAATATAATTTA
1 ATAAAATATAATTTA
13914988 ATAAAATATATAATTTA
1 AT-AAA-ATATAATTTA
13915005 ATAAAAT
1 ATAAAAT
13915012 TGTTAATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.18
16 6 0.27
17 12 0.55
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
ATAAAATATAATTTA
Found at i:13915018 original size:17 final size:17
Alignment explanation
Indices: 13914978--13915011 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
13914968 TTGTTATAAA
13914978 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
13914995 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
13915012 TGTTAATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:13915083 original size:20 final size:21
Alignment explanation
Indices: 13915044--13915083 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
13915034 AATTTACTAA
*
13915044 TAAAATCATAATATATAATAC
1 TAAAATCATAATATAAAATAC
*
13915065 TAAAAT-ATAATTTAAAATA
1 TAAAATCATAATATAAAATA
13915084 ATTATTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.60, C:0.05, G:0.00, T:0.35
Consensus pattern (21 bp):
TAAAATCATAATATAAAATAC
Found at i:13915096 original size:26 final size:28
Alignment explanation
Indices: 13915051--13915130 Score: 92
Period size: 28 Copynumber: 2.8 Consensus size: 28
13915041 TAATAAAATC
13915051 ATAATATATAATACTAAAATATAATTTAA-A
1 ATAATATATAAT--T-AAATATAATTTAATA
*
13915081 ATAAT-TATTATTAAATATAATTTAATA
1 ATAATATATAATTAAATATAATTTAATA
* *
13915108 ATAATATATAATTTAATAAAATT
1 ATAATATATAATTAAATATAATT
13915131 CTTATTCTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
26 13 0.30
27 7 0.16
28 14 0.32
29 5 0.11
30 5 0.11
ACGTcount: A:0.56, C:0.01, G:0.00, T:0.42
Consensus pattern (28 bp):
ATAATATATAATTAAATATAATTTAATA
Found at i:13915208 original size:32 final size:32
Alignment explanation
Indices: 13915172--13915235 Score: 74
Period size: 32 Copynumber: 2.0 Consensus size: 32
13915162 TATATAATAC
*
13915172 TATAAAATATAATTTAAATAATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
** ** *
13915204 TATAATTTATAATCTACTTTATTATTATTAAA
1 TATAAAATATAATCTAAATAATTATTATTAAA
13915236 CTGTAATACA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (32 bp):
TATAAAATATAATCTAAATAATTATTATTAAA
Found at i:13919275 original size:28 final size:27
Alignment explanation
Indices: 13919244--13919311 Score: 73
Period size: 28 Copynumber: 2.4 Consensus size: 27
13919234 AATTACTAAT
* * *
13919244 AAAATAATAAATAATTTCCTATGTTTA
1 AAAAAAATAAAAAAATTCCTATGTTTA
*
13919271 AAAAAAATACAAAAAATTCCTATTTTTAA
1 AAAAAAATA-AAAAAATTCCTATGTTT-A
13919300 AATAAAAATAAA
1 AA-AAAAATAAA
13919312 CATGCTATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
27 8 0.24
28 14 0.41
29 5 0.15
30 7 0.21
ACGTcount: A:0.59, C:0.07, G:0.01, T:0.32
Consensus pattern (27 bp):
AAAAAAATAAAAAAATTCCTATGTTTA
Found at i:13924188 original size:28 final size:28
Alignment explanation
Indices: 13924134--13924188 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
13924124 ATAGCTGTGA
*
13924134 GCTGGTGAAGTGCAAGCTATACATGCGT
1 GCTGGTGAAGTGCAAGCTACACATGCGT
* *
13924162 GCTGGTGAAGTGCAAGTTACACGTGCG
1 GCTGGTGAAGTGCAAGCTACACATGCG
13924189 AGCTACGCTC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.24, C:0.18, G:0.35, T:0.24
Consensus pattern (28 bp):
GCTGGTGAAGTGCAAGCTACACATGCGT
Found at i:13925671 original size:31 final size:32
Alignment explanation
Indices: 13925636--13925704 Score: 79
Period size: 33 Copynumber: 2.2 Consensus size: 32
13925626 CCAGCCCGAA
*
13925636 TTTAA-TAAAAATATATTTTTTATTTTTAT-TT
1 TTTAATTAAAAATAT-TTTTTAATTTTTATATT
* *
13925667 TTTAATTTTAAAATATTTTTTAATTTTTTTATT
1 TTTAA-TTAAAAATATTTTTTAATTTTTATATT
13925700 TTTAA
1 TTTAA
13925705 AATTATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
31 5 0.16
32 12 0.38
33 15 0.47
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (32 bp):
TTTAATTAAAAATATTTTTTAATTTTTATATT
Found at i:13925702 original size:27 final size:28
Alignment explanation
Indices: 13925664--13925716 Score: 90
Period size: 27 Copynumber: 1.9 Consensus size: 28
13925654 TTTATTTTTA
13925664 TTTTTTAATTTTAAAA-TATTTTTTAAT
1 TTTTTTAATTTTAAAATTATTTTTTAAT
*
13925691 TTTTTTATTTTTAAAATTATTTTTTA
1 TTTTTTAATTTTAAAATTATTTTTTA
13925717 GTGTTTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 15 0.62
28 9 0.38
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (28 bp):
TTTTTTAATTTTAAAATTATTTTTTAAT
Found at i:13925723 original size:26 final size:25
Alignment explanation
Indices: 13925658--13925725 Score: 82
Period size: 27 Copynumber: 2.6 Consensus size: 25
13925648 ATATTTTTTA
*
13925658 TTTTTATTTTTTAATTTTAAAATAT
1 TTTTTATTTTTTATTTTTAAAATAT
13925683 TTTTTAATTTTTTTATTTTTAAAATTAT
1 TTTTT-A-TTTTTTATTTTTAAAA-TAT
* *
13925711 TTTTTAGTGTTTATT
1 TTTTTATTTTTTATT
13925726 AAAAATGGGT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
25 5 0.14
26 8 0.22
27 16 0.43
28 8 0.22
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (25 bp):
TTTTTATTTTTTATTTTTAAAATAT
Found at i:13934586 original size:39 final size:39
Alignment explanation
Indices: 13934543--13934622 Score: 151
Period size: 39 Copynumber: 2.1 Consensus size: 39
13934533 CTGATACCTG
13934543 AAATTGAATATTAAAATAGTGAAAATAAGAGATCTCGAT
1 AAATTGAATATTAAAATAGTGAAAATAAGAGATCTCGAT
*
13934582 AAATTGGATATTAAAATAGTGAAAATAAGAGATCTCGAT
1 AAATTGAATATTAAAATAGTGAAAATAAGAGATCTCGAT
13934621 AA
1 AA
13934623 GTTATATCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.51, C:0.05, G:0.16, T:0.28
Consensus pattern (39 bp):
AAATTGAATATTAAAATAGTGAAAATAAGAGATCTCGAT
Found at i:13949888 original size:21 final size:21
Alignment explanation
Indices: 13949850--13949889 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
13949840 ATTATACCTA
*
13949850 CTCAAAACATGATTAAACAAG
1 CTCAAAACATGATAAAACAAG
*
13949871 CTCAAAACATGCTAAAACA
1 CTCAAAACATGATAAAACA
13949890 TCCATCCTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.53, C:0.23, G:0.07, T:0.17
Consensus pattern (21 bp):
CTCAAAACATGATAAAACAAG
Found at i:13954768 original size:17 final size:17
Alignment explanation
Indices: 13954746--13954781 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
13954736 AAGATGATGA
13954746 TTGTTCTTAAATAAAAG
1 TTGTTCTTAAATAAAAG
* *
13954763 TTGTTCTTGAATAATAG
1 TTGTTCTTAAATAAAAG
13954780 TT
1 TT
13954782 ATTTAGACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.33, C:0.06, G:0.14, T:0.47
Consensus pattern (17 bp):
TTGTTCTTAAATAAAAG
Found at i:13954934 original size:15 final size:16
Alignment explanation
Indices: 13954914--13954949 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
13954904 TCATTCTAAA
*
13954914 AAATACAA-TTGTTCT
1 AAATACAAGTTGTTCC
13954929 AAATACAAGTTGTTCC
1 AAATACAAGTTGTTCC
13954945 AAATA
1 AAATA
13954950 ATGATTATTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.42
16 11 0.58
ACGTcount: A:0.44, C:0.14, G:0.08, T:0.33
Consensus pattern (16 bp):
AAATACAAGTTGTTCC
Found at i:13956056 original size:8 final size:8
Alignment explanation
Indices: 13956043--13956067 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
13956033 CCTATGACCG
13956043 TTTTAAAA
1 TTTTAAAA
13956051 TTTTAAAA
1 TTTTAAAA
13956059 TTTTAAAA
1 TTTTAAAA
13956067 T
1 T
13956068 GTAATTTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (8 bp):
TTTTAAAA
Found at i:13956988 original size:29 final size:29
Alignment explanation
Indices: 13956935--13956990 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
13956925 ATAGGGACTA
* *
13956935 AATCAAATTAGTCCCTCTATCATTAAATG
1 AATCAAATTAATCCCTATATCATTAAATG
13956964 AATCAAATTAATCCCTATAAT-ATTAAA
1 AATCAAATTAATCCCTAT-ATCATTAAA
13956991 AGGAACCAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 22 0.92
30 2 0.08
ACGTcount: A:0.45, C:0.18, G:0.04, T:0.34
Consensus pattern (29 bp):
AATCAAATTAATCCCTATATCATTAAATG
Found at i:13960918 original size:17 final size:18
Alignment explanation
Indices: 13960882--13960925 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
13960872 AAACGATTTT
13960882 TATTTTATAATAAGATAA
1 TATTTTATAATAAGATAA
13960900 TATTTTATAATAA-ATAA
1 TATTTTATAATAAGATAA
*
13960917 TATCTTATA
1 TATTTTATA
13960926 TAATTTAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
17 12 0.48
18 13 0.52
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (18 bp):
TATTTTATAATAAGATAA
Found at i:13962236 original size:21 final size:21
Alignment explanation
Indices: 13962212--13962252 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
13962202 ACATGCTTAA
13962212 AACATAATAACTTCAATATCC
1 AACATAATAACTTCAATATCC
** *
13962233 AACATGTTAAGTTCAATATC
1 AACATAATAACTTCAATATC
13962253 AATATCCAAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.44, C:0.20, G:0.05, T:0.32
Consensus pattern (21 bp):
AACATAATAACTTCAATATCC
Found at i:13964605 original size:76 final size:76
Alignment explanation
Indices: 13964516--13964699 Score: 300
Period size: 76 Copynumber: 2.4 Consensus size: 76
13964506 GAGCACATTG
*
13964516 AATATGAA-GGGGTTGCTAAGTGCTGATTCCCCGA-CTCATTGGTGGTTGCTAAATGTTGATTCC
1 AATATGAAGGGGGTTGCTAAGTGCTGATTCCCCGATC-CATTGGTGGTTGCTAAATGCTGATTCC
13964579 ACCGTATCTTTA
65 ACCGTATCTTTA
* * *
13964591 AATATAAAGGGGGTTGCTAAGTGCTGATTCCCCTATCCATTGGTGGTTGCTAAGTGCTGATTCCA
1 AATATGAAGGGGGTTGCTAAGTGCTGATTCCCCGATCCATTGGTGGTTGCTAAATGCTGATTCCA
13964656 CCGTATCTTTA
66 CCGTATCTTTA
*
13964667 AATGTGAAGGGGGTTGCTAAGTGCTGATTCCCC
1 AATATGAAGGGGGTTGCTAAGTGCTGATTCCCC
13964700 CAAGGGGTTG
Statistics
Matches: 101, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
75 7 0.07
76 93 0.92
77 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.26, T:0.33
Consensus pattern (76 bp):
AATATGAAGGGGGTTGCTAAGTGCTGATTCCCCGATCCATTGGTGGTTGCTAAATGCTGATTCCA
CCGTATCTTTA
Found at i:13964620 original size:43 final size:41
Alignment explanation
Indices: 13964559--13964697 Score: 150
Period size: 43 Copynumber: 3.5 Consensus size: 41
13964549 ACTCATTGGT
* *
13964559 GGTTGCTAAATGTTGATTCCACCGTATCTTTAAATATAAAGGG
1 GGTTGCTAAGTGCTGATTCCACCGTATCTTTAAAT-T-AAGGG
* *
13964602 GGTTGCTAAGTGCTGATTCC-CC-TATC----CATT--GGT
1 GGTTGCTAAGTGCTGATTCCACCGTATCTTTAAATTAAGGG
13964635 GGTTGCTAAGTGCTGATTCCACCGTATCTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCCACCGTATCTTTAAAT-T-AAGGG
13964678 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
13964698 CCCAAGGGGT
Statistics
Matches: 80, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
33 22 0.28
34 2 0.03
35 4 0.05
36 1 0.01
37 2 0.03
39 2 0.03
40 1 0.01
41 4 0.05
42 2 0.03
43 40 0.50
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (41 bp):
GGTTGCTAAGTGCTGATTCCACCGTATCTTTAAATTAAGGG
Found at i:13964644 original size:33 final size:34
Alignment explanation
Indices: 13964602--13964829 Score: 143
Period size: 33 Copynumber: 6.5 Consensus size: 34
13964592 ATATAAAGGG
13964602 GGTTGCTAAGTGCTGATTCCCC-TATCCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATCCATTGGT
* *
13964635 GGTTGCTAAGTGCTGATTCCACCGTATCTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCGTATC----CAT-T---GGT
*
13964678 GGTTGCTAAGTGCTGATT-CCC----CCA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGTATCCATTGGT
*
13964705 GGTTGCTAAGTGCTGATTCCCCGAAT-CATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATCCATTGGT
* * *
13964738 GGTTGCTAAGTGCTGATTCCACCATATCTTTGAATGTGAAAGG
1 GGTTGCTAAGTGCTGATTCC-CCGTATC----CAT-TG---GT
* *
13964781 GGTTGCTAAGTGCTGATTCCCCGAAT-CACTGGT
1 GGTTGCTAAGTGCTGATTCCCCGTATCCATTGGT
13964814 GGTTGCTAAGTGCTGA
1 GGTTGCTAAGTGCTGA
13964830 ATCCACCGAT
Statistics
Matches: 154, Mismatches: 14, Indels: 54
0.69 0.06 0.24
Matches are distributed among these distances:
27 18 0.12
28 5 0.03
31 2 0.01
32 2 0.01
33 58 0.38
34 6 0.04
35 4 0.03
36 2 0.01
37 2 0.01
39 4 0.03
40 3 0.02
41 2 0.01
42 5 0.03
43 41 0.27
ACGTcount: A:0.20, C:0.20, G:0.28, T:0.32
Consensus pattern (34 bp):
GGTTGCTAAGTGCTGATTCCCCGTATCCATTGGT
Found at i:13964722 original size:103 final size:103
Alignment explanation
Indices: 13964600--13964802 Score: 354
Period size: 103 Copynumber: 2.0 Consensus size: 103
13964590 AAATATAAAG
* *
13964600 GGGGTTGCTAAGTGCTGATTCCCC-TATCCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCT
1 GGGGTTGCTAAGTGCTGATTCCCCGAAT-CATTGGTGGTTGCTAAGTGCTGATTCCACCATATCT
*
13964664 TTAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCCAA
65 TTAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
13964703 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTT
*
13964768 TGAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCC
66 TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCC
13964803 GAATCACTGG
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
103 93 0.98
104 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.28, T:0.32
Consensus pattern (103 bp):
GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTGCTAAGTGCTGATTCCACCATATCTT
TAAATGTGAAAGGGGTTGCTAAGTGCTGATTCCCCCAA
Found at i:13973914 original size:76 final size:76
Alignment explanation
Indices: 13973827--13973998 Score: 292
Period size: 76 Copynumber: 2.3 Consensus size: 76
13973817 TATGAAGGGA
*
13973827 TTGCTAAGTGCTGATTCCCCGA-CTCATTGGTGGTTGCTAAATGTTGATTCCACCGTATCTTTAA
1 TTGCTAAGTGCTGATTCCCCGATC-CATTGGTGGTTGCTAAATGCTGATTCCACCGTATCTTTAA
13973891 ATATAAAGGGGG
65 ATATAAAGGGGG
*
13973903 TTGCTAAGTGCTGATTCCCCGATCCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCTTTAAA
1 TTGCTAAGTGCTGATTCCCCGATCCATTGGTGGTTGCTAAATGCTGATTCCACCGTATCTTTAAA
* *
13973968 TGTGAAGGGGG
66 TATAAAGGGGG
13973979 TTGCTAAGTGCTGATTCCCC
1 TTGCTAAGTGCTGATTCCCC
13973999 CAAGGGGTTG
Statistics
Matches: 91, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
76 90 0.99
77 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.25, T:0.34
Consensus pattern (76 bp):
TTGCTAAGTGCTGATTCCCCGATCCATTGGTGGTTGCTAAATGCTGATTCCACCGTATCTTTAAA
TATAAAGGGGG
Found at i:13973919 original size:43 final size:41
Alignment explanation
Indices: 13973858--13973996 Score: 150
Period size: 43 Copynumber: 3.5 Consensus size: 41
13973848 ACTCATTGGT
* *
13973858 GGTTGCTAAATGTTGATTCCACCGTATCTTTAAATATAAAGGG
1 GGTTGCTAAGTGCTGATTCCACCGTATCTTTAAAT-T-AAGGG
* *
13973901 GGTTGCTAAGTGCTGATTCC-CCG-ATC----CATT--GGT
1 GGTTGCTAAGTGCTGATTCCACCGTATCTTTAAATTAAGGG
13973934 GGTTGCTAAGTGCTGATTCCACCGTATCTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCCACCGTATCTTTAAAT-T-AAGGG
13973977 GGTTGCTAAGTGCTGATTCC
1 GGTTGCTAAGTGCTGATTCC
13973997 CCCAAGGGGT
Statistics
Matches: 80, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
33 22 0.28
34 3 0.04
35 3 0.04
36 1 0.01
37 2 0.03
39 2 0.03
40 1 0.01
41 3 0.04
42 3 0.04
43 40 0.50
ACGTcount: A:0.22, C:0.18, G:0.26, T:0.34
Consensus pattern (41 bp):
GGTTGCTAAGTGCTGATTCCACCGTATCTTTAAATTAAGGG
Found at i:13973943 original size:33 final size:34
Alignment explanation
Indices: 13973901--13974137 Score: 129
Period size: 33 Copynumber: 6.7 Consensus size: 34
13973891 ATATAAAGGG
13973901 GGTTGCTAAGTGCTGATTCCCCG-ATCCATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCCATTGGT
* * *
13973934 GGTTGCTAAGTGCTGATTCCACCGTATCTTTAAATGTGAAGGG
1 GGTTGCTAAGTGCTGATTCC-CCGAATC----CAT-T---GGT
*
13973977 GGTTGCTAAGTGCTGATT-CCC----CCA-AGG-
1 GGTTGCTAAGTGCTGATTCCCCGAATCCATTGGT
13974004 GGTTGCTAAGTGCTGATTCCCCGAAT-CATTGGT
1 GGTTGCTAAGTGCTGATTCCCCGAATCCATTGGT
* *
13974037 GGTTACTAAGTGCTGATTCCACC-ATAT-CTTTGAATGT
1 GGTTGCTAAGTGCTGATTCC-CCGA-ATCCATTG---GT
*
13974074 GAAAGGGATTGCTAAGTGCTGATTCCCCGAAT-CACTGGT
1 -----GG-TTGCTAAGTGCTGATTCCCCGAATCCATTGGT
*
13974113 GGTTGCTAAGTGCTGAATCCACCGA
1 GGTTGCTAAGTGCTGATTCC-CCGA
13974138 TAACGGTTAA
Statistics
Matches: 163, Mismatches: 11, Indels: 59
0.70 0.05 0.25
Matches are distributed among these distances:
27 18 0.11
28 5 0.03
31 2 0.01
32 2 0.01
33 58 0.36
34 17 0.10
35 3 0.02
37 3 0.02
39 4 0.02
40 1 0.01
41 2 0.01
42 10 0.06
43 38 0.23
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.31
Consensus pattern (34 bp):
GGTTGCTAAGTGCTGATTCCCCGAATCCATTGGT
Found at i:13974019 original size:103 final size:103
Alignment explanation
Indices: 13973899--13974101 Score: 345
Period size: 103 Copynumber: 2.0 Consensus size: 103
13973889 AAATATAAAG
* *
13973899 GGGGTTGCTAAGTGCTGATTCCCCG-ATCCATTGGTGGTTGCTAAGTGCTGATTCCACCGTATCT
1 GGGGTTGCTAAGTGCTGATTCCCCGAAT-CATTGGTGGTTACTAAGTGCTGATTCCACCATATCT
* *
13973963 TTAAATGTGAAGGGGGTTGCTAAGTGCTGATTCCCCCAA
65 TTAAATGTGAAAGGGATTGCTAAGTGCTGATTCCCCCAA
13974002 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTACTAAGTGCTGATTCCACCATATCTT
1 GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTACTAAGTGCTGATTCCACCATATCTT
*
13974067 TGAATGTGAAAGGGATTGCTAAGTGCTGATTCCCC
66 TAAATGTGAAAGGGATTGCTAAGTGCTGATTCCCC
13974102 GAATCACTGG
Statistics
Matches: 94, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
103 92 0.98
104 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.32
Consensus pattern (103 bp):
GGGGTTGCTAAGTGCTGATTCCCCGAATCATTGGTGGTTACTAAGTGCTGATTCCACCATATCTT
TAAATGTGAAAGGGATTGCTAAGTGCTGATTCCCCCAA
Found at i:13978285 original size:19 final size:19
Alignment explanation
Indices: 13978261--13978303 Score: 59
Period size: 19 Copynumber: 2.3 Consensus size: 19
13978251 TTTAACAAAG
13978261 CAATCTAAAACAAAATAAT
1 CAATCTAAAACAAAATAAT
* **
13978280 CAATCTGAAATGAAATAAT
1 CAATCTAAAACAAAATAAT
13978299 CAATC
1 CAATC
13978304 AATAGTAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.56, C:0.16, G:0.05, T:0.23
Consensus pattern (19 bp):
CAATCTAAAACAAAATAAT
Found at i:13979965 original size:42 final size:42
Alignment explanation
Indices: 13979906--13979986 Score: 144
Period size: 42 Copynumber: 1.9 Consensus size: 42
13979896 TTAAAAACCA
* *
13979906 AACTCTTTGATTGCATCATTAGAATGAAGATTCCAACTTCCT
1 AACTCTTTGATTACATCAATAGAATGAAGATTCCAACTTCCT
13979948 AACTCTTTGATTACATCAATAGAATGAAGATTCCAACTT
1 AACTCTTTGATTACATCAATAGAATGAAGATTCCAACTT
13979987 TGAAAAGCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 37 1.00
ACGTcount: A:0.35, C:0.20, G:0.11, T:0.35
Consensus pattern (42 bp):
AACTCTTTGATTACATCAATAGAATGAAGATTCCAACTTCCT
Found at i:13983869 original size:11 final size:11
Alignment explanation
Indices: 13983853--13983877 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
13983843 CAGCCACTCA
13983853 TTCTTTTTTTT
1 TTCTTTTTTTT
13983864 TTCTTTTTTTT
1 TTCTTTTTTTT
13983875 TTC
1 TTC
13983878 GGCGTAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (11 bp):
TTCTTTTTTTT
Found at i:13985445 original size:115 final size:115
Alignment explanation
Indices: 13985243--13985471 Score: 458
Period size: 115 Copynumber: 2.0 Consensus size: 115
13985233 GCTAATTTAA
13985243 GTTTAGTTTTCTCTATACAATTTAATGACTACGGAAAATCATTGGTCAATTTGTATAGAAGGTTC
1 GTTTAGTTTTCTCTATACAATTTAATGACTACGGAAAATCATTGGTCAATTTGTATAGAAGGTTC
13985308 TTGTACCATACATTTTTTCCATATCTAGGTCCTCTATTATGATTTCATAT
66 TTGTACCATACATTTTTTCCATATCTAGGTCCTCTATTATGATTTCATAT
13985358 GTTTAGTTTTCTCTATACAATTTAATGACTACGGAAAATCATTGGTCAATTTGTATAGAAGGTTC
1 GTTTAGTTTTCTCTATACAATTTAATGACTACGGAAAATCATTGGTCAATTTGTATAGAAGGTTC
13985423 TTGTACCATACATTTTTTCCATATCTAGGTCCTCTATTATGATTTCATA
66 TTGTACCATACATTTTTTCCATATCTAGGTCCTCTATTATGATTTCATA
13985472 ATTTCTAGTC
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
115 114 1.00
ACGTcount: A:0.28, C:0.16, G:0.13, T:0.43
Consensus pattern (115 bp):
GTTTAGTTTTCTCTATACAATTTAATGACTACGGAAAATCATTGGTCAATTTGTATAGAAGGTTC
TTGTACCATACATTTTTTCCATATCTAGGTCCTCTATTATGATTTCATAT
Found at i:13988603 original size:19 final size:19
Alignment explanation
Indices: 13988581--13988626 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
13988571 TTTCTTCTTC
*
13988581 TTCTTATAATTTCATCATT
1 TTCTTATAATCTCATCATT
*
13988600 TTCTCATAATCTCATCATT
1 TTCTTATAATCTCATCATT
13988619 TTCTTATA
1 TTCTTATA
13988627 TAACATATTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.26, C:0.20, G:0.00, T:0.54
Consensus pattern (19 bp):
TTCTTATAATCTCATCATT
Found at i:13990529 original size:23 final size:23
Alignment explanation
Indices: 13990503--13990549 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
13990493 TTAAAGACTT
*
13990503 AATATTATAGAAATAAATAAATA
1 AATATTATAGAAAAAAATAAATA
* * *
13990526 AATATTGTATAAAAAAATTAATA
1 AATATTATAGAAAAAAATAAATA
13990549 A
1 A
13990550 TAATAATAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (23 bp):
AATATTATAGAAAAAAATAAATA
Found at i:13991689 original size:7 final size:7
Alignment explanation
Indices: 13991679--13991704 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
13991669 AGGGGTTCAA
13991679 GTTTTAG
1 GTTTTAG
13991686 GTTTTAG
1 GTTTTAG
13991693 GTTTTAG
1 GTTTTAG
13991700 GTTTT
1 GTTTT
13991705 GGGCCTGTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.27, T:0.62
Consensus pattern (7 bp):
GTTTTAG
Found at i:14011529 original size:19 final size:18
Alignment explanation
Indices: 14011505--14011540 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
14011495 ATTACACTTA
14011505 AAATTAAACTATAATTATT
1 AAATTAAACTA-AATTATT
*
14011524 AAATTAAATTAAATTAT
1 AAATTAAACTAAATTAT
14011541 AGAATCTAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 6 0.38
19 10 0.62
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (18 bp):
AAATTAAACTAAATTATT
Found at i:14012342 original size:17 final size:17
Alignment explanation
Indices: 14012316--14012430 Score: 59
Period size: 17 Copynumber: 6.1 Consensus size: 17
14012306 ATGTATATTT
* *
14012316 ATTTTTAAATTTTTTTA
1 ATTTTAAAATATTTTTA
14012333 ATTTTAAAATATTTTTAAAA
1 ATTTTAAAATATTTTT---A
** *
14012353 TACTTTTTTATTATTTTTTA
1 -A-TTTTAAAATA-TTTTTA
14012373 ATTTTAAAATATTTTAAAAATA
1 ATTTTAAAATATTTT-----TA
* *
14012395 ATTTTTAAATTTTTTTTA
1 A-TTTTAAAATATTTTTA
14012413 ATTTTAAAATATTTTTA
1 ATTTTAAAATATTTTTA
14012430 A
1 A
14012431 AATACTTTTT
Statistics
Matches: 74, Mismatches: 12, Indels: 24
0.67 0.11 0.22
Matches are distributed among these distances:
17 33 0.45
18 10 0.14
19 1 0.01
20 2 0.03
21 1 0.01
22 10 0.14
23 17 0.23
ACGTcount: A:0.38, C:0.01, G:0.00, T:0.61
Consensus pattern (17 bp):
ATTTTAAAATATTTTTA
Found at i:14012348 original size:11 final size:11
Alignment explanation
Indices: 14012334--14012440 Score: 63
Period size: 11 Copynumber: 10.4 Consensus size: 11
14012324 ATTTTTTTAA
14012334 TTTTAAAATAT
1 TTTTAAAATAT
14012345 TTTTAAAATACT
1 TTTTAAAATA-T
* *
14012357 TTTT-TATTAT
1 TTTTAAAATAT
*
14012367 TTTT----TAA
1 TTTTAAAATAT
14012374 TTTTAAAATAT
1 TTTTAAAATAT
*
14012385 TTTAAAAATAAT
1 TTTTAAAAT-AT
14012397 TTTT-AAAT-T
1 TTTTAAAATAT
* *
14012406 TTTT---TTAA
1 TTTTAAAATAT
14012414 TTTTAAAATAT
1 TTTTAAAATAT
14012425 TTTTAAAATACT
1 TTTTAAAATA-T
14012437 TTTT
1 TTTT
14012441 TTAAATTTTA
Statistics
Matches: 75, Mismatches: 10, Indels: 21
0.71 0.09 0.20
Matches are distributed among these distances:
7 7 0.09
8 4 0.05
9 5 0.07
10 5 0.07
11 39 0.52
12 15 0.20
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:14012371 original size:40 final size:39
Alignment explanation
Indices: 14012325--14012441 Score: 189
Period size: 40 Copynumber: 2.9 Consensus size: 39
14012315 TATTTTTAAA
14012325 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAT
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAT
* * *
14012364 TATTTTTTAATTTTAAAATATTTTAAAAATAATTTTTAAAT
1 T-TTTTTTAATTTTAAAATATTTTTAAAATACTTTTT-TAT
14012405 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTT
1 TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTT
14012442 TAAATTTTAA
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
39 1 0.01
40 66 0.94
41 3 0.04
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.62
Consensus pattern (39 bp):
TTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAT
Found at i:14012469 original size:21 final size:21
Alignment explanation
Indices: 14012425--14012469 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
14012415 TTTAAAATAT
** *
14012425 TTTTAAAATACTTTTTTTAAA
1 TTTTAAAATAAATTTTTGAAA
*
14012446 TTTTAAAATAAATTTTTGATA
1 TTTTAAAATAAATTTTTGAAA
14012467 TTT
1 TTT
14012470 ATTAAAAAAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (21 bp):
TTTTAAAATAAATTTTTGAAA
Found at i:14016133 original size:31 final size:30
Alignment explanation
Indices: 14016097--14016184 Score: 88
Period size: 31 Copynumber: 2.9 Consensus size: 30
14016087 GATCAAATCA
*
14016097 AAATTAAAGTTTCAAGTATACATTTGAACC
1 AAATTAAAGTTTCAAGTATACAATTGAACC
* * * *
14016127 ACAATTAGAGTTTCATGTGTACAATTGCACC
1 A-AATTAAAGTTTCAAGTATACAATTGAACC
*
14016158 AAATTAATAAGTTT-ATGTATACAATTG
1 AAATT-A-AAGTTTCAAGTATACAATTG
14016185 CACATTAAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
30 5 0.10
31 38 0.79
32 5 0.10
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.35
Consensus pattern (30 bp):
AAATTAAAGTTTCAAGTATACAATTGAACC
Found at i:14017178 original size:89 final size:88
Alignment explanation
Indices: 14017023--14017279 Score: 421
Period size: 89 Copynumber: 2.9 Consensus size: 88
14017013 CAATGTTGAA
* *
14017023 ACCCACGTCCCAAAATCAACCTGGAAAAAGGGGTTCTTTTATTGTTAACATCAATAGACCTCAAT
1 ACCCACGTCCCAAAATCAACCTGGAAAAATGGGTTTTTTTATTGTTAACATCAATAGACCTCAAT
14017088 TGTCGGCTTCCACCCCCCTAATTT
66 TGTCGGCTTCC-CCCCCCTAATTT
* *
14017112 ACCCACGTCCCAAAATCAACTTGGAAAAATGGGTTTTTTTATTGTTAACATCAATAGACCTTAAT
1 ACCCACGTCCCAAAATCAACCTGGAAAAATGGGTTTTTTTATTGTTAACATCAATAGACCTCAAT
14017177 TGTCGGCTT--CCCCCCTAATTT
66 TGTCGGCTTCCCCCCCCTAATTT
* *
14017198 ACCCACGTCCCAAAATCAACCTGGAAAAATGAG-TTTTTTGTTGTTAACATCAATAGACCTCAAT
1 ACCCACGTCCCAAAATCAACCTGGAAAAATGGGTTTTTTTATTGTTAACATCAATAGACCTCAAT
14017262 TGTCGGCTTCCCCTCCCC
66 TGTCGGCTTCCCC-CCCC
14017280 CCCCCCCTAA
Statistics
Matches: 157, Mismatches: 8, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
85 38 0.24
86 43 0.27
87 2 0.01
88 4 0.03
89 70 0.45
ACGTcount: A:0.29, C:0.28, G:0.13, T:0.30
Consensus pattern (88 bp):
ACCCACGTCCCAAAATCAACCTGGAAAAATGGGTTTTTTTATTGTTAACATCAATAGACCTCAAT
TGTCGGCTTCCCCCCCCTAATTT
Found at i:14018601 original size:49 final size:49
Alignment explanation
Indices: 14018524--14018620 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 49
14018514 TTATGCTATG
* *
14018524 CATTTCTAAACTTGGTATTCCACTGTCTACACTCTTATCACTATTTATA
1 CATTGCTAAACTTAGTATTCCACTGTCTACACTCTTATCACTATTTATA
*
14018573 CATTGCTAAACTTAGTCTTCCACTGTCTACACTCTTATCACTATTTAT
1 CATTGCTAAACTTAGTATTCCACTGTCTACACTCTTATCACTATTTAT
14018621 CCCTTCTAGA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.42
Consensus pattern (49 bp):
CATTGCTAAACTTAGTATTCCACTGTCTACACTCTTATCACTATTTATA
Found at i:14019953 original size:16 final size:16
Alignment explanation
Indices: 14019932--14019996 Score: 52
Period size: 16 Copynumber: 4.4 Consensus size: 16
14019922 ATCTCATAAT
14019932 CATTTCTCATATTTGC
1 CATTTCTCATATTTGC
* *
14019948 CATTTC-AATATTTTC
1 CATTTCTCATATTTGC
14019963 TCA--TCTCATA-TT--
1 -CATTTCTCATATTTGC
*
14019975 CATTTCTCATCTTTGC
1 CATTTCTCATATTTGC
14019991 CATTTC
1 CATTTC
14019997 AATATCAATC
Statistics
Matches: 38, Mismatches: 4, Indels: 14
0.68 0.07 0.25
Matches are distributed among these distances:
11 2 0.05
13 6 0.16
14 6 0.16
15 10 0.26
16 14 0.37
ACGTcount: A:0.20, C:0.26, G:0.03, T:0.51
Consensus pattern (16 bp):
CATTTCTCATATTTGC
Found at i:14019966 original size:43 final size:43
Alignment explanation
Indices: 14019916--14020001 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
14019906 TCATATCTCA
14019916 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
* *
14019959 TTTCTCATCTCATATTCATTTCTCATCTTTGCCATTTCAATAT
1 TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
14020002 CAATCACATA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.23, C:0.24, G:0.02, T:0.50
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTTCTCATATTTGCCATTTCAATAT
Found at i:14021196 original size:17 final size:18
Alignment explanation
Indices: 14021170--14021203 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14021160 GTCTCCACTT
*
14021170 TCTTTTATTTT-ATTATA
1 TCTTTCATTTTAATTATA
14021187 TCTTTCATTTTAATTAT
1 TCTTTCATTTTAATTAT
14021204 TATTATAATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.24, C:0.09, G:0.00, T:0.68
Consensus pattern (18 bp):
TCTTTCATTTTAATTATA
Found at i:14021858 original size:20 final size:22
Alignment explanation
Indices: 14021823--14021864 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 22
14021813 ATACTGGATA
14021823 CTCAAGAAATTTTTCTCAAAAT
1 CTCAAGAAATTTTTCTCAAAAT
*
14021845 CTCAA-AAA-TTTTCTTAAAAT
1 CTCAAGAAATTTTTCTCAAAAT
14021865 TAAGGGACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
21 3 0.16
22 5 0.26
ACGTcount: A:0.43, C:0.17, G:0.02, T:0.38
Consensus pattern (22 bp):
CTCAAGAAATTTTTCTCAAAAT
Found at i:14022906 original size:21 final size:21
Alignment explanation
Indices: 14022838--14022907 Score: 68
Period size: 21 Copynumber: 3.3 Consensus size: 21
14022828 AAGCTTAAAG
* *
14022838 GCTGCACAGAAGCACATAAGT
1 GCTGAACAGAAGCACATAAGA
* * * *
14022859 GCTAAACAGAAACCCATAAGG
1 GCTGAACAGAAGCACATAAGA
* *
14022880 GTTGAACAGAAGCTCATAAGA
1 GCTGAACAGAAGCACATAAGA
14022901 GCTGAAC
1 GCTGAAC
14022908 GGAAACCCAG
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 38 1.00
ACGTcount: A:0.41, C:0.21, G:0.23, T:0.14
Consensus pattern (21 bp):
GCTGAACAGAAGCACATAAGA
Found at i:14022913 original size:42 final size:42
Alignment explanation
Indices: 14022843--14022981 Score: 163
Period size: 42 Copynumber: 3.3 Consensus size: 42
14022833 TAAAGGCTGC
* * * *
14022843 ACAGAAGCACATAAGTGCTAAACAGAAACCCATAAGGGTTGA
1 ACAGAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTAA
* *
14022885 ACAGAAGCTCATAAGAGCTGAACGGAAACCCAGAAGGGTTAA
1 ACAGAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTAA
* * *
14022927 ACTGAAGCTCGA-AAGAGCTGAACTGAAACCCATTAGGGTTAA
1 ACAGAAGCTC-ATAAGAGCTGAACAGAAACCCATAAGGGTTAA
* *
14022969 ACTGAAACTCATA
1 ACAGAAGCTCATA
14022982 TGAGTTAACT
Statistics
Matches: 84, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
41 1 0.01
42 82 0.98
43 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.22, T:0.16
Consensus pattern (42 bp):
ACAGAAGCTCATAAGAGCTGAACAGAAACCCATAAGGGTTAA
Found at i:14022988 original size:21 final size:20
Alignment explanation
Indices: 14022947--14023005 Score: 57
Period size: 20 Copynumber: 2.9 Consensus size: 20
14022937 GAAAGAGCTG
* *
14022947 AACTGAAACCCATTAGGGTT
1 AACTGAAACTCATTAGAGTT
14022967 AAACTGAAACTCA-TATGAGTT
1 -AACTGAAACTCATTA-GAGTT
* *
14022988 AACTGAAGCTCATGAGAG
1 AACTGAAACTCATTAGAG
14023006 CTAAACGGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
20 16 0.50
21 16 0.50
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (20 bp):
AACTGAAACTCATTAGAGTT
Found at i:14028910 original size:17 final size:17
Alignment explanation
Indices: 14028855--14028903 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
14028845 ATCCTTATTG
14028855 GTTTATTTATTTTAGTT
1 GTTTATTTATTTTAGTT
* **
14028872 GTTTGTTTATTTTTCTT
1 GTTTATTTATTTTAGTT
14028889 GTTTATTTATTTTAG
1 GTTTATTTATTTTAG
14028904 ATATTTAATT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.14, C:0.02, G:0.12, T:0.71
Consensus pattern (17 bp):
GTTTATTTATTTTAGTT
Found at i:14035665 original size:165 final size:165
Alignment explanation
Indices: 14035393--14035720 Score: 557
Period size: 165 Copynumber: 2.0 Consensus size: 165
14035383 TAGTTCATCA
* * *
14035393 TCGGGAAGTGAACGAGCATCACAGAATCGTTCCCACTTGAGAGCATGGATTATCTTTCTAATTAG
1 TCGGGAAGTGAACGAGCATCACAGAATCATTCCCACTCGAAAGCATGGATTATCTTTCTAATTAG
* *
14035458 CAAAGGGAAAACCATCACATCATTGCTCTTTAGGTTAAAACCTTTTTCCGGCATCATAAGTTGAT
66 CAAAGGGAAAACCATCACATCATAGCTCTTTAGGTTAAAACCTTTTTACGGCATCATAAGTTGAT
14035523 GCTTGAAGATTGAATCAAATCGCTCTTTCACTTTT
131 GCTTGAAGATTGAATCAAATCGCTCTTTCACTTTT
*
14035558 TCGGGAAGTGAACGAGCATCACAGAATCATTCCCACTCGAAAGCATTGATTATCTTTCTAATTAG
1 TCGGGAAGTGAACGAGCATCACAGAATCATTCCCACTCGAAAGCATGGATTATCTTTCTAATTAG
* * * *
14035623 CATAGGGACAACCATCACATCATAGCTCTTTAGGTTAAAACCTTTTTACGGCATCATAGGTTTAT
66 CAAAGGGAAAACCATCACATCATAGCTCTTTAGGTTAAAACCTTTTTACGGCATCATAAGTTGAT
*
14035688 GCTTGAAGATTGAATCAAATCGTTCTTTCACTT
131 GCTTGAAGATTGAATCAAATCGCTCTTTCACTT
14035721 CTTCATCAAT
Statistics
Matches: 152, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
165 152 1.00
ACGTcount: A:0.30, C:0.21, G:0.17, T:0.32
Consensus pattern (165 bp):
TCGGGAAGTGAACGAGCATCACAGAATCATTCCCACTCGAAAGCATGGATTATCTTTCTAATTAG
CAAAGGGAAAACCATCACATCATAGCTCTTTAGGTTAAAACCTTTTTACGGCATCATAAGTTGAT
GCTTGAAGATTGAATCAAATCGCTCTTTCACTTTT
Found at i:14038641 original size:168 final size:168
Alignment explanation
Indices: 14038356--14038858 Score: 898
Period size: 168 Copynumber: 3.0 Consensus size: 168
14038346 AACATGTTTT
* *
14038356 TTGAAATTGAACATTGTATCTTTCTCTAACAACAAACACAACGGCATAGAAATTTTTGAGAAATC
1 TTGAAATTGAACATTGTATCTTTCTCTAACAACAAACACAGCGGCTTAGAAATTTTTGAGAAATC
* * * *
14038421 CTTAATAAACCTTCGGTAAAAACCGGCATGGCCTAAGAAACTTCTGACTCCTTTCACATTCATTG
66 CTTGATAAACCTTCAGTAAAAATCGGCATGGCCTAAGAAACTTCTAACTCCTTTCACATTCATTG
14038486 GGGCCGGTAATCTTTCAATTACGTCCACCTTTTCTTTG
131 GGGCCGGTAATCTTTCAATTACGTCCACCTTTTCTTTG
14038524 TTGAAATTGAACATTGTATCTTTCTCTAACAACAAACACAGCGGCTTAGAAATTTTTGAGAAATC
1 TTGAAATTGAACATTGTATCTTTCTCTAACAACAAACACAGCGGCTTAGAAATTTTTGAGAAATC
14038589 CTTGATAAACCTTCAGTAAAAATCGGCATGGCCTAAGAAACTTCTAACTCCTTTCACATTCATTG
66 CTTGATAAACCTTCAGTAAAAATCGGCATGGCCTAAGAAACTTCTAACTCCTTTCACATTCATTG
*
14038654 GGGCCGGTAATCTTTCAATTACGTCCACATTTTCTTTG
131 GGGCCGGTAATCTTTCAATTACGTCCACCTTTTCTTTG
14038692 TTGAAATTGAACATTGTATCTTTCTCTAACAACAAACACAGCGGCTTAGAAATTTTTGAGAAATC
1 TTGAAATTGAACATTGTATCTTTCTCTAACAACAAACACAGCGGCTTAGAAATTTTTGAGAAATC
* *
14038757 CTTGATAAACCTTCAGTAAAAATCGGCATGGCCTAAGAAACTTCTAACTCCTTTCACAGTAATTG
66 CTTGATAAACCTTCAGTAAAAATCGGCATGGCCTAAGAAACTTCTAACTCCTTTCACATTCATTG
* * *
14038822 GGGCTGGTAATCTTTCAATTACATCCACCTTTACTTT
131 GGGCCGGTAATCTTTCAATTACGTCCACCTTTTCTTT
14038859 ATGGACTTCA
Statistics
Matches: 322, Mismatches: 13, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
168 322 1.00
ACGTcount: A:0.31, C:0.22, G:0.14, T:0.33
Consensus pattern (168 bp):
TTGAAATTGAACATTGTATCTTTCTCTAACAACAAACACAGCGGCTTAGAAATTTTTGAGAAATC
CTTGATAAACCTTCAGTAAAAATCGGCATGGCCTAAGAAACTTCTAACTCCTTTCACATTCATTG
GGGCCGGTAATCTTTCAATTACGTCCACCTTTTCTTTG
Found at i:14044428 original size:20 final size:23
Alignment explanation
Indices: 14044405--14044448 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
14044395 TTTCAGTTTT
14044405 AAACATTC-A-AAT-TAAGAATA
1 AAACATTCAATAATCTAAGAATA
14044425 AAACATTCAATAATCTAAGAATA
1 AAACATTCAATAATCTAAGAATA
14044448 A
1 A
14044449 CATGATTTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 8 0.38
21 1 0.05
22 3 0.14
23 9 0.43
ACGTcount: A:0.59, C:0.11, G:0.05, T:0.25
Consensus pattern (23 bp):
AAACATTCAATAATCTAAGAATA
Found at i:14045280 original size:7 final size:7
Alignment explanation
Indices: 14045270--14045307 Score: 58
Period size: 7 Copynumber: 5.4 Consensus size: 7
14045260 TATTTGATAG
14045270 TAAACCC
1 TAAACCC
14045277 TAAACCC
1 TAAACCC
**
14045284 TAAACTG
1 TAAACCC
14045291 TAAACCC
1 TAAACCC
14045298 TAAACCC
1 TAAACCC
14045305 TAA
1 TAA
14045308 TAACCAACTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.45, C:0.34, G:0.03, T:0.18
Consensus pattern (7 bp):
TAAACCC
Found at i:14049095 original size:143 final size:143
Alignment explanation
Indices: 14048836--14049674 Score: 1123
Period size: 143 Copynumber: 5.9 Consensus size: 143
14048826 GAAGATATTT
* * *
14048836 TCTTCCTGAAGTTGTAGTGGAGCA-AGTTGAAGCCACCAGCCTTATCTCACTGAAGTTGCAGTGG
1 TCTTCCTGAAGTTGCAGTGGAGCAGA-TTGAAGCCACCAGCCTTATCTCCCTAAAGTTGCAGTGG
* * *
14048900 AGCAGACTGAAGATAACGAATCTTATTTCCTTCA-CGTTGCAGTGGAACAGATTAAAGTTACAAA
65 AGCAGACTGAAGACAACGAATCTTATTTCCCT-AGCGTTGCAGTGGAACAGATTAAAGCTACAAA
*
14048964 TTACGGTGGATCTTA
129 TTATGGTGGATCTTA
* * * *
14048979 TCTTCCTGAAGTTGCAGTGGAGCAGATTAAAGCCACCAACCTTATCTCCCTGAAGTTGCAGCGGA
1 TCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGCAGTGGA
* * ** * *
14049044 GCAGACTGAAGATAGCGAATCTTATTTCCCTAGCGTAACAGTGGAAGAGATTAAAGCTATAAATT
66 GCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCTACAAATT
*
14049109 ACGGTGGATCTTA
131 ATGGTGGATCTTA
* * * * *
14049122 TCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCATTATCTCTCTAAAGTTGCTGCGAA
1 TCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGCAGTGGA
* * * *
14049187 GCAAACTGAAGACAGCGAATCTAATTTCCCTAGCGTTGTAGTGGAACA-ATTTAAAGCTACAAAT
66 GCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGA-TTAAAGCTACAAAT
14049251 TATGGTGGATCTTA
130 TATGGTGGATCTTA
* * * *
14049265 TCTTTCTGAAGTTGTAGTGGAGCAAATTGAAGCCACCAGACTTATCTCCCTAAAGTTGCAGTGGA
1 TCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGCAGTGGA
* *
14049330 GCAGACTGAAGACAACGAATCTTATCTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATT
66 GCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCTACAAATT
*
14049395 ATGGCGGATCTTA
131 ATGGTGGATCTTA
* * * * * *
14049408 TCTTTCTGAAGTTGCAGTGGAGTAGATTGATGTCACCAGCCTTATCTCCCTGAAGTTACAGTGGA
1 TCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGCAGTGGA
* * * *
14049473 GCAGACTGAAGACAACGAATATTATTTCCCTGGCATTGTAGTGGAACAGATTAAAGCTAC-AATT
66 GCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCTACAAATT
*
14049537 ATGGTAGATCTTA
131 ATGGTGGATCTTA
* * *
14049550 CCTTCCTGAAGTTGTAGTGGAGCAAATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGCAGTGGA
1 TCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGCAGTGGA
* * * * * *
14049615 GCAAACTGAAG--AGCGAATCTTATTTCCCTAACATTACAGTGGAACATATTAAAGCTACAA
66 GCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCTACAA
14049675 TTTGCAAACC
Statistics
Matches: 616, Mismatches: 75, Indels: 12
0.88 0.11 0.02
Matches are distributed among these distances:
140 40 0.06
141 1 0.00
142 83 0.13
143 490 0.80
144 2 0.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28
Consensus pattern (143 bp):
TCTTCCTGAAGTTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCCTAAAGTTGCAGTGGA
GCAGACTGAAGACAACGAATCTTATTTCCCTAGCGTTGCAGTGGAACAGATTAAAGCTACAAATT
ATGGTGGATCTTA
Done.