Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 50 of 170
Found at i:14561116 original size:47 final size:47
Alignment explanation
Indices: 14561038--14561411 Score: 642
Period size: 47 Copynumber: 7.9 Consensus size: 47
14561028 CCCTTCGGGA
* * * * * *
14561038 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14561085 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14561132 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14561179 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14561226 CTTATCACATATATATACACTTTCACATTCATCA-ATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14561274 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14561321 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14561368 CTTATCACATATATACACTTTCACATTCATCACATCGGTCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
14561412 CGCCATACTA
Statistics
Matches: 313, Mismatches: 11, Indels: 6
0.95 0.03 0.02
Matches are distributed among these distances:
46 24 0.08
47 243 0.78
48 22 0.07
49 24 0.08
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14565830 original size:32 final size:32
Alignment explanation
Indices: 14565792--14565853 Score: 79
Period size: 32 Copynumber: 1.9 Consensus size: 32
14565782 CCCGTTTTTT
* **
14565792 AAATAAATACCAAAAATTTATTTTAAAAATTA
1 AAATAAAAACCAAAAAAATATTTTAAAAATTA
**
14565824 AAATAAAAATTAAAAAAATATTTTAAAAAT
1 AAATAAAAACCAAAAAAATATTTTAAAAAT
14565854 ATTTTAAAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.65, C:0.03, G:0.00, T:0.32
Consensus pattern (32 bp):
AAATAAAAACCAAAAAAATATTTTAAAAATTA
Found at i:14565863 original size:10 final size:11
Alignment explanation
Indices: 14565837--14565862 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
14565827 TAAAAATTAA
14565837 AAAAATATTTT
1 AAAAATATTTT
14565848 AAAAATATTTT
1 AAAAATATTTT
14565859 AAAA
1 AAAA
14565863 TTAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:14565881 original size:42 final size:41
Alignment explanation
Indices: 14565810--14565966 Score: 174
Period size: 41 Copynumber: 3.6 Consensus size: 41
14565800 ACCAAAAATT
14565810 TATTTTAAAAATTAAAATAAA-AATTAAAAAAA-TATTTTAAAAA
1 TATTTT-AAAATTAAAA-AAATAA--AAAAAAAGTATTTTAAAAA
14565853 TATTTTAAAATTAAAAAAATTAAAAAAAAAGTATTTTAAAAAAA
1 TATTTTAAAATTAAAAAAA-TAAAAAAAAAGTATTTT--AAAAA
* * *
14565897 TTTTAAATTTAAAATTAAAAAAATTAAAAAAAAGTATTTTAAAAG
1 ---T-ATTTTAAAATTAAAAAAATAAAAAAAAAGTATTTTAAAAA
14565942 TATTTTAAAATTAAAAAAATAAAAA
1 TATTTTAAAATTAAAAAAATAAAAA
14565967 TATTTATTAT
Statistics
Matches: 100, Mismatches: 5, Indels: 20
0.80 0.04 0.16
Matches are distributed among these distances:
41 32 0.32
42 17 0.17
43 8 0.08
44 5 0.05
45 4 0.04
47 17 0.17
48 17 0.17
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (41 bp):
TATTTTAAAATTAAAAAAATAAAAAAAAAGTATTTTAAAAA
Found at i:14565935 original size:47 final size:48
Alignment explanation
Indices: 14565856--14565957 Score: 170
Period size: 47 Copynumber: 2.1 Consensus size: 48
14565846 TTAAAAATAT
14565856 TTTAAAATTAAAAAAATTAAAAAAAAAGTATTTTAAAAAAATTTTAAA
1 TTTAAAATTAAAAAAATTAAAAAAAAAGTATTTTAAAAAAATTTTAAA
**
14565904 TTTAAAATTAAAAAAATT-AAAAAAAAGTATTTTAAAAGTATTTTAAA
1 TTTAAAATTAAAAAAATTAAAAAAAAAGTATTTTAAAAAAATTTTAAA
*
14565951 ATTAAAA
1 TTTAAAA
14565958 AAATAAAAAT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
47 33 0.65
48 18 0.35
ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34
Consensus pattern (48 bp):
TTTAAAATTAAAAAAATTAAAAAAAAAGTATTTTAAAAAAATTTTAAA
Found at i:14567599 original size:114 final size:114
Alignment explanation
Indices: 14567481--14567892 Score: 382
Period size: 114 Copynumber: 3.6 Consensus size: 114
14567471 GCACTTACTC
* * * *
14567481 GAAAACGCCACTATATATCAGCTTGTAGTGGCGCTTCTACTGAAGCGCCGCAAAAATTTTGACCA
1 GAAAACGCCGCTATATATCAGCTTTTAGTGGCGCTTCTACTGAAGCGCCACAAAAATTTTAACCA
* *
14567546 AAACGCATCGTTCCGGCTTGACCTATAAAGGCGTTAGCAACGCTTACCT
66 AAACGCATCGTTCCGGCTTGACCTATAGAGGCGTTAGCAGCGCTTACCT
* ** ** * ** ** * *
14567595 GAAAACGCCGCTATA-ACCCTCAATTAGCGGCGCTTAACTA-AAAAATGCCAAAAAAATTTAAAC
1 GAAAACGCCGCTATATATCAGCTTTTAGTGGCGCTT--CTACTGAAGCGCCACAAAAATTTTAAC
* * * * * * * * ** *
14567658 CGAAACGAAACGTTTCGTCTTGAGCTATAGCGTCGTTAGTGGCGCTTACCC
64 CAAAACGCATCGTTCCGGCTTGACCTATAGAGGCGTTAGCAGCGCTTACCT
** * *
14567709 GAAAAATCCGCTATATATCAGCTTTTAGTGGCACTTCTACTGAAGCGCCACAAAAATTTTGACCA
1 GAAAACGCCGCTATATATCAGCTTTTAGTGGCGCTTCTACTGAAGCGCCACAAAAATTTTAACCA
* **
14567774 AAACGCATCGTTCCGGCTTGACCTATAGAGGCATTAGCAGCGCTTATTT
66 AAACGCATCGTTCCGGCTTGACCTATAGAGGCGTTAGCAGCGCTTACCT
* * * ** *
14567823 GAAAACGCCGCTATAGAACAACTTTTAGTGGCGCTT-TAGGGAAAGCGCCGC-AAAATTGTTAAC
1 GAAAACGCCGCTATATATCAGCTTTTAGTGGCGCTTCTACTG-AAGCGCCACAAAAATT-TTAAC
14567886 CAAAACG
64 CAAAACG
14567893 GCGCAGTTTT
Statistics
Matches: 223, Mismatches: 69, Indels: 12
0.73 0.23 0.04
Matches are distributed among these distances:
113 25 0.11
114 182 0.82
115 16 0.07
ACGTcount: A:0.32, C:0.24, G:0.20, T:0.24
Consensus pattern (114 bp):
GAAAACGCCGCTATATATCAGCTTTTAGTGGCGCTTCTACTGAAGCGCCACAAAAATTTTAACCA
AAACGCATCGTTCCGGCTTGACCTATAGAGGCGTTAGCAGCGCTTACCT
Found at i:14567765 original size:228 final size:228
Alignment explanation
Indices: 14567367--14567837 Score: 708
Period size: 228 Copynumber: 2.1 Consensus size: 228
14567357 GGCGGTTGTA
* * **
14567367 GAAAACGCCGCTATATCCCGCAATTAGCAGCGCTTAACTAAAAAATGCCAGAAACTTTTAAACCG
1 GAAAACGCCGCTATAACCCGCAATTAGCAGCGCTTAACTAAAAAATGCCAAAAAAATTTAAACCG
* * * *
14567432 AAATGCAACATTTCGTCTTGAGCTATAGCGCCATCAGCGGCACTTACTCGAAAACGCCACTATAT
66 AAACGAAACATTTCGTCTTGAGCTATAGCGCCATCAGCGGCACTTACCCGAAAAAGCCACTATAT
* *
14567497 ATCAGCTTGTAGTGGCGCTTCTACTGAAGCGCCGCAAAAATTTTGACCAAAACGCATCGTTCCGG
131 ATCAGCTTGTAGTGGCACTTCTACTGAAGCGCCACAAAAATTTTGACCAAAACGCATCGTTCCGG
*
14567562 CTTGACCTATAAAGGCGTTAGCAACGCTTACCT
196 CTTGACCTATAAAGGCATTAGCAACGCTTACCT
* *
14567595 GAAAACGCCGCTATAACCCTCAATTAGCGGCGCTTAACTAAAAAATGCCAAAAAAATTTAAACCG
1 GAAAACGCCGCTATAACCCGCAATTAGCAGCGCTTAACTAAAAAATGCCAAAAAAATTTAAACCG
* * * * * * * *
14567660 AAACGAAACGTTTCGTCTTGAGCTATAGCGTCGTTAGTGGCGCTTACCCGAAAAATCCGCTATAT
66 AAACGAAACATTTCGTCTTGAGCTATAGCGCCATCAGCGGCACTTACCCGAAAAAGCCACTATAT
*
14567725 ATCAGCTTTTAGTGGCACTTCTACTGAAGCGCCACAAAAATTTTGACCAAAACGCATCGTTCCGG
131 ATCAGCTTGTAGTGGCACTTCTACTGAAGCGCCACAAAAATTTTGACCAAAACGCATCGTTCCGG
* * **
14567790 CTTGACCTATAGAGGCATTAGCAGCGCTTATTT
196 CTTGACCTATAAAGGCATTAGCAACGCTTACCT
14567823 GAAAACGCCGCTATA
1 GAAAACGCCGCTATA
14567838 GAACAACTTT
Statistics
Matches: 217, Mismatches: 26, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
228 217 1.00
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (228 bp):
GAAAACGCCGCTATAACCCGCAATTAGCAGCGCTTAACTAAAAAATGCCAAAAAAATTTAAACCG
AAACGAAACATTTCGTCTTGAGCTATAGCGCCATCAGCGGCACTTACCCGAAAAAGCCACTATAT
ATCAGCTTGTAGTGGCACTTCTACTGAAGCGCCACAAAAATTTTGACCAAAACGCATCGTTCCGG
CTTGACCTATAAAGGCATTAGCAACGCTTACCT
Found at i:14568338 original size:22 final size:21
Alignment explanation
Indices: 14568313--14568356 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
14568303 TGGTGGTTGT
*
14568313 TGTTTGTGGTTTACGGGTTTAA
1 TGTTTATGGTTTA-GGGTTTAA
14568335 TGTTTATGGTTTAGGGTTTAA
1 TGTTTATGGTTTAGGGTTTAA
14568356 T
1 T
14568357 ATTTTCGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.16, C:0.02, G:0.30, T:0.52
Consensus pattern (21 bp):
TGTTTATGGTTTAGGGTTTAA
Found at i:14568366 original size:21 final size:22
Alignment explanation
Indices: 14568319--14568360 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
14568309 TTGTTGTTTG
*
14568319 TGGTTTACGGGTTTAATGTTTA
1 TGGTTTACGGGTTTAATATTTA
14568341 TGGTTTA-GGGTTTAATATTT
1 TGGTTTACGGGTTTAATATTT
14568361 TCGGTTAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.19, C:0.02, G:0.26, T:0.52
Consensus pattern (22 bp):
TGGTTTACGGGTTTAATATTTA
Found at i:14568465 original size:21 final size:21
Alignment explanation
Indices: 14568435--14568496 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
14568425 TTAATTGACG
14568435 AGTTTAGGGTTTAAGGTTTAT
1 AGTTTAGGGTTTAAGGTTTAT
* *
14568456 -GATTTGGGGTTTAGGGTTTAT
1 AG-TTTAGGGTTTAAGGTTTAT
*
14568477 AGTTTAGGGTTTAAGATTTA
1 AGTTTAGGGTTTAAGGTTTA
14568497 CGGTTAAGGC
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
20 1 0.03
21 32 0.94
22 1 0.03
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.47
Consensus pattern (21 bp):
AGTTTAGGGTTTAAGGTTTAT
Found at i:14568496 original size:14 final size:14
Alignment explanation
Indices: 14568436--14568505 Score: 63
Period size: 14 Copynumber: 5.1 Consensus size: 14
14568426 TAATTGACGA
14568436 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
* * **
14568450 GTTTATGATTTGGG
1 GTTTAGGGTTTAAG
14568464 GTTTAGGGTTTATA-
1 GTTTAGGGTTTA-AG
14568478 GTTTAGGGTTTAAG
1 GTTTAGGGTTTAAG
* *
14568492 ATTTACGG-TTAAG
1 GTTTAGGGTTTAAG
14568505 G
1 G
14568506 CTTATAGTAT
Statistics
Matches: 43, Mismatches: 11, Indels: 5
0.73 0.19 0.08
Matches are distributed among these distances:
13 6 0.14
14 37 0.86
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.44
Consensus pattern (14 bp):
GTTTAGGGTTTAAG
Found at i:14568902 original size:21 final size:20
Alignment explanation
Indices: 14568862--14568899 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14568852 AATATATTGA
*
14568862 TGTATTTATTTTTTAAAATG
1 TGTAATTATTTTTTAAAATG
14568882 TGTAATTATTTTTTAAAA
1 TGTAATTATTTTTTAAAA
14568900 ATGCATTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
TGTAATTATTTTTTAAAATG
Found at i:14569463 original size:19 final size:19
Alignment explanation
Indices: 14569424--14569465 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
14569414 CTGTCATCTC
*
14569424 CCCCAAATCCCTAAAATTT
1 CCCCAAATCCCTAAAAGTT
* *
14569443 CCCCTAATCCCTAACAGTT
1 CCCCAAATCCCTAAAAGTT
14569462 CCCC
1 CCCC
14569466 CAACCCGACG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.29, C:0.45, G:0.02, T:0.24
Consensus pattern (19 bp):
CCCCAAATCCCTAAAAGTT
Found at i:14569831 original size:6 final size:6
Alignment explanation
Indices: 14569820--14569852 Score: 66
Period size: 6 Copynumber: 5.5 Consensus size: 6
14569810 GAAATTTATA
14569820 TATATG TATATG TATATG TATATG TATATG TAT
1 TATATG TATATG TATATG TATATG TATATG TAT
14569853 TAAAACTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (6 bp):
TATATG
Found at i:14572032 original size:30 final size:30
Alignment explanation
Indices: 14571998--14572153 Score: 111
Period size: 30 Copynumber: 5.1 Consensus size: 30
14571988 ATTAAGATAA
14571998 AATTTCTAATTACATAACTTATATAATATT
1 AATTTCTAATTACATAACTTATATAATATT
* * * * *
14572028 AATTTCTAATTTC-TAAGTACACATCAATTTCT
1 AATTTCTAATTACATAACT-TATAT-AATAT-T
* * * * *
14572060 AATTT-TATATAACTTATAC-AATATTAAGATAA
1 AATTTCTA-ATTACATA-ACTTATA-TAATAT-T
*
14572092 AATTTCGAATTACATAACTTATATAATATT
1 AATTTCTAATTACATAACTTATATAATATT
* *
14572122 AATTTCTCATTGCATAACTTATATAATATT
1 AATTTCTAATTACATAACTTATATAATATT
14572152 AA
1 AA
14572154 GATAAAATTT
Statistics
Matches: 94, Mismatches: 23, Indels: 18
0.70 0.17 0.13
Matches are distributed among these distances:
29 4 0.04
30 44 0.47
31 13 0.14
32 28 0.30
33 4 0.04
34 1 0.01
ACGTcount: A:0.42, C:0.12, G:0.03, T:0.44
Consensus pattern (30 bp):
AATTTCTAATTACATAACTTATATAATATT
Found at i:14572039 original size:37 final size:37
Alignment explanation
Indices: 14571974--14572048 Score: 105
Period size: 37 Copynumber: 2.0 Consensus size: 37
14571964 TAAAATTAAG
*
14571974 ATAACTTATATAATATTAAGATAAAATTTCTAATTAC
1 ATAACTTATATAATATTAAGATAAAATTTCTAAGTAC
** **
14572011 ATAACTTATATAATATTAATTTCTAATTTCTAAGTAC
1 ATAACTTATATAATATTAAGATAAAATTTCTAAGTAC
14572048 A
1 A
14572049 CATCAATTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.43
Consensus pattern (37 bp):
ATAACTTATATAATATTAAGATAAAATTTCTAAGTAC
Found at i:14572110 original size:37 final size:36
Alignment explanation
Indices: 14572068--14572172 Score: 116
Period size: 30 Copynumber: 3.0 Consensus size: 36
14572058 CTAATTTTAT
*
14572068 ATAACTTATACAATATTAAGATAAAATTTCGAATTAC
1 ATAACTTATATAATATTAAGATAAAATTTC-AATTAC
*
14572105 ATAACTTATATAATATT-A-AT----TTCTC-ATTGC
1 ATAACTTATATAATATTAAGATAAAATT-TCAATTAC
14572135 ATAACTTATATAATATTAAGATAAAATTTCTAATTAC
1 ATAACTTATATAATATTAAGATAAAATTTC-AATTAC
14572172 A
1 A
14572173 CATCAATTTC
Statistics
Matches: 56, Mismatches: 3, Indels: 18
0.73 0.04 0.23
Matches are distributed among these distances:
30 21 0.38
31 3 0.05
32 4 0.07
35 4 0.07
36 3 0.05
37 21 0.38
ACGTcount: A:0.46, C:0.10, G:0.04, T:0.40
Consensus pattern (36 bp):
ATAACTTATATAATATTAAGATAAAATTTCAATTAC
Found at i:14572201 original size:124 final size:124
Alignment explanation
Indices: 14571998--14572241 Score: 382
Period size: 124 Copynumber: 2.0 Consensus size: 124
14571988 ATTAAGATAA
** **
14571998 AATTTCTAATTACATAACTTATATAATATTAATTTCTAATTTCTAAGTACACATCAATTTCTAAT
1 AATTTCTAATTACATAACTTATATAATATTAAGATAAAATTTCTAAGTACACATCAATTTCTAAT
* *
14572063 TTTATATAACTTATACAATATTAAGATAAAATTTCG-AATTACATAACTTATATAATATT
66 TTTAGATAACTTATACAATATTAAGATAAAATTTCGTAA-TACATAACTTAAATAATATT
* * *
14572122 AATTTCTCATTGCATAACTTATATAATATTAAGATAAAATTTCTAATTACACATCAATTTCTAAT
1 AATTTCTAATTACATAACTTATATAATATTAAGATAAAATTTCTAAGTACACATCAATTTCTAAT
*
14572187 TTTAGATAACTTATATAATATTAAGATAAAATTTCGTAATACATAACTTAAATAA
66 TTTAGATAACTTATACAATATTAAGATAAAATTTCGTAATACATAACTTAAATAA
14572242 CTTACATAAT
Statistics
Matches: 109, Mismatches: 10, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
124 107 0.98
125 2 0.02
ACGTcount: A:0.44, C:0.11, G:0.03, T:0.42
Consensus pattern (124 bp):
AATTTCTAATTACATAACTTATATAATATTAAGATAAAATTTCTAAGTACACATCAATTTCTAAT
TTTAGATAACTTATACAATATTAAGATAAAATTTCGTAATACATAACTTAAATAATATT
Found at i:14572261 original size:16 final size:16
Alignment explanation
Indices: 14572238--14572303 Score: 60
Period size: 16 Copynumber: 3.8 Consensus size: 16
14572228 CATAACTTAA
14572238 ATAACTTACATAATAC
1 ATAACTTACATAATAC
* *
14572254 ACAACTTATTACATAACTTAA
1 ATAAC---TTACATAA--TAC
14572275 ATAACTTACATAATAC
1 ATAACTTACATAATAC
*
14572291 ATAACTTTCATAA
1 ATAACTTACATAA
14572304 CTTACATTAT
Statistics
Matches: 40, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
16 18 0.45
18 8 0.20
19 8 0.20
21 6 0.15
ACGTcount: A:0.48, C:0.18, G:0.00, T:0.33
Consensus pattern (16 bp):
ATAACTTACATAATAC
Found at i:14572267 original size:37 final size:37
Alignment explanation
Indices: 14572226--14572297 Score: 135
Period size: 37 Copynumber: 1.9 Consensus size: 37
14572216 AATTTCGTAA
14572226 TACATAACTTAAATAACTTACATAATACACAACTTAT
1 TACATAACTTAAATAACTTACATAATACACAACTTAT
*
14572263 TACATAACTTAAATAACTTACATAATACATAACTT
1 TACATAACTTAAATAACTTACATAATACACAACTT
14572298 TCATAACTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (37 bp):
TACATAACTTAAATAACTTACATAATACACAACTTAT
Found at i:14572291 original size:25 final size:25
Alignment explanation
Indices: 14572263--14572310 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
14572253 CACAACTTAT
14572263 TACATAACTTAAATAACTTACATAA
1 TACATAACTTAAATAACTTACATAA
**
14572288 TACATAACTTTCATAACTTACAT
1 TACATAACTTAAATAACTTACAT
14572311 TATTCACAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (25 bp):
TACATAACTTAAATAACTTACATAA
Found at i:14572321 original size:25 final size:25
Alignment explanation
Indices: 14572275--14572322 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14572265 CATAACTTAA
*
14572275 ATAACTTACATAATACATAACTTTC
1 ATAACTTACATAATACACAACTTTC
* *
14572300 ATAACTTACATTATTCACAACTT
1 ATAACTTACATAATACACAACTT
14572323 GGCCGATTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.38
Consensus pattern (25 bp):
ATAACTTACATAATACACAACTTTC
Found at i:14572356 original size:9 final size:9
Alignment explanation
Indices: 14572342--14572423 Score: 55
Period size: 9 Copynumber: 9.1 Consensus size: 9
14572332 ATTAATATTA
14572342 TACATAACT
1 TACATAACT
14572351 TACATATATAACT
1 TAC--ATA--ACT
*
14572364 CACATAACT
1 TACATAACT
*
14572373 TACATAGCT
1 TACATAACT
*
14572382 TACAT-TC-
1 TACATAACT
*
14572389 TACACAACT
1 TACATAACT
*
14572398 TACATAACA
1 TACATAACT
14572407 TACATAA--
1 TACATAACT
14572414 TACATAACT
1 TACATAACT
14572423 T
1 T
14572424 GGTCTTATTA
Statistics
Matches: 57, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
7 11 0.19
8 2 0.04
9 33 0.58
11 6 0.11
13 5 0.09
ACGTcount: A:0.44, C:0.23, G:0.01, T:0.32
Consensus pattern (9 bp):
TACATAACT
Found at i:14572417 original size:25 final size:25
Alignment explanation
Indices: 14572369--14572423 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
14572359 TAACTCACAT
* * **
14572369 AACTTACATAGCTTACATTCTACAC
1 AACTTACATAACATACATAATACAC
*
14572394 AACTTACATAACATACATAATACAT
1 AACTTACATAACATACATAATACAC
14572419 AACTT
1 AACTT
14572424 GGTCTTATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.24, G:0.02, T:0.31
Consensus pattern (25 bp):
AACTTACATAACATACATAATACAC
Found at i:14574106 original size:21 final size:21
Alignment explanation
Indices: 14574077--14574122 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
14574067 CAACAATTTA
*
14574077 AAGCTGAGGCTGAAGCGAGGG
1 AAGCGGAGGCTGAAGCGAGGG
14574098 AAGCGGAGGCTGAAGCGAGGG
1 AAGCGGAGGCTGAAGCGAGGG
14574119 AAGC
1 AAGC
14574123 AGAGCAGAGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.48, T:0.07
Consensus pattern (21 bp):
AAGCGGAGGCTGAAGCGAGGG
Found at i:14574626 original size:43 final size:42
Alignment explanation
Indices: 14574563--14574755 Score: 185
Period size: 43 Copynumber: 4.5 Consensus size: 42
14574553 TTAAGATCTA
* * *
14574563 TAGCGACGATTGTGGGATAAGCACCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGT-GGATAAGCGCCGCTAAAGAACATGACCTT
* * *
14574606 TAGAGGCGCTTT-TGAGATAAGCGCCGCCAAAGAATATGACCTT
1 TAGCGGCG-TTTGTG-GATAAGCGCCGCTAAAGAACATGACCTT
* ** * *
14574649 TACCGAAGTTTGTGGAATAAGCGCCACTAAAGAGCAT--CCTT
1 TAGCGGCGTTTGTGG-ATAAGCGCCGCTAAAGAACATGACCTT
* * *
14574690 TAGTGGCGTTTGTGGGATAAGCGTCGCTAAAGAACATGAGCTT
1 TAGCGGCGTTTGT-GGATAAGCGCCGCTAAAGAACATGACCTT
14574733 TAGCGGCGTTTGTGGAATAAGCG
1 TAGCGGCGTTTGTGG-ATAAGCG
14574756 ACATTGTAAA
Statistics
Matches: 119, Mismatches: 23, Indels: 16
0.75 0.15 0.10
Matches are distributed among these distances:
41 31 0.26
42 9 0.08
43 77 0.65
44 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (42 bp):
TAGCGGCGTTTGTGGATAAGCGCCGCTAAAGAACATGACCTT
Found at i:14574702 original size:41 final size:42
Alignment explanation
Indices: 14574481--14574755 Score: 175
Period size: 43 Copynumber: 6.5 Consensus size: 42
14574471 CATCTATTAT
* * *
14574481 GGCGTTTTTGGAAAAAGTGCCACTAAAGAACATGACCTTTAGC
1 GGCGTTTGTGGAATAAGCGCCACTAAAGAACAT-ACCTTTAGC
* * ** * *
14574524 AGCGCTTGCAAGAA-AAGCGCCACTAAAAGTTAAGAT--CTATAGC
1 GGCGTTTG-TGGAATAAGCGCCACT-AAAG--AACATACCTTTAGC
* * * * * *
14574567 GACGATTGTGGGATAAGCACCGCTAAAGAACATGACCTTTAGA
1 GGCGTTTGTGGAATAAGCGCCACTAAAGAACAT-ACCTTTAGC
* * * *
14574610 GGCGCTTT-T-GAGATAAGCGCCGCCAAAGAATATGACCTTTACC
1 GGCG-TTTGTGGA-ATAAGCGCCACTAAAGAACAT-ACCTTTAGC
** * *
14574653 GAAGTTTGTGGAATAAGCGCCACTAAAGAGCAT-CCTTTAGT
1 GGCGTTTGTGGAATAAGCGCCACTAAAGAACATACCTTTAGC
* * * *
14574694 GGCGTTTGTGGGATAAGCGTCGCTAAAGAACATGAGCTTTAGC
1 GGCGTTTGTGGAATAAGCGCCACTAAAGAACAT-ACCTTTAGC
14574737 GGCGTTTGTGGAATAAGCG
1 GGCGTTTGTGGAATAAGCG
14574756 ACATTGTAAA
Statistics
Matches: 174, Mismatches: 44, Indels: 28
0.71 0.18 0.11
Matches are distributed among these distances:
40 4 0.02
41 33 0.19
42 10 0.06
43 112 0.64
44 11 0.06
46 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.24
Consensus pattern (42 bp):
GGCGTTTGTGGAATAAGCGCCACTAAAGAACATACCTTTAGC
Found at i:14574722 original size:84 final size:85
Alignment explanation
Indices: 14574572--14574755 Score: 219
Period size: 84 Copynumber: 2.2 Consensus size: 85
14574562 ATAGCGACGA
* * *
14574572 TTGTGGGATAAGCACCGCTAAAGAACATGACCTTTAGAGGCGCTTTTGAGATAAGCGCCGCCAAA
1 TTGTGGAATAAGCGCCACTAAAGAACAT-ACCTTTAGAGGCGCTTTTGAGATAAGCGCCGCCAAA
*
14574637 GAATATGACCTTTACCGAAGT
65 GAACATGACCTTTACCGAAGT
* * * * *
14574658 TTGTGGAATAAGCGCCACTAAAGAGCAT-CCTTTAGTGGCG-TTTGTGGGATAAGCGTCGCTAAA
1 TTGTGGAATAAGCGCCACTAAAGAACATACCTTTAGAGGCGCTTT-TGAGATAAGCGCCGCCAAA
* * **
14574721 GAACATGAGCTTTAGCGGCGT
65 GAACATGACCTTTACCGAAGT
14574742 TTGTGGAATAAGCG
1 TTGTGGAATAAGCG
14574756 ACATTGTAAA
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
83 3 0.04
84 57 0.68
86 24 0.29
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (85 bp):
TTGTGGAATAAGCGCCACTAAAGAACATACCTTTAGAGGCGCTTTTGAGATAAGCGCCGCCAAAG
AACATGACCTTTACCGAAGT
Found at i:14579268 original size:26 final size:26
Alignment explanation
Indices: 14579235--14579291 Score: 114
Period size: 26 Copynumber: 2.2 Consensus size: 26
14579225 TAAAGTGTTC
14579235 AAAATATGTAAAATTATTAAGCCAAA
1 AAAATATGTAAAATTATTAAGCCAAA
14579261 AAAATATGTAAAATTATTAAGCCAAA
1 AAAATATGTAAAATTATTAAGCCAAA
14579287 AAAAT
1 AAAAT
14579292 TTAGGTTAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.60, C:0.07, G:0.07, T:0.26
Consensus pattern (26 bp):
AAAATATGTAAAATTATTAAGCCAAA
Found at i:14579364 original size:28 final size:28
Alignment explanation
Indices: 14579289--14580677 Score: 1659
Period size: 28 Copynumber: 47.4 Consensus size: 28
14579279 AAGCCAAAAA
* *
14579289 AATTTAGGTTAGTTTTTGGGTTTTTAATT
1 AATTTAGGTTAG-ATTAGGGTTTTTAATT
*
14579318 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
14579347 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
14579375 AATTTAGGTCAGGGTTAGGTTAGGGTTTTTAGTT
1 AA-TT---T-A-GGTTAGATTAGGGTTTTTAATT
*
14579409 AATTTAGGTTAGATTAGGTTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
14579437 AATTTAGGTTAGGGTTAGGGTTTTAAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
* *
14579466 AATTTAAGTTAGATTAGGGTTTTAAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14579494 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
14579522 AATTTAGGCTAGGTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14579550 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14579578 AATTTAGGTTAGGGTTAGGTTAGGG-TTTTAGTT
1 AATTTAGGTTA--G--A--TTAGGGTTTTTAATT
*
14579611 AATTTAGGTTAGATTAGGTTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
14579639 AATTTAGGTTAGGGTTAGGGTTTTAAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
14579668 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14579696 AATTTAGGTTAGGTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14579724 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14579752 AATTTAGGTTAGGGTTAGGTTAGGGTTTTTAGTT
1 AATTTAGGTTA--G--A--TTAGGGTTTTTAATT
*
14579786 AATTTAGGTTAGATTAGGTTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
14579814 AATTTAGGTTAGGGTTAGGGTTTTAAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
14579843 AATTTAGGTTAGATTAGGGTTTTAAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14579871 AATTTAGGTTAGATTAGGGTTTTAAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14579899 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
14579927 AATTTAGGCTAGGTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14579955 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14579983 AATTTAGGTTATGGTTAGGTTAGGGTTTTTAGTT
1 AATTTAGGTTA--G--A--TTAGGGTTTTTAATT
*
14580017 AATTTAGGTTAGATTAGGTTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
14580045 AATTTAGGTTAGGGTTAGGGTTTTAAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
14580074 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
14580102 AATTTAGGTTAGGTTAGGGTTTTAAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14580130 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14580158 AATTTAGGTTAGGGTTAGGTTAGGGTTTTTAGTT
1 AATTTAGGTTA--G--A--TTAGGGTTTTTAATT
14580192 AATTTAGGTTAGATTA-GGTTCTTTAATT
1 AATTTAGGTTAGATTAGGGTT-TTTAATT
*
14580220 AATTTAGGTTAGGATTAGGGTTTTAAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
*
14580249 AATTTAGGTTAGATTAGGGTTTTAAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14580277 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14580305 AATTTAGGTTAGGGTTAGATTAGGGTTTTTAGTT
1 AA--T---TTA-GGTTAGATTAGGGTTTTTAATT
*
14580339 AATTTAGGTTAGGGTTAGGTTAGGGTTTTTAGTT
1 AATTTAGGTTA--G--A--TTAGGGTTTTTAATT
* *
14580373 AATTTAGGTTAGATTATGTTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
14580401 AATTTAGGTTAGGGTTAGGGTTTTAAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATT
* *
14580430 TATTTAGGTTAGATTAGGGTTTTAAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
* *
14580458 AATTTAGGTTAGATTAAGGTTTTAAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14580486 AATTTAGGTTAGATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14580514 AATTTAGGTTAGGGTTAGGTTAGGGTTTTTAGTT
1 AATTTAGGTTA--G--A--TTAGGGTTTTTAATT
14580548 AATTTAGGTTAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
*
14580576 AATTTAGGTTAGATTAAGGG-TTTTAGTT
1 AATTTAGGTTAGATT-AGGGTTTTTAATT
*
14580604 AATTTAGGTTAGGGTTAGGTTAGGGTTTTTAGTT
1 AATTTAGGTTA--G--A--TTAGGGTTTTTAATT
*
14580638 AATTTAGGTTAGATTAGGTTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATT
14580666 AATTTAGGTTAG
1 AATTTAGGTTAG
14580678 TGTTAGGTTA
Statistics
Matches: 1211, Mismatches: 83, Indels: 133
0.85 0.06 0.09
Matches are distributed among these distances:
27 9 0.01
28 742 0.61
29 192 0.16
30 20 0.02
31 1 0.00
32 15 0.01
33 29 0.02
34 203 0.17
ACGTcount: A:0.26, C:0.00, G:0.25, T:0.49
Consensus pattern (28 bp):
AATTTAGGTTAGATTAGGGTTTTTAATT
Found at i:14579445 original size:90 final size:89
Alignment explanation
Indices: 14579292--14580677 Score: 1694
Period size: 90 Copynumber: 15.7 Consensus size: 89
14579282 CCAAAAAAAT
* * * *
14579292 TTAGGTTAGTTTTTGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTT
1 TTAGGTTAG-GTTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTT
14579357 AGATTAGGGTTTTTAATTAATTTAGG
64 AGATTAGGGTTTTTAATTAATTTAGG
* *
14579383 TCAGGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGTTTTTTAATTAATTTAGGTTA
1 TTA-GGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTA
* *
14579448 GGGTTAGGGTTTTAAATTAATTTA--
65 -GATTAGGGTTTTTAATTAATTTAGG
* * * * *
14579472 --A-GTTAGATTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGCTAG
1 TTAGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAG
*
14579534 GTTAGGGTTTTTAATTAATTTAGG
66 ATTAGGGTTTTTAATTAATTTAGG
*
14579558 TTA-G--A--TTAGGGTTTTTAGTTAATTTAGGTTAGGGTTAGGTTAGGG-TTTTAGTTAATTTA
1 TTAGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTA--G--A--TTAGGGTTTTTAATTAATTTA
*
14579617 GGTTAGATTAGGTTTTTTAATTAATTTAGG
60 GGTTAGATTAGGGTTTTTAATTAATTTAGG
* * *
14579647 TTA-G---GGTTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAG
1 TTAGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAG
*
14579708 GTTAGGGTTTTTAATTAATTTAGG
66 ATTAGGGTTTTTAATTAATTTAGG
*
14579732 TTA-G--A--TTAGGGTTTTTAGTTAATTTAGGTTAGGGTTAGGTTAGGGTTTTTAGTTAATTTA
1 TTAGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTA--G--A--TTAGGGTTTTTAATTAATTTA
*
14579792 GGTTAGATTAGGTTTTTTAATTAATTTAGG
60 GGTTAGATTAGGGTTTTTAATTAATTTAGG
* * *
14579822 TTA-G---GGTTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTAAATTAATTTAGGTTAG
1 TTAGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAG
*
14579883 ATTAGGGTTTTAAATTAATTTAGG
66 ATTAGGGTTTTTAATTAATTTAGG
* *
14579907 TTA-G--A--TTAGGGTTTTTAGTTAATTTAGGCTAGGTTAGGGTTTTTAATTAATTTAGGTTAG
1 TTAGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAG
*
14579967 ATTAGGGTTTTTAGTTAATTTAGG
66 ATTAGGGTTTTTAATTAATTTAGG
*
14579991 TTATGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGTTTTTTAATTAATTTAGGTTA
1 TTA-GGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTA
* *
14580056 GGGTTAGGGTTTTAAATTAATTTAGG
65 -GATTAGGGTTTTTAATTAATTTAGG
* *
14580082 TTA-G--A--TTAGGGTTTTTAGTTAATTTAGGTTAGGTTAGGGTTTTAAATTAATTTAGGTTAG
1 TTAGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAG
*
14580142 ATTAGGGTTTTTAGTTAATTTAGG
66 ATTAGGGTTTTTAATTAATTTAGG
14580166 TTAGGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTA-GGTTCTTTAATTAATTTAGGTT
1 TTA-GGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTT-TTTAATTAATTTAGGTT
*
14580230 AGGATTAGGGTTTTAAATTAATTTAGG
64 A-GATTAGGGTTTTTAATTAATTTAGG
* * *
14580257 TTA-G--A--TTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAG
1 TTAGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAA--T---TTA-
*
14580317 GGTTAGATTAGGGTTTTTAGTTAATTTAGG
60 GGTTAGATTAGGGTTTTTAATTAATTTAGG
* *
14580347 TTAGGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTATGTTTTTTAATTAATTTAGGTTA
1 TTA-GGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTA
* *
14580412 GGGTTAGGG-TTTT-A--AATTTA-T
65 -GATTAGGGTTTTTAATTAATTTAGG
* * * * *
14580433 TTAGGTTAGATTAGGGTTTTAAATTAATTTAGGTTAGATTAAGGTTTTAAATTAATTTAGGTTAG
1 TTAGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAG
*
14580498 ATTAGGGTTTTTAGTTAATTTAGG
66 ATTAGGGTTTTTAATTAATTTAGG
14580522 TTAGGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTA
1 TTA-GGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTA
*
14580587 GATTAAGGG-TTTTAGTTAATTTAGG
65 GATT-AGGGTTTTTAATTAATTTAGG
*
14580612 TTAGGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGTTTTTTAATTAATTTAGGTTA
1 TTA-GGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTA
14580677 G
65 G
14580678 TGTTAGGTTA
Statistics
Matches: 1149, Mismatches: 85, Indels: 123
0.85 0.06 0.09
Matches are distributed among these distances:
84 183 0.16
85 298 0.26
86 13 0.01
87 11 0.01
88 13 0.01
89 55 0.05
90 386 0.34
91 141 0.12
92 7 0.01
94 2 0.00
96 40 0.03
ACGTcount: A:0.26, C:0.00, G:0.25, T:0.49
Consensus pattern (89 bp):
TTAGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAG
ATTAGGGTTTTTAATTAATTTAGG
Found at i:14579617 original size:17 final size:17
Alignment explanation
Indices: 14579563--14579618 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
14579553 TTAGGTTAGA
14579563 TTAGGGTTTTTAGTTAAT
1 TTAGGG-TTTTAGTTAAT
*** **
14579581 TTA-GGTTAGGGTTAGG
1 TTAGGGTTTTAGTTAAT
14579597 TTAGGGTTTTAGTTAAT
1 TTAGGGTTTTAGTTAAT
14579614 TTAGG
1 TTAGG
14579619 TTAGATTAGG
Statistics
Matches: 27, Mismatches: 10, Indels: 3
0.68 0.25 0.08
Matches are distributed among these distances:
16 9 0.33
17 15 0.56
18 3 0.11
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.48
Consensus pattern (17 bp):
TTAGGGTTTTAGTTAAT
Found at i:14579877 original size:175 final size:176
Alignment explanation
Indices: 14579289--14580677 Score: 1701
Period size: 175 Copynumber: 7.9 Consensus size: 176
14579279 AAGCCAAAAA
* * *
14579289 AATTTAGGTTA-GT-TTTTGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATTAATTT
1 AATTTAGGTTAGGTGGTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAATTAATTT
* * *
14579352 AGGTTAGATTAGGGTTTTTAATTAATTTAGGTCAGGGTTAGGTTAGGGTTTTTAGTTAATTTAGG
65 AGGTTAGGTTAGGGTTTTAAATTAA-TT---T-A-GGTTAGATTAGGGTTTTTAGTTAATTTAGG
* * * *
14579417 TTA-G--A--TTAGGTTTTTTAATTAATTTAGGTTAGGGTTAGGGTTTTAAATT
124 TTAGGTTAGGTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTT
* * * *
14579466 AATTTAAGTTA---GATTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAATTTA
1 AATTTAGGTTAGGTGGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTA
* *
14579528 GGCTAGGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGGT
66 GGTTAGGTTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTA-GGT
* * *
14579593 TAGGTTAGGG-TTTTAGTTAATTTAGGTTAGATTAGGTTTTTTAATT
130 TAGGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
* *
14579639 AATTTAGGTTA-G-GGTTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAATTTA
1 AATTTAGGTTAGGTGGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTA
*
14579702 GGTTAGGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGGT
66 GGTTAGGTTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTA-GGT
* * *
14579767 TAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGTTTTTTAATT
130 TAGGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
* *
14579814 AATTTAGGTTA-G-GGTTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTAAATTAATTTA
1 AATTTAGGTTAGGTGGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTA
* *
14579877 GGTTAGATTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAA--T---TTAGGCT
66 GGTTAGGTTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTT
14579937 AGGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
131 AGGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
* *
14579983 AATTTAGGTTATGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGTTTTTTAATTAAT
1 AATTTAGGTTA-GG-T-GGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAATTAAT
14580048 TTAGGTTAGGGTTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAA--T---TTA
63 TTAGGTTA-GGTTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTA
*
14580108 GGTTAGGTTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
127 GGTTAGGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
*
14580158 AATTTAGGTTAGGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTA-GGTTCTTTAATTAA
1 AATTTAGGTTA-GG-T-GGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTT-TTTAATTAA
* *
14580222 TTTAGGTTAGGATTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTAAATTAATTTAGGTT
62 TTTAGGTTAGG-TTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTT
*
14580287 A-G--A--TTAGGGTTTTTAGTTAATTTAGGTTAGGGTTAGATTAGGGTTTTTAGTT
126 AGGTTAGGTTAGGGTTTTTAATTAA--T---TTA-GGTTAGATTAGGGTTTTTAGTT
* * *
14580339 AATTTAGGTTAGGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTATGTTTTTTAATTAAT
1 AATTTAGGTTA-GG-T-GGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAATTAAT
* * *
14580404 TTAGGTTAGGGTTAGGGTTTTAAATTTATTTAGGTTAGATTAGGGTTTTAAATTAATTTAGGTTA
63 TTAGGTTA-GGTTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTA
* *
14580469 -G--A--TTAAGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
127 GGTTAGGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
*
14580514 AATTTAGGTTAGGGTTAGGTTAGGGTTTTTAGTTAATTTAGGTTAGATTAGGGTTTTTAATTAAT
1 AATTTAGGTTA-GG-T-GGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAATTAAT
* *
14580579 TTAGGTTAGATTAAGGGTTTT-AGTTAATTTAGGTTAGGGTTAGGTTAGGGTTTTTAGTTAATTT
63 TTAGGTTAGGTT-AGGGTTTTAAATTAATTTAGGTTA--G--A--TTAGGGTTTTTAGTTAATTT
*
14580643 AGGTTA-G--A--TTAGGTTTTTTAATTAATTTAGGTTAG
121 AGGTTAGGTTAGGTTAGGGTTTTTAATTAATTTAGGTTAG
14580678 TGTTAGGTTA
Statistics
Matches: 1122, Mismatches: 53, Indels: 71
0.90 0.04 0.06
Matches are distributed among these distances:
169 89 0.08
170 4 0.00
171 3 0.00
173 26 0.02
174 217 0.19
175 519 0.46
176 28 0.02
177 13 0.01
178 1 0.00
179 2 0.00
180 56 0.05
181 159 0.14
182 5 0.00
ACGTcount: A:0.26, C:0.00, G:0.25, T:0.49
Consensus pattern (176 bp):
AATTTAGGTTAGGTGGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAATTAATTTA
GGTTAGGTTAGGGTTTTAAATTAATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTT
AGGTTAGGGTTTTTAATTAATTTAGGTTAGATTAGGGTTTTTAGTT
Found at i:14580786 original size:26 final size:25
Alignment explanation
Indices: 14580755--14580803 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
14580745 CTTAAAAAAT
14580755 TTCTATGCGTATTACATCAAATAAAC
1 TTCTAT-CGTATTACATCAAATAAAC
**
14580781 TTCTATTTTATTACATCAAATAA
1 TTCTATCGTATTACATCAAATAA
14580804 TAAAATTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.39, C:0.16, G:0.04, T:0.41
Consensus pattern (25 bp):
TTCTATCGTATTACATCAAATAAAC
Found at i:14580944 original size:24 final size:24
Alignment explanation
Indices: 14580917--14580969 Score: 79
Period size: 24 Copynumber: 2.2 Consensus size: 24
14580907 GGCGGTTGTT
*
14580917 CTTCCTCTGGTGGTGATTGTGGTC
1 CTTCCTCCGGTGGTGATTGTGGTC
* *
14580941 CTTCCTCCGGTGGTGGTTGTGGTT
1 CTTCCTCCGGTGGTGATTGTGGTC
14580965 CTTCC
1 CTTCC
14580970 GGTTCCGCAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.02, C:0.25, G:0.32, T:0.42
Consensus pattern (24 bp):
CTTCCTCCGGTGGTGATTGTGGTC
Found at i:14581268 original size:18 final size:18
Alignment explanation
Indices: 14581224--14581269 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
14581214 TATTCGGAAA
* *
14581224 AGGATACATGTAAGGGTT
1 AGGATACATATAAGGGCT
*
14581242 AGGGTACATATAAGGGCT
1 AGGATACATATAAGGGCT
*
14581260 AGGAAACATA
1 AGGATACATA
14581270 CCTGGCATCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.30, T:0.22
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:14581924 original size:7 final size:7
Alignment explanation
Indices: 14581914--14581938 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
14581904 TTATATACAT
14581914 AATACTA
1 AATACTA
14581921 AATACTA
1 AATACTA
14581928 AATACTA
1 AATACTA
14581935 AATA
1 AATA
14581939 TCAATCGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:14583052 original size:30 final size:30
Alignment explanation
Indices: 14583018--14583082 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
14583008 GCCATTGATG
*
14583018 AAAATATAAAAAAATTTAAAATTATTTTAA
1 AAAATATAAAAAAAATTAAAATTATTTTAA
*
14583048 AAAATATAAAAAAAATTATAATTATTTTAA
1 AAAATATAAAAAAAATTAAAATTATTTTAA
14583078 AAAAT
1 AAAAT
14583083 GGATTTGAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (30 bp):
AAAATATAAAAAAAATTAAAATTATTTTAA
Found at i:14583154 original size:21 final size:22
Alignment explanation
Indices: 14583127--14583176 Score: 93
Period size: 21 Copynumber: 2.3 Consensus size: 22
14583117 AAATATGAGT
14583127 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
14583149 TT-AGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
14583170 TTGAGAG
1 TTGAGAG
14583177 GATTAGAGAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 21 0.78
22 6 0.22
ACGTcount: A:0.40, C:0.00, G:0.32, T:0.28
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:14588767 original size:6 final size:6
Alignment explanation
Indices: 14588756--14588786 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
14588746 CTTTGTTCAG
14588756 AGCCAA AGCCAA AGCCAA AGCCAA AGCCAA A
1 AGCCAA AGCCAA AGCCAA AGCCAA AGCCAA A
14588787 CAAATAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.52, C:0.32, G:0.16, T:0.00
Consensus pattern (6 bp):
AGCCAA
Found at i:14595403 original size:17 final size:18
Alignment explanation
Indices: 14595369--14595414 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
14595359 CCGTTATGTC
14595369 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
14595384 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
14595401 CGCGACCGCGACCG
1 CGCGACCGCGACCG
14595415 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Found at i:14602956 original size:91 final size:91
Alignment explanation
Indices: 14602809--14603016 Score: 344
Period size: 91 Copynumber: 2.3 Consensus size: 91
14602799 TTGATTTTAG
* *
14602809 TAAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTAT
1 TAAATTCATATAAGAA-AATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTAT
* * *
14602874 ATTTAATATTAATTATTTTAAATTGTA
65 ATGTAATAATAATTATTTTAAATTATA
*
14602901 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATTATTATTAAATTATA
1 TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
14602966 TGTAATAATAATTATTTTAAATTATA
66 TGTAATAATAATTATTTTAAATTATA
*
14602992 CAAATTCATATAAGAAAATTTATTA
1 TAAATTCATATAAGAAAATTTATTA
14603017 GTTATAATTA
Statistics
Matches: 109, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
91 93 0.85
92 16 0.15
ACGTcount: A:0.46, C:0.03, G:0.04, T:0.46
Consensus pattern (91 bp):
TAAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATCATTATTAAATTATA
TGTAATAATAATTATTTTAAATTATA
Found at i:14602985 original size:26 final size:28
Alignment explanation
Indices: 14602931--14602991 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
14602921 TATTATCAAG
* *
14602931 AATTTTATGAAATTATATATTATTATTA
1 AATTATATGAAATAATATATTATTATTA
*
14602959 AATTATATGTAATAATA-ATTATT-TTA
1 AATTATATGAAATAATATATTATTATTA
14602985 AATTATA
1 AATTATA
14602992 CAAATTCATA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
26 10 0.33
27 6 0.20
28 14 0.47
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (28 bp):
AATTATATGAAATAATATATTATTATTA
Found at i:14602991 original size:44 final size:43
Alignment explanation
Indices: 14602849--14602991 Score: 121
Period size: 44 Copynumber: 3.2 Consensus size: 43
14602839 GAATTTTATG
* *
14602849 AAATTATATATCATTATTAAATTATATTTAATATTAATTATTTT
1 AAATTATATATTATTATTAAATTATA-TTAATAATAATTATTTT
* ** * *
14602893 AAATTGTATAAATTCATATAAGAAAATT-TATT-ATCAAGAATT-TTATG
1 AAA-T-TATATATT-AT-T-ATTAAATTATATTAAT-AATAATTATT-TT
14602940 AAATTATATATTATTATTAAATTATATGTAATAATAATTATTTT
1 AAATTATATATTATTATTAAATTATAT-TAATAATAATTATTTT
14602984 AAATTATA
1 AAATTATA
14602992 CAAATTCATA
Statistics
Matches: 76, Mismatches: 12, Indels: 22
0.69 0.11 0.20
Matches are distributed among these distances:
42 6 0.08
43 4 0.05
44 21 0.28
45 12 0.16
46 11 0.14
47 13 0.17
48 3 0.04
49 6 0.08
ACGTcount: A:0.46, C:0.02, G:0.03, T:0.48
Consensus pattern (43 bp):
AAATTATATATTATTATTAAATTATATTAATAATAATTATTTT
Found at i:14603047 original size:91 final size:89
Alignment explanation
Indices: 14602810--14603047 Score: 291
Period size: 91 Copynumber: 2.6 Consensus size: 89
14602800 TGATTTTAGT
* * *
14602810 AAATTCATATAAGAACATTTTATTATTAAGAATTTTATGAAATTATATATCATTATTAAATTATA
1 AAATTCATATAAGAA-AATTTATTATT-AGAATTTTATGAAATTTTAT-TAATTATTAAATTATA
* * * *
14602875 TTTAATATTAATTATTTTAAATTGTAT
63 TGTAATAATAATTATTTTAAATTATAC
*
14602902 AAATTCATATAAGAAAATTTATTATCAAGAATTTTATGAAATTATATATT-ATTATTAAATTATA
1 AAATTCATATAAGAAAATTTATTAT-TAGAATTTTATGAAATT-T-TATTAATTATTAAATTATA
14602966 TGTAATAATAATTATTTTAAATTATAC
63 TGTAATAATAATTATTTTAAATTATAC
* *
14602993 AAATTCATATAAGAAAATTTATTAGTTATAATTATT-TTAAATTTTATTAAATTAT
1 AAATTCATATAAGAAAATTTATTA-TTAGAATT-TTATGAAATTTTATT-AATTAT
14603048 ATATTTTAAT
Statistics
Matches: 129, Mismatches: 10, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
89 4 0.03
90 1 0.01
91 102 0.79
92 19 0.15
93 3 0.02
ACGTcount: A:0.45, C:0.03, G:0.04, T:0.47
Consensus pattern (89 bp):
AAATTCATATAAGAAAATTTATTATTAGAATTTTATGAAATTTTATTAATTATTAAATTATATGT
AATAATAATTATTTTAAATTATAC
Found at i:14603061 original size:18 final size:17
Alignment explanation
Indices: 14603033--14603067 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14603023 ATTATTTTAA
*
14603033 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
14603050 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
14603068 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:14603156 original size:120 final size:120
Alignment explanation
Indices: 14603032--14603569 Score: 920
Period size: 120 Copynumber: 4.5 Consensus size: 120
14603022 AATTATTTTA
14603032 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATGTT-AAATTATCTTT
14603096 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
14603152 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATCTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATGTT-AAATTATCTTT
* *
14603216 TACAGTGTCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
14603272 AATTTTATTAAATTATATATTTTAATTAAAATATGTTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATGTTAAATTATCTTTT
*
14603337 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATTTTAATTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* * *
14603392 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATT-ATTATGTTAATTTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAAT-ATTAATTATGTTAAATTATCTTT
*
14603456 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGATTATTAAG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
* *
14603512 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATTATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATG-TTAAAT
14603570 ATGATTAAAT
Statistics
Matches: 398, Mismatches: 16, Indels: 7
0.95 0.04 0.02
Matches are distributed among these distances:
119 2 0.01
120 387 0.97
121 9 0.02
ACGTcount: A:0.42, C:0.03, G:0.06, T:0.50
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATATTAATTATGTTAAATTATCTTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTAATTATTAAG
Found at i:14603181 original size:18 final size:17
Alignment explanation
Indices: 14603153--14603187 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14603143 ATTATTAAGA
*
14603153 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
14603170 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
14603188 TTAATATTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:14603547 original size:16 final size:16
Alignment explanation
Indices: 14603526--14603567 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
14603516 TTATTAAATT
*
14603526 ATATATTTTAATTATA
1 ATATATTTTAATAATA
14603542 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
14603557 AT-TATGTTTAA
1 ATATAT-TTTAA
14603568 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:14603552 original size:15 final size:15
Alignment explanation
Indices: 14603517--14603558 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14603507 TTAAGAATTT
*
14603517 TATTAAATTAT-ATA
1 TATTTAATTATAATA
14603531 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
14603545 TATTTAATAATAAT
1 TATTTAATTATAAT
14603559 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:14604272 original size:21 final size:21
Alignment explanation
Indices: 14604246--14604290 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
14604236 CTAATGAAAT
14604246 CCATTTTCTTCAGTTTTCTCA
1 CCATTTTCTTCAGTTTTCTCA
*
14604267 CCATTTTCTTTAGTTTTCTCA
1 CCATTTTCTTCAGTTTTCTCA
14604288 CCA
1 CCA
14604291 ACCAAACAGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.16, C:0.29, G:0.04, T:0.51
Consensus pattern (21 bp):
CCATTTTCTTCAGTTTTCTCA
Found at i:14604482 original size:26 final size:26
Alignment explanation
Indices: 14604432--14604484 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 26
14604422 CAGGATTAAG
14604432 AAAATCTGGGAAAGCATCGAGAAAAA
1 AAAATCTGGGAAAGCATCGAGAAAAA
*
14604458 AAAAT-TGGGAAAGCATTGAGAAAAA
1 AAAATCTGGGAAAGCATCGAGAAAAA
14604483 AA
1 AA
14604485 TGTAAGCATG
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 21 0.81
26 5 0.19
ACGTcount: A:0.57, C:0.08, G:0.23, T:0.13
Consensus pattern (26 bp):
AAAATCTGGGAAAGCATCGAGAAAAA
Found at i:14605773 original size:19 final size:19
Alignment explanation
Indices: 14605750--14605800 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
14605740 ATTATTTTAA
*
14605750 AATTTTAATATTAAAATTT-
1 AATTTTAATAAT-AAATTTG
*
14605769 TATTTTAATAATAAATTTG
1 AATTTTAATAATAAATTTG
14605788 AATTTTAATAATA
1 AATTTTAATAATA
14605801 TTATTAATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
18 6 0.21
19 22 0.79
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
AATTTTAATAATAAATTTG
Found at i:14606985 original size:3 final size:3
Alignment explanation
Indices: 14606977--14607011 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
14606967 TAGCTGGGTG
*
14606977 GAA GAA GAA GAA GAA AAA GAA GAA GAA GAA GAA GA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GA
14607012 GAAACCAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:14609396 original size:17 final size:17
Alignment explanation
Indices: 14609341--14609401 Score: 56
Period size: 16 Copynumber: 3.7 Consensus size: 17
14609331 ACTTAATCAC
*
14609341 TTTAATATTAAAT-TAA
1 TTTAATATTAAATAAAA
* *
14609357 TATAATATT-TATAAAGA
1 TTTAATATTAAATAAA-A
*
14609374 -TAAATATTAAATAAAA
1 TTTAATATTAAATAAAA
14609390 TTTAATATTAAA
1 TTTAATATTAAA
14609402 ATTTATTAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 7
0.71 0.15 0.15
Matches are distributed among these distances:
15 2 0.06
16 16 0.47
17 16 0.47
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.43
Consensus pattern (17 bp):
TTTAATATTAAATAAAA
Found at i:14617673 original size:13 final size:13
Alignment explanation
Indices: 14617655--14617679 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14617645 GGGTGTGTGG
14617655 GACCACATGGGCA
1 GACCACATGGGCA
14617668 GACCACATGGGC
1 GACCACATGGGC
14617680 GTGTGAGCCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.32, G:0.32, T:0.08
Consensus pattern (13 bp):
GACCACATGGGCA
Found at i:14622071 original size:22 final size:22
Alignment explanation
Indices: 14622046--14622142 Score: 106
Period size: 22 Copynumber: 4.4 Consensus size: 22
14622036 TGCACTTCTA
*
14622046 TGCCTACTACTTTGCACTATGG
1 TGCCTACTAATTTGCACTATGG
*
14622068 TGCCTAATAATTTGCACTATGG
1 TGCCTACTAATTTGCACTATGG
* ** * *
14622090 TGCTTACTGCTTTGCACTTTAG
1 TGCCTACTAATTTGCACTATGG
*
14622112 TGCCTACAAATTTGCACCT-TGG
1 TGCCTACTAATTTGCA-CTATGG
14622134 TGCCTACTA
1 TGCCTACTA
14622143 TTAAACACTT
Statistics
Matches: 60, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
22 58 0.97
23 2 0.03
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (22 bp):
TGCCTACTAATTTGCACTATGG
Found at i:14622103 original size:44 final size:44
Alignment explanation
Indices: 14622046--14622142 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 44
14622036 TGCACTTCTA
*
14622046 TGCCTACTACTTTGCACTATGGTGCCTA-ATAATTTGCA-CTATGG
1 TGCCTACTACTTTGCACTATAGTGCCTACA-AATTTGCACCT-TGG
* * *
14622090 TGCTTACTGCTTTGCACTTTAGTGCCTACAAATTTGCACCTTGG
1 TGCCTACTACTTTGCACTATAGTGCCTACAAATTTGCACCTTGG
14622134 TGCCTACTA
1 TGCCTACTA
14622143 TTAAACACTT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
44 42 0.93
45 3 0.07
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (44 bp):
TGCCTACTACTTTGCACTATAGTGCCTACAAATTTGCACCTTGG
Found at i:14622159 original size:22 final size:23
Alignment explanation
Indices: 14622133--14622184 Score: 81
Period size: 22 Copynumber: 2.3 Consensus size: 23
14622123 TTGCACCTTG
14622133 GTGCCTACTATTAAA-CACTTC-
1 GTGCCTACTATTAAAGCACTTCA
14622154 GATGCCTACTATTAAAGCACTTCA
1 G-TGCCTACTATTAAAGCACTTCA
14622178 GTGCCTA
1 GTGCCTA
14622185 TTGGTGTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 1 0.04
22 14 0.50
23 12 0.43
24 1 0.04
ACGTcount: A:0.29, C:0.27, G:0.13, T:0.31
Consensus pattern (23 bp):
GTGCCTACTATTAAAGCACTTCA
Found at i:14626141 original size:10 final size:10
Alignment explanation
Indices: 14626126--14626155 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
14626116 GATATATGTA
*
14626126 TGTTTTGATT
1 TGTTTTGAAT
14626136 TGTTTTGAAT
1 TGTTTTGAAT
14626146 TGTTTTGAAT
1 TGTTTTGAAT
14626156 AGGTTACTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.17, C:0.00, G:0.20, T:0.63
Consensus pattern (10 bp):
TGTTTTGAAT
Found at i:14628022 original size:16 final size:16
Alignment explanation
Indices: 14628001--14628032 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
14627991 TAATTGGTTG
*
14628001 ATTTTTAGTTTAATTA
1 ATTTTTAGGTTAATTA
14628017 ATTTTTAGGTTAATTA
1 ATTTTTAGGTTAATTA
14628033 GATTAATTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.00, G:0.09, T:0.59
Consensus pattern (16 bp):
ATTTTTAGGTTAATTA
Found at i:14628411 original size:19 final size:20
Alignment explanation
Indices: 14628388--14628435 Score: 64
Period size: 18 Copynumber: 2.5 Consensus size: 20
14628378 TATAGATACA
* *
14628388 AATTTATTTTATTTTATTTT
1 AATTTATTTCATTTGATTTT
14628408 -ATTTA-TTCATTTGATTTT
1 AATTTATTTCATTTGATTTT
14628426 AATTTATTTC
1 AATTTATTTC
14628436 TAATTCTCTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 11 0.46
19 10 0.42
20 3 0.12
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (20 bp):
AATTTATTTCATTTGATTTT
Found at i:14631498 original size:37 final size:37
Alignment explanation
Indices: 14631448--14631526 Score: 108
Period size: 37 Copynumber: 2.1 Consensus size: 37
14631438 TTATTACGAA
* *
14631448 GTCTTACCCGGACATAATCTCCACACG-A-AGTTATCGG
1 GTCTTACCCGGACAAAATC-CC-CACGCATAGTCATCGG
14631485 GTCTTACCCGGACAAAATCCCCACGCATAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACGCATAGTCATCGG
14631522 GTCTT
1 GTCTT
14631527 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
35 4 0.11
36 3 0.08
37 31 0.82
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACGCATAGTCATCGG
Found at i:14631723 original size:47 final size:47
Alignment explanation
Indices: 14631645--14632347 Score: 1046
Period size: 47 Copynumber: 14.5 Consensus size: 47
14631635 CCCTTCGGGA
* * * * * *
14631645 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14631692 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14631739 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14631786 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14631833 CTTATCACATATGTACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14631880 CTTACCACATATATACACCTTCACATTCATCACATCGGCCATTAGGCCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACAT----C----GG-CCATTAGGC
*
14631936 CTTATCGCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14631985 CTTATCGCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14632034 CTTATCACATATATACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14632081 CTTATCGCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14632128 CTTATCGCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14632177 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14632224 CTTATCGCATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTAT--CACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14632273 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14632322 CTTATCACATATATATACACTTTCAC
1 CTTATCAC--ATATATACACTTTCAC
14632348 GTATACACAC
Statistics
Matches: 609, Mismatches: 30, Indels: 32
0.91 0.04 0.05
Matches are distributed among these distances:
47 343 0.56
49 219 0.36
50 2 0.00
51 1 0.00
54 1 0.00
55 2 0.00
56 13 0.02
58 28 0.05
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14631980 original size:49 final size:48
Alignment explanation
Indices: 14631927--14632347 Score: 695
Period size: 49 Copynumber: 8.7 Consensus size: 48
14631917 GCCATTAGGC
*
14631927 CCATTAGGCCTTATCGCATATATATACACTTTCACATTCATCACATCGG
1 CCATTAGGCCTTATC-CACATATATACACTTTCACATTCATCACATCGG
*
14631976 CCATTAGGCCTTATCGCATATATATACACTTTCACATTCATCACATCGG
1 CCATTAGGCCTTATC-CACATATATACACTTTCACATTCATCACATCGG
*
14632025 CCATTAGGCCTTAT-CACATATATACACTTTTACATTCATCACATCGG
1 CCATTAGGCCTTATCCACATATATACACTTTCACATTCATCACATCGG
*
14632072 CCATTAGGCCTTAT-CGCATATATACACTTTCACATTCATCACATCGG
1 CCATTAGGCCTTATCCACATATATACACTTTCACATTCATCACATCGG
*
14632119 CCATTAGGCCTTATCGCATATATATACACTTTCACATTCATCACATCGG
1 CCATTAGGCCTTATC-CACATATATACACTTTCACATTCATCACATCGG
14632168 CCATTAGGCCTTAT-CACATATATACACTTTCACATTCATCACATCGG
1 CCATTAGGCCTTATCCACATATATACACTTTCACATTCATCACATCGG
*
14632215 CCATTAGGCCTTATCGCATATATATACACTTTCACATTCATCACATCGG
1 CCATTAGGCCTTATC-CACATATATACACTTTCACATTCATCACATCGG
*
14632264 CCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGG
1 CCATTAGGCCTTATC-CACATATATACACTTTCACATTCATCACATCGG
*
14632313 CCATTAGGCCTTATCACATATATATACACTTTCAC
1 CCATTAGGCCTTATC-CACATATATACACTTTCAC
14632348 GTATACACAC
Statistics
Matches: 359, Mismatches: 9, Indels: 8
0.95 0.02 0.02
Matches are distributed among these distances:
47 136 0.38
49 223 0.62
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (48 bp):
CCATTAGGCCTTATCCACATATATACACTTTCACATTCATCACATCGG
Found at i:14635838 original size:28 final size:29
Alignment explanation
Indices: 14635807--14635883 Score: 122
Period size: 29 Copynumber: 2.7 Consensus size: 29
14635797 AAAAATAAAA
14635807 ATTTACCAAAATAT-TACAAATTTTTT-TT
1 ATTTACCAAAATATATA-AAATTTTTTATT
*
14635835 ATTTACCAAAATATATAAACTTTTTTATT
1 ATTTACCAAAATATATAAAATTTTTTATT
14635864 ATTTACCAAAATATATAAAA
1 ATTTACCAAAATATATAAAA
14635884 AAACACAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
28 22 0.49
29 23 0.51
ACGTcount: A:0.45, C:0.10, G:0.00, T:0.44
Consensus pattern (29 bp):
ATTTACCAAAATATATAAAATTTTTTATT
Found at i:14635987 original size:27 final size:27
Alignment explanation
Indices: 14635957--14636023 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
14635947 CGCCAATGGT
14635957 ATTGGCGGCACCAAAGGTGCCAAAACC
1 ATTGGCGGCACCAAAGGTGCCAAAACC
* *
14635984 ATTGGCGGCACCAATGGTGCCAATACC
1 ATTGGCGGCACCAAAGGTGCCAAAACC
14636011 ATTGGCGGCACCA
1 ATTGGCGGCACCA
14636024 GTTGGTTTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.28, C:0.30, G:0.27, T:0.15
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAAAACC
Found at i:14636095 original size:22 final size:23
Alignment explanation
Indices: 14636070--14636201 Score: 126
Period size: 22 Copynumber: 5.6 Consensus size: 23
14636060 AGAAAAAAAG
14636070 GAAAGAAAGAAAGGAG-AGGAAA
1 GAAAGAAAGAAAGGAGAAGGAAA
14636092 GAAAGAAAGAAAGGAG-AGGAAA
1 GAAAGAAAGAAAGGAGAAGGAAA
*
14636114 GAAAGAAAGGAGAGGAGAAGAGAAA
1 GAAAGAAA-GAAAGGAGAAG-GAAA
* *
14636139 -AAAGGAAAGAAAGAAGAAGAAAA
1 GAAA-GAAAGAAAGGAGAAGGAAA
** *
14636162 GGAGAAGAGAAGAAAAAAGAAAGAAA
1 -GA-AAGA-AAGAAAGGAGAAGGAAA
*
14636188 GAAGGAAAGAAAGG
1 GAAAGAAAGAAAGG
14636202 GAAAGGAGAA
Statistics
Matches: 92, Mismatches: 10, Indels: 15
0.79 0.09 0.13
Matches are distributed among these distances:
22 30 0.33
23 16 0.17
24 17 0.18
25 13 0.14
26 16 0.17
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (23 bp):
GAAAGAAAGAAAGGAGAAGGAAA
Found at i:14636114 original size:40 final size:40
Alignment explanation
Indices: 14636068--14636226 Score: 166
Period size: 40 Copynumber: 3.9 Consensus size: 40
14636058 AGAGAAAAAA
*
14636068 AGGAAAGAAAGAAAGGAGAGGA-AAGAAAGAAAGAAAGGAG
1 AGGAAAGAAAGAAAGGAGAAGAGAAGAAA-AAAGAAAGGAG
* *
14636108 AGGAAAGAAAGAAAGGAGAGGAGAAG-AGAAA-AAAGGA-
1 AGGAAAGAAAGAAAGGAGAAGAGAAGAAAAAAGAAAGGAG
* *
14636145 AAGAAAGAAGAAGAAAAGGAGAAGAGAAGAAAAAAGAAAGAAAG
1 AGGAAAG-A-AAG-AAAGGAGAAGAGAAGAAAAAAGAAAG-GAG
14636189 AAGGAAAGAAAGGGAAAGGAGAAGAGAA-AAAAAAGAAA
1 -AGGAAAGAAA--GAAAGGAGAAGAGAAGAAAAAAGAAA
14636227 AAGAAGAGGG
Statistics
Matches: 102, Mismatches: 6, Indels: 19
0.80 0.05 0.15
Matches are distributed among these distances:
37 6 0.06
38 7 0.07
39 6 0.06
40 37 0.36
41 7 0.07
42 4 0.04
43 13 0.13
44 15 0.15
45 7 0.07
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (40 bp):
AGGAAAGAAAGAAAGGAGAAGAGAAGAAAAAAGAAAGGAG
Found at i:14636194 original size:49 final size:43
Alignment explanation
Indices: 14636067--14636244 Score: 155
Period size: 40 Copynumber: 4.3 Consensus size: 43
14636057 AAGAGAAAAA
*
14636067 AAGGAAAGAAA--GAAAGGAG-AG-G-AAAGAAAGAAAGAAAGG
1 AAGGAAAGAAAGGGAAAGGAGAAGAGAAAAAAAAGAAAGAAA-G
* * *
14636106 AGAGGAAAGAAA--GAAAGGAGAGGAGAAGAGAAAA-AAGGAAAG
1 A-AGGAAAGAAAGGGAAAGGAGAAGAGAA-AAAAAAGAAAGAAAG
* *
14636148 AAAG-AAG-AA-GAAAAGGAGAAGAGAAGAAAAAAGAAAGAAAG
1 AAGGAAAGAAAGGGAAAGGAGAAGAGAA-AAAAAAGAAAGAAAG
*
14636189 AAGGAAAGAAAGGGAAAGGAGAAGAGAAAAAAAAGAAAAAGAAG
1 AAGGAAAGAAAGGGAAAGGAGAAGAGAAAAAAAAGAAAGA-AAG
*
14636233 -AGGGAAGAAAGG
1 AAGGAAAGAAAGG
14636245 AAAAAAAAGG
Statistics
Matches: 115, Mismatches: 13, Indels: 18
0.79 0.09 0.12
Matches are distributed among these distances:
39 3 0.03
40 40 0.35
41 13 0.11
42 6 0.05
43 31 0.27
44 22 0.19
ACGTcount: A:0.65, C:0.00, G:0.35, T:0.00
Consensus pattern (43 bp):
AAGGAAAGAAAGGGAAAGGAGAAGAGAAAAAAAAGAAAGAAAG
Found at i:14636205 original size:22 final size:20
Alignment explanation
Indices: 14636067--14636200 Score: 104
Period size: 18 Copynumber: 6.6 Consensus size: 20
14636057 AAGAGAAAAA
*
14636067 AAGGAAAGAAAGAAAG-GAG
1 AAGGAAAGAAAGAAAGAAAG
14636086 -AGGAAAGAAAGAAAGAAAGG
1 AAGGAAAGAAAGAAAGAAA-G
14636106 AGAGGAAAGAAAGAAAGGAGAGGAG
1 A-AGGAAAGAAAGAAA-GA-A--AG
14636131 AAGAGAAA-AAAGGAAAGAAAG
1 AAG-GAAAGAAA-GAAAGAAAG
*
14636152 AA-G-AAGAAA-AGGAGAAGAG
1 AAGGAAAGAAAGA-AAGAA-AG
14636171 AA-GAAA-AAAGAAAGAAAG
1 AAGGAAAGAAAGAAAGAAAG
14636189 AAGGAAAGAAAG
1 AAGGAAAGAAAG
14636201 GGAAAGGAGA
Statistics
Matches: 95, Mismatches: 3, Indels: 33
0.73 0.02 0.25
Matches are distributed among these distances:
17 1 0.01
18 25 0.26
19 21 0.22
20 8 0.08
21 4 0.04
22 14 0.15
23 3 0.03
24 8 0.08
25 10 0.11
26 1 0.01
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (20 bp):
AAGGAAAGAAAGAAAGAAAG
Found at i:14636217 original size:22 final size:21
Alignment explanation
Indices: 14636070--14636247 Score: 103
Period size: 22 Copynumber: 8.6 Consensus size: 21
14636060 AGAAAAAAAG
*
14636070 GAAAGAAA-GAAAGGAGAGGAAA
1 GAAAGAAAGGAAAGGAGA--AGA
*
14636092 GAAAGAAA-GAAAGGAGAGGAAA
1 GAAAGAAAGGAAAGGAGA--AGA
*
14636114 GAAAGAAAGGAGAGGAGAAGA
1 GAAAGAAAGGAAAGGAGAAGA
14636135 GAAA-AAAGGAAA-GA-AAGA
1 GAAAGAAAGGAAAGGAGAAGA
14636153 -AGAAGAAAAGGAGAA-GAG-A-A
1 GA-AAG-AAAGGA-AAGGAGAAGA
*
14636173 GAAA-AAA-GAAAGAAAGAAG-
1 GAAAGAAAGGAAAG-GAGAAGA
14636192 GAAAGAAAGGGAAAGGAGAAGA
1 GAAAGAAA-GGAAAGGAGAAGA
* * *
14636214 GAAAAAAAAGAAA-AAGAAGA
1 GAAAGAAAGGAAAGGAGAAGA
*
14636234 GGGAAGAAAGGAAA
1 -GAAAGAAAGGAAA
14636248 AAAAAGGGAA
Statistics
Matches: 129, Mismatches: 11, Indels: 33
0.75 0.06 0.19
Matches are distributed among these distances:
16 2 0.02
17 3 0.02
18 11 0.09
19 7 0.05
20 25 0.19
21 31 0.24
22 42 0.33
23 8 0.06
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (21 bp):
GAAAGAAAGGAAAGGAGAAGA
Found at i:14636229 original size:23 final size:23
Alignment explanation
Indices: 14636137--14636229 Score: 74
Period size: 23 Copynumber: 4.3 Consensus size: 23
14636127 GGAGAAGAGA
* *
14636137 AAAAAGGA-AAGA-AAGAAGAAG
1 AAAAAGGAGAAGAGAAAAAAAAG
14636158 -AAAAGGAGAAGAGAAGAAAAAAG
1 AAAAAGGAGAAGAGAA-AAAAAAG
*
14636181 AAAGAA--AGAAG-G-AAAGAAAG
1 AAA-AAGGAGAAGAGAAAAAAAAG
**
14636201 GGAAAGGAGAAGAGAAAAAAAAG
1 AAAAAGGAGAAGAGAAAAAAAAG
14636224 AAAAAG
1 AAAAAG
14636230 AAGAGGGAAG
Statistics
Matches: 55, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
19 2 0.04
20 14 0.25
21 10 0.18
22 4 0.07
23 21 0.38
24 2 0.04
25 2 0.04
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (23 bp):
AAAAAGGAGAAGAGAAAAAAAAG
Found at i:14636257 original size:19 final size:21
Alignment explanation
Indices: 14636164--14636263 Score: 66
Period size: 21 Copynumber: 4.8 Consensus size: 21
14636154 GAAGAAAAGG
* *
14636164 AGAAGAGAAGAAAAAA-GAAAG
1 AGAAGAG-GGAAAAAAGGAAAA
* *
14636185 A-AAGAAGGAAAGAAAGGGAAAGG
1 AGAAGAGGGAAA-AAA-GGAAA-A
* *
14636208 AGAAGA-GAAAAAAAAGAAAA
1 AGAAGAGGGAAAAAAGGAAAA
*
14636228 AGAAGAGGGAAGAAAGGAAAA
1 AGAAGAGGGAAAAAAGGAAAA
14636249 A-AA-AGGGAAAAAAGG
1 AGAAGAGGGAAAAAAGG
14636264 TAATTTTATT
Statistics
Matches: 64, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
19 15 0.23
20 15 0.23
21 17 0.27
22 7 0.11
23 6 0.09
24 4 0.06
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (21 bp):
AGAAGAGGGAAAAAAGGAAAA
Found at i:14636259 original size:82 final size:83
Alignment explanation
Indices: 14636086--14636262 Score: 195
Period size: 82 Copynumber: 2.1 Consensus size: 83
14636076 AAGAAAGGAG
* * *
14636086 AGGAAAGAAAGAAAGAAAGGAGAGGAAAGAAAGAAAGGAGAGGAGAAGAGAAAAAAGGAAAGAAA
1 AGGAAA-AAAGAAAGAAAGGAGAGGAAAGAAAG--AGGAAAGGAGAAGAGAAAAAAAGAAAAAAA
* *
14636151 GAAGAAGAAAAGGAGAAGAGA
63 GAAGAAGAAAAGGAGAAAAAA
14636172 A-GAAAAAAGAAAGAAA-GA-AGGAAAGAAAG-GGAAAGGAGAAGAGAAAAAAAAGAAAAAGAAG
1 AGGAAAAAAGAAAGAAAGGAGAGGAAAGAAAGAGGAAAGGAGAAGAG-AAAAAAAGAAAAA-AAG
*
14636233 AGGGAAG-AAAGGA-AAAAAA
64 A-AGAAGAAAAGGAGAAAAAA
14636252 AGGGAAAAAAG
1 A-GGAAAAAAG
14636263 GTAATTTTAT
Statistics
Matches: 80, Mismatches: 6, Indels: 14
0.80 0.06 0.14
Matches are distributed among these distances:
79 13 0.16
80 16 0.20
81 10 0.12
82 23 0.29
83 2 0.03
84 11 0.14
85 4 0.05
86 1 0.01
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (83 bp):
AGGAAAAAAGAAAGAAAGGAGAGGAAAGAAAGAGGAAAGGAGAAGAGAAAAAAAGAAAAAAAGAA
GAAGAAAAGGAGAAAAAA
Found at i:14636289 original size:19 final size:20
Alignment explanation
Indices: 14636265--14636303 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 20
14636255 GAAAAAAGGT
14636265 AATTTTATTTATAA-ATTTG
1 AATTTTATTTATAATATTTG
* *
14636284 AATTTTTTTTGTAATATTTG
1 AATTTTATTTATAATATTTG
14636304 TGTGTTTAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (20 bp):
AATTTTATTTATAATATTTG
Found at i:14640497 original size:26 final size:26
Alignment explanation
Indices: 14640448--14640500 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14640438 ACACACTAAA
* *
14640448 ATTATTAATTTTATACTACGAATAAT
1 ATTAATAATTTTATACTACAAATAAT
14640474 ATTAATAATTTTATACT-CAAAATAAT
1 ATTAATAATTTTATACTAC-AAATAAT
14640500 A
1 A
14640501 CACACTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.47, C:0.08, G:0.02, T:0.43
Consensus pattern (26 bp):
ATTAATAATTTTATACTACAAATAAT
Found at i:14640684 original size:3 final size:3
Alignment explanation
Indices: 14640676--14640710 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
14640666 TCTTCATACT
14640676 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
14640711 TAATAATACT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.31, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:14640798 original size:19 final size:21
Alignment explanation
Indices: 14640774--14640812 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
14640764 ACTACAACAA
*
14640774 AAAAT-ATTACAA-AATATAC
1 AAAATAATAACAATAATATAC
14640793 AAAATAATAACAATAATATA
1 AAAATAATAACAATAATATA
14640813 ATCAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 6 0.35
21 6 0.35
ACGTcount: A:0.67, C:0.08, G:0.00, T:0.26
Consensus pattern (21 bp):
AAAATAATAACAATAATATAC
Found at i:14640893 original size:26 final size:25
Alignment explanation
Indices: 14640872--14640922 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
14640862 AACTCTTCTT
14640872 TTTTTTTTTGAATTTTCTCTCTTCAG
1 TTTTTTTTT-AATTTTCTCTCTTCAG
*
14640898 TTTTTTTTTATTTTTCTCTCTTCAG
1 TTTTTTTTTAATTTTCTCTCTTCAG
14640923 CTGGGTAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 15 0.62
26 9 0.38
ACGTcount: A:0.10, C:0.16, G:0.06, T:0.69
Consensus pattern (25 bp):
TTTTTTTTTAATTTTCTCTCTTCAG
Found at i:14640990 original size:27 final size:27
Alignment explanation
Indices: 14640952--14641054 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
14640942 ATAATACGAG
14640952 TGGTGCCGCCAATGGCATTGGCACCAT
1 TGGTGCCGCCAATGGCATTGGCACCAT
*
14640979 TGGTGCCGCCAATGGTATTGGCACCAT
1 TGGTGCCGCCAATGGCATTGGCACCAT
* *** *
14641006 TGGTGCCACCAATGATTTTGGCACCTT
1 TGGTGCCGCCAATGGCATTGGCACCAT
**
14641033 TGGTGCCGCCAATACCATTGGC
1 TGGTGCCGCCAATGGCATTGGC
14641055 GTGACTAGTA
Statistics
Matches: 66, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 66 1.00
ACGTcount: A:0.18, C:0.28, G:0.27, T:0.26
Consensus pattern (27 bp):
TGGTGCCGCCAATGGCATTGGCACCAT
Found at i:14641189 original size:25 final size:26
Alignment explanation
Indices: 14641132--14641217 Score: 102
Period size: 28 Copynumber: 3.1 Consensus size: 26
14641122 TTTGATAAAT
*
14641132 AATAAAAAAGTT-TATATATTTTGATA
1 AATAAAAAAGTTGTA-ATATTTTGGTA
14641158 AATAAATAAAAAGTTGTAATATTTTGGTA
1 AAT--A-AAAAAGTTGTAATATTTTGGTA
14641187 AATAAAAAAAAGTTGTAATATTTTGGTA
1 AAT--AAAAAAGTTGTAATATTTTGGTA
14641215 AAT
1 AAT
14641218 TTTTATTTTT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
26 3 0.05
28 26 0.47
29 24 0.44
30 2 0.04
ACGTcount: A:0.50, C:0.00, G:0.12, T:0.38
Consensus pattern (26 bp):
AATAAAAAAGTTGTAATATTTTGGTA
Found at i:14641205 original size:28 final size:28
Alignment explanation
Indices: 14641118--14641217 Score: 148
Period size: 29 Copynumber: 3.5 Consensus size: 28
14641108 GTTTTTTTAT
14641118 ATATTTTGATAAATAATAAAAAAGTT-TA
1 ATATTTTGATAAATAA-AAAAAAGTTGTA
14641146 TATATTTTGATAAATAAATAAAAAGTTGTA
1 -ATATTTTGATAAATAAA-AAAAAGTTGTA
*
14641176 ATATTTTGGTAAATAAAAAAAAGTTGTA
1 ATATTTTGATAAATAAAAAAAAGTTGTA
*
14641204 ATATTTTGGTAAAT
1 ATATTTTGATAAAT
14641218 TTTTATTTTT
Statistics
Matches: 68, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
28 26 0.38
29 40 0.59
30 2 0.03
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (28 bp):
ATATTTTGATAAATAAAAAAAAGTTGTA
Found at i:14641461 original size:17 final size:17
Alignment explanation
Indices: 14641439--14641482 Score: 67
Period size: 17 Copynumber: 2.8 Consensus size: 17
14641429 TATTTTTTTA
14641439 TATAAAATAATTTATTT
1 TATAAAATAATTTATTT
14641456 TATAAAATAA-TTATTT
1 TATAAAATAATTTATTT
14641472 T-TAAAA-AATTT
1 TATAAAATAATTT
14641483 TGCAGATTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
14 2 0.08
15 7 0.27
16 7 0.27
17 10 0.38
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TATAAAATAATTTATTT
Found at i:14655358 original size:16 final size:17
Alignment explanation
Indices: 14655319--14655362 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
14655309 TTAAATTAAG
*
14655319 ATTTATTTTTTAATTTA
1 ATTTATTATTTAATTTA
*
14655336 ATGTATTATTT-ATTTA
1 ATTTATTATTTAATTTA
*
14655352 TTTTATTATTT
1 ATTTATTATTT
14655363 TCCACATGTA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
16 14 0.61
17 9 0.39
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (17 bp):
ATTTATTATTTAATTTA
Found at i:14657627 original size:16 final size:17
Alignment explanation
Indices: 14657598--14657630 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14657588 ACTGGAAATG
14657598 AAAAGAGAATTTGAAAA
1 AAAAGAGAATTTGAAAA
*
14657615 AAAATAGAA-TTGAAAA
1 AAAAGAGAATTTGAAAA
14657631 CGATTTAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.67, C:0.00, G:0.15, T:0.18
Consensus pattern (17 bp):
AAAAGAGAATTTGAAAA
Found at i:14666668 original size:5 final size:5
Alignment explanation
Indices: 14666658--14666726 Score: 77
Period size: 5 Copynumber: 13.8 Consensus size: 5
14666648 TAGGACTTTG
* *
14666658 TATGA TATGA TATGA TATGA TATGA TATGA TATGA -ATCGA TATGA CATGC
1 TATGA TATGA TATGA TATGA TATGA TATGA TATGA TAT-GA TATGA TATGA
* * *
14666708 TCTGG TATGA TAAGA TATG
1 TATGA TATGA TATGA TATG
14666727 TTCTAATATA
Statistics
Matches: 53, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
4 2 0.04
5 49 0.92
6 2 0.04
ACGTcount: A:0.36, C:0.06, G:0.22, T:0.36
Consensus pattern (5 bp):
TATGA
Found at i:14667025 original size:18 final size:19
Alignment explanation
Indices: 14667004--14667039 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
14666994 ATTTTTGTAA
14667004 CTGTATTTT-GTTTTTGGG
1 CTGTATTTTGGTTTTTGGG
*
14667022 CTGTGTTTTGGTTTTTGG
1 CTGTATTTTGGTTTTTGG
14667040 TTTTTGCTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.03, C:0.06, G:0.31, T:0.61
Consensus pattern (19 bp):
CTGTATTTTGGTTTTTGGG
Found at i:14669563 original size:50 final size:50
Alignment explanation
Indices: 14669460--14669698 Score: 250
Period size: 50 Copynumber: 4.7 Consensus size: 50
14669450 AAAGAGATCT
14669460 CATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTGAGATCATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAG---ATGAGAGGTCC
*
14669516 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
** * * ** *
14669566 CCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
* * * * **
14669616 CATGTAAGACCATATCTGGGATATGGCATTGGCA--GTACATGAAACATCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAGGTCC
*
14669665 CATGTAAGACCATGTATGGGACATGG-ATTTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCA-TTGGCA
14669699 TGTTATTATC
Statistics
Matches: 159, Mismatches: 22, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
48 2 0.01
49 37 0.23
50 82 0.52
53 3 0.02
55 2 0.01
56 33 0.21
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
Found at i:14677119 original size:50 final size:50
Alignment explanation
Indices: 14677016--14677247 Score: 216
Period size: 50 Copynumber: 4.5 Consensus size: 50
14677006 AAAGAGATCT
* *
14677016 CATGTAAGACCATGTCTGGGACATGTCATTGGCATCCTTGAGATCATGAGAGGTTC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAG---ATGAGAGGTCC
* * *
14677072 CATGTAAGATCATGCCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
** * * * **
14677122 CCCGTAAGACCATGTTTGGGACATGGCATGGGCACCGATATGAGAACTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
* * * * **
14677172 CATGTAAGACCATATCTGGGATATGGCATTGGCA--GTACATGAAACATCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAGGTCC
*
14677221 CATGTAAGACCATGTATGGGACATGGC
1 CATGTAAGACCATGTCTGGGACATGGC
14677248 TTTGACATGT
Statistics
Matches: 147, Mismatches: 28, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
48 1 0.01
49 33 0.22
50 78 0.53
53 3 0.02
55 2 0.01
56 30 0.20
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.23
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCC
Found at i:14700118 original size:38 final size:38
Alignment explanation
Indices: 14700035--14700122 Score: 104
Period size: 38 Copynumber: 2.3 Consensus size: 38
14700025 TTTTGTCTGC
*
14700035 TTATATTGGAGTGTAGGATGGAGCACTACAATGCATAT
1 TTATATTGGAGTGTAGGATGGAGCACTACAATGCAAAT
* * * *** *
14700073 TTCTATTGGATTGTAGGTTGGAGCACTATGGTGTAAAT
1 TTATATTGGAGTGTAGGATGGAGCACTACAATGCAAAT
14700111 TTATATTGGAGT
1 TTATATTGGAGT
14700123 AATGAATGTA
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
38 40 1.00
ACGTcount: A:0.27, C:0.08, G:0.27, T:0.38
Consensus pattern (38 bp):
TTATATTGGAGTGTAGGATGGAGCACTACAATGCAAAT
Found at i:14702042 original size:61 final size:60
Alignment explanation
Indices: 14701883--14702083 Score: 185
Period size: 60 Copynumber: 3.3 Consensus size: 60
14701873 AGGAAAAAGC
* * * * *
14701883 CTTTGTGGCAATCT-TGGTCAAAGGAAAGCCTTTATGGCAAGTACTGAATGTAAATGACAGA
1 CTTTGTGGCAAACTCTGGAC-AA-GAAAGCCTTTATGGCGAGTACTGAATGTAAAGGATAGA
* * * *
14701944 C-TTGTGGCAAATCTTTAGACAAGAAAGCCTTTGTGGCGAGTACTGAATGTAAAGGATAGC
1 CTTTGTGGCAAA-CTCTGGACAAGAAAGCCTTTATGGCGAGTACTGAATGTAAAGGATAGA
* * * * * *
14702004 CTTTCTGGCACAACTCTGGACATGAAATCCTTTATGGCGAGTATTGGATGT-AAGAGAT-GT
1 CTTTGTGGCA-AACTCTGGACAAGAAAGCCTTTATGGCGAGTACTGAATGTAAAG-GATAGA
14702064 CTTTGTGGCAAAACTCTGGA
1 CTTTGTGGC-AAACTCTGGA
14702084 AATGTAAGCC
Statistics
Matches: 116, Mismatches: 18, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
60 64 0.55
61 47 0.41
62 5 0.04
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.29
Consensus pattern (60 bp):
CTTTGTGGCAAACTCTGGACAAGAAAGCCTTTATGGCGAGTACTGAATGTAAAGGATAGA
Found at i:14702102 original size:60 final size:61
Alignment explanation
Indices: 14701906--14702103 Score: 179
Period size: 60 Copynumber: 3.3 Consensus size: 61
14701896 TTGGTCAAAG
* * * * * * * * *
14701906 GAAAGCCTTTATGGCAAGTACTGAATGTAAATGACAGAC-TTGTGGCAAATCTTTAGACAA-
1 GAAAGCCTTTGTGGCGAGTACTGAATGTAAAGGATAGCCTTTCTGGCAAAACTCTGGA-AAT
* *
14701966 GAAAGCCTTTGTGGCGAGTACTGAATGTAAAGGATAGCCTTTCTGGCACAACTCTGGACAT
1 GAAAGCCTTTGTGGCGAGTACTGAATGTAAAGGATAGCCTTTCTGGCAAAACTCTGGAAAT
* * * * * *
14702027 GAAATCCTTTATGGCGAGTATTGGATGT-AAGAGAT-GTCTTTGTGGCAAAACTCTGGAAAT
1 GAAAGCCTTTGTGGCGAGTACTGAATGTAAAG-GATAGCCTTTCTGGCAAAACTCTGGAAAT
* *
14702087 GTAAGCCTTCGTGGCGA
1 GAAAGCCTTTGTGGCGA
14702104 ACTTCTTGAA
Statistics
Matches: 112, Mismatches: 23, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
60 72 0.64
61 40 0.36
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (61 bp):
GAAAGCCTTTGTGGCGAGTACTGAATGTAAAGGATAGCCTTTCTGGCAAAACTCTGGAAAT
Found at i:14704843 original size:5 final size:5
Alignment explanation
Indices: 14704833--14704859 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
14704823 TAAATTATGG
14704833 ATTGA ATTGA ATTGA ATTGA ATTGA AT
1 ATTGA ATTGA ATTGA ATTGA ATTGA AT
14704860 AAAAGAAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (5 bp):
ATTGA
Found at i:14720599 original size:59 final size:58
Alignment explanation
Indices: 14720534--14720721 Score: 157
Period size: 59 Copynumber: 3.2 Consensus size: 58
14720524 ATTTTATTAA
14720534 ATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAATA-TAATTATATT-AAATTATATTTTATAGT
* * ** * * * ** * * *
14720593 ATCATATATTATGATTTTAGTA-AATTCATATAAGAATATTGATTATTAGAATTTTATTA-A
1 ATCATATATTTTAATTAAAATATATTTAATATAATTATATT-A-AATTA-TATTTTA-TAGT
* * *
14720653 ATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTTATAGT
1 ATCATATATTTTAATTAAAATATATTTAAT-ATAATTATATTAAATTATATTTTATAGT
14720712 ATCATATATT
1 ATCATATATT
14720722 ATGATTTGAG
Statistics
Matches: 93, Mismatches: 29, Indels: 14
0.68 0.21 0.10
Matches are distributed among these distances:
57 5 0.05
58 11 0.12
59 35 0.38
60 26 0.28
61 8 0.09
62 8 0.09
ACGTcount: A:0.42, C:0.03, G:0.04, T:0.51
Consensus pattern (58 bp):
ATCATATATTTTAATTAAAATATATTTAATATAATTATATTAAATTATATTTTATAGT
Found at i:14720648 original size:119 final size:120
Alignment explanation
Indices: 14720523--14720819 Score: 499
Period size: 119 Copynumber: 2.5 Consensus size: 120
14720513 AATTATTTTA
* *
14720523 AATTTTATTAAATCATATATTTTAATTAAAATATATTTAATATTAATTAT-TTCAAATTATATTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT-AAATTATATTT
* *
14720587 TATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATT-AG
65 TATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGACTATTAAG
*
14720642 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATCTTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
14720707 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGACTATTAAG
66 ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGACTATTAAG
* *
14720762 AATTTTATTAAATTATATATTTTAATTATAATATATTTAATAATAATCATGTTTAAAT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG-TTAAAT
14720820 ATGATTAAAT
Statistics
Matches: 168, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
119 109 0.65
120 53 0.32
121 6 0.04
ACGTcount: A:0.43, C:0.03, G:0.05, T:0.49
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAAATTATATTTT
ATAGTATCATATATTATGATTTGAGTAAATTCATATAAGAATATTGACTATTAAG
Found at i:14720669 original size:18 final size:17
Alignment explanation
Indices: 14720643--14720677 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
14720633 GATTATTAGA
*
14720643 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
14720660 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
14720678 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:14720779 original size:59 final size:58
Alignment explanation
Indices: 14720597--14720779 Score: 139
Period size: 63 Copynumber: 3.1 Consensus size: 58
14720587 TATAGTATCA
*
14720597 TATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATT-AGAATTTTATTAAAT
1 TATATTATGATTTAAGTAAATTCATATAAGAATATTGA-TATTAAGAATTTTATTAAAT
* * * * *
14720655 TATA-TAT--TTTAATTAAAATAT-ATTTAATAATAATT-ATGTTAA-ATTATCTTT-TATAGTA
1 TATATTATGATTTAAGT-AAAT-TCATATAAGAAT-ATTGATATTAAGA--AT-TTTAT-TA-AA
14720713 T
58 T
*
14720714 CATATATTATGATTTGAGTAAATTCATATAAGAATATTGACTATTAAGAATTTTATTAAAT
1 --TATATTATGATTTAAGTAAATTCATATAAGAATATTGA-TATTAAGAATTTTATTAAAT
14720775 TATAT
1 TATAT
14720780 ATTTTAATTA
Statistics
Matches: 94, Mismatches: 12, Indels: 37
0.66 0.08 0.26
Matches are distributed among these distances:
55 9 0.10
56 14 0.15
57 10 0.11
58 9 0.10
59 7 0.07
61 6 0.06
62 12 0.13
63 16 0.17
64 10 0.11
65 1 0.01
ACGTcount: A:0.42, C:0.03, G:0.07, T:0.48
Consensus pattern (58 bp):
TATATTATGATTTAAGTAAATTCATATAAGAATATTGATATTAAGAATTTTATTAAAT
Found at i:14720802 original size:15 final size:15
Alignment explanation
Indices: 14720767--14720808 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
14720757 TTAAGAATTT
*
14720767 TATTAAATTAT-ATA
1 TATTTAATTATAATA
14720781 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
14720795 TATTTAATAATAAT
1 TATTTAATTATAAT
14720809 CATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:14721042 original size:45 final size:44
Alignment explanation
Indices: 14720962--14721051 Score: 137
Period size: 45 Copynumber: 2.0 Consensus size: 44
14720952 ACCTCTATTC
14720962 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
* *
14721006 CATTCAACCAAACA-ATTGATTTGCTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACA-AGA-TTACTATTACGCCTCTATTCCATTA
14721051 C
1 C
14721052 GCCTCTAATC
Statistics
Matches: 42, Mismatches: 2, Indels: 3
0.89 0.04 0.06
Matches are distributed among these distances:
43 1 0.02
44 16 0.38
45 25 0.60
ACGTcount: A:0.33, C:0.29, G:0.06, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
Found at i:14721095 original size:16 final size:16
Alignment explanation
Indices: 14721031--14721087 Score: 105
Period size: 16 Copynumber: 3.6 Consensus size: 16
14721021 TTGATTTGCT
*
14721031 ATTACGCCTCTATTCC
1 ATTACGCCTCTAATCC
14721047 ATTACGCCTCTAATCC
1 ATTACGCCTCTAATCC
14721063 ATTACGCCTCTAATCC
1 ATTACGCCTCTAATCC
14721079 ATTACGCCT
1 ATTACGCCT
14721088 ATATTCCAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
16 40 1.00
ACGTcount: A:0.23, C:0.37, G:0.07, T:0.33
Consensus pattern (16 bp):
ATTACGCCTCTAATCC
Found at i:14721777 original size:90 final size:91
Alignment explanation
Indices: 14721615--14721794 Score: 335
Period size: 90 Copynumber: 2.0 Consensus size: 91
14721605 AGAGGACACG
*
14721615 AATAGCCTCGTCCCCCGCACAATTTCTATGCAAATGCCCACTTATATAAAATTTATTAGAATCAC
1 AATAGCCCCGTCCCCCGCACAATTTCTATGCAAATGCCCACTTATATAAAATTTATTAGAATCAC
14721680 CATTGCACTTTCCAACAACGAGCAAC
66 CATTGCACTTTCCAACAACGAGCAAC
*
14721706 AATAGCCCCGTCCCCCGCGCAATTTCTATGCAAATG-CCACTTATATAAAATTTATTAGAATCAC
1 AATAGCCCCGTCCCCCGCACAATTTCTATGCAAATGCCCACTTATATAAAATTTATTAGAATCAC
14721770 CATTGCACTTTCCAACAACGAGCAA
66 CATTGCACTTTCCAACAACGAGCAA
14721795 AACCTATACC
Statistics
Matches: 87, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
90 53 0.61
91 34 0.39
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (91 bp):
AATAGCCCCGTCCCCCGCACAATTTCTATGCAAATGCCCACTTATATAAAATTTATTAGAATCAC
CATTGCACTTTCCAACAACGAGCAAC
Found at i:14725532 original size:19 final size:19
Alignment explanation
Indices: 14725500--14725564 Score: 121
Period size: 19 Copynumber: 3.4 Consensus size: 19
14725490 CAACAAAATC
14725500 TATCGATACTTGACAAAAAG
1 TATCGAT-CTTGACAAAAAG
14725520 TATCGATCTTGACAAAAAG
1 TATCGATCTTGACAAAAAG
14725539 TATCGATCTTGACAAAAAG
1 TATCGATCTTGACAAAAAG
14725558 TATCGAT
1 TATCGAT
14725565 ATTGGATCGA
Statistics
Matches: 45, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
19 38 0.84
20 7 0.16
ACGTcount: A:0.42, C:0.15, G:0.15, T:0.28
Consensus pattern (19 bp):
TATCGATCTTGACAAAAAG
Found at i:14728312 original size:10 final size:11
Alignment explanation
Indices: 14728288--14728317 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
14728278 TTTAGGTCAT
14728288 AAAACATTTTA
1 AAAACATTTTA
14728299 AAAACATTTTA
1 AAAACATTTTA
14728310 AAAACATT
1 AAAACATT
14728318 CAAGTGCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.57, C:0.10, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAACATTTTA
Found at i:14730464 original size:27 final size:27
Alignment explanation
Indices: 14730418--14730473 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
14730408 ACCCTATTTC
* * *
14730418 TACTGTCTCGATGGAATACCTCGTGTT
1 TACTGTCCCGATGGAATACCCCATGTT
14730445 TACTGTCCCGAT-GAACTACCCCATGTT
1 TACTGTCCCGATGGAA-TACCCCATGTT
14730472 TA
1 TA
14730474 TTGCCTAGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 3 0.12
27 22 0.88
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.34
Consensus pattern (27 bp):
TACTGTCCCGATGGAATACCCCATGTT
Found at i:14736663 original size:20 final size:20
Alignment explanation
Indices: 14736640--14736677 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
14736630 TCAATAATTA
*
14736640 ACAAAAACTATTGATACTTG
1 ACAAAAACTATCGATACTTG
*
14736660 ACAAAAAGTATCGATACT
1 ACAAAAACTATCGATACT
14736678 GGATCAATAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.47, C:0.16, G:0.11, T:0.26
Consensus pattern (20 bp):
ACAAAAACTATCGATACTTG
Found at i:14738190 original size:9 final size:9
Alignment explanation
Indices: 14738176--14738203 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
14738166 TATAATTTGA
14738176 TATTCGAAT
1 TATTCGAAT
14738185 TATTCGAAT
1 TATTCGAAT
14738194 TATTCGAAT
1 TATTCGAAT
14738203 T
1 T
14738204 TGAAAACTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:14738770 original size:3 final size:3
Alignment explanation
Indices: 14738756--14738873 Score: 209
Period size: 3 Copynumber: 39.3 Consensus size: 3
14738746 AATTTCCCTC
* * *
14738756 TCT TCC TCT TCT TCT TCT TCT TAT TCT TCT TCT TCT TTT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
14738804 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
14738852 TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT T
14738874 TCCCAACAAA
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 109 1.00
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.67
Consensus pattern (3 bp):
TCT
Found at i:14738928 original size:44 final size:44
Alignment explanation
Indices: 14738847--14738938 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 44
14738837 TCTTCTTCTT
* *
14738847 CTTCTTCTTCTTCTTCTTCTTCTTCTTTCCCAACAAAATTTAGC
1 CTTCTTCTTCTTCTTCTTCTTCTCCCTTCCCAACAAAATTTAGC
* * *
14738891 CTTCTTCTTTTTCTTCTTGTT-TCCCTTCCCTAGCAAAATTTAGC
1 CTTCTTCTTCTTCTTCTTCTTCTCCCTTCCC-AACAAAATTTAGC
14738935 CTTC
1 CTTC
14738939 ATCGATCGCC
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 7 0.17
44 35 0.83
ACGTcount: A:0.14, C:0.32, G:0.04, T:0.50
Consensus pattern (44 bp):
CTTCTTCTTCTTCTTCTTCTTCTCCCTTCCCAACAAAATTTAGC
Found at i:14742677 original size:105 final size:105
Alignment explanation
Indices: 14742473--14742670 Score: 333
Period size: 105 Copynumber: 1.9 Consensus size: 105
14742463 TGTCCACCGT
* *
14742473 GCTTTCTCATTTTACGAGTCAACTCAAGGATTGGAATAAAAAGGTATATGGTCACGTCGAGGCTC
1 GCTTTCTCATTTTACGAGTCAACTCAAAGATTGGAATAAAAAGGTATATGGTCACATCGAGGCTC
14742538 TTAAAAGAATACTGATTCAGAAGCTCACACATATTCAGAA
66 TTAAAAGAATACTGATTCAGAAGCTCACACATATTCAGAA
* *
14742578 GCTTTCTCATTTTACGAGTTAACTCAAAGATTGGAATAAGAAGGTATATGGTCACATCGAGGCTC
1 GCTTTCTCATTTTACGAGTCAACTCAAAGATTGGAATAAAAAGGTATATGGTCACATCGAGGCTC
** *
14742643 TTAAAAGAATGTTGATTTAGAAGCTCAC
66 TTAAAAGAATACTGATTCAGAAGCTCAC
14742671 TAATATTAAA
Statistics
Matches: 86, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
105 86 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (105 bp):
GCTTTCTCATTTTACGAGTCAACTCAAAGATTGGAATAAAAAGGTATATGGTCACATCGAGGCTC
TTAAAAGAATACTGATTCAGAAGCTCACACATATTCAGAA
Found at i:14749140 original size:32 final size:32
Alignment explanation
Indices: 14749104--14749169 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
14749094 AAACAAAACC
14749104 AATATTTCAACCATATTTGAGTAATCAAATTA
1 AATATTTCAACCATATTTGAGTAATCAAATTA
*
14749136 AATATTTCAACCATATTTGAGTAATTAAATTA
1 AATATTTCAACCATATTTGAGTAATCAAATTA
14749168 AA
1 AA
14749170 AATACAAAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.45, C:0.11, G:0.06, T:0.38
Consensus pattern (32 bp):
AATATTTCAACCATATTTGAGTAATCAAATTA
Found at i:14750097 original size:24 final size:25
Alignment explanation
Indices: 14750070--14750123 Score: 60
Period size: 24 Copynumber: 2.2 Consensus size: 25
14750060 ATTTTTTTAA
*
14750070 TTTTATAA-TATTT-TAATTTAATTT
1 TTTTATAATTATTTAT-ATATAATTT
*
14750094 TTTT-GAATTATTTATATATAATTT
1 TTTTATAATTATTTATATATAATTT
14750118 TTTTAT
1 TTTTAT
14750124 CTTTTTAACC
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
23 2 0.08
24 21 0.88
25 1 0.04
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (25 bp):
TTTTATAATTATTTATATATAATTT
Found at i:14750104 original size:29 final size:28
Alignment explanation
Indices: 14750040--14750104 Score: 64
Period size: 29 Copynumber: 2.3 Consensus size: 28
14750030 TATATTATTA
14750040 TGAATT-TAAAATTTGTATTTATTTTTT
1 TGAATTATAAAATTTGTATTTATTTTTT
*
14750067 T-AATTTTATAATATTT-TAATTTAATTTTTT
1 TGAA--TTATAAAATTTGT-ATTT-ATTTTTT
14750097 TGAATTAT
1 TGAATTAT
14750105 TTATATATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 10
0.74 0.02 0.24
Matches are distributed among these distances:
26 2 0.06
27 1 0.03
28 3 0.10
29 15 0.48
30 8 0.26
31 2 0.06
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (28 bp):
TGAATTATAAAATTTGTATTTATTTTTT
Found at i:14755718 original size:25 final size:25
Alignment explanation
Indices: 14755662--14755718 Score: 60
Period size: 25 Copynumber: 2.3 Consensus size: 25
14755652 CAAGGGCCAA
* *
14755662 ACAAAATACGCTATAAAGGCTTCAC
1 ACAAAATACGCCATAAAGGCATCAC
* * * *
14755687 ACGAAATATGCCATAGAGGCATCAT
1 ACAAAATACGCCATAAAGGCATCAC
14755712 ACAAAAT
1 ACAAAAT
14755719 CTCGTGCTTA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.46, C:0.21, G:0.14, T:0.19
Consensus pattern (25 bp):
ACAAAATACGCCATAAAGGCATCAC
Found at i:14759239 original size:241 final size:241
Alignment explanation
Indices: 14758816--14759298 Score: 804
Period size: 241 Copynumber: 2.0 Consensus size: 241
14758806 TTAGTCATAT
** *
14758816 TTTGGGCAAATTGTCCCTTATGTTATGATTTTCACTAGCCAAGGTTACAACATTGGGCAATTCTG
1 TTTGGGCAAATTGTCCCTTATGTTACAATATTCACTAGCCAAGGTTACAACATTGGGCAATTCTG
* * * * *
14758881 GTATCAATTTCGCGATACCACTAGCGGTTGTTGTGACCTTGGGGTATTCTACCACTAATGTTTTG
66 GTATCAATGTCACAATACCACTAGCGATTGTTGTGACCTTGGGGTATTCTACCACCAATGTTTTG
14758946 ACATTCACTTACCAATGTCACAATATTGATCATCTTTACCTAGATTTGCTCCAAAAATGTCCCGA
131 ACATTCACTTACCAATGTCACAATATTGATCATCTTTACCTAGATTTGCTCCAAAAATGTCCCGA
*
14759011 ATGGCCCCCAAATGCAACCCAATTTTAAAGGAAGCTTAGAAATGAC
196 ATGGCCCCCAAATGCAACCAAATTTTAAAGGAAGCTTAGAAATGAC
**
14759057 TTTGGGCAAATTGTCCCTTATGTTACAATATTCACTAGCCAAGGTTACAACATTGGTTAATTCTG
1 TTTGGGCAAATTGTCCCTTATGTTACAATATTCACTAGCCAAGGTTACAACATTGGGCAATTCTG
* * * *
14759122 GTATCAATGTCACAATACCACTAGCGATTTTTGTGGCCTTGGGGTATTCTATCGCCAATGTTTTG
66 GTATCAATGTCACAATACCACTAGCGATTGTTGTGACCTTGGGGTATTCTACCACCAATGTTTTG
* * *
14759187 ACATTCACTTACCAATGTCACAATATTGATCCTCTTTACCTAGGTTTGCTCCAAAAATGTCCTGA
131 ACATTCACTTACCAATGTCACAATATTGATCATCTTTACCTAGATTTGCTCCAAAAATGTCCCGA
14759252 ATGGCCCCCAAATGCAACCAAATTTTAAAGGAAGCTTAGAAATGAC
196 ATGGCCCCCAAATGCAACCAAATTTTAAAGGAAGCTTAGAAATGAC
14759298 T
1 T
14759299 CAAATAACTT
Statistics
Matches: 224, Mismatches: 18, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
241 224 1.00
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.33
Consensus pattern (241 bp):
TTTGGGCAAATTGTCCCTTATGTTACAATATTCACTAGCCAAGGTTACAACATTGGGCAATTCTG
GTATCAATGTCACAATACCACTAGCGATTGTTGTGACCTTGGGGTATTCTACCACCAATGTTTTG
ACATTCACTTACCAATGTCACAATATTGATCATCTTTACCTAGATTTGCTCCAAAAATGTCCCGA
ATGGCCCCCAAATGCAACCAAATTTTAAAGGAAGCTTAGAAATGAC
Found at i:14761047 original size:17 final size:17
Alignment explanation
Indices: 14760990--14761048 Score: 61
Period size: 16 Copynumber: 3.6 Consensus size: 17
14760980 AACAAGAAAG
14760990 AAAGAAATATAAAGT-AA
1 AAAG-AATATAAAGTAAA
* *
14761007 AAAGAGTATATA-TAAA
1 AAAGAATATAAAGTAAA
*
14761023 AAA-TATATAAAGTAAA
1 AAAGAATATAAAGTAAA
14761039 AAAGAATATA
1 AAAGAATATA
14761049 TATATATATA
Statistics
Matches: 33, Mismatches: 6, Indels: 6
0.73 0.13 0.13
Matches are distributed among these distances:
15 6 0.18
16 18 0.55
17 9 0.27
ACGTcount: A:0.68, C:0.00, G:0.10, T:0.22
Consensus pattern (17 bp):
AAAGAATATAAAGTAAA
Found at i:14762778 original size:20 final size:21
Alignment explanation
Indices: 14762749--14762792 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
14762739 TTTATTCCTA
*
14762749 AAATTAAATATTTTAAA-TTTT
1 AAATTAAATA-TGTAAAGTTTT
14762770 AAATT-AATATGTAAAGTTTT
1 AAATTAAATATGTAAAGTTTT
14762790 AAA
1 AAA
14762793 AAATCTAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 5 0.24
20 11 0.52
21 5 0.24
ACGTcount: A:0.50, C:0.00, G:0.05, T:0.45
Consensus pattern (21 bp):
AAATTAAATATGTAAAGTTTT
Found at i:14777688 original size:31 final size:31
Alignment explanation
Indices: 14777650--14777839 Score: 154
Period size: 31 Copynumber: 6.1 Consensus size: 31
14777640 TAGCATCCCC
14777650 AGAGATAGTTCGTTGGGACAGTAAACATAGA
1 AGAGATAGTTCGTTGGGACAGTAAACATAGA
* * * *
14777681 AGAGATAG-TCTGTCGGGATAGTAAACACATA
1 AGAGATAGTTC-GTTGGGACAGTAAACATAGA
* ** **
14777712 AGAGATAACTT-GTTGGGATTGTAAACGCAGA
1 AGAGAT-AGTTCGTTGGGACAGTAAACATAGA
* ** * *
14777743 AGAGATAGTCCACTAGGACAGTAAAGATAGA
1 AGAGATAGTTCGTTGGGACAGTAAACATAGA
*
14777774 AGAGATAG-TCTGTTGGGATAGTAAACATAGA
1 AGAGATAGTTC-GTTGGGACAGTAAACATAGA
** *
14777805 A-AGATAGCCCGTTGGGACTGTAAACATAGA
1 AGAGATAGTTCGTTGGGACAGTAAACATAGA
14777835 TAGAG
1 -AGAG
14777840 TCCAGTGGGA
Statistics
Matches: 123, Mismatches: 28, Indels: 15
0.74 0.17 0.09
Matches are distributed among these distances:
30 29 0.24
31 90 0.73
32 3 0.02
33 1 0.01
ACGTcount: A:0.39, C:0.11, G:0.28, T:0.22
Consensus pattern (31 bp):
AGAGATAGTTCGTTGGGACAGTAAACATAGA
Found at i:14780388 original size:65 final size:65
Alignment explanation
Indices: 14780284--14780414 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
14780274 TAAGGCTTAG
14780284 TAAGTTTGTATAAACAACTTAAATTTATCAAATGCATTAAATTAAAAAACCATGAATAATTCCAT
1 TAAGTTTGTATAAACAACTTAAATTTATCAAATGCATTAAATTAAAAAACCATGAATAATTCCAT
14780349 TAAGTTTGTATAAACAACTTAAATTTATCAAATGCATTAAATTAAAAAACCATGAATAATTCCAT
1 TAAGTTTGTATAAACAACTTAAATTTATCAAATGCATTAAATTAAAAAACCATGAATAATTCCAT
14780414 T
1 T
14780415 GAGTCATATG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.34
Consensus pattern (65 bp):
TAAGTTTGTATAAACAACTTAAATTTATCAAATGCATTAAATTAAAAAACCATGAATAATTCCAT
Found at i:14785027 original size:47 final size:47
Alignment explanation
Indices: 14784938--14786058 Score: 1792
Period size: 47 Copynumber: 23.6 Consensus size: 47
14784928 GTATATTTGA
*
14784938 ATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * *
14784987 ATGAATGTGAAAGTGTATACATGTGATAAGGTCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
14785034 ATGAATGTGAAAGCGTATATATATGTGATAAGGCCTAATGGCCGATATG
1 ATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
14785083 ATGAATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
14785130 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
14785179 ATGAATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
14785226 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
14785275 ATGAATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
14785322 ATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
14785371 ATGAATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCCATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
14785418 ATGAATGTGAAAGTGTATAGATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
14785465 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATCGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
14785512 ATGAATGTGAAAGTGTATATATGTGATAAGTCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
14785559 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
** *
14785606 ATGAATGTGAAAGAATATATATGTGATAAGGCCGAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * *
14785653 ATGAATGTGAAAGTGTATACATGTGATAAGGCCGAATGGCCAATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
14785700 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
14785747 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
14785794 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
14785841 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
14785888 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
*
14785935 ATGAATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCGATGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* * * * *
14785982 ATGAATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTG
1 ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
* *
14786029 ATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGAATGTGAAAGTGTATATATGTGATAAG
14786059 TCCCGAAGGG
Statistics
Matches: 995, Mismatches: 69, Indels: 18
0.92 0.06 0.02
Matches are distributed among these distances:
47 810 0.81
49 185 0.19
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
ATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTG
Done.