Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 49 of 170
Found at i:14277847 original size:18 final size:18
Alignment explanation
Indices: 14277824--14277858 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
14277814 CTTTGCAACA
14277824 ACATCAATAACACCACCC
1 ACATCAATAACACCACCC
14277842 ACATCAATAACACCACC
1 ACATCAATAACACCACC
14277859 ACTTTCCAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.46, C:0.43, G:0.00, T:0.11
Consensus pattern (18 bp):
ACATCAATAACACCACCC
Found at i:14282566 original size:27 final size:27
Alignment explanation
Indices: 14282526--14282828 Score: 271
Period size: 27 Copynumber: 11.3 Consensus size: 27
14282516 GAGTTATGGG
* *
14282526 AAAATGACCAAAATACCCTCGATGGGT
1 AAAATGACCGAAATACCCTCGAAGGGT
* * *
14282553 GAAATAACCGAAATACCCTTGAAGGGT
1 AAAATGACCGAAATACCCTCGAAGGGT
* *
14282580 AAAATGACCGAAATACCTTTGAAGGGT
1 AAAATGACCGAAATACCCTCGAAGGGT
* *
14282607 AAAATGACTGAAATACCC-CTAAAGGGT
1 AAAATGACCGAAATACCCTC-GAAGGGT
* * *
14282634 AAAATAACCAAAATACCC-CTAAAGGGT
1 AAAATGACCGAAATACCCTC-GAAGGGT
*
14282661 AAAATGACCAAAATAACCCT-GAAGGGT
1 AAAATGACCGAAAT-ACCCTCGAAGGGT
* * *
14282688 AAAATGACCAAAATACCC-CTTAATGGT
1 AAAATGACCGAAATACCCTC-GAAGGGT
* *
14282715 AAAATGACCGAAATA-TCTCCAAAGGGT
1 AAAATGACCGAAATACCCT-CGAAGGGT
***
14282742 AAAATGTTTGAAATACCC-CTGAAGGGT
1 AAAATGACCGAAATACCCTC-GAAGGGT
* * *
14282769 AAAATGATCGAAATACCCCCGAAGGAT
1 AAAATGACCGAAATACCCTCGAAGGGT
14282796 AAAATGACCGAAATACCC-C-ATAGGGT
1 AAAATGACCGAAATACCCTCGA-AGGGT
14282822 AAAATGA
1 AAAATGA
14282829 TTTTTATACC
Statistics
Matches: 232, Mismatches: 33, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
25 1 0.00
26 18 0.08
27 206 0.89
28 7 0.03
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.18
Consensus pattern (27 bp):
AAAATGACCGAAATACCCTCGAAGGGT
Found at i:14282661 original size:81 final size:79
Alignment explanation
Indices: 14282549--14282828 Score: 310
Period size: 81 Copynumber: 3.5 Consensus size: 79
14282539 TACCCTCGAT
* ** *
14282549 GGGTGAAATAACCGAAATACCCTTGAAGGGTAAAATGACCGAAATACCTTTGAAGGGTAAAATGA
1 GGGTAAAATAACCGAAATACCC-CAAAGGGTAAAATGACCGAAATACC-CTGAAGGGTAAAATGA
14282614 CTGAAATACCCCTAAA
64 CTGAAATACCCCTAAA
* *
14282630 GGGTAAAATAACCAAAATACCCCTAAAGGGTAAAATGACCAAAATAACCCTGAAGGGTAAAATGA
1 GGGTAAAATAACCGAAATACCCC-AAAGGGTAAAATGACCGAAAT-ACCCTGAAGGGTAAAATGA
** *
14282695 CCAAAATACCCCTTAA
64 CTGAAATACCCCTAAA
* * * ***
14282711 TGGTAAAATGACCGAAATATCTCCAAAGGGTAAAATGTTTGAAATACCCCTGAAGGGTAAAATGA
1 GGGTAAAATAACCGAAATA-CCCCAAAGGGTAAAATGACCGAAATA-CCCTGAAGGGTAAAATGA
**
14282776 -TCGAAATACCCCCGAA
64 CT-GAAATACCCCTAAA
* * *
14282792 GGATAAAATGACCGAAATACCCCATAGGGTAAAATGA
1 GGGTAAAATAACCGAAATACCCCAAAGGGTAAAATGA
14282829 TTTTTATACC
Statistics
Matches: 168, Mismatches: 26, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
80 16 0.10
81 146 0.87
82 6 0.04
ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19
Consensus pattern (79 bp):
GGGTAAAATAACCGAAATACCCCAAAGGGTAAAATGACCGAAATACCCTGAAGGGTAAAATGACT
GAAATACCCCTAAA
Found at i:14282814 original size:54 final size:54
Alignment explanation
Indices: 14282526--14282828 Score: 326
Period size: 54 Copynumber: 5.6 Consensus size: 54
14282516 GAGTTATGGG
* * * *
14282526 AAAATGACCAAAATA-CCCTCGATGGGTGAAATAACCGAAATACCCTTGAAGGGT
1 AAAATGACCAAAATACCCCT-GAAGGGTAAAATGACCGAAATACCCCTGAAGGGT
* ** * *
14282580 AAAATGACCGAAATACCTTTGAAGGGTAAAATGACTGAAATACCCCTAAAGGGT
1 AAAATGACCAAAATACCCCTGAAGGGTAAAATGACCGAAATACCCCTGAAGGGT
* * * *
14282634 AAAATAACCAAAATACCCCTAAAGGGTAAAATGACCAAAATAACCCTGAAGGGT
1 AAAATGACCAAAATACCCCTGAAGGGTAAAATGACCGAAATACCCCTGAAGGGT
* * * *
14282688 AAAATGACCAAAATACCCCTTAATGGTAAAATGACCGAAATATCTCC-AAAGGGT
1 AAAATGACCAAAATACCCCTGAAGGGTAAAATGACCGAAATA-CCCCTGAAGGGT
**** * * *
14282742 AAAATGTTTGAAATACCCCTGAAGGGTAAAATGATCGAAATACCCCCGAAGGAT
1 AAAATGACCAAAATACCCCTGAAGGGTAAAATGACCGAAATACCCCTGAAGGGT
*
14282796 AAAATGACCGAAATACCCC--ATAGGGTAAAATGA
1 AAAATGACCAAAATACCCCTGA-AGGGTAAAATGA
14282829 TTTTTATACC
Statistics
Matches: 207, Mismatches: 38, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
52 1 0.00
53 15 0.07
54 187 0.90
55 4 0.02
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.18
Consensus pattern (54 bp):
AAAATGACCAAAATACCCCTGAAGGGTAAAATGACCGAAATACCCCTGAAGGGT
Found at i:14284762 original size:8 final size:8
Alignment explanation
Indices: 14284751--14284792 Score: 61
Period size: 8 Copynumber: 5.5 Consensus size: 8
14284741 AAAAACAACA
14284751 AAAAATTT
1 AAAAATTT
14284759 AAAAATTT
1 AAAAATTT
14284767 -AAAATTT
1 AAAAATTT
14284774 AAAAA-TT
1 AAAAATTT
*
14284781 AAAAAATT
1 AAAAATTT
14284789 AAAA
1 AAAA
14284793 TTAAAAAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
7 14 0.44
8 18 0.56
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (8 bp):
AAAAATTT
Found at i:14284770 original size:7 final size:7
Alignment explanation
Indices: 14284752--14284798 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
14284742 AAAACAACAA
14284752 AAAATTT
1 AAAATTT
14284759 AAAAATTT
1 -AAAATTT
14284767 AAAATTT
1 AAAATTT
*
14284774 AAAAATTA
1 -AAAATTT
*
14284782 AAAAATT
1 AAAATTT
14284789 AAAA-TT
1 AAAATTT
14284795 AAAA
1 AAAA
14284799 AGAAAATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
6 6 0.17
7 16 0.46
8 13 0.37
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (7 bp):
AAAATTT
Found at i:14284770 original size:15 final size:15
Alignment explanation
Indices: 14284751--14284799 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
14284741 AAAAACAACA
14284751 AAAAATTTAAAAATT
1 AAAAATTTAAAAATT
*
14284766 TAAAATTTAAAAATT
1 AAAAATTTAAAAATT
*
14284781 AAAAAATT-AAAATT
1 AAAAATTTAAAAATT
14284795 AAAAA
1 AAAAA
14284800 GAAAATAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
14 11 0.35
15 20 0.65
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (15 bp):
AAAAATTTAAAAATT
Found at i:14284799 original size:7 final size:7
Alignment explanation
Indices: 14284751--14284799 Score: 55
Period size: 8 Copynumber: 6.7 Consensus size: 7
14284741 AAAAACAACA
14284751 AAAAATTT
1 AAAAA-TT
14284759 AAAAATTT
1 AAAAA-TT
*
14284767 AAAATTT
1 AAAAATT
14284774 AAAAATT
1 AAAAATT
14284781 AAAAAATT
1 -AAAAATT
14284789 -AAAATT
1 AAAAATT
14284795 AAAAA
1 AAAAA
14284800 GAAAATAAAT
Statistics
Matches: 37, Mismatches: 2, Indels: 5
0.84 0.05 0.11
Matches are distributed among these distances:
6 6 0.16
7 12 0.32
8 19 0.51
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (7 bp):
AAAAATT
Found at i:14284812 original size:21 final size:21
Alignment explanation
Indices: 14284730--14284814 Score: 55
Period size: 22 Copynumber: 3.9 Consensus size: 21
14284720 GAAGCACAAG
* **
14284730 AAAATGAAAAAAAAAACAACAA
1 AAAATGAAAAAAATAA-AATTA
* **
14284752 AAAATTTAAAAATTTAAAATTTA
1 AAAA-TGAAAAAAATAAAA-TTA
* *
14284775 AAAATTAAAAAATTAAAATTA
1 AAAATGAAAAAAATAAAATTA
14284796 AAAA-GAAAATAAATAAAAT
1 AAAATGAAAA-AAATAAAAT
14284815 CAATGATCCT
Statistics
Matches: 51, Mismatches: 9, Indels: 7
0.76 0.13 0.10
Matches are distributed among these distances:
20 4 0.08
21 15 0.29
22 19 0.37
23 13 0.25
ACGTcount: A:0.73, C:0.02, G:0.02, T:0.22
Consensus pattern (21 bp):
AAAATGAAAAAAATAAAATTA
Found at i:14286486 original size:5 final size:5
Alignment explanation
Indices: 14286476--14286608 Score: 53
Period size: 5 Copynumber: 25.4 Consensus size: 5
14286466 GAAGCAGAAT
* * *
14286476 AATAA AATAA AATAA ACTAA GAA-AGA AACT-A AAGAA AATAA TAATTAT
1 AATAA AATAA AATAA AATAA -AATA-A AA-TAA AATAA AATAA -AA-TAA
*
14286524 AATAA GAATAA ATATAAA ATATAA AATAA CAA-AC AA-AA AATAA GAATAA
1 AATAA -AATAA A-AT-AA A-ATAA AATAA -AATAA AATAA AATAA -AATAA
* * *
14286573 GAAT-- AATAA AGTAA AACAA AGTAA AATAA AATAA AA
1 -AATAA AATAA AATAA AATAA AATAA AATAA AATAA AA
14286609 ATAGAGAACT
Statistics
Matches: 99, Mismatches: 14, Indels: 30
0.69 0.10 0.21
Matches are distributed among these distances:
3 3 0.03
4 5 0.05
5 56 0.57
6 27 0.27
7 8 0.08
ACGTcount: A:0.71, C:0.04, G:0.06, T:0.19
Consensus pattern (5 bp):
AATAA
Found at i:14291318 original size:30 final size:30
Alignment explanation
Indices: 14291282--14291340 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
14291272 CACGGGCTGA
*
14291282 CACACGGG-TGTGTGGCCAG-CTCGTGTGGCT
1 CACACGGGCT-TGTGCCCAGCCT-GTGTGGCT
14291312 CACACGGGCTTGTGCCCAGCCTGTGTGGC
1 CACACGGGCTTGTGCCCAGCCTGTGTGGC
14291341 AATGCCCAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 23 0.88
31 3 0.12
ACGTcount: A:0.10, C:0.31, G:0.37, T:0.22
Consensus pattern (30 bp):
CACACGGGCTTGTGCCCAGCCTGTGTGGCT
Found at i:14294669 original size:20 final size:20
Alignment explanation
Indices: 14294644--14294699 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
14294634 AGATCATGAA
*
14294644 CCATTCCATTTGCTTACTTT
1 CCATTCCATTTACTTACTTT
14294664 CCATTCCATTTACTTAC-TT
1 CCATTCCATTTACTTACTTT
*
14294683 CACATTTCATTTACTTA
1 C-CATTCCATTTACTTA
14294700 TCATAAACTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
19 3 0.09
20 30 0.91
ACGTcount: A:0.21, C:0.29, G:0.02, T:0.48
Consensus pattern (20 bp):
CCATTCCATTTACTTACTTT
Found at i:14297341 original size:54 final size:54
Alignment explanation
Indices: 14297259--14297368 Score: 202
Period size: 54 Copynumber: 2.0 Consensus size: 54
14297249 ACAAGTATGG
14297259 GTAGAAACCTAATGGTTAAGCCTTTGCATTTCCCCCTTATATTCCTAAGTTTAA
1 GTAGAAACCTAATGGTTAAGCCTTTGCATTTCCCCCTTATATTCCTAAGTTTAA
* *
14297313 GTAGAATCCTAATGGTTAAGCTTTTGCATTTCCCCCTTATATTCCTAAGTTTAA
1 GTAGAAACCTAATGGTTAAGCCTTTGCATTTCCCCCTTATATTCCTAAGTTTAA
14297367 GT
1 GT
14297369 CACGCCGATC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.39
Consensus pattern (54 bp):
GTAGAAACCTAATGGTTAAGCCTTTGCATTTCCCCCTTATATTCCTAAGTTTAA
Found at i:14300487 original size:22 final size:22
Alignment explanation
Indices: 14300455--14300497 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
14300445 CTAAGTGTTC
*
14300455 TCACAACGCATAGATGAGGTTT
1 TCACAACGCATAGAAGAGGTTT
* *
14300477 TCACAATGCATGGAAGAGGTT
1 TCACAACGCATAGAAGAGGTT
14300498 CGGACATGCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.16, G:0.26, T:0.26
Consensus pattern (22 bp):
TCACAACGCATAGAAGAGGTTT
Found at i:14304929 original size:40 final size:40
Alignment explanation
Indices: 14304875--14304973 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
14304865 AGATGCATAA
* *
14304875 CAGGGTTACC-AAGTGCAATCAAGAGCACAAATGTGCGA-T
1 CAGGGGTACCGAAGTGCAAACAAGAGCACAAATGT-CGATT
* * * *
14304914 CAGGGGTACCGAAGTGCAAACAGGGGCACAGATGTCTATT
1 CAGGGGTACCGAAGTGCAAACAAGAGCACAAATGTCGATT
*
14304954 CAGGGGTACCGAAGTACAAA
1 CAGGGGTACCGAAGTGCAAA
14304974 TAGGGGCACG
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
39 11 0.22
40 40 0.78
ACGTcount: A:0.34, C:0.20, G:0.29, T:0.16
Consensus pattern (40 bp):
CAGGGGTACCGAAGTGCAAACAAGAGCACAAATGTCGATT
Found at i:14304930 original size:20 final size:20
Alignment explanation
Indices: 14304907--14304998 Score: 55
Period size: 20 Copynumber: 4.6 Consensus size: 20
14304897 GAGCACAAAT
*
14304907 GTGCGATCAGGGGTACCGAA
1 GTGCAATCAGGGGTACCGAA
* * * *
14304927 GTGCAAACAGGGGCACAGAT
1 GTGCAATCAGGGGTACCGAA
*
14304947 GT-CTATTCAGGGGTACCGAA
1 GTGC-AATCAGGGGTACCGAA
* *
14304967 GTACAAAT-AGGGGCA-CGTAA
1 GTGC-AATCAGGGGTACCG-AA
*
14304987 GTGCAATTAGGG
1 GTGCAATCAGGG
14304999 ATGCCAAAGT
Statistics
Matches: 54, Mismatches: 14, Indels: 8
0.71 0.18 0.11
Matches are distributed among these distances:
19 6 0.11
20 45 0.83
21 3 0.06
ACGTcount: A:0.30, C:0.17, G:0.35, T:0.17
Consensus pattern (20 bp):
GTGCAATCAGGGGTACCGAA
Found at i:14305009 original size:40 final size:39
Alignment explanation
Indices: 14304957--14305192 Score: 188
Period size: 40 Copynumber: 5.9 Consensus size: 39
14304947 GTCTATTCAG
* * *
14304957 GGGTACCGAAGTACAAATAGGGGCACGTAAGTGCAATTA
1 GGGTACCAAAGTACAAACAGGGGCACGTAAGTGCAATAA
* * * *
14304996 GGGATGCCAAAGTACAAACAAGGGAACGTAAGTGTAATCAA
1 GGG-TACCAAAGTACAAACAGGGGCACGTAAGTGCAAT-AA
* * * * * * *
14305037 GTGTACTAAAGTACAAAAAAGGGCCCATAAGTGCAACCAA
1 GGGTACCAAAGTACAAACAGGGGCACGTAAGTGCAA-TAA
* * *
14305077 GGGCACCAAAGTACAAACAGGGGCACGTAATTGCAATTA
1 GGGTACCAAAGTACAAACAGGGGCACGTAAGTGCAATAA
** * * * *
14305116 GAGGTACTGAAGTATAAACAGGGGCACGTAAGGGTAATCAT
1 G-GGTACCAAAGTACAAACAGGGGCACGTAAGTGCAAT-AA
*
14305157 GGGTACCGAAGTAC-AACTA-GGGCACGTAAGTGCAAT
1 GGGTACCAAAGTACAAAC-AGGGGCACGTAAGTGCAAT
14305193 CATTCAAAAA
Statistics
Matches: 152, Mismatches: 39, Indels: 12
0.75 0.19 0.06
Matches are distributed among these distances:
39 23 0.15
40 125 0.82
41 4 0.03
ACGTcount: A:0.39, C:0.17, G:0.28, T:0.17
Consensus pattern (39 bp):
GGGTACCAAAGTACAAACAGGGGCACGTAAGTGCAATAA
Found at i:14305088 original size:20 final size:21
Alignment explanation
Indices: 14305045--14305102 Score: 66
Period size: 20 Copynumber: 2.9 Consensus size: 21
14305035 AAGTGTACTA
*
14305045 AAGTACAAAAAAGGGC-CCAT
1 AAGTACAAACAAGGGCACCAT
* *
14305065 AAGTGCAACCAAGGGCACCA-
1 AAGTACAAACAAGGGCACCAT
*
14305085 AAGTACAAACAGGGGCAC
1 AAGTACAAACAAGGGCAC
14305103 GTAATTGCAA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
20 28 0.90
21 3 0.10
ACGTcount: A:0.45, C:0.24, G:0.24, T:0.07
Consensus pattern (21 bp):
AAGTACAAACAAGGGCACCAT
Found at i:14305169 original size:80 final size:79
Alignment explanation
Indices: 14304907--14305192 Score: 231
Period size: 80 Copynumber: 3.6 Consensus size: 79
14304897 GAGCACAAAT
* * * * * * *
14304907 GTGCGATCAGGGGTACCGAAGTGCAAACAGGGGCACAG-ATGT-CTATTCAGGGGTACCGAAGTA
1 GTGCAATCA-GGGTACCAAAGTACAAACAGGGGCAC-GTAAGTGCAATT-AGAGGTACTGAAGTA
*
14304970 CAAATAGGGGCACGTAA
63 CAAAAAGGGGCACGTAA
* * * * * * *
14304987 GTGCAATTAGGGATGCCAAAGTACAAACAAGGGAACGTAAGTGTAATCA-AGTGTACTAAAGTAC
1 GTGCAATCAGGG-TACCAAAGTACAAACAGGGGCACGTAAGTGCAATTAGAG-GTACTGAAGTAC
* * *
14305051 AAAAAAGGGCCCATAA
64 AAAAAGGGGCACGTAA
* * * *
14305067 GTGCAACCAAGGGCACCAAAGTACAAACAGGGGCACGTAATTGCAATTAGAGGTACTGAAGTATA
1 GTGCAATC-AGGGTACCAAAGTACAAACAGGGGCACGTAAGTGCAATTAGAGGTACTGAAGTACA
*
14305132 AACAGGGGCACGTAA
65 AAAAGGGGCACGTAA
* * *
14305147 GGGTAATCATGGGTACCGAAGTAC-AACTA-GGGCACGTAAGTGCAAT
1 GTGCAATCA-GGGTACCAAAGTACAAAC-AGGGGCACGTAAGTGCAAT
14305193 CATTCAAAAA
Statistics
Matches: 159, Mismatches: 39, Indels: 17
0.74 0.18 0.08
Matches are distributed among these distances:
79 25 0.16
80 126 0.79
81 8 0.05
ACGTcount: A:0.37, C:0.17, G:0.29, T:0.17
Consensus pattern (79 bp):
GTGCAATCAGGGTACCAAAGTACAAACAGGGGCACGTAAGTGCAATTAGAGGTACTGAAGTACAA
AAAGGGGCACGTAA
Found at i:14312943 original size:20 final size:20
Alignment explanation
Indices: 14312918--14312971 Score: 74
Period size: 20 Copynumber: 2.7 Consensus size: 20
14312908 ATCATAAACC
*
14312918 ATTCCATTTGCTTACTTTCT
1 ATTCCATTTACTTACTTTCT
14312938 ATTCCATTTACTTACTTTAC-
1 ATTCCATTTACTTACTTT-CT
*
14312958 ATTTCATTTACTTA
1 ATTCCATTTACTTA
14312972 ACATAAACAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
20 30 0.97
21 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.02, T:0.54
Consensus pattern (20 bp):
ATTCCATTTACTTACTTTCT
Found at i:14313893 original size:40 final size:40
Alignment explanation
Indices: 14313849--14313935 Score: 95
Period size: 40 Copynumber: 2.2 Consensus size: 40
14313839 GTAAGAATAG
* *
14313849 GGGCACTTAAGTGTAATAAG-GGATACCGAAGAACAAACAA
1 GGGCACTTAAGTGCAATAAGAGG-TACCAAAGAACAAACAA
* * * * *
14313889 GGGCACGTAATTGCAATCAGAGGTACCAAAGTACAAACAG
1 GGGCACTTAAGTGCAATAAGAGGTACCAAAGAACAAACAA
14313929 GGGCACT
1 GGGCACT
14313936 GATACATGCA
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
40 36 0.95
41 2 0.05
ACGTcount: A:0.40, C:0.18, G:0.26, T:0.15
Consensus pattern (40 bp):
GGGCACTTAAGTGCAATAAGAGGTACCAAAGAACAAACAA
Found at i:14313921 original size:80 final size:78
Alignment explanation
Indices: 14313789--14313935 Score: 179
Period size: 80 Copynumber: 1.9 Consensus size: 78
14313779 TGTACATTTT
* * * * * * *
14313789 AGGGTACTGAAGTACAAACAGGCCACGTAAGTGCAATTAGGGGTATCGAAGTA-AGAATAGGGGC
1 AGGGTACCGAAGAACAAACAGGCCACGTAAGTGCAATCAGAGGTACCAAAGTACA-AACAGGGGC
14313853 ACTTAAGTGTAATA
65 ACTTAAGTGTAATA
* *
14313867 AGGGATACCGAAGAACAAACAAGGGCACGTAATTGCAATCAGAGGTACCAAAGTACAAACAGGGG
1 AGGG-TACCGAAGAACAAAC-AGGCCACGTAAGTGCAATCAGAGGTACCAAAGTACAAACAGGGG
14313932 CACT
64 CACT
14313936 GATACATGCA
Statistics
Matches: 57, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
78 4 0.07
79 13 0.23
80 39 0.68
81 1 0.02
ACGTcount: A:0.39, C:0.16, G:0.28, T:0.16
Consensus pattern (78 bp):
AGGGTACCGAAGAACAAACAGGCCACGTAAGTGCAATCAGAGGTACCAAAGTACAAACAGGGGCA
CTTAAGTGTAATA
Found at i:14315035 original size:40 final size:40
Alignment explanation
Indices: 14314969--14315146 Score: 227
Period size: 40 Copynumber: 4.5 Consensus size: 40
14314959 TCCTTTATCA
* *
14314969 GGCACCTAAGTGCAATC-AGGGT-TACTGAAGTACAAACAAG
1 GGCACGTAAGTGCAATCAAGGGTAT-C-GAAGTACAAACAGG
* * *
14315009 GACACATAAGTGCAATCAAGGGTA-CTGAAGTACAAATAGG
1 GGCACGTAAGTGCAATCAAGGGTATC-GAAGTACAAACAGG
*
14315049 GGCACGTAAGTGCAATCAGGGGTATCGAAGTACAAACAGG
1 GGCACGTAAGTGCAATCAAGGGTATCGAAGTACAAACAGG
* * *
14315089 GGCACGTAAGTGCAATCAAAGGTATCAAAGTACAAATAGG
1 GGCACGTAAGTGCAATCAAGGGTATCGAAGTACAAACAGG
14315129 GGCACGTAAGTGCAATCA
1 GGCACGTAAGTGCAATCA
14315147 GGGGCAGGTA
Statistics
Matches: 123, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
40 117 0.95
41 6 0.05
ACGTcount: A:0.39, C:0.17, G:0.27, T:0.17
Consensus pattern (40 bp):
GGCACGTAAGTGCAATCAAGGGTATCGAAGTACAAACAGG
Found at i:14315102 original size:80 final size:80
Alignment explanation
Indices: 14314969--14315150 Score: 269
Period size: 80 Copynumber: 2.3 Consensus size: 80
14314959 TCCTTTATCA
* * *
14314969 GGCACCTAAGTGCAATCAGGGTTACTGAAGTACAAACAAGGACACATAAGTGCAATCAAGGGTA-
1 GGCACGTAAGTGCAATCAGGGGTACTGAAGTACAAACAAGGACACATAAGTGCAATCAAAGGTAT
*
14315033 CTGAAGTACAAATAGG
66 C-AAAGTACAAATAGG
* * *
14315049 GGCACGTAAGTGCAATCAGGGGTA-TCGAAGTACAAACAGGGGCACGTAAGTGCAATCAAAGGTA
1 GGCACGTAAGTGCAATCAGGGGTACT-GAAGTACAAACAAGGACACATAAGTGCAATCAAAGGTA
14315113 TCAAAGTACAAATAGG
65 TCAAAGTACAAATAGG
14315129 GGCACGTAAGTGCAATCAGGGG
1 GGCACGTAAGTGCAATCAGGGG
14315151 CAGGTAAGTG
Statistics
Matches: 93, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
79 1 0.01
80 91 0.98
81 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.29, T:0.16
Consensus pattern (80 bp):
GGCACGTAAGTGCAATCAGGGGTACTGAAGTACAAACAAGGACACATAAGTGCAATCAAAGGTAT
CAAAGTACAAATAGG
Found at i:14315149 original size:20 final size:20
Alignment explanation
Indices: 14314969--14315166 Score: 120
Period size: 20 Copynumber: 9.9 Consensus size: 20
14314959 TCCTTTATCA
*
14314969 GGCACCTAAGTGCAATCAGG
1 GGCACGTAAGTGCAATCAGG
** * * *
14314989 GTTAC-TGAAGTACAAACAAG
1 GGCACGT-AAGTGCAATCAGG
* * *
14315009 GACACATAAGTGCAATCAAG
1 GGCACGTAAGTGCAATCAGG
* *
14315029 GGTAC-TGAAGTACAAAT-AGG
1 GGCACGT-AAGTGC-AATCAGG
14315049 GGCACGTAAGTGCAATCAGG
1 GGCACGTAAGTGCAATCAGG
* * *
14315069 GGTATCG-AAGTACAAACAGG
1 GGCA-CGTAAGTGCAATCAGG
**
14315089 GGCACGTAAGTGCAATCAAA
1 GGCACGTAAGTGCAATCAGG
* * *
14315109 GGTATC-AAAGTACAAAT-AGG
1 GGCA-CGTAAGTGC-AATCAGG
14315129 GGCACGTAAGTGCAATCAGG
1 GGCACGTAAGTGCAATCAGG
*
14315149 GGCAGGTAAGTGCAATCA
1 GGCACGTAAGTGCAATCA
14315167 TTCAATAATT
Statistics
Matches: 134, Mismatches: 32, Indels: 24
0.71 0.17 0.13
Matches are distributed among these distances:
19 11 0.08
20 112 0.84
21 11 0.08
ACGTcount: A:0.38, C:0.17, G:0.28, T:0.17
Consensus pattern (20 bp):
GGCACGTAAGTGCAATCAGG
Found at i:14321984 original size:51 final size:50
Alignment explanation
Indices: 14321869--14322051 Score: 233
Period size: 51 Copynumber: 3.6 Consensus size: 50
14321859 TATTATTCGA
* * * *
14321869 TACACGTAGTAGCCTTCACATAGTACTACACACATGATCAAACATTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACATATGACCAAACCTTCCGG
* *
14321919 TTCACGTAGTAGCCTGCACATAGTACTACACATGTGACCAAAGCCTTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACATATGACCAAA-CCTTCCGG
* * * *
14321970 TACACATAGTAGCCTGCACATAGTACTACACATATGACCATTATCTAT-CGA
1 TACACGTAGTAGCCTGCACATAGTACTACACATATGACCA-AACCT-TCCGG
*
14322021 TACACGTAGTAGCCTGCACTTAGTACTACAC
1 TACACGTAGTAGCCTGCACATAGTACTACAC
14322052 CCGTGTTTAT
Statistics
Matches: 116, Mismatches: 14, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
50 37 0.32
51 77 0.66
52 2 0.02
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (50 bp):
TACACGTAGTAGCCTGCACATAGTACTACACATATGACCAAACCTTCCGG
Found at i:14330045 original size:50 final size:50
Alignment explanation
Indices: 14329960--14330642 Score: 222
Period size: 50 Copynumber: 13.7 Consensus size: 50
14329950 TTTGGAAAGT
* * * **
14329960 AAGACTCGCCATTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTCGCTATTGTGGCTTTAATCTGTTCCACTGCAATGTCGGGGAAGC
* * * * *
14330010 ATGATTCGCTATTGTGGCTTTAATATGTTCCACTGC-ATCGCCTGGG-AGT
1 AAGATTCGCTATTGTGGCTTTAATCTGTTCCACTGCAAT-GTCGGGGAAGC
* * ** * **
14330059 AAGATTCGCTGTTGTAGCTTTAAAATTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTCGCTATTGTGGCTTTAATCTGTTCCACTGCAATGTCGGGGAAGC
* * * * * ** * * *
14330109 GAGATTCACCAATGTGGCTTTAATCTATTCCAC-GTCACCGCCAGGGAAGT
1 AAGATTCGCTATTGTGGCTTTAATCTGTTCCACTG-CAATGTCGGGGAAGC
* ** * ** * * *
14330159 AAGATTTGCTGCTGTAGCTTTAATCAT-TTTAACTGTAATTTTGGGGAAGC
1 AAGATTCGCTATTGTGGCTTTAATC-TGTTCCACTGCAATGTCGGGGAAGC
* * * *
14330209 AAGATTCACCGA-TGTGGCTTTAATCTGTTCCACTGC-ATCGCCTGGGG-AGT
1 AAGATTC-GCTATTGTGGCTTTAATCTGTTCCACTGCAAT-GTC-GGGGAAGC
* ** ** *
14330259 AAGATTCGCTATTGTTGCTTTAATCT-TTTTATCTATAATGTCGAGGAAGC
1 AAGATTCGCTATTGTGGCTTTAATCTGTTCCA-CTGCAATGTCGGGGAAGC
* * * * * * *
14330309 AAGATTCACCATTGTGGCTTTAATTTGATCCACT--ATATCGCCAGGGAAGT
1 AAGATTCGCTATTGTGGCTTTAATCTGTTCCACTGCA-AT-GTCGGGGAAGC
* * * * * * * * **
14330359 AACACTCACCACTGTGGTTTTAGTCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTCGCTATTGTGGCTTTAATCTGTTCCACTGCAATGTCGGGGAAGC
* * ** * * * * * *
14330409 AAGATACACCGTCGTGGCATTAATCTGCTCCACTGC-ATCGCCAGGGAAGT
1 AAGATTCGCTATTGTGGCTTTAATCTGTTCCACTGCAAT-GTCGGGGAAGC
* *** * * ** * ** *
14330459 AACACTT-GCCGCTGTGGCTTTAGTCTTTTTAACAGCAATGTCATGGAGGC
1 AAGA-TTCGCTATTGTGGCTTTAATCTGTTCCACTGCAATGTCGGGGAAGC
* * ** * * * *
14330509 AAGATTCAAC-GTTGTGGCTTTAATCTGTTCCACTGCGCTGCCTGGGAGGT
1 AAGATTC-GCTATTGTGGCTTTAATCTGTTCCACTGCAATGTCGGGGAAGC
* ** * * ** * *
14330559 AAGATTTGCTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCAGGGAAGC
1 AAGATTCGCTATTGTGGCTTTAATCTGTTCCACTGCAATGTCGGGGAAGC
* **
14330609 AAGATTCACCGTTGTGGCTTTAATCTGTTCCACT
1 AAGATTCGCTATTGTGGCTTTAATCTGTTCCACT
14330643 ACACCGCTTG
Statistics
Matches: 440, Mismatches: 168, Indels: 50
0.67 0.26 0.08
Matches are distributed among these distances:
48 1 0.00
49 57 0.13
50 364 0.83
51 17 0.04
52 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (50 bp):
AAGATTCGCTATTGTGGCTTTAATCTGTTCCACTGCAATGTCGGGGAAGC
Found at i:14330207 original size:100 final size:100
Alignment explanation
Indices: 14329976--14330642 Score: 723
Period size: 100 Copynumber: 6.7 Consensus size: 100
14329966 CGCCATTGTG
* * * *
14329976 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCTATTGTGGCTTTAATATGTTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCATTGTGGCTTTAATCTGTTCC
* *
14330041 ACTGCATCGCCTGGG-AGTAAGATTCGCTGTTGTA
66 ACTGCATCGCCAGGGAAGTAAGATTCGCTGCTGTA
** * * *
14330075 GCTTTAAAATTTTTAACTGCAATGTCGGGGAAGCGAGATTCACCAATGTGGCTTTAATCTATTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCATTGTGGCTTTAATCTGTTCC
* *
14330140 AC-GTCACCGCCAGGGAAGTAAGATTTGCTGCTGTA
66 ACTG-CATCGCCAGGGAAGTAAGATTCGCTGCTGTA
* * * *
14330175 GCTTTAATCATTTTAACTGTAATTTTGGGGAAGCAAGATTCACCGA-TGTGGCTTTAATCTGTTC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACC-ATTGTGGCTTTAATCTGTTC
* * ** *
14330239 CACTGCATCGCCTGGGGAGTAAGATTCGCTATTGTT
65 CACTGCATCGCCAGGGAAGTAAGATTCGCTGCTGTA
* ** * * *
14330275 GCTTTAATCTTTTTATCTATAATGTCGAGGAAGCAAGATTCACCATTGTGGCTTTAATTTGATCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCATTGTGGCTTTAATCTGTTCC
** * * * ** *
14330340 ACTATATCGCCAGGGAAGTAACACTCACCACTGTG
66 ACTGCATCGCCAGGGAAGTAAGATTCGCTGCTGTA
* * * * * * *
14330375 GTTTTAGTCTTTTTAACTGCAATGTCGGGGAAGCAAGATACACCGTCGTGGCATTAATCTGCTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCATTGTGGCTTTAATCTGTTCC
* * *
14330440 ACTGCATCGCCAGGGAAGTAACACTT-GCCGCTGTG
66 ACTGCATCGCCAGGGAAGTAAGA-TTCGCTGCTGTA
* * ** * * *
14330475 GCTTTAGTCTTTTTAACAGCAATGTCATGGAGGCAAGATTCAACGTTGTGGCTTTAATCTGTTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCATTGTGGCTTTAATCTGTTCC
* * * *
14330540 ACTGC-GCTGCCTGGGAGGTAAGATTTGCTGCTGTA
66 ACTGCATC-GCCAGGGAAGTAAGATTCGCTGCTGTA
* * *
14330575 GCTTTAATCTTTTTAACCGCAATGTCAGGGAAGCAAGATTCACCGTTGTGGCTTTAATCTGTTCC
1 GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCATTGTGGCTTTAATCTGTTCC
14330640 ACT
66 ACT
14330643 ACACCGCTTG
Statistics
Matches: 476, Mismatches: 84, Indels: 15
0.83 0.15 0.03
Matches are distributed among these distances:
98 1 0.00
99 71 0.15
100 401 0.84
101 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (100 bp):
GCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCATTGTGGCTTTAATCTGTTCC
ACTGCATCGCCAGGGAAGTAAGATTCGCTGCTGTA
Found at i:14330820 original size:44 final size:44
Alignment explanation
Indices: 14330772--14331706 Score: 380
Period size: 44 Copynumber: 19.9 Consensus size: 44
14330762 ATCCTCTGTA
* *
14330772 CTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCT
1 CTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCT
*
14330816 CTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCGATGCGATCTACTCT
1 CTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATC--T--G--CT-C-CT
* * *** * * *
14330868 ACTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTTAATCCGCTCCA
1 -CTGTAATC-TCAGGGAGATAAGATTAC-TGGCTTCAATCTGCTCCT
* *
14330913 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCT
*
14330957 CTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTAATCT
1 CTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATC---TGC--TC----CT
* * *** * * *
14331010 ACTGTAA-CTTCAGAGAGATAAG--TCCTTTATTTTAATCCGCTCCA
1 -CTGTAATC-TCAGGGAGATAAGATTAC-TGGCTTCAATCTGCTCCT
* * *
14331054 CTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCT
*
14331098 CTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATGCGATCTAGTCT
1 CTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATC---TGC--TC----CT
* * * * *** * *
14331151 ACTGTAA-CTTTAGAGAGATAAGATCATTTATTTTAATCTGCTCCA
1 -CTGTAATC-TCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCT
* * * *
14331196 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCTATCTACTCCG
1 CTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCT
* *
14331240 CTGTAATCTCAGGGGGATAAGATTTCTGGCTTCAATCTAATGCGATCTACTCT
1 CTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATC---T--G--CT-C-CT
* * * *** * *
14331293 ACTGTAA-CTTTAGAGAGATAAGA-TCCTTTATTTTAATCTGCTCCA
1 -CTGTAATC-TCAGGGAGATAAGATTAC-TGGCTTCAATCTGCTCCT
* * *
14331338 CTGTAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCT
* **
14331382 CTGTAATCTCAGCGAGATAAGATTTTTGGCTTCAATCTGATGCAATCTACTCT
1 CTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATC---TG----CT-C-CT
* * * * *** * * *
14331435 ACTGTAA-CTTTAGAGAGATAAGATCATTTATTTTAATCTACTCCA
1 -CTGTAATC-TCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCT
** * * *
14331480 CTGTAATCTCAGGGAGATTGGATTACTAGCTTCAATCTACTCCG
1 CTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCT
* * **
14331524 CTATAATCTCAGGGGGATAAGATTTTTGGCTTCAATCTGATGAGATCTACTCT
1 CTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATC---T--G--CT-C-CT
* * *** * * *
14331577 ACTGTAA-CTTCAGAGAGATAAGA-TCCTTTATTTTAATCCGCTCCA
1 -CTGTAATC-TCAGGGAGATAAGATTAC-TGGCTTCAATCTGCTCCT
* *
14331622 CTGTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCG
1 CTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCT
* * * *
14331666 CTGTAATATTAGGGAGATAAGATTTCTAGCTTCAATCTGCT
1 CTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCT
14331707 TCCTTACACT
Statistics
Matches: 661, Mismatches: 150, Indels: 160
0.68 0.15 0.16
Matches are distributed among these distances:
43 17 0.03
44 400 0.61
45 18 0.03
46 5 0.01
47 18 0.03
48 3 0.00
49 9 0.01
50 4 0.01
51 12 0.02
52 10 0.02
53 46 0.07
54 119 0.18
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (44 bp):
CTGTAATCTCAGGGAGATAAGATTACTGGCTTCAATCTGCTCCT
Found at i:14331274 original size:142 final size:142
Alignment explanation
Indices: 14330710--14331704 Score: 1645
Period size: 142 Copynumber: 7.0 Consensus size: 142
14330700 GAGATAAGAC
* **
14330710 CTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCTTTTATTTTAATCCT-CTGTACT
1 CTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAAT-CTGCTCCACT
* *
14330774 GTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTGCTCCTCTGTAATCTCAGGGAGATAAGAT
65 GTAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT
14330839 TTCTGGCTTCAAT
130 TTCTGGCTTCAAT
* *
14330852 C-GATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
14330916 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
14330981 TCTGGCTTCAAT
131 TCTGGCTTCAAT
* * *
14330993 CTGATGCGATCTAATCTACTGTAACTTCAGAGAGATAAG-TCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
*
14331057 TAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
14331122 TCTGGCTTCAAT
131 TCTGGCTTCAAT
* *
14331134 CTGATGCGATCTAGTCTACTGTAACTTTAGAGAGATAAGATCATTTATTTTAATCTGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
* * *
14331199 TAATCTCAGGGAGATAGGATTACTGGCTTCTATCTACTCCGCTGTAATCTCAGGGGGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
14331264 TCTGGCTTCAAT
131 TCTGGCTTCAAT
*
14331276 CTAATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
* *
14331341 TAATCTCAGGGAGATAGGATTACTGGCTTTAATCTGCTCCGCTGTAATCTCAGCGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
*
14331406 TTTGGCTTCAAT
131 TCTGGCTTCAAT
* * *
14331418 CTGATGCAATCTACTCTACTGTAACTTTAGAGAGATAAGATCATTTATTTTAATCTACTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
* * * * *
14331483 TAATCTCAGGGAGATTGGATTACTAGCTTCAATCTACTCCGCTATAATCTCAGGGGGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
*
14331548 TTTGGCTTCAAT
131 TCTGGCTTCAAT
* * *
14331560 CTGATGAGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTG
1 CTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
* *
14331625 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATATTAGGGAGATAAGATT
66 TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
*
14331690 TCTAGCTTCAAT
131 TCTGGCTTCAAT
14331702 CTG
1 CTG
14331705 CTTCCTTACA
Statistics
Matches: 798, Mismatches: 52, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
140 1 0.00
141 270 0.34
142 527 0.66
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (142 bp):
CTGATGCGATCTACTCTACTGTAACTTTAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTG
TAATCTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATT
TCTGGCTTCAAT
Found at i:14333870 original size:14 final size:15
Alignment explanation
Indices: 14333851--14333884 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
14333841 TCTCATTTTC
14333851 TTTTTTCTT-TCCCT
1 TTTTTTCTTCTCCCT
*
14333865 TTTTTTCTTCTCTCT
1 TTTTTTCTTCTCCCT
14333880 TTTTT
1 TTTTT
14333885 CATTTTCATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTTTTCTTCTCCCT
Found at i:14341694 original size:51 final size:49
Alignment explanation
Indices: 14341567--14341754 Score: 205
Period size: 51 Copynumber: 3.7 Consensus size: 49
14341557 TATCATTCGA
* * * * *
14341567 TACACGTAGTTGCCTTCACATAGTACTACACACGTGATCAAACTTTCCGG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACCTACC-G
* *
14341617 TTCACTTAGTAGCCTGCACATAGTACTACACACGTGACCAAAGCCTACCAG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAA-CCTACC-G
* * * * *
14341668 TACACATAGTAGCCTGCACATAGTACTACACATGTGACCATTATCTATCG
1 TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-AACCTACCG
* *
14341718 ATACACGTAGTAGCCTGCACTTAGTAGTACACACGTG
1 -TACACGTAGTAGCCTGCACATAGTACTACACACGTG
14341755 TTTATAGGCA
Statistics
Matches: 117, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
50 38 0.32
51 78 0.67
52 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (49 bp):
TACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAAACCTACCG
Found at i:14347193 original size:40 final size:39
Alignment explanation
Indices: 14347156--14347328 Score: 162
Period size: 39 Copynumber: 4.5 Consensus size: 39
14347146 ATATCCGGAC
14347156 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAA-TCCGGGT
* *
14347196 TAAGCCCCGAAGGCCTTTGTGC---ATACTAAATCCGGGT
1 TAAG-TCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* *
14347233 TAAGTCCCGAAGGCATTCGTGCGAG-TATTAAATCCGGGT
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
* * * *
14347272 TAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAAACC-GGC
1 TAAGT-CCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
*
14347310 TATGTCCCGAAGGCATTTG
1 TAAGT-CCGAAGGCATTTG
14347329 AACGAGGAGC
Statistics
Matches: 113, Mismatches: 13, Indels: 15
0.80 0.09 0.11
Matches are distributed among these distances:
37 29 0.26
38 26 0.23
39 39 0.35
40 19 0.17
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTTGTGCGAGATACTAAATCCGGGT
Found at i:14347247 original size:77 final size:76
Alignment explanation
Indices: 14347109--14347328 Score: 205
Period size: 77 Copynumber: 2.8 Consensus size: 76
14347099 TTGAATGCTG
* * * * * * *
14347109 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGCCCCGAAGGCATTGTG-TGAGT-ACTAAAACCGG-CTAAG-TCCCGAAGGCATT
14347173 TGTGCGAG-ATACAAA
62 TGTGCGAGTAT-CAAA
* * * *
14347188 TTCCGGGTTAAGCCCCGAAGGCCTT-TGTGCA-TACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 -TCCGGGTTAAGCCCCGAAGGCATTGTGTG-AGTACTAAAACC-GGCTAAGTCCCGAAGGCATTT
*
14347251 GTGCGAGTATTAAA
63 GTGCGAGTATCAAA
* *
14347265 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGCCCCGAAGGCATTGTGTGAG-TACTAAAACCGGCTAAGTCCCGAAGGCATTTG
14347329 AACGAGGAGC
Statistics
Matches: 118, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
76 24 0.20
77 55 0.47
78 15 0.13
79 3 0.03
80 21 0.18
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (76 bp):
TCCGGGTTAAGCCCCGAAGGCATTGTGTGAGTACTAAAACCGGCTAAGTCCCGAAGGCATTTGTG
CGAGTATCAAA
Found at i:14347273 original size:39 final size:39
Alignment explanation
Indices: 14347109--14347328 Score: 211
Period size: 40 Copynumber: 5.7 Consensus size: 39
14347099 TTGAATGCTG
* * *
14347109 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTAAA
*
14347149 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTAAA
* * *
14347188 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGC-A-TACTAAA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
* * *
14347226 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTATTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
* *
14347265 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTAAA
* *
14347304 ACC-GGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
14347329 AACGAGGAGC
Statistics
Matches: 152, Mismatches: 18, Indels: 21
0.80 0.09 0.11
Matches are distributed among these distances:
37 29 0.19
38 27 0.18
39 42 0.28
40 45 0.30
41 9 0.06
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTAAA
Found at i:14355149 original size:39 final size:40
Alignment explanation
Indices: 14355014--14355237 Score: 242
Period size: 40 Copynumber: 5.7 Consensus size: 40
14355004 TTGAATGCTG
* * * * *
14355014 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** *
14355054 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
14355093 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAG-TACTAAA
1 -TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
14355133 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
14355173 TCCGGGTTAAGTCCCGAAGGCA-TTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* * *
14355212 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
14355238 AACGAGGAGC
Statistics
Matches: 157, Mismatches: 20, Indels: 14
0.82 0.10 0.07
Matches are distributed among these distances:
39 67 0.43
40 82 0.52
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:14355154 original size:79 final size:78
Alignment explanation
Indices: 14355014--14355237 Score: 254
Period size: 79 Copynumber: 2.8 Consensus size: 78
14355004 TTGAATGCTG
* * * * *
14355014 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGC-GAGT-ACTAAATCCGGGCTAAG-TCCCGAAGGCATT
14355078 TGTGCGAGATA-CAAA
63 TGTGCGAGATATCAAA
* * *
14355093 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 -TCCGGGTTAAGTCCCGAAGG-CTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTT
* *
14355158 GTGCGAGTTATTAAA
64 GTGCGAGATATCAAA
* * * *
14355173 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAG-TACTAAATCCGGGCTAAGTCCCGAAGGCATTTG
14355238 AACGAGGAGC
Statistics
Matches: 123, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
78 10 0.08
79 81 0.66
80 24 0.20
81 8 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (78 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCGAGTACTAAATCCGGGCTAAGTCCCGAAGGCATTTGT
GCGAGATATCAAA
Found at i:14355255 original size:79 final size:79
Alignment explanation
Indices: 14355094--14355270 Score: 198
Period size: 79 Copynumber: 2.3 Consensus size: 79
14355084 AGATACAAAT
* * * *
14355094 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
** * *
14355159 TGCGAGTTATTAAA
66 AACGAGTGACTAAA
* * *
14355173 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAG-TACTAAAACCGGGCTAAGTCCCGAAGGCATTC
*
14355237 GAACGAG-GAGCTATA
65 GAACGAGTGA-CTAAA
*
14355252 TCC-GGTTAAATCCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
14355271 TACGTGATTT
Statistics
Matches: 83, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
78 25 0.30
79 58 0.70
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGTACTAAAACCGGGCTAAGTCCCGAAGGCATTCG
AACGAGTGACTAAA
Found at i:14357016 original size:17 final size:17
Alignment explanation
Indices: 14356994--14357029 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
14356984 CTAATACAAA
14356994 AATAATTATAAA-AAAAT
1 AATAATT-TAAATAAAAT
14357011 AATAATTTAAATAAAAT
1 AATAATTTAAATAAAAT
14357028 AA
1 AA
14357030 ATTAATAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 4 0.22
17 14 0.78
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (17 bp):
AATAATTTAAATAAAAT
Found at i:14365829 original size:16 final size:17
Alignment explanation
Indices: 14365804--14365838 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
14365794 AGAGCTCATA
14365804 TCATCCCTCATCC-CTC
1 TCATCCCTCATCCTCTC
*
14365820 TCATCTCTCATCCTCTC
1 TCATCCCTCATCCTCTC
14365837 TC
1 TC
14365839 TCAACTCTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.11, C:0.51, G:0.00, T:0.37
Consensus pattern (17 bp):
TCATCCCTCATCCTCTC
Found at i:14376554 original size:14 final size:14
Alignment explanation
Indices: 14376531--14376586 Score: 67
Period size: 14 Copynumber: 3.9 Consensus size: 14
14376521 AGAGCTCATA
* *
14376531 TCATCCCTCAACCC
1 TCATCTCTCATCCC
14376545 TCATCTCTCATCCTTC
1 TCATCTCTCATCC--C
*
14376561 TCATCTCTCATCTC
1 TCATCTCTCATCCC
14376575 TCATCTCTCATC
1 TCATCTCTCATC
14376587 TTCTCTCTCA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
14 24 0.65
16 13 0.35
ACGTcount: A:0.16, C:0.46, G:0.00, T:0.38
Consensus pattern (14 bp):
TCATCTCTCATCCC
Found at i:14376564 original size:9 final size:7
Alignment explanation
Indices: 14376544--14376602 Score: 77
Period size: 7 Copynumber: 8.4 Consensus size: 7
14376534 TCCCTCAACC
14376544 CTCATCT
1 CTCATCT
14376551 CTCATCCTT
1 CTCAT-C-T
14376560 CTCATCT
1 CTCATCT
14376567 CTCATCT
1 CTCATCT
14376574 CTCATCT
1 CTCATCT
14376581 CTCATCT
1 CTCATCT
14376588 -TC-TCT
1 CTCATCT
*
14376593 CTCAACT
1 CTCATCT
14376600 CTC
1 CTC
14376603 CTAGCTCTCA
Statistics
Matches: 47, Mismatches: 1, Indels: 8
0.84 0.02 0.14
Matches are distributed among these distances:
5 3 0.06
6 4 0.09
7 32 0.68
8 2 0.04
9 6 0.13
ACGTcount: A:0.14, C:0.44, G:0.00, T:0.42
Consensus pattern (7 bp):
CTCATCT
Found at i:14376585 original size:21 final size:21
Alignment explanation
Indices: 14376544--14376602 Score: 77
Period size: 19 Copynumber: 2.8 Consensus size: 21
14376534 TCCCTCAACC
14376544 CTCATCTCTCATCCTTCTCATCT
1 CTCATCTCTCAT-C-TCTCATCT
14376567 CTCATCTCTCATCTCTCATCT
1 CTCATCTCTCATCTCTCATCT
*
14376588 -TC-TCTCTCAACTCTC
1 CTCATCTCTCATCTCTC
14376603 CTAGCTCTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
19 12 0.34
20 2 0.06
21 8 0.23
22 1 0.03
23 12 0.34
ACGTcount: A:0.14, C:0.44, G:0.00, T:0.42
Consensus pattern (21 bp):
CTCATCTCTCATCTCTCATCT
Found at i:14384942 original size:135 final size:136
Alignment explanation
Indices: 14384796--14385067 Score: 413
Period size: 135 Copynumber: 2.0 Consensus size: 136
14384786 GACCGGCAGT
* *
14384796 CGGCGCAGTGGCTGACGACTGGCTGATGCCCTAACCTTGGCCGGAGAACTAGGGAGGGGAGAGCC
1 CGGCGCAGTGGCTGACGACTGACTGATGCCCTAACCTTGGCCAGAGAACT-GGGAGGGGAGAGCC
* *
14384861 TTTTTTAAAAGGATTTCTG-TTTTTTT-AAACAATGAGAAAATGACTTTTTTTAAATTTTTTGGC
65 TTTTTTAAAAGGATTTCTGTTTTTTTTAAAACAATGAGAAAATGAATTTTTTTAAAGTTTTTGGC
14384924 TTAAAGC
130 TTAAAGC
* * *
14384931 CGGCGCGGTGGCTGACGACTGACTGATTCCCTGACCTTGGCCAGAGAACTGGGAGGGGAGAGCCT
1 CGGCGCAGTGGCTGACGACTGACTGATGCCCTAACCTTGGCCAGAGAACTGGGAGGGGAGAGCCT
* *
14384996 TTTTTAAAAGGATTTCTGTTTTTTTTTAAAAAACAATGAGAAAATTAATTTTTTTTAAGTTTTTG
66 TTTTTAAAAGGATTTCTG-TTTTTTTT--AAAACAATGAGAAAATGAATTTTTTTAAAGTTTTTG
14385061 GCTTAAA
128 GCTTAAA
14385068 TAGCCTAGTG
Statistics
Matches: 123, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
134 33 0.27
135 45 0.37
136 7 0.06
139 38 0.31
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.33
Consensus pattern (136 bp):
CGGCGCAGTGGCTGACGACTGACTGATGCCCTAACCTTGGCCAGAGAACTGGGAGGGGAGAGCCT
TTTTTAAAAGGATTTCTGTTTTTTTTAAAACAATGAGAAAATGAATTTTTTTAAAGTTTTTGGCT
TAAAGC
Found at i:14395900 original size:100 final size:99
Alignment explanation
Indices: 14395770--14395955 Score: 273
Period size: 100 Copynumber: 1.9 Consensus size: 99
14395760 AAGCCACAAT
** * * * *
14395770 GGCGAATCTTGTTTCCCTGGCGGTGTAGTGGAACAGATTGAAGCTATGACGACAAATCTTGTTTC
1 GGCGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGAATGAAGCTACGACGACAAATCCTGTTT-
14395835 CCCAACATTGCAATTAAAAAGATTAAAGTCGCAAC
65 CCCAACATTGCAATTAAAAAGATTAAAGTCGCAAC
* * *
14395870 GGCGAATCTTACTTCCCTGGCAGTGTAGTGGAACGGAATGAAGCTACGACGGCGAATCCTGTTTC
1 GGCGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGAATGAAGCTACGACGACAAATCCTGTTTC
*
14395935 CCAACATTGCAATTTAAAAGA
66 CCAACATTGCAATTAAAAAGA
14395956 CTGAAGATGG
Statistics
Matches: 76, Mismatches: 10, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
99 21 0.28
100 55 0.72
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (99 bp):
GGCGAATCTTACTTCCCTGGCAGTGTAGTGGAACAGAATGAAGCTACGACGACAAATCCTGTTTC
CCAACATTGCAATTAAAAAGATTAAAGTCGCAAC
Found at i:14396147 original size:45 final size:45
Alignment explanation
Indices: 14396096--14396219 Score: 176
Period size: 45 Copynumber: 2.8 Consensus size: 45
14396086 GATCGCATCT
* **
14396096 AGTCTTATCTCCTTGAAGTTGCAATGGAGCAGACCCAAGAAAGTG
1 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCA
* *
14396141 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCA
1 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCA
* * *
14396186 AGTCTTATCCCCTTGAAATTGCAGTGGGGCAGAC
1 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGAC
14396220 TAAATAAACA
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
45 70 1.00
ACGTcount: A:0.29, C:0.22, G:0.25, T:0.24
Consensus pattern (45 bp):
AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACCCAAGAAAGCA
Found at i:14397961 original size:20 final size:20
Alignment explanation
Indices: 14397936--14397974 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
14397926 ATTAAATAAT
14397936 GTAATTAGTTTTT-TATATAC
1 GTAATTA-TTTTTATATATAC
14397956 GTAATTATTTTTATATATA
1 GTAATTATTTTTATATATA
14397975 TATGTATATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.33, C:0.03, G:0.08, T:0.56
Consensus pattern (20 bp):
GTAATTATTTTTATATATAC
Found at i:14397998 original size:20 final size:21
Alignment explanation
Indices: 14397975--14398016 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
14397965 TTTATATATA
14397975 TATGT-ATATTTATTATTTTT
1 TATGTAATATTTATTATTTTT
*
14397995 TATGTACATATTTATTCTTTTT
1 TATGTA-ATATTTATTATTTTT
14398017 AACGAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
22 14 0.74
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.67
Consensus pattern (21 bp):
TATGTAATATTTATTATTTTT
Found at i:14418795 original size:27 final size:27
Alignment explanation
Indices: 14418764--14418852 Score: 133
Period size: 27 Copynumber: 3.3 Consensus size: 27
14418754 AGAGGTTAAG
*
14418764 AAATGACTGAATTACCCCCACAGGGTA
1 AAATGACTGAATTACCCCCATAGGGTA
* *
14418791 AAATGACCGAATTACCCTCATAGGGTA
1 AAATGACTGAATTACCCCCATAGGGTA
* *
14418818 AAATGACTGAAATACCCCTATAGGGTA
1 AAATGACTGAATTACCCCCATAGGGTA
14418845 AAATGACT
1 AAATGACT
14418853 CTTATACACC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21
Consensus pattern (27 bp):
AAATGACTGAATTACCCCCATAGGGTA
Found at i:14419256 original size:28 final size:28
Alignment explanation
Indices: 14419216--14419314 Score: 171
Period size: 28 Copynumber: 3.5 Consensus size: 28
14419206 ACTGTACTGA
* *
14419216 TACTATATTGGGCTTAGGCCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
14419244 TACTGTATTGGGCTAAGGCCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
*
14419272 TACTGTATTGGGCTAAGGCCCACATTAT
1 TACTGTATTGGGCTAAGGCCCACATTGT
14419300 TACTGTATTGGGCTA
1 TACTGTATTGGGCTA
14419315 CTGTTACTGC
Statistics
Matches: 68, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 68 1.00
ACGTcount: A:0.22, C:0.20, G:0.23, T:0.34
Consensus pattern (28 bp):
TACTGTATTGGGCTAAGGCCCACATTGT
Found at i:14424904 original size:27 final size:27
Alignment explanation
Indices: 14424870--14424967 Score: 135
Period size: 27 Copynumber: 3.6 Consensus size: 27
14424860 CTTGGGGTGA
14424870 AAAATTACTAAAATACCCTCGAAGGGT
1 AAAATTACTAAAATACCCTCGAAGGGT
*
14424897 AAAATTACTGAAATACCCTCGAAGGGT
1 AAAATTACTAAAATACCCTCGAAGGGT
* * *
14424924 AAAATTA-TCGAAATACCCTCAAAGGAT
1 AAAATTACT-AAAATACCCTCGAAGGGT
*
14424951 AAAATTACCAAAATACC
1 AAAATTACTAAAATACC
14424968 GTTGAAAGGT
Statistics
Matches: 64, Mismatches: 5, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
26 1 0.02
27 63 0.98
ACGTcount: A:0.47, C:0.19, G:0.12, T:0.21
Consensus pattern (27 bp):
AAAATTACTAAAATACCCTCGAAGGGT
Found at i:14424954 original size:54 final size:54
Alignment explanation
Indices: 14424880--14424996 Score: 144
Period size: 54 Copynumber: 2.2 Consensus size: 54
14424870 AAAATTACTA
* * ** * * *
14424880 AAATACCCTCGAAGGGTAAAATTACTGAAATACCCTCGAAGGGTAAAATTATCG
1 AAATACCCTCAAAGGATAAAATTACCAAAATACCCTCGAAAGGTAAAATGACCG
* * *
14424934 AAATACCCTCAAAGGATAAAATTACCAAAATACCGTTGAAAGGTACAATGACCG
1 AAATACCCTCAAAGGATAAAATTACCAAAATACCCTCGAAAGGTAAAATGACCG
14424988 AAATACCCT
1 AAATACCCT
14424997 TATGGGTTGA
Statistics
Matches: 53, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.44, C:0.21, G:0.15, T:0.21
Consensus pattern (54 bp):
AAATACCCTCAAAGGATAAAATTACCAAAATACCCTCGAAAGGTAAAATGACCG
Found at i:14431510 original size:26 final size:24
Alignment explanation
Indices: 14431476--14431534 Score: 57
Period size: 23 Copynumber: 2.4 Consensus size: 24
14431466 AATATGTATG
* * *
14431476 TTTAATAATATTGAAAATTATAATAT
1 TTTATTAATATTGAAAA--ATAAAAA
*
14431502 TTTATTAAT-TTTAAAAATAAAAA
1 TTTATTAATATTGAAAAATAAAAA
14431525 TTTATTAATA
1 TTTATTAATA
14431535 ATATAATAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 14 0.50
25 6 0.21
26 8 0.29
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (24 bp):
TTTATTAATATTGAAAAATAAAAA
Found at i:14435809 original size:27 final size:27
Alignment explanation
Indices: 14435779--14435994 Score: 222
Period size: 27 Copynumber: 8.0 Consensus size: 27
14435769 TGAAATATTG
*
14435779 TCGAAGGGTAAAATTACCGAATTACCC
1 TCGAAGGGTAAAATTACCGAAATACCC
*
14435806 TCGAAGGGTAAAATTATCGAAATACCC
1 TCGAAGGGTAAAATTACCGAAATACCC
* ** *
14435833 TCGCAGGGTAAAATTACTTAAATACCG
1 TCGAAGGGTAAAATTACCGAAATACCC
* *
14435860 TCGAAGGGTAAAATTACTGAAATAACC
1 TCGAAGGGTAAAATTACCGAAATACCC
** * *
14435887 TTAAAGGGTAAAATTATCAAAATACCC
1 TCGAAGGGTAAAATTACCGAAATACCC
* *
14435914 -CTGAAAGGTAAAATTATCGAAATACCC
1 TC-GAAGGGTAAAATTACCGAAATACCC
* * *
14435941 TAGAAGGATAAAATTATCGAAATA--C
1 TCGAAGGGTAAAATTACCGAAATACCC
*
14435966 TCAGAAAGGGTAAAATGACCGAAATACCC
1 TC-G-AAGGGTAAAATTACCGAAATACCC
14435995 CTATAGCGTA
Statistics
Matches: 155, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
25 2 0.01
26 1 0.01
27 151 0.97
29 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.22
Consensus pattern (27 bp):
TCGAAGGGTAAAATTACCGAAATACCC
Found at i:14436007 original size:54 final size:53
Alignment explanation
Indices: 14435785--14436022 Score: 166
Period size: 54 Copynumber: 4.4 Consensus size: 53
14435775 ATTGTCGAAG
* * * * *
14435785 GGTAAAATTACCGAATTACCCTC-G-AAGGGTAAAATTATCGAAATACCCTCGCAG
1 GGTAAAATTATCGAAATACCC-CAGAAAGGGTAAAATTACCGAAATACCCT--AAA
* * * *
14435839 GGTAAAATTA-CTTAAATACCGTC-G-AAGGGTAAAATTACTGAAATAACCTTAAA
1 GGTAAAATTATC-GAAATACC-CCAGAAAGGGTAAAATTACCGAAAT-ACCCTAAA
* * *
14435892 GGGTAAAATTATCAAAATACCCCTGAAA-GGTAAAATTATCGAAATACCCTAGAA
1 -GGTAAAATTATCGAAATACCCCAGAAAGGGTAAAATTACCGAAATACCCTA-AA
* * *
14435946 GGATAAAATTATCGAAATA-CTCAGAAAGGGTAAAATGACCGAAATACCCCTATA
1 GG-TAAAATTATCGAAATACCCCAGAAAGGGTAAAATTACCGAAATA-CCCTAAA
* **
14436000 GCGTAAAATGATCGTTATACCCC
1 G-GTAAAATTATCGAAATACCCC
14436023 TAGGAGATGA
Statistics
Matches: 148, Mismatches: 23, Indels: 25
0.76 0.12 0.13
Matches are distributed among these distances:
53 16 0.11
54 117 0.79
55 15 0.10
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.23
Consensus pattern (53 bp):
GGTAAAATTATCGAAATACCCCAGAAAGGGTAAAATTACCGAAATACCCTAAA
Found at i:14438558 original size:24 final size:25
Alignment explanation
Indices: 14438531--14438577 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
14438521 ACTGATCATA
*
14438531 GAGAGAATTGAGGA-AGGATATTTG
1 GAGAGAATTGAGGAGAGAATATTTG
*
14438555 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAGAGAATATT
14438578 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.38, C:0.00, G:0.36, T:0.26
Consensus pattern (25 bp):
GAGAGAATTGAGGAGAGAATATTTG
Found at i:14439380 original size:27 final size:27
Alignment explanation
Indices: 14439158--14439379 Score: 320
Period size: 27 Copynumber: 8.2 Consensus size: 27
14439148 AGAGGTTAAT
* *
14439158 AAATGATCGAATTAGCCCCACAAGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
* *
14439185 AAATGATTGAATTACCCCCATAGGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
*
14439212 AAATGATCGAATTACCCCCACAGTGTA
1 AAATGATCGAATTACCCCCACAGGGTA
* *
14439239 AGATGA-CTGAATTAACCCCACAGGGTA
1 AAATGATC-GAATTACCCCCACAGGGTA
*
14439266 AAATGATCGAATTACCCCCATAGGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
*
14439293 AAATAATCGAATTACCCCCACAGGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
*
14439320 AAATAATCGAATTACCCCCACAGGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
* *
14439347 AAATGACCGAATTACCCCCATAGGGTA
1 AAATGATCGAATTACCCCCACAGGGTA
14439374 AAATGA
1 AAATGA
14439380 CTGTTATACC
Statistics
Matches: 175, Mismatches: 18, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
26 1 0.01
27 173 0.99
28 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (27 bp):
AAATGATCGAATTACCCCCACAGGGTA
Found at i:14439849 original size:33 final size:28
Alignment explanation
Indices: 14439745--14439835 Score: 139
Period size: 28 Copynumber: 3.2 Consensus size: 28
14439735 ACTGTACTGA
*
14439745 TACTGTATTGGGACCTAAGGCTCACATTGT
1 TACTGTATTGGG--CTAAGGCCCACATTGT
14439775 TACTGTATTGGGCTAAGGCCCACATTGT
1 TACTGTATTGGGCTAAGGCCCACATTGT
*
14439803 TACTGTATTGGGCTAAGGCCCACACTG-
1 TACTGTATTGGGCTAAGGCCCACATTGT
14439830 TACTGT
1 TACTGT
14439836 TACTGAATAG
Statistics
Matches: 59, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
27 6 0.10
28 41 0.69
30 12 0.20
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (28 bp):
TACTGTATTGGGCTAAGGCCCACATTGT
Found at i:14439863 original size:33 final size:34
Alignment explanation
Indices: 14439800--14439868 Score: 86
Period size: 33 Copynumber: 2.1 Consensus size: 34
14439790 AGGCCCACAT
* * *
14439800 TGTTACTGTATTGGGCTAAGGCCCACACTGT-AC
1 TGTTACTGAATAGGGCTAAGGCCAACACTGTCAC
* *
14439833 TGTTACTGAATAGGGCTCAGGCCAATACTGTCAC
1 TGTTACTGAATAGGGCTAAGGCCAACACTGTCAC
14439867 TG
1 TG
14439869 CTTGTTGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
33 26 0.87
34 4 0.13
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (34 bp):
TGTTACTGAATAGGGCTAAGGCCAACACTGTCAC
Found at i:14445834 original size:22 final size:21
Alignment explanation
Indices: 14445775--14445839 Score: 58
Period size: 22 Copynumber: 3.0 Consensus size: 21
14445765 TGCCAGTAAT
14445775 TAGAATGGCTAAGAGCTATAAA
1 TAGAATGGCTAA-AGCTATAAA
* * * *
14445797 CAGGATAGTTATAAGCTATAAA
1 TAGAATGGCTA-AAGCTATAAA
*
14445819 TAGAATGGCTACAAGCCATAA
1 TAGAATGGCTA-AAGCTATAA
14445840 GTACAATAAT
Statistics
Matches: 32, Mismatches: 10, Indels: 2
0.73 0.23 0.05
Matches are distributed among these distances:
22 31 0.97
23 1 0.03
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.23
Consensus pattern (21 bp):
TAGAATGGCTAAAGCTATAAA
Found at i:14445923 original size:32 final size:31
Alignment explanation
Indices: 14445882--14445975 Score: 89
Period size: 32 Copynumber: 2.9 Consensus size: 31
14445872 TAGCAGTGAT
*
14445882 ATGATCGGCACAAAGCCATCAATAACGGTAAC
1 ATGACCGGCACAAA-CCATCAATAACGGTAAC
* * * *
14445914 ATTACCGGCACACAACCATCGATAATGGTAAT
1 ATGACCGGCACA-AACCATCAATAACGGTAAC
* * *
14445946 GTGATCGGGACAAATCCATCAATAACGGTA
1 ATGACCGGCACAAA-CCATCAATAACGGTA
14445976 CTATGATTAG
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
31 2 0.04
32 45 0.92
33 2 0.04
ACGTcount: A:0.38, C:0.23, G:0.19, T:0.19
Consensus pattern (31 bp):
ATGACCGGCACAAACCATCAATAACGGTAAC
Found at i:14446189 original size:24 final size:23
Alignment explanation
Indices: 14446162--14446239 Score: 102
Period size: 24 Copynumber: 3.3 Consensus size: 23
14446152 GCTCAGAATT
14446162 AGTCATTCAAATCACAGACAAATC
1 AGTCATTCAAA-CACAGACAAATC
*
14446186 AGTCATACCAAACACAGACAAATC
1 AGTCAT-TCAAACACAGACAAATC
* *
14446210 AGTCATTCAACCACAGACAAAAC
1 AGTCATTCAAACACAGACAAATC
*
14446233 AATCATT
1 AGTCATT
14446240 TAACCAAGAG
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
23 20 0.42
24 24 0.50
25 4 0.08
ACGTcount: A:0.47, C:0.27, G:0.08, T:0.18
Consensus pattern (23 bp):
AGTCATTCAAACACAGACAAATC
Found at i:14461837 original size:18 final size:17
Alignment explanation
Indices: 14461814--14461848 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
14461804 CAAAATAAGT
14461814 ATAATAAAATAAAATAAA
1 ATAAT-AAATAAAATAAA
*
14461832 ATAATAAATAAAGTAAA
1 ATAATAAATAAAATAAA
14461849 GAAAACAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.74, C:0.00, G:0.03, T:0.23
Consensus pattern (17 bp):
ATAATAAATAAAATAAA
Found at i:14461853 original size:21 final size:24
Alignment explanation
Indices: 14461805--14461853 Score: 59
Period size: 21 Copynumber: 2.2 Consensus size: 24
14461795 TATTAATATC
*
14461805 AAAATAAGTATAATAAAATAAAAT
1 AAAATAAGTATAATAAAATAAAAG
*
14461829 AAAATAA-TA-AATAAAGT-AAAG
1 AAAATAAGTATAATAAAATAAAAG
14461850 AAAA
1 AAAA
14461854 CAATTTGAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 7 0.30
22 7 0.30
23 2 0.09
24 7 0.30
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.20
Consensus pattern (24 bp):
AAAATAAGTATAATAAAATAAAAG
Found at i:14468008 original size:23 final size:24
Alignment explanation
Indices: 14467975--14468027 Score: 67
Period size: 23 Copynumber: 2.3 Consensus size: 24
14467965 TCAAGCATCC
14467975 CTCATCCCTCATCC-CTCATCTAT
1 CTCATCCCTCATCCGCTCATCTAT
*
14467998 CTCATCTCTCATCCTGCTCATC--T
1 CTCATCCCTCATCC-GCTCATCTAT
14468021 CTCATCC
1 CTCATCC
14468028 TCTCTCTCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 20 0.77
25 6 0.23
ACGTcount: A:0.15, C:0.47, G:0.02, T:0.36
Consensus pattern (24 bp):
CTCATCCCTCATCCGCTCATCTAT
Found at i:14468017 original size:9 final size:8
Alignment explanation
Indices: 14467970--14468031 Score: 62
Period size: 7 Copynumber: 8.1 Consensus size: 8
14467960 CTTTTTCAAG
14467970 CATCC-CT
1 CATCCTCT
14467977 CATCC-CT
1 CATCCTCT
14467984 CATCC-CT
1 CATCCTCT
*
14467991 CATCTATCT
1 CATC-CTCT
14468000 CAT-CTCT
1 CATCCTCT
14468007 CATCCTGCT
1 CATCCT-CT
14468016 CAT-CTCT
1 CATCCTCT
14468023 CATCCTCT
1 CATCCTCT
14468031 C
1 C
14468032 TCTCAACTCT
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
7 29 0.60
8 9 0.19
9 10 0.21
ACGTcount: A:0.15, C:0.48, G:0.02, T:0.35
Consensus pattern (8 bp):
CATCCTCT
Found at i:14468017 original size:16 final size:16
Alignment explanation
Indices: 14467998--14468028 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
14467988 CCTCATCTAT
14467998 CTCATCTCTCATCCTG
1 CTCATCTCTCATCCTG
14468014 CTCATCTCTCATCCT
1 CTCATCTCTCATCCT
14468029 CTCTCTCAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.45, G:0.03, T:0.39
Consensus pattern (16 bp):
CTCATCTCTCATCCTG
Found at i:14477125 original size:27 final size:27
Alignment explanation
Indices: 14477107--14478084 Score: 1088
Period size: 27 Copynumber: 36.4 Consensus size: 27
14477097 GGTATAACAA
*
14477107 TCATTTTACCCTATGGGGGCATCTT-GG
1 TCATTTTACCCTATGGGGGTAT-TTCGG
* * *
14477134 TTATTTTACCCTATGGGGGCATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
14477161 TCATTTTACCCTATGGGGGTAATTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
14477188 TCATTTTTCCCTATGGGGGCATCTT-GG
1 TCATTTTACCCTATGGGGGTAT-TTCGG
* * *
14477215 TCATTTTACCCTATGAGGGTACTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
14477242 TCATTCTACCCTATAGGGGTAATTT-GG
1 TCATTTTACCCTATGGGGGT-ATTTCGG
**
14477269 TCATTTTACCCTATGGGGGTATTTCAA
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
14477296 TCATTTTACCCTATAGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
14477323 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
*
14477350 TCATTTTACCCTAT-GGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * **
14477376 TCGTTCTACCCTATGGGGGTATTTTAG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
14477403 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* ** * **
14477430 TCATTTTATCCTATAAGTGTATTTCAA
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
14477457 TCATTTTACCTTATAGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
** *
14477484 TCATTTTACCCTATAAGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
14477511 TCATTTTACCCTATGAGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * * *
14477538 TCATTCTATCCTATGAGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
14477565 TCAGTTTACCCTAT-GAGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * * *
14477591 TCGTTCTACCCTATGGGGGTATTTTGA
1 TCATTTTACCCTATGGGGGTATTTCGG
**
14477618 TCATTTTACCCTATGGGGGTATTTTAG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
14477645 TTATTTTACCCTATGGGGGCATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
** *
14477672 TCATTTTACCCTATACGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
14477699 TCATTTTATCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
14477726 TCATTCTACCTTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
14477753 TCATTTTACCCTATGAGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
14477780 TCATTTTACCCTGTGAGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
14477807 TCATTCTACCCTATGGGGGTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
14477834 TCATTCTACCCTATGGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
14477861 TCA--TTACACTATGAGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * *
14477886 TCATTCTACCCTATGGGGCTATTTCAG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
14477913 TTATTTTACCCTATGGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* **
14477940 TTATTTTACCCTATAAGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* *
14477967 TCATTTTATCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGG
*
14477994 TCATTTTACCCTATGAGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGG
* * * * *
14478021 TCATTCTATCCTCTGGGGATATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
*
14478048 TCATTTTACCCTATGGGGGTATTTTGG
1 TCATTTTACCCTATGGGGGTATTTCGG
14478075 TCATTTTACC
1 TCATTTTACC
14478085 TATTTTGGGG
Statistics
Matches: 801, Mismatches: 141, Indels: 18
0.83 0.15 0.02
Matches are distributed among these distances:
25 21 0.03
26 49 0.06
27 726 0.91
28 5 0.01
ACGTcount: A:0.19, C:0.18, G:0.21, T:0.42
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCGG
Found at i:14482266 original size:72 final size:72
Alignment explanation
Indices: 14482149--14482293 Score: 209
Period size: 72 Copynumber: 2.0 Consensus size: 72
14482139 TACCTATGCT
* *
14482149 TTCTTGTGCACCAAAACTATCTCTAAGATCAAAGATATGATTTTGATATCCCAAATCAGTATGGA
1 TTCTTCTGCACCAAAACTATCTCCAAGATCAAAGATATGATTTTGATATCCCAAATCAGTATGGA
*
14482214 TCAAGTA
66 CCAAGTA
* * * * * *
14482221 TTCTTCTGCGCCAAAAGTATCTCCAGGATCAAAGATATTATTTTGATATCTCGAATCAGTATGGA
1 TTCTTCTGCACCAAAACTATCTCCAAGATCAAAGATATGATTTTGATATCCCAAATCAGTATGGA
14482286 CCAAGTA
66 CCAAGTA
14482293 T
1 T
14482294 CTCTCCTTGA
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
72 64 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.32
Consensus pattern (72 bp):
TTCTTCTGCACCAAAACTATCTCCAAGATCAAAGATATGATTTTGATATCCCAAATCAGTATGGA
CCAAGTA
Found at i:14482726 original size:11 final size:11
Alignment explanation
Indices: 14482712--14482802 Score: 68
Period size: 11 Copynumber: 8.5 Consensus size: 11
14482702 TTTTTTTTAA
14482712 TTTTAAAATAC
1 TTTTAAAATAC
14482723 TTTTAAAATAC
1 TTTTAAAATAC
*
14482734 TTTTTTTAAAT--
1 --TTTTAAAATAC
* *
14482745 TTTT---TTAA
1 TTTTAAAATAC
*
14482753 TTTTAAAATAT
1 TTTTAAAATAC
*
14482764 TTTTAAAATAT
1 TTTTAAAATAC
14482775 TTTTAAAATA-
1 TTTTAAAATAC
14482785 TTGTTAAAATAC
1 TT-TTAAAATAC
14482797 TTTTAA
1 TTTTAA
14482803 TTTTTTTAAT
Statistics
Matches: 67, Mismatches: 4, Indels: 18
0.75 0.04 0.20
Matches are distributed among these distances:
6 1 0.01
8 4 0.06
9 4 0.06
10 2 0.03
11 46 0.69
12 2 0.03
13 8 0.12
ACGTcount: A:0.41, C:0.03, G:0.01, T:0.55
Consensus pattern (11 bp):
TTTTAAAATAC
Found at i:14482748 original size:41 final size:41
Alignment explanation
Indices: 14482694--14482778 Score: 136
Period size: 41 Copynumber: 2.1 Consensus size: 41
14482684 AATATTTTAA
*
14482694 TTTTTAATTTTTTTTTAATTTTAAAATACTTTTAAAATACTT
1 TTTTTAATATTTTTTTAATTTTAAAATACTTTTAAAATA-TT
*
14482736 TTTTTAA-ATTTTTTTAATTTTAAAATATTTTTAAAATATT
1 TTTTTAATATTTTTTTAATTTTAAAATACTTTTAAAATATT
14482776 TTT
1 TTT
14482779 AAAATATTGT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
40 5 0.12
41 29 0.71
42 7 0.17
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (41 bp):
TTTTTAATATTTTTTTAATTTTAAAATACTTTTAAAATATT
Found at i:14482761 original size:17 final size:17
Alignment explanation
Indices: 14482736--14482828 Score: 53
Period size: 17 Copynumber: 5.0 Consensus size: 17
14482726 TAAAATACTT
* *
14482736 TTTTTAAATTTTTTTAA
1 TTTTAAAATATTTTTAA
14482753 TTTTAAAATATTTTTAAAATA
1 TTTTAAAATATTTTT---A-A
*
14482774 TTTTTAAAATATTGTTAAAA
1 -TTTTAAAATATT-TT-TAA
* *
14482794 TACTTT-TAATTTTTTTAA
1 T--TTTAAAATATTTTTAA
14482812 TTTTAAAATATTTTTAA
1 TTTTAAAATATTTTTAA
14482829 AATATATTTT
Statistics
Matches: 58, Mismatches: 8, Indels: 20
0.67 0.09 0.23
Matches are distributed among these distances:
16 3 0.05
17 23 0.40
18 3 0.05
19 3 0.05
20 7 0.12
21 5 0.09
22 12 0.21
23 2 0.03
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (17 bp):
TTTTAAAATATTTTTAA
Found at i:14482805 original size:59 final size:63
Alignment explanation
Indices: 14482712--14482844 Score: 204
Period size: 59 Copynumber: 2.1 Consensus size: 63
14482702 TTTTTTTTAA
14482712 TTTTAAAATACTTTTAAAATACTTTTTTTAAATTTTTTTAATTTTAAAATATTTTT-AAA-ATAT
1 TTTTAAAATACTTTTAAAATAC--TTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATATAT
14482775 TTTTAAAATA-TTGTTAAAATAC-TTTT-AATTTTTTTAATTTTAAAATATTTTTAAAATATAT
1 TTTTAAAATACTT-TTAAAATACTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATATAT
14482836 TTTTAAAAT
1 TTTTAAAAT
14482845 TTTTGTTTTA
Statistics
Matches: 67, Mismatches: 0, Indels: 8
0.89 0.00 0.11
Matches are distributed among these distances:
59 26 0.39
60 7 0.10
61 13 0.19
62 2 0.03
63 19 0.28
ACGTcount: A:0.41, C:0.02, G:0.01, T:0.56
Consensus pattern (63 bp):
TTTTAAAATACTTTTAAAATACTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATATAT
Found at i:14482855 original size:14 final size:13
Alignment explanation
Indices: 14482819--14482844 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14482809 TAATTTTAAA
14482819 ATATTTTTAAAAT
1 ATATTTTTAAAAT
14482832 ATATTTTTAAAAT
1 ATATTTTTAAAAT
14482845 TTTTGTTTTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATATTTTTAAAAT
Found at i:14485835 original size:13 final size:14
Alignment explanation
Indices: 14485794--14485835 Score: 52
Period size: 13 Copynumber: 3.1 Consensus size: 14
14485784 AATCCAAGTC
* *
14485794 AAATAAAACAATTA
1 AAATAAAATAACTA
14485808 AAAT-AAATAACTA
1 AAATAAAATAACTA
14485821 AAATAAAATAA-TA
1 AAATAAAATAACTA
14485834 AA
1 AA
14485836 TCAAAGATTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 15 0.60
14 10 0.40
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (14 bp):
AAATAAAATAACTA
Found at i:14490488 original size:22 final size:22
Alignment explanation
Indices: 14490461--14490502 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
14490451 CGGCTCAGTT
*
14490461 TTTATTTATTGAA-TTATTTAGG
1 TTTA-TTATTCAATTTATTTAGG
14490483 TTTATTATTCAATTTATTTA
1 TTTATTATTCAATTTATTTA
14490503 ATTATTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.29, C:0.02, G:0.07, T:0.62
Consensus pattern (22 bp):
TTTATTATTCAATTTATTTAGG
Found at i:14492599 original size:15 final size:15
Alignment explanation
Indices: 14492579--14492619 Score: 64
Period size: 15 Copynumber: 2.7 Consensus size: 15
14492569 GAAGAAAGTG
*
14492579 TAAAAAGAAAGAAAT
1 TAAAAAAAAAGAAAT
14492594 TAAAAAAAAAGAAAT
1 TAAAAAAAAAGAAAT
14492609 TAAAACAAAAA
1 TAAAA-AAAAA
14492620 AAGCAAATGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
15 19 0.79
16 5 0.21
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.12
Consensus pattern (15 bp):
TAAAAAAAAAGAAAT
Found at i:14494850 original size:26 final size:27
Alignment explanation
Indices: 14494780--14494845 Score: 96
Period size: 27 Copynumber: 2.4 Consensus size: 27
14494770 CCCAAGTAGA
14494780 TATAAAATGACTGTTATGCCCCCACGT
1 TATAAAATGACTGTTATGCCCCCACGT
** * *
14494807 GGTAAAATGACTGTTATGCCCCTATGT
1 TATAAAATGACTGTTATGCCCCCACGT
14494834 TATAAAATGACT
1 TATAAAATGACT
14494846 ATATGATGTA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.32
Consensus pattern (27 bp):
TATAAAATGACTGTTATGCCCCCACGT
Found at i:14496119 original size:15 final size:15
Alignment explanation
Indices: 14496099--14496133 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
14496089 AGTGCACGAT
14496099 GTACTCGTGGACGGG
1 GTACTCGTGGACGGG
14496114 GTACTCGTGGACGGG
1 GTACTCGTGGACGGG
14496129 GTACT
1 GTACT
14496134 AGAGGTCGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.14, C:0.20, G:0.43, T:0.23
Consensus pattern (15 bp):
GTACTCGTGGACGGG
Found at i:14501864 original size:27 final size:27
Alignment explanation
Indices: 14501805--14501870 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
14501795 CCCAAACTGA
14501805 TATAAAATGACTGTTATGCCCTCATGC
1 TATAAAATGACTGTTATGCCCTCATGC
** *
14501832 GGTAAAATGACTGTTATGCCC-CTATGT
1 TATAAAATGACTGTTATGCCCTC-ATGC
14501859 TATAAAATGACT
1 TATAAAATGACT
14501871 ATATGTTCTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
26 1 0.03
27 32 0.97
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Consensus pattern (27 bp):
TATAAAATGACTGTTATGCCCTCATGC
Found at i:14506887 original size:11 final size:11
Alignment explanation
Indices: 14506871--14506895 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
14506861 AATAATATAA
14506871 ATTCATAAAAT
1 ATTCATAAAAT
14506882 ATTCATAAAAT
1 ATTCATAAAAT
14506893 ATT
1 ATT
14506896 TTGAAAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.08, G:0.00, T:0.40
Consensus pattern (11 bp):
ATTCATAAAAT
Found at i:14512067 original size:45 final size:44
Alignment explanation
Indices: 14511960--14512070 Score: 123
Period size: 45 Copynumber: 2.5 Consensus size: 44
14511950 TCTACATTTA
*
14511960 TTTTGTTGTGTACCTACAACCATAGGCAGATTCCATCTACGACAG
1 TTTTGTTGTGTACC-ACAACCATAGGCAGATTCCACCTACGACAG
** * * * *
14512005 TCATGTTATATACCCACAACCATAGGCAGATTCCACCTGCGACAT
1 TTTTGTTGTGTA-CCACAACCATAGGCAGATTCCACCTACGACAG
*
14512050 TTTTGTTGTGCATCCACAACC
1 TTTTGTTGTGTA-CCACAACC
14512071 CTTTGACAGT
Statistics
Matches: 52, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
45 50 0.96
46 2 0.04
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.30
Consensus pattern (44 bp):
TTTTGTTGTGTACCACAACCATAGGCAGATTCCACCTACGACAG
Found at i:14513157 original size:21 final size:21
Alignment explanation
Indices: 14513133--14513175 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
14513123 ATTAAAATTG
14513133 AAATAGATATAAT-ATTACAAT
1 AAAT-GATATAATGATTACAAT
* *
14513154 AAATTATATAGTGATTACAAT
1 AAATGATATAATGATTACAAT
14513175 A
1 A
14513176 TTTGAATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.53, C:0.05, G:0.07, T:0.35
Consensus pattern (21 bp):
AAATGATATAATGATTACAAT
Found at i:14518621 original size:49 final size:47
Alignment explanation
Indices: 14518460--14519207 Score: 1268
Period size: 47 Copynumber: 15.7 Consensus size: 47
14518450 TTAGGATTCT
* *
14518460 ATGTGATGGATGTGAACA-TGTATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
14518507 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14518553 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
14518602 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
14518651 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14518698 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14518745 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
14518794 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14518841 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
14518890 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
14518939 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
14518986 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14519033 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14519079 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * * *
14519126 ATGTGATGAATGTGAATGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
14519173 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
14519208 TCCCGAAGGG
Statistics
Matches: 676, Mismatches: 16, Indels: 18
0.95 0.02 0.03
Matches are distributed among these distances:
46 71 0.11
47 367 0.54
48 22 0.03
49 216 0.32
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:14518715 original size:96 final size:94
Alignment explanation
Indices: 14518460--14519207 Score: 1268
Period size: 96 Copynumber: 7.9 Consensus size: 94
14518450 TTAGGATTCT
* *
14518460 ATGTGATGGATGTGAACA-TGTATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
14518524 GTGTATATATGTGATAAGGCCTAAT-GCCG
65 GTGTATATATGTGATAAGGCCTAATGGCCG
14518553 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14518618 AGTGTATATATATGTGATAAGGCCTAATGGCCG
64 AGTG--TATATATGTGATAAGGCCTAATGGCCG
14518651 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
14518716 TGTATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATGTGATAAGGCCTAATGGCCG
14518745 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14518810 AGTGTATATATGTGATAAGGCCTAATGGCCG
64 AGTGTATATATGTGATAAGGCCTAATGGCCG
14518841 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14518906 AGTGTATATATATGTGATAAGGCCTAATGGCCG
64 AGTG--TATATATGTGATAAGGCCTAATGGCCG
14518939 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
14519004 TGTATATATGTGATAAGGCCTAATAGCCG
66 TGTATATATGTGATAAGGCCTAATGGCCG
14519033 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG-CGATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
14519097 TGTATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATGTGATAAGGCCTAATGGCCG
* * * * * * * *
14519126 ATGTGATGAATGTGAATGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
*
14519191 TGTATAAATGTGATAAG
66 TGTATATATGTGATAAG
14519208 TCCCGAAGGG
Statistics
Matches: 631, Mismatches: 13, Indels: 21
0.95 0.02 0.03
Matches are distributed among these distances:
92 1 0.00
93 104 0.16
94 150 0.24
95 46 0.07
96 237 0.38
97 22 0.03
98 71 0.11
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCG
Found at i:14519381 original size:36 final size:36
Alignment explanation
Indices: 14519326--14519402 Score: 118
Period size: 36 Copynumber: 2.1 Consensus size: 36
14519316 CCGAGCTCTA
* * *
14519326 AAGACCCGATGACTACGTGTGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGAGATTATGTCCGGGT
*
14519362 AAGACCCGATAACTTCGTGTGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGAGATTATGTCCGGGT
14519398 AAGAC
1 AAGAC
14519403 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (36 bp):
AAGACCCGATAACTACGTGTGAGATTATGTCCGGGT
Found at i:14520735 original size:39 final size:39
Alignment explanation
Indices: 14520614--14520913 Score: 435
Period size: 39 Copynumber: 7.6 Consensus size: 39
14520604 GAGAATTGAG
*
14520614 AGTGATATATCTAGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATC-CGGCTAAGTCCCGAGGAGCATTCGTGCT
14520654 AGTGATATATCCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCC-GGCTAAGTCCCGAGGAGCATTCGTGCT
14520694 AGTGATATATCCAGGCTAAGTCCCGA-GAGCATTCGTGCT
1 AGTGATATATCC-GGCTAAGTCCCGAGGAGCATTCGTGCT
*
14520733 AGTGATATATCGGGCTAAGTCCCGAGGAGCATTCGTGCT
1 AGTGATATATCCGGCTAAGTCCCGAGGAGCATTCGTGCT
14520772 AGTGATATATCCGGGCTAAGT-CCGAGGAGCATTCGTGCT
1 AGTGATATATCC-GGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
14520811 AGTGATGTATCCGGCTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGCTAAGTCCCGAGGAGCATTCGTGCT
* * *
14520850 AGTGATATATCCGTGCTAA-ACCCAAAGAGCATTCGTGCT
1 AGTGATATATCCG-GCTAAGTCCCGAGGAGCATTCGTGCT
* * *
14520889 GGTGTTATATCCGGCTAGGTCCCGA
1 AGTGATATATCCGGCTAAGTCCCGA
14520914 AGAGTAATCA
Statistics
Matches: 239, Mismatches: 15, Indels: 13
0.90 0.06 0.05
Matches are distributed among these distances:
38 25 0.10
39 138 0.58
40 76 0.32
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
AGTGATATATCCGGCTAAGTCCCGAGGAGCATTCGTGCT
Found at i:14524738 original size:49 final size:49
Alignment explanation
Indices: 14524599--14525564 Score: 1235
Period size: 49 Copynumber: 19.8 Consensus size: 49
14524589 TGAGGATTCT
* *
14524599 ATGTGATGGATGTGAACA-TG--TATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGGCCG
*
14524646 ATGCGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
14524693 ATGCGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
14524742 ATGCGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
14524791 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGTCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
14524838 ATGTGATGAATATGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
14524887 ATGCGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
14524936 ATGTGATGAATGTGAAAGTGTATATAT-T-TGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
14524983 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
14525032 ATGTGATGAACGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
14525081 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
14525130 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
14525177 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*
14525226 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * *
14525275 ATGTGATGAATGTGAAACCGATGTGATGAATGTGAAAGTGTATATATGTG-ATAA-GGCCT
1 ATGTGATGAATGTGAAA--G-TGT-AT--ATAT--ATGTG-ATA-A-G-GCCTAATGGCCG
* * * * * ******* *
14525334 ACTGGCCGATG--TGATGAATGTGAAAGTGTATATATG-TGATAAGGCCTAATAGCCG
1 A-T-G-TGATGAATG-TGAAAGTG-TA-TATATATGTGAT-AAGGCCTA--ATGGCCG
*
14525389 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGTCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
14525436 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* * * * *
14525483 ATGTGATGAATGTG-AA-TGTGTATATATGTGA-CAGGGCTGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT-AATGGCCG
* *
14525530 ACGTGATGGATGTGAAAGTGTATA-A-ATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAG
14525565 TCCCGAAGGG
Statistics
Matches: 823, Mismatches: 55, Indels: 81
0.86 0.06 0.08
Matches are distributed among these distances:
45 2 0.00
46 8 0.01
47 300 0.36
48 7 0.01
49 435 0.53
50 1 0.00
51 1 0.00
52 7 0.01
53 11 0.01
54 5 0.01
55 10 0.01
57 6 0.01
58 6 0.01
59 8 0.01
60 7 0.01
61 5 0.01
62 4 0.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:14524785 original size:145 final size:145
Alignment explanation
Indices: 14524599--14525564 Score: 1434
Period size: 145 Copynumber: 6.6 Consensus size: 145
14524589 TGAGGATTCT
* * *
14524599 ATGTGATGGATGTGAACA-TG--TATATATGAGATAAGGCCTAATGGCCGATGCGATGAATGTGA
1 ATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
14524661 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGCGATGAATGTGAAAGTGTATATATATGTGA
65 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
14524726 TAAGGCCTAATGGCCG
130 TAAGGCCTAATGGCCG
*
14524742 ATGCGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* *
14524807 AGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATGAATATGAAAGTGTATATATATGTGAT
66 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
14524872 AAGGCCTAATGGCCG
131 AAGGCCTAATGGCCG
*
14524887 ATGCGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
14524952 AGTGTATATATTTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
66 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
14525017 AAGGCCTAATGGCCG
131 AAGGCCTAATGGCCG
*
14525032 ATGTGATGAACGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
14525097 AGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTG
66 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTG
14525160 ATAAGGCCTAATGGCCG
129 ATAAGGCCTAATGGCCG
14525177 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
14525242 AGTGTATATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAACCGATGTGATGAATG
66 AGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG--A---A----A-G--TG
*
14525307 TGAAAGTGTATATATGTGATAAGGCCTACTGGCCG
117 T---A---TATATATGTGATAAGGCCTAATGGCCG
*
14525342 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
*
14525405 AGTGTATATATGTGATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTG--TATATATGTGAT
66 AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
14525468 AAGGCCTAATGGCCG
131 AAGGCCTAATGGCCG
* * * * * * *
14525483 ATGTGATGAATGTG-AA-TGTGTATATATGTGA-CAGGGCTGAGTGGCCAACGTGATGGATGTGA
1 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCT-AATGGCCGATGTGATGAATGTGA
*
14525545 AAGTGTATAAATGTGATAAG
65 AAGTGTATATATGTGATAAG
14525565 TCCCGAAGGG
Statistics
Matches: 767, Mismatches: 28, Indels: 58
0.90 0.03 0.07
Matches are distributed among these distances:
139 2 0.00
140 7 0.01
141 88 0.11
142 1 0.00
143 16 0.02
145 464 0.60
147 47 0.06
149 2 0.00
150 1 0.00
151 1 0.00
152 1 0.00
154 1 0.00
155 1 0.00
156 1 0.00
157 2 0.00
159 1 0.00
161 39 0.05
163 46 0.06
165 46 0.06
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (145 bp):
ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGAT
AAGGCCTAATGGCCG
Found at i:14525297 original size:20 final size:20
Alignment explanation
Indices: 14525272--14525311 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
14525262 GACCTAATGG
14525272 CCGATGTGATGAATGTGAAA
1 CCGATGTGATGAATGTGAAA
14525292 CCGATGTGATGAATGTGAAA
1 CCGATGTGATGAATGTGAAA
14525312 GTGTATATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.30, T:0.25
Consensus pattern (20 bp):
CCGATGTGATGAATGTGAAA
Found at i:14525312 original size:165 final size:161
Alignment explanation
Indices: 14525127--14525452 Score: 580
Period size: 165 Copynumber: 2.0 Consensus size: 161
14525117 GGCCTAATGG
14525127 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
*
14525192 AAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGT
66 AAGTG--TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATATGT
14525257 GATAAGACCTAATGGCCGATGTGATGAATGTGAAA
127 GATAAGACCTAATGGCCGATGTGATGAATGTGAAA
*
14525292 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTACTGGCCGATGTGATGAATGTGA
1 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
14525357 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
66 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
* *
14525422 AGGCCTAATGGTCGATGTGATGAATGTGAAA
131 AGACCTAATGGCCGATGTGATGAATGTGAAA
14525453 GTGTATATAT
Statistics
Matches: 157, Mismatches: 4, Indels: 4
0.95 0.02 0.02
Matches are distributed among these distances:
161 42 0.27
163 46 0.29
165 69 0.44
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.30
Consensus pattern (161 bp):
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
AGACCTAATGGCCGATGTGATGAATGTGAAA
Found at i:14525350 original size:67 final size:68
Alignment explanation
Indices: 14525223--14525358 Score: 238
Period size: 67 Copynumber: 2.0 Consensus size: 68
14525213 GGCCTAATGG
14525223 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGACCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGACCTAATGGCCGATGTGATGAATGT
14525288 GAAA
65 GAAA
* *
14525292 CCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTACTGGCCGATGTGATGAATGTG
1 CCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTG
14525356 AAA
66 AAA
14525359 GTGTATATAT
Statistics
Matches: 65, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
67 42 0.65
69 23 0.35
ACGTcount: A:0.33, C:0.10, G:0.29, T:0.29
Consensus pattern (68 bp):
CCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTG
AAA
Found at i:14525366 original size:116 final size:115
Alignment explanation
Indices: 14525174--14525405 Score: 403
Period size: 116 Copynumber: 2.0 Consensus size: 115
14525164 GGCCTAATGG
14525174 CCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
1 CCGATGTGATGAATGTGAAAGTG-ATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGT
*
14525239 GAAAGTGTATATATATGTGATAAGACCTAATGGCCGATGTGATGAATGTGAAA
65 GAAAGTG--TATATATGTGATAAGACCTAATAGCCGATGTGATGAATGTGAAA
*
14525292 CCGATGTGATGAATGTGAAAGTG-TATATATGTGATAAGGCCTACTGGCCGATGTGATGAATGTG
1 CCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
*
14525356 AAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAA
66 AAAGTGTATATATGTGATAAGACCTAATAGCCGATGTGATGAATGTGAAA
14525406 GTGTATATAT
Statistics
Matches: 111, Mismatches: 3, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
114 42 0.38
116 46 0.41
118 23 0.21
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.29
Consensus pattern (115 bp):
CCGATGTGATGAATGTGAAAGTGATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG
AAAGTGTATATATGTGATAAGACCTAATAGCCGATGTGATGAATGTGAAA
Found at i:14525463 original size:141 final size:141
Alignment explanation
Indices: 14525293--14525564 Score: 438
Period size: 141 Copynumber: 1.9 Consensus size: 141
14525283 AATGTGAAAC
*
14525293 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTACTGGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * *
14525358 AGTGTATATATGTGATAAGGCCT-AATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATA
66 AGTGTATATATGTGA-AAGGCCTGAATAGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATA
14525422 AGGCCTAATGGT
130 AGGCCTAATGGT
14525434 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
* * * * * *
14525499 TGTGTATATATGTGACAGGGCTGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAA
66 AGTGTATATATGTGAAAGGCCTGAATAGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAA
14525564 G
131 G
14525565 TCCCGAAGGG
Statistics
Matches: 120, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
140 5 0.04
141 115 0.96
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.30
Consensus pattern (141 bp):
CGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
AGTGTATATATGTGAAAGGCCTGAATAGCCAACGTGATGAATGTGAAAGTGTATAAATGTGATAA
GGCCTAATGGT
Found at i:14525739 original size:37 final size:37
Alignment explanation
Indices: 14525683--14525761 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
14525673 CCGAGCTCTA
* * *
14525683 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
14525720 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
14525757 AAGAC
1 AAGAC
14525762 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:14529904 original size:35 final size:35
Alignment explanation
Indices: 14529822--14529904 Score: 121
Period size: 35 Copynumber: 2.4 Consensus size: 35
14529812 AGCTATAGAC
* *
14529822 AAGGCCGCTAAAACTTGCAGTGTTTATTTGAAAAA
1 AAGGCCGCTAAAGCTTGCAGCGTTTATTTGAAAAA
* *
14529857 AAGGCCGCTAAAGCTTGCGGCGTTTCTTTGAAAAA
1 AAGGCCGCTAAAGCTTGCAGCGTTTATTTGAAAAA
*
14529892 AATGCCGCTAAAG
1 AAGGCCGCTAAAG
14529905 ATCTTGACTT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (35 bp):
AAGGCCGCTAAAGCTTGCAGCGTTTATTTGAAAAA
Found at i:14529995 original size:43 final size:43
Alignment explanation
Indices: 14529890--14530052 Score: 130
Period size: 43 Copynumber: 3.8 Consensus size: 43
14529880 TTCTTTGAAA
* * * * * * *
14529890 AAAATGCCGCTAAAGATCTTGACTTTTAGCGGCGCTTTTATAG
1 AAAACGCCGCTAAAGGTCGTGGCCTTTAGCGGCGCTATCATAG
* *
14529933 AAAACGCCGCTAAAGGTCGTGGTCTTTAGCGGTGCTATCATAG
1 AAAACGCCGCTAAAGGTCGTGGCCTTTAGCGGCGCTATCATAG
* * * * * ** *
14529976 AAAATGCCGCTAAATGTCGTGGCCTTTAACAGCGCTTTTTTAT
1 AAAACGCCGCTAAAGGTCGTGGCCTTTAGCGGCGCTATCATAG
* * *
14530019 AAAACTCCACTATAA-GTCATGGCCTTTAGCGGCG
1 AAAACGCCGCTA-AAGGTCGTGGCCTTTAGCGGCG
14530053 TTTTTTTATA
Statistics
Matches: 94, Mismatches: 25, Indels: 2
0.78 0.21 0.02
Matches are distributed among these distances:
43 92 0.98
44 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.29
Consensus pattern (43 bp):
AAAACGCCGCTAAAGGTCGTGGCCTTTAGCGGCGCTATCATAG
Found at i:14530023 original size:86 final size:86
Alignment explanation
Indices: 14529890--14530141 Score: 258
Period size: 86 Copynumber: 2.9 Consensus size: 86
14529880 TTCTTTGAAA
* * * * * *
14529890 AAAATGCCGCTAAA-GATCTTGACTTTTAGCGGCGCTTTTATAGAAAACGCCGCTA-AAGGTCGT
1 AAAATGCCGCTAAATG-TCGTGGCCTTTAGCAGCGCTTTTTTATAAAACGCCGCTATAA-GTCGT
14529953 GGTCTTTAGCGGTGCTATCATAG
64 GGTCTTTAGCGGTGCTATCATAG
* * * *
14529976 AAAATGCCGCTAAATGTCGTGGCCTTTAACAGCGCTTTTTTATAAAACTCCACTATAAGTCATGG
1 AAAATGCCGCTAAATGTCGTGGCCTTTAGCAGCGCTTTTTTATAAAACGCCGCTATAAGTCGTGG
* * * * ** *
14530041 CCTTTAGCGGCGTTTTTTTAT
66 TCTTTAGCGGTGCTATCATAG
* * * *
14530062 AAAACGCTGCTATAAT-TCGTGGCCTTTAGCAGCACTTTTTTTATAAAACGCCGCTATAATTCGT
1 AAAATGCCGCTA-AATGTCGTGGCCTTTAGCAGCGC-TTTTTTATAAAACGCCGCTATAAGTCGT
14530126 GGTCTTTAGCGGTGCT
64 GGTCTTTAGCGGTGCT
14530142 TTTTTTACAA
Statistics
Matches: 134, Mismatches: 28, Indels: 7
0.79 0.17 0.04
Matches are distributed among these distances:
86 91 0.68
87 43 0.32
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (86 bp):
AAAATGCCGCTAAATGTCGTGGCCTTTAGCAGCGCTTTTTTATAAAACGCCGCTATAAGTCGTGG
TCTTTAGCGGTGCTATCATAG
Found at i:14530118 original size:44 final size:44
Alignment explanation
Indices: 14529976--14530160 Score: 216
Period size: 43 Copynumber: 4.3 Consensus size: 44
14529966 GCTATCATAG
* *
14529976 AAAATGCCGCTA-AATGTCGTGGCCTTTAACAGCGC-TTTTTTAT
1 AAAACGCCGCTATAAT-TCGTGGCCTTTAGCAGCGCTTTTTTTAT
* * * * *
14530019 AAAACTCCACTATAAGTCATGGCCTTTAGCGGCG-TTTTTTTAT
1 AAAACGCCGCTATAATTCGTGGCCTTTAGCAGCGCTTTTTTTAT
* *
14530062 AAAACGCTGCTATAATTCGTGGCCTTTAGCAGCACTTTTTTTAT
1 AAAACGCCGCTATAATTCGTGGCCTTTAGCAGCGCTTTTTTTAT
* * *
14530106 AAAACGCCGCTATAATTCGTGGTCTTTAGCGGTGCTTTTTTTA-
1 AAAACGCCGCTATAATTCGTGGCCTTTAGCAGCGCTTTTTTTAT
*
14530149 CAAACGCCGCTA
1 AAAACGCCGCTA
14530161 ATTTGGGCAA
Statistics
Matches: 119, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
43 70 0.59
44 49 0.41
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.36
Consensus pattern (44 bp):
AAAACGCCGCTATAATTCGTGGCCTTTAGCAGCGCTTTTTTTAT
Found at i:14530854 original size:13 final size:14
Alignment explanation
Indices: 14530828--14530856 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
14530818 ACTAACGACA
14530828 AATTAAACCATTAT
1 AATTAAACCATTAT
14530842 AATTAAA-CATTAT
1 AATTAAACCATTAT
14530855 AA
1 AA
14530857 ATATTTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 8 0.53
14 7 0.47
ACGTcount: A:0.55, C:0.10, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACCATTAT
Found at i:14534426 original size:37 final size:37
Alignment explanation
Indices: 14534385--14534458 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
14534375 TTAAAATGTG
14534385 TTAGACCCAAAATGAAATGTATAAGAAGGAAGAATTT
1 TTAGACCCAAAATGAAATGTATAAGAAGGAAGAATTT
14534422 TTAGACCCAAAATGAAATGTATAAGAAGGAAGAATTT
1 TTAGACCCAAAATGAAATGTATAAGAAGGAAGAATTT
14534459 AAAAGTTTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.49, C:0.08, G:0.19, T:0.24
Consensus pattern (37 bp):
TTAGACCCAAAATGAAATGTATAAGAAGGAAGAATTT
Found at i:14534780 original size:27 final size:27
Alignment explanation
Indices: 14534719--14534789 Score: 99
Period size: 27 Copynumber: 2.6 Consensus size: 27
14534709 AAATACTTAA
14534719 ACATAAAAACAGTATGCATATGGGAAAT
1 ACAT-AAAACAGTATGCATATGGGAAAT
*
14534747 A-ATTAAAACCGTATGCATATGGGAAAT
1 ACA-TAAAACAGTATGCATATGGGAAAT
*
14534774 ACATAAAATAGTATGC
1 ACATAAAACAGTATGC
14534790 CAGTACCAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
27 35 0.92
28 3 0.08
ACGTcount: A:0.48, C:0.11, G:0.17, T:0.24
Consensus pattern (27 bp):
ACATAAAACAGTATGCATATGGGAAAT
Found at i:14535719 original size:21 final size:20
Alignment explanation
Indices: 14535695--14535735 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14535685 GGAGATAATG
14535695 CATTTAAAAAAAATAAATACA
1 CATTT-AAAAAAATAAATACA
*
14535716 CATTTTAAAAAATAAATACA
1 CATTTAAAAAAATAAATACA
14535736 TCAATATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.63, C:0.10, G:0.00, T:0.27
Consensus pattern (20 bp):
CATTTAAAAAAATAAATACA
Found at i:14536010 original size:7 final size:7
Alignment explanation
Indices: 14535993--14536127 Score: 51
Period size: 7 Copynumber: 18.6 Consensus size: 7
14535983 ACTCAAAGAT
*
14535993 TAAATCC
1 TAAACCC
*
14536000 TAAACCT
1 TAAACCC
14536007 TAAACCC
1 TAAACCC
14536014 TAAACCC
1 TAAACCC
14536021 TAAACCAC
1 TAAACC-C
*
14536029 AAAACACC
1 TAAAC-CC
14536037 --AACCAC
1 TAAACC-C
*
14536043 CAAACCC
1 TAAACCC
*
14536050 TAAAATCC
1 T-AAACCC
*
14536058 -AATTCCC
1 TAA-ACCC
* *
14536065 AATATACCA
1 --TAAACCC
*
14536074 TAAACCT
1 TAAACCC
*
14536081 TAAACCA
1 TAAACCC
*
14536088 TAAATCC
1 TAAACCC
14536095 TAAACCC
1 TAAACCC
*
14536102 TAAACCA
1 TAAACCC
**
14536109 TAAACAT
1 TAAACCC
14536116 TAAACCC
1 TAAACCC
14536123 GTAAA
1 -TAAA
14536128 TCACAAAACC
Statistics
Matches: 95, Mismatches: 22, Indels: 21
0.69 0.16 0.15
Matches are distributed among these distances:
5 1 0.01
6 6 0.06
7 65 0.68
8 19 0.20
9 3 0.03
10 1 0.01
ACGTcount: A:0.48, C:0.33, G:0.01, T:0.18
Consensus pattern (7 bp):
TAAACCC
Found at i:14536193 original size:7 final size:7
Alignment explanation
Indices: 14536183--14536260 Score: 54
Period size: 7 Copynumber: 11.3 Consensus size: 7
14536173 CCAAAACCCT
14536183 TAAACCA
1 TAAACCA
14536190 TAAATCC-
1 TAAA-CCA
14536197 TAAACCA
1 TAAACCA
*
14536204 TAAAACA
1 TAAACCA
** *
14536211 CCAACCT
1 TAAACCA
14536218 TAAACTC-
1 TAAAC-CA
*
14536225 TAAACCG
1 TAAACCA
*
14536232 TAAACCC
1 TAAACCA
14536239 TAAACCA
1 TAAACCA
*
14536246 TAATCC-
1 TAAACCA
14536252 TAAACCA
1 TAAACCA
14536259 TA
1 TA
14536261 TCTTTGGGAA
Statistics
Matches: 55, Mismatches: 11, Indels: 10
0.72 0.14 0.13
Matches are distributed among these distances:
6 8 0.15
7 44 0.80
8 3 0.05
ACGTcount: A:0.49, C:0.31, G:0.01, T:0.19
Consensus pattern (7 bp):
TAAACCA
Found at i:14536202 original size:14 final size:14
Alignment explanation
Indices: 14536183--14536260 Score: 72
Period size: 14 Copynumber: 5.6 Consensus size: 14
14536173 CCAAAACCCT
14536183 TAAACCATAAATCC
1 TAAACCATAAATCC
*
14536197 TAAACCATAAAACAC
1 TAAACCATAAATC-C
* *
14536212 -CAACCTTAAA-CTC
1 TAAACCATAAATC-C
* *
14536225 TAAACCGTAAACCC
1 TAAACCATAAATCC
14536239 TAAACCAT-AATCC
1 TAAACCATAAATCC
14536252 TAAACCATA
1 TAAACCATA
14536261 TCTTTGGGAA
Statistics
Matches: 52, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
13 14 0.27
14 36 0.69
15 2 0.04
ACGTcount: A:0.49, C:0.31, G:0.01, T:0.19
Consensus pattern (14 bp):
TAAACCATAAATCC
Found at i:14536221 original size:28 final size:28
Alignment explanation
Indices: 14536175--14536260 Score: 81
Period size: 28 Copynumber: 3.0 Consensus size: 28
14536165 CAATATACCC
14536175 AAAACCCTTAAACCATAAATCCTAAACCAT
1 AAAACCC--AAACCATAAATCCTAAACCAT
* *
14536205 AAAACACC-AACCTTAAA-CTCTAAACCGT
1 AAAAC-CCAAACCATAAATC-CTAAACCAT
14536233 -AAACCCTAAACCAT-AATCCTAAACCAT
1 AAAACCC-AAACCATAAATCCTAAACCAT
14536260 A
1 A
14536261 TCTTTGGGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
26 2 0.04
27 15 0.33
28 22 0.48
30 5 0.11
31 2 0.04
ACGTcount: A:0.49, C:0.31, G:0.01, T:0.19
Consensus pattern (28 bp):
AAAACCCAAACCATAAATCCTAAACCAT
Found at i:14536221 original size:102 final size:102
Alignment explanation
Indices: 14536008--14536230 Score: 292
Period size: 102 Copynumber: 2.2 Consensus size: 102
14535998 CCTAAACCTT
* *
14536008 AAACCCTAAACCCTAAACCACAAAACACCAACCACCAAACCCTAAAATCCAATTCCCAATATACC
1 AAACCTTAAACCCTAAACCACAAAACACCAACCACCAAACCCTAAAATCCAATCCCCAATATACC
* * *
14536073 ATAAACCTTAAACCATAAATCCTAAACCCTAAACCAT
66 ATAAACCTTAAACCATAAATCCTAAACCATAAAACAC
* * *
14536110 AAACATTAAACCCGTAAATCAC-AAA-ACCAACCACCAAAACCC-AAAATTCAATCCCCAATATA
1 AAACCTTAAACCC-TAAACCACAAAACACCAACCACC-AAACCCTAAAATCCAATCCCCAATATA
14536172 CCCA-AAACCCTTAAACCATAAATCCTAAACCATAAAACAC
64 -CCATAAA-CCTTAAACCATAAATCCTAAACCATAAAACAC
* *
14536212 CAACCTTAAACTCTAAACC
1 AAACCTTAAACCCTAAACC
14536231 GTAAACCCTA
Statistics
Matches: 105, Mismatches: 12, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
101 36 0.34
102 62 0.59
103 7 0.07
ACGTcount: A:0.49, C:0.35, G:0.00, T:0.16
Consensus pattern (102 bp):
AAACCTTAAACCCTAAACCACAAAACACCAACCACCAAACCCTAAAATCCAATCCCCAATATACC
ATAAACCTTAAACCATAAATCCTAAACCATAAAACAC
Found at i:14536841 original size:114 final size:114
Alignment explanation
Indices: 14536661--14536927 Score: 381
Period size: 114 Copynumber: 2.3 Consensus size: 114
14536651 AGAAAGCGCG
* * * * *
14536661 GCTAATGCCACTAAAGCTTAAGCTAGAATGATGCGTTTTGATTAACATTTTTACGGTATTTTTAG
1 GCTAATGCCACTAAAGCTCAAGATAGAACGATGCATTTTGATTAACATTTTTACGGCATTTTTAG
* * *
14536726 AAAAGCACTGCTAATTCTCGACATATAGCGGCATTTTTGAATAAATGTC
66 AAAAGCACCGCTAATTCTCGACATATAGCGGCATTTTTGAATAAACGCC
* **
14536775 GTTAATGCCACTAAAGCTCAAGATAGAACGATGCATTTTGATTAACATTTTTGTGGCATTTTTAG
1 GCTAATGCCACTAAAGCTCAAGATAGAACGATGCATTTTGATTAACATTTTTACGGCATTTTTAG
* * * * * *
14536840 AAGAGCTCCGCTAATTCTCGACCTCTAGCGGCATTTTTGCATAAGCGCC
66 AAAAGCACCGCTAATTCTCGACATATAGCGGCATTTTTGAATAAACGCC
14536889 GCTAATGCCACTAAAGCTCAAGATAGAACGATGCATTTT
1 GCTAATGCCACTAAAGCTCAAGATAGAACGATGCATTTT
14536928 TAGAAGAGCA
Statistics
Matches: 135, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
114 135 1.00
ACGTcount: A:0.30, C:0.19, G:0.18, T:0.33
Consensus pattern (114 bp):
GCTAATGCCACTAAAGCTCAAGATAGAACGATGCATTTTGATTAACATTTTTACGGCATTTTTAG
AAAAGCACCGCTAATTCTCGACATATAGCGGCATTTTTGAATAAACGCC
Found at i:14537269 original size:40 final size:40
Alignment explanation
Indices: 14536930--14537257 Score: 539
Period size: 40 Copynumber: 8.2 Consensus size: 40
14536920 TGCATTTTTA
14536930 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
1 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
14536970 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
1 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
*
14537010 GAAGAGCATTCATGCTAGTGATATATCCGGGCTAAGTCCC
1 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
*
14537050 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCTC
1 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
* *
14537090 GAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTTCC
1 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
* * *
14537130 GAAGAGCATTCGTGCTAGTGATATATCCAGGTTAAATCCC
1 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
* * *
14537170 GAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCC
1 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
* * *
14537210 GAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCC
1 GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
14537250 GAAGAGCA
1 GAAGAGCA
14537258 ATCATGCTGG
Statistics
Matches: 265, Mismatches: 23, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 265 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
GAAGAGCATTCGTGCTAGTGATATATCCGGGCTAAGTCCC
Found at i:14540416 original size:47 final size:47
Alignment explanation
Indices: 14540348--14541117 Score: 1261
Period size: 47 Copynumber: 16.3 Consensus size: 47
14540338 TGACACTGTA
*
14540348 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATATGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
14540395 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
*
14540444 ATATATGTGATAAGGCCTAACGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
14540493 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
14540540 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAGGTGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
14540587 ATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * *
14540634 ATATATGTGATAAGGCCTAATAGCAGATGTGATGAATGCGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
14540681 ATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
14540728 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * *
14540775 ATATATGTTATAAGGCCTAATGGCCGATATGATGAATGTGAAGGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * *
14540822 ATATATGTGGTAAGGCCTAATGGCCGATATGACGAATGTGAAGGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* *
14540869 ATATATGTGGTAAGGCCTAATGGCCGATGTGATGAATGCGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
14540916 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
14540963 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
14541010 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
* * * * * * *
14541057 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
*
14541104 ATAAATGTGATAAG
1 ATATATGTGATAAG
14541118 TCCCGAAGGG
Statistics
Matches: 684, Mismatches: 37, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 590 0.86
49 94 0.14
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGT
Found at i:14541305 original size:37 final size:37
Alignment explanation
Indices: 14541236--14541314 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
14541226 CTGAGCTCTA
* * *
14541236 AAGACCCGATGACTACGCGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGCGTGGAGATTATGTCCGGGT
* *
14541273 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGCGTGGAGATTATGTCCGGGT
14541310 AAGAC
1 AAGAC
14541315 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.32, T:0.24
Consensus pattern (37 bp):
AAGACCCGATAACTACGCGTGGAGATTATGTCCGGGT
Found at i:14550717 original size:11 final size:11
Alignment explanation
Indices: 14550701--14550726 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14550691 AAGGGAATTT
14550701 ATTTCTTAGTA
1 ATTTCTTAGTA
14550712 ATTTCTTAGTA
1 ATTTCTTAGTA
14550723 ATTT
1 ATTT
14550727 ATTTCTTGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.08, G:0.08, T:0.58
Consensus pattern (11 bp):
ATTTCTTAGTA
Found at i:14552463 original size:24 final size:24
Alignment explanation
Indices: 14552431--14552479 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
14552421 AATGAGCAAA
*
14552431 AGCTCTAAACTTAATTCCAAGTGG
1 AGCTCTAAACTTAAGTCCAAGTGG
*
14552455 AGCTCTAAACTTACGTCCAAGTGG
1 AGCTCTAAACTTAAGTCCAAGTGG
14552479 A
1 A
14552480 TCCTAAATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.33, C:0.22, G:0.18, T:0.27
Consensus pattern (24 bp):
AGCTCTAAACTTAAGTCCAAGTGG
Found at i:14554203 original size:40 final size:40
Alignment explanation
Indices: 14554148--14554235 Score: 167
Period size: 40 Copynumber: 2.2 Consensus size: 40
14554138 AAAATTATAC
*
14554148 ATATCACTAGCACGAATGCTCCTCGGGATTTAGCCCGGAT
1 ATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGAT
14554188 ATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGAT
1 ATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGAT
14554228 ATATCACT
1 ATATCACT
14554236 CTCAATTCTC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 47 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
ATATCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGAT
Found at i:14555503 original size:37 final size:37
Alignment explanation
Indices: 14555445--14555520 Score: 107
Period size: 37 Copynumber: 2.1 Consensus size: 37
14555435 TTACGAAGTT
* * *
14555445 TTACCCAGACATAATCTCCACACGAAGTTATCGGGTC
1 TTACCCAGACAAAATCCCCACACGAAGTCATCGGGTC
* *
14555482 TTACCCGGACAAAATCCCCACACGTAGTCATCGGGTC
1 TTACCCAGACAAAATCCCCACACGAAGTCATCGGGTC
14555519 TT
1 TT
14555521 TAGAGCTCGG
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.28, C:0.32, G:0.17, T:0.24
Consensus pattern (37 bp):
TTACCCAGACAAAATCCCCACACGAAGTCATCGGGTC
Found at i:14555717 original size:47 final size:47
Alignment explanation
Indices: 14555639--14556013 Score: 624
Period size: 47 Copynumber: 7.9 Consensus size: 47
14555629 CCCTTCGGGA
* * * * * *
14555639 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
14555686 CCTGTCACATATAGACACTTTCACATTCATCACATCGGCCATAAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14555733 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14555780 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14555827 CTTATCACATATATATACACTTTCACATTCATCAAATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14555876 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14555923 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14555970 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
14556014 CGCCATACTA
Statistics
Matches: 309, Mismatches: 17, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 263 0.85
49 46 0.15
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14555973 original size:190 final size:188
Alignment explanation
Indices: 14555639--14556013 Score: 633
Period size: 190 Copynumber: 2.0 Consensus size: 188
14555629 CCCTTCGGGA
** * * *
14555639 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATAGACAC
1 CTTATCACATTTATACACTTTCACATCCATCAAATCGGCCACTAGGCCCTATCACATATAGACAC
14555704 TTTCACATTCATCACATCGGCCATAAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATAAGGCCTTATCACATATATACACTTTCACATTCATCACATC
14555769 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
131 GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * * *
14555827 CTTATCACATATATATACACTTTCACATTCATCAAATCGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACAT-T-TATACACTTTCACATCCATCAAATCGGCCACTAGGCCCTATCACATATAGAC
*
14555892 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATAAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
14555957 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGTCATTA
129 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
14556014 CGCCATACTA
Statistics
Matches: 174, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
188 10 0.06
189 1 0.01
190 163 0.94
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (188 bp):
CTTATCACATTTATACACTTTCACATCCATCAAATCGGCCACTAGGCCCTATCACATATAGACAC
TTTCACATTCATCACATCGGCCATAAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14559438 original size:40 final size:40
Alignment explanation
Indices: 14559412--14559636 Score: 328
Period size: 40 Copynumber: 5.7 Consensus size: 40
14559402 TGATTACTCT
* * * *
14559412 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* ** * *
14559452 TCGAGG-TTTAGCATGGATATATTACTAGCACGAATGCTCT
1 TCG-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* *
14559492 TCGGAACTTAGCCCGGATACATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
14559532 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
14559572 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
14559612 TCGGGACTTAGCCCGG-TATATCACT
1 TCGGGACTTAGCCCGGATATATCACT
14559637 CTCAATTCTC
Statistics
Matches: 167, Mismatches: 16, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
39 10 0.06
40 155 0.93
41 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
Found at i:14560891 original size:37 final size:37
Alignment explanation
Indices: 14560841--14560919 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
14560831 TTATTACGAA
* * *
14560841 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
14560878 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
14560915 GTCTT
1 GTCTT
14560920 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Done.