Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 53 of 170
Found at i:15495915 original size:31 final size:31
Alignment explanation
Indices: 15495876--15495951 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 31
15495866 CTGTTTTGTA
* *
15495876 TTTACTGTCCAAGCAGACAATTTATTCTGTG
1 TTTACTGTCCAAGCAGACAATCTATTATGTG
* * *
15495907 TTTGCTGTCCCAGCAGACTATCTATTATGTG
1 TTTACTGTCCAAGCAGACAATCTATTATGTG
*
15495938 TTTACTATCCAAGC
1 TTTACTGTCCAAGC
15495952 GAACTATCTC
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (31 bp):
TTTACTGTCCAAGCAGACAATCTATTATGTG
Found at i:15497214 original size:20 final size:20
Alignment explanation
Indices: 15497182--15497225 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
15497172 CTAAAATAAG
*
15497182 AAAT-TTAAGAATAATAAAT
1 AAATATTAAAAATAATAAAT
15497201 AAATATTAAAAATAATAAAT
1 AAATATTAAAAATAATAAAT
15497221 AAATA
1 AAATA
15497226 AATGATAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 4 0.17
20 19 0.83
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (20 bp):
AAATATTAAAAATAATAAAT
Found at i:15498796 original size:25 final size:25
Alignment explanation
Indices: 15498768--15498820 Score: 106
Period size: 25 Copynumber: 2.1 Consensus size: 25
15498758 GTTTTCATAC
15498768 TTTGAATACAAGCAATTTTAGTATG
1 TTTGAATACAAGCAATTTTAGTATG
15498793 TTTGAATACAAGCAATTTTAGTATG
1 TTTGAATACAAGCAATTTTAGTATG
15498818 TTT
1 TTT
15498821 TAATTATGTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.34, C:0.08, G:0.15, T:0.43
Consensus pattern (25 bp):
TTTGAATACAAGCAATTTTAGTATG
Found at i:15501381 original size:5 final size:5
Alignment explanation
Indices: 15501358--15501397 Score: 53
Period size: 5 Copynumber: 7.6 Consensus size: 5
15501348 TGTTTCATTT
*
15501358 TTTTA CTTTA TTTTCTA TTTTA TTTTA TTTTA TTTTA TTT
1 TTTTA TTTTA -TTT-TA TTTTA TTTTA TTTTA TTTTA TTT
15501398 ATTAATGTCT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
5 24 0.77
6 5 0.16
7 2 0.06
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTA
Found at i:15502828 original size:90 final size:90
Alignment explanation
Indices: 15502678--15502901 Score: 324
Period size: 90 Copynumber: 2.5 Consensus size: 90
15502668 TCATCGACTA
* *
15502678 ATGAAAAGGGATGG-TGACGACCATCAAATTATGAAAATGGATGGCTTCGACTATCAAATTATGA
1 ATGAAAAGGGATGGCT-TCGACTATCAAATTATGAAAATGGATGGCTTCGACTATCAAATTATGA
15502742 AAAGGGATGGATTCAGCTATCGAATT
65 AAAGGGATGGATTCAGCTATCGAATT
* * * * *
15502768 ATGAAAAGGGATGGCTTCGGCTATCGATTTATGAAAATGGATGGCTTCGGCTATCGAATTATGAA
1 ATGAAAAGGGATGGCTTCGACTATCAAATTATGAAAATGGATGGCTTCGACTATCAAATTATGAA
* *
15502833 AAGGGATGGCTTCGGCTATCGAATT
66 AAGGGATGGATTCAGCTATCGAATT
* * *
15502858 ATGTAAAGGGATGGCTTCGACTATCAAATTATGGAAAGGGATGG
1 ATGAAAAGGGATGGCTTCGACTATCAAATTATGAAAATGGATGG
15502902 TGACGACCAT
Statistics
Matches: 118, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
90 117 0.99
91 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (90 bp):
ATGAAAAGGGATGGCTTCGACTATCAAATTATGAAAATGGATGGCTTCGACTATCAAATTATGAA
AAGGGATGGATTCAGCTATCGAATT
Found at i:15502914 original size:30 final size:30
Alignment explanation
Indices: 15502678--15502901 Score: 281
Period size: 30 Copynumber: 7.5 Consensus size: 30
15502668 TCATCGACTA
* *
15502678 ATGAAAAGGGATGG-TGACGACCATCAAATT
1 ATGAAAAGGGATGGCT-TCGACTATCAAATT
*
15502708 ATGAAAATGGATGGCTTCGACTATCAAATT
1 ATGAAAAGGGATGGCTTCGACTATCAAATT
* *
15502738 ATGAAAAGGGATGGATTC-AGCTATCGAATT
1 ATGAAAAGGGATGGCTTCGA-CTATCAAATT
* * *
15502768 ATGAAAAGGGATGGCTTCGGCTATCGATTT
1 ATGAAAAGGGATGGCTTCGACTATCAAATT
* * *
15502798 ATGAAAATGGATGGCTTCGGCTATCGAATT
1 ATGAAAAGGGATGGCTTCGACTATCAAATT
* *
15502828 ATGAAAAGGGATGGCTTCGGCTATCGAATT
1 ATGAAAAGGGATGGCTTCGACTATCAAATT
*
15502858 ATGTAAAGGGATGGCTTCGACTATCAAATT
1 ATGAAAAGGGATGGCTTCGACTATCAAATT
*
15502888 ATGGAAAGGGATGG
1 ATGAAAAGGGATGG
15502902 TGACGACCAT
Statistics
Matches: 175, Mismatches: 16, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
29 1 0.01
30 173 0.99
31 1 0.01
ACGTcount: A:0.33, C:0.12, G:0.28, T:0.27
Consensus pattern (30 bp):
ATGAAAAGGGATGGCTTCGACTATCAAATT
Found at i:15509713 original size:17 final size:17
Alignment explanation
Indices: 15509691--15509732 Score: 59
Period size: 17 Copynumber: 2.4 Consensus size: 17
15509681 GTGAGATGTA
15509691 TGAAAAAGATCA-AAAAG
1 TGAAAAAG-TCACAAAAG
15509708 TGAAAAAGTCACAAAAG
1 TGAAAAAGTCACAAAAG
15509725 TAGAAAAA
1 T-GAAAAA
15509733 CTTAGTCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.13
17 14 0.61
18 6 0.26
ACGTcount: A:0.64, C:0.07, G:0.17, T:0.12
Consensus pattern (17 bp):
TGAAAAAGTCACAAAAG
Found at i:15525253 original size:31 final size:31
Alignment explanation
Indices: 15525217--15525278 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
15525207 AGATAATTTT
15525217 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
15525248 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
15525279 TAATTTTCCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.10, G:0.16, T:0.42
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:15525823 original size:12 final size:12
Alignment explanation
Indices: 15525808--15525866 Score: 55
Period size: 12 Copynumber: 4.7 Consensus size: 12
15525798 GAAAAAAGTG
15525808 AAAAAAAACCGC
1 AAAAAAAACCGC
* **
15525820 AAAAAAAAAACAA
1 -AAAAAAAACCGC
*
15525833 AAAGCAAAAAGCGC
1 AAA--AAAAACCGC
15525847 AAAAAAAACCGC
1 AAAAAAAACCGC
15525859 AAAAAAAA
1 AAAAAAAA
15525867 AGTTGCCTAC
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
12 19 0.51
13 9 0.24
14 9 0.24
ACGTcount: A:0.75, C:0.17, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAAAAAACCGC
Found at i:15525842 original size:38 final size:38
Alignment explanation
Indices: 15525788--15525867 Score: 126
Period size: 39 Copynumber: 2.1 Consensus size: 38
15525778 CTTATTCTTT
*
15525788 AAAAAAAAAAGAAAAAAGTG-AAAAAAAACCGCAAAAA
1 AAAAAAAAAAGAAAAAAGCGCAAAAAAAACCGCAAAAA
*
15525825 AAAAACAAAAAGCAAAAAGCGCAAAAAAAACCGCAAAAA
1 AAAAA-AAAAAGAAAAAAGCGCAAAAAAAACCGCAAAAA
15525864 AAAA
1 AAAA
15525868 GTTGCCTACC
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
37 5 0.13
38 13 0.33
39 21 0.54
ACGTcount: A:0.76, C:0.12, G:0.10, T:0.01
Consensus pattern (38 bp):
AAAAAAAAAAGAAAAAAGCGCAAAAAAAACCGCAAAAA
Found at i:15530210 original size:31 final size:31
Alignment explanation
Indices: 15530118--15530210 Score: 168
Period size: 31 Copynumber: 3.0 Consensus size: 31
15530108 AGATAATTTT
*
15530118 AAAGAGTTTTATTAGGATTCAATTACTCTTA
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
*
15530149 AAAGAGTTTTATTAGGATTCAATGACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
15530180 AAAGAGTTTTATTAGGATTCAATTACTCTTG
1 AAAGAGTTTTATTAGGATTCAATTACTCTTG
15530211 TAATTTACCT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
31 59 1.00
ACGTcount: A:0.33, C:0.10, G:0.16, T:0.41
Consensus pattern (31 bp):
AAAGAGTTTTATTAGGATTCAATTACTCTTG
Found at i:15536130 original size:23 final size:22
Alignment explanation
Indices: 15536103--15536146 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
15536093 CACTTCATCT
*
15536103 TTTTATTCTTATTTTTATTTTTA
1 TTTTATT-TCATTTTTATTTTTA
*
15536126 TTTTATTTCATTTTTCTTTTT
1 TTTTATTTCATTTTTATTTTT
15536147 GTAGAATTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTTATTTCATTTTTATTTTTA
Found at i:15537861 original size:7 final size:8
Alignment explanation
Indices: 15537841--15537870 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
15537831 AAATTAAGTC
15537841 ATTTTTGT
1 ATTTTTGT
15537849 ATTTTTGT
1 ATTTTTGT
*
15537857 ATTTTTTT
1 ATTTTTGT
15537865 ATTTTT
1 ATTTTT
15537871 CCAATATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (8 bp):
ATTTTTGT
Found at i:15542411 original size:24 final size:24
Alignment explanation
Indices: 15542383--15542494 Score: 93
Period size: 24 Copynumber: 4.6 Consensus size: 24
15542373 TACCGATTCT
15542383 CAGCTCGT-ATGAGCTTACCAATTG
1 CAGCTCGTGA-GAGCTTACCAATTG
***
15542407 CAGCTCGTGAGAGCTTATTGATTG
1 CAGCTCGTGAGAGCTTACCAATTG
* * *
15542431 CAGCTCGTGAGAGCTTAGCGATTCT
1 CAGCTCGTGAGAGCTTACCAATT-G
* *
15542456 CAGCTCGT-ATGAGCTTACTAATTTC
1 CAGCTCGTGA-GAGCTTACCAA-TTG
*
15542481 CAGCTCGAGAGAGC
1 CAGCTCGTGAGAGC
15542495 ATAGCGATTC
Statistics
Matches: 72, Mismatches: 11, Indels: 9
0.78 0.12 0.10
Matches are distributed among these distances:
24 41 0.57
25 28 0.39
26 3 0.04
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (24 bp):
CAGCTCGTGAGAGCTTACCAATTG
Found at i:15542469 original size:25 final size:24
Alignment explanation
Indices: 15542376--15542519 Score: 91
Period size: 25 Copynumber: 5.8 Consensus size: 24
15542366 TTAGGATTAC
*
15542376 CGATTCTCAGCTCGTATGAGCTTAC
1 CGATT-TCAGCTCGTATGAGCTTAG
* * *
15542401 CAATTGCAGCTCGTGA-GAGCTTAT
1 CGATTTCAGCTCGT-ATGAGCTTAG
* *
15542425 TGATTGCAGCTCGTGA-GAGCTTAG
1 CGATTTCAGCTCGT-ATGAGCTTAG
15542449 CGATTCTCAGCTCGTATGAGCTTA-
1 CGATT-TCAGCTCGTATGAGCTTAG
* * *
15542473 CTAATTTCCAGCTCG-AGAGAGCATAG
1 C-GATTT-CAGCTCGTA-TGAGCTTAG
15542499 CGA-TTCATAGCTCGTATGAGC
1 CGATTTC--AGCTCGTATGAGC
15542520 ATACATGTAC
Statistics
Matches: 96, Mismatches: 13, Indels: 20
0.74 0.10 0.16
Matches are distributed among these distances:
23 1 0.01
24 46 0.48
25 47 0.49
26 2 0.02
ACGTcount: A:0.24, C:0.23, G:0.24, T:0.29
Consensus pattern (24 bp):
CGATTTCAGCTCGTATGAGCTTAG
Found at i:15557993 original size:22 final size:21
Alignment explanation
Indices: 15557919--15557993 Score: 80
Period size: 23 Copynumber: 3.4 Consensus size: 21
15557909 AATGCTTAGG
15557919 TGGCATTCTGATTT-CCTTTA
1 TGGCATTCTGATTTGCCTTTA
*
15557939 TGGTGTATTCTGATTTTGCCTTTA
1 T-G-GCATTCTGA-TTTGCCTTTA
*
15557963 TGGCAATTCTAATTTGGCCTTTA
1 TGGC-ATTCTGATTT-GCCTTTA
15557986 TGGCATTC
1 TGGCATTC
15557994 CGTTAGCCTT
Statistics
Matches: 46, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
20 1 0.02
21 1 0.02
22 16 0.35
23 21 0.46
24 7 0.15
ACGTcount: A:0.16, C:0.17, G:0.19, T:0.48
Consensus pattern (21 bp):
TGGCATTCTGATTTGCCTTTA
Found at i:15563577 original size:40 final size:41
Alignment explanation
Indices: 15563517--15563604 Score: 124
Period size: 40 Copynumber: 2.2 Consensus size: 41
15563507 AATTCATTAC
* * *
15563517 TTCAGTAATTTCACAGTTCAATGCAGTACAC-ATAACAATA
1 TTCAGTAACTTCACAATTCAATGCAGTACACAAAAACAATA
* *
15563557 TTCAGTAACTTCACAATTCAATTCAGTACTCAAAAACAATA
1 TTCAGTAACTTCACAATTCAATGCAGTACACAAAAACAATA
15563598 TTCAGTA
1 TTCAGTA
15563605 TTCCATAATG
Statistics
Matches: 42, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
40 27 0.64
41 15 0.36
ACGTcount: A:0.41, C:0.20, G:0.08, T:0.31
Consensus pattern (41 bp):
TTCAGTAACTTCACAATTCAATGCAGTACACAAAAACAATA
Found at i:15563582 original size:21 final size:21
Alignment explanation
Indices: 15563517--15563584 Score: 61
Period size: 21 Copynumber: 3.3 Consensus size: 21
15563507 AATTCATTAC
* *
15563517 TTCAGTAATTTCACAGTTCAA
1 TTCAGTAACTTCACAATTCAA
* * *
15563538 TGCAGTACACATAACAA-T--A
1 TTCAGTA-ACTTCACAATTCAA
15563557 TTCAGTAACTTCACAATTCAA
1 TTCAGTAACTTCACAATTCAA
15563578 TTCAGTA
1 TTCAGTA
15563585 CTCAAAAACA
Statistics
Matches: 35, Mismatches: 8, Indels: 8
0.69 0.16 0.16
Matches are distributed among these distances:
18 7 0.20
19 8 0.23
21 15 0.43
22 5 0.14
ACGTcount: A:0.38, C:0.21, G:0.09, T:0.32
Consensus pattern (21 bp):
TTCAGTAACTTCACAATTCAA
Found at i:15563860 original size:26 final size:25
Alignment explanation
Indices: 15563829--15563878 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
15563819 TAGTTCAATA
15563829 ATTCAATTCAAAC-CATTTCAATTTCT
1 ATTCAA-T-AAACACATTTCAATTTCT
*
15563855 ATTCAATAATCACATTTCAATTTC
1 ATTCAATAAACACATTTCAATTTC
15563879 ACTTTCTTAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
24 3 0.14
25 13 0.59
26 6 0.27
ACGTcount: A:0.36, C:0.22, G:0.00, T:0.42
Consensus pattern (25 bp):
ATTCAATAAACACATTTCAATTTCT
Found at i:15565951 original size:60 final size:60
Alignment explanation
Indices: 15565883--15566007 Score: 243
Period size: 60 Copynumber: 2.1 Consensus size: 60
15565873 TTTATCATAA
15565883 TATACTTCCCAATGTTGCCATAACTCAAAATTTCCCTTTTTGTCACTTTATTTCCTTATT
1 TATACTTCCCAATGTTGCCATAACTCAAAATTTCCCTTTTTGTCACTTTATTTCCTTATT
15565943 TATACTTCCCAATGTTGCCATAACTCAAAATTTCCCTTTTTGTCACTTTATTTCCTTATT
1 TATACTTCCCAATGTTGCCATAACTCAAAATTTCCCTTTTTGTCACTTTATTTCCTTATT
15566003 T-TACT
1 TATACT
15566008 ATATCAAGGA
Statistics
Matches: 65, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
59 4 0.06
60 61 0.94
ACGTcount: A:0.23, C:0.25, G:0.05, T:0.47
Consensus pattern (60 bp):
TATACTTCCCAATGTTGCCATAACTCAAAATTTCCCTTTTTGTCACTTTATTTCCTTATT
Found at i:15576128 original size:42 final size:41
Alignment explanation
Indices: 15576081--15576230 Score: 138
Period size: 42 Copynumber: 3.6 Consensus size: 41
15576071 AGGCTGAATA
*
15576081 GAAGCTCATGGGAGCTAAACAGAAACCCATAAGGGTTGAACG
1 GAAGCTCAT-AGAGCTAAACAGAAACCCATAAGGGTTGAACG
* * * * ** * * *
15576123 GAAGCTCGTAAAAGCTGAACGGAAATTCATAAAGGTTAAACA
1 GAAGCTCAT-AGAGCTAAACAGAAACCCATAAGGGTTGAACG
*
15576165 GAAGCTCAATAGAGCTAAACAGAAACCCATTAGGGTTGAACG
1 GAAGCTC-ATAGAGCTAAACAGAAACCCATAAGGGTTGAACG
* * *
15576207 GAAACTCATATGAGTTAAATAGAA
1 GAAGCTCATA-GAGCTAAACAGAA
15576231 GCTCGTGAGA
Statistics
Matches: 82, Mismatches: 24, Indels: 4
0.75 0.22 0.04
Matches are distributed among these distances:
41 3 0.04
42 78 0.95
43 1 0.01
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.18
Consensus pattern (41 bp):
GAAGCTCATAGAGCTAAACAGAAACCCATAAGGGTTGAACG
Found at i:15588562 original size:27 final size:27
Alignment explanation
Indices: 15588532--15588612 Score: 101
Period size: 27 Copynumber: 3.0 Consensus size: 27
15588522 GTAGCTATCA
* * *
15588532 ATGAAAAAGAAGTCTTTTTGGTGATCT
1 ATGAAAAAGAAGCCTTTCTGGCGATCT
*
15588559 ATGAAAATAG-AGCCTTTGTGGCGATCT
1 ATGAAAA-AGAAGCCTTTCTGGCGATCT
*
15588586 ATGAAAAGGAAGCCTTTCTGGCGATCT
1 ATGAAAAAGAAGCCTTTCTGGCGATCT
15588613 CTAAAGAATG
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
26 1 0.02
27 44 0.94
28 2 0.04
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (27 bp):
ATGAAAAAGAAGCCTTTCTGGCGATCT
Found at i:15593173 original size:22 final size:21
Alignment explanation
Indices: 15593138--15593178 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
15593128 AGACTATCGA
**
15593138 GGGTGTCGTGACATCGAAGGTT
1 GGGTGTCGCAACATC-AAGGTT
15593160 GGGTGTCGCAACATCAAGG
1 GGGTGTCGCAACATCAAGG
15593179 CTTGACAAGG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.22, C:0.17, G:0.39, T:0.22
Consensus pattern (21 bp):
GGGTGTCGCAACATCAAGGTT
Found at i:15597392 original size:24 final size:24
Alignment explanation
Indices: 15597348--15597394 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
15597338 CTTATTTAAC
*
15597348 AATTCAAATATTATAATAATAAAA
1 AATTCAAATATAATAATAATAAAA
*
15597372 AATTCAAATCATAATTA-AATAAA
1 AATTCAAAT-ATAATAATAATAAA
15597395 TTTTACTATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (24 bp):
AATTCAAATATAATAATAATAAAA
Found at i:15600752 original size:14 final size:14
Alignment explanation
Indices: 15600733--15600761 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
15600723 AAAACAGATT
15600733 TAACTATACTAAAA
1 TAACTATACTAAAA
15600747 TAACTATACTAAAA
1 TAACTATACTAAAA
15600761 T
1 T
15600762 GATCATATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (14 bp):
TAACTATACTAAAA
Found at i:15613334 original size:14 final size:14
Alignment explanation
Indices: 15613315--15613342 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
15613305 TAAGGTTATA
15613315 TTTAATAATTCATT
1 TTTAATAATTCATT
15613329 TTTAATAATTCATT
1 TTTAATAATTCATT
15613343 AATAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:15616006 original size:17 final size:19
Alignment explanation
Indices: 15615984--15616033 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
15615974 GTGGAGGTGG
15615984 CAATTTT-TCTAT-CACTT
1 CAATTTTCTCTATCCACTT
15616001 CAATTTTTGCTCTATCCACTT
1 CAA-TTTT-CTCTATCCACTT
15616022 CAATTTCTCTCT
1 CAATTT-TCTCT
15616034 TCGATATCCT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
17 3 0.11
18 4 0.14
20 12 0.43
21 9 0.32
ACGTcount: A:0.20, C:0.28, G:0.02, T:0.50
Consensus pattern (19 bp):
CAATTTTCTCTATCCACTT
Found at i:15616033 original size:20 final size:20
Alignment explanation
Indices: 15615991--15616033 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 20
15615981 TGGCAATTTT
*
15615991 TCTATCACTTCAATTTTTGC
1 TCTATCACTTCAATTTCTGC
15616011 TCTATCCACTTCAATTTCT-C
1 TCTAT-CACTTCAATTTCTGC
15616031 TCT
1 TCT
15616034 TCGATATCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 9 0.43
21 12 0.57
ACGTcount: A:0.19, C:0.30, G:0.02, T:0.49
Consensus pattern (20 bp):
TCTATCACTTCAATTTCTGC
Found at i:15625450 original size:16 final size:16
Alignment explanation
Indices: 15625429--15625460 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
15625419 AGGTAAGAAC
15625429 CCAATTATCAAATCAT
1 CCAATTATCAAATCAT
15625445 CCAATTATCAAATCAT
1 CCAATTATCAAATCAT
15625461 TGAACTACTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (16 bp):
CCAATTATCAAATCAT
Found at i:15631002 original size:61 final size:58
Alignment explanation
Indices: 15630895--15631010 Score: 142
Period size: 61 Copynumber: 1.9 Consensus size: 58
15630885 ATCACTTTAA
* * *
15630895 TATTAAATAAATATAATACTTATCAAGATAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATAAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAACATTAAATC
* * * *
15630953 TATTAAATTAATAGAATACTTTTCTATAAGATGAATATTAAATTTAATTTAACATTAA
1 TATTAAATAAATAGAATACTTATC---AAGATAAATATTAAATTAAATTTAACATTAA
15631011 GATAATCACT
Statistics
Matches: 48, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
58 21 0.44
61 27 0.56
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.41
Consensus pattern (58 bp):
TATTAAATAAATAGAATACTTATCAAGATAAATATTAAATTAAATTTAACATTAAATC
Found at i:15631403 original size:20 final size:19
Alignment explanation
Indices: 15631361--15631403 Score: 50
Period size: 20 Copynumber: 2.2 Consensus size: 19
15631351 TTTGACTAGT
* * *
15631361 TTTTGGGTCTCGGTCTTAG
1 TTTTGGGTCTCGGGCCTAA
15631380 TTTTGGGTTCTCGGGCCTAA
1 TTTTGGG-TCTCGGGCCTAA
15631400 TTTT
1 TTTT
15631404 CAATCTAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.07, C:0.16, G:0.28, T:0.49
Consensus pattern (19 bp):
TTTTGGGTCTCGGGCCTAA
Found at i:15637420 original size:27 final size:27
Alignment explanation
Indices: 15637389--15637633 Score: 235
Period size: 27 Copynumber: 9.1 Consensus size: 27
15637379 TTACACTATT
* * *
15637389 ATGACTAAAATACCCCCATAAGGTAGA
1 ATGACTGAAATACCCCCATAGGGTAAA
*
15637416 ATGACTGAAATACCCCCATAGGATAAA
1 ATGACTGAAATACCCCCATAGGGTAAA
** *
15637443 ATGACCAAAATACCCCCACAGGGTAAA
1 ATGACTGAAATACCCCCATAGGGTAAA
* *
15637470 ATGACTGAAATACCGCTATAGGGTAAA
1 ATGACTGAAATACCCCCATAGGGTAAA
* *** *
15637497 ATGCCTGAAATACCATTATAGGGTAGA
1 ATGACTGAAATACCCCCATAGGGTAAA
* * *
15637524 ATGA-TCGAAATACCTCTATAGAGTAAA
1 ATGACT-GAAATACCCCCATAGGGTAAA
*
15637551 ATGACCT-AAATACCCCCTTAGGGTAAA
1 ATGA-CTGAAATACCCCCATAGGGTAAA
*
15637578 ATGA-TCGAAATACCCCCATATGGTAAA
1 ATGACT-GAAATACCCCCATAGGGTAAA
** * *
15637605 ATGACCAAAATACCCTCATAGTGTAAA
1 ATGACTGAAATACCCCCATAGGGTAAA
15637632 AT
1 AT
15637634 CACTTTTATA
Statistics
Matches: 179, Mismatches: 33, Indels: 12
0.80 0.15 0.05
Matches are distributed among these distances:
25 1 0.01
26 1 0.01
27 176 0.98
29 1 0.01
ACGTcount: A:0.42, C:0.21, G:0.16, T:0.21
Consensus pattern (27 bp):
ATGACTGAAATACCCCCATAGGGTAAA
Found at i:15637781 original size:26 final size:26
Alignment explanation
Indices: 15637752--15637828 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
15637742 AGTATACTGA
*
15637752 TACTGGCAGCTTTGCTACGATATTGT
1 TACTGGCAGCTTTGCTACGATATTAT
* *
15637778 TACTGGCAGCTTTGCTGCGATACTAT
1 TACTGGCAGCTTTGCTACGATATTAT
15637804 TACTGGCAGCTTTGCTACGATATTA
1 TACTGGCAGCTTTGCTACGATATTA
15637829 GTGTGTTGGC
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.21, C:0.21, G:0.22, T:0.36
Consensus pattern (26 bp):
TACTGGCAGCTTTGCTACGATATTAT
Found at i:15637960 original size:33 final size:33
Alignment explanation
Indices: 15637921--15637997 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 33
15637911 TGCATTATTG
* * *
15637921 CACTGTACTGATACTGTATTGGGTTAAGGCCCA
1 CACTGTACTGATACTGAATAGGGCTAAGGCCCA
* *
15637954 CACTGTACTGTTACTGAATAGGGCTCAGGCCCA
1 CACTGTACTGATACTGAATAGGGCTAAGGCCCA
*
15637987 GACTGTTACTG
1 CACTG-TACTG
15637998 CATGTTGTAT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
33 32 0.86
34 5 0.14
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (33 bp):
CACTGTACTGATACTGAATAGGGCTAAGGCCCA
Found at i:15641613 original size:28 final size:29
Alignment explanation
Indices: 15641581--15641637 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 29
15641571 TACTTTTAAA
* *
15641581 TAACAACTAATATCTCAA-ATTCATCAAT
1 TAACAACTAAAATCACAAGATTCATCAAT
* *
15641609 TAACATCTAAAATCACAAGTTTCATCAAT
1 TAACAACTAAAATCACAAGATTCATCAAT
15641638 GGAAATATTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
28 15 0.62
29 9 0.38
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.32
Consensus pattern (29 bp):
TAACAACTAAAATCACAAGATTCATCAAT
Found at i:15652721 original size:8 final size:7
Alignment explanation
Indices: 15652701--15652758 Score: 66
Period size: 7 Copynumber: 8.0 Consensus size: 7
15652691 TTAGCCTCTC
15652701 CATTTTT
1 CATTTTT
15652708 -ACTTTTT
1 CA-TTTTT
15652715 CATTTTTT
1 CA-TTTTT
15652723 CATTTTT
1 CATTTTT
15652730 CA-TTTT
1 CATTTTT
15652736 CATTTTTT
1 CA-TTTTT
15652744 CATTTTT
1 CATTTTT
15652751 CATATTTT
1 CAT-TTTT
15652759 TTCTAACTTA
Statistics
Matches: 45, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
6 7 0.16
7 20 0.44
8 18 0.40
ACGTcount: A:0.16, C:0.14, G:0.00, T:0.71
Consensus pattern (7 bp):
CATTTTT
Found at i:15652735 original size:21 final size:21
Alignment explanation
Indices: 15652701--15652753 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
15652691 TTAGCCTCTC
*
15652701 CATTTTTACTTTTTCATTTTTT
1 CATTTTT-CATTTTCATTTTTT
15652723 CATTTTTCATTTTCATTTTTT
1 CATTTTTCATTTTCATTTTTT
15652744 CATTTTTCAT
1 CATTTTTCAT
15652754 ATTTTTTCTA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
21 23 0.77
22 7 0.23
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (21 bp):
CATTTTTCATTTTCATTTTTT
Found at i:15653627 original size:20 final size:22
Alignment explanation
Indices: 15653602--15653645 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
15653592 TGGCCTCTCC
*
15653602 TTTTCTT-T-TCTTTTTTCCTT
1 TTTTCTTCTCTCTTTTTTCATT
15653622 TTTTCTTCTCTCTTTTTTCATT
1 TTTTCTTCTCTCTTTTTTCATT
15653644 TT
1 TT
15653646 CATTTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 7 0.33
21 1 0.05
22 13 0.62
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.77
Consensus pattern (22 bp):
TTTTCTTCTCTCTTTTTTCATT
Found at i:15653665 original size:7 final size:7
Alignment explanation
Indices: 15653607--15653674 Score: 57
Period size: 7 Copynumber: 9.3 Consensus size: 7
15653597 TCTCCTTTTC
15653607 TTTTCTT
1 TTTTCTT
15653614 TTTTCCTT
1 TTTT-CTT
15653622 TTTTCTT
1 TTTTCTT
* *
15653629 CTCTCTT
1 TTTTCTT
*
15653636 TTTTC-A
1 TTTTCTT
15653642 TTTTCATT
1 TTTTC-TT
15653650 TTTTCTCT
1 TTTTCT-T
15653658 TTCTTCTT
1 TT-TTCTT
*
15653666 TTTGCTT
1 TTTTCTT
15653673 TT
1 TT
15653675 GATTTTGATT
Statistics
Matches: 49, Mismatches: 7, Indels: 10
0.74 0.11 0.15
Matches are distributed among these distances:
6 5 0.10
7 22 0.45
8 18 0.37
9 4 0.08
ACGTcount: A:0.03, C:0.21, G:0.01, T:0.75
Consensus pattern (7 bp):
TTTTCTT
Found at i:15653675 original size:6 final size:6
Alignment explanation
Indices: 15653665--15653698 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
15653655 TCTTTCTTCT
*
15653665 TTTTGC TTTTGA TTTTGA TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
15653699 TATTCCCCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.12, C:0.03, G:0.15, T:0.71
Consensus pattern (6 bp):
TTTTGA
Found at i:15657212 original size:34 final size:34
Alignment explanation
Indices: 15657169--15657235 Score: 134
Period size: 34 Copynumber: 2.0 Consensus size: 34
15657159 TCTCACGAAG
15657169 GTATTCCGAAAGTGATCCACTATCCTGCACGGAT
1 GTATTCCGAAAGTGATCCACTATCCTGCACGGAT
15657203 GTATTCCGAAAGTGATCCACTATCCTGCACGGA
1 GTATTCCGAAAGTGATCCACTATCCTGCACGGA
15657236 GGTGAAAACC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (34 bp):
GTATTCCGAAAGTGATCCACTATCCTGCACGGAT
Found at i:15658572 original size:19 final size:19
Alignment explanation
Indices: 15658548--15658584 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
15658538 TAAGTATGGA
15658548 GGAATTTCTTGATTGGGCT
1 GGAATTTCTTGATTGGGCT
* *
15658567 GGAATTTGTTTATTGGGC
1 GGAATTTCTTGATTGGGC
15658585 CTCGCCTTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.16, C:0.08, G:0.32, T:0.43
Consensus pattern (19 bp):
GGAATTTCTTGATTGGGCT
Found at i:15675620 original size:46 final size:47
Alignment explanation
Indices: 15675570--15675690 Score: 128
Period size: 46 Copynumber: 2.6 Consensus size: 47
15675560 ATCATGTTTA
*
15675570 TTATTTCT-AATTTATCA-ATATTAT-TATTTTAAATTCATCATTAACT
1 TTATTT-TAAATTTATCATATA-TATCTATTTCAAATTCATCATTAACT
* *
15675616 TTATTTTAAATTTATCATGTATATCTATTTCAAATTTATCATTAA-T
1 TTATTTTAAATTTATCATATATATCTATTTCAAATTCATCATTAACT
* *
15675662 AT-TTTTAAATTTATTATATACTAT-TATTT
1 TTATTTTAAATTTATCATATA-TATCTATTT
15675691 TGGATTTATC
Statistics
Matches: 65, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
45 22 0.34
46 23 0.35
47 20 0.31
ACGTcount: A:0.35, C:0.08, G:0.01, T:0.56
Consensus pattern (47 bp):
TTATTTTAAATTTATCATATATATCTATTTCAAATTCATCATTAACT
Found at i:15675622 original size:69 final size:69
Alignment explanation
Indices: 15675540--15675701 Score: 195
Period size: 69 Copynumber: 2.3 Consensus size: 69
15675530 AAGTGTATTG
* * * *
15675540 TATATTATTATTTTAGATTTATCATGTTTAT-TATTTCTAATTTATCAATATTATTATTTTAAAT
1 TATACTATTATTTTAGATTTATCATGTATATCTATTTCAAATTTATCAATAATA-T-TTTTAAAT
15675604 TCATCA
64 TCATCA
* *
15675610 T-TAACT-TTATTTTAAATTTATCATGTATATCTATTTCAAATTTATCATTAATATTTTTAAATT
1 TAT-ACTATTATTTTAGATTTATCATGTATATCTATTTCAAATTTATCAATAATATTTTTAAATT
* *
15675673 TATTA
65 CATCA
*
15675678 TATACTATTATTTTGGATTTATCA
1 TATACTATTATTTTAGATTTATCA
15675702 CATATGATTA
Statistics
Matches: 78, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
68 16 0.21
69 40 0.51
70 22 0.28
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.56
Consensus pattern (69 bp):
TATACTATTATTTTAGATTTATCATGTATATCTATTTCAAATTTATCAATAATATTTTTAAATTC
ATCA
Found at i:15675650 original size:24 final size:23
Alignment explanation
Indices: 15675545--15675768 Score: 110
Period size: 23 Copynumber: 9.7 Consensus size: 23
15675535 TATTGTATAT
* * *
15675545 TATTATTTTAGATTTATCATGTT
1 TATTATTTCAAATTTATCATGTA
* *
15675568 TATTATTTCTAATTTATCA-ATA
1 TATTATTTCAAATTTATCATGTA
* *
15675590 TTATTATTTTAAATTCATCAT-TA
1 -TATTATTTCAAATTTATCATGTA
*
15675613 -ACTTTATTTTAAATTTATCATGTA
1 TA--TTATTTCAAATTTATCATGTA
15675637 TATCTATTTCAAATTTATCAT-TAA
1 TAT-TATTTCAAATTTATCATGT-A
* *
15675661 TATT-TTT-AAATTTATTATATA
1 TATTATTTCAAATTTATCATGTA
*** **
15675682 CTATTATTTTGGATTTATCACATA
1 -TATTATTTCAAATTTATCATGTA
**
15675706 TGATTA-TTCTAGAA-TTATCATCAA
1 T-ATTATTTC-A-AATTTATCATGTA
*
15675730 AATT-TTT-AAATTTTAT-ATGTA
1 TATTATTTCAAA-TTTATCATGTA
15675751 TTATTATTTCAAATTTAT
1 -TATTATTTCAAATTTAT
15675769 TATAATTAAT
Statistics
Matches: 155, Mismatches: 25, Indels: 42
0.70 0.11 0.19
Matches are distributed among these distances:
20 2 0.01
21 16 0.10
22 16 0.10
23 73 0.47
24 46 0.30
25 2 0.01
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.54
Consensus pattern (23 bp):
TATTATTTCAAATTTATCATGTA
Found at i:15675837 original size:2 final size:2
Alignment explanation
Indices: 15675830--15675865 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
15675820 TTGTACATTC
15675830 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15675866 TTAATTCATG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:15675905 original size:14 final size:14
Alignment explanation
Indices: 15675886--15675914 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
15675876 TATTGTTTTA
15675886 AACTTCATCCATAT
1 AACTTCATCCATAT
15675900 AACTTCATCCATAT
1 AACTTCATCCATAT
15675914 A
1 A
15675915 CATACTGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.28, G:0.00, T:0.34
Consensus pattern (14 bp):
AACTTCATCCATAT
Found at i:15677394 original size:20 final size:20
Alignment explanation
Indices: 15677369--15677419 Score: 102
Period size: 20 Copynumber: 2.5 Consensus size: 20
15677359 TGGCATTTTG
15677369 ATTGTATGGATTATTATCAT
1 ATTGTATGGATTATTATCAT
15677389 ATTGTATGGATTATTATCAT
1 ATTGTATGGATTATTATCAT
15677409 ATTGTATGGAT
1 ATTGTATGGAT
15677420 CTTTTTATGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.29, C:0.04, G:0.18, T:0.49
Consensus pattern (20 bp):
ATTGTATGGATTATTATCAT
Found at i:15683084 original size:308 final size:308
Alignment explanation
Indices: 15682526--15697613 Score: 30108
Period size: 308 Copynumber: 49.0 Consensus size: 308
15682516 TCCAACACAT
*
15682526 ATGTCACTGTAATATGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15682591 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15682656 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15682721 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15682786 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15682834 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15682899 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15682964 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15683029 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15683094 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15683142 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15683207 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15683272 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15683337 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15683402 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15683450 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15683515 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15683580 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15683645 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15683710 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15683758 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15683823 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15683888 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15683953 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15684018 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15684066 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15684131 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15684196 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15684261 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
*
15684326 TTTATGACTTTCAGAAGCTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15684374 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15684439 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15684504 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15684569 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15684634 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15684682 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15684747 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15684812 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15684877 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15684942 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15684990 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15685055 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15685120 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15685185 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15685250 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15685298 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15685363 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15685428 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15685493 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15685558 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15685606 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15685671 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15685736 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15685801 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15685866 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15685914 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15685979 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15686044 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15686109 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15686174 TTTATGACTTTCAGAAG-TTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15686221 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15686286 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15686351 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15686416 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15686481 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15686529 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15686594 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15686659 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15686724 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15686789 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15686837 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15686902 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15686967 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15687032 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15687097 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15687145 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15687210 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15687275 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15687340 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15687405 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15687453 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15687518 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15687583 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15687648 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15687713 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15687761 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15687826 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15687891 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15687956 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15688021 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15688069 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15688134 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15688199 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15688264 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15688329 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15688377 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15688442 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15688507 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15688572 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15688637 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15688685 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15688750 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15688815 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15688880 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15688945 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15688993 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15689058 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15689123 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15689188 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15689253 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15689301 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15689366 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15689431 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15689496 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15689561 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15689609 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15689674 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15689739 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15689804 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15689869 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15689917 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15689982 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15690047 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15690112 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15690177 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15690225 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15690290 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15690355 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15690420 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15690485 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15690533 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15690598 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15690663 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15690728 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15690793 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15690841 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15690906 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15690971 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15691036 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15691101 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15691149 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15691214 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15691279 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15691344 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15691409 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15691457 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15691522 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15691587 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15691652 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15691717 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15691765 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15691830 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15691895 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15691960 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15692025 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15692073 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15692138 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15692203 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15692268 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15692333 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15692381 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15692446 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15692511 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15692576 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15692641 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15692689 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15692754 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15692819 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15692884 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15692949 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15692997 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15693062 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15693127 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15693192 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15693257 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15693305 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15693370 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15693435 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15693500 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15693565 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15693613 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15693678 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15693743 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15693808 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15693873 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15693921 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15693986 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15694051 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15694116 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15694181 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15694229 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15694294 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15694359 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15694424 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15694489 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15694537 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15694602 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15694667 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15694732 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15694797 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15694845 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15694910 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15694975 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15695040 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15695105 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15695153 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15695218 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15695283 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15695348 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15695413 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15695461 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
*
15695526 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15695591 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15695656 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15695721 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15695769 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15695834 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15695899 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15695964 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15696029 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15696077 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15696142 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15696207 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15696272 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15696337 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15696385 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15696450 TAAGTATTCAATATAACGTATAATGTATATAATTATCA-GACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15696514 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15696579 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15696644 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15696692 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
*
15696757 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15696822 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15696887 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15696952 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15697000 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
15697065 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15697130 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15697195 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15697260 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
15697308 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
1 ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
* *
15697373 TAAGTATTAAATATAACGTATAATGTATATAATTATCATGACAAAAGGAAATGGTATGATAATTT
66 TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
15697438 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
131 TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
15697503 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
196 TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
15697568 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAA
261 TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAA
15697614 GCCAACGACC
Statistics
Matches: 14769, Mismatches: 9, Indels: 4
1.00 0.00 0.00
Matches are distributed among these distances:
307 613 0.04
308 14156 0.96
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (308 bp):
ATGTCACTGTAATCTGCTGAGTTAGAAAGCAAAAGAGTGACTGTTAGACAAGACCGAACATGACT
TAAGTATTCAATATAACGTATAATGTATATAATTATCATGACAGAAGGAAATGGTATGATAATTT
TTCTCCGAAAATTAACAGGTTTTGAAATGTCTACACTTTCAGTGAACAGATATAGACCATAAACC
TCAATAAGCAAGTACCTGCTACATAGCATCTTAATTTTTGGAATCAGGAAATGTTAGCTTCGTAT
TTTATGACTTTCAGAAGTTTTCTAGAAAAGTTTAATACAGCTACAAAC
Found at i:15698875 original size:3 final size:3
Alignment explanation
Indices: 15698867--15698907 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
15698857 TTTTCATGGT
15698867 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
15698908 TATGCTTTCC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:15699153 original size:16 final size:16
Alignment explanation
Indices: 15699132--15699164 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
15699122 TTCGCTGTAT
*
15699132 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCATAA
15699148 TGGAATAGAGGCATAA
1 TGGAATAGAGGCATAA
15699164 T
1 T
15699165 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.33, T:0.21
Consensus pattern (16 bp):
TGGAATAGAGGCATAA
Found at i:15699411 original size:18 final size:18
Alignment explanation
Indices: 15699375--15699419 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
15699365 TTAATCATAT
*
15699375 TTAAATATAATTATTATTA
1 TTAAATAT-ATTATAATTA
15699394 TTAAATATATTATAATTA
1 TTAAATATATTATAATTA
15699412 --AAATATAT
1 TTAAATATAT
15699420 AATTTAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 8 0.32
18 9 0.36
19 8 0.32
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
TTAAATATATTATAATTA
Found at i:15699426 original size:14 final size:15
Alignment explanation
Indices: 15699360--15699428 Score: 56
Period size: 15 Copynumber: 4.7 Consensus size: 15
15699350 TCAATAATAA
*
15699360 ATAATTTAATCATATT
1 ATAATTAAAT-ATATT
*
15699376 -TAAATATAAT-TATT
1 ATAATTA-AATATATT
*
15699390 ATTATTAAATATATT
1 ATAATTAAATATATT
15699405 ATAATTAAA-ATA-T
1 ATAATTAAATATATT
*
15699418 ATAATTTAATA
1 ATAATTAAATA
15699429 AAATTCTTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
13 9 0.21
14 11 0.26
15 20 0.47
16 3 0.07
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.48
Consensus pattern (15 bp):
ATAATTAAATATATT
Found at i:15699546 original size:14 final size:15
Alignment explanation
Indices: 15699507--15699548 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
15699497 AATTAGCATA
*
15699507 ATTATTATTAAATAT
1 ATTATAATTAAATAT
15699522 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
15699536 A-TATAATTTAATA
1 ATTATAATTAAATA
15699549 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:15699600 original size:120 final size:120
Alignment explanation
Indices: 15699387--15699791 Score: 690
Period size: 120 Copynumber: 3.4 Consensus size: 120
15699377 AAATATAATT
*
15699387 ATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAATATTCT
1 ATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCT
*
15699452 TATATGAATTTACTCAAATCATAATATATGATACTATAAAATATAAATTAGCATA
66 TATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTAGCATA
15699507 ATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCT
1 ATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCT
* *
15699572 TATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTAACATA
66 TATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTAGCATA
*
15699627 ATTATTATTAAATATATTTTAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCT
1 ATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCT
* *
15699692 TATA--AATTTACTCAAATCATAATATATGATACTATAAAAGAT-AATTTGAAATA
66 TATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTAG-CATA
* * *
15699745 ATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 ATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
15699792 TAAAATAATT
Statistics
Matches: 273, Mismatches: 11, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
117 3 0.01
118 86 0.32
120 184 0.67
ACGTcount: A:0.49, C:0.05, G:0.02, T:0.43
Consensus pattern (120 bp):
ATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCT
TATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTAGCATA
Found at i:15699659 original size:18 final size:17
Alignment explanation
Indices: 15699638--15699672 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
15699628 TTATTATTAA
*
15699638 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
15699656 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
15699673 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:15699899 original size:88 final size:90
Alignment explanation
Indices: 15699798--15700011 Score: 290
Period size: 88 Copynumber: 2.4 Consensus size: 90
15699788 AATTTAAAAT
* * * * * *
15699798 AATTA-TAACTAATAGATTTTCTTATATGAATTTGTATAATTTAAAATAATTATTATTACATATA
1 AATTATTAA-TAATAAATTTTCTTATATGAATTTATACAATTTAAAAAAATTAATATTAAATATA
15699862 ATTTAAT-A-ATATATAATTTCATAA
65 ATTTAATAAGATATATAATTTCATAA
* *
15699886 AATTATTGATAATAAATTTTCTTATATGAATTTATACAATTTAAAAAAATTAATATTAAATTTAA
1 AATTATTAATAATAAATTTTCTTATATGAATTTATACAATTTAAAAAAATTAATATTAAATATAA
15699951 TTTAATAATGATATATAATTTCATAA
66 TTTAATAA-GATATATAATTTCATAA
* *
15699977 AATTCTTAATAATAAAATGTTCTTATATGAATTTA
1 AATTATTAATAAT-AAATTTTCTTATATGAATTTA
15700012 CTAAAATCAA
Statistics
Matches: 110, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
88 60 0.55
89 3 0.03
91 27 0.25
92 20 0.18
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.46
Consensus pattern (90 bp):
AATTATTAATAATAAATTTTCTTATATGAATTTATACAATTTAAAAAAATTAATATTAAATATAA
TTTAATAAGATATATAATTTCATAA
Found at i:15699935 original size:47 final size:46
Alignment explanation
Indices: 15699773--15700011 Score: 149
Period size: 47 Copynumber: 5.3 Consensus size: 46
15699763 TTAATTAAAA
* * * *
15699773 TATATG-ATTTAATAAAATTTAAAATAATTATAACTAATAGATTTTCT
1 TATATGAATTT-ATATAATTTAAAAAAATTATTA-TAATAAATTTTCT
* * * * * **
15699820 TATATGAATTTGTATAATTTAAAATAATTATTATTACATATAAT-T
1 TATATGAATTTATATAATTTAAAAAAATTATTATAATAAATTTTCT
* *
15699865 TA-AT-AA--TATATAATTTCATAAAATTATTGATAATAAATTTTCT
1 TATATGAATTTATATAATTTAAAAAAATTATT-ATAATAAATTTTCT
* *
15699908 TATATGAATTTATACAATTTAAAAAAATTA--ATATTAAATTTAAT-T
1 TATATGAATTTATATAATTTAAAAAAATTATTATAATAAATTT--TCT
* * * * *
15699953 TA-AT-AATGATATATAATTTCATAAAATTCTTAATAATAAAATGTTCT
1 TATATGAAT-TTATATAATTTAAAAAAATTATT-ATAAT-AAATTTTCT
15700000 TATATGAATTTA
1 TATATGAATTTA
15700012 CTAAAATCAA
Statistics
Matches: 146, Mismatches: 29, Indels: 33
0.70 0.14 0.16
Matches are distributed among these distances:
41 18 0.12
42 7 0.05
43 8 0.05
44 32 0.22
45 8 0.05
46 8 0.05
47 49 0.34
48 13 0.09
49 3 0.02
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.46
Consensus pattern (46 bp):
TATATGAATTTATATAATTTAAAAAAATTATTATAATAAATTTTCT
Found at i:15699971 original size:44 final size:43
Alignment explanation
Indices: 15699832--15699980 Score: 108
Period size: 44 Copynumber: 3.4 Consensus size: 43
15699822 TATGAATTTG
* * * *
15699832 TATAATTTAAAATAATTATTATTACATATAATTTAAT-A-ATA
1 TATAATTTAAAAAAATTAATATTAAATTTAATTTAATAATATA
* * * *
15699873 TATAATTTCATAAAATTATTGATAATAAATTT--TCTTATATGAATTTA
1 TATAATTT-A-AAAA-AATTAATATTAAATTTAAT-TTA-AT-AATATA
*
15699920 TACAATTTAAAAAAATTAATATTAAATTTAATTTAATAATGATA
1 TATAATTTAAAAAAATTAATATTAAATTTAATTTAATAAT-ATA
* *
15699964 TATAATTTCATAAAATT
1 TATAATTTAAAAAAATT
15699981 CTTAATAATA
Statistics
Matches: 81, Mismatches: 16, Indels: 19
0.70 0.14 0.16
Matches are distributed among these distances:
41 8 0.10
42 2 0.02
43 9 0.11
44 43 0.53
45 7 0.09
46 3 0.04
47 9 0.11
ACGTcount: A:0.49, C:0.03, G:0.02, T:0.46
Consensus pattern (43 bp):
TATAATTTAAAAAAATTAATATTAAATTTAATTTAATAATATA
Found at i:15703044 original size:33 final size:33
Alignment explanation
Indices: 15703007--15703072 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
15702997 ATCATAAAGC
15703007 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
15703040 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
1 ATGTATAATTGACCTAAAATTAATTGTTGGTAT
15703073 TTGTTAGATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.36, C:0.06, G:0.15, T:0.42
Consensus pattern (33 bp):
ATGTATAATTGACCTAAAATTAATTGTTGGTAT
Found at i:15703372 original size:37 final size:37
Alignment explanation
Indices: 15703287--15703373 Score: 147
Period size: 37 Copynumber: 2.4 Consensus size: 37
15703277 GTATAAATAT
* * *
15703287 ATTGATTAGTTCATTAAAGCATGTTCAAAGTTTTAAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
15703324 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
15703361 ATTGATTAGTTTA
1 ATTGATTAGTTTA
15703374 TTTATTTATG
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 47 1.00
ACGTcount: A:0.36, C:0.08, G:0.15, T:0.41
Consensus pattern (37 bp):
ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
Found at i:15704517 original size:35 final size:35
Alignment explanation
Indices: 15704471--15704540 Score: 131
Period size: 35 Copynumber: 2.0 Consensus size: 35
15704461 AACATTTGAT
*
15704471 TTCCATTTTCATATTCTACTGACTAACAAATCAAG
1 TTCCAGTTTCATATTCTACTGACTAACAAATCAAG
15704506 TTCCAGTTTCATATTCTACTGACTAACAAATCAAG
1 TTCCAGTTTCATATTCTACTGACTAACAAATCAAG
15704541 AACAATTTCC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.34, C:0.23, G:0.07, T:0.36
Consensus pattern (35 bp):
TTCCAGTTTCATATTCTACTGACTAACAAATCAAG
Found at i:15704568 original size:22 final size:23
Alignment explanation
Indices: 15704530--15704591 Score: 101
Period size: 22 Copynumber: 2.7 Consensus size: 23
15704520 TCTACTGACT
15704530 AACAAATCAAGAACAATTTCCAG
1 AACAAATCAAGAACAATTTCCAG
15704553 CAAC-AATCAA-AACAATTTCCAG
1 -AACAAATCAAGAACAATTTCCAG
15704575 AACAAATCAAGAACAAT
1 AACAAATCAAGAACAAT
15704592 ATCAAAACAA
Statistics
Matches: 36, Mismatches: 0, Indels: 5
0.88 0.00 0.12
Matches are distributed among these distances:
21 3 0.08
22 18 0.50
23 12 0.33
24 3 0.08
ACGTcount: A:0.55, C:0.23, G:0.06, T:0.16
Consensus pattern (23 bp):
AACAAATCAAGAACAATTTCCAG
Found at i:15704600 original size:22 final size:23
Alignment explanation
Indices: 15704530--15704603 Score: 91
Period size: 22 Copynumber: 3.3 Consensus size: 23
15704520 TCTACTGACT
*
15704530 AACAAATCAAGAACAATTTCCAGC
1 AACAAATCAAGAACAATTTCCA-A
*
15704554 AAC-AATCAA-AACAATTTCCAG
1 AACAAATCAAGAACAATTTCCAA
*
15704575 AACAAATCAAGAACAATAT-CAA
1 AACAAATCAAGAACAATTTCCAA
15704597 AACAAAT
1 AACAAAT
15704604 GCAACAATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
21 3 0.07
22 26 0.58
23 13 0.29
24 3 0.07
ACGTcount: A:0.57, C:0.22, G:0.05, T:0.16
Consensus pattern (23 bp):
AACAAATCAAGAACAATTTCCAA
Found at i:15704723 original size:107 final size:107
Alignment explanation
Indices: 15704506--15704794 Score: 463
Period size: 107 Copynumber: 2.7 Consensus size: 107
15704496 ACAAATCAAG
* * *
15704506 TTCCAGTTTCATATTCTACTGACTAACAAATCAAGAACAATTTCCAGCA-ACAATCAAAACAATT
1 TTCCAGTTTCATCTTCTACTAACTAACAAATCAAGAACAATTTCCAGCAGACTATCAAAACAATT
* *
15704570 TCCAGAACAAATCAAGAACAATATCAAAACAAATGCAACAAT
66 TCCAGAACAAATCAAGAACAATATCAAAACAAATACAACAAC
*
15704612 TTCCAGTTTCATCTTCTACTAACTAACAAATCAAGAACAATTTCCAGCAGACTATCAAAACAACT
1 TTCCAGTTTCATCTTCTACTAACTAACAAATCAAGAACAATTTCCAGCAGACTATCAAAACAATT
* * *
15704677 GCCAGAACAATTCAAGAACAATATCAAAACAACTACAACAAC
66 TCCAGAACAAATCAAGAACAATATCAAAACAAATACAACAAC
* * *
15704719 TTCCAGTTTCATCTTCTACTCACTAACAAATCAATAACATTTTCCAGCAGACTATCAAAACAATT
1 TTCCAGTTTCATCTTCTACTAACTAACAAATCAAGAACAATTTCCAGCAGACTATCAAAACAATT
15704784 TCCAGAACAAA
66 TCCAGAACAAA
15704795 CCAACAAAAT
Statistics
Matches: 167, Mismatches: 15, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
106 47 0.28
107 120 0.72
ACGTcount: A:0.45, C:0.25, G:0.06, T:0.24
Consensus pattern (107 bp):
TTCCAGTTTCATCTTCTACTAACTAACAAATCAAGAACAATTTCCAGCAGACTATCAAAACAATT
TCCAGAACAAATCAAGAACAATATCAAAACAAATACAACAAC
Found at i:15705450 original size:5 final size:5
Alignment explanation
Indices: 15705440--15705466 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
15705430 TGAGATAAAC
15705440 ATCTA ATCTA ATCTA ATCTA ATCTA AT
1 ATCTA ATCTA ATCTA ATCTA ATCTA AT
15705467 GATTGTAGCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (5 bp):
ATCTA
Found at i:15719525 original size:24 final size:24
Alignment explanation
Indices: 15719496--15719546 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
15719486 CATCACCCAC
15719496 TATTTTAGCTAAATTAACATCTGT
1 TATTTTAGCTAAATTAACATCTGT
15719520 TATTTTAGCTAAATTAACATCTGT
1 TATTTTAGCTAAATTAACATCTGT
15719544 TAT
1 TAT
15719547 ACATCCTTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.47
Consensus pattern (24 bp):
TATTTTAGCTAAATTAACATCTGT
Found at i:15721526 original size:12 final size:12
Alignment explanation
Indices: 15721509--15721547 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
15721499 CACACGCCCA
15721509 TGTGCCAGGCCG
1 TGTGCCAGGCCG
15721521 TGTGCCAGGCCG
1 TGTGCCAGGCCG
*
15721533 TGTGCTAGGCCG
1 TGTGCCAGGCCG
15721545 TGT
1 TGT
15721548 AATAGCCTAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.08, C:0.28, G:0.41, T:0.23
Consensus pattern (12 bp):
TGTGCCAGGCCG
Found at i:15722718 original size:30 final size:30
Alignment explanation
Indices: 15722684--15722906 Score: 113
Period size: 30 Copynumber: 7.5 Consensus size: 30
15722674 AGCCAAAGCT
* *
15722684 ATCCCTTTTCATAATTTGATGGTTGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCAAC
** * *
15722714 ATCCCTTTTCATTGTTCGATGGTCGTTAAC
1 ATCCCTTTTCATAATTTGATGGTCGTCAAC
* * *
15722744 ATCCCTTTTCATAATTTGATAGCCG-AAAC
1 ATCCCTTTTCATAATTTGATGGTCGTCAAC
* * * *
15722773 TATCCCTTTTCATAGA-TCGCTAG-C-TGAAGCC
1 -ATCCCTTTTCATA-ATTTGATGGTCGTCAA--C
* * * *
15722804 ATCTCTTTTCATAGTTCGATAGTCG--AAGCC
1 ATCCCTTTTCATAATTTGATGGTCGTCAA--C
* * ** *
15722834 ATCCTTTTTCATAGTTCAATGGTCGTCACC
1 ATCCCTTTTCATAATTTGATGGTCGTCAAC
*
15722864 AT-CCTTTTCAT-TTTTGATGGTCGTC-AC
1 ATCCCTTTTCATAATTTGATGGTCGTCAAC
15722891 AATCCCTTTTCATAAT
1 -ATCCCTTTTCATAAT
15722907 CGATAGCCGA
Statistics
Matches: 151, Mismatches: 29, Indels: 26
0.73 0.14 0.13
Matches are distributed among these distances:
27 1 0.01
28 13 0.09
29 23 0.15
30 110 0.73
31 3 0.02
32 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.13, T:0.40
Consensus pattern (30 bp):
ATCCCTTTTCATAATTTGATGGTCGTCAAC
Found at i:15722924 original size:29 final size:29
Alignment explanation
Indices: 15722892--15722961 Score: 113
Period size: 29 Copynumber: 2.4 Consensus size: 29
15722882 GGTCGTCACA
*
15722892 ATCCCTTTTCATAATCGATAGCCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCAAAGCT
* *
15722921 ATCCCTTTCCATATTCGATAGCCAAAGCT
1 ATCCCTTTTCATAATCGATAGCCAAAGCT
15722950 ATCCCTTTTCAT
1 ATCCCTTTTCAT
15722962 TCGTCGATGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.26, C:0.30, G:0.10, T:0.34
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCAAAGCT
Found at i:15723244 original size:17 final size:17
Alignment explanation
Indices: 15723222--15723254 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
15723212 AATTTAGCCC
15723222 AAAAATTCAT-ATTTTGG
1 AAAAATT-ATGATTTTGG
15723239 AAAAATTATGATTTTG
1 AAAAATTATGATTTTG
15723255 CCCCTATACT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.42, C:0.03, G:0.12, T:0.42
Consensus pattern (17 bp):
AAAAATTATGATTTTGG
Found at i:15725658 original size:13 final size:13
Alignment explanation
Indices: 15725642--15725672 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
15725632 TCTAAATATT
15725642 ATTAATGATAGAA
1 ATTAATGATAGAA
15725655 ATTAATGATAGAA
1 ATTAATGATAGAA
15725668 ATTAA
1 ATTAA
15725673 ACAACTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.13, T:0.32
Consensus pattern (13 bp):
ATTAATGATAGAA
Found at i:15749965 original size:29 final size:30
Alignment explanation
Indices: 15749922--15749999 Score: 86
Period size: 31 Copynumber: 2.6 Consensus size: 30
15749912 AAGTTATAGA
* *
15749922 TTTAGTCTCTATACTTTT-ATTTGATCAAT
1 TTTAGTCCCTATACTTTTAAATTGATCAAT
* * *
15749951 TTTAGTCCCTGTACTTTTCAAATTGGTCACT
1 TTTAGTCCCTATACTTTT-AAATTGATCAAT
*
15749982 TTTAGTCCCTATATTTTT
1 TTTAGTCCCTATACTTTT
15750000 CAAAATTTGA
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
29 16 0.40
31 24 0.60
ACGTcount: A:0.21, C:0.18, G:0.09, T:0.53
Consensus pattern (30 bp):
TTTAGTCCCTATACTTTTAAATTGATCAAT
Found at i:15750016 original size:31 final size:31
Alignment explanation
Indices: 15749922--15750018 Score: 83
Period size: 31 Copynumber: 3.2 Consensus size: 31
15749912 AAGTTATAGA
* * * *
15749922 TTTAGTCTCTATACTTTT--ATTTGATCAAT
1 TTTAGTCCCTATACTTTTCAAATTGGTAAAT
* * *
15749951 TTTAGTCCCTGTACTTTTCAAATTGGTCACT
1 TTTAGTCCCTATACTTTTCAAATTGGTAAAT
* *
15749982 TTTAGTCCCTATATTTTTCAAAATTTG-AAAT
1 TTTAGTCCCTATACTTTTC-AAATTGGTAAAT
15750013 TTTAGT
1 TTTAGT
15750019 ACTAACCTAA
Statistics
Matches: 55, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
29 16 0.29
31 33 0.60
32 6 0.11
ACGTcount: A:0.25, C:0.15, G:0.09, T:0.51
Consensus pattern (31 bp):
TTTAGTCCCTATACTTTTCAAATTGGTAAAT
Found at i:15761729 original size:43 final size:43
Alignment explanation
Indices: 15761663--15761858 Score: 198
Period size: 43 Copynumber: 4.6 Consensus size: 43
15761653 ACAGGTTATA
* * * *
15761663 CTTCAGTTTATTCGATGATGCACTATAGGTGCCAGTATAATTG
1 CTTCGGTTTATTCGATGATGCACTACAGGTGCCAGTATATTTC
* * *
15761706 CTTCGGTTTATTTGATGATGCACTACATGTGCTAGTATATTTC
1 CTTCGGTTTATTCGATGATGCACTACAGGTGCCAGTATATTTC
* ** * *
15761749 CTTTGAATTA-TCTGATGATGCACTA-TGTGTGCTAGTATATTTC
1 CTTCGGTTTATTC-GATGATGCACTACAG-GTGCCAGTATATTTC
* * * *
15761792 CTTTGATTTATTCGATGATGCACTACATGTTCCAGTATATTTC
1 CTTCGGTTTATTCGATGATGCACTACAGGTGCCAGTATATTTC
* *
15761835 CTTCGGTTTATCCAATGATGCACT
1 CTTCGGTTTATTCGATGATGCACT
15761859 GAGGTGATAG
Statistics
Matches: 127, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
42 1 0.01
43 124 0.98
44 2 0.02
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (43 bp):
CTTCGGTTTATTCGATGATGCACTACAGGTGCCAGTATATTTC
Found at i:15761821 original size:86 final size:86
Alignment explanation
Indices: 15761676--15761837 Score: 236
Period size: 86 Copynumber: 1.9 Consensus size: 86
15761666 CAGTTTATTC
* * * *
15761676 GATGATGCACTATAGGTGCCAGTATAATTGCTTCGGTTTATTTGATGATGCACTACATGTGCTAG
1 GATGATGCACTATAGGTGCCAGTATAATTCCTTCGATTTATTCGATGATGCACTACATGTGCCAG
15761741 TATATTTCCTTTGAATTATCT
66 TATATTTCCTTTGAATTATCT
* * * *
15761762 GATGATGCACTAT-GTGTGCTAGTATATTTCCTTTGATTTATTCGATGATGCACTACATGTTCCA
1 GATGATGCACTATAG-GTGCCAGTATAATTCCTTCGATTTATTCGATGATGCACTACATGTGCCA
15761826 GTATATTTCCTT
65 GTATATTTCCTT
15761838 CGGTTTATCC
Statistics
Matches: 67, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
85 1 0.01
86 66 0.99
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (86 bp):
GATGATGCACTATAGGTGCCAGTATAATTCCTTCGATTTATTCGATGATGCACTACATGTGCCAG
TATATTTCCTTTGAATTATCT
Found at i:15761846 original size:86 final size:86
Alignment explanation
Indices: 15761663--15761858 Score: 234
Period size: 86 Copynumber: 2.3 Consensus size: 86
15761653 ACAGGTTATA
* * * *
15761663 CTTCAGTTTAT-TCGATGATGCACTATAGGTGCCAGTATAATTGCTTCGGTTTATTTGATGATGC
1 CTTCGGTTTATCT-GATGATGCACTATAGGTGCCAGTATAATTCCTTCGATTTATTCGATGATGC
*
15761727 ACTACATGTGCTAGTATATTTC
65 ACTACATGTGCCAGTATATTTC
* ** * * *
15761749 CTTTGAATTATCTGATGATGCACTAT-GTGTGCTAGTATATTTCCTTTGATTTATTCGATGATGC
1 CTTCGGTTTATCTGATGATGCACTATAG-GTGCCAGTATAATTCCTTCGATTTATTCGATGATGC
*
15761813 ACTACATGTTCCAGTATATTTC
65 ACTACATGTGCCAGTATATTTC
**
15761835 CTTCGGTTTATCCAATGATGCACT
1 CTTCGGTTTATCTGATGATGCACT
15761859 GAGGTGATAG
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
85 1 0.01
86 89 0.98
87 1 0.01
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.42
Consensus pattern (86 bp):
CTTCGGTTTATCTGATGATGCACTATAGGTGCCAGTATAATTCCTTCGATTTATTCGATGATGCA
CTACATGTGCCAGTATATTTC
Found at i:15768279 original size:72 final size:71
Alignment explanation
Indices: 15768188--15768524 Score: 462
Period size: 72 Copynumber: 4.7 Consensus size: 71
15768178 CAATGCTAAA
15768188 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
15768253 GTGTAAT
66 GT-TAAT
* *
15768260 CTAGTTTTATCAATGGTTGTTTATATTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
15768325 GTGTAAT
66 GT-TAAT
* * * *
15768332 CTAGTTTTATCAATGGTTGTCTATGTTTGGTTTTTGGATGTTGAATTTATGGTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
*
15768397 GCTTAAGG
66 G-TTAA-T
* * *
15768405 CTAGTTTTATCAATAATTGTTTATGTTTAGTTTTTGGATATTGAATTTATATTCTACTTATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
* *
15768470 ACTAAAT
66 -GTTAAT
* * * **
15768477 -TAGTTTTATCAATAGTTTTTTATATTT-GATTTTGGATATACAATTTAT
1 CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTAT
15768525 TCATAGGTGA
Statistics
Matches: 239, Mismatches: 23, Indels: 8
0.89 0.09 0.03
Matches are distributed among these distances:
70 18 0.08
71 24 0.10
72 135 0.56
73 62 0.26
ACGTcount: A:0.24, C:0.06, G:0.15, T:0.54
Consensus pattern (71 bp):
CTAGTTTTATCAATAGTTGTTTATGTTTGGTTTTTGGATATTGAATTTATGTTCTACTTATTTAT
GTTAAT
Found at i:15770239 original size:21 final size:21
Alignment explanation
Indices: 15770215--15770265 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
15770205 TACAACTGTG
15770215 TTAATATATA-ATTACAAATAT
1 TTAATATATATATT-CAAATAT
*
15770236 TTAATGAT-TATATTTAAATAT
1 TTAAT-ATATATATTCAAATAT
15770257 TTAA-ATATA
1 TTAATATATA
15770266 GTTTATATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
19 2 0.08
20 2 0.08
21 17 0.65
22 5 0.19
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (21 bp):
TTAATATATATATTCAAATAT
Found at i:15770545 original size:27 final size:27
Alignment explanation
Indices: 15770515--15770571 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
15770505 AACACTTAAA
15770515 TTTTAAACAAAACTTCTCAAAAGCACT
1 TTTTAAACAAAACTTCTCAAAAGCACT
** ** *
15770542 TTTTCCACAGCATTTCTCAAAAGCACT
1 TTTTAAACAAAACTTCTCAAAAGCACT
15770569 TTT
1 TTT
15770572 CAAAAGCAAT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.25, G:0.05, T:0.35
Consensus pattern (27 bp):
TTTTAAACAAAACTTCTCAAAAGCACT
Found at i:15770574 original size:13 final size:13
Alignment explanation
Indices: 15770526--15770579 Score: 56
Period size: 13 Copynumber: 4.1 Consensus size: 13
15770516 TTTAAACAAA
*
15770526 ACTTCTCAAAAGC
1 ACTTTTCAAAAGC
* *
15770539 ACTTTTTCCACAGC
1 AC-TTTTCAAAAGC
15770553 A-TTTCTCAAAAGC
1 ACTTT-TCAAAAGC
15770566 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
15770579 A
1 A
15770580 ATACTAAACT
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
12 3 0.09
13 18 0.55
14 12 0.36
ACGTcount: A:0.35, C:0.28, G:0.07, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:15779634 original size:42 final size:42
Alignment explanation
Indices: 15779562--15779652 Score: 94
Period size: 42 Copynumber: 2.2 Consensus size: 42
15779552 GTTTCATGGA
* * * * *
15779562 CCGTGTAACTCATTGACTTGGCTCACACGGTCATGTCGCAGG
1 CCGTGTCACTCACTGACTTGGCACAAACGGTCATGTCGCAGC
** *
15779604 CCGTGTCACTCACTGACTTGAG-ACAAACGGTTGTGTCTCAGC
1 CCGTGTCACTCACTGACTTG-GCACAAACGGTCATGTCGCAGC
15779646 CCGTGTC
1 CCGTGTC
15779653 TTGGACTGTG
Statistics
Matches: 40, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
42 39 0.98
43 1 0.03
ACGTcount: A:0.19, C:0.30, G:0.25, T:0.26
Consensus pattern (42 bp):
CCGTGTCACTCACTGACTTGGCACAAACGGTCATGTCGCAGC
Found at i:15781864 original size:26 final size:27
Alignment explanation
Indices: 15781829--15781894 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 27
15781819 AGTCCATTTT
15781829 TTTAGTTATTTTATTATT-TAGTTATTA
1 TTTA-TTATTTTATTATTGTAGTTATTA
* *
15781856 TTTATTATTTT-TTGTTGTTGTTATTA
1 TTTATTATTTTATTATTGTAGTTATTA
15781882 -TTATTATATTTAT
1 TTTATTAT-TTTAT
15781895 ACACGCATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 11 0.32
26 18 0.53
27 5 0.15
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.70
Consensus pattern (27 bp):
TTTATTATTTTATTATTGTAGTTATTA
Found at i:15781880 original size:37 final size:34
Alignment explanation
Indices: 15781826--15781894 Score: 86
Period size: 37 Copynumber: 1.9 Consensus size: 34
15781816 TCTAGTCCAT
15781826 TTTTTTAGTTATTTTATTATTTAGTTATTATTTATTA
1 TTTTTTAGTTATTTTATTA-TTA-TTA-TATTTATTA
*
15781863 TTTTTT-GTTGTTGTTATTATTATTATATTTAT
1 TTTTTTAGTTATT-TTATTATTATTATATTTAT
15781895 ACACGCATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
34 7 0.23
35 3 0.10
36 8 0.27
37 12 0.40
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (34 bp):
TTTTTTAGTTATTTTATTATTATTATATTTATTA
Found at i:15782056 original size:18 final size:19
Alignment explanation
Indices: 15782022--15782059 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
15782012 TATACTTTAT
*
15782022 ATTTTATATATACATATAC
1 ATTTTATATACACATATAC
15782041 ATTTTATA-ACACATATAC
1 ATTTTATATACACATATAC
15782059 A
1 A
15782060 CTTTCCACAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.56
19 8 0.44
ACGTcount: A:0.45, C:0.13, G:0.00, T:0.42
Consensus pattern (19 bp):
ATTTTATATACACATATAC
Found at i:15782327 original size:15 final size:15
Alignment explanation
Indices: 15782307--15782341 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
15782297 TTTCTATGCC
*
15782307 ATTGTTATATTTATT
1 ATTGTTATATTTACT
15782322 ATTGTTATATTTACT
1 ATTGTTATATTTACT
15782337 ATTGT
1 ATTGT
15782342 GGCATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.26, C:0.03, G:0.09, T:0.63
Consensus pattern (15 bp):
ATTGTTATATTTACT
Found at i:15785690 original size:13 final size:14
Alignment explanation
Indices: 15785664--15785696 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
15785654 TTAATGTTTC
15785664 TTTTATCTTATTAT
1 TTTTATCTTATTAT
15785678 TTTTATCTT-TTAT
1 TTTTATCTTATTAT
*
15785691 ATTTAT
1 TTTTAT
15785697 TTTACGAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTATCTTATTAT
Found at i:15788699 original size:19 final size:19
Alignment explanation
Indices: 15788675--15788751 Score: 100
Period size: 19 Copynumber: 3.8 Consensus size: 19
15788665 AATCTTCGAG
15788675 GATATGTAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
15788694 GATATGCAATCTTAGATAT
1 GATATGTAATCTTAGATAT
15788713 GATATGTAATCTTAGAAGATAT
1 GATATGTAATCTT---AGATAT
*
15788735 GATTTTGTAATCTTAGA
1 GA-TATGTAATCTTAGA
15788752 GATTTAATTT
Statistics
Matches: 51, Mismatches: 3, Indels: 7
0.84 0.05 0.11
Matches are distributed among these distances:
19 30 0.59
20 3 0.06
22 8 0.16
23 10 0.20
ACGTcount: A:0.36, C:0.06, G:0.17, T:0.40
Consensus pattern (19 bp):
GATATGTAATCTTAGATAT
Found at i:15788761 original size:22 final size:23
Alignment explanation
Indices: 15788717--15788761 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
15788707 AGATATGATA
*
15788717 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
15788740 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
15788762 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:15794282 original size:44 final size:44
Alignment explanation
Indices: 15794227--15794444 Score: 235
Period size: 44 Copynumber: 5.0 Consensus size: 44
15794217 AGTGAAAAAG
* *
15794227 CAGATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAGATAA
1 CAGATCTTGTCTTCCTATATTGGCGCGAAGTAGATCGAAGATAA
* ** * *
15794271 CAGATCCTGTCTTCCTATATTGGTACGAAGTGGATCGAAGAT-G
1 CAGATCTTGTCTTCCTATATTGGCGCGAAGTAGATCGAAGATAA
* *
15794314 CAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGA-AA
1 CAGATCTTGTCTTCCTATATTGG-CGCGAAGTAGATCGAAGATAA
* * * * *
15794358 GCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGGTAG
1 -CAGATCTTGTCTTCCTATATTGGCGCGAAGTAGATCGAAGATAA
* * *
15794403 CAGATCCTGTCTTCCTATATTGGTAG-GAAGTGGATCGAAGAT
1 CAGATCTTGTCTTCCTATATTGG-CGCGAAGTAGATCGAAGAT
15794445 GTAGATCTTA
Statistics
Matches: 143, Mismatches: 26, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
43 21 0.15
44 100 0.70
45 22 0.15
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (44 bp):
CAGATCTTGTCTTCCTATATTGGCGCGAAGTAGATCGAAGATAA
Found at i:15794380 original size:88 final size:88
Alignment explanation
Indices: 15794225--15794444 Score: 266
Period size: 88 Copynumber: 2.5 Consensus size: 88
15794215 TCAGTGAAAA
* * *
15794225 AGCAGATCTTGTCTTCATATATTGG-CGTGAAGTAGATCGAAGATAACAGATCCTGTCTTCCTAT
1 AGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGATAACAGATCCTGTCTTCATAT
* *
15794289 ATTGGTACGAAGTGGATCGAAGAT
65 ATTGGCACGAAGTAGATCGAAGAT
* * * *
15794313 -GCAGATCTTGTCTTCCCATATTGGTGGCGAAGTAGATCGAAGA-AAGCAGATCTTGTCTTCATG
1 AGCAGATCTTGTCTTCCTATATTGGTAG-GAAGTAGATCGAAGATAA-CAGATCCTGTCTTCATA
** *
15794376 TATTGGCGTGAAGTAGATCGAAGGT
64 TATTGGCACGAAGTAGATCGAAGAT
* *
15794401 AGCAGATCCTGTCTTCCTATATTGGTAGGAAGTGGATCGAAGAT
1 AGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGAT
15794445 GTAGATCTTA
Statistics
Matches: 112, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
87 24 0.21
88 64 0.57
89 24 0.21
ACGTcount: A:0.28, C:0.16, G:0.26, T:0.30
Consensus pattern (88 bp):
AGCAGATCTTGTCTTCCTATATTGGTAGGAAGTAGATCGAAGATAACAGATCCTGTCTTCATATA
TTGGCACGAAGTAGATCGAAGAT
Found at i:15795473 original size:132 final size:132
Alignment explanation
Indices: 15794439--15795458 Score: 1724
Period size: 132 Copynumber: 7.8 Consensus size: 132
15794429 GAAGTGGATC
*
15794439 GAAGA-TGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCAAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTT
*
15794503 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCAGAGTAGG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGG
*
15794568 TC
131 TT
*
15794570 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGACAAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTT
* * * * *
15794635 TCCAAGATAGTGGGAAGCATATTTAAACCACAAAGCCTTGTCT--CTGAGCAGCAGTGGAGAAGG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGG
15794698 TT
131 TT
*
15794700 GAAGATTGTAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTT
* *
15794765 TCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTT-TCCTCCCTGAGCAGCAGCGGAGAAG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGT-CTCCCTGAGCAGCAGCGGAGTAG
15794829 GTT
130 GTT
* * *
15794832 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCATATCGAAGATGGCAAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTT
* *
15794897 TCCAAGATAGTGGGAAACAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGG
15794962 TT
131 TT
* * *
15794964 GAAGATTGTAGATATTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTAAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTT
*
15795029 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGTGGAGTAGG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGG
15795094 TT
131 TT
*
15795096 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTAAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTT
*
15795161 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTAAGCAGCAGCGGAGTAGG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGG
15795226 TT
131 TT
* *
15795228 GAAGATTGTAGATCTTATCTCCCTAAGTAGTAGTGGAGCAGATCAAAGACGGAAAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTT
* *
15795293 TCCAAGATAGTGGGAAGCAGATTTAAGCCACAAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGG
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGG
15795358 TT
131 TT
* * **
15795360 GAAGATTATAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAAACGAAAAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTT
15795425 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAA
66 TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAA
15795459 ATCCTATCTC
Statistics
Matches: 841, Mismatches: 43, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
129 1 0.00
130 120 0.14
131 5 0.01
132 714 0.85
133 1 0.00
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.25
Consensus pattern (132 bp):
GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGCAAATCTTATCTT
TCCAAGATAGTGGGAAGCAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGG
TT
Found at i:15795980 original size:17 final size:18
Alignment explanation
Indices: 15795966--15796028 Score: 74
Period size: 19 Copynumber: 3.4 Consensus size: 18
15795956 ATAATCTTCG
15795966 AGGATATGCAATCTTAGA
1 AGGATATGCAATCTTAGA
*
15795984 TATGATATGCAATCTTAGA
1 -AGGATATGCAATCTTAGA
* *
15796003 TATGATATGTAATCTTAGA
1 -AGGATATGCAATCTTAGA
15796022 A-GATATG
1 AGGATATG
15796029 ATTTTGTAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
17 6 0.14
18 1 0.02
19 35 0.83
ACGTcount: A:0.38, C:0.08, G:0.19, T:0.35
Consensus pattern (18 bp):
AGGATATGCAATCTTAGA
Found at i:15795992 original size:19 final size:19
Alignment explanation
Indices: 15795968--15796021 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
15795958 AATCTTCGAG
15795968 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
15795987 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
15796006 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
15796022 AGATATGATT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 34 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:15796047 original size:22 final size:22
Alignment explanation
Indices: 15795981--15796044 Score: 80
Period size: 19 Copynumber: 3.0 Consensus size: 22
15795971 ATGCAATCTT
*
15795981 AGATATGATATGCAATCTT---
1 AGATATGATATGTAATCTTAGA
15796000 AGATATGATATGTAATCTTAGA
1 AGATATGATATGTAATCTTAGA
*
15796022 AGATATGATTTTGTAATCTTAGA
1 AGATATGA-TATGTAATCTTAGA
15796045 GATTTAATTT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.46
22 8 0.21
23 13 0.33
ACGTcount: A:0.38, C:0.06, G:0.17, T:0.39
Consensus pattern (22 bp):
AGATATGATATGTAATCTTAGA
Found at i:15796054 original size:22 final size:23
Alignment explanation
Indices: 15796010--15796054 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
15796000 AGATATGATA
*
15796010 TGTAATCTTAGAAGATATGATTT
1 TGTAATCTTAGAAGATATAATTT
*
15796033 TGTAATCTTAG-AGATTTAATTT
1 TGTAATCTTAGAAGATATAATTT
15796055 GTAGATACCC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.33, C:0.04, G:0.16, T:0.47
Consensus pattern (23 bp):
TGTAATCTTAGAAGATATAATTT
Found at i:15800034 original size:14 final size:14
Alignment explanation
Indices: 15800015--15800053 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
15800005 TTGTTTCACT
*
15800015 GAAAATGGCTTCCG
1 GAAAATGACTTCCG
* *
15800029 GAAAATGATTTCTG
1 GAAAATGACTTCCG
15800043 GAAAATGACTT
1 GAAAATGACTT
15800054 ACTTTTCTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (14 bp):
GAAAATGACTTCCG
Found at i:15800663 original size:18 final size:18
Alignment explanation
Indices: 15800625--15800660 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
15800615 TTATTATTTT
*
15800625 TAAAATTTACTATTAAAA
1 TAAAATTTAATATTAAAA
15800643 TAAAATTTAAATATTAAA
1 TAAAATTT-AATATTAAA
15800661 TAATTTATTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.58, C:0.03, G:0.00, T:0.39
Consensus pattern (18 bp):
TAAAATTTAATATTAAAA
Found at i:15800695 original size:30 final size:31
Alignment explanation
Indices: 15800635--15800700 Score: 93
Period size: 30 Copynumber: 2.2 Consensus size: 31
15800625 TAAAATTTAC
15800635 TATT-AAAATAAAATTTAAATATTAAATAATT
1 TATTAAAAATAAAATTT-AATATTAAATAATT
15800666 TATTAAAAATAATAATTT-ATATT-AATAATT
1 TATTAAAAATAA-AATTTAATATTAAATAATT
15800696 TATTA
1 TATTA
15800701 TATGACTAAA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
30 12 0.36
31 9 0.27
32 7 0.21
33 5 0.15
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (31 bp):
TATTAAAAATAAAATTTAATATTAAATAATT
Found at i:15800985 original size:19 final size:19
Alignment explanation
Indices: 15800938--15800985 Score: 53
Period size: 22 Copynumber: 2.4 Consensus size: 19
15800928 GAAAAAGGCT
15800938 TATTTTCCGTTGACCTGTAAG
1 TATTTTCCGTTGACC--TAAG
15800959 TCATTTTCCGTTGACC-AAG
1 T-ATTTTCCGTTGACCTAAG
15800978 CTATTTTC
1 -TATTTTC
15800986 TATGAAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
19 9 0.36
20 1 0.04
21 1 0.04
22 14 0.56
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.44
Consensus pattern (19 bp):
TATTTTCCGTTGACCTAAG
Found at i:15802050 original size:19 final size:20
Alignment explanation
Indices: 15802012--15802053 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
15802002 CTTTTATTCC
15802012 AAAATTTTATAAAAAATATA
1 AAAATTTTATAAAAAATATA
* *
15802032 AAAATTTTA-AAATAGTATA
1 AAAATTTTATAAAAAATATA
15802051 AAA
1 AAA
15802054 TTCATTAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 11 0.55
20 9 0.45
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.33
Consensus pattern (20 bp):
AAAATTTTATAAAAAATATA
Found at i:15804901 original size:51 final size:51
Alignment explanation
Indices: 15804771--15804919 Score: 169
Period size: 50 Copynumber: 2.9 Consensus size: 51
15804761 CCGTGTAATT
* * *
15804771 ATTATC-ATTCGATACACGTAGTAACCTTCACATAGTACTACACACGTGATC
1 ATTATCTA-TCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACC
* * * * *
15804822 A--AACTTTCCAGTTCACGTAGTAGCCTGCACATAGTACTACACATGTGACC
1 ATTATCTATCGA-TACACGTAGTAGCCTGCACATAGTACTACACACGTGACC
**
15804872 ATTATCTATCGATACACGTAGTAGCCTGCAGTTAGTACTACACACGTG
1 ATTATCTATCGATACACGTAGTAGCCTGCACATAGTACTACACACGTG
15804920 TTTATAGGCA
Statistics
Matches: 79, Mismatches: 15, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
49 5 0.06
50 35 0.44
51 33 0.42
52 6 0.08
ACGTcount: A:0.31, C:0.26, G:0.15, T:0.28
Consensus pattern (51 bp):
ATTATCTATCGATACACGTAGTAGCCTGCACATAGTACTACACACGTGACC
Found at i:15809978 original size:17 final size:18
Alignment explanation
Indices: 15809953--15809996 Score: 63
Period size: 18 Copynumber: 2.5 Consensus size: 18
15809943 GGTGAAAAGT
*
15809953 GTAATTGTGT-AAATGGG
1 GTAAATGTGTGAAATGGG
*
15809970 GTAAATGTGTGATATGGG
1 GTAAATGTGTGAAATGGG
15809988 GTAAATGTG
1 GTAAATGTG
15809997 AGATATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 9 0.38
18 15 0.62
ACGTcount: A:0.30, C:0.00, G:0.36, T:0.34
Consensus pattern (18 bp):
GTAAATGTGTGAAATGGG
Found at i:15809988 original size:18 final size:18
Alignment explanation
Indices: 15809965--15810002 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
15809955 AATTGTGTAA
*
15809965 ATGGGGTAAATGTGTGAT
1 ATGGGGTAAATGTGAGAT
15809983 ATGGGGTAAATGTGAGAT
1 ATGGGGTAAATGTGAGAT
15810001 AT
1 AT
15810003 ATATATGACT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.00, G:0.37, T:0.32
Consensus pattern (18 bp):
ATGGGGTAAATGTGAGAT
Found at i:15810414 original size:20 final size:20
Alignment explanation
Indices: 15810389--15810426 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
15810379 GTCCAAGTTC
15810389 CATTTTATCTTATTTTATTT
1 CATTTTATCTTATTTTATTT
*
15810409 CATTTTATCTTGTTTTAT
1 CATTTTATCTTATTTTAT
15810427 CTTTGCTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.11, G:0.03, T:0.68
Consensus pattern (20 bp):
CATTTTATCTTATTTTATTT
Found at i:15810446 original size:10 final size:10
Alignment explanation
Indices: 15810390--15810429 Score: 55
Period size: 10 Copynumber: 4.0 Consensus size: 10
15810380 TCCAAGTTCC
15810390 ATTTTATCTT
1 ATTTTATCTT
15810400 ATTTTAT-TT
1 ATTTTATCTT
15810409 CATTTTATCTT
1 -ATTTTATCTT
*
15810420 GTTTTATCTT
1 ATTTTATCTT
15810430 TGCTTATCTT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
9 2 0.07
10 23 0.85
11 2 0.07
ACGTcount: A:0.17, C:0.10, G:0.03, T:0.70
Consensus pattern (10 bp):
ATTTTATCTT
Found at i:15814184 original size:37 final size:37
Alignment explanation
Indices: 15814134--15814241 Score: 180
Period size: 37 Copynumber: 2.9 Consensus size: 37
15814124 ACCTTTAGCT
* * *
15814134 CGGACGAAATCTCCACACGAAGTTATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
15814171 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
*
15814208 CGGACAAAATCTCCACACGTAGTCATCAGGTCTT
1 CGGACAAAATCTCCACACGTAGTCATCGGGTCTT
15814242 TAGAGCCCGG
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.22
Consensus pattern (37 bp):
CGGACAAAATCTCCACACGTAGTCATCGGGTCTTACC
Found at i:15814431 original size:47 final size:47
Alignment explanation
Indices: 15814360--15815383 Score: 1622
Period size: 47 Copynumber: 21.6 Consensus size: 47
15814350 CCCTTCGGGA
* * * * * *
15814360 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15814407 CCTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15814454 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15814501 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15814548 CTTATCACATATA-ACACTTTTACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15814594 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15814641 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15814688 CTTATCACATGTATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
15814735 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15814782 CTTATCACATATATATACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15814829 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15814876 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15814923 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15814970 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15815019 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15815066 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15815115 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
15815162 CTTATCACATATATATACACTTT--CATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15815209 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
15815256 CTTATCACATATATATACGCTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15815305 CTTATCACATGTATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
15815352 CTTATCACATATATATACGCTTTCACATTCAT
1 CTTATCAC--ATATATACACTTTCACATTCAT
15815384 TCAAATATAC
Statistics
Matches: 905, Mismatches: 59, Indels: 24
0.92 0.06 0.02
Matches are distributed among these distances:
45 12 0.01
46 45 0.05
47 685 0.76
49 163 0.18
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:15814557 original size:22 final size:22
Alignment explanation
Indices: 15814529--15814603 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
15814519 TTTCACATTC
15814529 ATCACATCGGCCATTAGGCCTT
1 ATCACATCGGCCATTAGGCCTT
**** *** *
15814551 ATCACATATAACACTTTTACATT
1 ATCACATCGGCCA-TTAGGCCTT
15814574 CATCACATCGGCCATTAGGCCTT
1 -ATCACATCGGCCATTAGGCCTT
15814597 ATCACAT
1 ATCACAT
15814604 ATATACACTT
Statistics
Matches: 35, Mismatches: 16, Indels: 4
0.64 0.29 0.07
Matches are distributed among these distances:
22 16 0.46
23 10 0.29
24 9 0.26
ACGTcount: A:0.29, C:0.29, G:0.11, T:0.31
Consensus pattern (22 bp):
ATCACATCGGCCATTAGGCCTT
Found at i:15821767 original size:109 final size:110
Alignment explanation
Indices: 15821565--15821775 Score: 300
Period size: 109 Copynumber: 1.9 Consensus size: 110
15821555 GAGGGACGGA
* ** * *
15821565 AAACCCTAGTATTACTAACTAGGGTTGTGGGCCCCTATACTTCTAGTTAGACTAGGAGTTCATTT
1 AAACCCTAATATTACTAACTAGGGTTGCCGCCCCCTATACTTATAGTTAGACTAGGAGTTCATTT
*
15821630 TCTTAGTTGAAATAAACTTCTACAATTCAATAAGGGTGGGACAAC
66 TCTTAGTTGAAATAAACTTCTACAATTCAACAAGGGTGGGACAAC
* **
15821675 AAACCCTAATATTATTAACTAGGGTTGCCGCCCCCTATAC-TATAGTTAGACTAGGAGTTTGTTT
1 AAACCCTAATATTACTAACTAGGGTTGCCGCCCCCTATACTTATAGTTAGACTAGGAGTTCATTT
* *
15821739 T-TCTAGTTGAAATAAATTTCTATAATTCAACAAGGGT
66 TCT-TAGTTGAAATAAACTTCTACAATTCAACAAGGGT
15821776 TCTACTTCTT
Statistics
Matches: 89, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
108 1 0.01
109 53 0.60
110 35 0.39
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (110 bp):
AAACCCTAATATTACTAACTAGGGTTGCCGCCCCCTATACTTATAGTTAGACTAGGAGTTCATTT
TCTTAGTTGAAATAAACTTCTACAATTCAACAAGGGTGGGACAAC
Found at i:15827000 original size:22 final size:21
Alignment explanation
Indices: 15826970--15827012 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
15826960 GGAAAATATT
15826970 TTTATTTTTTAATATTAATATAA
1 TTTATTTTTT-A-ATTAATATAA
15826993 TTTA-TTTTTAATTAATATAA
1 TTTATTTTTTAATTAATATAA
15827013 ATATAAATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 10 0.50
21 1 0.05
22 5 0.25
23 4 0.20
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTATTTTTTAATTAATATAA
Found at i:15828997 original size:17 final size:19
Alignment explanation
Indices: 15828954--15828996 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 19
15828944 GATAATGTTG
*
15828954 AAAAAATTATTTAGTTTAA
1 AAAAAATTATATAGTTTAA
15828973 AAATAAATT-TATAGTTTTAA
1 AAA-AAATTATATAG-TTTAA
15828993 AAAA
1 AAAA
15828997 TAGGATAAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.56, C:0.00, G:0.05, T:0.40
Consensus pattern (19 bp):
AAAAAATTATATAGTTTAA
Found at i:15830042 original size:6 final size:7
Alignment explanation
Indices: 15830023--15830053 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
15830013 GTTCGTTGAT
15830023 AGAAAAA
1 AGAAAAA
15830030 AGAAAAA
1 AGAAAAA
15830037 AGAAAAA
1 AGAAAAA
15830044 AGAAAAA
1 AGAAAAA
15830051 AGA
1 AGA
15830054 GAGAGAAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (7 bp):
AGAAAAA
Found at i:15837591 original size:31 final size:31
Alignment explanation
Indices: 15837553--15837615 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
15837543 GTAAAGTTTG
15837553 ACAGTTAAAGGAATCGTATTAACACATATAT
1 ACAGTTAAAGGAATCGTATTAACACATATAT
15837584 ACAGTTAAAGGAATCGTATTAACACATATAT
1 ACAGTTAAAGGAATCGTATTAACACATATAT
15837615 A
1 A
15837616 AAATACTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.46, C:0.13, G:0.13, T:0.29
Consensus pattern (31 bp):
ACAGTTAAAGGAATCGTATTAACACATATAT
Found at i:15844816 original size:15 final size:15
Alignment explanation
Indices: 15844796--15844834 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
15844786 TTGCCACATC
* *
15844796 ATAAAAAATTCAACA
1 ATAAAAAATTAAAAA
*
15844811 ATAAAAAAATAAAAA
1 ATAAAAAATTAAAAA
15844826 ATAAAAAAT
1 ATAAAAAAT
15844835 AATTTCTAGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.77, C:0.05, G:0.00, T:0.18
Consensus pattern (15 bp):
ATAAAAAATTAAAAA
Found at i:15846788 original size:18 final size:18
Alignment explanation
Indices: 15846765--15846803 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
15846755 TAACATCGTG
* *
15846765 AGTCGTACATTTTGATAC
1 AGTCGTACATCTTGACAC
*
15846783 AGTCGTATATCTTGACAC
1 AGTCGTACATCTTGACAC
15846801 AGT
1 AGT
15846804 TTATACAGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.36
Consensus pattern (18 bp):
AGTCGTACATCTTGACAC
Found at i:15851113 original size:27 final size:26
Alignment explanation
Indices: 15851083--15851334 Score: 243
Period size: 27 Copynumber: 9.3 Consensus size: 26
15851073 TCATCTCCTA
* *
15851083 GGGGTATAATAGTCATTTTATCCTATG
1 GGGGTAT-TTAGTCATTTTACCCTATG
* *
15851110 GGGGTATTTCGATCATTTTACCCTATA
1 GGGGTATTTAG-TCATTTTACCCTATG
* * * *
15851137 TGGGTATTTCATTCATTTTACCTTATA
1 GGGGTATTT-AGTCATTTTACCCTATG
*
15851164 GGGGTATTTCAGTCATTTTACCCTATT
1 GGGGTATTT-AGTCATTTTACCCTATG
* *
15851191 GGGGTATTTCGGTCATTTTATCCTATG
1 GGGGTATTT-AGTCATTTTACCCTATG
* * *
15851218 GGGGTATTTTGGTCATTTTACCTTATT
1 GGGGTA-TTTAGTCATTTTACCCTATG
* *
15851245 GGGGTATTCCAGTCATTTTACCTTATG
1 GGGGTATT-TAGTCATTTTACCCTATG
*
15851272 GGGGTATTTCGATCATTTTACCCTATG
1 GGGGTATTTAG-TCATTTTACCCTATG
* * *
15851299 TGAGTATTTCGATCATTTTACCCTATG
1 GGGGTATTTAG-TCATTTTACCCTATG
15851326 GGGGTATTT
1 GGGGTATTT
15851335 TCGTAATAAA
Statistics
Matches: 192, Mismatches: 28, Indels: 10
0.83 0.12 0.04
Matches are distributed among these distances:
26 5 0.03
27 184 0.96
28 3 0.02
ACGTcount: A:0.19, C:0.15, G:0.21, T:0.44
Consensus pattern (26 bp):
GGGGTATTTAGTCATTTTACCCTATG
Found at i:15851142 original size:54 final size:52
Alignment explanation
Indices: 15851083--15851334 Score: 276
Period size: 54 Copynumber: 4.7 Consensus size: 52
15851073 TCATCTCCTA
*
15851083 GGGGTATAATAGTCATTTTATCCTATGGGGGTATTTCGATCATTTTACCCTATAT
1 GGGGTAT-TTAGTCATTTTA-CCTATGGGGGTATTTCGATCATTTTACCCTAT-T
* *
15851138 -GGGTATTTCATTCATTTTACCTTATAGGGGTATTTC-AGTCATTTTACCCTATT
1 GGGGTATTT-AGTCATTTTACC-TATGGGGGTATTTCGA-TCATTTTACCCTATT
* * * *
15851191 GGGGTATTTCGGTCATTTTATCCTATGGGGGTATTTTGGTCATTTTACCTTATT
1 GGGGTATTT-AGTCATTTTA-CCTATGGGGGTATTTCGATCATTTTACCCTATT
*
15851245 GGGGTATTCCAGTCATTTTACCTTATGGGGGTATTTCGATCATTTTACCCTA-T
1 GGGGTATT-TAGTCATTTTACC-TATGGGGGTATTTCGATCATTTTACCCTATT
* *
15851298 GTGAGTATTTCGATCATTTTACCCTATGGGGGTATTT
1 G-GGGTATTTAG-TCATTTTA-CCTATGGGGGTATTT
15851335 TCGTAATAAA
Statistics
Matches: 169, Mismatches: 17, Indels: 23
0.81 0.08 0.11
Matches are distributed among these distances:
53 10 0.06
54 155 0.92
55 4 0.02
ACGTcount: A:0.19, C:0.15, G:0.21, T:0.44
Consensus pattern (52 bp):
GGGGTATTTAGTCATTTTACCTATGGGGGTATTTCGATCATTTTACCCTATT
Found at i:15851333 original size:81 final size:80
Alignment explanation
Indices: 15851093--15851333 Score: 331
Period size: 81 Copynumber: 3.0 Consensus size: 80
15851083 GGGGTATAAT
*
15851093 AGTCATTTTATCCTATGGGGGTATTTCGATCATTTTACCCTATATGGGTATTTC-ATTCATTTTA
1 AGTCATTTTA-CCTATGGGGGTATTTCGATCATTTTACCCTATGTGGGTATTTCGA-TCATTTTA
*
15851157 CCTTATAGGGGTATTTC
64 CCTTATAGGGGTATTCC
* * * * * *
15851174 AGTCATTTTACCCTATTGGGGTATTTCGGTCATTTTATCCTATGGGGGTATTTTGGTCATTTTAC
1 AGTCATTTTA-CCTATGGGGGTATTTCGATCATTTTACCCTATGTGGGTATTTCGATCATTTTAC
*
15851239 CTTATTGGGGTATTCC
65 CTTATAGGGGTATTCC
*
15851255 AGTCATTTTACCTTATGGGGGTATTTCGATCATTTTACCCTATGTGAGTATTTCGATCATTTTAC
1 AGTCATTTTACC-TATGGGGGTATTTCGATCATTTTACCCTATGTGGGTATTTCGATCATTTTAC
* *
15851320 CCTATGGGGGTATT
65 CTTATAGGGGTATT
15851334 TTCGTAATAA
Statistics
Matches: 139, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
80 2 0.01
81 137 0.99
ACGTcount: A:0.19, C:0.16, G:0.20, T:0.45
Consensus pattern (80 bp):
AGTCATTTTACCTATGGGGGTATTTCGATCATTTTACCCTATGTGGGTATTTCGATCATTTTACC
TTATAGGGGTATTCC
Found at i:15853637 original size:21 final size:21
Alignment explanation
Indices: 15853599--15853640 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
15853589 TAAATTAAAA
*
15853599 TGTTTTAATTTTAGTTTAATT
1 TGTTTTAATTTCAGTTTAATT
15853620 TGTTTTAATTTCCA-TTTAATT
1 TGTTTTAATTT-CAGTTTAATT
15853641 ACAAAATTGC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.24, C:0.05, G:0.07, T:0.64
Consensus pattern (21 bp):
TGTTTTAATTTCAGTTTAATT
Done.