Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 51 of 170
Found at i:14786281 original size:37 final size:37
Alignment explanation
Indices: 14786177--14786284 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
14786167 CCGGGCTCTA
* *
14786177 AAGACCCGATGACTACGTGTGGAAATTTTGCCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
14786214 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* *
14786251 AAGACCCGATAACTTCGTGTGGAGATTTTGTCCG
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCG
14786285 AGCTAAAGGT
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:14791780 original size:65 final size:65
Alignment explanation
Indices: 14791676--14791806 Score: 262
Period size: 65 Copynumber: 2.0 Consensus size: 65
14791666 TAAGGCTTAG
14791676 TAAGTTTGTATAAACAACTTAAATTTATCAAATGCATTAAATTAAAAAACCATGAATAATTCCAT
1 TAAGTTTGTATAAACAACTTAAATTTATCAAATGCATTAAATTAAAAAACCATGAATAATTCCAT
14791741 TAAGTTTGTATAAACAACTTAAATTTATCAAATGCATTAAATTAAAAAACCATGAATAATTCCAT
1 TAAGTTTGTATAAACAACTTAAATTTATCAAATGCATTAAATTAAAAAACCATGAATAATTCCAT
14791806 T
1 T
14791807 GAGTCATATG
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.47, C:0.12, G:0.06, T:0.34
Consensus pattern (65 bp):
TAAGTTTGTATAAACAACTTAAATTTATCAAATGCATTAAATTAAAAAACCATGAATAATTCCAT
Found at i:14805249 original size:44 final size:44
Alignment explanation
Indices: 14805177--14805292 Score: 178
Period size: 44 Copynumber: 2.6 Consensus size: 44
14805167 CACCATATCG
* * * *
14805177 AATCTTATCTCCCTGAAGTTGTAATGGAGCAAGATGAAGCTATA
1 AATCCTATATCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTATA
* *
14805221 AATCCTATATCCCTGAAGTTGCAGTGGAGTAAGATGAAGCTATG
1 AATCCTATATCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTATA
14805265 AATCCTATATCCCTGAAGTTGCAGTGGA
1 AATCCTATATCCCTGAAGTTGCAGTGGA
14805293 TCGGATTAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
44 66 1.00
ACGTcount: A:0.32, C:0.17, G:0.22, T:0.28
Consensus pattern (44 bp):
AATCCTATATCCCTGAAGTTGCAGTGGAGCAAGATGAAGCTATA
Found at i:14805315 original size:44 final size:44
Alignment explanation
Indices: 14805213--14805569 Score: 154
Period size: 44 Copynumber: 8.0 Consensus size: 44
14805203 GAGCAAGATG
* ** *
14805213 AAGCTATAAATCCTATATCCCTGAAGTTGCAGTGGAGTAAGA-TG
1 AAGCTACAAATCCTATATCCCTGAAGTTGCAGTGGA-TCGGATTA
**
14805257 AAGCTATGAATCCTATATCCCTGAAGTTGCAGTGGATCGGATTA
1 AAGCTACAAATCCTATATCCCTGAAGTTGCAGTGGATCGGATTA
* * * * *
14805301 AAGCTACAATTCCTATA-CCTTTGAAGTTG--GTCAGATTGAATCTA
1 AAGCTACAAATCCTATATCC-CTGAAGTTGCAGT-GGATCGGAT-TA
* * * * * * * * *
14805345 CAATG-GA-GAATCTTATCTCCATAAAGTTGCAGTGGAACAGATTG
1 -AA-GCTACAAATCCTATATCCCTGAAGTTGCAGTGGATCGGATTA
* ** * * * * *
14805389 AAGCTACAATTTTTATACCCCTAAAGTTGCAGTGGGTTGGAATA
1 AAGCTACAAATCCTATATCCCTGAAGTTGCAGTGGATCGGATTA
* * * ** ** *
14805433 AAACTACAATGGCAAATCTTATCTCCCTGAAGTTGCAGCAGAGTAAGA-TG
1 AAGCT---A---CAAATCCTATATCCCTGAAGTTGCAGTGGA-TCGGATTA
* * *
14805483 AAGCTACAAATCCTATATCTCTAAAGTTACAGTGGATCGGATTA
1 AAGCTACAAATCCTATATCCCTGAAGTTGCAGTGGATCGGATTA
* * *
14805527 AATCTACAAATCCTATACCCCTGAAGTTGTAGTGTG-TCGGATT
1 AAGCTACAAATCCTATATCCCTGAAGTTGCAGTG-GATCGGATT
14805570 GAAGTTACTA
Statistics
Matches: 227, Mismatches: 66, Indels: 40
0.68 0.20 0.12
Matches are distributed among these distances:
42 3 0.01
43 17 0.07
44 162 0.71
45 10 0.04
46 3 0.01
47 2 0.01
50 27 0.12
51 3 0.01
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (44 bp):
AAGCTACAAATCCTATATCCCTGAAGTTGCAGTGGATCGGATTA
Found at i:14805507 original size:94 final size:94
Alignment explanation
Indices: 14805342--14805535 Score: 214
Period size: 94 Copynumber: 2.1 Consensus size: 94
14805332 CAGATTGAAT
* * **
14805342 CTACAATGGAGAATCTTATCTCCATAAAGTTGCAGTGGAACAGATTGAAGCTACAATTTTTATAC
1 CTACAATGGAGAATCTTATCTCCATAAAGTTGCAGAGGAACAGATTGAAGCTACAAATCCTATAC
* * *
14805407 CCCTAAAGTTGCAGTGGGTTGGAATAAAA
66 CCCTAAAGTTACAGTGGATCGGAATAAAA
* * *
14805436 CTACAATGGCA-AATCTTATCTCCCTGAAGTTGCAGCAGAGTA-AGA-TGAAGCTACAAATCCTA
1 CTACAATGG-AGAATCTTATCTCCATAAAGTTGCAG-AG-GAACAGATTGAAGCTACAAATCCTA
* * * *
14805498 TATCTCTAAAGTTACAGTGGATCGGATTAAAT
63 TACCCCTAAAGTTACAGTGGATCGGAATAAAA
14805530 CTACAA
1 CTACAA
14805536 ATCCTATACC
Statistics
Matches: 83, Mismatches: 14, Indels: 6
0.81 0.14 0.06
Matches are distributed among these distances:
94 76 0.92
95 5 0.06
96 2 0.02
ACGTcount: A:0.36, C:0.18, G:0.19, T:0.28
Consensus pattern (94 bp):
CTACAATGGAGAATCTTATCTCCATAAAGTTGCAGAGGAACAGATTGAAGCTACAAATCCTATAC
CCCTAAAGTTACAGTGGATCGGAATAAAA
Found at i:14805544 original size:138 final size:138
Alignment explanation
Indices: 14805366--14805637 Score: 310
Period size: 138 Copynumber: 2.0 Consensus size: 138
14805356 CTTATCTCCA
* * * ** *
14805366 TAAAGTTGCAGTGGAACAGATTGAAGCTACAATTTTTATACCCCTAAAGTTGCAGTGGGTTGGAA
1 TAAAGTTACAGTGGAACAGATTAAAGCTACAAATCCTATACCCCTAAAGTTGCAGTGGGTCGGAA
* * * *
14805431 TAAAACTACAATGGCAAATCTTATCTCCCTGAAGTTGCAGCAGAGTAAGATGAAGCTACAAATCC
66 TAAAACTACAATAGCAAATCTTATCTCCCTCAAGTTGCAGCAGAGCAAGATAAAGCTACAAATCC
14805496 TATATCTC
131 TATATCTC
* * * * * * *
14805504 TAAAGTTACAGTGGATCGGATTAAATCTACAAATCCTATACCCCTGAAGTTGTAGTGTGTCGGAT
1 TAAAGTTACAGTGGAACAGATTAAAGCTACAAATCCTATACCCCTAAAGTTGCAGTGGGTCGGAA
* ** * * ** * *
14805569 TGAAGTTACTATAGCGAATCTTATCTCCCTCAAGTTGCAGTGGAGCAAGATAAAGCTATAATTCC
66 TAAAACTACAATAGCAAATCTTATCTCCCTCAAGTTGCAGCAGAGCAAGATAAAGCTACAAATCC
14805634 TATA
131 TATA
14805638 CCCTTGAAGT
Statistics
Matches: 108, Mismatches: 26, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
138 108 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.29
Consensus pattern (138 bp):
TAAAGTTACAGTGGAACAGATTAAAGCTACAAATCCTATACCCCTAAAGTTGCAGTGGGTCGGAA
TAAAACTACAATAGCAAATCTTATCTCCCTCAAGTTGCAGCAGAGCAAGATAAAGCTACAAATCC
TATATCTC
Found at i:14805610 original size:94 final size:94
Alignment explanation
Indices: 14805506--14805952 Score: 416
Period size: 94 Copynumber: 4.8 Consensus size: 94
14805496 TATATCTCTA
* * * * * * *
14805506 AAGTTACAGTGGATCGGATTAAATCTACAAATCCTATACCCCTGAAGTTGTAGTGTGTCGGATTG
1 AAGTTGCAGTGGAGCAGATTAAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGAATTG
*
14805571 AAGT-TACTATAGCGAATCTTATCTCCCTC
66 AA-TCTACTATAGCGAATCTTATCTCCCTG
* * * * * * *
14805600 AAGTTGCAGTGGAGCAAGA-TAAAGCTATAATTCCTATACCCTTGAAGTAGTAGTGGGTAGAAAT
1 AAGTTGCAGTGGAGC-AGATTAAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGAATT
* * * ** *
14805664 AAAACTACAATTTCAAATCTTATCTCCCTG
65 GAATCTACTATAGCGAATCTTATCTCCCTG
* * * * ** *
14805694 AAGTTGTAGTGGAGCAAGA-TGAAGCTACAAATCCTATACCCATAAAGTTGCAGTCAGTCAAATT
1 AAGTTGCAGTGGAGC-AGATTAAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGAATT
* * *
14805758 GAATCTACCATGGCGAATCTTCTCTCCCTG
65 GAATCTACTATAGCGAATCTTATCTCCCTG
* * * * * *
14805788 AAATTGCAGTGCAGTAGATTGAAGTTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCAAATTG
1 AAGTTGCAGTGGAGCAGATTAAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGAATTG
* *
14805853 AATCTACTATAGCGAATCTTATAT-CCTA
66 AATCTACTATAGCGAATCTTATCTCCCTG
* * * * * * *
14805881 AAGTTGCAGTAGAGAATATTGAAGCTACAAATCCTATACCCCTAAAGTTGCAGTGGGTTGGATTG
1 AAGTTGCAGTGGAGCAGATTAAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGAATTG
*
14805946 AAACTAC
66 AATCTAC
14805953 AACAAAAAAT
Statistics
Matches: 286, Mismatches: 64, Indels: 7
0.80 0.18 0.02
Matches are distributed among these distances:
93 67 0.23
94 217 0.76
95 2 0.01
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.29
Consensus pattern (94 bp):
AAGTTGCAGTGGAGCAGATTAAAGCTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCGAATTG
AATCTACTATAGCGAATCTTATCTCCCTG
Found at i:14805765 original size:232 final size:226
Alignment explanation
Indices: 14805220--14805747 Score: 648
Period size: 232 Copynumber: 2.3 Consensus size: 226
14805210 ATGAAGCTAT
* * ** *
14805220 AAATCCTATATCCCTGAAGTTGCAGTGGAGTAAGATGAAGCTATGAATCCTATATCCCTGAAGTT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATGAAGCTACAAATCCTATATCCCTAAAGTT
* * ** *
14805285 GCAGTGGATCGGATTAAAGCTACAATTCCTATACCTTTGAAGTTGGTCAGATTGAATCTACAATG
66 GCAGTGGATCGGATTAAATCTACAAATCCTATACCCCTGAAGTTGGTCAGATTGAATCTACAATA
* **
14805350 GAGAATCTTATCTCCATAAAGTTGCAGTGGAACAGATTGAAGCTACAATTTTTATACCCCTAAAG
131 GAGAATCTTATCTCCATAAAGTTGCAGTGGAACAGATTAAAGCTACAATTCCTATACCCCTAAAG
* * *
14805415 TTGCAGTGGGTTGGAATAAAACTACAATGGC
196 TAGCAGTGGGTAGAAATAAAACTACAATGGC
** *
14805446 AAATCTTATCTCCCTGAAGTTGCAGCAGAGTAAGATGAAGCTACAAATCCTATATCTCTAAAGTT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATGAAGCTACAAATCCTATATCCCTAAAGTT
* *
14805511 ACAGTGGATCGGATTAAATCTACAAATCCTATACCCCTGAAGTTGTAGTGTGTCGGATTGAAGT-
66 GCAGTGGATCGGATTAAATCTACAAATCCTATACCCCTGAA---GT--TG-GTCAGATTGAA-TC
* * * * * *
14805575 TACTATAGCGAATCTTATCTCCCTCAAGTTGCAGTGGAGCAAGA-TAAAGCTATAATTCCTATAC
124 TACAATAGAGAATCTTATCTCCATAAAGTTGCAGTGGAAC-AGATTAAAGCTACAATTCCTATAC
* * * **
14805639 CCTTGAAGTAGTAGTGGGTAGAAATAAAACTACAATTTC
188 CCCTAAAGTAGCAGTGGGTAGAAATAAAACTACAATGGC
* *
14805678 AAATCTTATCTCCCTGAAGTTGTAGTGGAGCAAGATGAAGCTACAAATCCTATA-CCCATAAAGT
1 AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATGAAGCTACAAATCCTATATCCC-TAAAGT
14805742 TGCAGT
65 TGCAGT
14805748 CAGTCAAATT
Statistics
Matches: 255, Mismatches: 38, Indels: 12
0.84 0.12 0.04
Matches are distributed among these distances:
226 93 0.36
229 2 0.01
231 4 0.02
232 152 0.60
233 4 0.02
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (226 bp):
AAATCTTATCTCCCTGAAGTTGCAGTGGAGTAAGATGAAGCTACAAATCCTATATCCCTAAAGTT
GCAGTGGATCGGATTAAATCTACAAATCCTATACCCCTGAAGTTGGTCAGATTGAATCTACAATA
GAGAATCTTATCTCCATAAAGTTGCAGTGGAACAGATTAAAGCTACAATTCCTATACCCCTAAAG
TAGCAGTGGGTAGAAATAAAACTACAATGGC
Found at i:14805853 original size:44 final size:43
Alignment explanation
Indices: 14805783--14805935 Score: 116
Period size: 44 Copynumber: 3.4 Consensus size: 43
14805773 AATCTTCTCT
*
14805783 CCCTGAAA-TTGCAGTGCAGTAGATTGAAGTTACAAATCCTATAC
1 CCCT-AAAGTTGCAGTG-AGTAAATTGAAGTTACAAATCCTATAC
* * *
14805827 CCCTGAAGTTGCAGTGGGTCAAATTGAA-TCTACTATAGCGAATCTTATA-
1 CCCTAAAGTTGCAGTGAGT-AAATTGAAGT-TAC---A---AATCCTATAC
* *
14805876 TCCTAAAGTTGCAGTAGAG-AATATTGAAGCTACAAATCCTATAC
1 CCCTAAAGTTGCAGT-GAGTAA-ATTGAAGTTACAAATCCTATAC
14805920 CCCTAAAGTTGCAGTG
1 CCCTAAAGTTGCAGTG
14805936 GGTTGGATTG
Statistics
Matches: 86, Mismatches: 10, Indels: 27
0.70 0.08 0.22
Matches are distributed among these distances:
43 14 0.16
44 36 0.42
46 1 0.01
47 1 0.01
48 2 0.02
49 22 0.26
50 10 0.12
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (43 bp):
CCCTAAAGTTGCAGTGAGTAAATTGAAGTTACAAATCCTATAC
Found at i:14805946 original size:44 final size:43
Alignment explanation
Indices: 14805804--14805954 Score: 108
Period size: 44 Copynumber: 3.3 Consensus size: 43
14805794 CAGTGCAGTA
* * *
14805804 GATTGAAGTTACAAATCCTATACCCCTGAAGTTGCAGTGGGTCA
1 GATTGAAGCTACAAATCCTATACCCCTAAAGTTGCAGTGGGT-T
* * * * **
14805848 AATTGAATCTACTATAGCGAATCTTATA-TCCTAAAGTTGCAGTAGAGAAT
1 GATTGAAGCTAC---A---AATCCTATACCCCTAAAGTTGCAGT-G-GGTT
14805898 -ATTGAAGCTACAAATCCTATACCCCTAAAGTTGCAGTGGGTT
1 GATTGAAGCTACAAATCCTATACCCCTAAAGTTGCAGTGGGTT
*
14805940 GGATTGAAACTACAA
1 -GATTGAAGCTACAA
14805955 CAAAAAATCT
Statistics
Matches: 81, Mismatches: 15, Indels: 22
0.69 0.13 0.19
Matches are distributed among these distances:
42 2 0.02
43 9 0.11
44 35 0.43
46 1 0.01
47 1 0.01
49 23 0.28
50 9 0.11
51 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.28
Consensus pattern (43 bp):
GATTGAAGCTACAAATCCTATACCCCTAAAGTTGCAGTGGGTT
Found at i:14806351 original size:16 final size:16
Alignment explanation
Indices: 14806332--14806372 Score: 73
Period size: 16 Copynumber: 2.6 Consensus size: 16
14806322 CAATAGCCCA
*
14806332 AAACCTTAAAAAATAT
1 AAACCCTAAAAAATAT
14806348 AAACCCTAAAAAATAT
1 AAACCCTAAAAAATAT
14806364 AAACCCTAA
1 AAACCCTAA
14806373 CCCCATTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.61, C:0.20, G:0.00, T:0.20
Consensus pattern (16 bp):
AAACCCTAAAAAATAT
Found at i:14811309 original size:4 final size:4
Alignment explanation
Indices: 14811300--14811331 Score: 64
Period size: 4 Copynumber: 8.0 Consensus size: 4
14811290 TTTCCCTCTT
14811300 TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG
14811332 ACATGAATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:14814547 original size:157 final size:157
Alignment explanation
Indices: 14814261--14814570 Score: 530
Period size: 157 Copynumber: 2.0 Consensus size: 157
14814251 ATAAGAATAT
*
14814261 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTATAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
* * *
14814326 AAATATGATTAAATTATTTATTATTCATATTAATAATCTTATCAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTATTCATAATAATAATCTTATCAAAATTTAAAAAACAATAACAA
14814391 TAATAATTTACCAAAACAAATTTCTGG
131 TAATAATTTACCAAAACAAATTTCTGG
* *
14814418 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATGTTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
* *
14814483 AAATATGATTAAAATATTTATTATTGATAATAATAATCTTATTAAAATTTAAAAAACAATAACAA
66 AAATATGATTAAAATATTTATTATTCATAATAATAATCTTATCAAAATTTAAAAAACAATAACAA
* *
14814548 TAATCATTTACCAAAATAAATTT
131 TAATAATTTACCAAAACAAATTT
14814571 ATGCTAAGGG
Statistics
Matches: 143, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
157 143 1.00
ACGTcount: A:0.48, C:0.05, G:0.04, T:0.44
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAAGTAAAATATATTTAATAATAATTATGTTT
AAATATGATTAAAATATTTATTATTCATAATAATAATCTTATCAAAATTTAAAAAACAATAACAA
TAATAATTTACCAAAACAAATTTCTGG
Found at i:14814721 original size:16 final size:16
Alignment explanation
Indices: 14814700--14814767 Score: 118
Period size: 16 Copynumber: 4.2 Consensus size: 16
14814690 GATTTGCTAT
14814700 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
14814716 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
14814732 TACACTTCTAATCCAA
1 TACACCTCTAATCCAA
*
14814748 TACATCTCTAATCCAA
1 TACACCTCTAATCCAA
14814764 TACA
1 TACA
14814768 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.38, C:0.34, G:0.00, T:0.28
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:14815387 original size:32 final size:32
Alignment explanation
Indices: 14815346--14815410 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
14815336 ACTTTCACTG
* *
14815346 GCCTCTATAATATTGATTCTTGATCAAGTTTT
1 GCCTCTATAATACTGATACTTGATCAAGTTTT
*
14815378 GCCTCTATAATCCTGATACTTGATCAAGTTTT
1 GCCTCTATAATACTGATACTTGATCAAGTTTT
14815410 G
1 G
14815411 ATCTCTCTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.25, C:0.18, G:0.14, T:0.43
Consensus pattern (32 bp):
GCCTCTATAATACTGATACTTGATCAAGTTTT
Found at i:14817083 original size:427 final size:427
Alignment explanation
Indices: 14816288--14817144 Score: 1473
Period size: 427 Copynumber: 2.0 Consensus size: 427
14816278 TTGACTTTTC
* *
14816288 ATGAAGGAAGATGTAATGATTACCATAAGACAAAATATGATTATATTGGGAGAACGGATATTATC
1 ATGAAGGAAGATGTAATGATTACAATAAGACAAAATATGATTATATTGGGAGAACAGATATTATC
* * *
14816353 CCAAAGAGACTAAGGATATCCTATGAGGGTAACACGCCAATGATAATGTCATTGGAAGAGCACTA
66 CCAAAGAGACTAAGGATATCCTATGAGGGTAACACACCAATGACAAGGTCATTGGAAGAGCACTA
* *
14816418 AGTAGTTACTTTCGTAATGGTATGTCATTGGAGAGAGCTCAGTCACGATACTATAGTGGAATGAC
131 AATAGTTACTTTCGTAATGGTATGTCATTAGAGAGAGCTCAGTCACGATACTATAGTGGAATGAC
*
14816483 TTCGTGACTAAATGAGTTTATAATTAATAGGCGAAAAGCCGAAACTTAATTAAAAATCATTTGAC
196 TTCGTGACTAAATAAGTTTATAATTAATAGGCGAAAAGCCGAAACTTAATTAAAAATCATTTGAC
* * *
14816548 CCTTAACTTCATATGTCCAATTGGTCCCTCTGCTAGCTCATTGAAACCATAAATGAATTGCGTGT
261 CCTCAACTTCATATGTCCAATTGGTCCCTCCGCTAGCTCATTGAAACCATAAATGAATTGCATGT
*
14816613 TTGAATAAAAATGAATGGAAGGAATAGAAAAAGAGAAATAGGAAACATTCAGGATTGATTATTAC
326 TTGAATAAAAATGAATGGAAGGAATAGAAAAAGAGAAATAGGAAACATTCAGGAATGATTATTAC
14816678 TTTCTCCAAAATGGAGAAATAGAATCAGTTGAAAATA
391 TTTCTCCAAAATGGAGAAATAGAATCAGTTGAAAATA
* * *
14816715 ATGAAGGAAGATGTAATGGTTACAATAAGATAAAATATGATTATATTGGGAGAACATATATTATC
1 ATGAAGGAAGATGTAATGATTACAATAAGACAAAATATGATTATATTGGGAGAACAGATATTATC
* *
14816780 CCAAAGAGATTAAGGATATCCTATGAGGGTAACACACTAATGACAAGGTCATTGGAAGAGCACTA
66 CCAAAGAGACTAAGGATATCCTATGAGGGTAACACACCAATGACAAGGTCATTGGAAGAGCACTA
*
14816845 AATAGTTACTTTCGTAATTGTATGTCATTAGAGAGAGCTCAGTCACGATACTATAGTGGAATGAC
131 AATAGTTACTTTCGTAATGGTATGTCATTAGAGAGAGCTCAGTCACGATACTATAGTGGAATGAC
* *
14816910 TTCGTGACTTAATAAGTTTATAATTAATAGGCGAAAAGCC-AGAACTTAATTATAAATCATTTGA
196 TTCGTGACTAAATAAGTTTATAATTAATAGGCGAAAAGCCGA-AACTTAATTAAAAATCATTTGA
* *
14816974 GCCTCAACTTCATATGTCCAGTTGGTCCCTCCGCTAGCTCATTGAAACCATAAATGAATTGCATG
260 CCCTCAACTTCATATGTCCAATTGGTCCCTCCGCTAGCTCATTGAAACCATAAATGAATTGCATG
14817039 TTTGAATAAAAATGAATGGAAGGAATAGAAAAAGAGAAATAGGAAACATTCAGGAATGATTATTA
325 TTTGAATAAAAATGAATGGAAGGAATAGAAAAAGAGAAATAGGAAACATTCAGGAATGATTATTA
* * *
14817104 CTTTCTCCAAAATGGAGAAATGGAATCATTTGGAAATA
390 CTTTCTCCAAAATGGAGAAATAGAATCAGTTGAAAATA
14817142 ATG
1 ATG
14817145 TAGTTTTTCA
Statistics
Matches: 404, Mismatches: 25, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
426 1 0.00
427 403 1.00
ACGTcount: A:0.39, C:0.13, G:0.20, T:0.28
Consensus pattern (427 bp):
ATGAAGGAAGATGTAATGATTACAATAAGACAAAATATGATTATATTGGGAGAACAGATATTATC
CCAAAGAGACTAAGGATATCCTATGAGGGTAACACACCAATGACAAGGTCATTGGAAGAGCACTA
AATAGTTACTTTCGTAATGGTATGTCATTAGAGAGAGCTCAGTCACGATACTATAGTGGAATGAC
TTCGTGACTAAATAAGTTTATAATTAATAGGCGAAAAGCCGAAACTTAATTAAAAATCATTTGAC
CCTCAACTTCATATGTCCAATTGGTCCCTCCGCTAGCTCATTGAAACCATAAATGAATTGCATGT
TTGAATAAAAATGAATGGAAGGAATAGAAAAAGAGAAATAGGAAACATTCAGGAATGATTATTAC
TTTCTCCAAAATGGAGAAATAGAATCAGTTGAAAATA
Found at i:14823372 original size:15 final size:16
Alignment explanation
Indices: 14823337--14823375 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
14823327 TTTAAAACTC
*
14823337 AAATTAAAATATTAAT
1 AAATTAATATATTAAT
14823353 AAATTAATAT-TTAAT
1 AAATTAATATATTAAT
*
14823368 TAATTAAT
1 AAATTAAT
14823376 TAATCTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
AAATTAATATATTAAT
Found at i:14826038 original size:14 final size:13
Alignment explanation
Indices: 14826018--14826055 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
14826008 TACAAACAAA
*
14826018 TAAAAATTGAAAT
1 TAAAAATTAAAAT
14826031 TGAAAAATTAAAAT
1 T-AAAAATTAAAAT
14826045 T-AAAATTAAAA
1 TAAAAATTAAAA
14826056 CTTTTGGATT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
12 10 0.43
13 1 0.04
14 12 0.52
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (13 bp):
TAAAAATTAAAAT
Found at i:14826043 original size:20 final size:19
Alignment explanation
Indices: 14826015--14826055 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
14826005 AAGTACAAAC
*
14826015 AAATAAAAATTGAAATTGAA
1 AAATAAAAATTAAAATT-AA
*
14826035 AAATTAAAATTAAAATTAA
1 AAATAAAAATTAAAATTAA
14826054 AA
1 AA
14826056 CTTTTGGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (19 bp):
AAATAAAAATTAAAATTAA
Found at i:14828445 original size:186 final size:186
Alignment explanation
Indices: 14828131--14828505 Score: 750
Period size: 186 Copynumber: 2.0 Consensus size: 186
14828121 TTATAAACCT
14828131 TCAGTAAAAATCGGCATGGCCTAAGAAACTTCGAACTCATTTCACACTAATTCGTGGTGGTAATT
1 TCAGTAAAAATCGGCATGGCCTAAGAAACTTCGAACTCATTTCACACTAATTCGTGGTGGTAATT
14828196 TTCAATTACGTCCACTTTCGCTTTATCAACTTCGACCTCATTTCTAAAAATTTTATGTCCTAAGA
66 TTCAATTACGTCCACTTTCGCTTTATCAACTTCGACCTCATTTCTAAAAATTTTATGTCCTAAGA
14828261 CAATTCCCTCATTAACCATAAAATGACATTTCTCCCAATTAATGACAAGATTTGTC
131 CAATTCCCTCATTAACCATAAAATGACATTTCTCCCAATTAATGACAAGATTTGTC
14828317 TCAGTAAAAATCGGCATGGCCTAAGAAACTTCGAACTCATTTCACACTAATTCGTGGTGGTAATT
1 TCAGTAAAAATCGGCATGGCCTAAGAAACTTCGAACTCATTTCACACTAATTCGTGGTGGTAATT
14828382 TTCAATTACGTCCACTTTCGCTTTATCAACTTCGACCTCATTTCTAAAAATTTTATGTCCTAAGA
66 TTCAATTACGTCCACTTTCGCTTTATCAACTTCGACCTCATTTCTAAAAATTTTATGTCCTAAGA
14828447 CAATTCCCTCATTAACCATAAAATGACATTTCTCCCAATTAATGACAAGATTTGTC
131 CAATTCCCTCATTAACCATAAAATGACATTTCTCCCAATTAATGACAAGATTTGTC
14828503 TCA
1 TCA
14828506 TCGCATCTCT
Statistics
Matches: 189, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
186 189 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (186 bp):
TCAGTAAAAATCGGCATGGCCTAAGAAACTTCGAACTCATTTCACACTAATTCGTGGTGGTAATT
TTCAATTACGTCCACTTTCGCTTTATCAACTTCGACCTCATTTCTAAAAATTTTATGTCCTAAGA
CAATTCCCTCATTAACCATAAAATGACATTTCTCCCAATTAATGACAAGATTTGTC
Found at i:14839434 original size:26 final size:26
Alignment explanation
Indices: 14839398--14839460 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
14839388 ATGAATTTTC
* *
14839398 TCAAATTTTTATAGTGG-GTAAAATCG
1 TCAAAATTTTATAG-GGTGTAAAATCA
* *
14839424 TCAATATTTTATTGGGTGTAAAATCA
1 TCAAAATTTTATAGGGTGTAAAATCA
14839450 TCAAAATTTTA
1 TCAAAATTTTA
14839461 CTGGTGCAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 2 0.06
26 29 0.94
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (26 bp):
TCAAAATTTTATAGGGTGTAAAATCA
Found at i:14839472 original size:25 final size:26
Alignment explanation
Indices: 14839417--14839472 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
14839407 TATAGTGGGT
* * * *
14839417 AAAATCGTCAATATTTTATTGGGTGT
1 AAAATCATCAAAATTTTACTGGGTGC
14839443 AAAATCATCAAAATTTTACT-GGTGC
1 AAAATCATCAAAATTTTACTGGGTGC
14839468 AAAAT
1 AAAAT
14839473 TGGGATGAGA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
25 9 0.35
26 17 0.65
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.36
Consensus pattern (26 bp):
AAAATCATCAAAATTTTACTGGGTGC
Found at i:14841031 original size:26 final size:26
Alignment explanation
Indices: 14840976--14841103 Score: 87
Period size: 27 Copynumber: 4.8 Consensus size: 26
14840966 ATGAAGTTTT
* * * **
14840976 CCACAAAAGCATTCTTTCATATTATG
1 CCACAAAGGCTTTCTTTCATGTTACA
* *
14841002 CCACGAAGGCTCTCTTTCATGTTACA
1 CCACAAAGGCTTTCTTTCATGTTACA
*
14841028 CCACAAAGGTTTTCTTTTCATGATT-CA
1 CCACAAAGGCTTTC-TTTCATG-TTACA
* * **
14841055 CCATAGAGGCTTTGCTTTCATGTTATG
1 CCACAAAGGCTTT-CTTTCATGTTACA
* *
14841082 TCACAAAAGCTTTCTTTTCATG
1 CCACAAAGGCTTTC-TTTCATG
14841104 ATTTACCATA
Statistics
Matches: 78, Mismatches: 19, Indels: 9
0.74 0.18 0.08
Matches are distributed among these distances:
26 33 0.42
27 42 0.54
28 3 0.04
ACGTcount: A:0.26, C:0.23, G:0.13, T:0.38
Consensus pattern (26 bp):
CCACAAAGGCTTTCTTTCATGTTACA
Found at i:14841116 original size:27 final size:27
Alignment explanation
Indices: 14841038--14841127 Score: 85
Period size: 27 Copynumber: 3.3 Consensus size: 27
14841028 CCACAAAGGT
* * *
14841038 TTTCTTTTCATGATTCACCATAGAGGC
1 TTTCTTTTCATGATTTACCATAAAAGC
** *
14841065 TTTGC-TTTCATG-TTATGTCACAAAAGC
1 TTT-CTTTTCATGATT-TACCATAAAAGC
14841092 TTTCTTTTCATGATTTACCATAAAAGC
1 TTTCTTTTCATGATTTACCATAAAAGC
*
14841119 TTTCATTTC
1 TTTCTTTTC
14841128 TGACGTGTTT
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
26 3 0.06
27 43 0.88
28 3 0.06
ACGTcount: A:0.24, C:0.20, G:0.11, T:0.44
Consensus pattern (27 bp):
TTTCTTTTCATGATTTACCATAAAAGC
Found at i:14841121 original size:54 final size:54
Alignment explanation
Indices: 14841015--14841121 Score: 142
Period size: 54 Copynumber: 2.0 Consensus size: 54
14841005 CGAAGGCTCT
* * * *
14841015 CTTTCATGTTACACCACAAAGGTTTTCTTTTCATGATTCACCATAGAGGCTTTG
1 CTTTCATGTTACACCACAAAAGCTTTCTTTTCATGATTCACCATAAAAGCTTTG
*** *
14841069 CTTTCATGTTATGTCACAAAAGCTTTCTTTTCATGATTTACCATAAAAGCTTT
1 CTTTCATGTTACACCACAAAAGCTTTCTTTTCATGATTCACCATAAAAGCTTT
14841122 CATTTCTGAC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 45 1.00
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.41
Consensus pattern (54 bp):
CTTTCATGTTACACCACAAAAGCTTTCTTTTCATGATTCACCATAAAAGCTTTG
Found at i:14844256 original size:56 final size:56
Alignment explanation
Indices: 14844187--14844296 Score: 202
Period size: 56 Copynumber: 2.0 Consensus size: 56
14844177 ATTAACATAG
* *
14844187 CCACTTGACCAGGAACATTTATTAACATAACCATATAACTGTACACACCCACTCAA
1 CCACTTGAACAGGAACATTTATTAACATAACCATATAACTGTACAAACCCACTCAA
14844243 CCACTTGAACAGGAACATTTATTAACATAACCATATAACTGTACAAACCCACTC
1 CCACTTGAACAGGAACATTTATTAACATAACCATATAACTGTACAAACCCACTC
14844297 TATACGCTGA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.40, C:0.29, G:0.07, T:0.24
Consensus pattern (56 bp):
CCACTTGAACAGGAACATTTATTAACATAACCATATAACTGTACAAACCCACTCAA
Found at i:14848975 original size:20 final size:20
Alignment explanation
Indices: 14848952--14848999 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
14848942 CGCCTAGCAA
* *
14848952 ATACGATTTGCAACTAGTTG
1 ATACGATTAGCAACTAGTGG
*
14848972 ATACGATTAGCAACTGGTGG
1 ATACGATTAGCAACTAGTGG
14848992 ATACGATT
1 ATACGATT
14849000 GACAACTTCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.31, C:0.15, G:0.23, T:0.31
Consensus pattern (20 bp):
ATACGATTAGCAACTAGTGG
Found at i:14849005 original size:20 final size:20
Alignment explanation
Indices: 14848952--14849006 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
14848942 CGCCTAGCAA
*
14848952 ATACGATTTG-CAACTAGTTG
1 ATACGA-TTGACAACTAGTGG
*
14848972 ATACGATT-AGCAACTGGTGG
1 ATACGATTGA-CAACTAGTGG
14848992 ATACGATTGACAACT
1 ATACGATTGACAACT
14849007 TCTTTCCAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
19 2 0.07
20 27 0.90
21 1 0.03
ACGTcount: A:0.33, C:0.16, G:0.22, T:0.29
Consensus pattern (20 bp):
ATACGATTGACAACTAGTGG
Found at i:14853258 original size:30 final size:30
Alignment explanation
Indices: 14853224--14853281 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
14853214 AGGTGGGAGG
*
14853224 GGAAGAGAATAAAAGTTTTAGGGGAAAAGT
1 GGAAGAGAATAAAAATTTTAGGGGAAAAGT
* * *
14853254 GGAAGGGAGTAAAAATTTTGGGGGAAAA
1 GGAAGAGAATAAAAATTTTAGGGGAAAA
14853282 TAAAAGGTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.36, T:0.19
Consensus pattern (30 bp):
GGAAGAGAATAAAAATTTTAGGGGAAAAGT
Found at i:14854384 original size:37 final size:37
Alignment explanation
Indices: 14854334--14854443 Score: 184
Period size: 37 Copynumber: 3.0 Consensus size: 37
14854324 AGACCTTTAG
* * *
14854334 CCCGGACGAAATCTCCACACGAAGTTATCGGGTCTTA
1 CCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
14854371 CCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
1 CCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
*
14854408 CCCGGGCAAAATCTCCACACGTAGTCATCGGGTCTT
1 CCCGGACAAAATCTCCACACGTAGTCATCGGGTCTT
14854444 TAGAGCTCGG
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.25, C:0.32, G:0.21, T:0.22
Consensus pattern (37 bp):
CCCGGACAAAATCTCCACACGTAGTCATCGGGTCTTA
Found at i:14854633 original size:47 final size:47
Alignment explanation
Indices: 14854562--14855320 Score: 708
Period size: 47 Copynumber: 15.6 Consensus size: 47
14854552 CCCTTCGGGA
* * * * * *
14854562 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14854609 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14854656 CTTACCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14854703 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14854750 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14854797 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14854844 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* ** *
14854891 CTTATCAC-TCTATTAGGC-CTTATCACATATATACACTTTCACATTCATCACA-TCGG-
1 CTTATCACATATA-TA--CACTT-TCAC--AT-T-CA---TCACA-TCGGC-CATTAGGC
* * * * *
14854947 C-TATTAGGCCT-TAT-CACATATATACACTTTCA-CATTCATC--ACA-TCGGTC
1 CTTATCA--CATATATACAC-T-T-T-CACATTCATCA--CATCGGCCATTAGG-C
* * * ** *
14854996 ATTAGGC-C-T-TAT-CACATATATATACACTT--TCACATTCATCACA-TCGGCCATTCGGC
1 CTTA-TCACATATATACAC-T-T-T-CACA-TTCATCACA-TCGGC-CATTAGG--------C
* *
14855052 CTTATCACATGTATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14855099 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
14855146 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
14855193 CTTATCACATATATATACACTTTTACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
14855242 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
14855289 CTTATCGCATATATATACGCTTTCACATTCAT
1 CTTAT--CACATATATACACTTTCACATTCAT
14855321 TCAAATATAC
Statistics
Matches: 617, Mismatches: 45, Indels: 98
0.81 0.06 0.13
Matches are distributed among these distances:
45 2 0.00
46 5 0.01
47 446 0.72
48 6 0.01
49 79 0.13
50 4 0.01
51 4 0.01
52 1 0.00
53 5 0.01
54 5 0.01
55 16 0.03
56 21 0.03
57 14 0.02
58 6 0.01
59 3 0.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:14854816 original size:141 final size:141
Alignment explanation
Indices: 14854562--14855320 Score: 1104
Period size: 141 Copynumber: 5.2 Consensus size: 141
14854552 CCCTTCGGGA
* * * * * * *
14854562 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
14854627 TTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
14854692 GGCCATTAGGC
131 GGCCATTAGGC
14854703 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
14854768 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
*
14854833 GGCTATTAGGC
131 GGCCATTAGGC
*
14854844 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACTCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC-T-T-A-TC----A---
*
14854909 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACAC
55 C--AT-----ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
14854974 TTTCACATTCATCACATCGGTCATTAGGC
113 TTTCACATTCATCACATCGGCCATTAGGC
* *
14855003 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGCCTTATCACATGTATAC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
14855068 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
14855133 TCGGCTATTAGGC
129 TCGGCCATTAGGC
14855146 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* * * *
14855211 ACTTTTACATTCATCACATTGGCCATTCGGCCTTATCACATGTATACACTTTCACATTCATCACA
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
14855276 TCGGCCATTAGGC
129 TCGGCCATTAGGC
* *
14855289 CTTATCGCATATATATACGCTTTCACATTCAT
1 CTTAT--CACATATATACACTTTCACATTCAT
14855321 TCAAATATAC
Statistics
Matches: 566, Mismatches: 28, Indels: 44
0.89 0.04 0.07
Matches are distributed among these distances:
141 225 0.40
142 1 0.00
143 174 0.31
144 1 0.00
145 25 0.04
148 2 0.00
149 1 0.00
150 1 0.00
152 1 0.00
153 1 0.00
154 2 0.00
157 2 0.00
158 1 0.00
159 90 0.16
160 1 0.00
161 38 0.07
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (141 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTAGGC
Found at i:14854905 original size:18 final size:18
Alignment explanation
Indices: 14854882--14854916 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
14854872 ATCACATCGG
14854882 CTATTAGGCCTTATCACT
1 CTATTAGGCCTTATCACT
14854900 CTATTAGGCCTTATCAC
1 CTATTAGGCCTTATCAC
14854917 ATATATACAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.29, G:0.11, T:0.37
Consensus pattern (18 bp):
CTATTAGGCCTTATCACT
Found at i:14854911 original size:65 final size:65
Alignment explanation
Indices: 14854835--14854963 Score: 258
Period size: 65 Copynumber: 2.0 Consensus size: 65
14854825 ATCACATCGG
14854835 CTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACT
1 CTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACT
14854900 CTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
1 CTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC
14854964 ATATATACAC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.28, C:0.28, G:0.09, T:0.35
Consensus pattern (65 bp):
CTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACT
Found at i:14854920 original size:112 final size:112
Alignment explanation
Indices: 14854790--14855010 Score: 426
Period size: 112 Copynumber: 2.0 Consensus size: 112
14854780 CACATCGGCC
14854790 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA
1 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA
14854855 TATACACTTTCACATTCATCACATCGG-CTATTAGGCCTTATCACTCT
66 TATACACTTTCACATTCATCACATCGGTC-ATTAGGCCTTATCACTCT
14854902 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA
1 ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA
14854967 TATACACTTTCACATTCATCACATCGGTCATTAGGCCTTATCAC
66 TATACACTTTCACATTCATCACATCGGTCATTAGGCCTTATCAC
14855011 ATATATATAC
Statistics
Matches: 108, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
112 107 0.99
113 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (112 bp):
ATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATA
TATACACTTTCACATTCATCACATCGGTCATTAGGCCTTATCACTCT
Found at i:14864902 original size:22 final size:21
Alignment explanation
Indices: 14864874--14864925 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 21
14864864 AGCGTTTGGG
14864874 TTCTTTTTATTCTTTATTTATT
1 TTCTTTTTATTCTTT-TTTATT
*
14864896 TTCTTTTCTTTTCTTTTTTATT
1 TTCTTTT-TATTCTTTTTTATT
*
14864918 TTCGTTTT
1 TTCTTTTT
14864926 GAAAAACTGA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
21 1 0.04
22 19 0.70
23 7 0.26
ACGTcount: A:0.08, C:0.12, G:0.02, T:0.79
Consensus pattern (21 bp):
TTCTTTTTATTCTTTTTTATT
Found at i:14866654 original size:317 final size:317
Alignment explanation
Indices: 14866064--14866698 Score: 1137
Period size: 317 Copynumber: 2.0 Consensus size: 317
14866054 GGTTTATTTC
*
14866064 TTTGAAATAGGTCCGTCTATTCAACCAATGCCATTATTTAAGCTTGCATTTCAAAGGATTGTATT
1 TTTGAAATAGGTCCATCTATTCAACCAATGCCATTATTTAAGCTTGCATTTCAAAGGATTGTATT
*
14866129 TTAAAATCTTTTCAAACTTTCGGCATTAAGACATTAGACAATCAATTCGGTACCAATTTTGGGCG
66 TTAAAATCTTTTCAAACTTTCAGCATTAAGACATTAGACAATCAATTCGGTACCAATTTTGGGCG
* * *
14866194 TCACGAGGGTGCTAACCCTTCCTCGTGCATAACCAACTCCCGAACCTGTTTTCTTAAAACTCGCA
131 TCACGAGGGTGCTAACCCTTCATCGTGCATAACCAACTCCCGAACCTATTTTCTCAAAACTCGCA
* *
14866259 GACCTAAAATTATTTTGAGGGTGATCCGATCGCACCATAATAAAAGGTCGGTGGCGACTCCCGTT
196 GACCTAAAATTATTTTCAGGGTGATCCGATCGCACCATAATAAAAGGTCGGTGGCGACTCCCATT
*
14866324 TTCATTTTAAAAGTTGATCCCCCATTTTTCAAACATGAAAAAATGGTTTCGACAGCT
261 TTCATTTTAAAAGTCGATCCCCCATTTTTCAAACATGAAAAAATGGTTTCGACAGCT
14866381 TTTGAAATAGGTCCATCTATTCAACCAATGCCATTATTTAAGCTTGCATTTCAAAGGATTGTATT
1 TTTGAAATAGGTCCATCTATTCAACCAATGCCATTATTTAAGCTTGCATTTCAAAGGATTGTATT
*
14866446 TTAAAATCTTTTCAAATTTTCAGCATTAAGACATTAGACAATCAATTCGGTACCAATTTTGGGCG
66 TTAAAATCTTTTCAAACTTTCAGCATTAAGACATTAGACAATCAATTCGGTACCAATTTTGGGCG
* *
14866511 TCACGAGGGTGCTAACCCTTCATCGTGCGTAACCGACTCCCGAACCTATTTTCTCAAAACTCGCA
131 TCACGAGGGTGCTAACCCTTCATCGTGCATAACCAACTCCCGAACCTATTTTCTCAAAACTCGCA
*
14866576 GACCTAAAATTATTTTCTGGGTGATCCGATCGCACCATAATAAAAGGTCGGTGGCGACTCCCATT
196 GACCTAAAATTATTTTCAGGGTGATCCGATCGCACCATAATAAAAGGTCGGTGGCGACTCCCATT
*
14866641 TTC-TTTCTAAAAGTCGATCCCCCATTTTTCAAACTTGAAAAAATGGTTTCGACAGCT
261 TTCATTT-TAAAAGTCGATCCCCCATTTTTCAAACATGAAAAAATGGTTTCGACAGCT
14866698 T
1 T
14866699 GGCGACTCCG
Statistics
Matches: 304, Mismatches: 13, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
316 3 0.01
317 301 0.99
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.32
Consensus pattern (317 bp):
TTTGAAATAGGTCCATCTATTCAACCAATGCCATTATTTAAGCTTGCATTTCAAAGGATTGTATT
TTAAAATCTTTTCAAACTTTCAGCATTAAGACATTAGACAATCAATTCGGTACCAATTTTGGGCG
TCACGAGGGTGCTAACCCTTCATCGTGCATAACCAACTCCCGAACCTATTTTCTCAAAACTCGCA
GACCTAAAATTATTTTCAGGGTGATCCGATCGCACCATAATAAAAGGTCGGTGGCGACTCCCATT
TTCATTTTAAAAGTCGATCCCCCATTTTTCAAACATGAAAAAATGGTTTCGACAGCT
Found at i:14870368 original size:49 final size:49
Alignment explanation
Indices: 14870291--14870867 Score: 986
Period size: 47 Copynumber: 12.1 Consensus size: 49
14870281 GAAATGATAG
14870291 TAAGG-CTAATGGCCGAT-TGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
14870338 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
14870385 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
14870434 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
14870483 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
14870530 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
14870579 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
14870626 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
14870675 TAAGGCC-AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
14870723 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
14870770 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
* * * * * * *
14870817 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATA-A-ATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
14870864 TAAG
1 TAAG
14870868 TCCCGAAGGG
Statistics
Matches: 510, Mismatches: 9, Indels: 22
0.94 0.02 0.04
Matches are distributed among these distances:
47 241 0.47
48 61 0.12
49 208 0.41
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (49 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
Found at i:14870453 original size:96 final size:95
Alignment explanation
Indices: 14870291--14870867 Score: 959
Period size: 96 Copynumber: 6.0 Consensus size: 95
14870281 GAAATGATAG
14870291 TAAGG-CTAATGGCCGAT-TGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
14870354 ATGTGATGAATGTGAAAGTG-TATATATGTGA
64 ATGTGATGAATGTGAAAGTGATATATATGTGA
14870385 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
14870450 ATGTGATGAATGTGAAAGTGTATATATATGTGA
64 ATGTGATGAATGTGAAAGTG-ATATATATGTGA
14870483 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
14870548 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG-ATATATATGTGA
14870579 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
14870644 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG-ATATATATGTGA
14870675 TAAGGCC-AATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
14870739 ATGTGATGAATGTGAAAGTG-TATATATGTGA
64 ATGTGATGAATGTGAAAGTGATATATATGTGA
* * * * * *
14870770 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* *
14870835 GTGATGGATGTGAAAGTG-TATAAATGTGA
66 GTGATGAATGTGAAAGTGATATATATGTGA
14870864 TAAG
1 TAAG
14870868 TCCCGAAGGG
Statistics
Matches: 468, Mismatches: 8, Indels: 14
0.96 0.02 0.03
Matches are distributed among these distances:
94 59 0.13
95 58 0.12
96 257 0.55
97 47 0.10
98 47 0.10
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (95 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGATATATATGTGA
Found at i:14872292 original size:39 final size:39
Alignment explanation
Indices: 14872247--14872584 Score: 507
Period size: 39 Copynumber: 8.6 Consensus size: 39
14872237 AGAGTGAATG
*
14872247 TCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTA
14872286 TCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGATGTA
*
14872326 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGATGTA
*
14872366 TCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTA
14872405 TCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTA
14872444 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTG-TGTA
1 TCCGGGCTAAGTC-CGAAGAGCATTCGTGCTAGTGATGTA
* *
14872483 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * * *
14872523 TCCGTGCTAACCCCGAAGAGCATTTGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTA
*
14872562 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGT-CCGAAGAGCA
14872585 ATCATGCTGG
Statistics
Matches: 278, Mismatches: 16, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
39 157 0.56
40 121 0.44
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:14872396 original size:79 final size:79
Alignment explanation
Indices: 14872247--14872597 Score: 519
Period size: 79 Copynumber: 4.5 Consensus size: 79
14872237 AGAGTGAATG
14872247 TCCGGGCTAAG-TCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAG-TCCGAAGAGCATT
14872311 CGTGCTAGTGATGTA
65 CGTGCTAGTGATGTA
14872326 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
*
14872391 ATGCTAGTGATGTA
66 GTGCTAGTGATGTA
*
14872405 TCCGGGCTAAG-TCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATT
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTC-CGAAGAGCATT
14872469 CGTGCTAGTG-TGTA
65 CGTGCTAGTGATGTA
* * * * ** *
14872483 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAACCCCGAAGAGCATTT
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
* * *
14872548 GTGCTGGTGTTATA
66 GTGCTAGTGATGTA
* * * *
14872562 TCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA
14872598 CGTGTATTCG
Statistics
Matches: 251, Mismatches: 17, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
78 73 0.29
79 139 0.55
80 39 0.16
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
GTGCTAGTGATGTA
Found at i:14872462 original size:118 final size:118
Alignment explanation
Indices: 14872247--14872597 Score: 526
Period size: 118 Copynumber: 3.0 Consensus size: 118
14872237 AGAGTGAATG
14872247 TCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTC
1 TCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAG-TCCGAAGAGCATTC
14872312 GTGCTAGTGATGTATCCGGGCTAAGT-TCCGAAGAGCATTCATGCTAGTGATGTA
65 GTGCTAGTGATGTATCCGGGCTAAGTCT-CGAAGAGCATTCATGCTAGTGATGTA
14872366 TCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCG
1 TCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCG
*
14872431 TGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTG-TGTA
66 TGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGTA
* * * * ** *
14872483 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAACCCCGAAGAGCATTT
1 TCCGGGCTAAG-TCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
* * * * * * *
14872548 GTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
65 GTGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGA
14872598 CGTGTATTCG
Statistics
Matches: 213, Mismatches: 16, Indels: 6
0.91 0.07 0.03
Matches are distributed among these distances:
117 14 0.07
118 148 0.69
119 51 0.24
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (118 bp):
TCCGGGCTAAGTCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCG
TGCTAGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCATGCTAGTGATGTA
Found at i:14876439 original size:96 final size:94
Alignment explanation
Indices: 14876240--14876800 Score: 904
Period size: 96 Copynumber: 6.0 Consensus size: 94
14876230 TGATAGTAGG
*
14876240 CTAATGGCCGATGTGATG-ATGTG-AAGTGTATATATAGTGATAAGG-CTAATGG-TGATGTGAT
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT-GTGATAAGGCCTAATGGCCGATGTGAT
14876301 GAATGTGAAAGTGTATATAT-TGATAAGGC
65 GAATGTGAAAGTGTATATATGTGATAAGGC
14876330 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 CTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGA
14876395 TGAATGTGAAAGTGTATATATGTGATAAGGC
64 TGAATGTGAAAGTGTATATATGTGATAAGGC
14876426 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
14876491 AATGTGAAAGTGTATATATATGTGATAAGGC
66 AATGTGAAAGTG--TATATATGTGATAAGGC
14876522 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-CTAATGGCCGATGTGATG
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
14876586 AATGTGAAAATGTATATATATGTGATAAGGC
66 AATGTG-AAA-GTGTATATATGTGATAAGGC
14876617 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
14876682 AATGTGAAAGTGTATATATGTGATAAGGC
66 AATGTGAAAGTGTATATATGTGATAAGGC
* * * * *
14876711 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-AGGGCCGAGTGGCCAACGTGATG
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * *
14876775 GATATG-ATGTGTATAAATGTGATAAG
66 AATGTGAAAGTGTATATATGTGATAAG
14876801 TCCCGAAGGG
Statistics
Matches: 447, Mismatches: 12, Indels: 22
0.93 0.02 0.05
Matches are distributed among these distances:
90 18 0.04
91 5 0.01
92 23 0.05
93 31 0.07
94 121 0.27
95 118 0.26
96 129 0.29
97 2 0.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
AATGTGAAAGTGTATATATGTGATAAGGC
Found at i:14876711 original size:238 final size:235
Alignment explanation
Indices: 14876240--14876751 Score: 942
Period size: 238 Copynumber: 2.2 Consensus size: 235
14876230 TGATAGTAGG
*
14876240 CTAATGGCCGATGTGATG-ATGTG-AAGTGTATATATAGTGATAAGGCTAATGGTGATGTGATGA
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGTGATAAGGCTAATGGCGATGTGATGA
*
14876303 ATGTGAAAGTGTATATATTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
66 ATGTGAAAGTGTATATATTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATA
14876368 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
131 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
14876433 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
196 CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
14876473 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA-GTGATAAGG-CTAATGG-CGATGTGA
14876538 TGAATGTGAAAGTGTATATATGTGATAAGG-CTAATGGCCGATGTGATGAATGTGAAAATGTATA
63 TGAATGTGAAAGTGTATATAT-TGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATA
14876602 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
127 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
14876667 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
192 ATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
14876711 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT-GTGA
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGTGA
14876752 AGGGCCGAGT
Statistics
Matches: 271, Mismatches: 2, Indels: 9
0.96 0.01 0.03
Matches are distributed among these distances:
233 18 0.07
234 5 0.02
235 13 0.05
236 13 0.05
237 7 0.03
238 207 0.76
239 8 0.03
ACGTcount: A:0.32, C:0.08, G:0.29, T:0.31
Consensus pattern (235 bp):
CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATAGTGATAAGGCTAATGGCGATGTGATGA
ATGTGAAAGTGTATATATTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAATGTATATATA
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGG
CCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
Found at i:14876788 original size:45 final size:47
Alignment explanation
Indices: 14876240--14876800 Score: 904
Period size: 47 Copynumber: 12.0 Consensus size: 47
14876230 TGATAGTAGG
14876240 CTAATGGCCGATGTGATG-ATGTG-AAGTGTATATATAGTGATAAGG-
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATAT-GTGATAAGGC
*
14876285 CTAATGG-TGATGTGATGAATGTGAAAGTGTATATAT-TGATAAGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
14876330 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
14876379 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
14876426 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
14876473 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
14876522 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGG-
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
*
14876568 CTAATGGCCGATGTGATGAATGTGAAAATGTATATATATGTGATAAGGC
1 CTAATGGCCGATGTGATGAATGTG-AAA-GTGTATATATGTGATAAGGC
14876617 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
14876664 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
*
14876711 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-AGGGC
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
* * * * * * * *
14876757 CGAGTGGCCAACGTGATGGATATG-ATGTGTATAAATGTGATAAG
1 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
14876801 TCCCGAAGGG
Statistics
Matches: 489, Mismatches: 14, Indels: 25
0.93 0.03 0.05
Matches are distributed among these distances:
44 17 0.03
45 33 0.07
46 81 0.17
47 220 0.45
48 28 0.06
49 110 0.22
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGC
Found at i:14878953 original size:39 final size:39
Alignment explanation
Indices: 14878853--14879042 Score: 167
Period size: 39 Copynumber: 4.9 Consensus size: 39
14878843 CTATGTCATC
*
14878853 GCTAGTGATGTATCCGGGCTAAGTCCCGA-AGACATTTC-T
1 GCTAGTGATGTATCCGGGCTAAGTCTCGAGAG-CA-TTCGT
14878892 GCTAGTGA-GTATCCGGGCTAAGTCTCGAGAGCATTCGT
1 GCTAGTGATGTATCCGGGCTAAGTCTCGAGAGCATTCGT
* *
14878930 GCTAGTGGTGTATCCGGCCTAAGTTCTCGAAGAGC--TCGT
1 GCTAGTGATGTATCCGGGCTAAG-TCTCG-AGAGCATTCGT
* * * * *
14878969 GCTAGTGATATATCCGTGCTAA-ACCCGAAGAGCATTTGT
1 GCTAGTGATGTATCCGGGCTAAGTCTCG-AGAGCATTCGT
* * * * *
14879008 GCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GCTAGTGATGTATCCGGGCTAAGTCTCG-AGAGCA
14879043 ATCAATGCTG
Statistics
Matches: 128, Mismatches: 15, Indels: 15
0.81 0.09 0.09
Matches are distributed among these distances:
37 12 0.09
38 29 0.23
39 66 0.52
40 16 0.12
41 5 0.04
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (39 bp):
GCTAGTGATGTATCCGGGCTAAGTCTCGAGAGCATTCGT
Found at i:14883230 original size:47 final size:47
Alignment explanation
Indices: 14883130--14883698 Score: 978
Period size: 47 Copynumber: 11.9 Consensus size: 47
14883120 TAGTATGGCG
14883130 TAATGG-CGATTGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGA-TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
14883179 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
14883226 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
14883273 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
14883320 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
14883367 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
14883416 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
14883463 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
14883512 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCC
14883561 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* *
14883608 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCC
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * *
14883655 GAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
14883699 TCCCGAAGGG
Statistics
Matches: 505, Mismatches: 10, Indels: 12
0.96 0.02 0.02
Matches are distributed among these distances:
47 334 0.66
49 168 0.33
50 3 0.01
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:14883308 original size:96 final size:94
Alignment explanation
Indices: 14883130--14883698 Score: 978
Period size: 96 Copynumber: 6.0 Consensus size: 94
14883120 TAGTATGGCG
14883130 TAATGG-CGATTGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGA
1 TAATGGCCGA-TGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGA
14883194 TGAATGTGAAAGTGTATATATGTGATAAGGCC
63 TGAATGTGAAAGTGTATATATGTGATAAGGCC
14883226 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
14883291 ATGTGAAAGTGTATATATGTGATAAGGCC
66 ATGTGAAAGTGTATATATGTGATAAGGCC
14883320 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
14883385 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTG--TATATATGTGATAAGGCC
14883416 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
14883481 ATGTGAAAGTGTATATATATGTGATAAGGCC
66 ATGTGAAAGTG--TATATATGTGATAAGGCC
14883512 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 TAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGAT
14883577 GAATGTGAAAGTGTATATATGTGATAAGGCC
64 GAATGTGAAAGTGTATATATGTGATAAGGCC
* * * * * * *
14883608 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
14883673 ATGTGAAAGTGTATAAATGTGATAAG
66 ATGTGAAAGTGTATATATGTGATAAG
14883699 TCCCGAAGGG
Statistics
Matches: 460, Mismatches: 8, Indels: 12
0.96 0.02 0.03
Matches are distributed among these distances:
94 195 0.42
96 215 0.47
97 3 0.01
98 47 0.10
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (94 bp):
TAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
ATGTGAAAGTGTATATATGTGATAAGGCC
Found at i:14885279 original size:119 final size:118
Alignment explanation
Indices: 14885080--14885430 Score: 494
Period size: 119 Copynumber: 3.0 Consensus size: 118
14885070 GAGTGAAATG
14885080 TCCGGGCTAAGTCCCGAAGAGCA-T-TGCTAGTGATGTATCC-GGCTAAGTTCCGAAGAGCATTC
1 TCCGGGCTAAGTCCCGAAGAGCATTCTGCTAGTGATGTATCCGGGCTAAG-TCCGAAGAGCATTC
14885142 GTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
65 GTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
14885196 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
1 TCCGGGCTAAGTCCCGAAGAGCATTC-TGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTC
*
14885261 GTGCTAGTGATGTATCCGGGCTAAG-TCTCGAAGAGCATTCGTGCTAGTGATGTA
65 GTGCTAGTGATGTATCCGGGCTAAGTTC-CGAAGAGCATTCATGCTAGTGATGTA
* * * * **
14885315 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAACCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTC-TGCTAGTGATGTATCCGGGCT-AAGTCCGAAGAGCATT
* * * * * * * *
14885380 TGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
64 CGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGA
14885431 CGTGTATTCG
Statistics
Matches: 211, Mismatches: 17, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
116 23 0.11
117 1 0.00
118 2 0.01
119 123 0.58
120 61 0.29
121 1 0.00
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (118 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCTGCTAGTGATGTATCCGGGCTAAGTCCGAAGAGCATTCG
TGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
Found at i:14885429 original size:40 final size:40
Alignment explanation
Indices: 14885080--14885417 Score: 497
Period size: 40 Copynumber: 8.6 Consensus size: 40
14885070 GAGTGAAATG
14885080 TCCGGGCTAAGTCCCGAAGAGCA-T--TGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
14885117 TCC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
14885156 TCCGGGCTAAGTTCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
14885196 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
14885236 TCCGGGCTAAGT-CCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
14885275 TCCGGGCTAAGTCTCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* * *
14885315 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* ** * * * *
14885355 TCCGTGCTAAACCCCGAAGAGCATTTGTGCTGGTGTTATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
14885395 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
14885418 ATCATGCTGG
Statistics
Matches: 275, Mismatches: 21, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
36 18 0.07
37 4 0.01
39 54 0.20
40 199 0.72
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:14889201 original size:47 final size:47
Alignment explanation
Indices: 14889086--14889660 Score: 970
Period size: 47 Copynumber: 12.1 Consensus size: 47
14889076 GAAATGATAG
14889086 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
14889135 TAAGGCCTAATGGCTGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14889182 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
14889231 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14889278 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14889325 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
14889374 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
14889421 TAAGGCCTAATGGCCGATGTGATGAATGTGAAATGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAA-GTGTATATATGTGA
14889469 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14889516 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14889563 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * * *
14889610 CAGGGCCGAGTGGCCAACGTGATGGATATGAATGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
14889657 TAAG
1 TAAG
14889661 TCCCGAAGGG
Statistics
Matches: 503, Mismatches: 18, Indels: 12
0.94 0.03 0.02
Matches are distributed among these distances:
47 329 0.65
48 46 0.09
49 128 0.25
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:14889250 original size:96 final size:94
Alignment explanation
Indices: 14889086--14889660 Score: 970
Period size: 96 Copynumber: 6.0 Consensus size: 94
14889076 GAAATGATAG
*
14889086 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
14889151 ATGTGATGAATGTGAAAGTGTATATATGTGA
64 ATGTGATGAATGTGAAAGTGTATATATGTGA
*
14889182 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
14889247 ATGTGATGAATGTGAAAGTGTATATATGTGA
64 ATGTGATGAATGTGAAAGTGTATATATGTGA
14889278 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
14889343 GTGATGAATGTGAAAGTGTATATATATGTGA
66 GTGATGAATGTGAAAGTG--TATATATGTGA
14889374 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
14889439 GTGATGAATGTGAAATGTATATATATGTGA
66 GTGATGAATGTGAAA-GTGTATATATGTGA
14889469 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
14889534 GTGATGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
* * * * * *
14889563 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAAC
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * *
14889628 GTGATGGATATGAATGTGTATAAATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
14889657 TAAG
1 TAAG
14889661 TCCCGAAGGG
Statistics
Matches: 461, Mismatches: 15, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
94 148 0.32
95 91 0.20
96 220 0.48
97 2 0.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:14889346 original size:143 final size:143
Alignment explanation
Indices: 14889086--14889660 Score: 987
Period size: 143 Copynumber: 4.0 Consensus size: 143
14889076 GAAATGATAG
*
14889086 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCTG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
14889151 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAG
64 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
14889216 TGTATATATATGTGA
129 TGTATATATATGTGA
14889231 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
14889296 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
14889361 TATATATATGTGA
131 TATATATATGTGA
14889374 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
14889439 GTGATGAATGTGAAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
66 GTGATGAATGTGAAA-GTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGT
14889504 G--TATATATGTGA
130 GTATATATATGTGA
14889516 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
* * * * * * * * *
14889581 GTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATATGAATGTG
66 GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
14889646 TATA-A-ATGTGA
131 TATATATATGTGA
14889657 TAAG
1 TAAG
14889661 TCCCGAAGGG
Statistics
Matches: 414, Mismatches: 13, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
141 50 0.12
142 92 0.22
143 187 0.45
144 49 0.12
145 36 0.09
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.30
Consensus pattern (143 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
TATATATATGTGA
Found at i:14894869 original size:53 final size:57
Alignment explanation
Indices: 14894771--14894886 Score: 152
Period size: 55 Copynumber: 2.1 Consensus size: 57
14894761 GATCCAATTC
*
14894771 AAAAAAAATGAAAAATCAAGAATCAAAAATCAAAATAAAATGAGAG-A-AAAAAAAG
1 AAAAAAAATGAAAAATCAAGAATCAAAAATCAAAATAAAAAGAGAGAAGAAAAAAAG
* * *
14894826 AAAAAAAAT-CAAAATCAA-AGTC-AAAATGAAAATGAAAAAGAGAGAAGAAAAAAAG
1 AAAAAAAATGAAAAATCAAGAATCAAAAATCAAAAT-AAAAAGAGAGAAGAAAAAAAG
14894881 AAAAAA
1 AAAAAA
14894887 GGAAAAATGA
Statistics
Matches: 54, Mismatches: 4, Indels: 6
0.84 0.06 0.09
Matches are distributed among these distances:
52 10 0.19
53 12 0.22
54 9 0.17
55 23 0.43
ACGTcount: A:0.73, C:0.05, G:0.12, T:0.09
Consensus pattern (57 bp):
AAAAAAAATGAAAAATCAAGAATCAAAAATCAAAATAAAAAGAGAGAAGAAAAAAAG
Found at i:14894880 original size:55 final size:55
Alignment explanation
Indices: 14894771--14894894 Score: 148
Period size: 53 Copynumber: 2.3 Consensus size: 55
14894761 GATCCAATTC
*
14894771 AAAAAAAATGAAAAATCAAGAATCAAAAATCAAAATAAAATGAGAGAAAAAAAAG
1 AAAAAAAATGAAAAATCAAGAATCAAAAATCAAAATAAAAAGAGAGAAAAAAAAG
* * *
14894826 AAAAAAAAT-CAAAATCAA-AGTC-AAAATGAAAATGAAAAAGAGAGAAGAAAAAA-
1 AAAAAAAATGAAAAATCAAGAATCAAAAATCAAAAT-AAAAAGAGAGAA-AAAAAAG
* *
14894879 AGAAAAAAGGAAAAAT
1 AAAAAAAATGAAAAAT
14894895 GAGAGGCCAA
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
52 10 0.17
53 21 0.36
54 19 0.32
55 9 0.15
ACGTcount: A:0.73, C:0.05, G:0.13, T:0.10
Consensus pattern (55 bp):
AAAAAAAATGAAAAATCAAGAATCAAAAATCAAAATAAAAAGAGAGAAAAAAAAG
Found at i:14897450 original size:87 final size:87
Alignment explanation
Indices: 14897011--14897433 Score: 675
Period size: 87 Copynumber: 4.9 Consensus size: 87
14897001 AGATTAGTGA
* * * *
14897011 AGATCGAAAACAAAGCCTTGCCTCCATCGATTATAGTGGAGTTGGTTAAAAATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
14897076 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * * * *
14897098 AGATCGAAAACGAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAGCAGATATTGT
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
14897163 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* *
14897185 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATCGTAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
14897250 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * *
14897272 AGATCAAAAACAAAGCCTTGGCTCCATCGGGTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
14897337 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCGTTAACAGCGAAGC
* * * *
14897359 AGATCGAAAACAAAACCTTGCCTCCATCGGTTGCAGTAGAGCTGGTTAAAGATAGCATATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
*
14897424 CCTCCTGCGT
66 CTTCCTGCGT
14897434 CGACAGTAAA
Statistics
Matches: 307, Mismatches: 29, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
87 307 1.00
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.25
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCGTTAACAGCGAAGC
Found at i:14897804 original size:130 final size:131
Alignment explanation
Indices: 14897457--14897765 Score: 539
Period size: 131 Copynumber: 2.4 Consensus size: 131
14897447 GATCAAAGAG
* * *
14897457 CACAAGTCCTATGTCCCTGACTAGCAGTGGAATAGGTTGGAAATTGCAGACCTTGTCTCCCTGAG
1 CACAAGTCATATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTACAGACCTTGTCTCCCTGAG
14897522 CAGCAGCGGAGTAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTTAAG
66 CAGCAGCGGAGTAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTTAAG
14897587 C
131 C
* *
14897588 CACAAGTGATATGTCCCTAACCAGCAGTGGAATAGGTTGGAAATTACAGACCTTGTCTCCCTGAG
1 CACAAGTCATATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTACAGACCTTGTCTCCCTGAG
*
14897653 CAGCAGCGGAGTAGATCGAAGACGGCGAATCTTATCTT-CCCAGGAGTAGGGAAACAGATTTAAG
66 CAGCAGCGGAGTAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTTAAG
14897717 C
131 C
* *
14897718 CACAAGTCTTATGTCCCTGACCAGCAGTGGAATAAGTTGGAAATTACA
1 CACAAGTCATATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTACA
14897766 AGTCTTATCT
Statistics
Matches: 168, Mismatches: 10, Indels: 1
0.94 0.06 0.01
Matches are distributed among these distances:
130 70 0.42
131 98 0.58
ACGTcount: A:0.30, C:0.22, G:0.25, T:0.22
Consensus pattern (131 bp):
CACAAGTCATATGTCCCTGACCAGCAGTGGAATAGGTTGGAAATTACAGACCTTGTCTCCCTGAG
CAGCAGCGGAGTAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTTAAG
C
Found at i:14897862 original size:44 final size:44
Alignment explanation
Indices: 14897814--14898407 Score: 213
Period size: 44 Copynumber: 13.7 Consensus size: 44
14897804 AAATCAATCC
* *
14897814 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACAATAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAATAGATCT
* * * * *
14897858 TATCTCCCT-AAG-CAGTAGTGGAGCAGA-T--CAC-GTCAGGTCT
1 TATCTCCCTGAAGTTA-CAGTGGAGCAGATTAAAACAAT-AGATCT
* * * * *
14897898 TATCTTCCTGAAGTTGCAGCGGTGCAGACTGAGAAA-ACA-AG-TCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGA-TTA-AAACA-ATAGATCT
* * * * * * * ** *
14897942 TATCCCCCTAAAGTCATAGTGGGGCTGACTAAAGA-AGCAAATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAA-ACAATAGATCT
* * * ** * *
14897986 TATCTCCCTGAGGTTGCAGTGGAGTAGATTGAATTCGATA-ATCC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATT-AAAACAATAGATCT
** * **
14898030 TATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAATAGATCT
* * ** *
14898074 TATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCAATA-ATCC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATT-AAAACAATAGATCT
* ** * ** **
14898118 TATCTTCCTGAAGTTGTAGTTGAGTGGATTAAAGTAATAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAATAGATCT
* * * * ** *
14898162 TATCTCTCTAAAGTTACAGTAGAGTAGA-T--CGC-ATCAGGTCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAT-AGATCT
* * ** * **
14898203 TATCTCTCTGAGGTTAC-GTGGAGTTGACTGAAGAA-TTTCAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGA-TTAA-AACAAT-AGATCT
* * * * * *
14898248 TATCTCCCTGAGGTTACAGTAGAGCAGATTGAAGCCAGAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAATAGATCT
* * * *
14898292 TATCTCCCTG-AGATTACAGTGGAGCAGATCGAAGACACTA-TTC-
1 TATCTCCCTGAAG-TTACAGTGGAGCAGAT-TAAAACAATAGATCT
* ** *
14898335 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAGTATTAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAATAGATCT
* * *
14898379 TATCTCTCTGAAGTTACAGTAGAGTAGAT
1 TATCTCCCTGAAGTTACAGTGGAGCAGAT
14898408 GGCATCAGGT
Statistics
Matches: 396, Mismatches: 121, Indels: 66
0.68 0.21 0.11
Matches are distributed among these distances:
39 1 0.00
40 25 0.06
41 33 0.08
42 8 0.02
43 57 0.14
44 225 0.57
45 39 0.10
46 8 0.02
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAATAGATCT
Found at i:14898063 original size:88 final size:88
Alignment explanation
Indices: 14897809--14898167 Score: 291
Period size: 88 Copynumber: 4.1 Consensus size: 88
14897799 AGAAGAAATC
* * * ** * **
14897809 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATT-AAAACAATAGATCTTATCTCCCT-AAGCA
1 AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCAATA-ATCCTATCTCCCTGAAGTT
* * *
14897872 GTAGTGGAGCAGA-TCACGT--CA
65 GTAGTGGAGCGGATTAAAGTAACA
** * * * * * ** * * * * *
14897893 GGTCTTATCTTCCTGAAGTTGCAGCGGTGCAGACTG-AGAAAACAAGTCTTATCCCCCTAAAGTC
1 AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCAATAA-TCCTATCTCCCTGAAGTT
* * * *
14897957 ATAGTGGGGCTGACTAAAG-AAGCA
65 GTAGTGGAGCGGATTAAAGTAA-CA
* * *
14897981 AATCTTATCTCCCTGAGGTTGCAGTGGAGTAGATTGAATTCGATAATCCTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCAATAATCCTATCTCCCTGAAGTTG
*
14898046 TAGTGGAGCGGATTAAAGTAATA
66 TAGTGGAGCGGATTAAAGTAACA
* *
14898069 GATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCAATAATCCTATCTTCCTGAAGTTG
1 AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCAATAATCCTATCTCCCTGAAGTTG
* * *
14898134 TAGTTGAGTGGATTAAAGTAATA
66 TAGTGGAGCGGATTAAAGTAACA
*
14898157 GATCTTATCTC
1 AATCTTATCTC
14898168 TCTAAAGTTA
Statistics
Matches: 218, Mismatches: 48, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
83 1 0.00
84 43 0.20
85 13 0.06
86 3 0.01
88 152 0.70
89 6 0.03
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (88 bp):
AATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCAATAATCCTATCTCCCTGAAGTTG
TAGTGGAGCGGATTAAAGTAACA
Found at i:14898351 original size:87 final size:87
Alignment explanation
Indices: 14898248--14898407 Score: 207
Period size: 87 Copynumber: 1.8 Consensus size: 87
14898238 TTTCAGATCT
* *
14898248 TATCTCCCTGAGGTTACAGTAGAGCAGATTGAAGCCA-GAGATCTTATCTCCCTG-AGATTACAG
1 TATCTCCCTGAAGTTACAGTAGAGCAGATTAAAG-CATGAGATCTTATCTCCCTGAAG-TTACAG
*
14898311 TGGAGCAGATCGAAGACACTATTC
64 TAGAGCAGATCGAAGACACTATTC
* * * * *
14898335 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAGTATTAGATCTTATCTCTCTGAAGTTACAGTA
1 TATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCATGAGATCTTATCTCCCTGAAGTTACAGTA
*
14898400 GAGTAGAT
66 GAGCAGAT
14898408 GGCATCAGGT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
86 1 0.02
87 59 0.95
88 2 0.03
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (87 bp):
TATCTCCCTGAAGTTACAGTAGAGCAGATTAAAGCATGAGATCTTATCTCCCTGAAGTTACAGTA
GAGCAGATCGAAGACACTATTC
Found at i:14898353 original size:43 final size:44
Alignment explanation
Indices: 14897814--14898499 Score: 197
Period size: 44 Copynumber: 15.8 Consensus size: 44
14897804 AAATCAATCC
* * * * *
14897814 TATCTCCCTGAAGTTGCAGTGGAGCGGAT-TAAAACAATAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGAC-AGAGATCT
* * * *
14897858 TATCTCCCT-AAG-CAGTAGTGGAGCAGATC-ACGTCAG-G-TCT
1 TATCTCCCTGAAGTTA-CAGTGGAGCAGATCGAAGACAGAGATCT
* * * * * *
14897898 TATCTTCCTGAAGTTGCAGCGGTGCAGACTGAGAAAACA-AG-TCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGA-T-CGAAGACAGAGATCT
* * * * * * * *
14897942 TATCCCCCTAAAGTCATAGTGGGGCTGA-CTAAAGA-AGCAAATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATC-GAAGACAG-AGATCT
* * * * ** * *
14897986 TATCTCCCTGAGGTTGCAGTGGAGTAGATTGAATTC-GATAATCC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAGA-GATCT
** * ** *
14898030 TATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTA-ATAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATCGAAG-ACAGAGATCT
* * * * * *
14898074 TATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCA-ATAATCC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAGA-GATCT
* ** * ** ** *
14898118 TATCTTCCTGAAGTTGTAGTTGAGTGGATTAAAGTA-ATAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATCGAAG-ACAGAGATCT
* * * * * *
14898162 TATCTCTCTAAAGTTACAGTAGAGTAGATCGCA-TCAG-G-TCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAGAGATCT
* * ** *
14898203 TATCTCTCTGAGGTTAC-GTGGAGTTGA-CTGAAGA-ATTTCAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATC-GAAGACA---GAGATCT
* * * *
14898248 TATCTCCCTGAGGTTACAGTAGAGCAGATTGAAGCCAGAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAGAGATCT
**
14898292 TATCTCCCTG-AGATTACAGTGGAGCAGATCGAAGACA-CTAT-T
1 TATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGACAGAGATCT
* ** **
14898334 CTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAGTA-TTAGATCT
1 -TATCTCCCTGAAGTTACAGTGGAGCAGATCGAAG-ACAGAGATCT
* * * * * * *
14898379 TATCTCTCTGAAGTTACAGTAGAGTAGATGGCA-TCAG-G-TTT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAGAGATCT
* ** * *
14898420 TATCTCCCTGAGGTTACAGTGGAGTGGACCGAAGAATAGTAGATCT
1 TATCTCCCTGAAGTTACAGTGGAGCAGATCGAAG-ACAG-AGATCT
* *
14898466 TATCTCCCT-AAG-CAGTAGTGGAGCAGATCGAAGA
1 TATCTCCCTGAAGTTA-CAGTGGAGCAGATCGAAGA
14898500 TAGCAAATTT
Statistics
Matches: 460, Mismatches: 137, Indels: 90
0.67 0.20 0.13
Matches are distributed among these distances:
39 1 0.00
40 22 0.05
41 60 0.13
42 8 0.02
43 53 0.12
44 254 0.55
45 39 0.08
46 22 0.05
47 1 0.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (44 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGACAGAGATCT
Found at i:14898378 original size:217 final size:219
Alignment explanation
Indices: 14898068--14898474 Score: 613
Period size: 217 Copynumber: 1.9 Consensus size: 219
14898058 TTAAAGTAAT
* * * * *
14898068 AGATCTTATCTCCCTGAGGTTGCAGTGGAGCAGATTGAAGTCAATAATCCTATCTTCCTGAAGTT
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACAATAATCCTATCTCCCTGAAGTT
** * *
14898133 GTAGTTGAGTGGATTAAAGTAATAGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCA
66 ACAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCA
* * * *
14898198 GGTCTTATCTCTCTGAGGTTAC-GTGGAGTTGACTGAAGAAT-TTCAGATCTTATCTCCCTGAGG
131 GGTCTTATCTCCCTGAGGTTACAGTGGAGTGGACCGAAGAATAGT-AGATCTTATCTCCCTGAGG
14898261 TTACAGTAGAGCAGATTGAAGCCAG
195 TTACAGTAGAGCAGATTGAAGCCAG
* *
14898286 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACACT-ATTCTATCTCCCTGAAGTT
1 AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACAATAATCCTATCTCCCTGAAGTT
* * *
14898350 ACAGTGGAGCGGATTAAAGTATTAGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATGGCATCA
66 ACAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCA
*
14898415 GGTTTTATCTCCCTGAGGTTACAGTGGAGTGGACCGAAGAATAGTAGATCTTATCTCCCT
131 GGTCTTATCTCCCTGAGGTTACAGTGGAGTGGACCGAAGAATAGTAGATCTTATCTCCCT
14898475 AAGCAGTAGT
Statistics
Matches: 168, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
217 95 0.57
218 72 0.43
219 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (219 bp):
AGATCTTATCTCCCTGAGATTACAGTGGAGCAGATCGAAGACAATAATCCTATCTCCCTGAAGTT
ACAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCA
GGTCTTATCTCCCTGAGGTTACAGTGGAGTGGACCGAAGAATAGTAGATCTTATCTCCCTGAGGT
TACAGTAGAGCAGATTGAAGCCAG
Found at i:14898492 original size:217 final size:215
Alignment explanation
Indices: 14898030--14898498 Score: 591
Period size: 217 Copynumber: 2.1 Consensus size: 215
14898020 TCGATAATCC
* * * * * *
14898030 TATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAGTAATAGATCTTATCTCCCTGAGGTTGCAGTG
1 TATCTCCCT-AAG--GTAGTGGAGCAGATTGAAGCAAGAGATCTTATCTCCCTGAGATTACAGTG
* * * ** * *
14898095 GAGCAGATTGAAGTCAATAATCCTATCTTCCTGAAGTTGTAGTTGAGTGGATTAAAGTAATAGAT
63 GAGCAGATCGAAGACAATAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAGTAATAGAT
*
14898160 CTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCTCTGAGGTTACGTGGA
128 CTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACGTGGA
* * *
14898225 GTTGACTGAAGAATTTCAGATCT
193 GTGGACCGAAGAATGTCAGATCT
* * *
14898248 TATCTCCCTGAGGTTACAGTAGAGCAGATTGAAGCCAGAGATCTTATCTCCCTGAGATTACAGTG
1 TATCTCCCTAAGG-T--AGTGGAGCAGATTGAAGCAAGAGATCTTATCTCCCTGAGATTACAGTG
* * *
14898313 GAGCAGATCGAAGACACT-ATTCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAGTATTAGAT
63 GAGCAGATCGAAGACAATAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAGTAATAGAT
* * *
14898377 CTTATCTCTCTGAAGTTACAGTAGAGTAGATGGCATCAGGTTTTATCTCCCTGAGGTTACAGTGG
128 CTTATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTAC-GTGG
14898442 AGTGGACCGAAGAATAGT-AGATCT
192 AGTGGACCGAAGAAT-GTCAGATCT
*
14898466 TATCTCCCTAAGCAGTAGTGGAGCAGATCGAAG
1 TATCTCCCTAAG--GTAGTGGAGCAGATTGAAG
14898499 ATAGCAAATT
Statistics
Matches: 215, Mismatches: 29, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
215 1 0.00
216 1 0.00
217 112 0.52
218 98 0.46
219 2 0.01
220 1 0.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (215 bp):
TATCTCCCTAAGGTAGTGGAGCAGATTGAAGCAAGAGATCTTATCTCCCTGAGATTACAGTGGAG
CAGATCGAAGACAATAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAGTAATAGATCTT
ATCTCTCTAAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGGTTACGTGGAGTG
GACCGAAGAATGTCAGATCT
Found at i:14900593 original size:19 final size:20
Alignment explanation
Indices: 14900547--14900593 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 20
14900537 TTTAATTATA
* *
14900547 ATATTTATTTTTTTATTTGG
1 ATATTTATTATTTCATTTGG
*
14900567 ATA-CTATTATTTCATTT-G
1 ATATTTATTATTTCATTTGG
14900585 ATATTTATT
1 ATATTTATT
14900594 TTTAACTATA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
18 4 0.18
19 15 0.68
20 3 0.14
ACGTcount: A:0.26, C:0.04, G:0.06, T:0.64
Consensus pattern (20 bp):
ATATTTATTATTTCATTTGG
Found at i:14905139 original size:26 final size:26
Alignment explanation
Indices: 14905099--14905149 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14905089 TAACCTAGTT
* *
14905099 CTCAGTTGTCTCCAAAGATCACTTTG
1 CTCAGTTATCACCAAAGATCACTTTG
*
14905125 CTCAGTTATCACCAAAGATTACTTT
1 CTCAGTTATCACCAAAGATCACTTT
14905150 ATGAATAGTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.25, G:0.12, T:0.35
Consensus pattern (26 bp):
CTCAGTTATCACCAAAGATCACTTTG
Found at i:14905481 original size:38 final size:38
Alignment explanation
Indices: 14905437--14905512 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
14905427 TTTTTGTAAG
**
14905437 ATAGTTTCCAAACTGATAAGGCTCTGTTCCCTGTAACA
1 ATAGTTTCCAAACCAATAAGGCTCTGTTCCCTGTAACA
14905475 ATAGTTTCCAAACCAATAAGGCTCTGTTCCCTGTAACA
1 ATAGTTTCCAAACCAATAAGGCTCTGTTCCCTGTAACA
14905513 CCCACATACC
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.30, C:0.25, G:0.14, T:0.30
Consensus pattern (38 bp):
ATAGTTTCCAAACCAATAAGGCTCTGTTCCCTGTAACA
Found at i:14912016 original size:11 final size:12
Alignment explanation
Indices: 14911995--14912036 Score: 54
Period size: 11 Copynumber: 3.7 Consensus size: 12
14911985 ACTAATCCTA
14911995 TCTCAAATTTCC
1 TCTCAAATTTCC
14912007 TCTC-AATTTCC
1 TCTCAAATTTCC
14912018 T-TCCAAATTT-C
1 TCT-CAAATTTCC
14912029 TCTCAAAT
1 TCTCAAAT
14912037 CCATATTTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
10 1 0.04
11 16 0.59
12 10 0.37
ACGTcount: A:0.26, C:0.31, G:0.00, T:0.43
Consensus pattern (12 bp):
TCTCAAATTTCC
Found at i:14913928 original size:18 final size:18
Alignment explanation
Indices: 14913901--14913940 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
14913891 CAGGTGCGTT
* *
14913901 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
14913919 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
14913937 TCCT
1 TCCT
14913941 TTTCCGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:14914523 original size:21 final size:21
Alignment explanation
Indices: 14914494--14915244 Score: 1051
Period size: 21 Copynumber: 35.9 Consensus size: 21
14914484 ACAAACCTTA
14914494 AACCCTTAACTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
*
14914515 AACCTTTAA-TTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
*
14914535 AACCCTTAAATTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
* *
14914556 AA-ACTTGAAATTAAAAACCCT
1 AACCCTT-AACTTAAAAACCCT
*
14914577 AACCCTTAAGTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
* *
14914598 AACCCTTAAATTAAAAACCAT
1 AACCCTTAACTTAAAAACCCT
* *
14914619 AAGCCTTAACTTAATAACCCT
1 AACCCTTAACTTAAAAACCCT
* *
14914640 AAACCTTAACTTAAAAACCAT
1 AACCCTTAACTTAAAAACCCT
14914661 AACCCTTAACTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
* *
14914682 AACCCTTAAATTAAAAAACCT
1 AACCCTTAACTTAAAAACCCT
** *
14914703 AAATCTTAACTTAATAACCCT
1 AACCCTTAACTTAAAAACCCT
14914724 AACCCTTAACTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
14914745 AACCCTTAACTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
14914766 AACCCTTAACTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
*
14914787 AACCCTTAAATT-AAAACCCT
1 AACCCTTAACTTAAAAACCCT
*
14914807 AAACCTTAACTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
*
14914828 AAACCTTAACTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
*
14914849 AAACCTTAACTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
*
14914870 AACCCTTAAATTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
* *
14914891 AAACCTTAACTTAATAACCCT
1 AACCCTTAACTTAAAAACCCT
* *
14914912 AAACCTTAAATTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
* *
14914933 AACCCTTAAATTAAAAACCAT
1 AACCCTTAACTTAAAAACCCT
*
14914954 AAACCTTAACTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
*
14914975 AACCCTTAACTTAAAAACACT
1 AACCCTTAACTTAAAAACCCT
* *
14914996 AACCTTTAAATTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
** * *
14915017 AAATCTTAACTTAATAACCTT
1 AACCCTTAACTTAAAAACCCT
* * *
14915038 AAACCTTAAATTAAAAGCCCT
1 AACCCTTAACTTAAAAACCCT
14915059 AACCCTTAACTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
14915080 AACCCTTAACTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
* *
14915101 AACCCTTAAATTTAAAACCCT
1 AACCCTTAACTTAAAAACCCT
*
14915122 AAACCTTAACTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
14915143 AACCCTTAACTTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
*
14915164 AACCCTTTACTT-AAAACCCT
1 AACCCTTAACTTAAAAACCCT
* *
14915184 AAACCTTAACTTAATAACCCT
1 AACCCTTAACTTAAAAACCCT
* *
14915205 AAACCTTAAATTAAAAACCCT
1 AACCCTTAACTTAAAAACCCT
14915226 AACCCTTAACTTAAAAACC
1 AACCCTTAACTTAAAAACC
14915245 TTAAGGTTTT
Statistics
Matches: 651, Mismatches: 74, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
20 58 0.09
21 590 0.91
22 3 0.00
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.25
Consensus pattern (21 bp):
AACCCTTAACTTAAAAACCCT
Found at i:14916805 original size:23 final size:22
Alignment explanation
Indices: 14916745--14916808 Score: 69
Period size: 23 Copynumber: 2.9 Consensus size: 22
14916735 TGAGATCAAT
14916745 AATATACATTTGTATATAAAATG
1 AATATACATTTGTATAT-AAATG
* *
14916768 AACATA-ATTTG-ATATAAATT
1 AATATACATTTGTATATAAATG
*
14916788 ATATATACATATGTATATAAA
1 A-ATATACATTTGTATATAAA
14916809 ATAGTATTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
20 5 0.15
21 8 0.24
22 9 0.26
23 12 0.35
ACGTcount: A:0.50, C:0.05, G:0.06, T:0.39
Consensus pattern (22 bp):
AATATACATTTGTATATAAATG
Found at i:14918366 original size:114 final size:115
Alignment explanation
Indices: 14918234--14918458 Score: 425
Period size: 114 Copynumber: 2.0 Consensus size: 115
14918224 GGGTACTACA
*
14918234 CACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTT
1 CACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAATAAGTTGATATAATTT
*
14918299 GATAATTTTACTAACCATTAATACAA-TTATCAGTTAATAATTTTACATT
66 GATAATTTTACTAACCATTAATACAATTTATCAATTAATAATTTTACATT
14918348 CACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAATAAGTTGATATAATTT
1 CACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAATAAGTTGATATAATTT
14918413 GATAATTTTACTAACCATTAATACAATTTATCAATTAATAATTTTA
66 GATAATTTTACTAACCATTAATACAATTTATCAATTAATAATTTTA
14918459 AAAATATAAT
Statistics
Matches: 108, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
114 90 0.83
115 18 0.17
ACGTcount: A:0.40, C:0.09, G:0.10, T:0.41
Consensus pattern (115 bp):
CACATAATGTTAGATTTGGAAAAATGTTTTGACTGGTACTAACAATTAATAAGTTGATATAATTT
GATAATTTTACTAACCATTAATACAATTTATCAATTAATAATTTTACATT
Found at i:14921904 original size:249 final size:247
Alignment explanation
Indices: 14921465--14921994 Score: 873
Period size: 249 Copynumber: 2.1 Consensus size: 247
14921455 CCCAAACATG
14921465 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
14921530 TAGAAGTGATTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGACCTACTGT
66 TAGAAGCGATTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGACCTACTAT
* * * * *
14921595 AGTAAAAGCGCGTCCACGAGGGCGCGATTTCATAAATTCTTCTCAAATAGCATCCTGCTAGAAGT
131 AGCAAAAGCGCGTCCACGAGGGCGCGATTTCAAAAATTCTTATCAAACAGCATCCTGCTAGAAGC
*
14921660 GATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTTCTTCCAGGAC
196 GATTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTT-TTCCAGGAC
*
14921713 CTACTGTAGCAAAAGCGCGTCCACG-GGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
14921777 TAGAAGCGATTTTATACTATTTGCTTAGAAACGTCAAGTCGAAATTATTTCTTCCAGGACCTACT
66 TAGAAGCGA-TTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTT-TTCCAGGACCTACT
*
14921842 ATAGCAAAAGCGCGTCGACGAGGGCGCGATTTCAAAAATTCTTATCAAACAGCATCCTGCTAGAA
129 ATAGCAAAAGCGCGTCCACGAGGGCGCGATTTCAAAAATTCTTATCAAACAGCATCCTGCTAGAA
* *
14921907 GCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
194 GCGATTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGGAC
* * * *
14921961 CTATTGTAGCAAAAGTGCATACACGTGGGCGCGA
1 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGA
14921995 CTTATTTGTT
Statistics
Matches: 262, Mismatches: 17, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
247 47 0.18
248 92 0.35
249 123 0.47
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (247 bp):
CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGACCTACTAT
AGCAAAAGCGCGTCCACGAGGGCGCGATTTCAAAAATTCTTATCAAACAGCATCCTGCTAGAAGC
GATTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGGAC
Found at i:14921925 original size:125 final size:124
Alignment explanation
Indices: 14921465--14921994 Score: 857
Period size: 124 Copynumber: 4.3 Consensus size: 124
14921455 CCCAAACATG
*
14921465 CTACTGTAGCAAAAGTGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
14921530 TAGAAGTGA-TTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGAC
* *
14921588 CTACTGTAGTAAAAGCGCGTCCACGAGGGCGCGATTTCATAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
14921653 TAGAAGTGATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTTCTTCCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTT-TTCCAGGAC
14921713 CTACTGTAGCAAAAGCGCGTCCACG-GGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
*
14921777 TAGAAGCGATTTTATACTATTTGCTTAGAAACGTCAAGTCGAAATTATTTCTTCCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTT-TTCCAGGAC
* * * * *
14921837 CTACTATAGCAAAAGCGCGTCGACGAGGGCGCGATTTCAAAAATTCTTATCAAACAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
* *
14921902 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGAC
* * * * *
14921961 CTATTGTAGCAAAAGTGCATACACGTGGGCGCGA
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGA
14921995 CTTATTTGTT
Statistics
Matches: 380, Mismatches: 24, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
123 71 0.19
124 192 0.51
125 117 0.31
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.29
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGAC
Found at i:14922856 original size:166 final size:160
Alignment explanation
Indices: 14922553--14922857 Score: 459
Period size: 160 Copynumber: 1.9 Consensus size: 160
14922543 TAATAGTTGA
* *
14922553 ATTGTATTTTATTATTTCTATTAAAAGTGGATAAATTAATCTTTATACATTAAAAAAAATAAATT
1 ATTGTATTTTATTATCTCTATTAAAAATGGATAAATTAATCTTTATACATTAAAAAAAATAAATT
14922618 ATTTCATTTAGTTAAAAATTCGCCATTAAATGATCATGGTAGGTAATATCCAAGATGGAATTAAT
66 ATTTCATTTAGTTAAAAATTCGCCATTAAATGATCATGGTAGGTAATATCCAAGATGGAATTAAT
14922683 GTTTAATTTCGCCCATTTAGTAGAAATAGG
131 GTTTAATTTCGCCCATTTAGTAGAAATAGG
* * * *
14922713 ATTGTATTTTGTTCTCTCTTTTAAAAAT-GAGTAAATTAATCTTTGTACATTAGACAAAAAATGT
1 ATTGTATTTTATTATCTCTATTAAAAATGGA-TAAATTAATCTTTATACATTA-A-AAAAAA--T
* *
14922777 AAATTATTTCATTTTGTTAAGAATTCGCCATTAAATGATGACATGGTAGGTAATATCCAAGATGG
61 AAATTATTTCATTTAGTTAAAAATTCGCCATTAAATGAT--CATGGTAGGTAATATCCAAGATGG
*
14922842 AATTAATTTTTAATTT
124 AATTAATGTTTAATTT
14922858 TAAAAAATCC
Statistics
Matches: 129, Mismatches: 9, Indels: 8
0.88 0.06 0.05
Matches are distributed among these distances:
159 2 0.02
160 43 0.33
161 1 0.01
162 6 0.05
164 38 0.29
166 39 0.30
ACGTcount: A:0.38, C:0.09, G:0.13, T:0.41
Consensus pattern (160 bp):
ATTGTATTTTATTATCTCTATTAAAAATGGATAAATTAATCTTTATACATTAAAAAAAATAAATT
ATTTCATTTAGTTAAAAATTCGCCATTAAATGATCATGGTAGGTAATATCCAAGATGGAATTAAT
GTTTAATTTCGCCCATTTAGTAGAAATAGG
Found at i:14923727 original size:23 final size:24
Alignment explanation
Indices: 14923687--14923733 Score: 87
Period size: 23 Copynumber: 2.0 Consensus size: 24
14923677 AAAAGAGAAA
14923687 ATCAACATAGGGAAATAGATCAAC
1 ATCAACATAGGGAAATAGATCAAC
14923711 ATCAACATA-GGAAATAGATCAAC
1 ATCAACATAGGGAAATAGATCAAC
14923734 CATTTCATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.51, C:0.17, G:0.15, T:0.17
Consensus pattern (24 bp):
ATCAACATAGGGAAATAGATCAAC
Found at i:14937515 original size:20 final size:20
Alignment explanation
Indices: 14937490--14937530 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
14937480 GTCTTTATAT
**
14937490 AAGCATGATGCAAAAAATTA
1 AAGCATGAAACAAAAAATTA
14937510 AAGCATGAAACAAAAAATTA
1 AAGCATGAAACAAAAAATTA
14937530 A
1 A
14937531 GTTTCTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.61, C:0.10, G:0.12, T:0.17
Consensus pattern (20 bp):
AAGCATGAAACAAAAAATTA
Found at i:14938637 original size:26 final size:26
Alignment explanation
Indices: 14938601--14938655 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
14938591 GAGTTGGTAC
14938601 CATTTTTGAACTGAAAATTAAACATT
1 CATTTTTGAACTGAAAATTAAACATT
14938627 CATTTTTGAACTGAAAATTAAACATT
1 CATTTTTGAACTGAAAATTAAACATT
14938653 CAT
1 CAT
14938656 ATATTAATAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.38
Consensus pattern (26 bp):
CATTTTTGAACTGAAAATTAAACATT
Found at i:14939558 original size:29 final size:25
Alignment explanation
Indices: 14939504--14939553 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
14939494 ATAAAAAATG
14939504 TATATAATATTGCATTCATTCACAT
1 TATATAATATTGCATTCATTCACAT
14939529 TATATAATATTGCATTCATTCACAT
1 TATATAATATTGCATTCATTCACAT
14939554 ACATTCCTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.04, T:0.44
Consensus pattern (25 bp):
TATATAATATTGCATTCATTCACAT
Found at i:14941891 original size:50 final size:50
Alignment explanation
Indices: 14941823--14941999 Score: 187
Period size: 50 Copynumber: 3.6 Consensus size: 50
14941813 ATTAGAGGCG
* * * **
14941823 CCACATAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATGAGAGGTC
1 CCACGTAAGACCATGTCTGGGACATGGCATTGGCACTGACATGAGAAATC
* * * * *
14941873 CCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTC
1 CCACGTAAGACCATGTCTGGGACATGGCATTGGCACTGACATGAGAAATC
* * * * * *
14941923 CCATGTAAGACCATATCTGGGATATGGCATTGGTAGT-ACAGGA-AACATC
1 CCACGTAAGACCATGTCTGGGACATGGCATTGGCACTGACATGAGAA-ATC
14941972 CCACGTAAGACCATGTCTGGGACATGGC
1 CCACGTAAGACCATGTCTGGGACATGGC
14942000 TTTAGCATGT
Statistics
Matches: 104, Mismatches: 22, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
48 2 0.02
49 31 0.30
50 71 0.68
ACGTcount: A:0.28, C:0.24, G:0.28, T:0.20
Consensus pattern (50 bp):
CCACGTAAGACCATGTCTGGGACATGGCATTGGCACTGACATGAGAAATC
Found at i:14942232 original size:20 final size:20
Alignment explanation
Indices: 14942207--14942245 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
14942197 TGAGTTATTT
14942207 AAGTAAGCA-AGTAAGTAAAC
1 AAGTAAG-AGAGTAAGTAAAC
14942227 AAGTAAGAGAGTAAGTAAA
1 AAGTAAGAGAGTAAGTAAA
14942246 AAAGAAGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.56, C:0.05, G:0.23, T:0.15
Consensus pattern (20 bp):
AAGTAAGAGAGTAAGTAAAC
Found at i:14951112 original size:25 final size:26
Alignment explanation
Indices: 14951074--14951128 Score: 67
Period size: 25 Copynumber: 2.2 Consensus size: 26
14951064 TTCTTGATCT
*
14951074 AAATAATTAAATTCAACTC-ATTCAA
1 AAATAATTAAATTCAACTCAATCCAA
** *
14951099 AAATAATTCTATTCAATTCAATCCAA
1 AAATAATTAAATTCAACTCAATCCAA
14951125 AAAT
1 AAAT
14951129 CATATTTTGG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.51, C:0.16, G:0.00, T:0.33
Consensus pattern (26 bp):
AAATAATTAAATTCAACTCAATCCAA
Found at i:14971669 original size:222 final size:222
Alignment explanation
Indices: 14971283--14971731 Score: 862
Period size: 222 Copynumber: 2.0 Consensus size: 222
14971273 ATTTGTGTGT
* *
14971283 AACTTGGGTTTTTTTAGCCTTATTGGTGCCATCTATTCGTAGGGAGAGAAAGTGAAACCGTAGTT
1 AACTTGGGTTTTTTTAGCCTTATCGGTGCCATCTATTCGTAGGGAGAGAAAGTGAAACCATAGTT
14971348 GAATTAGTTAAACACAAATAATAGCTATTTAATACAAAAAAAATCCCTTAGTTGAACTAGGAGAG
66 GAATTAGTTAAACACAAATAATAGCTATTTAATACAAAAAAAATCCCTTAGTTGAACTAGGAGAG
14971413 AAGGACAACTAATAAGGTATGTCTCCCCTCATATGTATTATGATGGGGAGTAAGGCCTCTCCTAT
131 AAGGACAACTAATAAGGTATGTCTCCCCTCATATGTATTATGATGGGGAGTAAGGCCTCTCCTAT
14971478 ATTAGGTCCAATTATACGTGCTTCCTG
196 ATTAGGTCCAATTATACGTGCTTCCTG
14971505 AACTTGGGTTTTTTTAGCCTTATCGGTGCCATCTATTCGTAGGGAGAGAAAGTGAAACCATAGTT
1 AACTTGGGTTTTTTTAGCCTTATCGGTGCCATCTATTCGTAGGGAGAGAAAGTGAAACCATAGTT
* *
14971570 GAATTAGTTAAACACAAATAATAGTTGTTTAATACAAAAAAAATCCCTTAGTTGAACTAGGAGAG
66 GAATTAGTTAAACACAAATAATAGCTATTTAATACAAAAAAAATCCCTTAGTTGAACTAGGAGAG
14971635 AAGGACAACTAATAAGGTATGTCTCCCCTCATATGTATTATGATGGGGAGTAAGGCCTCTCCTAT
131 AAGGACAACTAATAAGGTATGTCTCCCCTCATATGTATTATGATGGGGAGTAAGGCCTCTCCTAT
14971700 ATTAGGTCCAATTATACGTGCTTCCTG
196 ATTAGGTCCAATTATACGTGCTTCCTG
14971727 AACTT
1 AACTT
14971732 TTAACCCAAC
Statistics
Matches: 223, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
222 223 1.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.31
Consensus pattern (222 bp):
AACTTGGGTTTTTTTAGCCTTATCGGTGCCATCTATTCGTAGGGAGAGAAAGTGAAACCATAGTT
GAATTAGTTAAACACAAATAATAGCTATTTAATACAAAAAAAATCCCTTAGTTGAACTAGGAGAG
AAGGACAACTAATAAGGTATGTCTCCCCTCATATGTATTATGATGGGGAGTAAGGCCTCTCCTAT
ATTAGGTCCAATTATACGTGCTTCCTG
Found at i:14974771 original size:12 final size:14
Alignment explanation
Indices: 14974754--14974786 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
14974744 TAATGGTCAC
14974754 ATGTGTA-G-TACT
1 ATGTGTAGGCTACT
14974766 ATGTGTAGGCTACT
1 ATGTGTAGGCTACT
14974780 ATGTGTA
1 ATGTGTA
14974787 CCAGATGGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 1 0.05
14 11 0.58
ACGTcount: A:0.24, C:0.09, G:0.27, T:0.39
Consensus pattern (14 bp):
ATGTGTAGGCTACT
Found at i:14974780 original size:51 final size:51
Alignment explanation
Indices: 14974704--14974924 Score: 205
Period size: 51 Copynumber: 4.4 Consensus size: 51
14974694 TATGAACACG
* * *
14974704 TGTGTAGTACTAAGTGCAAGCTACTACGTGTATCA-ATAGATAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAT-GATAATGGTCACA
* * * ** *
14974755 TGTGTAGTACTATGTGTAGGCTACTATGTGTACCAGATGGTCTTGGTCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATGATAATGGTCACA
* * * * * *
14974806 TGTGTAGTACTATGTGCAGGCTACTATGTGAACCAGAAAGCT--TGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAG-ATGATAATGGTCACA
* * * * *
14974856 TGTATAGTACTATGTGTAGGCTACTACGTGTATCGGATGACAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATGATAATGGTCACA
* *
14974907 TGGGTGGTACTATGTGCA
1 TGTGTAGTACTATGTGCA
14974925 AACCACCGAA
Statistics
Matches: 137, Mismatches: 29, Indels: 8
0.79 0.17 0.05
Matches are distributed among these distances:
49 2 0.01
50 37 0.27
51 93 0.68
52 5 0.04
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATGATAATGGTCACA
Found at i:14974903 original size:101 final size:101
Alignment explanation
Indices: 14974700--14974925 Score: 249
Period size: 101 Copynumber: 2.2 Consensus size: 101
14974690 TACCTATGAA
* * * * * *
14974700 CACGTGTGTAGTACTAAGTGCAAGCTACTACGTGTATCAATAGATAATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGCAAGCTACTACGTGAACCAAAAGAT-ATGATCACATGTATAGTAC
* * *
14974765 TATGTGTAGGCTACTATGTGTACCAGATGGTCTTGGT
65 TATGTGTAGGCTACTACGTGTACCAGATGGACATGGT
* * * *
14974802 CACGTGTGTAGTACTATGTGCAGGCTACTATGTGAACCAGAAAGCT-TGATCACGTGTATAGTAC
1 CACGTGTGTAGTACTATGTGCAAGCTACTACGTGAACCA-AAAGATATGATCACATGTATAGTAC
* *
14974866 TATGTGTAGGCTACTACGTGTATCGGAT-GACAATGGT
65 TATGTGTAGGCTACTACGTGTACCAGATGGAC-ATGGT
* * *
14974903 CACATGGGTGGTACTATGTGCAA
1 CACGTGTGTAGTACTATGTGCAA
14974926 ACCACCGAAT
Statistics
Matches: 103, Mismatches: 19, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
100 2 0.02
101 63 0.61
102 34 0.33
103 4 0.04
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.31
Consensus pattern (101 bp):
CACGTGTGTAGTACTATGTGCAAGCTACTACGTGAACCAAAAGATATGATCACATGTATAGTACT
ATGTGTAGGCTACTACGTGTACCAGATGGACATGGT
Found at i:14975984 original size:7 final size:7
Alignment explanation
Indices: 14975972--14975998 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
14975962 AATTGTTCTG
14975972 TATATAC
1 TATATAC
14975979 TATATAC
1 TATATAC
14975986 TATATAC
1 TATATAC
14975993 TATATA
1 TATATA
14975999 ATAGTTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (7 bp):
TATATAC
Found at i:14991491 original size:26 final size:26
Alignment explanation
Indices: 14991446--14991506 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
14991436 CCTCGTACTC
*
14991446 CCCATGTTTACTGTCTCGAC-GAACTAT
1 CCCATG-TTACTGTCCCGACAG-ACTAT
*
14991473 CCCATGTTAGTGTCCCGACAGACTAT
1 CCCATGTTACTGTCCCGACAGACTAT
*
14991499 CCCGTGTT
1 CCCATGTT
14991507 CAGTTTCCTG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 23 0.77
27 7 0.23
ACGTcount: A:0.20, C:0.31, G:0.18, T:0.31
Consensus pattern (26 bp):
CCCATGTTACTGTCCCGACAGACTAT
Found at i:14994352 original size:13 final size:14
Alignment explanation
Indices: 14994324--14994352 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
14994314 ATTATCTTTA
14994324 TTTTAAAATGATTT
1 TTTTAAAATGATTT
14994338 TTTTAAAATGATTT
1 TTTTAAAATGATTT
14994352 T
1 T
14994353 AATATCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.07, T:0.59
Consensus pattern (14 bp):
TTTTAAAATGATTT
Found at i:14998226 original size:41 final size:39
Alignment explanation
Indices: 14998170--14998261 Score: 132
Period size: 41 Copynumber: 2.3 Consensus size: 39
14998160 AATATATTTA
14998170 TTTTTTAATTTTTTTAATTTTAAAATA-TTTTTAAAATACT
1 TTTTTTAATTTTTTTAATTTTAAAATACTTTTTAAAA-A-T
*
14998210 TTTTTTATTATTTTTTAATTTTAAAATACTTTTTAAAAAT
1 TTTTTTAAT-TTTTTTAATTTTAAAATACTTTTTAAAAAT
*
14998250 TTTTTAAATTTT
1 TTTTTTAATTTT
14998262 AAAATATTTT
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
39 3 0.06
40 16 0.34
41 19 0.40
42 9 0.19
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (39 bp):
TTTTTTAATTTTTTTAATTTTAAAATACTTTTTAAAAAT
Found at i:14998232 original size:30 final size:30
Alignment explanation
Indices: 14998198--14998299 Score: 118
Period size: 30 Copynumber: 3.3 Consensus size: 30
14998188 TTTAAAATAT
* *
14998198 TTTTAAAATACTTTTTTTATTATTTTTTAA
1 TTTTAAAATACTTTTTTAATAATTTTTTAA
*
14998228 TTTTAAAATAC-TTTTTAAAAATTTTTTAAA
1 TTTTAAAATACTTTTTTAATAATTTTTT-AA
*
14998258 TTTTAAAATA-TTTTTAAAATACATTTTTTAA
1 TTTTAAAATACTTTTT-TAATA-ATTTTTTAA
14998289 TTTTTAAAATA
1 -TTTTAAAATA
14998300 AATTTTTGGT
Statistics
Matches: 62, Mismatches: 5, Indels: 8
0.83 0.07 0.11
Matches are distributed among these distances:
29 13 0.21
30 27 0.44
31 5 0.08
32 17 0.27
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (30 bp):
TTTTAAAATACTTTTTTAATAATTTTTTAA
Found at i:14998261 original size:18 final size:19
Alignment explanation
Indices: 14998240--14998277 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
14998230 TTAAAATACT
*
14998240 TTTTAAAA-ATTTTTTAAA
1 TTTTAAAATATTTTTAAAA
14998258 TTTTAAAATATTTTTAAAA
1 TTTTAAAATATTTTTAAAA
14998277 T
1 T
14998278 ACATTTTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
TTTTAAAATATTTTTAAAA
Found at i:14998285 original size:13 final size:11
Alignment explanation
Indices: 14998187--14998278 Score: 65
Period size: 11 Copynumber: 8.9 Consensus size: 11
14998177 ATTTTTTTAA
14998187 TTTTAAAATAT
1 TTTTAAAATAT
14998198 TTTTAAAATACT
1 TTTTAAAATA-T
** *
14998210 TTTTTTATTAT
1 TTTTAAAATAT
*
14998221 TTTT----TAA
1 TTTTAAAATAT
14998228 TTTTAAAATACT
1 TTTTAAAATA-T
14998240 TTTTAAAA-AT
1 TTTTAAAATAT
*
14998250 TTTT-TAA-A-
1 TTTTAAAATAT
14998258 TTTTAAAATAT
1 TTTTAAAATAT
14998269 TTTTAAAATA
1 TTTTAAAATA
14998279 CATTTTTTAA
Statistics
Matches: 65, Mismatches: 7, Indels: 18
0.72 0.08 0.20
Matches are distributed among these distances:
7 6 0.09
8 4 0.06
9 5 0.08
10 6 0.09
11 28 0.43
12 16 0.25
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:14998304 original size:21 final size:21
Alignment explanation
Indices: 14998267--14998306 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
14998257 ATTTTAAAAT
*
14998267 ATTTTTAAAATACATTTTTTA
1 ATTTTTAAAATAAATTTTTTA
14998288 ATTTTTAAAATAAATTTTT
1 ATTTTTAAAATAAATTTTT
14998307 GGTATTTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (21 bp):
ATTTTTAAAATAAATTTTTTA
Found at i:14998313 original size:22 final size:20
Alignment explanation
Indices: 14998266--14998324 Score: 66
Period size: 21 Copynumber: 2.8 Consensus size: 20
14998256 AATTTTAAAA
*
14998266 TATTTTTAAAATACATTTTT
1 TATTTTTAAAATAAATTTTT
14998286 TAATTTTTAAAATAAATTTTT
1 T-ATTTTTAAAATAAATTTTT
14998307 GGTATTTATTAAAA-AAAT
1 --TATTT-TTAAAATAAAT
14998325 GGGCCGGGCC
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
20 1 0.03
21 18 0.53
22 8 0.24
23 7 0.21
ACGTcount: A:0.42, C:0.02, G:0.03, T:0.53
Consensus pattern (20 bp):
TATTTTTAAAATAAATTTTT
Found at i:15001902 original size:3 final size:3
Alignment explanation
Indices: 15001894--15001920 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
15001884 TGGGTTGAGG
15001894 GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA
15001921 AAGGAATGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:15002679 original size:20 final size:22
Alignment explanation
Indices: 15002656--15002698 Score: 63
Period size: 20 Copynumber: 2.0 Consensus size: 22
15002646 ATTTTAAATG
*
15002656 AAAATATTAAATT-TAA-ATTA
1 AAAATATAAAATTATAATATTA
15002676 AAAATATAAAATTATAATATTA
1 AAAATATAAAATTATAATATTA
15002698 A
1 A
15002699 GTATTTAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 12 0.60
21 3 0.15
22 5 0.25
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (22 bp):
AAAATATAAAATTATAATATTA
Found at i:15002946 original size:18 final size:18
Alignment explanation
Indices: 15002923--15002962 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
15002913 TATAGATTTT
* * *
15002923 AAAATTTTAAAATAATTA
1 AAAATTATAAAAAAAATA
15002941 AAAATTATAAAAAAAATA
1 AAAATTATAAAAAAAATA
15002959 AAAA
1 AAAA
15002963 AGTATTTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (18 bp):
AAAATTATAAAAAAAATA
Found at i:15007292 original size:26 final size:26
Alignment explanation
Indices: 15007263--15007330 Score: 100
Period size: 26 Copynumber: 2.6 Consensus size: 26
15007253 ATTTCGACCT
*
15007263 ACAGCTTGTGTGAGCAGGCCCATTTC
1 ACAGCTCGTGTGAGCAGGCCCATTTC
* *
15007289 ACAGCTCGTGTGAGTAGGTCCATTTC
1 ACAGCTCGTGTGAGCAGGCCCATTTC
*
15007315 ACAGCTCATGTGAGCA
1 ACAGCTCGTGTGAGCA
15007331 ATGATGTATA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 37 1.00
ACGTcount: A:0.22, C:0.25, G:0.26, T:0.26
Consensus pattern (26 bp):
ACAGCTCGTGTGAGCAGGCCCATTTC
Found at i:15009559 original size:21 final size:21
Alignment explanation
Indices: 15009535--15009580 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
15009525 AATTGTAAAG
15009535 AAGTTAAAATATTAAGGGCAA
1 AAGTTAAAATATTAAGGGCAA
15009556 AAGTTAAAATATTAAGGGCAA
1 AAGTTAAAATATTAAGGGCAA
15009577 AAGT
1 AAGT
15009581 GTAATTTTGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.52, C:0.04, G:0.20, T:0.24
Consensus pattern (21 bp):
AAGTTAAAATATTAAGGGCAA
Found at i:15009594 original size:16 final size:17
Alignment explanation
Indices: 15009573--15009606 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
15009563 AATATTAAGG
*
15009573 GCAAAAGTGT-AATTTT
1 GCAAAAGTATGAATTTT
15009589 GCAAAAGTATGAATTTT
1 GCAAAAGTATGAATTTT
15009606 G
1 G
15009607 GACTGAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.38, C:0.06, G:0.21, T:0.35
Consensus pattern (17 bp):
GCAAAAGTATGAATTTT
Found at i:15011150 original size:12 final size:12
Alignment explanation
Indices: 15011133--15011162 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
15011123 TTCGACAGTT
15011133 ACACGGCCTAGC
1 ACACGGCCTAGC
*
15011145 ACACGGCCTGGC
1 ACACGGCCTAGC
15011157 ACACGG
1 ACACGG
15011163 GTGTGTGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:15017491 original size:49 final size:49
Alignment explanation
Indices: 15017423--15017539 Score: 153
Period size: 49 Copynumber: 2.4 Consensus size: 49
15017413 ACGTCACTAA
* * ** *
15017423 TATGGACAAGCCACTAGATAATGCAAACAGGTTTCCAGATACAAAATAT
1 TATGGTCAAGCCACCAGATAATGCAAACAAATTGCCAGATACAAAATAT
**
15017472 TATGGTCAAGCCACCAGATAATGCAGTCAAATTGCCAGATACAAAATAT
1 TATGGTCAAGCCACCAGATAATGCAAACAAATTGCCAGATACAAAATAT
* *
15017521 TGTGGTAAAGCCACCAGAT
1 TATGGTCAAGCCACCAGAT
15017540 TTGTAGACAT
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
49 59 1.00
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.22
Consensus pattern (49 bp):
TATGGTCAAGCCACCAGATAATGCAAACAAATTGCCAGATACAAAATAT
Found at i:15021968 original size:257 final size:257
Alignment explanation
Indices: 15021505--15022015 Score: 738
Period size: 257 Copynumber: 2.0 Consensus size: 257
15021495 TGATGTTGGT
* * *
15021505 TGTGTCACGGTCCTCTTTATGTCTAGCTGCATAGACCAGTGCAAGTTGTCTTACATCAGTTCAGT
1 TGTGTCACGATCCTCTCTATGTCTAGCTGCATAGACCAGTGCAAGTTGTCTTACATCAGCTCAGT
*
15021570 TAGCACCCTAACCTAGTGCTCTCTGTCTCTGACCAACATTACCACCCCTATTCGGACCTTAACCT
66 TAGCACCCTAACCCAGTGCTCTCTGTCTCTGACCAACATTACCACCCCTATTCGGACCTTAACCT
* * * *
15021635 CTCTAAGCCTACTGTCCAGCTCTTTGGTTCTAAGCTCGATTATGTTTTGGGGATTGAATATGTTC
131 CTCTAAGCCTACTGTCCAACTCTTTAGTTCTAAGCTCAATTATGTTCTGGGGATTGAATATGTTC
*
15021700 ATTTCGAAGTGGAAAATCATTGATCTTATGGTTCAAGGATCCACATCTAAGGCATGCACAGC
196 ATTTCGAAGTGGAAAATCATTGATCTTATGGTTCAAAGATCCACATCTAAGGCATGCACAGC
* * * * *
15021762 TGTGTCATGATCCTCTCTGTGTCTAGTTGCATAGACCAGTGCAGGTTGTCTTACATC-GACTCGG
1 TGTGTCACGATCCTCTCTATGTCTAGCTGCATAGACCAGTGCAAGTTGTCTTACATCAG-CTCAG
* * * * *
15021826 TTAGCACCCTGACCCAGTGTTCTCTGTCTCTGACCTACATTACCACCCCTATTTGGACCTTGACC
65 TTAGCACCCTAACCCAGTGCTCTCTGTCTCTGACCAACATTACCACCCCTATTCGGACCTTAACC
* * * * * * *
15021891 TCTCTAAGCCTACTTTTCAACTTTTTAGTTCTAAGCTCAATTCTGTTCTGGGGCTTGCATCTGCT
130 TCTCTAAGCCTACTGTCCAACTCTTTAGTTCTAAGCTCAATTATGTTCTGGGGATTGAATATG-T
* *
15021956 T-ATTTTGAAGTGGACAATCATTGATCTTATGGTTCAAAGATCCACATCTAAGGCATGCAC
194 TCATTTCGAAGTGGAAAATCATTGATCTTATGGTTCAAAGATCCACATCTAAGGCATGCAC
15022016 CCAAGCTCCT
Statistics
Matches: 224, Mismatches: 28, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
256 1 0.00
257 221 0.99
258 2 0.01
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (257 bp):
TGTGTCACGATCCTCTCTATGTCTAGCTGCATAGACCAGTGCAAGTTGTCTTACATCAGCTCAGT
TAGCACCCTAACCCAGTGCTCTCTGTCTCTGACCAACATTACCACCCCTATTCGGACCTTAACCT
CTCTAAGCCTACTGTCCAACTCTTTAGTTCTAAGCTCAATTATGTTCTGGGGATTGAATATGTTC
ATTTCGAAGTGGAAAATCATTGATCTTATGGTTCAAAGATCCACATCTAAGGCATGCACAGC
Found at i:15027023 original size:25 final size:25
Alignment explanation
Indices: 15026986--15027064 Score: 131
Period size: 25 Copynumber: 3.2 Consensus size: 25
15026976 TTCGAGAGTT
*
15026986 ACACGGCCTGACACACGGGCATGTG
1 ACACGGCCCGACACACGGGCATGTG
* *
15027011 ACACGGCCCGACACATGGGCGTGTG
1 ACACGGCCCGACACACGGGCATGTG
15027036 ACACGGCCCGACACACGGGCATGTG
1 ACACGGCCCGACACACGGGCATGTG
15027061 ACAC
1 ACAC
15027065 AACCGTGTGA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.24, C:0.34, G:0.32, T:0.10
Consensus pattern (25 bp):
ACACGGCCCGACACACGGGCATGTG
Found at i:15034500 original size:37 final size:37
Alignment explanation
Indices: 15034432--15034564 Score: 157
Period size: 37 Copynumber: 3.6 Consensus size: 37
15034422 AGTACATAGA
*
15034432 TATTCCAACCGA-AACACGCCAATTTCTCGTAAGAGC
1 TATTCCAACCGATAACACGCCAATTGCTCGTAAGAGC
* *
15034468 TATTCCACCCGATAACATGCCAGA-TGCTCGTAAGAGC
1 TATTCCAACCGATAACACGCCA-ATTGCTCGTAAGAGC
* *
15034505 TAATCCATCCGATAACACGCCAATTGCTCCG-AAGAGC
1 TATTCCAACCGATAACACGCCAATTGCT-CGTAAGAGC
*
15034542 TAGTCCAACC-ATAAACACGCCAA
1 TATTCCAACCGAT-AACACGCCAA
15034565 AACAAGGAGA
Statistics
Matches: 84, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
36 14 0.17
37 67 0.80
38 3 0.04
ACGTcount: A:0.34, C:0.32, G:0.15, T:0.20
Consensus pattern (37 bp):
TATTCCAACCGATAACACGCCAATTGCTCGTAAGAGC
Found at i:15043272 original size:21 final size:21
Alignment explanation
Indices: 15043246--15043311 Score: 114
Period size: 21 Copynumber: 3.1 Consensus size: 21
15043236 GGGTATTGTA
15043246 ACATCCTCCAGTGGTGTCGCG
1 ACATCCTCCAGTGGTGTCGCG
15043267 ACATCCTCCAGTGGTGTCGCG
1 ACATCCTCCAGTGGTGTCGCG
* *
15043288 ACATCCTCTAGTGGTGTCGTG
1 ACATCCTCCAGTGGTGTCGCG
15043309 ACA
1 ACA
15043312 CCAAGGACAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.17, C:0.30, G:0.27, T:0.26
Consensus pattern (21 bp):
ACATCCTCCAGTGGTGTCGCG
Found at i:15046785 original size:19 final size:19
Alignment explanation
Indices: 15046769--15046807 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
15046759 TCAAACTTGT
15046769 AGCAAAAGGTTATACTTAG
1 AGCAAAAGGTTATACTTAG
15046788 AGCAAAAGGTTATACTTAG
1 AGCAAAAGGTTATACTTAG
15046807 A
1 A
15046808 AAGAAGGTAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.44, C:0.10, G:0.21, T:0.26
Consensus pattern (19 bp):
AGCAAAAGGTTATACTTAG
Found at i:15051939 original size:18 final size:18
Alignment explanation
Indices: 15051916--15051950 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
15051906 GAGTTGCCTA
15051916 GAATAACTCAATTTATTC
1 GAATAACTCAATTTATTC
*
15051934 GAATAACTCACTTTATT
1 GAATAACTCAATTTATT
15051951 TAGCTCAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.17, G:0.06, T:0.40
Consensus pattern (18 bp):
GAATAACTCAATTTATTC
Found at i:15054227 original size:48 final size:48
Alignment explanation
Indices: 15054171--15054334 Score: 148
Period size: 48 Copynumber: 3.2 Consensus size: 48
15054161 GAAAAAAAGT
15054171 AAATTTTTTTTACTGTACTGGGTGCCGGCCATTGACAGGCTAGCACCC
1 AAATTTTTTTTACTGTACTGGGTGCCGGCCATTGACAGGCTAGCACCC
* * * * * ** *
15054219 AAAATTTTTTTTATTTTTTTTCGTACTCTGGTGCCGGCCATTGATAGACCAAAACTC
1 -AAATTTTTTTTA------CT-GTACT-GGGTGCCGGCCATTGACAGGCTAGCACCC
* * *
15054276 AAATTTTTTTTACTATACTGGGTGCCGACCATTGACAGGCTAGCACCT
1 AAATTTTTTTTACTGTACTGGGTGCCGGCCATTGACAGGCTAGCACCC
15054324 AAATTTTTTTT
1 AAATTTTTTTT
15054335 TCCCTTTTTT
Statistics
Matches: 88, Mismatches: 19, Indels: 17
0.71 0.15 0.14
Matches are distributed among these distances:
48 31 0.35
49 16 0.18
50 1 0.01
55 1 0.01
56 17 0.19
57 22 0.25
ACGTcount: A:0.24, C:0.21, G:0.17, T:0.38
Consensus pattern (48 bp):
AAATTTTTTTTACTGTACTGGGTGCCGGCCATTGACAGGCTAGCACCC
Found at i:15054237 original size:56 final size:54
Alignment explanation
Indices: 15054174--15054391 Score: 173
Period size: 56 Copynumber: 4.1 Consensus size: 54
15054164 AAAAAGTAAA
*
15054174 TTTTTTTTACTGTACTGGGTGCCGGCCATTGACAGGCTAGCACCCAAAATTTTT
1 TTTTTTTTTCTGTACTGGGTGCCGGCCATTGACAGGCTAGCACCCAAAATTTTT
* * ****
15054228 TTTATTTTTTTTCGTACTCTGGTGCCGGCCATTG--A---TAG-A-CCAAAACTCAAA
1 TTT-TTTTTTCT-GTACT-GGGTGCCGGCCATTGACAGGCTAGCACCCAAAA-TTTTT
* * * * *
15054279 TTTTTTTTACTATACTGGGTGCCGACCATTGACAGGCTAGCACCTAAATTTTTT
1 TTTTTTTTTCTGTACTGGGTGCCGGCCATTGACAGGCTAGCACCCAAAATTTTT
* * * *
15054333 TTTCCCTTTTTTC-GTACTGGGTGTCGGCCATTGATAGGCCAACACCCAAAATTTTT
1 TTT---TTTTTTCTGTACTGGGTGCCGGCCATTGACAGGCTAGCACCCAAAATTTTT
15054389 TTT
1 TTT
15054392 CCTTCTTTTT
Statistics
Matches: 123, Mismatches: 27, Indels: 26
0.70 0.15 0.15
Matches are distributed among these distances:
48 13 0.11
49 4 0.03
50 13 0.11
51 5 0.04
52 3 0.02
53 3 0.02
54 8 0.07
55 11 0.09
56 43 0.35
57 20 0.16
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.39
Consensus pattern (54 bp):
TTTTTTTTTCTGTACTGGGTGCCGGCCATTGACAGGCTAGCACCCAAAATTTTT
Found at i:15054385 original size:105 final size:105
Alignment explanation
Indices: 15054171--15054391 Score: 318
Period size: 105 Copynumber: 2.1 Consensus size: 105
15054161 GAAAAAAAGT
* * **
15054171 AAATTTTTTTTACTGTACTGGGTGCCGGCCATTGACAGGCTAGCACCCAAAATTTTTTTTATTTT
1 AAATTTTTTTTACTATACTGGGTGCCGACCATTGACAGGCTAGCACCCAAAATTTTTTTTACCTT
* *
15054236 TTTTCGTACTCTGGTGCCGGCCATTGATAGACCAAAACTC
66 TTTTCGTACTCGGGTGCCGGCCATTGATAGACCAAAACCC
* * *
15054276 AAATTTTTTTTACTATACTGGGTGCCGACCATTGACAGGCTAGCACCTAAATTTTTTTTTCCCTT
1 AAATTTTTTTTACTATACTGGGTGCCGACCATTGACAGGCTAGCACCCAAAATTTTTTTTACCTT
* * *
15054341 TTTTCGTACT-GGGTGTCGGCCATTGATAGGCCAACACCC
66 TTTTCGTACTCGGGTGCCGGCCATTGATAGACCAAAACCC
15054380 AAAATTTTTTTT
1 -AAATTTTTTTT
15054392 CCTTCTTTTT
Statistics
Matches: 103, Mismatches: 12, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
104 24 0.23
105 79 0.77
ACGTcount: A:0.23, C:0.22, G:0.17, T:0.38
Consensus pattern (105 bp):
AAATTTTTTTTACTATACTGGGTGCCGACCATTGACAGGCTAGCACCCAAAATTTTTTTTACCTT
TTTTCGTACTCGGGTGCCGGCCATTGATAGACCAAAACCC
Found at i:15066130 original size:39 final size:39
Alignment explanation
Indices: 15066077--15066284 Score: 301
Period size: 39 Copynumber: 5.4 Consensus size: 39
15066067 TTTGAACAAA
* * *
15066077 TTTCTGTAGAATCAGTGGGTATGGCTTGATTGAGCATAC
1 TTTCAGTAGAATCAGTAGGTATGGCTCGATTGAGCATAC
*
15066116 TTTCAGTAGAATCAGTAGGTATGGCTCAATTGAGCATAC
1 TTTCAGTAGAATCAGTAGGTATGGCTCGATTGAGCATAC
* * *
15066155 TTTTAGTAGAATCAGTAAGTATGACTCGATTGAGCATAC
1 TTTCAGTAGAATCAGTAGGTATGGCTCGATTGAGCATAC
* * * *
15066194 ATTCAATAGAAT-AGTGGGTATGGCTCGATTGAGTATAC
1 TTTCAGTAGAATCAGTAGGTATGGCTCGATTGAGCATAC
*
15066232 TTTCAATAGAATCAGTAGGTATGGCTCGATTGAGCATAC
1 TTTCAGTAGAATCAGTAGGTATGGCTCGATTGAGCATAC
15066271 TTTCAGTAGAATCA
1 TTTCAGTAGAATCA
15066285 TTATCCCATT
Statistics
Matches: 149, Mismatches: 19, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
38 33 0.22
39 116 0.78
ACGTcount: A:0.30, C:0.13, G:0.24, T:0.33
Consensus pattern (39 bp):
TTTCAGTAGAATCAGTAGGTATGGCTCGATTGAGCATAC
Found at i:15066248 original size:77 final size:78
Alignment explanation
Indices: 15066083--15066284 Score: 298
Period size: 77 Copynumber: 2.6 Consensus size: 78
15066073 CAAATTTCTG
* *
15066083 TAGAATCAGTGGGTATGGCTTGATTGAGCATACTTTCAGTAGAATCAGTAGGTATGGCTCAATTG
1 TAGAATCAGTAGGTATGGCTCGATTGAGCATACTTTCAGTAGAATCAGTAGGTATGGCTCAATTG
* *
15066148 AGCATACTTTTAG
66 AGCATACTTTCAA
* * * * * *
15066161 TAGAATCAGTAAGTATGACTCGATTGAGCATACATTCAATAGAAT-AGTGGGTATGGCTCGATTG
1 TAGAATCAGTAGGTATGGCTCGATTGAGCATACTTTCAGTAGAATCAGTAGGTATGGCTCAATTG
*
15066225 AGTATACTTTCAA
66 AGCATACTTTCAA
15066238 TAGAATCAGTAGGTATGGCTCGATTGAGCATACTTTCAGTAGAATCA
1 TAGAATCAGTAGGTATGGCTCGATTGAGCATACTTTCAGTAGAATCA
15066285 TTATCCCATT
Statistics
Matches: 108, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
77 68 0.63
78 40 0.37
ACGTcount: A:0.31, C:0.13, G:0.24, T:0.32
Consensus pattern (78 bp):
TAGAATCAGTAGGTATGGCTCGATTGAGCATACTTTCAGTAGAATCAGTAGGTATGGCTCAATTG
AGCATACTTTCAA
Found at i:15080220 original size:25 final size:25
Alignment explanation
Indices: 15080192--15080258 Score: 107
Period size: 25 Copynumber: 2.7 Consensus size: 25
15080182 CGGGTACTCC
15080192 ATAGCTCGTGTGAGCATTCTGATTT
1 ATAGCTCGTGTGAGCATTCTGATTT
*
15080217 ATAGCTCGTGTGAGCATTTTGATTT
1 ATAGCTCGTGTGAGCATTCTGATTT
* *
15080242 ACAGCTTGTGTGAGCAT
1 ATAGCTCGTGTGAGCAT
15080259 ACATGTACAA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 39 1.00
ACGTcount: A:0.21, C:0.15, G:0.25, T:0.39
Consensus pattern (25 bp):
ATAGCTCGTGTGAGCATTCTGATTT
Found at i:15081376 original size:20 final size:20
Alignment explanation
Indices: 15081351--15081391 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
15081341 CTTATTTTTA
*
15081351 GTCCACACGGGCATAGACAC
1 GTCCACACGGGCACAGACAC
15081371 GTCCACACGGGCACAGACAC
1 GTCCACACGGGCACAGACAC
15081391 G
1 G
15081392 ACCATATGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.29, C:0.37, G:0.27, T:0.07
Consensus pattern (20 bp):
GTCCACACGGGCACAGACAC
Found at i:15097383 original size:37 final size:37
Alignment explanation
Indices: 15097341--15097424 Score: 150
Period size: 37 Copynumber: 2.3 Consensus size: 37
15097331 GTGAAACATG
15097341 GCCATGGAAAATGGTGGGATATATTGCCAACAGAAAT
1 GCCATGGAAAATGGTGGGATATATTGCCAACAGAAAT
* *
15097378 GCCATGGTAAATGGTGGGATATATTGCCATCAGAAAT
1 GCCATGGAAAATGGTGGGATATATTGCCAACAGAAAT
15097415 GCCATGGAAA
1 GCCATGGAAA
15097425 TTCCAGGAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 44 1.00
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (37 bp):
GCCATGGAAAATGGTGGGATATATTGCCAACAGAAAT
Found at i:15106691 original size:66 final size:66
Alignment explanation
Indices: 15106585--15106717 Score: 239
Period size: 66 Copynumber: 2.0 Consensus size: 66
15106575 AAACATGTAG
15106585 GTTTTGGACTTGTCAAGAAGCCATGGTGTCAGTTTGGGACCACCACATCACCCATCGAACTTTTA
1 GTTTTGGACTTGTCAAGAAGCCATGGTGTCAGTTTGGGACCACCACATCACCCATCGAACTTTTA
15106650 A
66 A
** *
15106651 GTTTTGGACTTGTTGAGAAGCCATGGTGTCAGTTTGGGACCATCACATCACCCATCGAACTTTTA
1 GTTTTGGACTTGTCAAGAAGCCATGGTGTCAGTTTGGGACCACCACATCACCCATCGAACTTTTA
15106716 A
66 A
15106717 G
1 G
15106718 GTTGTATTTC
Statistics
Matches: 64, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (66 bp):
GTTTTGGACTTGTCAAGAAGCCATGGTGTCAGTTTGGGACCACCACATCACCCATCGAACTTTTA
A
Found at i:15109655 original size:17 final size:17
Alignment explanation
Indices: 15109635--15109683 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
15109625 AGAAAACAAA
15109635 AAATTTTAATATTATAT
1 AAATTTTAATATTATAT
** *
15109652 AAATAATAAAATTATAT
1 AAATTTTAATATTATAT
15109669 AAATAATTTAATATT
1 AAAT--TTTAATATT
15109684 TGTGAAAAAT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
17 18 0.75
19 6 0.25
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AAATTTTAATATTATAT
Found at i:15117586 original size:160 final size:155
Alignment explanation
Indices: 15117345--15117804 Score: 572
Period size: 160 Copynumber: 2.9 Consensus size: 155
15117335 TAAGAAAAAG
* * *
15117345 TTTAGATTTTTAAATATAAAAATATATTTTTTAGTCATTTTAAAGGAATGTTTAAATTTTTACAA
1 TTTAGATTTTTAAAAATAAAAATATATTTTTTAGTCATTTTAAAGGAAAGTTAAAATTTTTA-AA
* *
15117410 CAAAGATTTT-ATTTTTGTTTTCAACTATTTCGAAATAAAATTTTTGATCTTTAAGAAAAGTAGT
65 CAAAG-TTTTGATTTTTGTTTTCAACTATTTCGAAATAAAAATTTTAATCTTTAAGAAAAGTAGT
* * *
15117474 GATTTTTTAAAATAAAAAAATTAGAGAAA
129 AATTTTTTAAAAGAAAAAAA--AAAGAAA
* *
15117503 TTTTATATTTTTAAAAATAAAAATATATTATTTTAGTCATTTCAAAGGAAAGTTAAAATTTTTGA
1 -TTTAGATTTTTAAAAATAAAAATATATT-TTTTAGTCATTTTAAAGGAAAGTTAAAATTTTT-A
* * * *
15117568 AACAAAGTTTTGATTTTTGTTTTCAACTATTTCGAAATAAAAACTTTCATCTTTAATAAAAATAG
63 AACAAAGTTTTGATTTTTGTTTTCAACTATTTCGAAATAAAAATTTTAATCTTTAAGAAAAGTAG
15117633 TAATTTTTTAAAAGAAAAAAAAAAGAAA
128 TAATTTTTTAAAAGAAAAAAAAAAGAAA
* * * * *
15117661 TTTAGATTTTTAAAAATAAAAATTTGTTTTTTAATTCATTTTAAAGAAAAAGTTTAAAATTTTAA
1 TTTAGATTTTTAAAAATAAAAATATATTTTTT-AGTCATTTTAAAG-GAAAG-TTAAAATTTTTA
* * *
15117726 AACAAAGTTTTGA--TCT-TTTTCAACTATTTCGAAAT--AAGTTTTAATTTTTAAGAAAAGTAG
63 AACAAAGTTTTGATTTTTGTTTTCAACTATTTCGAAATAAAAATTTTAATCTTTAAGAAAAGTAG
*
15117786 TAATTTTTTTTAAAGAAAA
128 TAA-TTTTTTAAAAGAAAA
15117805 CTTTGATTTT
Statistics
Matches: 266, Mismatches: 28, Indels: 19
0.85 0.09 0.06
Matches are distributed among these distances:
153 22 0.08
154 14 0.05
155 19 0.07
156 6 0.02
157 36 0.14
158 24 0.09
159 40 0.15
160 104 0.39
161 1 0.00
ACGTcount: A:0.43, C:0.05, G:0.08, T:0.43
Consensus pattern (155 bp):
TTTAGATTTTTAAAAATAAAAATATATTTTTTAGTCATTTTAAAGGAAAGTTAAAATTTTTAAAC
AAAGTTTTGATTTTTGTTTTCAACTATTTCGAAATAAAAATTTTAATCTTTAAGAAAAGTAGTAA
TTTTTTAAAAGAAAAAAAAAAGAAA
Found at i:15117691 original size:21 final size:23
Alignment explanation
Indices: 15117649--15117694 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 23
15117639 TTTAAAAGAA
15117649 AAAAAAAAGAAATTTAGATTTTT
1 AAAAAAAAGAAATTTAGATTTTT
* *
15117672 AAAAATAA-AAATTT-GTTTTTT
1 AAAAAAAAGAAATTTAGATTTTT
15117693 AA
1 AA
15117695 TTCATTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 8 0.38
22 6 0.29
23 7 0.33
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (23 bp):
AAAAAAAAGAAATTTAGATTTTT
Done.