Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 48 of 170
Found at i:14049368 original size:45 final size:45
Alignment explanation
Indices: 14049259--14049504 Score: 147
Period size: 44 Copynumber: 5.3 Consensus size: 45
14049249 ATTATGGTGG
** * * * * *
14049259 ATCTTATCTTTCTGAAGTTGTAGTGGAGCAAATTGAAG-CCACCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAACGA
*
14049303 GA-CTTATCTCCCTAAAGTTGCAGTGGAGCAGACTGAAGACAACGA
1 -ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAACGA
** * * * *
14049348 ATCTTATCTCCCTGGCGTTGCAGTGGAACAGATTAAAGCTACAAATTATGGCGG
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAG--AC--A--A---CGA
** * * * * *
14049402 ATCTTATCTTTCTGAAGTTGCAGTGGAGTAGATTGATGTC-ACCA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAACGA
** *
14049446 GCCTTATCTCCCTGAAGTTACAGTGGAGCAGACTGAAGACAACGA
1 ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAACGA
* *
14049491 ATATTATTTCCCTG
1 ATCTTATCTCCCTG
14049505 GCATTGTAGT
Statistics
Matches: 149, Mismatches: 40, Indels: 24
0.70 0.19 0.11
Matches are distributed among these distances:
44 63 0.42
45 48 0.32
47 3 0.02
49 1 0.01
51 1 0.01
52 1 0.01
54 32 0.21
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.28
Consensus pattern (45 bp):
ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAACGA
Found at i:14051341 original size:68 final size:68
Alignment explanation
Indices: 14051259--14051422 Score: 186
Period size: 68 Copynumber: 2.4 Consensus size: 68
14051249 TTTTTTTACT
* * *
14051259 TTTATTTATCATTCTTTTACTTTTAAAATATTTAAA-TTAATATTATGAACATTTACTTTATCTA
1 TTTATTTATTATTCTTTTACTTTTAAAATACTTAAATTTAATAATATGAACATTTACTTTATCTA
14051323 TTTA
66 -TTA
* * * ** **
14051327 TTTATTTATTATTCTTTTACTTTTCAAATGCTTAAATTTAATAATGTTTACATTTGTTTTATCTA
1 TTTATTTATTATTCTTTTACTTTTAAAATACTTAAATTTAATAATATGAACATTTACTTTATCTA
14051392 TTA
66 TTA
* * *
14051395 TTCACTTATTTATTCTTTTACTTCTAAA
1 TTTATTTA-TTATTCTTTTACTTTTAAA
14051423 GAAATTTTAA
Statistics
Matches: 80, Mismatches: 14, Indels: 3
0.82 0.14 0.03
Matches are distributed among these distances:
68 41 0.51
69 39 0.49
ACGTcount: A:0.30, C:0.10, G:0.02, T:0.57
Consensus pattern (68 bp):
TTTATTTATTATTCTTTTACTTTTAAAATACTTAAATTTAATAATATGAACATTTACTTTATCTA
TTA
Found at i:14051408 original size:69 final size:68
Alignment explanation
Indices: 14051264--14051422 Score: 176
Period size: 69 Copynumber: 2.3 Consensus size: 68
14051254 TTACTTTTAT
* * *
14051264 TTATCATTCTTTTACTTTTAAAATATTTAAATTAATATTATGAACATTTACTTTATCTATTTATT
1 TTATTATTCTTTTACTTTTAAAATACTTAAATTAATAATATGAACATTTACTTTATCTATTTATT
* *
14051329 TAT
66 CAC
* * * ** **
14051332 TTATTATTCTTTTACTTTTCAAATGCTTAAATTTAATAATGTTTACATTTGTTTTATCTA-TTAT
1 TTATTATTCTTTTACTTTTAAAATACTTAAA-TTAATAATATGAACATTTACTTTATCTATTTAT
14051396 TCAC
65 TCAC
*
14051400 TTATTTATTCTTTTACTTCTAAA
1 TTA-TTATTCTTTTACTTTTAAA
14051423 GAAATTTTAA
Statistics
Matches: 75, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
68 36 0.48
69 39 0.52
ACGTcount: A:0.30, C:0.11, G:0.03, T:0.57
Consensus pattern (68 bp):
TTATTATTCTTTTACTTTTAAAATACTTAAATTAATAATATGAACATTTACTTTATCTATTTATT
CAC
Found at i:14054420 original size:19 final size:19
Alignment explanation
Indices: 14054394--14054485 Score: 139
Period size: 19 Copynumber: 4.8 Consensus size: 19
14054384 AATCATATAT
14054394 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* *
14054413 TTTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
*
14054432 CCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
14054451 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
*
14054470 TCTAAAATTGCATATC
1 TCTAAGATTGCATATC
14054486 CTTGAAGATT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 64 1.00
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:14054442 original size:38 final size:38
Alignment explanation
Indices: 14054395--14054485 Score: 155
Period size: 38 Copynumber: 2.4 Consensus size: 38
14054385 ATCATATATT
*
14054395 CTAAGATTGCATATCATATTTAAGATTACATATCATAC
1 CTAAGATTGCATATCATATCTAAGATTACATATCATAC
*
14054433 CTAAGATTGCATATCATATCTAAGATTACATATCATAT
1 CTAAGATTGCATATCATATCTAAGATTACATATCATAC
*
14054471 CTAAAATTGCATATC
1 CTAAGATTGCATATC
14054486 CTTGAAGATT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 50 1.00
ACGTcount: A:0.40, C:0.16, G:0.08, T:0.36
Consensus pattern (38 bp):
CTAAGATTGCATATCATATCTAAGATTACATATCATAC
Found at i:14055179 original size:101 final size:101
Alignment explanation
Indices: 14055050--14055460 Score: 515
Period size: 101 Copynumber: 4.1 Consensus size: 101
14055040 GACTTGCCAT
* * * *
14055050 CTTCAATC-TTTTACATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAGTCTGTTCC
1 CTTCAATCTTTTTA-ATTGCAATGTTGGGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCC
* ** *
14055114 ACTATACTACCAGGGAAGTAAAATTTGTCATTTGCGG
65 ACTACACCGCCAGGGAAGTAAAATTCGTCATTTGCGG
** * *
14055151 CTTCAA-CGGCTTCAATTACAATGTTGGGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCC
1 CTTCAATC-TTTTTAATTGCAATGTTGGGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCC
* ** *
14055215 ACTACACCGCCAGGGAAGTAAAATTCATTGTTTGTGG
65 ACTACACCGCCAGGGAAGTAAAATTCGTCATTTGCGG
* *
14055252 CTTCAATCTTTTTAATTGCAATGTTCGGGAAACGAGATTCACCGTCGTAGCTTCAATCTGCTCCA
1 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCCA
* **
14055317 CTACACCGCCAGGGAAGTAAAATTTG-CCGTTGCGG
66 CTACACCGCCAGGGAAGTAAAATTCGTCATTTGCGG
* ** *
14055352 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACTAGATTCGTCGTCGTAGTTTCAATCTGTTCCA
1 CTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCCA
* * *
14055417 CTACACCGCCAGGGGAGTAAGATCCGTCA-TTGCGG
66 CTACACCGCCAGGGAAGTAAAATTCGTCATTTGCGG
*
14055452 CTTTAATCT
1 CTTCAATCT
14055461 GCTCCACTGT
Statistics
Matches: 267, Mismatches: 39, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
100 101 0.38
101 162 0.61
102 4 0.01
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (101 bp):
CTTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCCA
CTACACCGCCAGGGAAGTAAAATTCGTCATTTGCGG
Found at i:14055231 original size:50 final size:50
Alignment explanation
Indices: 14055177--14055332 Score: 134
Period size: 50 Copynumber: 3.1 Consensus size: 50
14055167 TACAATGTTG
14055177 GGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
1 GGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
*** * ** * * * ** * * ** *
14055227 GGGAAGTAAAATTCATTGTTTGTGGCTTCAATCTTTTTAATTGCAATGTTC-
1 GGGAAACGAGATTCACCG-TCGTAGCTTCAATCTGTTCCACTACACCG-CCA
*
14055278 GGGAAACGAGATTCACCGTCGTAGCTTCAATCTGCTCCACTACACCGCCA
1 GGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
14055328 GGGAA
1 GGGAA
14055333 GTAAAATTTG
Statistics
Matches: 70, Mismatches: 33, Indels: 6
0.64 0.30 0.06
Matches are distributed among these distances:
49 1 0.01
50 36 0.51
51 32 0.46
52 1 0.01
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (50 bp):
GGGAAACGAGATTCACCGTCGTAGCTTCAATCTGTTCCACTACACCGCCA
Found at i:14055814 original size:34 final size:34
Alignment explanation
Indices: 14055771--14055837 Score: 116
Period size: 34 Copynumber: 2.0 Consensus size: 34
14055761 ACAATCTTCA
* *
14055771 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
1 ACCTATTCCACTACTGACCAAGGAGATAGGATTC
14055805 ACCTATTCCACTACTGACCAAGGAGATAGGATT
1 ACCTATTCCACTACTGACCAAGGAGATAGGATT
14055838 TACAATTTTC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (34 bp):
ACCTATTCCACTACTGACCAAGGAGATAGGATTC
Found at i:14055874 original size:44 final size:44
Alignment explanation
Indices: 14055807--14055925 Score: 202
Period size: 44 Copynumber: 2.7 Consensus size: 44
14055797 TAGGATTCAC
* * *
14055807 CTATTCCACTACTGACCAAGGAGATAGGATTTACAATTTTCAAA
1 CTATTCCACTGCTGACCAGGGAGATAGGACTTACAATTTTCAAA
*
14055851 CTATTCCACTGCTGACCAGGGAGATAGGACTTACAATTTTCAAC
1 CTATTCCACTGCTGACCAGGGAGATAGGACTTACAATTTTCAAA
14055895 CTATTCCACTGCTGACCAGGGAGATAGGACT
1 CTATTCCACTGCTGACCAGGGAGATAGGACT
14055926 GGGGTCATCG
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 71 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (44 bp):
CTATTCCACTGCTGACCAGGGAGATAGGACTTACAATTTTCAAA
Found at i:14055978 original size:88 final size:88
Alignment explanation
Indices: 14055886--14056056 Score: 206
Period size: 88 Copynumber: 1.9 Consensus size: 88
14055876 AGGACTTACA
* *
14055886 ATTTTCAACCT-ATTCCACTGCTGACC-AGGGA-G-ATAGGACTGGGGTCATCGATCTACTTCGC
1 ATTTTCAACCTGATT-CACTGC-AACCTAGGGAGGCA-AGG-CTAGGGTCATCGATCTACTTCGC
14055947 TGTTGGTGCAGGAAGGCAAGATCTGCT
62 TGTTGGTGCAGGAAGGCAAGATCTGCT
* * * * * *
14055974 ATTTTTAACCTGCTTCGCTGCAACCTAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCGCTGTT
1 ATTTTCAACCTGATTCACTGCAACCTAGGGAGGCAAGGCTAGGGTCATCGATCTACTTCGCTGTT
14056039 GGTGCAGGAAGGCAAGAT
66 GGTGCAGGAAGGCAAGAT
14056057 TTGTTATCTT
Statistics
Matches: 71, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
87 3 0.04
88 61 0.86
89 6 0.08
90 1 0.01
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (88 bp):
ATTTTCAACCTGATTCACTGCAACCTAGGGAGGCAAGGCTAGGGTCATCGATCTACTTCGCTGTT
GGTGCAGGAAGGCAAGATCTGCT
Found at i:14057308 original size:13 final size:12
Alignment explanation
Indices: 14057292--14057337 Score: 56
Period size: 13 Copynumber: 3.7 Consensus size: 12
14057282 CCTTTTCCTC
14057292 TTCTTCTTTCTTT
1 TTCTT-TTTCTTT
14057305 TTCTTTTTCTCTT
1 TTCTTTTTCT-TT
*
14057318 TTATTTTTCTTT
1 TTCTTTTTCTTT
*
14057330 TCCTTTTT
1 TTCTTTTT
14057338 TCCATCATCA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
12 13 0.45
13 16 0.55
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (12 bp):
TTCTTTTTCTTT
Found at i:14057311 original size:24 final size:25
Alignment explanation
Indices: 14057279--14057336 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 25
14057269 CGCCTTGGCC
14057279 TTTCCTTTTCCTCTTCT-TCTTTCT
1 TTTCCTTTTCCTCTTCTATCTTTCT
* * * *
14057303 TTTTCTTTTTCTCTTTTATTTTTCT
1 TTTCCTTTTCCTCTTCTATCTTTCT
14057328 TTTCCTTTT
1 TTTCCTTTT
14057337 TTCCATCATC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 14 0.50
25 14 0.50
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.74
Consensus pattern (25 bp):
TTTCCTTTTCCTCTTCTATCTTTCT
Found at i:14057312 original size:25 final size:25
Alignment explanation
Indices: 14057283--14057337 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 25
14057273 TTGGCCTTTC
*
14057283 CTTTTCCTCTTCT-TCTTTCTTTTT
1 CTTTTTCTCTTCTATCTTTCTTTTT
* * *
14057307 CTTTTTCTCTTTTATTTTTCTTTTC
1 CTTTTTCTCTTCTATCTTTCTTTTT
14057332 CTTTTT
1 CTTTTT
14057338 TCCATCATCA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 11 0.42
25 15 0.58
ACGTcount: A:0.02, C:0.24, G:0.00, T:0.75
Consensus pattern (25 bp):
CTTTTTCTCTTCTATCTTTCTTTTT
Found at i:14057338 original size:19 final size:19
Alignment explanation
Indices: 14057302--14057337 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
14057292 TTCTTCTTTC
*
14057302 TTTTTCTTTTTCTCTTTTA
1 TTTTTCTTTTCCTCTTTTA
14057321 TTTTTCTTTTCCT-TTTT
1 TTTTTCTTTTCCTCTTTT
14057338 TCCATCATCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.03, C:0.17, G:0.00, T:0.81
Consensus pattern (19 bp):
TTTTTCTTTTCCTCTTTTA
Found at i:14078201 original size:217 final size:217
Alignment explanation
Indices: 14077873--14078599 Score: 775
Period size: 217 Copynumber: 3.3 Consensus size: 217
14077863 ACAGATCGCT
* * * ** * * *
14077873 GATCACATCAGGTCTTATCTCCTTGAAGTTACAGCGGAATAGACCAAAAAATAGCAGATCTTATC
1 GATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACC-GAAGA-AGCGGATCTTATC
* * * * * *
14077938 TCCCTAAGCAGTAGTGGAGTAGATCGAAGATGGAAAATCCTATCTCCCTGAGGTTGTAGAGGAGC
64 TCCCTAAGTAGTAGTGGAGCAGATCGAAGATGGAAAATCTTATCTCCCTGAGTTTGAAGAGGAGT
* * * * * * *
14078003 AGATTGAAGCTAATAATC-CTATCTTCCTGAAGTTGTAGTAGAGCGGATTGAAATAACAGATCTT
129 AGATTAAAGCCAGTAATCTC-ATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCTT
* *
14078067 ATCTCTCTGAAGTTACAGTAGAGAA
193 ATCTCTCTGAAGTTGCAGTAGAGTA
* *
14078092 GATCGCATTAGGTTTTATCTCCTTGAGGTTGCAGCGGAGCAGACCGAAGAAGCGGATCTTATCTC
1 GATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACCGAAGAAGCGGATCTTATCTC
* * * *
14078157 CCTAAGTAGTAGTAGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGTGGAGTAG
66 CCTAAGTAGTAGTGGAGCAGATCGAAGATGGAAAATCTTATCTCCCTGAGTTTGAAGAGGAGTAG
* * *
14078222 ATTAAAGCCAGTAATATCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCCTATC
131 ATTAAAGCCAGTAATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCTTATC
14078287 TCTCTGAAGTTGCAGTAGAGTA
196 TCTCTGAAGTTGCAGTAGAGTA
* * * * *
14078309 GATCGCATCAGGTCTTATCTCCCTGAGGTTGTAGCAGAGTAGACTG-AGAAAGC-GAGT-TATAT
1 GATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACCGAAG-AAGCGGA-TCT-TAT
* * * * ** * *
14078371 CCCCCTGAAGTTGAAGTGGGGCAGA-CTGAAGATGGTGAATCTTATCTCCCTCAGTTTGCAATAG
63 CTCCCT-AAGTAGTAGTGGAGCAGATC-GAAGATGGAAAATCTTATCTCCCTGAGTTTG-AAGAG
* * * ** * *
14078435 GA-TAGATTAAAGCCAGTAATCTCATCTCCCTGACGTTACAATGGAGTAGATTCAGATGACAGAT
125 GAGTAGATTAAAGCCAGTAATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGAT
* * *
14078499 ATTTTCTCTCTGAAGTTGCAGTATAGTA
190 CTTATCTCTCTGAAGTTGCAGTAGAGTA
* * * *
14078527 GATCGCATCAGATCTTATCTTCTTGAGGTTGCAGCGGAGCAGACTGAAGATG-GTGAATCTTATC
1 GATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACCGAAGAAGCG-G-ATCTTATC
14078591 TCCCTAAGT
64 TCCCTAAGT
14078600 TTGCAGTAGA
Statistics
Matches: 426, Mismatches: 70, Indels: 25
0.82 0.13 0.05
Matches are distributed among these distances:
216 5 0.01
217 196 0.46
218 169 0.40
219 54 0.13
220 2 0.00
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (217 bp):
GATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACCGAAGAAGCGGATCTTATCTC
CCTAAGTAGTAGTGGAGCAGATCGAAGATGGAAAATCTTATCTCCCTGAGTTTGAAGAGGAGTAG
ATTAAAGCCAGTAATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCTTATC
TCTCTGAAGTTGCAGTAGAGTA
Found at i:14078617 original size:174 final size:174
Alignment explanation
Indices: 14078391--14078771 Score: 550
Period size: 174 Copynumber: 2.2 Consensus size: 174
14078381 TTGAAGTGGG
*
14078391 GCAGACTGAAGATGGTGAATCTTATCTCCCTCAGTTTGCAATAGGATAGATTAAAGCCAGTAATC
1 GCAGACTGAAGATGGTGAATCTTATCTCCCTAAGTTTGCAATAGGATAGATTAAAGCCAGTAATC
* * * * * *
14078456 TCATCTCCCTGACGTTACAATGGAGTAGATTCAGATGACAGATATTTTCTCTCTGAAGTTGCAGT
66 TCATCTCCCTGAAGTTACAACGGAGCAGATTCAAATAACAGATATTATCTCTCTGAAGTTGCAGT
* * *
14078521 ATAGTAGATCGCATCAGATCTTATCTTCTTGAGGTTGCAGCGGA
131 AGAGAAGATCGCATCAGATCTTATCTCCTTGAGGTTGCAGCGGA
* *
14078565 GCAGACTGAAGATGGTGAATCTTATCTCCCTAAGTTTGCAGTA-GAGTAGATTAAATCCAGTAAT
1 GCAGACTGAAGATGGTGAATCTTATCTCCCTAAGTTTGCAATAGGA-TAGATTAAAGCCAGTAAT
* * * * *
14078629 CTCATCTCCCTGAAGTTGCAGCGGAGCGGATTCAAATAAGAGATCTTATCTCTCTGAAGTTGCAG
65 CTCATCTCCCTGAAGTTACAACGGAGCAGATTCAAATAACAGATATTATCTCTCTGAAGTTGCAG
*
14078694 TAGAGAAGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGA
130 TAGAGAAGATCGCATCAGATCTTATCTCCTTGAGGTTGCAGCGGA
* **
14078739 GCAGACTGAAGA-AGCAAATCTTATCTCCCTAAG
1 GCAGACTGAAGATGGTGAATCTTATCTCCCTAAG
14078772 CAGTAGTGGA
Statistics
Matches: 185, Mismatches: 21, Indels: 3
0.89 0.10 0.01
Matches are distributed among these distances:
173 20 0.11
174 165 0.89
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.29
Consensus pattern (174 bp):
GCAGACTGAAGATGGTGAATCTTATCTCCCTAAGTTTGCAATAGGATAGATTAAAGCCAGTAATC
TCATCTCCCTGAAGTTACAACGGAGCAGATTCAAATAACAGATATTATCTCTCTGAAGTTGCAGT
AGAGAAGATCGCATCAGATCTTATCTCCTTGAGGTTGCAGCGGA
Found at i:14078638 original size:218 final size:216
Alignment explanation
Indices: 14078043--14078639 Score: 652
Period size: 218 Copynumber: 2.7 Consensus size: 216
14078033 AGTTGTAGTA
* * * * * *
14078043 GAGCGGATTGAAATAACAGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCGCATTAGGTTTT
1 GAGCAGATTCAAATAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTT
* * *
14078108 ATCTCCTTGAGGTTGCAGCGGAGCAGACCGAAGAAGCGG-ATCTTATCTCCCTAAGTAGTAGTAG
66 ATCTCCTTGAGGTTGCAGCGGAGCAGACTGAAGAAG-GGAATCTTATCTCCCTAAGTTGAAGTAG
* *
14078172 AGCAGATCGAAGATGGCA--AATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTA
130 AGCAGAT-GAAGAT--CAGTAATCTTATCTCCCTCAGTTTGCAATGGAGTAGATTAAAGCCAGTA
* *
14078235 ATATCATCTCCCTGAAGTTGCAGTG
192 ATATCATCTCCCTGAAGTTACAATG
* * *
14078260 GAGCGGATTCAAATAATAGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTT
1 GAGCAGATTCAAATAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTT
* * * * * * *
14078325 ATCTCCCTGAGGTTGTAGCAGAGTAGACTG-AGAAAGCGAGT-TATATCCCCCTGAAGTTGAAGT
66 ATCTCCTTGAGGTTGCAGCGGAGCAGACTGAAG-AAGGGAATCT-TATCTCCCT-AAGTTGAAGT
* * *
14078388 GGGGCAGACTGAAGAT-GGTGAATCTTATCTCCCTCAGTTTGCAATAGGA-TAGATTAAAGCCAG
128 AGAGCAGA-TGAAGATCAGT-AATCTTATCTCCCTCAGTTTGCAAT-GGAGTAGATTAAAGCCAG
* *
14078451 TAATCTCATCTCCCTGACGTTACAATG
190 TAATATCATCTCCCTGAAGTTACAATG
* * * * * * *
14078478 GAGTAGATTCAGATGACAGATATTTTCTCTCTGAAGTTGCAGTATAGTAGATCGCATCAGATCTT
1 GAGCAGATTCAAATAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTT
* * *
14078543 ATCTTCTTGAGGTTGCAGCGGAGCAGACTGAAGATGGTGAATCTTATCTCCCTAAGTTTGCAGTA
66 ATCTCCTTGAGGTTGCAGCGGAGCAGACTGAAGAAGG-GAATCTTATCTCCCTAAG-TTGAAGTA
* * *
14078608 GAGTAGATTAA-ATCCAGTAATCTCATCTCCCT
129 GAGCAGATGAAGAT-CAGTAATCTTATCTCCCT
14078640 GAAGTTGCAG
Statistics
Matches: 313, Mismatches: 52, Indels: 29
0.79 0.13 0.07
Matches are distributed among these distances:
216 4 0.01
217 97 0.31
218 181 0.58
219 30 0.10
220 1 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (216 bp):
GAGCAGATTCAAATAACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTT
ATCTCCTTGAGGTTGCAGCGGAGCAGACTGAAGAAGGGAATCTTATCTCCCTAAGTTGAAGTAGA
GCAGATGAAGATCAGTAATCTTATCTCCCTCAGTTTGCAATGGAGTAGATTAAAGCCAGTAATAT
CATCTCCCTGAAGTTACAATG
Found at i:14078680 original size:44 final size:44
Alignment explanation
Indices: 14077978--14080850 Score: 578
Period size: 44 Copynumber: 66.0 Consensus size: 44
14077968 TGGAAAATCC
* * * * * * *
14077978 TATCTCCCTGAGGTTGTAGAGGAGCAGATTGAAGCTAATA-ATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAA-ATAAGAGATCT
* * * * * *
14078022 TATCTTCCTGAAGTTGTAGTAGAGCGGATTGAAATAACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * * ** * *
14078066 TATCTCTCTGAAGTTACAGTAGAGAAGA-TCGCATTAG-G-TTT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * * * * *
14078107 TATCTCCTTGAGGTTGCAGCGGAGCAGA-CCGAAGAAGCGGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAG-AGATCT
* * * * *
14078151 TATCTCCCT-AAGTAGTAGTAGAGCAGA-TCGAAGAT-GGCAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTC-AA-ATAAG-AGATCT
* ** *
14078195 TATCTCCCTG-AGTTTGCAGTGGAGTAGATT-AAAGCCAGTA-ATAT
1 TATCTCCCTGAAG-TTGCAGTGGAGCAGATTCAAA-TAAG-AGATCT
* * * *
14078239 CATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * ** *
14078283 TATCTCTCTGAAGTTGCAGTAGAGTAGA-TCGCATCAG-G-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * ** * * * * *
14078324 TATCTCCCTGAGGTTGTAGCAGAGTAGACTGAGA-AAGCGAGT-T
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGA-TCT
* * * * * * *
14078367 ATATCCCCCTGAAGTTGAAGTGGGGCAGACTGAAGAT-GGTGAATCT
1 -TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAA-ATAAGAG-ATCT
* * * **
14078413 TATCTCCCT-CAGTTTGCAATAGGA-TAGATT-AAAGCCAGTA-ATCT
1 TATCTCCCTGAAG-TTGCAGT-GGAGCAGATTCAAA-TAAG-AGATCT
* * * * * * * * *
14078457 CATCTCCCTGACGTTACAATGGAGTAGATTCAGATGACAGATAT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * ** * ** *
14078501 TTTCTCTCTGAAGTTGCAGTATAGTAGA-TCGCAT--CAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * * * * * *
14078542 TATCTTCTTGAGGTTGCAGCGGAGCAGACTGAAGAT-GGTGAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAA-ATAAGAG-ATCT
* * *
14078587 TATCTCCCT-AAGTTTGCAGTAGAGTAGATT-AAATCCAGTA-ATCT
1 TATCTCCCTGAAG-TTGCAGTGGAGCAGATTCAAAT-AAG-AGATCT
* * *
14078631 CATCTCCCTGAAGTTGCAGCGGAGCGGATTCAAATAAGAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * ** *
14078675 TATCTCTCTGAAGTTGCAGTAGAGAAGA-TCGCATCAG-G-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * * * * *
14078716 TATCTCCTTGAGGTTGCAGCGGAGCAGACT-GAAGAAGCAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAG-AGATCT
** * * *
14078760 TATCTCCCT-AAGCAGTAGTGGAGCAGA-TCGAAGAT-GGCAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTC-AA-ATAAG-AGATCT
* * *
14078804 TATCTCCCTG-AGTTTGCAGTGGAGTAGATT-AAAGCTAATA-ATCC
1 TATCTCCCTGAAG-TTGCAGTGGAGCAGATTCAAA--TAAGAGATCT
* * * * * *
14078848 CATCTCCCTAAAGTTGCAGTGGAGCGGATTCAAATGATAGATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * ** *
14078892 TATCTCTCTGAAGTTGCAGTAGAGTAGA-TCGCATCAG-G-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * *
14078933 TATCTCCCTGAGGTTGCAGCGGAGCAGACTGAAA-AAGCA-AGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAG-AGA-TCT
** * * * *
14078977 TATC-CCCTTGAAGCAGTAGTGGAGCAGA-TCGAAGATGACAAATCT
1 TATCTCCC-TGAAGTTGCAGTGGAGCAGATTC-AA-ATAAGAGATCT
* **
14079022 TATCTCCCT-AAGTTTGCAGTGGAGTAGATT-AAAGCCAGTA-ATCT
1 TATCTCCCTGAAG-TTGCAGTGGAGCAGATTCAAA-TAAG-AGATCT
* * * *
14079066 CATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCA
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * ** *
14079110 TATCTCTCTGAAGTTGCAGTAGAGTAGA-TCGCATCAG-G-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
** *
14079151 TATCTCCCTG-AGCTTGCAGTGGAGCAGACTGAGAAATCA-AG-TCT
1 TATCTCCCTGAAG-TTGCAGTGGAGCAGA-T-TCAAATAAGAGATCT
* * * * * * *
14079195 TATCCCCCTGAAGTTGAAGTGGGGCAGACTGAAGAT-GGTGAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAA-ATAAGAG-ATCT
* ** *
14079240 TATCTCCCTG-AGTTTGCAGTGGAGTAGATT-AAAGCCAGTA-ATCC
1 TATCTCCCTGAAG-TTGCAGTGGAGCAGATTCAAA-TAAG-AGATCT
* * * *
14079284 TATCTCCCTAAAGTTGCAATGGAGCGGATTCAAATAACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * * ** *
14079328 TATCTCTCTAAAGTTGCAGTAGAGTAGA-TCGCATCA-AG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
** * * *
14079369 TAAATCCCT-AAGGTTGCAGCGGAGAAGACT-AAGA-AAGCA-AGTCT
1 TATCTCCCTGAA-GTTGCAGTGGAGCAGATTCAA-ATAAG-AGA-TCT
* * * * * * *
14079413 TATC-CCCTTGAAGTTGAAGTGGGGTAGACTGAAGAT-TGTGAATCT
1 TATCTCCC-TGAAGTTGCAGTGGAGCAGATTCAA-ATAAGAG-ATCT
* * * * ** *
14079458 TATCTCCCTG-AGTTTGCAGTGGAGTATATT-TAATCTAGTTATCC
1 TATCTCCCTGAAG-TTGCAGTGGAGCAGATTCAAAT-AAGAGATCT
* * * * * *
14079502 CATCTCCCTAAAGTTGTAATGGAGCGGATTCAAATAACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * ** * *
14079546 TATCTCTCTGAAGTTGCAGTAGAGTAGA-TCGCATCA-CG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * *
14079587 TATCTCCCT-AAGATTGCAGCGGAGCAGA-CCGAAGAAGCAGATCT
1 TATCTCCCTGAAG-TTGCAGTGGAGCAGATTCAAATAAG-AGATCT
** * * * *
14079631 TATCTCCCT-AAGCAGTAGTGAAGCTA-A-TCGAAGAT-GGCAAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGC-AGATTC-AA-ATAAG-AGATCT
* ** ** *
14079675 TATCTCCCTG-AGTTTGTAGTGGATTAGATT-AAAGCCAGTA-ATCA
1 TATCTCCCTGAAG-TTGCAGTGGAGCAGATTCAAA-TAAG-AGATCT
* * * *
14079719 CATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * ** *
14079763 TATCTCTCTGAAGTTGCAGTAGAGTAGA-TCGCATCA-AG-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * * * *
14079804 TATCTCCCTGAGGTTACAGCGGAGCAGACTGAGA-AAGCA-AGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAG-AGA-TCT
* ** * * *
14079848 TATC-CCCTTCAAGCAGTAGTGGAGCAGA-TCGAAGAT-GGCAAATCT
1 TATCTCCC-TGAAGTTGCAGTGGAGCAGATTC-AA-ATAAG-AGATCT
* ** *
14079893 TATCTCCCT-AAGTTTGCAGTGGAGTAGATT-AAAGCCAGTA-ATCC
1 TATCTCCCTGAAG-TTGCAGTGGAGCAGATTCAAA-TAAG-AGATCT
* * * * * *
14079937 CATCTCCTTGAAGTTGCAATAGAGCGGATTCAAATAACAGATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * ** *
14079981 TATCTCTCC-GAAGTTGCAGTAGAGTAGA-TCGCATCAG-G-TCT
1 TATCTC-CCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * *
14080022 TATCTCCCTGAGGTTGCAGCGGAGCAGACT-AAGA-AAGCA-AGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAA-ATAAG-AGA-TCT
* * * * * * *
14080066 TATC-CCCTTGAGGTTGAAGTGGGGCAGACTGAAGAT-GGTGAATCT
1 TATCTCCC-TGAAGTTGCAGTGGAGCAGATTCAA-ATAAGAG-ATCT
* * * **
14080111 TATCTCCCT-CAGTTTGCAGTGGGGTAGATT-AAAGCCAGTA-AT-T
1 TATCTCCCTGAAG-TTGCAGTGGAGCAGATTCAAA-TAAG-AGATCT
* * * * * * *
14080154 CATCTCCCTAAAGTTGCAATGAAGCTGATTCAAATAACAGCTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * * *
14080198 TATCTCTCTGAAGTTGCAGTAGAGTAGATGGC--ATCAG-G-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGAT-TCAAATAAGAGATCT
* * * * * *
14080239 TATCTCCCTGAGGTTGTAGCGGAGCAGACTGAGA-AAGCA-AGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAG-AGA-TCT
* * * * * * * *
14080283 TATCCCCCTAAAGTTGAAATGGGGCAGACTGAAGATGATGA-ATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAA-AT-AAGAGATCT
* * * ** *
14080328 TATCTCCATG-AGTTTGTAGTGGAGTAGATT-AAAGCCAGTA-ATCC
1 TATCTCCCTGAAG-TTGCAGTGGAGCAGATTCAAA-TAAG-AGATCT
* * * *
14080372 CATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * * ** *
14080416 TATCTCTCTGAAGTTTCAGTAGAGTAGA-TCGCATCAG-G-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * * * *
14080457 TATCTCCTTGAGGTTGCAGCGGAGCAGACTGAGA-AAGCA-AGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAG-AGA-TCT
* * * *
14080501 TATC-CCCTTGAAGTAGTAGTGGAGCAGA-TCGAAGAT-GGCAAATCT
1 TATCTCCC-TGAAGTTGCAGTGGAGCAGATTC-AA-ATAAG-AGATCT
* **
14080546 TATCTCCCT-AAGTTTGCAGTGGAGTAGATT-AAAGCCAGTA-ATCT
1 TATCTCCCTGAAG-TTGCAGTGGAGCAGATTCAAA-TAAG-AGATCT
* * * *
14080590 CATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * ** *
14080634 TATCTCTCTGAAGTTGCAGTAGAGTAGA-TCGCATCAG-G-TCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
* * * * *
14080675 TATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAA-AACA-AGTCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCA-AATAAGAGA-TCT
* * * * * * *
14080719 TATCCCCCTGAAGTTGAAGTGGGGCAGACTGAAGAT-GGTGAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAA-ATAAGAG-ATCT
* ** **
14080764 TATCTCCCTGAATTTGCAGTGGAGTGGATT-AAAGCCAGTA-ATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAA-TAAG-AGATCT
* * *
14080808 CATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATC
1 TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATC
14080851 CTATAGATCC
Statistics
Matches: 2023, Mismatches: 589, Indels: 434
0.66 0.19 0.14
Matches are distributed among these distances:
40 9 0.00
41 339 0.17
42 37 0.02
43 187 0.09
44 1056 0.52
45 359 0.18
46 34 0.02
47 2 0.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGATTCAAATAAGAGATCT
Found at i:14079092 original size:218 final size:218
Alignment explanation
Indices: 14078562--14080920 Score: 3249
Period size: 218 Copynumber: 10.8 Consensus size: 218
14078552 AGGTTGCAGC
** * *
14078562 GGAGCAGACTGAAGATGGTGAATCTTATCTCCCTAAGTTTGCAGTAGAGTAGATTAAATCCAGTA
1 GGAGCAGACTGAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTA
* * *
14078627 ATCTCATCTCCCTGAAGTTGCAGCGGAGCGGATTCAAATAAGAGATCTTATCTCTCTGAAGTTGC
66 ATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCCTATCTCTCTGAAGTTGC
* * * *
14078692 AGTAGAGAAGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACTGAAGAAGCAAA
131 AGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAAAAAGCAAG
* *
14078757 TCTTATCTCCC-T-AAGCAGTAGT
196 TCTTATC-CCCTTGAAGTAGAAGT
* * *
14078779 GGAGCAGA-TCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCTAAT
1 GGAGCAGACT-GAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGT
* * * *
14078843 AATCCCATCTCCCTAAAGTTGCAGTGGAGCGGATTCAAATGATAGATCCTATCTCTCTGAAGTTG
65 AATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCCTATCTCTCTGAAGTTG
14078908 CAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAAAAAGCAA
130 CAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAAAAAGCAA
* *
14078973 GTCTTATCCCCTTGAAGCAGTAGT
195 GTCTTATCCCCTTGAAGTAGAAGT
*
14078997 GGAGCAGA-TCGAAGATGACAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGT
1 GGAGCAGACT-GAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGT
* *
14079061 AATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCATATCTCTCTGAAGTTG
65 AATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCCTATCTCTCTGAAGTTG
* * * *
14079126 CAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGCTTGCAGTGGAGCAGACTGAGAAATCAA
130 CAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAAAAAGCAA
* *
14079191 GTCTTATCCCCCTGAAGTTGAAGT
195 GTCTTATCCCCTTGAAGTAGAAGT
* ** *
14079215 GGGGCAGACTGAAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTA
1 GGAGCAGACTGAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTA
* * * *
14079280 ATC-CTATCTCCCTAAAGTTGCAATGGAGCGGATTCAAATAACAGATCTTATCTCTCTAAAGTTG
66 ATCTC-ATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCCTATCTCTCTGAAGTTG
* ** * *
14079344 CAGTAGAGTAGATCGCATCAAGTCTTAAATCCCTAAGGTTGCAGCGGAGAAGACT-AAGAAAGCA
130 CAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAA-AAAGCA
*
14079408 AGTCTTATCCCCTTGAAGTTGAAGT
194 AGTCTTATCCCCTTGAAGTAGAAGT
* * * ** * * * * * *
14079433 GGGGTAGACTGAAGATTGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTATATTTAATCTAGTT
1 GGAGCAGACTGAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTA
* * * * *
14079498 ATCCCATCTCCCTAAAGTTGTAATGGAGCGGATTCAAATAACAGATCTTATCTCTCTGAAGTTGC
66 ATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCCTATCTCTCTGAAGTTGC
* * * * *
14079563 AGTAGAGTAGATCGCATCACGTCTTATCTCCCTAAGATTGCAGCGGAGCAGACCGAAGAAGC-AG
131 AGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAAAAAGCAAG
* *
14079627 ATCTTATCTCCC-T-AAGCAGTAGT
196 -TCTTATC-CCCTTGAAGTAGAAGT
* * * *
14079650 GAAGCTA-A-TCGAAGATGGCAAATCTTATCTCCCTGAGTTTGTAGTGGATTAGATTAAAGCCAG
1 GGAGC-AGACT-GAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAG
* *
14079713 TAATCACATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCCTATCTCTCTGAAGTT
64 TAATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCCTATCTCTCTGAAGTT
* * *
14079778 GCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGGTTACAGCGGAGCAGACTGAGAAAGCA
129 GCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAAAAAGCA
* * *
14079843 AGTCTTATCCCCTTCAAGCAGTAGT
194 AGTCTTATCCCCTTGAAGTAGAAGT
14079868 GGAGCAGA-TCGAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGT
1 GGAGCAGACT-GAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGT
* * * * * *
14079932 AATCCCATCTCCTTGAAGTTGCAATAGAGCGGATTCAAATAACAGATCTTATCTCTCCGAAGTTG
65 AATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCCTATCTCTCTGAAGTTG
14079997 CAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACT-AAGAAAGCA
130 CAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAA-AAAGCA
* *
14080061 AGTCTTATCCCCTTGAGGTTGAAGT
194 AGTCTTATCCCCTTGAAGTAGAAGT
* ** * *
14080086 GGGGCAGACTGAAGATGGTGAATCTTATCTCCCTCAGTTTGCAGTGGGGTAGATTAAAGCCAGTA
1 GGAGCAGACTGAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTA
* * * * * *
14080151 AT-TCATCTCCCTAAAGTTGCAATGAAGCTGATTCAAATAACAGCTCTTATCTCTCTGAAGTTGC
66 ATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCCTATCTCTCTGAAGTTGC
* * *
14080215 AGTAGAGTAGATGGCATCAGGTCTTATCTCCCTGAGGTTGTAGCGGAGCAGACTGAGAAAGCAAG
131 AGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAAAAAGCAAG
* * * *
14080280 TCTTATCCCCCTAAAGTTGAAAT
196 TCTTATCCCCTTGAAGTAGAAGT
* *** * * *
14080303 GGGGCAGACTGAAGATGATGAATCTTATCTCCATGAGTTTGTAGTGGAGTAGATTAAAGCCAGTA
1 GGAGCAGACTGAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTA
* * *
14080368 ATCCCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCCTATCTCTCTGAAGTTTC
66 ATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCCTATCTCTCTGAAGTTGC
* *
14080433 AGTAGAGTAGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAG
131 AGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAAAAAGCAAG
*
14080498 TCTTATCCCCTTGAAGTAGTAGT
196 TCTTATCCCCTTGAAGTAGAAGT
14080521 GGAGCAGA-TCGAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGT
1 GGAGCAGACT-GAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGT
14080585 AATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCCTATCTCTCTGAAGTTG
65 AATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCCTATCTCTCTGAAGTTG
14080650 CAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAA-CA
130 CAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGA-AAAAGCA
* *
14080714 AGTCTTATCCCCCTGAAGTTGAAGT
194 AGTCTTATCCCCTTGAAGTAGAAGT
* ** *
14080739 GGGGCAGACTGAAGATGGTGAATCTTATCTCCCTGAA-TTTGCAGTGGAGTGGATTAAAGCCAGT
1 GGAGCAGACTGAAGATGGCAAATCTTATCTCCCT-AAGTTTGCAGTGGAGTAGATTAAAGCCAGT
14080803 AATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCCTATAGATCCTATCTCT
65 AATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTC--A-AATA-A--C---AGATCCTATCTCT
* *
14080868 CTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATTTCCCTGATGTTGCAG
121 CTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAG
14080921 ACTGAGAATA
Statistics
Matches: 1929, Mismatches: 180, Indels: 56
0.89 0.08 0.03
Matches are distributed among these distances:
216 8 0.00
217 563 0.29
218 1273 0.66
219 14 0.01
220 1 0.00
221 4 0.00
222 1 0.00
224 1 0.00
227 64 0.03
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (218 bp):
GGAGCAGACTGAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTA
ATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCCTATCTCTCTGAAGTTGC
AGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAAAAAGCAAG
TCTTATCCCCTTGAAGTAGAAGT
Found at i:14079121 original size:609 final size:609
Alignment explanation
Indices: 14078023--14079182 Score: 1806
Period size: 609 Copynumber: 1.9 Consensus size: 609
14078013 TAATAATCCT
* * * *
14078023 ATCTTCCTGAAGTTGTAGTAGAGCGGATTGAAATAACAGATCTTATCTCTCTGAAGTTACAGTAG
1 ATCTCCCTGAAGTTGCAGCAGAGCGGATTCAAATAACAGATCTTATCTCTCTGAAGTTACAGTAG
* * **
14078088 AGAAGATCGCATTAGGTTTTATCTCCTTGAGGTTGCAGCGGAGCAGACCGAAGAAGCGGATCTTA
66 AGAAGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACCGAAGAAGCAAATCTTA
*
14078153 TCTCCCTAAGTAGTAGTAGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGTGGA
131 TCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGTGGA
* * *
14078218 GTAGATTAAAGCCAGTAATATCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCC
196 GTAGATTAAAGCCAATAATACCATCTCCCTAAAGTTGCAGTGGAGCGGATTCAAATAATAGATCC
*
14078283 TATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGTAGCAGAG
261 TATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCAGAG
* * * ** * ***
14078348 TAGACTGAGAAAGCGAGTTATATCCCCCTGAAGTTGAAGTGGGGCAGACTGAAGATGGTGAATCT
326 CAGACTGAAAAAGCAAGTTATATCCCCCTGAAGCAGAAGTGGAGCAGACTGAAGATGACAAATCT
* *
14078413 TATCTCCCTCAGTTTGCAATAGGATAGATTAAAGCCAGTAATCTCATCTCCCTGACGTTACAATG
391 TATCTCCCTAAGTTTGCAATAGGATAGATTAAAGCCAGTAATCTCATCTCCCTGAAGTTACAATG
* * * * *
14078478 GAGTAGATTCAGATGACAGATATTTTCTCTCTGAAGTTGCAGTATAGTAGATCGCATCAGATCTT
456 GAGCAGATTCAAATAACAGATATTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGATCTT
* * *
14078543 ATCTTCTTGAGGTTGCAGCGGAGCAGACTGAAGATGGTGAATCTTATCTCCCTAAGTTTGCAGTA
521 ATCTCCCTGAGCTTGCAGCGGAGCAGACTGAAGATGGTGAATCTTATCTCCCTAAGTTTGCAGTA
14078608 GAGTAGATTAAATCCAGTAATCTC
586 GAGTAGATTAAATCCAGTAATCTC
* * *
14078632 ATCTCCCTGAAGTTGCAGCGGAGCGGATTCAAATAAGAGATCTTATCTCTCTGAAGTTGCAGTAG
1 ATCTCCCTGAAGTTGCAGCAGAGCGGATTCAAATAACAGATCTTATCTCTCTGAAGTTACAGTAG
*
14078697 AGAAGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACTGAAGAAGCAAATCTTA
66 AGAAGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACCGAAGAAGCAAATCTTA
*
14078762 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGTGGA
131 TCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGTGGA
* * *
14078827 GTAGATTAAAGCTAATAATCCCATCTCCCTAAAGTTGCAGTGGAGCGGATTCAAATGATAGATCC
196 GTAGATTAAAGCCAATAATACCATCTCCCTAAAGTTGCAGTGGAGCGGATTCAAATAATAGATCC
*
14078892 TATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAG
261 TATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCAGAG
* *
14078957 CAGACTGAAAAAGCAAGTCT-TATCCCCTTGAAGCAGTAGTGGAGCAGA-TCGAAGATGACAAAT
326 CAGACTGAAAAAGCAAGT-TATATCCCCCTGAAGCAGAAGTGGAGCAGACT-GAAGATGACAAAT
* *
14079020 CTTATCTCCCTAAGTTTGCAGT-GGAGTAGATTAAAGCCAGTAATCTCATCTCCCTGAAGTTGCA
389 CTTATCTCCCTAAGTTTGCAATAGGA-TAGATTAAAGCCAGTAATCTCATCTCCCTGAAGTTACA
* * * *
14079084 GTGGAGCGGATTCAAATAATAGATCA-TATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGG
453 ATGGAGCAGATTCAAATAACAGAT-ATTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGA
*
14079148 TCTTATCTCCCTGAGCTTGCAGTGGAGCAGACTGA
517 TCTTATCTCCCTGAGCTTGCAGCGGAGCAGACTGA
14079183 GAAATCAAGT
Statistics
Matches: 497, Mismatches: 50, Indels: 8
0.90 0.09 0.01
Matches are distributed among these distances:
608 4 0.01
609 491 0.99
610 2 0.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (609 bp):
ATCTCCCTGAAGTTGCAGCAGAGCGGATTCAAATAACAGATCTTATCTCTCTGAAGTTACAGTAG
AGAAGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACCGAAGAAGCAAATCTTA
TCTCCCTAAGCAGTAGTAGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGTGGA
GTAGATTAAAGCCAATAATACCATCTCCCTAAAGTTGCAGTGGAGCGGATTCAAATAATAGATCC
TATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCAGAG
CAGACTGAAAAAGCAAGTTATATCCCCCTGAAGCAGAAGTGGAGCAGACTGAAGATGACAAATCT
TATCTCCCTAAGTTTGCAATAGGATAGATTAAAGCCAGTAATCTCATCTCCCTGAAGTTACAATG
GAGCAGATTCAAATAACAGATATTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGATCTT
ATCTCCCTGAGCTTGCAGCGGAGCAGACTGAAGATGGTGAATCTTATCTCCCTAAGTTTGCAGTA
GAGTAGATTAAATCCAGTAATCTC
Found at i:14079335 original size:653 final size:652
Alignment explanation
Indices: 14078562--14080920 Score: 3525
Period size: 653 Copynumber: 3.6 Consensus size: 652
14078552 AGGTTGCAGC
** * *
14078562 GGAGCAGA-CTGAAGATGGTGAATCTTATCTCCCTAAGTTTGCAGTAGAGTAGATTAAATCCAGT
1 GGAGCAGATC-GAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGT
** *
14078626 AATCTCATCTCCCTGAAGTTGCAGCGGAGCGGATTCAAATAAGAGATCTTATCTCTCTGAAGTTG
65 AATCTCATCTCCCTGAAGTTGCAATGGAGCGGATTCAAATAACAGATCTTATCTCTCTGAAGTTG
* *
14078691 CAGTAGAGAAGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACTGAAG-AAGCA
130 CAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACT-AAGAAAGCA
* ** * * **
14078755 AATCTTATCTCCC-T-AAGCAGTAGTGGAGCAGA-TCGAAGATGGCAAATCTTATCTCCCTGAGT
194 AGTCTTATC-CCCTTGAAGTTGAAGTGGGGCAGACT-GAAGATGGTGAATCTTATCTCCCTGAGT
* * *
14078817 TTGCAGTGGAGTAGATTAAAGCTAATAATCCCATCTCCCTAAAGTTGCAGTGGAGCGGATTCAAA
257 TTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTCCCTAAAGTTGCAATGGAGCGGATTCAAA
* *
14078882 TGATAGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGT
322 TAACAGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGT
14078947 TGCAGCGGAGCAGACTGAAAAAGCAAGTCTTATCCCCTTGAAGCAGTAGTGGAGCAGATCGAAGA
387 TGCAGCGGAGCAGACTGAAAAAGCAAGTCTTATCCCC-T-AAGCAGTAGTGGAGCAGATCGAAGA
* * *
14079012 TGACAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCTCATCTCCCTGA
450 TGACAAATCTTATCTCCCTGAGTTTGTAGTGGAGTAGATTAAAGCCAGTAATCACATCTCCCTGA
*
14079077 AGTTGCAGTGGAGCGGATTCAAATAATAGATCATATCTCTCTGAAGTTGCAGTAGAGTAGATCGC
515 AGTTGCAGTGGAGCGGATTCAAATAATAGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGC
* * * *
14079142 ATCAGGTCTTATCTCCCTGAGCTTGCAGTGGAGCAGACTGAGAAATCAAGTCTTATCCCCCTGAA
580 ATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCCTTGAA
* *
14079207 GTTGAAGT
645 GTAGTAGT
* ** *
14079215 GGGGCAGA-CTGAAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGT
1 GGAGCAGATC-GAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGT
* *
14079279 AATC-CTATCTCCCTAAAGTTGCAATGGAGCGGATTCAAATAACAGATCTTATCTCTCTAAAGTT
65 AATCTC-ATCTCCCTGAAGTTGCAATGGAGCGGATTCAAATAACAGATCTTATCTCTCTGAAGTT
* ** * *
14079343 GCAGTAGAGTAGATCGCATCAAGTCTTAAATCCCTAAGGTTGCAGCGGAGAAGACTAAGAAAGCA
129 GCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTAAGAAAGCA
* *
14079408 AGTCTTATCCCCTTGAAGTTGAAGTGGGGTAGACTGAAGATTGTGAATCTTATCTCCCTGAGTTT
194 AGTCTTATCCCCTTGAAGTTGAAGTGGGGCAGACTGAAGATGGTGAATCTTATCTCCCTGAGTTT
* * * * * *
14079473 GCAGTGGAGTATATTTAATCTAGTTATCCCATCTCCCTAAAGTTGTAATGGAGCGGATTCAAATA
259 GCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTCCCTAAAGTTGCAATGGAGCGGATTCAAATA
* * * *
14079538 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCACGTCTTATCTCCCTAAGATTG
324 ACAGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTG
* * *
14079603 CAGCGGAGCAGACCGAAGAAGC-AGATCTTATCTCCCTAAGCAGTAGTGAAGCTA-ATCGAAGAT
389 CAGCGGAGCAGACTGAAAAAGCAAG-TCTTATC-CCCTAAGCAGTAGTGGAGC-AGATCGAAGAT
* *
14079666 GGCAAATCTTATCTCCCTGAGTTTGTAGTGGATTAGATTAAAGCCAGTAATCACATCTCCCTGAA
451 GACAAATCTTATCTCCCTGAGTTTGTAGTGGAGTAGATTAAAGCCAGTAATCACATCTCCCTGAA
14079731 GTTGCAGTGGAGCGGATTCAAATAATAGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCA
516 GTTGCAGTGGAGCGGATTCAAATAATAGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCA
* * *
14079796 TCAAGTCTTATCTCCCTGAGGTTACAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCCTTCAAG
581 TCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCCTTGAAG
*
14079861 CAGTAGT
646 TAGTAGT
14079868 GGAGCAGATCGAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTA
1 GGAGCAGATCGAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTA
* * * *
14079933 ATCCCATCTCCTTGAAGTTGCAATAGAGCGGATTCAAATAACAGATCTTATCTCTCCGAAGTTGC
66 ATCTCATCTCCCTGAAGTTGCAATGGAGCGGATTCAAATAACAGATCTTATCTCTCTGAAGTTGC
14079998 AGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTAAGAAAGCAAG
131 AGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTAAGAAAGCAAG
* *
14080063 TCTTATCCCCTTGAGGTTGAAGTGGGGCAGACTGAAGATGGTGAATCTTATCTCCCTCAGTTTGC
196 TCTTATCCCCTTGAAGTTGAAGTGGGGCAGACTGAAGATGGTGAATCTTATCTCCCTGAGTTTGC
* * * *
14080128 AGTGGGGTAGATTAAAGCCAGTAAT-TCATCTCCCTAAAGTTGCAATGAAGCTGATTCAAATAAC
261 AGTGGAGTAGATTAAAGCCAGTAATCCCATCTCCCTAAAGTTGCAATGGAGCGGATTCAAATAAC
* * * *
14080192 AGCTCTTATCTCTCTGAAGTTGCAGTAGAGTAGATGGCATCAGGTCTTATCTCCCTGAGGTTGTA
326 AGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCA
* ** * * *
14080257 GCGGAGCAGACTGAGAAAGCAAGTCTTATCCCCCTAAAGTTGAAATGGGGCAGA-CTGAAGATGA
391 GCGGAGCAGACTGAAAAAGCAAGTCTTAT-CCCCT-AAGCAGTAGTGGAGCAGATC-GAAGATGA
** * *
14080321 TGAATCTTATCTCCATGAGTTTGTAGTGGAGTAGATTAAAGCCAGTAATCCCATCTCCCTGAAGT
453 CAAATCTTATCTCCCTGAGTTTGTAGTGGAGTAGATTAAAGCCAGTAATCACATCTCCCTGAAGT
*
14080386 TGCAGTGGAGCGGATTCAAATAATAGATCCTATCTCTCTGAAGTTTCAGTAGAGTAGATCGCATC
518 TGCAGTGGAGCGGATTCAAATAATAGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATC
*
14080451 AGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCCTTGAAGTA
583 AGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCCTTGAAGTA
14080516 GTAGT
648 GTAGT
14080521 GGAGCAGATCGAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTA
1 GGAGCAGATCGAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTA
* *
14080586 ATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCCTATCTCTCTGAAGTTGC
66 ATCTCATCTCCCTGAAGTTGCAATGGAGCGGATTCAAATAACAGATCTTATCTCTCTGAAGTTGC
* *
14080651 AGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAACAAG
131 AGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTAAGAAAGCAAG
* *
14080716 TCTTATCCCCCTGAAGTTGAAGTGGGGCAGACTGAAGATGGTGAATCTTATCTCCCTGAATTTGC
196 TCTTATCCCCTTGAAGTTGAAGTGGGGCAGACTGAAGATGGTGAATCTTATCTCCCTGAGTTTGC
* * * *
14080781 AGTGGAGTGGATTAAAGCCAGTAATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAAT
261 AGTGGAGTAGATTAAAGCCAGTAATCCCATCTCCCTAAAGTTGCAATGGAGCGGATTC--A-AAT
*
14080846 AGATCCTATAGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATTTCCCT
323 A-A--C---AGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCT
*
14080911 GATGTTGCAG
382 GAGGTTGCAG
14080921 ACTGAGAATA
Statistics
Matches: 1545, Mismatches: 136, Indels: 40
0.90 0.08 0.02
Matches are distributed among these distances:
652 130 0.08
653 1128 0.73
654 216 0.14
655 4 0.00
656 1 0.00
657 4 0.00
658 1 0.00
660 1 0.00
663 60 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (652 bp):
GGAGCAGATCGAAGATGGCAAATCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTA
ATCTCATCTCCCTGAAGTTGCAATGGAGCGGATTCAAATAACAGATCTTATCTCTCTGAAGTTGC
AGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTAAGAAAGCAAG
TCTTATCCCCTTGAAGTTGAAGTGGGGCAGACTGAAGATGGTGAATCTTATCTCCCTGAGTTTGC
AGTGGAGTAGATTAAAGCCAGTAATCCCATCTCCCTAAAGTTGCAATGGAGCGGATTCAAATAAC
AGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCA
GCGGAGCAGACTGAAAAAGCAAGTCTTATCCCCTAAGCAGTAGTGGAGCAGATCGAAGATGACAA
ATCTTATCTCCCTGAGTTTGTAGTGGAGTAGATTAAAGCCAGTAATCACATCTCCCTGAAGTTGC
AGTGGAGCGGATTCAAATAATAGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGG
TCTTATCTCCCTGAGGTTGCAGCGGAGCAGACTGAGAAAGCAAGTCTTATCCCCTTGAAGTAGTA
GT
Found at i:14079380 original size:609 final size:607
Alignment explanation
Indices: 14078023--14079351 Score: 1539
Period size: 609 Copynumber: 2.2 Consensus size: 607
14078013 TAATAATCCT
* * ** * * * * * * * * *
14078023 ATCTTCCTGAAGTTGTAGTAGAGCGGATTGAAATAACAGATCTTATCTCTCTGAAGTTACAGTAG
1 ATCTCCCTGAAGTTGCAGCGGAGCAGATTCAAACAAGAGATCCTATCTCCCTAAAGTTGCAATAG
** * * * * * * * **
14078088 AGAAGATCGCATTAGGTTTTATCTCCTTGAGGTTGCAGCGGAGCAGACCGAAGAAGCGGATCTTA
66 AGAAGATCAAATCAGATCTTATCTCCTTAAAGTTGCAGCAGAGCAGA-CTAAGAAGCAAATCTTA
** *
14078153 TCTCCCTAAGTAGTAGTAGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGTGGA
130 AATCCCTAAGCAGTAGTAGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGTGGA
* * *
14078218 GTAGATTAAAGCCAGTAATATCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCC
195 GTAGATTAAAGCCAATAATACCATCTCCCTAAAGTTGCAGTGGAGCGGATTCAAATAATAGATCC
*
14078283 TATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGTAGCAGAG
260 TATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCAGAG
* * * ** * ***
14078348 TAGACTGAGAAAGCGAGTTATATCCCCCTGAAGTTGAAGTGGGGCAGACTGAAGATGGTGAATCT
325 CAGACTGAAAAAGCAAGTTATATCCCCCTGAAGCAGAAGTGGAGCAGACTGAAGATGACAAATCT
* *
14078413 TATCTCCCTCAGTTTGCAATAGGATAGATTAAAGCCAGTAATCTCATCTCCCTGACGTTACAATG
390 TATCTCCCTAAGTTTGCAATAGGATAGATTAAAGCCAGTAATCTCATCTCCCTGAAGTTACAATG
* * * * *
14078478 GAGTAGATTCAGATGACAGATATTTTCTCTCTGAAGTTGCAGTATAGTAGATCGCATCAGATCTT
455 GAGCAGATTCAAATAACAGATATTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGATCTT
* * * ** * * *
14078543 ATCTTCTTGAGGTTGCAGCGGAGCAGACTGAAGATGGTGAATCTTATCTCCCTAAGTTTGCAGTA
520 ATCTCCCTGAGCTTGCAGCGGAGCAGACTGAAGATAATCAATCTTATCCCCCTAAGTTTGAAGTA
* *
14078608 GAGTAGATTAAATCCAGTAATCTC
585 GAGCAGATGAAAT-CAGTAATCTC
* * * * * *
14078632 ATCTCCCTGAAGTTGCAGCGGAGCGGATTCAAATAAGAGATCTTATCTCTCTGAAGTTGCAGTAG
1 ATCTCCCTGAAGTTGCAGCGGAGCAGATTCAAACAAGAGATCCTATCTCCCTAAAGTTGCAATAG
** * * * *
14078697 AGAAGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACTGAAGAAGCAAATCTTA
66 AGAAGATCAAATCAGATCTTATCTCCTTAAAGTTGCAGCAGAGCAGACT-AAGAAGCAAATCTTA
** *
14078762 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGTGGA
130 AATCCCTAAGCAGTAGTAGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGTGGA
* * *
14078827 GTAGATTAAAGCTAATAATCCCATCTCCCTAAAGTTGCAGTGGAGCGGATTCAAATGATAGATCC
195 GTAGATTAAAGCCAATAATACCATCTCCCTAAAGTTGCAGTGGAGCGGATTCAAATAATAGATCC
*
14078892 TATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGAG
260 TATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCAGAG
* *
14078957 CAGACTGAAAAAGCAAGTCT-TATCCCCTTGAAGCAGTAGTGGAGCAGA-TCGAAGATGACAAAT
325 CAGACTGAAAAAGCAAGT-TATATCCCCCTGAAGCAGAAGTGGAGCAGACT-GAAGATGACAAAT
* *
14079020 CTTATCTCCCTAAGTTTGCAGT-GGAGTAGATTAAAGCCAGTAATCTCATCTCCCTGAAGTTGCA
388 CTTATCTCCCTAAGTTTGCAATAGGA-TAGATTAAAGCCAGTAATCTCATCTCCCTGAAGTTACA
* * * *
14079084 GTGGAGCGGATTCAAATAATAGATCA-TATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGG
452 ATGGAGCAGATTCAAATAACAGAT-ATTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGA
*
14079148 TCTTATCTCCCTGAGCTTGCAGTGGAGCAGACTG-AGA-AATCAAGTCTTATCCCCCTGAAG-TT
516 TCTTATCTCCCTGAGCTTGCAGCGGAGCAGACTGAAGATAATCAA-TCTTATCCCCCT-AAGTTT
* * * *
14079210 GAAGTGGGGCAGACTGAAGAT-GGTGAATCTT
579 GAAGTAGAGCAGA-TGAA-ATCAGT-AATCTC
* * *
14079241 ATCTCCCTG-AGTTTGCAGTGGAGTAGATT-AAAGCCAGTA-ATCCTATCTCCCTAAAGTTGCAA
1 ATCTCCCTGAAG-TTGCAGCGGAGCAGATTCAAA-CAAG-AGATCCTATCTCCCTAAAGTTGCAA
* ** *
14079303 TGGAGCGGATTCAAATAACAGATCTTATCT-CTCTAAAGTTGCAGTAGAG
63 TAGAGAAGA-TCAAAT--CAGATCTTATCTCCT-TAAAGTTGCAGCAGAG
14079352 TAGATCGCAT
Statistics
Matches: 623, Mismatches: 80, Indels: 31
0.85 0.11 0.04
Matches are distributed among these distances:
607 3 0.00
608 37 0.06
609 549 0.88
610 9 0.01
611 2 0.00
612 23 0.04
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.28
Consensus pattern (607 bp):
ATCTCCCTGAAGTTGCAGCGGAGCAGATTCAAACAAGAGATCCTATCTCCCTAAAGTTGCAATAG
AGAAGATCAAATCAGATCTTATCTCCTTAAAGTTGCAGCAGAGCAGACTAAGAAGCAAATCTTAA
ATCCCTAAGCAGTAGTAGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGTGGAG
TAGATTAAAGCCAATAATACCATCTCCCTAAAGTTGCAGTGGAGCGGATTCAAATAATAGATCCT
ATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCAGAGC
AGACTGAAAAAGCAAGTTATATCCCCCTGAAGCAGAAGTGGAGCAGACTGAAGATGACAAATCTT
ATCTCCCTAAGTTTGCAATAGGATAGATTAAAGCCAGTAATCTCATCTCCCTGAAGTTACAATGG
AGCAGATTCAAATAACAGATATTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGATCTTA
TCTCCCTGAGCTTGCAGCGGAGCAGACTGAAGATAATCAATCTTATCCCCCTAAGTTTGAAGTAG
AGCAGATGAAATCAGTAATCTC
Found at i:14079640 original size:871 final size:868
Alignment explanation
Indices: 14078565--14080920 Score: 3709
Period size: 871 Copynumber: 2.7 Consensus size: 868
14078555 TTGCAGCGGA
* * *
14078565 GCAGACTGAAGATGGTGAATCTTATCTCCCTAAGTTTGCAGTAGAGTAGATTAAATCCAGTAATC
1 GCAGACTGAAGATTGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAATCCAGTAATC
* * *
14078630 TCATCTCCCTGAAGTTGCAGCGGAGCGGATTCAAATAAGAGATCTTATCTCTCTGAAGTTGCAGT
66 CCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCTTATCTCTCTGAAGTTGCAGT
*
14078695 AGAGAAGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACTGAAGAAGCAAATCT
131 AGAGTAGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACTGAAGAAGC-AATCT
14078760 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGTG
195 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGTG
* * * * *
14078825 GAGTAGATTAAAGCTAATAATCCCATCTCCCTAAAGTTGCAGTGGAGCGGATTCAAATGATAGAT
260 GAGTAGATTAAAGCCAGTAATCACATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGAT
14078890 CCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGG
325 CCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGG
*
14078955 AGCAGACTGAAAAAGCAAGTCTTATCCCCTTGAAGCAGTAGTGGAGCAGATCGAAGATGACAAAT
390 AGCAGACTGAAAAAGCAAGTCTTATCCCCTTGAAGCAGTAGTGGAGCAGATCGAAGATGGCAAAT
14079020 CTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCTCATCTCCCTGAAGTTGCAG
455 CTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCTCATCTCCCTGAAGTTGCAG
14079085 TGGAGCGGATTCAAATAATAGATCATATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
520 TGGAGCGGATTCAAATAATAGATCATATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTC
* * *
14079150 TTATCTCCCTGAGCTTGCAGTGGAGCAGACTGAGAAATCAAGTCTTATCCCCCTGAAGTTGAAGT
585 TTATCTCCCTGAG-TTGCAGCGGAGCAGACTAAGAAAGCAAGTCTTATCCCCCTGAAGTTGAAGT
*
14079215 GGGGCAGACTGAAGATGGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAAGCCAGTA
649 GGGGCAGACTGAAGATGGTGAATCTTATCTCCCTCAGTTTGCAGTGGAGTAGATTAAAGCCAGTA
*
14079280 ATCCTATCTCCCTAAAGTTGCAATGGAGCGGATTCAAATAACAGATCTTATCTCTCTAAAGTTGC
714 ATCC-ATCTCCCTAAAGTTGCAATGAAGCGGATTCAAATAACAGATCTTATCTCTCTAAAGTTGC
14079345 AGTAGAGTAGATCGCATCAAGTCTTAAATCCCTAAGGTTGCAGCGGAGAAGACTAAGAAAGCAAG
778 AGTAGAGTAGATCGCATCAAGTCTTAAATCCCTAAGGTTGCAGCGGAGAAGACTAAGAAAGCAAG
* * *
14079410 TCTTATCCCCTTGAAGTTGAAGTGGG
843 TCTTATCCCCCTAAAGTTGAAATGGG
* * * * *
14079436 GTAGACTGAAGATTGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTATATTTAATCTAGTTATC
1 GCAGACTGAAGATTGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAATCCAGTAATC
* * *
14079501 CCATCTCCCTAAAGTTGTAATGGAGCGGATTCAAATAACAGATCTTATCTCTCTGAAGTTGCAGT
66 CCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCTTATCTCTCTGAAGTTGCAGT
* * * * *
14079566 AGAGTAGATCGCATCACGTCTTATCTCCCTAAGATTGCAGCGGAGCAGACCGAAGAAGCAGATCT
131 AGAGTAGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACTGAAGAAGCA-ATCT
* *
14079631 TATCTCCCTAAGCAGTAGTGAAGCTA-ATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGTAGT
195 TATCTCCCTAAGCAGTAGTGGAGC-AGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGT
*
14079695 GGATTAGATTAAAGCCAGTAATCACATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGA
259 GGAGTAGATTAAAGCCAGTAATCACATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGA
* *
14079760 TCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAAGTCTTATCTCCCTGAGGTTACAGCG
324 TCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCG
* *
14079825 GAGCAGACTGAGAAAGCAAGTCTTATCCCCTTCAAGCAGTAGTGGAGCAGATCGAAGATGGCAAA
389 GAGCAGACTGAAAAAGCAAGTCTTATCCCCTTGAAGCAGTAGTGGAGCAGATCGAAGATGGCAAA
* *
14079890 TCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCCCATCTCCTTGAAGTTGCA
454 TCTTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCTCATCTCCCTGAAGTTGCA
* * * * *
14079955 ATAGAGCGGATTCAAATAACAGATCTTATCTCTCCGAAGTTGCAGTAGAGTAGATCGCATCAGGT
519 GTGGAGCGGATTCAAATAATAGATCATATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGT
* *
14080020 CTTATCTCCCTGAGGTTGCAGCGGAGCAGACTAAGAAAGCAAGTCTTATCCCCTTGAGGTTGAAG
584 CTTATCTCCCTGA-GTTGCAGCGGAGCAGACTAAGAAAGCAAGTCTTATCCCCCTGAAGTTGAAG
*
14080085 TGGGGCAGACTGAAGATGGTGAATCTTATCTCCCTCAGTTTGCAGTGGGGTAGATTAAAGCCAGT
648 TGGGGCAGACTGAAGATGGTGAATCTTATCTCCCTCAGTTTGCAGTGGAGTAGATTAAAGCCAGT
* * * *
14080150 AATTCATCTCCCTAAAGTTGCAATGAAGCTGATTCAAATAACAGCTCTTATCTCTCTGAAGTTGC
713 AATCCATCTCCCTAAAGTTGCAATGAAGCGGATTCAAATAACAGATCTTATCTCTCTAAAGTTGC
* * ** * * * *
14080215 AGTAGAGTAGATGGCATCAGGTCTTATCTCCCTGAGGTTGTAGCGGAGCAGACTGAGAAAGCAAG
778 AGTAGAGTAGATCGCATCAAGTCTTAAATCCCTAAGGTTGCAGCGGAGAAGACTAAGAAAGCAAG
14080280 TCTTATCCCCCTAAAGTTGAAATGGG
843 TCTTATCCCCCTAAAGTTGAAATGGG
* * *
14080306 GCAGACTGAAGA-TGATGAATCTTATCTCCATGAGTTTGTAGTGGAGTAGATTAAAGCCAGTAAT
1 GCAGACTGAAGATTG-TGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAATCCAGTAAT
* * *
14080370 CCCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATCCTATCTCTCTGAAGTTTCAG
65 CCCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCTTATCTCTCTGAAGTTGCAG
14080435 TAGAGTAGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACTG-AGAAAGCAAGT
130 TAGAGTAGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACTGAAG-AAGCAA-T
* *
14080499 CTTATC-CCCTTGAAGTAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTAAGTTTGC
193 CTTATCTCCC-T-AAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGC
* *
14080563 AGTGGAGTAGATTAAAGCCAGTAATCTCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAAC
256 AGTGGAGTAGATTAAAGCCAGTAATCACATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAAT
14080628 AGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCA
321 AGATCCTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCA
* ** * *
14080693 GCGGAGCAGACTGAGAAAA-CAAGTCTTATCCCCCTGAAGTTGAAGTGGGGCAGA-CTGAAGATG
386 GCGGAGCAGACTGA-AAAAGCAAGTCTTATCCCCTTGAAGCAGTAGTGGAGCAGATC-GAAGATG
** *
14080756 GTGAATCTTATCTCCCTGAA-TTTGCAGTGGAGTGGATTAAAGCCAGTAATCTCATCTCCCTGAA
449 GCAAATCTTATCTCCCT-AAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCTCATCTCCCTGAA
14080820 GTTGCAGTGGAGCGGATTCAAATAATAGATCCTATAGATCCTATCTCTCTGAAGTTGCAGTAGAG
513 GTTGCAGTGGAGCGGATTCAAATAATAGAT-C-----A---TATCTCTCTGAAGTTGCAGTAGAG
*
14080885 TAGATCGCATCAGGTCTTATTTCCCTGATGTTGCAG
569 TAGATCGCATCAGGTCTTATCTCCCTGA-GTTGCAG
14080921 ACTGAGAATA
Statistics
Matches: 1354, Mismatches: 110, Indels: 33
0.90 0.07 0.02
Matches are distributed among these distances:
869 8 0.01
870 312 0.23
871 969 0.72
872 8 0.01
880 57 0.04
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (868 bp):
GCAGACTGAAGATTGTGAATCTTATCTCCCTGAGTTTGCAGTGGAGTAGATTAAATCCAGTAATC
CCATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAACAGATCTTATCTCTCTGAAGTTGCAGT
AGAGTAGATCGCATCAGGTCTTATCTCCTTGAGGTTGCAGCGGAGCAGACTGAAGAAGCAATCTT
ATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATCTTATCTCCCTGAGTTTGCAGTGG
AGTAGATTAAAGCCAGTAATCACATCTCCCTGAAGTTGCAGTGGAGCGGATTCAAATAATAGATC
CTATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTGCAGCGGA
GCAGACTGAAAAAGCAAGTCTTATCCCCTTGAAGCAGTAGTGGAGCAGATCGAAGATGGCAAATC
TTATCTCCCTAAGTTTGCAGTGGAGTAGATTAAAGCCAGTAATCTCATCTCCCTGAAGTTGCAGT
GGAGCGGATTCAAATAATAGATCATATCTCTCTGAAGTTGCAGTAGAGTAGATCGCATCAGGTCT
TATCTCCCTGAGTTGCAGCGGAGCAGACTAAGAAAGCAAGTCTTATCCCCCTGAAGTTGAAGTGG
GGCAGACTGAAGATGGTGAATCTTATCTCCCTCAGTTTGCAGTGGAGTAGATTAAAGCCAGTAAT
CCATCTCCCTAAAGTTGCAATGAAGCGGATTCAAATAACAGATCTTATCTCTCTAAAGTTGCAGT
AGAGTAGATCGCATCAAGTCTTAAATCCCTAAGGTTGCAGCGGAGAAGACTAAGAAAGCAAGTCT
TATCCCCCTAAAGTTGAAATGGG
Found at i:14084190 original size:19 final size:19
Alignment explanation
Indices: 14084143--14084219 Score: 100
Period size: 19 Copynumber: 3.8 Consensus size: 19
14084133 AAATTAAATC
*
14084143 TCTAAGATTACAAAATCATA
1 TCTAAGATTAC-ATATCATA
14084163 TCTTCTAAGATTACATATCATA
1 ---TCTAAGATTACATATCATA
14084185 TCTAAGATTACATATCATA
1 TCTAAGATTACATATCATA
*
14084204 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
14084220 CTTGAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
19 34 0.65
22 7 0.13
23 11 0.21
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.36
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:14088846 original size:19 final size:19
Alignment explanation
Indices: 14088822--14088875 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
14088812 AATCATATCT
14088822 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
14088841 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
14088860 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
14088876 CCTGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.17, G:0.09, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:14088871 original size:38 final size:40
Alignment explanation
Indices: 14088799--14088875 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
14088789 AAATTAAATC
14088799 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTACAAAATCATA--TTCTAAGATTGCATATCATA
*
14088841 TCTAAGATTAC-ATATCATA-TCTAAGATTGCATATC
1 TCTAAGATTACAAAATCATATTCTAAGATTGCATATC
14088876 CCTGAAGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 16 0.47
41 7 0.21
42 11 0.32
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (40 bp):
TCTAAGATTACAAAATCATATTCTAAGATTGCATATCATA
Found at i:14088884 original size:36 final size:34
Alignment explanation
Indices: 14088815--14088886 Score: 83
Period size: 38 Copynumber: 2.0 Consensus size: 34
14088805 ATTACAAAAT
*
14088815 CATATCTTCTAAGATTGCATATCATATCTAAGATTA
1 CATATCTTCTAAGATTGCATATC--ACCTAAGATTA
14088851 CATATCATATCTAAGATTGCATATC-CCTGAAGATTA
1 CATATC-T-TCTAAGATTGCATATCACCT-AAGATTA
14088887 TGTTTTCATA
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
35 2 0.06
36 13 0.41
37 1 0.03
38 16 0.50
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (34 bp):
CATATCTTCTAAGATTGCATATCACCTAAGATTA
Found at i:14097539 original size:21 final size:23
Alignment explanation
Indices: 14097515--14097557 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
14097505 ATAAATCCAA
14097515 TATG-AAA-ATAAATCAAAATTT
1 TATGTAAATATAAATCAAAATTT
*
14097536 TATGTAAATATGAATCAAAATT
1 TATGTAAATATAAATCAAAATT
14097558 AAATGCACTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 4 0.21
22 3 0.16
23 12 0.63
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (23 bp):
TATGTAAATATAAATCAAAATTT
Found at i:14100197 original size:111 final size:111
Alignment explanation
Indices: 14100003--14100230 Score: 447
Period size: 111 Copynumber: 2.1 Consensus size: 111
14099993 TCTGGAGGAA
14100003 GAGCATAAGGCATCTGTAGCTGGTTTATCTTCAAATGAAGATCAAAAGCATGAAGAAATTGAGGA
1 GAGCATAAGGCATCTGTAGCTGGTTTATCTTCAAATGAAGATCAAAAGCATGAAGAAATTGAGGA
14100068 GGAACTCGCAATTACAGCAAGAAATGCCCTCAAACATAAGCGAGAG
66 GGAACTCGCAATTACAGCAAGAAATGCCCTCAAACATAAGCGAGAG
14100114 GAGCATAAGGCATCTGTAGCTGGTTTATCTTCAAATGAAGATCAAAAGCATGAAGAAATTGAGGA
1 GAGCATAAGGCATCTGTAGCTGGTTTATCTTCAAATGAAGATCAAAAGCATGAAGAAATTGAGGA
*
14100179 GGAACTCGCGATTACAGCAAGAAATGCCCTCAAACATAAGCGAGAG
66 GGAACTCGCAATTACAGCAAGAAATGCCCTCAAACATAAGCGAGAG
14100225 GAGCAT
1 GAGCAT
14100231 GATAAAGCCA
Statistics
Matches: 116, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
111 116 1.00
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (111 bp):
GAGCATAAGGCATCTGTAGCTGGTTTATCTTCAAATGAAGATCAAAAGCATGAAGAAATTGAGGA
GGAACTCGCAATTACAGCAAGAAATGCCCTCAAACATAAGCGAGAG
Found at i:14105196 original size:90 final size:87
Alignment explanation
Indices: 14105017--14105220 Score: 230
Period size: 90 Copynumber: 2.3 Consensus size: 87
14105007 TAAAGGGAGT
* *
14105017 AAAAATCCCTCAAACTTTTTC-AAAAAAAGCAATTAAGCTCTTTTTTTTTCCACTCAATTGAACA
1 AAAAAACCCTCAAACTTTTTCAAAAAAAAGCAATTAAGCCCTTTTTTTTTCCACTCAATTGAACA
* *
14105081 CTTGAACTTTTAAAATGCATAA
66 CTTGAACTCTCAAAATGCATAA
* * * *
14105103 AAAAAAGCCCTCAAACTTCTTCAAAAAAAAGCAATTAAGCCCTTACTTTTTTTTCACTTAATTGG
1 AAAAAA-CCCTCAAACTTTTTCAAAAAAAAGCAATTAAGCCCTT--TTTTTTTCCACTCAATTGA
** * * *
14105168 GTACTTGAACTCTCAGAATTCATCA
63 ACACTTGAACTCTCAAAATGCATAA
* **
14105193 AAAAAACACTCAAGTTTTTTCAAAAAAA
1 AAAAAACCCTCAAACTTTTTCAAAAAAA
14105221 TAATTAAGCC
Statistics
Matches: 97, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
86 5 0.05
87 14 0.14
88 20 0.21
89 18 0.19
90 40 0.41
ACGTcount: A:0.41, C:0.20, G:0.07, T:0.32
Consensus pattern (87 bp):
AAAAAACCCTCAAACTTTTTCAAAAAAAAGCAATTAAGCCCTTTTTTTTTCCACTCAATTGAACA
CTTGAACTCTCAAAATGCATAA
Found at i:14105289 original size:20 final size:20
Alignment explanation
Indices: 14105264--14105322 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 20
14105254 AAGAAATTAT
*
14105264 AAAAAATAATAAATTTTAGA
1 AAAAAATAATAAATTTAAGA
14105284 AAAAAA-AATTAAAATTTAAGA
1 AAAAAATAA-T-AAATTTAAGA
* *
14105305 AAAATATAAAAAATTTAA
1 AAAAAATAATAAATTTAA
14105323 AATTTATTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
19 2 0.06
20 15 0.45
21 14 0.42
22 2 0.06
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.27
Consensus pattern (20 bp):
AAAAAATAATAAATTTAAGA
Found at i:14105323 original size:27 final size:27
Alignment explanation
Indices: 14105285--14105337 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
14105275 AATTTTAGAA
14105285 AAAAAAATTAAAATTTAAGAAAAATAT
1 AAAAAAATTAAAATTTAAGAAAAATAT
* **
14105312 AAAAAATTTAAAATTTATTAAAAATA
1 AAAAAAATTAAAATTTAAGAAAAATA
14105338 GAATTTTTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (27 bp):
AAAAAAATTAAAATTTAAGAAAAATAT
Found at i:14105677 original size:18 final size:18
Alignment explanation
Indices: 14105566--14105680 Score: 67
Period size: 18 Copynumber: 6.2 Consensus size: 18
14105556 TGAACAAAAC
14105566 TTATATTTCTTTAC-ATTT
1 TTATATTT-TTTACAATTT
14105584 TGTATAATTTTCTTACGAATTT
1 T-TAT-ATTTT-TTAC-AATTT
* * *
14105606 ATAAAATTTTATA-AATATT
1 -TTATATTTTTTACAAT-TT
*
14105625 TT-TA-TTTCTACATATTT
1 TTATATTTTTTACA-ATTT
*
14105642 TTATATTTTTTACGATTT
1 TTATATTTTTTACAATTT
**
14105660 TTATATTTTTTTTAATTT
1 TTATATTTTTTACAATTT
14105678 TTA
1 TTA
14105681 ATAAATTTTT
Statistics
Matches: 75, Mismatches: 11, Indels: 22
0.69 0.10 0.20
Matches are distributed among these distances:
16 5 0.07
17 6 0.08
18 31 0.41
19 12 0.16
20 10 0.13
21 5 0.07
22 5 0.07
23 1 0.01
ACGTcount: A:0.29, C:0.06, G:0.03, T:0.63
Consensus pattern (18 bp):
TTATATTTTTTACAATTT
Found at i:14105699 original size:26 final size:26
Alignment explanation
Indices: 14105670--14105722 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14105660 TTATATTTTT
14105670 TTTAA-TTTTTAATAAATTTTTAATAA
1 TTTAATTTTTTAATAAA-TTTTAATAA
*
14105696 TTTAATTTTTTATTAAATTTTAATAA
1 TTTAATTTTTTAATAAATTTTAATAA
14105722 T
1 T
14105723 ATTTATAGCT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (26 bp):
TTTAATTTTTTAATAAATTTTAATAA
Found at i:14106290 original size:25 final size:25
Alignment explanation
Indices: 14106261--14106331 Score: 88
Period size: 26 Copynumber: 2.8 Consensus size: 25
14106251 AATGAAATAA
* * *
14106261 AGAAAGAGAGAAAGCAAAACGAAAC
1 AGAAAGAAAGAAAGAAAAACAAAAC
* *
14106286 AGAAAGGAAAGAAAGAAAAAAAAAAG
1 AGAAA-GAAAGAAAGAAAAACAAAAC
14106312 AGAAAGAAAGAAAGAAAAAC
1 AGAAAGAAAGAAAGAAAAAC
14106332 TCAGGGCCTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
25 19 0.49
26 20 0.51
ACGTcount: A:0.72, C:0.06, G:0.23, T:0.00
Consensus pattern (25 bp):
AGAAAGAAAGAAAGAAAAACAAAAC
Found at i:14106301 original size:4 final size:4
Alignment explanation
Indices: 14106249--14106328 Score: 54
Period size: 4 Copynumber: 19.0 Consensus size: 4
14106239 ATAATAAAAT
* * * *
14106249 GAAA TGAAA TAAA GAAA GAGA GAAA GCAA -AAC GAAACA GAAA GGAAA
1 GAAA -GAAA GAAA GAAA GAAA GAAA GAAA GAAA G-AA-A GAAA -GAAA
* *
14106296 GAAA GAAA AAAA AAAGA GAAA GAAA GAAA GAAA
1 GAAA GAAA GAAA GAA-A GAAA GAAA GAAA GAAA
14106329 AACTCAGGGC
Statistics
Matches: 60, Mismatches: 10, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
3 1 0.02
4 43 0.72
5 15 0.25
6 1 0.02
ACGTcount: A:0.71, C:0.04, G:0.23, T:0.03
Consensus pattern (4 bp):
GAAA
Found at i:14106317 original size:21 final size:20
Alignment explanation
Indices: 14106288--14106330 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 20
14106278 AACGAAACAG
14106288 AAAGGAAAGAAAGAAAAAAA
1 AAAGGAAAGAAAGAAAAAAA
14106308 AAAGAGAAAGAAAGAAAGAAAA
1 AAAG-GAAAGAAAGAAA-AAAA
14106330 A
1 A
14106331 CTCAGGGCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 4 0.19
21 12 0.57
22 5 0.24
ACGTcount: A:0.79, C:0.00, G:0.21, T:0.00
Consensus pattern (20 bp):
AAAGGAAAGAAAGAAAAAAA
Found at i:14106741 original size:19 final size:20
Alignment explanation
Indices: 14106717--14106756 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
14106707 GAATTTAAAC
* *
14106717 AAATATTGAGTAA-AAATTG
1 AAATATTCAATAAGAAATTG
14106736 AAATATTCAATAAGAAATTG
1 AAATATTCAATAAGAAATTG
14106756 A
1 A
14106757 GTTGTGTTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.55, C:0.03, G:0.12, T:0.30
Consensus pattern (20 bp):
AAATATTCAATAAGAAATTG
Found at i:14107018 original size:2 final size:2
Alignment explanation
Indices: 14107011--14107070 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
14107001 TTGATTTAAA
14107011 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
14107053 TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG
14107071 ACACTGGGTG
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:14111534 original size:14 final size:15
Alignment explanation
Indices: 14111512--14111588 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
14111502 CAATCAAACA
14111512 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
14111526 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
14111541 ACAGAAAAGTAAAACATTTT
1 CCAGAAAA-T----CATTTT
14111561 CCAG-AAATCATTTT
1 CCAGAAAATCATTTT
* *
14111575 ACGGAAAA-CATTTT
1 CCAGAAAATCATTTT
14111589 ACTGGCAATC
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 22 0.44
15 14 0.28
16 1 0.02
18 1 0.02
19 3 0.06
20 9 0.18
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:14111553 original size:20 final size:20
Alignment explanation
Indices: 14111528--14111567 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14111518 AATATTTTCC
*
14111528 AGTAAATCATTTTACAGAAA
1 AGTAAAACATTTTACAGAAA
*
14111548 AGTAAAACATTTTCCAGAAA
1 AGTAAAACATTTTACAGAAA
14111568 TCATTTTACG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (20 bp):
AGTAAAACATTTTACAGAAA
Found at i:14111573 original size:34 final size:35
Alignment explanation
Indices: 14111516--14111582 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
14111506 CAAACACCAG
*
14111516 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
14111551 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
14111583 CATTTTACTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:14111589 original size:14 final size:14
Alignment explanation
Indices: 14111551--14111590 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
14111541 ACAGAAAAGT
*
14111551 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
14111565 AAATCATTTTACGG
1 AAAACATTTTACAG
14111579 AAAACATTTTAC
1 AAAACATTTTAC
14111591 TGGCAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:14112474 original size:41 final size:41
Alignment explanation
Indices: 14112374--14112775 Score: 398
Period size: 41 Copynumber: 9.6 Consensus size: 41
14112364 TTACACGGTA
* ** * *
14112374 GAATCAGCACTTAGCAACCACCTCATGTTCAAAGGATCCCGGTG
1 GAATCAGCACTTAGCAACCACCTTATAATC-AATGAT-ACGG-G
14112418 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGG
1 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGG
* * *
14112459 GAATCAGCACATAGCAACC-CCTTTCACAATCAAGGATACGGTG
1 GAATCAGCACTTAGCAACCACC-TT-ATAATCAATGATACGG-G
* *
14112502 GAATCAACACTTAGCAACCACCTTATAATCAATGAGACGGG
1 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGG
* * *
14112543 GAATCAGCACATAGCAACC-CCTTTCACAATCAAGGATACGGTG
1 GAATCAGCACTTAGCAACCACC-TT-ATAATCAATGATACGG-G
*
14112586 GAATCAGCACTTAGCAACCACCTTATAATCAATGATATGGG
1 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGG
* * * * * *
14112627 GAATCAGCACATAGCAACC-CCTTTCACAATAAAGGATATTGTG
1 GAATCAGCACTTAGCAACCACC-TT-ATAATCAATGATA-CGGG
* *
14112670 GAATAAGCACTTAGAAACCACCTTATAATCAATGATACGGG
1 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGG
* * * * * **
14112711 GAATCAGCACATAGCAACCTCTTTTTGATCAATGATTTGGG
1 GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGG
*
14112752 GAATCTGCACTTAGCAACC-CCTTA
1 GAATCAGCACTTAGCAACCACCTTA
14112776 CATTCAAAGA
Statistics
Matches: 298, Mismatches: 48, Indels: 28
0.80 0.13 0.07
Matches are distributed among these distances:
40 9 0.03
41 113 0.38
42 76 0.26
43 67 0.22
44 33 0.11
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.22
Consensus pattern (41 bp):
GAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGG
Found at i:14112521 original size:84 final size:84
Alignment explanation
Indices: 14112413--14112734 Score: 547
Period size: 84 Copynumber: 3.8 Consensus size: 84
14112403 CAAAGGATCC
*
14112413 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
1 CGGTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
14112478 CCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
*
14112497 CGGTGGAATCAACACTTAGCAACCACCTTATAATCAATGAGACGGGGAATCAGCACATAGCAACC
1 CGGTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
14112562 CCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
* *
14112581 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATATGGGGAATCAGCACATAGCAACC
1 CGGTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
*
14112646 CCTTTCACAATAAAGGATA
66 CCTTTCACAATCAAGGATA
** *
14112665 TTGTGGAAT-AAGCACTTAGAAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAAC
1 CGGTGGAATCAA-CACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAAC
*
14112729 CTCTTT
65 CCCTTT
14112735 TTGATCAATG
Statistics
Matches: 225, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
83 1 0.00
84 224 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (84 bp):
CGGTGGAATCAACACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
CCTTTCACAATCAAGGATA
Found at i:14119703 original size:35 final size:35
Alignment explanation
Indices: 14119664--14119769 Score: 167
Period size: 35 Copynumber: 3.0 Consensus size: 35
14119654 GTCCAATCAT
14119664 AACACGCCAATGCTCATAAGAGCTAATCCAACCGA
1 AACACGCCAATGCTCATAAGAGCTAATCCAACCGA
* * *
14119699 AACACGCCAATGCTCATAAGAGTTAATTCAACTGA
1 AACACGCCAATGCTCATAAGAGCTAATCCAACCGA
* *
14119734 AACACGCTAATGCTCATAAAAGCTAATCCAACCGA
1 AACACGCCAATGCTCATAAGAGCTAATCCAACCGA
14119769 A
1 A
14119770 GTACGCAAAA
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 63 1.00
ACGTcount: A:0.42, C:0.27, G:0.13, T:0.18
Consensus pattern (35 bp):
AACACGCCAATGCTCATAAGAGCTAATCCAACCGA
Found at i:14121265 original size:32 final size:33
Alignment explanation
Indices: 14121223--14121286 Score: 87
Period size: 32 Copynumber: 2.0 Consensus size: 33
14121213 TTTTTTATTG
14121223 GCCTAATAACAAAATTTT-CCA-TTCAATATTTA
1 GCCTAATAAC-AAATTTTACCATTTCAATATTTA
* *
14121255 GCCTAGTAACATATTTTACCATTTCAATATTT
1 GCCTAATAACAAATTTTACCATTTCAATATTT
14121287 GTATGTTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 6 0.21
32 12 0.43
33 10 0.36
ACGTcount: A:0.36, C:0.19, G:0.05, T:0.41
Consensus pattern (33 bp):
GCCTAATAACAAATTTTACCATTTCAATATTTA
Found at i:14121812 original size:39 final size:39
Alignment explanation
Indices: 14121758--14121834 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
14121748 TATGATTATA
14121758 TAATCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
1 TAATCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
* *
14121797 TAATCTTAGAGTTCTAATTGTATATAGCTTTTAATTGT
1 TAATCTTAGAGTTCTAATTGTATACAGCTTCTAATTGT
14121835 AGCCATTGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.47
Consensus pattern (39 bp):
TAATCTTAGAGTTCTAATTGTATACAGCTTCTAATTGTG
Found at i:14125353 original size:13 final size:13
Alignment explanation
Indices: 14125335--14125359 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14125325 TATTTTAATA
14125335 TTATTTTGTGTGT
1 TTATTTTGTGTGT
14125348 TTATTTTGTGTG
1 TTATTTTGTGTG
14125360 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:14126384 original size:26 final size:24
Alignment explanation
Indices: 14126355--14126404 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
14126345 TGAGCTGTTT
14126355 TTGGATGAATTATAATTAAAAATATG
1 TTGGATGAA--ATAATTAAAAATATG
* *
14126381 TTGGTTGAAATAATTAAAAGTATG
1 TTGGATGAAATAATTAAAAATATG
14126405 AGTGAATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 14 0.64
26 8 0.36
ACGTcount: A:0.44, C:0.00, G:0.18, T:0.38
Consensus pattern (24 bp):
TTGGATGAAATAATTAAAAATATG
Found at i:14126815 original size:75 final size:75
Alignment explanation
Indices: 14126679--14126820 Score: 169
Period size: 75 Copynumber: 1.9 Consensus size: 75
14126669 TGCAAATCTA
* * ** * * *
14126679 CATGTATATGTTCTTGTATTGAATTTAGGTATGCCATTTATACAAGTTTATATGGGTTTCGACTA
1 CATGTATATGTTCTTGTAATGAATTTAAGTATGAAATTTATACAAGTATATAGGGGGTTCGACTA
14126744 TGCAATTATG
66 TGCAATTATG
* * * *
14126754 CATGTATATGTTCTTGTAATGAGTTTAAGTATGAAATTTATATATGTATA-AGGGAGGTTCGATT
1 CATGTATATGTTCTTGTAATGAATTTAAGTATGAAATTTATACAAGTATATAGGG-GGTTCGACT
14126818 ATG
65 ATG
14126821 TATGTATGTT
Statistics
Matches: 55, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
74 3 0.05
75 52 0.95
ACGTcount: A:0.29, C:0.08, G:0.20, T:0.43
Consensus pattern (75 bp):
CATGTATATGTTCTTGTAATGAATTTAAGTATGAAATTTATACAAGTATATAGGGGGTTCGACTA
TGCAATTATG
Found at i:14127202 original size:41 final size:43
Alignment explanation
Indices: 14127140--14127247 Score: 143
Period size: 41 Copynumber: 2.6 Consensus size: 43
14127130 ATTTTCAGTG
* * *
14127140 ACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGA-
1 ACATTATTCAGACTATACGTCTAGCAGACTTAATGCCGGTGAC
14127182 A-ATTATTCAGACTATACGTCTAGCAGACTTAATGCCGGTGAC
1 ACATTATTCAGACTATACGTCTAGCAGACTTAATGCCGGTGAC
* *
14127224 ACATT-TT-GGACTATAAGTCTAGCA
1 ACATTATTCAGACTATACGTCTAGCA
14127248 AGCTCAAGAG
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
41 52 0.88
42 4 0.07
43 3 0.05
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (43 bp):
ACATTATTCAGACTATACGTCTAGCAGACTTAATGCCGGTGAC
Found at i:14127504 original size:31 final size:31
Alignment explanation
Indices: 14127466--14127531 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
14127456 GATAGATATT
* *
14127466 TATATATATGTATGCATTCGGCATAGGTGGA
1 TATATATATGTATGCATTCGACATAGGTGAA
14127497 TATATATATGTATGCATTCGACATAGGTGAA
1 TATATATATGTATGCATTCGACATAGGTGAA
14127528 TATA
1 TATA
14127532 AGTGTATATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.36
Consensus pattern (31 bp):
TATATATATGTATGCATTCGACATAGGTGAA
Found at i:14127505 original size:35 final size:35
Alignment explanation
Indices: 14127460--14127552 Score: 92
Period size: 31 Copynumber: 2.8 Consensus size: 35
14127450 GCAGTTGATA
*
14127460 GATATTTATATATATGTATGCATTCGGCATAGGTG
1 GATATATATATATATGTATGCATTCGGCATAGGTG
*
14127495 G----ATATATATATGTATGCATTCGACATAGGTG
1 GATATATATATATATGTATGCATTCGGCATAGGTG
* *
14127526 AATATA-AGTGTATATG--TGCATTCGGCA
1 GATATATA-TATATATGTATGCATTCGGCA
14127553 CTTATGGTTG
Statistics
Matches: 48, Mismatches: 5, Indels: 12
0.74 0.08 0.18
Matches are distributed among these distances:
31 28 0.58
33 10 0.21
34 1 0.02
35 9 0.19
ACGTcount: A:0.31, C:0.10, G:0.23, T:0.37
Consensus pattern (35 bp):
GATATATATATATATGTATGCATTCGGCATAGGTG
Found at i:14133110 original size:13 final size:13
Alignment explanation
Indices: 14133092--14133116 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14133082 TATTTTAATA
14133092 TTATTTTGTGTGT
1 TTATTTTGTGTGT
14133105 TTATTTTGTGTG
1 TTATTTTGTGTG
14133117 CATTTGATTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.00, G:0.24, T:0.68
Consensus pattern (13 bp):
TTATTTTGTGTGT
Found at i:14134139 original size:26 final size:24
Alignment explanation
Indices: 14134110--14134159 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
14134100 TGAGCTGTTT
14134110 TTGGATGAATTATAATTAAAAATATG
1 TTGGATGAA--ATAATTAAAAATATG
* *
14134136 TTGGTTGAAATAATTAAAAGTATG
1 TTGGATGAAATAATTAAAAATATG
14134160 AGTGAATTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 14 0.64
26 8 0.36
ACGTcount: A:0.44, C:0.00, G:0.18, T:0.38
Consensus pattern (24 bp):
TTGGATGAAATAATTAAAAATATG
Found at i:14134957 original size:41 final size:43
Alignment explanation
Indices: 14134895--14135002 Score: 143
Period size: 41 Copynumber: 2.6 Consensus size: 43
14134885 ATTGTCAGTG
* * *
14134895 ACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGA-
1 ACATTATTCAGACTATACGTCTAGCAGACTTAATGCCGGTGAC
14134937 A-ATTATTCAGACTATACGTCTAGCAGACTTAATGCCGGTGAC
1 ACATTATTCAGACTATACGTCTAGCAGACTTAATGCCGGTGAC
* *
14134979 ACATT-TT-GGACTATAAGTCTAGCA
1 ACATTATTCAGACTATACGTCTAGCA
14135003 AGCTCAAGAG
Statistics
Matches: 59, Mismatches: 5, Indels: 5
0.86 0.07 0.07
Matches are distributed among these distances:
41 52 0.88
42 4 0.07
43 3 0.05
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (43 bp):
ACATTATTCAGACTATACGTCTAGCAGACTTAATGCCGGTGAC
Found at i:14135259 original size:31 final size:31
Alignment explanation
Indices: 14135221--14135286 Score: 114
Period size: 31 Copynumber: 2.1 Consensus size: 31
14135211 GATAGATATT
* *
14135221 TATATATATGTATGCATTCGGCATAGGTGGA
1 TATATATATGTATGCATTCGACATAGGTGAA
14135252 TATATATATGTATGCATTCGACATAGGTGAA
1 TATATATATGTATGCATTCGACATAGGTGAA
14135283 TATA
1 TATA
14135287 AGTGTAGATG
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.36
Consensus pattern (31 bp):
TATATATATGTATGCATTCGACATAGGTGAA
Found at i:14143496 original size:104 final size:103
Alignment explanation
Indices: 14143185--14143562 Score: 409
Period size: 104 Copynumber: 3.5 Consensus size: 103
14143175 GAAAATTGGA
* * * **
14143185 AAAAAAGGAAAAAAAAAATTTGAGTGCTGGCCTGTCAATGGTTGGCACCCCCTTTATATGAATTT
1 AAAAAAGTAAAAAAAAAATTTG-G-G-TGGCCTGGCAATGGTCGGCACCCCCTTTATACCAATTT
** * * * * *** *
14143250 TTTTTCAAGTGTTGGTCTATCAATTATCGGCACCAGAATACG
63 TTTTTTTACT-TTTGTGTGTCAATGGCCGGCACCAGTATACG
* * * * *
14143292 -AAAAAGTAAAAAAAATTATTTTTTTGGGTGGCCTGGCAATAGCCGGCACCCCCTTTGTACAATA
1 AAAAAAGTAAAAAAAA--A---ATTTGGGTGGCCTGGCAATGGTCGGCACCCCCTTTATAC--CA
*
14143356 ATTTTTTTTTTACTTTTGTTGTGTCAATGGCTGGCACCAGTATACG
59 ATTTTTTTTTTACTTTTG-TGTGTCAATGGCCGGCACCAGTATACG
14143402 AAAAAAGTAAAAAAAAAATTTGGGTGGCCTGGCAATGGTCGGCACCCCCTTTATACCAATTTTTT
1 AAAAAAGTAAAAAAAAAATTTGGGTGGCCTGGCAATGGTCGGCACCCCCTTTATACCAATTTTTT
14143467 TTTTACTTTTAGTGTGTCAATGGCCGGCACCAGTATACG
66 TTTTACTTTT-GTGTGTCAATGGCCGGCACCAGTATACG
*
14143506 AAAAAAGTAAAAAAAAAATTTGGGGTGGCTTGGCAATGG-CTGGCACCCCCTTTATAC
1 AAAAAAGTAAAAAAAAAATTT-GGGTGGCCTGGCAATGGTC-GGCACCCCCTTTATAC
14143563 AAAAAAAAAT
Statistics
Matches: 232, Mismatches: 27, Indels: 26
0.81 0.09 0.09
Matches are distributed among these distances:
104 66 0.28
105 33 0.14
106 49 0.21
108 27 0.12
109 5 0.02
110 33 0.14
111 19 0.08
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (103 bp):
AAAAAAGTAAAAAAAAAATTTGGGTGGCCTGGCAATGGTCGGCACCCCCTTTATACCAATTTTTT
TTTTACTTTTGTGTGTCAATGGCCGGCACCAGTATACG
Found at i:14144037 original size:30 final size:30
Alignment explanation
Indices: 14144002--14144060 Score: 100
Period size: 30 Copynumber: 2.0 Consensus size: 30
14143992 AAAAATTCTC
*
14144002 AAATTTCTCCCTAAATTTCTCAAAGCTCTT
1 AAATTTCTCACTAAATTTCTCAAAGCTCTT
*
14144032 AAATTTCTCATTAAATTTCTCAAAGCTCT
1 AAATTTCTCACTAAATTTCTCAAAGCTCT
14144061 CTTTAATTAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.32, C:0.24, G:0.03, T:0.41
Consensus pattern (30 bp):
AAATTTCTCACTAAATTTCTCAAAGCTCTT
Found at i:14145816 original size:18 final size:18
Alignment explanation
Indices: 14145793--14145835 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
14145783 TGCCAGGTGC
*
14145793 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
*
14145811 GTATCCTAACGCTTATAT
1 GTATCCTAACCCTTATAT
*
14145829 GTTTCCT
1 GTATCCT
14145836 TTTCTCAGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.21, C:0.26, G:0.12, T:0.42
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:14148079 original size:126 final size:126
Alignment explanation
Indices: 14147853--14148247 Score: 603
Period size: 126 Copynumber: 3.1 Consensus size: 126
14147843 GCCCAAACAT
*
14147853 GAACTACTATAGAAAAAGAGCGTCGACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCGACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATC
* * *
14147918 CTGCTTGAAGCATTTTTGATACTATTTGTTTAGAACCATCTTCTCAAAATTATTTTTTTAG
66 CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAACCATCTTCTCAAAATTATTTTTTCAG
*
14147979 GAACTACTGTAGAAAAAGAGCGTCGACGTGAGAGCTTTTTTCATCAATTTTGCTGACAGTGCATC
1 GAACTACTGTAGAAAAAGAGCGTCGACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATC
* * ** *
14148044 CTGCTTGAAGCATTTTTGACACCATTTGCTCAGAACTGTCTTCTCAAAATTATTTTTTCAA
66 CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAACCATCTTCTCAAAATTATTTTTTCAG
* * * *
14148105 GAACTACTTTAGAAAAAGAGCGCCCACGTGGGAGCTTTTTTCAGT-AATTTTGCTGACAATGCAT
1 GAACTACTGTAGAAAAAGAGCGTCGACGTGGGAGCTTTTTTCA-TCAATTTTGCTGACAGTGCAT
* * * * *
14148169 TCTGCTTGAAGCATTTTTCACACTATTTGTTCAGAACCATATTATCAAATTTATTTTTTCAG
65 CCTGCTTGAAGCATTTTTGACACTATTTGTTCAGAACCATCTTCTCAAAATTATTTTTTCAG
14148231 GAACTACTGTAGAAAAA
1 GAACTACTGTAGAAAAA
14148248 AAAATCCTTA
Statistics
Matches: 242, Mismatches: 26, Indels: 2
0.90 0.10 0.01
Matches are distributed among these distances:
126 241 1.00
127 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (126 bp):
GAACTACTGTAGAAAAAGAGCGTCGACGTGGGAGCTTTTTTCATCAATTTTGCTGACAGTGCATC
CTGCTTGAAGCATTTTTGACACTATTTGTTCAGAACCATCTTCTCAAAATTATTTTTTCAG
Found at i:14148460 original size:43 final size:43
Alignment explanation
Indices: 14148413--14148504 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 43
14148403 TTAAAAATTT
* * *
14148413 CTAAAACC-TAGAACCCTAAATTATTTTAACAAAACTCTAAACC
1 CTAAAACCTTACAAACCTAAATTATTTTAACAAAACCCT-AACC
14148456 CT-AAACCTTACAAACCTAAATTATTTTAACAAAACCCTAACC
1 CTAAAACCTTACAAACCTAAATTATTTTAACAAAACCCTAACC
*
14148498 TTAAAAC
1 CTAAAAC
14148505 TCCTAAACCA
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
42 10 0.23
43 33 0.77
ACGTcount: A:0.47, C:0.26, G:0.01, T:0.26
Consensus pattern (43 bp):
CTAAAACCTTACAAACCTAAATTATTTTAACAAAACCCTAACC
Found at i:14149372 original size:31 final size:31
Alignment explanation
Indices: 14149337--14149399 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
14149327 AAAAAACCTT
* * *
14149337 AATAGTTTAGTGACTTAAATAAAAACGTTTG
1 AATAGTTCAATGAATTAAATAAAAACGTTTG
* *
14149368 AATAGTTCAATGAATTAAATGAAAACTTTTG
1 AATAGTTCAATGAATTAAATAAAAACGTTTG
14149399 A
1 A
14149400 CTAATTAAGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.35
Consensus pattern (31 bp):
AATAGTTCAATGAATTAAATAAAAACGTTTG
Found at i:14150001 original size:14 final size:14
Alignment explanation
Indices: 14149966--14149995 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
14149956 TAATAAAATT
14149966 TTTAAATT-TTATA
1 TTTAAATTATTATA
14149979 TTTAAATTATTATA
1 TTTAAATTATTATA
14149993 TTT
1 TTT
14149996 CCATTAATCA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.50
14 8 0.50
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
TTTAAATTATTATA
Found at i:14150480 original size:9 final size:9
Alignment explanation
Indices: 14150430--14150483 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
14150420 ATAATTTCTC
*
14150430 ATAAAAATA
1 ATAAAAATT
14150439 ATAAAAATT
1 ATAAAAATT
* *
14150448 ATTAAGATT
1 ATAAAAATT
*
14150457 GATATAAATTT
1 -ATA-AAAATT
14150468 ATAAAAATT
1 ATAAAAATT
14150477 ATAAAAA
1 ATAAAAA
14150484 CCAAATATAT
Statistics
Matches: 36, Mismatches: 7, Indels: 4
0.77 0.15 0.09
Matches are distributed among these distances:
9 27 0.75
10 5 0.14
11 4 0.11
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (9 bp):
ATAAAAATT
Found at i:14150589 original size:20 final size:19
Alignment explanation
Indices: 14150553--14150596 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
14150543 AAAATTTTAT
* *
14150553 TAAAAAAACTTATAAATAA
1 TAAAAAAACATAAAAATAA
*
14150572 TAAAAAAATCATAAAAATTA
1 TAAAAAAA-CATAAAAATAA
14150592 TAAAA
1 TAAAA
14150597 TTGATGTAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.70, C:0.05, G:0.00, T:0.25
Consensus pattern (19 bp):
TAAAAAAACATAAAAATAA
Found at i:14154686 original size:20 final size:20
Alignment explanation
Indices: 14154661--14154707 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
14154651 CTGAGATCAA
14154661 TTTGGAACAAAACAT-AAAAT
1 TTTGGAA-AAAACATGAAAAT
*
14154681 TTTGG-AAAAACTTGAAAAT
1 TTTGGAAAAAACATGAAAAT
14154700 TTTGGAAA
1 TTTGGAAA
14154708 CAGGGGTCAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
18 6 0.25
19 11 0.46
20 7 0.29
ACGTcount: A:0.49, C:0.06, G:0.15, T:0.30
Consensus pattern (20 bp):
TTTGGAAAAAACATGAAAAT
Found at i:14161551 original size:27 final size:28
Alignment explanation
Indices: 14161521--14161574 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 28
14161511 TGAAATTCAT
*
14161521 ACTTTAATTATTAAACA-A-TTAATTTTC
1 ACTTAAATTATT-AACATATTTAATTTTC
14161548 ACTTAAATTATTAACATATTTAATTTT
1 ACTTAAATTATTAACATATTTAATTTT
14161575 AATTATTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
26 4 0.17
27 12 0.50
28 8 0.33
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (28 bp):
ACTTAAATTATTAACATATTTAATTTTC
Found at i:14164366 original size:23 final size:22
Alignment explanation
Indices: 14164315--14164359 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 22
14164305 ATCCATGCAC
*
14164315 ATATACATGTATTTTTTATAATAT
1 ATATACA--TATTTTTTAAAATAT
14164339 ATATACATATTTTTTAGAAAT
1 ATATACATATTTTTTA-AAAT
14164360 TATTATAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 9 0.47
23 3 0.16
24 7 0.37
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (22 bp):
ATATACATATTTTTTAAAATAT
Found at i:14166092 original size:42 final size:41
Alignment explanation
Indices: 14165904--14166091 Score: 223
Period size: 42 Copynumber: 4.5 Consensus size: 41
14165894 GCGTTTACAG
* * * *
14165904 AAAAAAACGCCGCTAAAGAACATGATCTTTCGCAGCGCTTA
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTA
* * *
14165945 AAAAAAGACGCCGCTAAATATCATGTTCTTTAGCGGCACTTCT
1 AAAAAA-ACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTT-A
* * *
14165988 AAAAAGACACCGCTAAAGATCATGTTCTTTAGCGGCGCTTTC
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGC-TTA
* *
14166030 AAAAAAATGCCGCTAAAGATTATGTTCTTTAGCGGCGCTTA
1 AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTA
*
14166071 AAGAAAAATGCCGCTAAAGAT
1 AA-AAAAACGCCGCTAAAGAT
14166092 TGCTTGGTAA
Statistics
Matches: 126, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
41 10 0.08
42 109 0.87
43 7 0.06
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.24
Consensus pattern (41 bp):
AAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTA
Found at i:14166593 original size:21 final size:21
Alignment explanation
Indices: 14166569--14166640 Score: 110
Period size: 21 Copynumber: 3.4 Consensus size: 21
14166559 TTATTTTGAA
14166569 CCTCTGCTTCTCTCGCTGCAG
1 CCTCTGCTTCTCTCGCTGCAG
14166590 CCTCTGCTTCTCTCGCTGCAG
1 CCTCTGCTTCTCTCGCTGCAG
* *
14166611 CCTCTGCTTCCCTCGTTGCCA-
1 CCTCTGCTTCTCTCGCTG-CAG
14166632 CCTCTGCTT
1 CCTCTGCTT
14166641 TAAGTTGTAG
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
21 46 0.96
22 2 0.04
ACGTcount: A:0.04, C:0.44, G:0.17, T:0.35
Consensus pattern (21 bp):
CCTCTGCTTCTCTCGCTGCAG
Found at i:14172160 original size:9 final size:9
Alignment explanation
Indices: 14172143--14172638 Score: 405
Period size: 9 Copynumber: 56.8 Consensus size: 9
14172133 TATGTATTAA
*
14172143 GTAAATTAT
1 GTAAGTTAT
14172152 GTAAGTTAT
1 GTAAGTTAT
*
14172161 GTACGTGTA-
1 GTAAGT-TAT
14172170 -TAAGTTAT
1 GTAAGTTAT
14172178 GTAAGTTAT
1 GTAAGTTAT
*
14172187 GT-A-TTAA
1 GTAAGTTAT
*
14172194 GTAAGCTAT
1 GTAAGTTAT
*
14172203 GTAAGTTGT
1 GTAAGTTAT
14172212 GT-A-TTAT
1 GTAAGTTAT
14172219 GTAAGTTAT
1 GTAAGTTAT
14172228 GTAAGTTAT
1 GTAAGTTAT
** *
14172237 CAAAGTAAT
1 GTAAGTTAT
*
14172246 GTATGTTAT
1 GTAAGTTAT
14172255 GTAAG-T-T
1 GTAAGTTAT
14172262 GTAAGTTAT
1 GTAAGTTAT
*
14172271 -TATGTATTAT
1 GTAAG--TTAT
14172281 GTAAGTTAT
1 GTAAGTTAT
14172290 GTAAGTTAT
1 GTAAGTTAT
14172299 GTAAGTTAAAT
1 GTAAGTT--AT
14172310 GT-A-TTAT
1 GTAAGTTAT
*
14172317 GTAGGTTAT
1 GTAAGTTAT
*
14172326 GTAAGTTGT
1 GTAAGTTAT
*
14172335 GTAAGATAT
1 GTAAGTTAT
*
14172344 TTAAGTTAT
1 GTAAGTTAT
*
14172353 GTAAGTTTT
1 GTAAGTTAT
14172362 GT-A-TTAT
1 GTAAGTTAT
14172369 GTAAGTTAT
1 GTAAGTTAT
14172378 GTAAGTTAT
1 GTAAGTTAT
** *
14172387 CAAAGTAAT
1 GTAAGTTAT
*
14172396 GTATGTTAT
1 GTAAGTTAT
14172405 GTAAG-T-T
1 GTAAGTTAT
14172412 GTAAGTTAT
1 GTAAGTTAT
*
14172421 -TATGTATTAT
1 GTAAG--TTAT
14172431 GTAAGTTAT
1 GTAAGTTAT
*
14172440 TTAAGTTAT
1 GTAAGTTAT
14172449 GTAAGTTAAAT
1 GTAAGTT--AT
14172460 GT-A-TTAT
1 GTAAGTTAT
*
14172467 GTAGGTTAT
1 GTAAGTTAT
*
14172476 GTAAGTTGT
1 GTAAGTTAT
*
14172485 GTAAGATAT
1 GTAAGTTAT
*
14172494 TTAAGTTAT
1 GTAAGTTAT
*
14172503 GTAAGTTTT
1 GTAAGTTAT
14172512 GT-A-TTAT
1 GTAAGTTAT
*
14172519 GTAAGTTGT
1 GTAAGTTAT
14172528 GTAAGTTAT
1 GTAAGTTAT
14172537 GTAAGTTAAAT
1 GTAAGTT--AT
14172548 GT-A-TTAT
1 GTAAGTTAT
*
14172555 GTAGGTTAT
1 GTAAGTTAT
*
14172564 GTAAGTTGT
1 GTAAGTTAT
*
14172573 GTAAGATAT
1 GTAAGTTAT
*
14172582 TTAAGTTAT
1 GTAAGTTAT
*
14172591 GTAAGTTTT
1 GTAAGTTAT
14172600 GT-A-TTAT
1 GTAAGTTAT
14172607 GTAAGTTAT
1 GTAAGTTAT
* *
14172616 GTATGCTAT
1 GTAAGTTAT
14172625 GT-A-TTAT
1 GTAAGTTAT
14172632 GTAAGTT
1 GTAAGTT
14172639 GTTATGTTAT
Statistics
Matches: 383, Mismatches: 67, Indels: 74
0.73 0.13 0.14
Matches are distributed among these distances:
7 56 0.15
8 25 0.07
9 271 0.71
10 13 0.03
11 18 0.05
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.46
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:14172163 original size:25 final size:25
Alignment explanation
Indices: 14172132--14172451 Score: 147
Period size: 25 Copynumber: 12.3 Consensus size: 25
14172122 TGATATATAT
*
14172132 TTATGTATTAAGTAAATTATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
14172157 TTATGTACGTGT-A-TAAGTTATGTAAG
1 TTATGTA--T-TAAGTAAGTTATGTAAG
*
14172183 TTATGTATTAAGTAAGCTATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
* *
14172208 TTGTGTATTATGTAAGTTATGTAAG
1 TTATGTATTAAGTAAGTTATGTAAG
** * *
14172233 TTATCAAAGTAATGTATGTTATGTAAG
1 TTAT-GTATTAA-GTAAGTTATGTAAG
* *
14172260 TTGTAAGTTATTATGT-A-TTATGTAAG
1 -T-TATG-TATTAAGTAAGTTATGTAAG
*
14172286 TTATGTAAGTTATGTAAGTTAAATGT-A-
1 TTATGT-A-TTAAGTAAGTT--ATGTAAG
* *
14172313 TTATGTAGGTTATGTAAGTTGTGTAAG
1 TTATGTA--TTAAGTAAGTTATGTAAG
* * * *
14172340 ATATTTAAGTTATGTAAGTTTTGT-A-
1 TTATGT-A-TTAAGTAAGTTATGTAAG
* **
14172365 TTATGTAAGTTATGTAAGTTATCAAAG
1 TTATGT-A-TTAAGTAAGTTATGTAAG
* *
14172392 TAATGTATGTTATGTAAG-T-TGTAAG
1 TTATGTA--TTAAGTAAGTTATGTAAG
* *
14172417 TTATTATGTATTATGTAAGTTATTTAAG
1 ---TTATGTATTAAGTAAGTTATGTAAG
14172445 TTATGTA
1 TTATGTA
14172452 AGTTAAATGT
Statistics
Matches: 235, Mismatches: 32, Indels: 56
0.73 0.10 0.17
Matches are distributed among these distances:
23 2 0.01
24 6 0.03
25 84 0.36
26 47 0.20
27 70 0.30
28 17 0.07
29 9 0.04
ACGTcount: A:0.33, C:0.01, G:0.20, T:0.46
Consensus pattern (25 bp):
TTATGTATTAAGTAAGTTATGTAAG
Found at i:14172377 original size:150 final size:150
Alignment explanation
Indices: 14172195--14172536 Score: 648
Period size: 150 Copynumber: 2.3 Consensus size: 150
14172185 ATGTATTAAG
* *
14172195 TAAGCTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAG
1 TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAG
14172260 TTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTA
66 TTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTA
14172325 TGTAAGTTGTGTAAGATATT
131 TGTAAGTTGTGTAAGATATT
14172345 TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAG
1 TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAG
*
14172410 TTGTAAGTTATTATGTATTATGTAAGTTATTTAAGTTATGTAAGTTAAATGTATTATGTAGGTTA
66 TTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTA
14172475 TGTAAGTTGTGTAAGATATT
131 TGTAAGTTGTGTAAGATATT
*
14172495 TAAGTTATGTAAGTTTTGTATTATGTAAGTTGTGTAAGTTAT
1 TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTAT
14172537 GTAAGTTAAA
Statistics
Matches: 188, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
150 188 1.00
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.46
Consensus pattern (150 bp):
TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAG
TTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTA
TGTAAGTTGTGTAAGATATT
Found at i:14172555 original size:150 final size:149
Alignment explanation
Indices: 14172195--14172602 Score: 633
Period size: 150 Copynumber: 2.7 Consensus size: 149
14172185 ATGTATTAAG
* *
14172195 TAAGCTATGTAAGTTGTGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAG
1 TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTA-GTTATGTAAG
14172260 TTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTA
65 TTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTA
14172325 TGTAAGTTGTGTAAGATATT
130 TGTAAGTTGTGTAAGATATT
14172345 TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTATGTTATGTAAG
1 TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTA-GTTATGTAAG
*
14172410 TTGTAAGTTATTATGTATTATGTAAGTTATTTAAGTTATGTAAGTTAAATGTATTATGTAGGTTA
65 TTGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTA
14172475 TGTAAGTTGTGTAAGATATT
130 TGTAAGTTGTGTAAGATATT
* ** *
14172495 TAAGTTATGTAAGTTTTGTATTATGTAAGTTGTGTAAGTTATGTAAGTTAAATGTA-TTATGTAG
1 TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATCAAAG-T-AATGTAGTTATGTAA
* * * *
14172559 GTTATGTAAGTTGTGTAAG-A-TATTTAAGTTATGTAAGTTTTGTA
64 G-T-TGTAAGTTAT-TATGTATTATGTAAGTTATGTAAGTTATGTA
14172603 TTATGTAAGT
Statistics
Matches: 241, Mismatches: 12, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
150 199 0.83
151 23 0.10
152 16 0.07
153 3 0.01
ACGTcount: A:0.32, C:0.01, G:0.21, T:0.46
Consensus pattern (149 bp):
TAAGTTATGTAAGTTTTGTATTATGTAAGTTATGTAAGTTATCAAAGTAATGTAGTTATGTAAGT
TGTAAGTTATTATGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTAT
GTAAGTTGTGTAAGATATT
Found at i:14172578 original size:88 final size:88
Alignment explanation
Indices: 14172423--14172627 Score: 374
Period size: 88 Copynumber: 2.3 Consensus size: 88
14172413 TAAGTTATTA
*
14172423 TGTATTATGTAAGTTATTTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTA
1 TGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTA
14172488 AGATATTTAAGTTATGTAAGTTT
66 AGATATTTAAGTTATGTAAGTTT
*
14172511 TGTATTATGTAAGTTGTGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTA
1 TGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTA
14172576 AGATATTTAAGTTATGTAAGTTT
66 AGATATTTAAGTTATGTAAGTTT
* *
14172599 TGTATTATGTAAGTTATGTATGCTATGTA
1 TGTATTATGTAAGTTATGTAAGTTATGTA
14172628 TTATGTAAGT
Statistics
Matches: 112, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
88 112 1.00
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.47
Consensus pattern (88 bp):
TGTATTATGTAAGTTATGTAAGTTATGTAAGTTAAATGTATTATGTAGGTTATGTAAGTTGTGTA
AGATATTTAAGTTATGTAAGTTT
Found at i:14172771 original size:23 final size:23
Alignment explanation
Indices: 14172744--14172787 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
14172734 TTTTTTTTTT
14172744 AAGTTATGTATTATGTAAGTTAA
1 AAGTTATGTATTATGTAAGTTAA
14172767 AAGTTATGTATTATGTAAGTT
1 AAGTTATGTATTATGTAAGTT
14172788 TACATATAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.36, C:0.00, G:0.18, T:0.45
Consensus pattern (23 bp):
AAGTTATGTATTATGTAAGTTAA
Found at i:14173009 original size:13 final size:13
Alignment explanation
Indices: 14172991--14173155 Score: 136
Period size: 13 Copynumber: 12.5 Consensus size: 13
14172981 TAAATTTTAG
*
14172991 TAAGTAATGTATT
1 TAAGTAATATATT
*
14173004 TAAGTAACATATT
1 TAAGTAATATATT
*
14173017 TAAGTAATAAATT
1 TAAGTAATATATT
** *
14173030 TAAACAA-ATTTT
1 TAAGTAATATATT
*
14173042 AGTAAGTAATGTATT
1 --TAAGTAATATATT
*
14173057 TAAGTAACATATT
1 TAAGTAATATATT
*
14173070 TAAGTAATAAATT
1 TAAGTAATATATT
** *
14173083 TAACCAA-ATTTT
1 TAAGTAATATATT
*
14173095 AGTAAGTAATGTATT
1 --TAAGTAATATATT
*
14173110 TAAGTAATTTATT
1 TAAGTAATATATT
14173123 TAAGTAATATATT
1 TAAGTAATATATT
*
14173136 CAAGTAATATATT
1 TAAGTAATATATT
*
14173149 AAAGTAA
1 TAAGTAA
14173156 ATTTTAGTAA
Statistics
Matches: 118, Mismatches: 28, Indels: 12
0.75 0.18 0.08
Matches are distributed among these distances:
12 6 0.05
13 96 0.81
14 10 0.08
15 6 0.05
ACGTcount: A:0.46, C:0.04, G:0.10, T:0.41
Consensus pattern (13 bp):
TAAGTAATATATT
Found at i:14173047 original size:53 final size:53
Alignment explanation
Indices: 14172982--14173131 Score: 273
Period size: 53 Copynumber: 2.8 Consensus size: 53
14172972 ATATATACTT
14172982 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAAAC
1 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAAAC
*
14173035 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAACC
1 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAAAC
**
14173088 AAATTTTAGTAAGTAATGTATTTAAGTAATTTATTTAAGTAATA
1 AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATA
14173132 TATTCAAGTA
Statistics
Matches: 94, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
53 94 1.00
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.41
Consensus pattern (53 bp):
AAATTTTAGTAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAAAC
Found at i:14173182 original size:66 final size:66
Alignment explanation
Indices: 14173044--14173182 Score: 170
Period size: 66 Copynumber: 2.1 Consensus size: 66
14173034 CAAATTTTAG
* * ** *
14173044 TAAGTAATGTATTTAAGTAACATATTTAAGTAATAAATTTAACCAAATTTTAGTAAGTAATGTAT
1 TAAGTAATGTATTTAAGTAACATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATAT
14173109 T
66 T
* * * ** *
14173110 TAAGTAATTTATTTAAGTAATATATTCAAGTAATATATTAAAGTAAATTTTAGTAAAAAATATGT
1 TAAGTAATGTATTTAAGTAACATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATAT
14173175 T
66 T
*
14173176 TTAGTAA
1 TAAGTAA
14173183 GTAATGTAAG
Statistics
Matches: 61, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
66 61 1.00
ACGTcount: A:0.45, C:0.03, G:0.10, T:0.42
Consensus pattern (66 bp):
TAAGTAATGTATTTAAGTAACATATTCAAGTAATAAATTAAACCAAATTTTAGTAAAAAATATAT
T
Found at i:14173338 original size:20 final size:19
Alignment explanation
Indices: 14173306--14173357 Score: 63
Period size: 18 Copynumber: 2.8 Consensus size: 19
14173296 TTGTAAAAAT
14173306 ATATTAAAA-ATATAATAA
1 ATATTAAAATATATAATAA
*
14173324 ATATTGAAAATATATATTAA
1 ATATT-AAAATATATAATAA
*
14173344 CT-TTAAAATATATA
1 ATATTAAAATATATA
14173358 TTAATAAGTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
18 15 0.50
19 6 0.20
20 9 0.30
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (19 bp):
ATATTAAAATATATAATAA
Found at i:14173907 original size:13 final size:13
Alignment explanation
Indices: 14173866--14173908 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
14173856 AACTCCCTTT
*
14173866 TAAAACTAAAAAA
1 TAAAACTAAAATA
* *
14173879 TAATAATTAAAGTA
1 TAA-AACTAAAATA
14173893 TAAAACTAAAATA
1 TAAAACTAAAATA
14173906 TAA
1 TAA
14173909 CAAAATCCAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
13 14 0.58
14 10 0.42
ACGTcount: A:0.67, C:0.05, G:0.02, T:0.26
Consensus pattern (13 bp):
TAAAACTAAAATA
Found at i:14175669 original size:147 final size:144
Alignment explanation
Indices: 14175261--14175670 Score: 376
Period size: 147 Copynumber: 2.8 Consensus size: 144
14175251 AAATTAACCA
* * *
14175261 TTTGCGGCGTTTATAAATAAGTGCCACTAACTATAAGTCAAAACGTAGTCGTTTCATCAACAAAT
1 TTTGCGGCGTTT-TAAGTAAGTGCCACTAACTATAAGTCAAAACGAAGTCGTTTCATCAACAATT
* * * * * *
14175326 AGCTCATGCCTCTGGCGTTTTTGAATAAACGCCACTAATA-ATACAGCAAAGCAGCCTCGTATCA
65 AACTCAAGCCTGTGGCGTTTCTGAA-AAACGCCACTAATACATACA-CAAAACAGCATCGTATCA
*
14175390 ATAAATGTTAAAACATT
128 ATAAATGTTAAAACAAT
* * * * * *
14175407 TTTGCGGCATTTTAAGCGAAGTGCCACTAACTATAAATCAAAACGCAGTCGCTTCATCAACACTT
1 TTTGCGGCGTTTTAAG-TAAGTGCCACTAACTATAAGTCAAAACGAAGTCGTTTCATCAACAATT
** * * * * * ** * *
14175472 TCCTCAAACCCGTGGCATTT-TCGAAAAATTGCCACGAATAACATTTACAAAACGGCATCGTTTC
65 AACTCAAGCCTGTGGCGTTTCT-GAAAAA-CGCCACTAAT-ACATACACAAAACAGCATCGTATC
* *
14175536 TATAAATGTTAGAACAAT
127 AATAAATGTTAAAACAAT
* * ** *
14175554 TTTGAGGCGTTTTAAGTAAAGTGCCACTAAATATAAGTTC-AAACGAAGTCGTTTCCCCAACAGT
1 TTTGCGGCGTTTTAAGT-AAGTGCCACTAACTATAAG-TCAAAACGAAGTCGTTTCATCAACAAT
* *
14175618 TAACTCAAGCTTGTGGCGTTTCCTGAAAAACGCCACTAATACCATAGACAAAA
64 TAACTCAAGCCTGTGGCGTTT-CTGAAAAACGCCACTAATA-CATACACAAAA
14175671 TGACTACATT
Statistics
Matches: 208, Mismatches: 46, Indels: 19
0.76 0.17 0.07
Matches are distributed among these distances:
145 7 0.03
146 78 0.38
147 111 0.53
148 11 0.05
149 1 0.00
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (144 bp):
TTTGCGGCGTTTTAAGTAAGTGCCACTAACTATAAGTCAAAACGAAGTCGTTTCATCAACAATTA
ACTCAAGCCTGTGGCGTTTCTGAAAAACGCCACTAATACATACACAAAACAGCATCGTATCAATA
AATGTTAAAACAAT
Found at i:14177340 original size:114 final size:114
Alignment explanation
Indices: 14177143--14177573 Score: 567
Period size: 114 Copynumber: 3.8 Consensus size: 114
14177133 GCGCTTCATA
* * * *
14177143 AAAAACGCCGCTAAATCCCCGAATGCTCAGAAAACGGCATCGTTAGGCTTAGGTTTTTTTGCGGC
1 AAAAACGCCGCTAAATCCCTGAATGCTCAGAAAACGGCATCGTTGGGCTTCGGTTTCTTTGCGGC
** *
14177208 ATTTACTCAAAAACGCCGCTAAAGTCCTGAGCATTAGTGAAGCTTCACC
66 GCTTACTCAAAAACGCCGCTAAAGTCCTGAGCATTAGCGAAGCTTCACC
* * * *
14177257 AAAAACACCGTTAAATCTCTGAATGCTCAGAAAACGACATCGTTGGGCTTCGGTTTCTTTGCGGC
1 AAAAACGCCGCTAAATCCCTGAATGCTCAGAAAACGGCATCGTTGGGCTTCGGTTTCTTTGCGGC
* *
14177322 GCTTACTCAAAAATGCCGCTAAAGTCTTGAGCATTAGCGACA-CTTCACC
66 GCTTACTCAAAAACGCCGCTAAAGTCCTGAGCATTAGCGA-AGCTTCACC
* * * *
14177371 GAAAATGCCGCTAAATCCCTGAATGCTCAGAAAACTGCGTCGTTGGGCTTCGGTTTCTTTGCGGC
1 AAAAACGCCGCTAAATCCCTGAATGCTCAGAAAACGGCATCGTTGGGCTTCGGTTTCTTTGCGGC
* * **
14177436 GCTTAATCAAAAACGTCGCTAAAGTCCTGAGCATTAGCGGCGCTTCACC
66 GCTTACTCAAAAACGCCGCTAAAGTCCTGAGCATTAGCGAAGCTTCACC
* * * ** *
14177485 GAAAATGCCACTAAATCCCAAAATGCTCAGAAAACGGCGTCGTTGGGCTTCGGTTTCTTTGCGGC
1 AAAAACGCCGCTAAATCCCTGAATGCTCAGAAAACGGCATCGTTGGGCTTCGGTTTCTTTGCGGC
* * * *
14177550 GCTTCCACAAAATCACCGCTAAAG
66 GCTTACTCAAAAACGCCGCTAAAG
14177574 CCTCGAATAG
Statistics
Matches: 278, Mismatches: 37, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
114 277 1.00
115 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (114 bp):
AAAAACGCCGCTAAATCCCTGAATGCTCAGAAAACGGCATCGTTGGGCTTCGGTTTCTTTGCGGC
GCTTACTCAAAAACGCCGCTAAAGTCCTGAGCATTAGCGAAGCTTCACC
Found at i:14182237 original size:88 final size:88
Alignment explanation
Indices: 14182088--14182680 Score: 608
Period size: 88 Copynumber: 6.8 Consensus size: 88
14182078 AGCAGATCAG
* *
14182088 TAAAAATAGTAGATCTTGCCTTCCGGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTGCCT
14182153 CCCTAGGTTGCAGCGGAGAAGGT
66 CCCTAGGTTGCAGCGGAGAAGGT
* * * * *
14182176 TAAAAAAAGCAGATCTTGTCTTCCTACGCCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTGCCT
* *
14182241 CCCTAGGTTGCAGCGAAGCAGGT
66 CCCTAGGTTGCAGCGGAGAAGGT
* * *
14182264 TAAAAATAGCAGATCTTGCCTTCCT--ATCGACAGCGAAGCAGATTGAAGACA-TCAACCTTGCC
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACT-AGCCTTGCC
* * *
14182326 TCCCTGGGTTACAGCGGAGCAGGT
65 TCCCTAGGTTGCAGCGGAGAAGGT
* *
14182350 TAAAAATAGCAGATTTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTGCCT
* *
14182415 CCCTAGGTTGTAGCAGAGCAA-GT
66 CCCTAGGTTGCAGCGGAG-AAGGT
* * * * ** **
14182438 TAAAAATAGCATATCTTGCCTTCTTGCACCGACAGTGAAGCAAATCGAAGACTTTAGCCTTATCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTGCCT
** * *
14182503 CCCT-GAGCAGCAGTGGAGTAGGT
66 CCCTAG-GTTGCAGCGGAGAAGGT
* ** * * * * * * * *
14182526 TGAAAATTA-CAGATCTT-ATTTCCCT-AAGCAATAGCGGAGTAGATCAAAGACACTAACCTTGC
1 T-AAAAATAGCAGATCTTGCCTT-CCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTGC
* * * *
14182588 CTCCCTTGGTGGCAGCAGAGTAGGT
64 CTCCCTAGGTTGCAGCGGAGAAGGT
* * ** * * *
14182613 TAAAGATAGCAGATCTTGCCTTCCTGTACTAATAGTGAAGTAGATCGAAGACACTAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTGCCT
14182678 CCC
66 CCC
14182681 ACGGTGGCAG
Statistics
Matches: 413, Mismatches: 79, Indels: 26
0.80 0.15 0.05
Matches are distributed among these distances:
86 81 0.20
87 58 0.14
88 267 0.65
89 7 0.02
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (88 bp):
TAAAAATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTGCCT
CCCTAGGTTGCAGCGGAGAAGGT
Found at i:14182384 original size:174 final size:175
Alignment explanation
Indices: 14182088--14182680 Score: 590
Period size: 174 Copynumber: 3.4 Consensus size: 175
14182078 AGCAGATCAG
* *
14182088 TAAAAATAGTAGATCTTGCCTTCCGGCACCGACAGCGAAGCAGATCGAAGACACTAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCC-GCACCGACAGCGAAGCAGATCGAAGACACTAACCTTGCCT
* * *
14182153 CCCTAGGTTGCAGCGGAGAAGGTTAAAAAAAGCAGATCTTGTCTTCCTACGCCGACAGCGAAGCA
65 CCCTAGGTTACAGCGGAGAAGGTTAAAAAAAGCAGATCTTGCCTTCCTACACCGACAGCGAAGCA
*
14182218 GATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGC-GAAGCAGGT
130 GATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCAG-AGCAAGT
* * *
14182264 TAAAAATAGCAGATCTTGCCTTCC-TATCGACAGCGAAGCAGATTGAAGACA-TCAACCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCCGCACCGACAGCGAAGCAGATCGAAGACACT-AACCTTGCCT
* * * * *
14182327 CCCTGGGTTACAGCGGAGCAGGTTAAAAATAGCAGATTTTGCCTTCCTGCACCGACAGCGAAGCA
65 CCCTAGGTTACAGCGGAGAAGGTTAAAAAAAGCAGATCTTGCCTTCCTACACCGACAGCGAAGCA
*
14182392 GATCGAAGACACCAGCCTTGCCTCCCTAGGTTGTAGCAGAGCAAGT
130 GATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCAGAGCAAGT
* * * * ** * **
14182438 TAAAAATAGCATATCTTGCCTTCTTGCACCGACAGTGAAGCAAATCGAAGACTTTAGCCTTATCT
1 TAAAAATAGCAGATCTTGCCTTC-CGCACCGACAGCGAAGCAGATCGAAGACACTAACCTTGCCT
* * * ** ** * * * *
14182503 CCCT-GAG-CAGCAGTGGAGTAGGTTGAAAATTA-CAGATCTT-ATTTCCCTA-AGCAATAGCGG
65 CCCTAG-GTTA-CAGCGGAGAAGGTT-AAAAAAAGCAGATCTTGCCTT-CCTACACCGACAGCGA
* * * * * * * *
14182563 AGTAGATCAAAGACACTAACCTTGCCTCCCTTGGTGGCAGCAGAGTAGGT
126 AGCAGATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCAGAGCAAGT
* * ** * * * *
14182613 TAAAGATAGCAGATCTTGCCTTCCTGTACTAATAGTGAAGTAGATCGAAGACACTAGCCTTGCCT
1 TAAAAATAGCAGATCTTGCCTTCC-GCACCGACAGCGAAGCAGATCGAAGACACTAACCTTGCCT
14182678 CCC
65 CCC
14182681 ACGGTGGCAG
Statistics
Matches: 347, Mismatches: 60, Indels: 21
0.81 0.14 0.05
Matches are distributed among these distances:
173 1 0.00
174 154 0.44
175 107 0.31
176 78 0.22
177 7 0.02
ACGTcount: A:0.30, C:0.25, G:0.23, T:0.22
Consensus pattern (175 bp):
TAAAAATAGCAGATCTTGCCTTCCGCACCGACAGCGAAGCAGATCGAAGACACTAACCTTGCCTC
CCTAGGTTACAGCGGAGAAGGTTAAAAAAAGCAGATCTTGCCTTCCTACACCGACAGCGAAGCAG
ATCGAAGACACCAGCCTTGCCTCCCTAGGTTGCAGCAGAGCAAGT
Found at i:14182848 original size:50 final size:50
Alignment explanation
Indices: 14182773--14183056 Score: 142
Period size: 50 Copynumber: 5.7 Consensus size: 50
14182763 CTTCAGCAGC
* * * *
14182773 AGTGGAGCAAATTGAAACCACGACGGTGAATCTTACTCCCCTAGCGGTGT
1 AGTGGAACAGATTGAAGCCACGACGGCGAATCTTACTCCCCTAGCGGTGT
* * * * * ** *
14182823 AGTGGGACAGATTGAAGCTACGACGGCGAATCTCATTTCCCC-AACATTGC
1 AGTGGAACAGATTGAAGCCACGACGGCGAATCTTA-CTCCCCTAGCGGTGT
* ** * * * * * * * *
14182873 AATTTAAAAGATTGAAGCCGCAACAGTGAATCTTACTTCTCTGGCGGTGT
1 AGTGGAACAGATTGAAGCCACGACGGCGAATCTTACTCCCCTAGCGGTGT
* * **** *
14182923 AGTGGAACAGATTGAAGCTACGACGGCGAATCTCGT-TTCCCC-AATATTGC
1 AGTGGAACAGATTGAAGCCACGACGGCGAATCT--TACTCCCCTAGCGGTGT
* ** * * * * * * * *
14182973 AATTAAAAAGATTAAAGTCGCAATGGCGAATCTTACTTCACTAGCGGTGT
1 AGTGGAACAGATTGAAGCCACGACGGCGAATCTTACTCCCCTAGCGGTGT
*
14183023 AGTAGAACAGATTGAAGCCACGACGGCGAATCTT
1 AGTGGAACAGATTGAAGCCACGACGGCGAATCTT
14183057 GTTTCCCTAA
Statistics
Matches: 152, Mismatches: 76, Indels: 12
0.63 0.32 0.05
Matches are distributed among these distances:
48 1 0.01
49 6 0.04
50 136 0.89
51 8 0.05
52 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.24, T:0.24
Consensus pattern (50 bp):
AGTGGAACAGATTGAAGCCACGACGGCGAATCTTACTCCCCTAGCGGTGT
Found at i:14182956 original size:100 final size:100
Alignment explanation
Indices: 14182798--14183089 Score: 422
Period size: 100 Copynumber: 2.9 Consensus size: 100
14182788 AACCACGACG
* * * *
14182798 GTGAATCTTACTCCCCTAGCGGTGTAGTGGGACAGATTGAAGCTACGACGGCGAATCTCATTTCC
1 GTGAATCTTACTTCACTAGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCC
14182863 CCAACATTGCAATTTAAAAGATTGAAGCCGCAACA
66 CCAACATTGCAATTTAAAAGATTGAAGCCGCAACA
* *
14182898 GTGAATCTTACTTCTCTGGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCC
1 GTGAATCTTACTTCACTAGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCC
* * * * **
14182963 CCAATATTGCAATTAAAAAGATTAAAGTCGCAATG
66 CCAACATTGCAATTTAAAAGATTGAAGCCGCAACA
* * * *
14182998 GCGAATCTTACTTCACTAGCGGTGTAGTAGAACAGATTGAAGCCACGACGGCGAATCTTGTTTCC
1 GTGAATCTTACTTCACTAGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCC
* *
14183063 CTAACATTGCAATTTAAAAGACTGAAG
66 CCAACATTGCAATTTAAAAGATTGAAG
14183090 ATGGCGAATC
Statistics
Matches: 170, Mismatches: 22, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 170 1.00
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.26
Consensus pattern (100 bp):
GTGAATCTTACTTCACTAGCGGTGTAGTGGAACAGATTGAAGCTACGACGGCGAATCTCGTTTCC
CCAACATTGCAATTTAAAAGATTGAAGCCGCAACA
Found at i:14185136 original size:23 final size:22
Alignment explanation
Indices: 14185085--14185129 Score: 54
Period size: 22 Copynumber: 1.9 Consensus size: 22
14185075 ATCCATGCAC
*
14185085 ATATACATGTATTTTTTATAATAT
1 ATATACA--TATTTTTTAAAATAT
14185109 ATATACATATTTTTTAGAAAT
1 ATATACATATTTTTTA-AAAT
14185130 TATTATAAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 9 0.47
23 3 0.16
24 7 0.37
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.51
Consensus pattern (22 bp):
ATATACATATTTTTTAAAATAT
Found at i:14187651 original size:16 final size:18
Alignment explanation
Indices: 14187625--14187659 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
14187615 TAGAATTGGG
14187625 TTGAGAAAATT-ATTTAA
1 TTGAGAAAATTAATTTAA
14187642 TTGA-AAAATTAATTTAA
1 TTGAGAAAATTAATTTAA
14187659 T
1 T
14187660 AATATTTATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (18 bp):
TTGAGAAAATTAATTTAA
Found at i:14190455 original size:24 final size:25
Alignment explanation
Indices: 14190410--14190456 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
14190400 ATTCACTTTT
*
14190410 ATTTTTACTTTAATCTTTTTTTTGA
1 ATTTTTACTTTAATCTTATTTTTGA
14190435 ATTTTT-CTTTAAT-TTCATTTTT
1 ATTTTTACTTTAATCTT-ATTTTT
14190457 CGAAATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 2 0.10
24 12 0.60
25 6 0.30
ACGTcount: A:0.19, C:0.09, G:0.02, T:0.70
Consensus pattern (25 bp):
ATTTTTACTTTAATCTTATTTTTGA
Found at i:14191034 original size:3 final size:3
Alignment explanation
Indices: 14191026--14191055 Score: 51
Period size: 3 Copynumber: 9.7 Consensus size: 3
14191016 ATAAATTTGA
14191026 TAT TAT TAT TAT TAT TAAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT T-AT TAT TAT TAT TA
14191056 GTTTTATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 23 0.88
4 3 0.12
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:14195245 original size:19 final size:19
Alignment explanation
Indices: 14195204--14195246 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
14195194 TACCTCTTTT
*
14195204 TGCATTAATTTCATTCATC
1 TGCATTAATTTCATTCATA
14195223 TGCATTACATTTCATT-ATA
1 TGCATTA-ATTTCATTCATA
14195242 TGCAT
1 TGCAT
14195247 CAAGTATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 14 0.64
20 8 0.36
ACGTcount: A:0.28, C:0.19, G:0.07, T:0.47
Consensus pattern (19 bp):
TGCATTAATTTCATTCATA
Found at i:14203643 original size:44 final size:43
Alignment explanation
Indices: 14203589--14203706 Score: 139
Period size: 43 Copynumber: 2.7 Consensus size: 43
14203579 CATATCAAAC
* * *
14203589 CTTATCTCCCTGAAGTTGCAGTGGGGCAGGTTGAAATTACAAG-T
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAATGA-AAGAT
* **
14203633 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAATGATGGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATGAAAGAT
* *
14203676 CTTATCTCTCTGAAGTTGCAGTAGAGCAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
14203707 CACATTAGAC
Statistics
Matches: 64, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
42 1 0.02
43 34 0.53
44 29 0.45
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.31
Consensus pattern (43 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAATGAAAGAT
Found at i:14205366 original size:13 final size:13
Alignment explanation
Indices: 14205348--14205373 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14205338 TAAATTTGAT
14205348 ATTATTATTATTA
1 ATTATTATTATTA
14205361 ATTATTATTATTA
1 ATTATTATTATTA
14205374 GTTTTATTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (13 bp):
ATTATTATTATTA
Found at i:14205923 original size:21 final size:21
Alignment explanation
Indices: 14205899--14205948 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
14205889 TGCTCGTATT
14205899 ATTTTTACTTACAT-TATCATA
1 ATTTTTACTTACATATAT-ATA
*
14205920 ATTTTTA-TTCCATCATATATA
1 ATTTTTACTTACAT-ATATATA
14205941 ATTTTTAC
1 ATTTTTAC
14205949 CCAAATTCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 5 0.20
21 17 0.68
22 3 0.12
ACGTcount: A:0.32, C:0.14, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTTTTACTTACATATATATA
Found at i:14213347 original size:17 final size:17
Alignment explanation
Indices: 14213327--14213366 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
14213317 GACAGTATTC
14213327 CCTGGCAAATAGTATCA
1 CCTGGCAAATAGTATCA
* * *
14213344 CCTGACAGATAGTATCT
1 CCTGGCAAATAGTATCA
14213361 CCTGGC
1 CCTGGC
14213367 GGACAGCATC
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.25
Consensus pattern (17 bp):
CCTGGCAAATAGTATCA
Found at i:14214936 original size:19 final size:19
Alignment explanation
Indices: 14214914--14214951 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
14214904 AGGATATCCT
14214914 TAATCTCTTTAG-ATAAATC
1 TAATCTCTTT-GCATAAATC
14214933 TAATCTCTTTGCATAAATC
1 TAATCTCTTTGCATAAATC
14214952 CGTTCTCCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 1 0.06
19 17 0.94
ACGTcount: A:0.34, C:0.18, G:0.05, T:0.42
Consensus pattern (19 bp):
TAATCTCTTTGCATAAATC
Found at i:14216696 original size:26 final size:26
Alignment explanation
Indices: 14216667--14216726 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
14216657 TTTACCACAG
*
14216667 TAAAATTTTGACGAATTTACTCTCGA
1 TAAAATTTTGACGAATTTACCCTCGA
* *
14216693 TAAAATTTTGATGATTTTACCCTCGA
1 TAAAATTTTGACGAATTTACCCTCGA
14216719 T-AAATTTT
1 TAAAATTTT
14216727 CGAGAAAATT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
25 7 0.23
26 24 0.77
ACGTcount: A:0.33, C:0.13, G:0.10, T:0.43
Consensus pattern (26 bp):
TAAAATTTTGACGAATTTACCCTCGA
Found at i:14222645 original size:45 final size:45
Alignment explanation
Indices: 14222581--14222673 Score: 177
Period size: 45 Copynumber: 2.1 Consensus size: 45
14222571 GTAGGTCTTG
*
14222581 TTTAGGAACCTTCTTCCACTCAATATTTAAAACAGACATGCAATT
1 TTTAGGAACCTTCTCCCACTCAATATTTAAAACAGACATGCAATT
14222626 TTTAGGAACCTTCTCCCACTCAATATTTAAAACAGACATGCAATT
1 TTTAGGAACCTTCTCCCACTCAATATTTAAAACAGACATGCAATT
14222671 TTT
1 TTT
14222674 TTAACTTTTG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.34, C:0.23, G:0.09, T:0.34
Consensus pattern (45 bp):
TTTAGGAACCTTCTCCCACTCAATATTTAAAACAGACATGCAATT
Found at i:14224479 original size:50 final size:51
Alignment explanation
Indices: 14224381--14224492 Score: 122
Period size: 50 Copynumber: 2.2 Consensus size: 51
14224371 AGTGATTTTG
* * * *
14224381 GCGTGTTTCTGGGGGCAGATGTAAAGCCTACGGGCTTGGCACTTGGTGCCCAA
1 GCGTGTTTCTGGAGG-AGATGTAAAGCCTACAGGCTAGGCACTCGGTG-CCAA
* *
14224434 GCGTGTTTCTGGAGG-GATGT-TAGCCTACAGGCTAGGCAGTCGGTGCCAA
1 GCGTGTTTCTGGAGGAGATGTAAAGCCTACAGGCTAGGCACTCGGTGCCAA
14224483 G-GTGTGTTCT
1 GCGTGT-TTCT
14224493 TGGTTAGACT
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
48 4 0.08
49 9 0.17
50 20 0.38
51 5 0.10
53 14 0.27
ACGTcount: A:0.16, C:0.21, G:0.37, T:0.27
Consensus pattern (51 bp):
GCGTGTTTCTGGAGGAGATGTAAAGCCTACAGGCTAGGCACTCGGTGCCAA
Found at i:14228325 original size:19 final size:19
Alignment explanation
Indices: 14228295--14228331 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
14228285 TTTGACAGTA
14228295 TGATGATGTGATTGATATTG
1 TGATGATGTGATTG-TATTG
14228315 TGATG-TGTGATTGTATT
1 TGATGATGTGATTGTATT
14228332 ATTTGGTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 8 0.47
20 5 0.29
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.49
Consensus pattern (19 bp):
TGATGATGTGATTGTATTG
Found at i:14230173 original size:25 final size:25
Alignment explanation
Indices: 14230127--14230183 Score: 89
Period size: 26 Copynumber: 2.3 Consensus size: 25
14230117 TTTCTCACCT
*
14230127 CAATTTTACCCTAGTAAAATTTGTGA
1 CAATTTTACCCTAGTAAAATTT-TAA
14230153 CAATTTTACCC-AGTAAAATTTTAA
1 CAATTTTACCCTAGTAAAATTTTAA
14230177 CAATTTT
1 CAATTTT
14230184 GCTTCTAGTA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 9 0.30
25 10 0.33
26 11 0.37
ACGTcount: A:0.37, C:0.16, G:0.07, T:0.40
Consensus pattern (25 bp):
CAATTTTACCCTAGTAAAATTTTAA
Found at i:14230354 original size:6 final size:6
Alignment explanation
Indices: 14230343--14230381 Score: 69
Period size: 6 Copynumber: 6.5 Consensus size: 6
14230333 AGATTGTAAG
*
14230343 TTTCCA TTTCCA TTTCTA TTTCCA TTTCCA TTTCCA TTT
1 TTTCCA TTTCCA TTTCCA TTTCCA TTTCCA TTTCCA TTT
14230382 TTAGAAACCT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.15, C:0.28, G:0.00, T:0.56
Consensus pattern (6 bp):
TTTCCA
Found at i:14233358 original size:21 final size:23
Alignment explanation
Indices: 14233304--14233358 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
14233294 TAATTTAATA
* * *
14233304 AATTCATTTTAATATTAATATAC
1 AATTCAATTAAATATAAATATAC
*
14233327 AATTGAATTAAATATAAATATA-
1 AATTCAATTAAATATAAATATAC
14233349 AA-TCAATTAA
1 AATTCAATTAA
14233359 TTTTAATTGA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
21 7 0.26
22 2 0.07
23 18 0.67
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.40
Consensus pattern (23 bp):
AATTCAATTAAATATAAATATAC
Found at i:14237139 original size:17 final size:18
Alignment explanation
Indices: 14237114--14237147 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
14237104 CGAATATAAT
14237114 AAATATTTTT-ATTTTTA
1 AAATATTTTTAATTTTTA
*
14237131 AAATTTTTTTAATTTTT
1 AAATATTTTTAATTTTT
14237148 TTTAATTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
AAATATTTTTAATTTTTA
Found at i:14237177 original size:29 final size:29
Alignment explanation
Indices: 14237119--14237225 Score: 166
Period size: 30 Copynumber: 3.7 Consensus size: 29
14237109 ATAATAAATA
*
14237119 TTTTT-ATTTTTAAA-ATTTTTTTAATTT
1 TTTTTAATTTTAAAATATTTTTTTAATTT
14237146 TTTTTAATTTTAAAATACTTTTTTTAATTT
1 TTTTTAATTTTAAAATA-TTTTTTTAATTT
14237176 TTTTTAATTTTAAAATACTTTTTTTAA-TT
1 TTTTTAATTTTAAAATA-TTTTTTTAATTT
14237205 TTTTTAATTTTAAAATATTTT
1 TTTTTAATTTTAAAATATTTT
14237226 AAAAATACTT
Statistics
Matches: 76, Mismatches: 1, Indels: 5
0.93 0.01 0.06
Matches are distributed among these distances:
27 5 0.07
28 12 0.16
29 20 0.26
30 39 0.51
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (29 bp):
TTTTTAATTTTAAAATATTTTTTTAATTT
Found at i:14237238 original size:28 final size:29
Alignment explanation
Indices: 14237147--14237244 Score: 81
Period size: 29 Copynumber: 3.3 Consensus size: 29
14237137 TTTTAATTTT
** * **
14237147 TTTTAATTTTAAAATACTTTTTTTAATTTT
1 TTTTAATTTTAAAATAC-TTTTAAAAATAC
*** **
14237177 TTTTAATTTTAAAATACTTTTTTTAATTT
1 TTTTAATTTTAAAATACTTTTAAAAATAC
14237206 TTTTAATTTTAAAATA-TTTTAAAAATAC
1 TTTTAATTTTAAAATACTTTTAAAAATAC
14237234 TTTTAAATTTT
1 TTTT-AATTTT
14237245 TTTAATTTTA
Statistics
Matches: 60, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
28 11 0.18
29 32 0.53
30 17 0.28
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (29 bp):
TTTTAATTTTAAAATACTTTTAAAAATAC
Found at i:14237266 original size:11 final size:11
Alignment explanation
Indices: 14237212--14237286 Score: 56
Period size: 11 Copynumber: 7.3 Consensus size: 11
14237202 ATTTTTTTAA
14237212 TTTTAAAATAT
1 TTTTAAAATAT
* *
14237223 TTTAAAAATAC
1 TTTTAAAATAT
14237234 TTTT-AAAT-T
1 TTTTAAAATAT
*
14237243 TTTT----TAA
1 TTTTAAAATAT
14237250 TTTTAAAATAT
1 TTTTAAAATAT
14237261 TTTTAAAATATAT
1 TTTT-AAA-ATAT
14237274 TTTTAAAAT-T
1 TTTTAAAATAT
14237284 TTT
1 TTT
14237287 GTTTTAATTT
Statistics
Matches: 51, Mismatches: 6, Indels: 15
0.71 0.08 0.21
Matches are distributed among these distances:
6 1 0.02
7 4 0.08
9 4 0.08
10 8 0.16
11 20 0.39
12 6 0.12
13 8 0.16
ACGTcount: A:0.41, C:0.01, G:0.00, T:0.57
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:14237269 original size:28 final size:30
Alignment explanation
Indices: 14237221--14237279 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 30
14237211 ATTTTAAAAT
14237221 ATTTTAAAAATACTTTTAAAT-T-TTTTTA
1 ATTTTAAAAATACTTTTAAATATATTTTTA
*
14237249 ATTTT-AAAATATTTTTAAAATATATTTTTA
1 ATTTTAAAAATACTTTT-AAATATATTTTTA
14237279 A
1 A
14237280 AATTTTTGTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 10 0.37
28 9 0.33
29 1 0.04
30 7 0.26
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (30 bp):
ATTTTAAAAATACTTTTAAATATATTTTTA
Found at i:14237280 original size:40 final size:39
Alignment explanation
Indices: 14237182--14237304 Score: 151
Period size: 38 Copynumber: 3.0 Consensus size: 39
14237172 ATTTTTTTTA
*
14237182 ATTTTAAAATACT-TTTTTTAATTTTTTTAATTTTAAAAT
1 ATTTTAAAATA-TATTTTTAAATTTTTTTAATTTTAAAAT
*
14237221 ATTTTAAAA-ATACTTTTAAATTTTTTTAATTTTAAAAT
1 ATTTTAAAATATATTTTTAAATTTTTTTAATTTTAAAAT
14237259 ATTTTTAAAATATATTTTTAAAATTTTTGTTTTAATTTTTAAAAT
1 A-TTTTAAAATATATTTTT-AAA--TTT-TTTTAA-TTTTAAAAT
14237304 A
1 A
14237305 AATTTTTGGT
Statistics
Matches: 73, Mismatches: 3, Indels: 10
0.85 0.03 0.12
Matches are distributed among these distances:
37 1 0.01
38 26 0.36
39 17 0.23
40 7 0.10
41 3 0.04
43 3 0.04
44 6 0.08
45 10 0.14
ACGTcount: A:0.39, C:0.02, G:0.01, T:0.59
Consensus pattern (39 bp):
ATTTTAAAATATATTTTTAAATTTTTTTAATTTTAAAAT
Found at i:14237293 original size:14 final size:13
Alignment explanation
Indices: 14237257--14237282 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14237247 TAATTTTAAA
14237257 ATATTTTTAAAAT
1 ATATTTTTAAAAT
14237270 ATATTTTTAAAAT
1 ATATTTTTAAAAT
14237283 TTTTGTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATATTTTTAAAAT
Found at i:14238308 original size:3 final size:3
Alignment explanation
Indices: 14238302--14238336 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
14238292 TATGCTTTTT
14238302 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
14238337 TTGGCTGGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:14239762 original size:49 final size:49
Alignment explanation
Indices: 14239685--14239800 Score: 162
Period size: 50 Copynumber: 2.3 Consensus size: 49
14239675 TAAAAAGGGT
** *
14239685 GTTTGAACTAGTGTTAGCATTATTGAACTAGCTC-TTTGAGCAACCCTG
1 GTTTGAACTAGTGTTAGCAACATCGAACTAGCTCATTTGAGCAACCCTG
14239733 GTTTGAAGCTAGTGTTAGCAACATCGAACTAGCTCATTTGAGCAACCCTG
1 GTTTGAA-CTAGTGTTAGCAACATCGAACTAGCTCATTTGAGCAACCCTG
**
14239783 GTCTAAAACTAGTGTTAG
1 GT-TTGAACTAGTGTTAG
14239801 AAACCCGAAT
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
48 7 0.12
49 24 0.40
50 26 0.43
51 3 0.05
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.32
Consensus pattern (49 bp):
GTTTGAACTAGTGTTAGCAACATCGAACTAGCTCATTTGAGCAACCCTG
Found at i:14240381 original size:4 final size:4
Alignment explanation
Indices: 14240374--14240420 Score: 94
Period size: 4 Copynumber: 11.8 Consensus size: 4
14240364 ATTCATTCAT
14240374 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
14240421 TCGTCCCTTA
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:14247080 original size:43 final size:43
Alignment explanation
Indices: 14246964--14247101 Score: 131
Period size: 43 Copynumber: 3.2 Consensus size: 43
14246954 ATACTCAGAA
* *
14246964 ACACATATATCACATA-CAATGCC-ATATCCCAGATATGGTCTT
1 ACACATA-ATCTCATATCAATGCCAATATCCCAGACATGGTCTT
* * * *
14247006 ACATGAT-ATCAT-ATATCGATGCCACTATCCCAGACAGGGTCTT
1 ACA-CATAATC-TCATATCAATGCCAATATCCCAGACATGGTCTT
* * *
14247049 ACACATAATCTCATATCAATGCCAATGTCCCAAACATGGTATT
1 ACACATAATCTCATATCAATGCCAATATCCCAGACATGGTCTT
*
14247092 ACACGTAATC
1 ACACATAATC
14247102 ACACCTCAGG
Statistics
Matches: 76, Mismatches: 14, Indels: 11
0.75 0.14 0.11
Matches are distributed among these distances:
41 6 0.08
42 12 0.16
43 58 0.76
ACGTcount: A:0.35, C:0.26, G:0.12, T:0.28
Consensus pattern (43 bp):
ACACATAATCTCATATCAATGCCAATATCCCAGACATGGTCTT
Found at i:14258468 original size:57 final size:57
Alignment explanation
Indices: 14258370--14258479 Score: 141
Period size: 57 Copynumber: 1.9 Consensus size: 57
14258360 AGAAATGGTA
* * * *
14258370 AAAATGGAGAAATAAGAAACATTTGGAAGTGATTATGGTTTTCTCCAAAATGACAATG
1 AAAATGGAGAAAT-AGAAACATTTGGAAATGAATATAGTTTTCTCAAAAATGACAATG
* *
14258428 AAAATGGAGAAAT-GAAACCATTTGGAAATGAATGTAGTTTTCTTAAAAATGA
1 AAAATGGAGAAATAGAAA-CATTTGGAAATGAATATAGTTTTCTCAAAAATGA
14258480 AAATAACCTG
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
56 4 0.09
57 28 0.62
58 13 0.29
ACGTcount: A:0.45, C:0.07, G:0.20, T:0.28
Consensus pattern (57 bp):
AAAATGGAGAAATAGAAACATTTGGAAATGAATATAGTTTTCTCAAAAATGACAATG
Found at i:14266520 original size:17 final size:16
Alignment explanation
Indices: 14266476--14266522 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 16
14266466 ATGATATTTT
14266476 TTTAAAAAT-TTAATA
1 TTTAAAAATATTAATA
*
14266491 -TTAAAATTAATTAATGA
1 TTTAAAAAT-ATTAAT-A
14266508 TTTAAAAATATTAAT
1 TTTAAAAATATTAAT
14266523 TGTTAGAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
14 7 0.27
16 5 0.19
17 7 0.27
18 7 0.27
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (16 bp):
TTTAAAAATATTAATA
Found at i:14273446 original size:22 final size:22
Alignment explanation
Indices: 14273412--14273468 Score: 62
Period size: 22 Copynumber: 2.6 Consensus size: 22
14273402 GGTTCATGCT
*
14273412 AAGA-GTTCACACAACGCATAG
1 AAGAGGTTCGCACAACGCATAG
* * * *
14273433 ATGAGGTTTGCACAATGCATGG
1 AAGAGGTTCGCACAACGCATAG
14273455 AAGAGGTTCGCACA
1 AAGAGGTTCGCACA
14273469 TGCAATGTTC
Statistics
Matches: 28, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 3 0.11
22 25 0.89
ACGTcount: A:0.35, C:0.19, G:0.26, T:0.19
Consensus pattern (22 bp):
AAGAGGTTCGCACAACGCATAG
Done.