Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 61 of 170
Found at i:17800810 original size:520 final size:519
Alignment explanation
Indices: 17799846--17801135 Score: 1983
Period size: 520 Copynumber: 2.5 Consensus size: 519
17799836 CTTGCTTTCT
* * * * * * * *** *
17799846 TCAATTTTAACGCCAGGGAGATAAGTTTCGCTGCCTTAAGCTTTAATCTGCTCTGCTACAGTGCT
1 TCAATCTTAACACCAGGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCCGCTGCAACACC
* * * ** * *
17799911 AGGGAAACCAGATTCGCTATCTTTAGCCTTAATCCGTTCCACTATAATGCCAAAGAGATTGGATT
66 AGGGAAATCAGATTCGCTACCTTTAGCTTTAATCTATTCCACTGTAATGCCAAAGAGATAGGATT
* * * * * * *
17799976 CGCTGCCCT-TAGCTTTAATCCACTCCACTTCAAC--TATTCCATTCCACTGCAAGTCAGGGAAA
131 CGCTG-CCTACAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCACTGCACGCCAGGGAAA
* *
17800038 CAAGATTTGCTACCTTTAGCTTTAATCTGTTCCACTGCAACACCAGGGAAGTAAGACTGGTTACT
195 CAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTACAACACCAGGGAAGTAAGACTGGTTACT
* *
17800103 TTCAGTCTTAACGACAGGGAGGTAAGATTCGCTACCCTCAGCTTTAATTTGCTCCGTTGCAACAC
260 TTCAGTCTTAACGACAGGGAGGTAAGATTCACTACCCTCAGCTTTAATTTGCTCCGCTGCAACAC
17800168 CAGGGAAACCAGATTCGCTACCTTTAGCTTTAATCTGTTCTACTGTAATACCAAAGAGATAGGAT
325 CAGGGAAACCAGATTCGCTACCTTTAGCTTTAATCTGTTCTACTGTAATACCAAAGAGATAGGAT
*
17800233 TTGCTGCCTACAGCTGTAATCCACTCCACTTCAGCTATTTCATTCCACTACAACGTCCGGGAAAC
390 TCGCTGCCTACAGCTGTAATCCACTCCACTTCAGCTATTTCATTCCACTACAACGTCCGGGAAAC
* *
17800298 AAGATTCGCTACCTTTAGCTTTAATCTGTTCCCTTGCAACGTCAGAGAAGTAAGACTGGTTACTC
455 AAGATTCGCTACCTTTAGCTTTAATCTGTTCCCCTGCAACGTCAGAGAAGTAAGACTGATTACTC
17800363 TCAATCTTAACACCAGGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCCGCTGCAACACC
1 TCAATCTTAACACCAGGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCCGCTGCAACACC
* * *
17800428 AGGGAAATCAAATTCGCTACCTGTAGGTTTAATCTATTCCACTGTAATGCCAAAGAGATAGGATT
66 AGGGAAATCAGATTCGCTACCTTTAGCTTTAATCTATTCCACTGTAATGCCAAAGAGATAGGATT
*
17800493 CGCTGCCTACAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCACTGCAGCGCCAAGGAAA
131 CGCTGCCTACAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCACTGCA-CGCCAGGGAAA
*
17800558 TAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTACAACACCAGGGAAGTAAGACTGGTTACT
195 CAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTACAACACCAGGGAAGTAAGACTGGTTACT
* * * *
17800623 TTCAGTCTTAACGACAGGGAGGTATGATTCACTGCCCTCAGCTTTAATTTGTTTCGCTGCAACAC
260 TTCAGTCTTAACGACAGGGAGGTAAGATTCACTACCCTCAGCTTTAATTTGCTCCGCTGCAACAC
* *
17800688 CAGGGAAACCAGGTTCGCTACCTTTAGCTTTAATCTGTTCTACTGTAATGCCAAAGAGATAGGAT
325 CAGGGAAACCAGATTCGCTACCTTTAGCTTTAATCTGTTCTACTGTAATACCAAAGAGATAGGAT
* *
17800753 TCGCTGCCTACAGTTGTAATCCACTCCACTTCAGCTATTTCATTCCACTATAACGTCCGGGAAAC
390 TCGCTGCCTACAGCTGTAATCCACTCCACTTCAGCTATTTCATTCCACTACAACGTCCGGGAAAC
* *
17800818 AAGATTCGCTACCTTTAGTTTTAATCTGTTCCCCTGCGACGTCAGAGAAGTAAGACTGATTACTC
455 AAGATTCGCTACCTTTAGCTTTAATCTGTTCCCCTGCAACGTCAGAGAAGTAAGACTGATTACTC
* * ** * * *
17800883 TCAGTCTTAACACCAAGGAGATAAGATTCGCTATCCTCAACTTTAATCTGCTTCGCTGCAAGACC
1 TCAATCTTAACACCAGGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCCGCTGCAACACC
17800948 AGGGAAATCAGATTCGCTACCTTTAGCTTTAATCTATTCCACTGTAATGCCAAAGAGATAGGATT
66 AGGGAAATCAGATTCGCTACCTTTAGCTTTAATCTATTCCACTGTAATGCCAAAGAGATAGGATT
* *
17801013 CGCTGCCCACAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCACTGCAACGCTAGGGAAA
131 CGCTGCCTACAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCACTGC-ACGCCAGGGAAA
* * * **
17801078 CAAGATTCGCTACCTTTAACTTTAACCTATTCCACTACAATGCCAGGGAAGTAAGACT
195 CAAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTACAACACCAGGGAAGTAAGACT
17801136 AGTGTCTTCA
Statistics
Matches: 702, Mismatches: 66, Indels: 7
0.91 0.09 0.01
Matches are distributed among these distances:
516 3 0.00
517 136 0.19
519 15 0.02
520 547 0.78
521 1 0.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (519 bp):
TCAATCTTAACACCAGGGAGATAAGATTCGCTGCCCTCAGCTTTAATCTGCTCCGCTGCAACACC
AGGGAAATCAGATTCGCTACCTTTAGCTTTAATCTATTCCACTGTAATGCCAAAGAGATAGGATT
CGCTGCCTACAGCTTTAATCCGCTCCACTTCAGCTTTAATCTATTCCACTGCACGCCAGGGAAAC
AAGATTCGCTACCTTTAGCTTTAATCTGTTCCACTACAACACCAGGGAAGTAAGACTGGTTACTT
TCAGTCTTAACGACAGGGAGGTAAGATTCACTACCCTCAGCTTTAATTTGCTCCGCTGCAACACC
AGGGAAACCAGATTCGCTACCTTTAGCTTTAATCTGTTCTACTGTAATACCAAAGAGATAGGATT
CGCTGCCTACAGCTGTAATCCACTCCACTTCAGCTATTTCATTCCACTACAACGTCCGGGAAACA
AGATTCGCTACCTTTAGCTTTAATCTGTTCCCCTGCAACGTCAGAGAAGTAAGACTGATTACTC
Found at i:17801060 original size:21 final size:21
Alignment explanation
Indices: 17801022--17801062 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
17801012 TCGCTGCCCA
*
17801022 CAGCTTTAATCCGCTCCACTT
1 CAGCTTTAATCCACTCCACTT
* *
17801043 CAGCTTTAATCTATTCCACT
1 CAGCTTTAATCCACTCCACT
17801063 GCAACGCTAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.22, C:0.34, G:0.07, T:0.37
Consensus pattern (21 bp):
CAGCTTTAATCCACTCCACTT
Found at i:17810966 original size:14 final size:15
Alignment explanation
Indices: 17810942--17810972 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
17810932 CATCAAATAA
17810942 AAATAAAATAAAAAT
1 AAATAAAATAAAAAT
17810957 AAAT-AAATAAAAAT
1 AAATAAAATAAAAAT
17810971 AA
1 AA
17810973 TAGAAAATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.75
15 4 0.25
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (15 bp):
AAATAAAATAAAAAT
Found at i:17823270 original size:21 final size:20
Alignment explanation
Indices: 17823244--17823292 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
17823234 AACTCCAAGT
17823244 TAAAAAAAACTAAATATGCAA
1 TAAAAAAAACTAAAT-TGCAA
* *
17823265 TAAAAAATACTAAATTGCTA
1 TAAAAAAAACTAAATTGCAA
*
17823285 GAAAAAAA
1 TAAAAAAA
17823293 GCTCTTTAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.65, C:0.08, G:0.06, T:0.20
Consensus pattern (20 bp):
TAAAAAAAACTAAATTGCAA
Found at i:17823271 original size:20 final size:19
Alignment explanation
Indices: 17823246--17823292 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
17823236 CTCCAAGTTA
*
17823246 AAAAAAACTAAATATGCAAT
1 AAAAAAACTAAAT-TGCAAG
*
17823266 AAAAAATACTAAATTGCTAG
1 AAAAAA-ACTAAATTGCAAG
17823286 AAAAAAA
1 AAAAAAA
17823293 GCTCTTTAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 1 0.04
20 16 0.67
21 7 0.29
ACGTcount: A:0.66, C:0.09, G:0.06, T:0.19
Consensus pattern (19 bp):
AAAAAAACTAAATTGCAAG
Found at i:17830760 original size:43 final size:43
Alignment explanation
Indices: 17830697--17830778 Score: 137
Period size: 43 Copynumber: 1.9 Consensus size: 43
17830687 TTTCTCGCAT
* *
17830697 AAACGCCGCTAAAGAACATGATCTTTAGCAGCGCTTTTAACCC
1 AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCCTTTAACCC
*
17830740 AAACGCCGCTAAAGATCATGACCTTTAGCAGCGCCTTTA
1 AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCCTTTA
17830779 TAAGATACAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCCTTTAACCC
Found at i:17830844 original size:43 final size:43
Alignment explanation
Indices: 17830797--17830896 Score: 114
Period size: 43 Copynumber: 2.3 Consensus size: 43
17830787 ACCGCTAAGG
*
17830797 GTCATGTTGTTTAGCAACGCTTT-TATAGCAAACG-TCACTAAAA
1 GTCATGTTCTTTAGCAACG-TTTCTATAGCAAACGCT-ACTAAAA
** * *
17830840 GTCATGTTCTTTAGCGGCGTTTCTATAGCAAACGCTGCTAAAG
1 GTCATGTTCTTTAGCAACGTTTCTATAGCAAACGCTACTAAAA
*
17830883 GTCATGTTCATTAG
1 GTCATGTTCTTTAG
17830897 TGGCACTTCT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
42 3 0.06
43 45 0.92
44 1 0.02
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (43 bp):
GTCATGTTCTTTAGCAACGTTTCTATAGCAAACGCTACTAAAA
Found at i:17830907 original size:43 final size:43
Alignment explanation
Indices: 17830820--17830941 Score: 147
Period size: 43 Copynumber: 2.8 Consensus size: 43
17830810 GCAACGCTTT
* * * **
17830820 TATAGCAAACG-TCACTAAAAGTCATGTTCTTTAGCGGCGTTTC
1 TATAGCAAACGCT-GCTAAAGGTCATGTTCATTAGCGGCACTTC
*
17830863 TATAGCAAACGCTGCTAAAGGTCATGTTCATTAGTGGCACTTC
1 TATAGCAAACGCTGCTAAAGGTCATGTTCATTAGCGGCACTTC
* * *
17830906 TATAGCAAACCCCGCTAAAGGTCTTGTTCATTAGCG
1 TATAGCAAACGCTGCTAAAGGTCATGTTCATTAGCG
17830942 ACTCTTTTTA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
43 67 0.99
44 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (43 bp):
TATAGCAAACGCTGCTAAAGGTCATGTTCATTAGCGGCACTTC
Found at i:17831312 original size:21 final size:21
Alignment explanation
Indices: 17831285--17831355 Score: 88
Period size: 21 Copynumber: 3.4 Consensus size: 21
17831275 GTGCTTTCTG
*
17831285 CTCTGCTTCCCTCGCTGCTGC
1 CTCTGCTTCCCTCGCTACTGC
* * *
17831306 CTTTGCTTCTCTCGCTATTGC
1 CTCTGCTTCCCTCGCTACTGC
*
17831327 CTCTACTTCCCTCGCTACTGC
1 CTCTGCTTCCCTCGCTACTGC
*
17831348 ATCTGCTT
1 CTCTGCTT
17831356 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.06, C:0.41, G:0.14, T:0.39
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTACTGC
Found at i:17833638 original size:9 final size:9
Alignment explanation
Indices: 17833624--17833668 Score: 63
Period size: 9 Copynumber: 5.0 Consensus size: 9
17833614 TAAGTATAAT
17833624 TAAGTTATG
1 TAAGTTATG
17833633 TAAGTTATG
1 TAAGTTATG
17833642 TAAGTTATG
1 TAAGTTATG
* * *
17833651 TGACTTACG
1 TAAGTTATG
17833660 TAAGTTATG
1 TAAGTTATG
17833669 ATATGATATA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.31, C:0.04, G:0.22, T:0.42
Consensus pattern (9 bp):
TAAGTTATG
Found at i:17834084 original size:78 final size:72
Alignment explanation
Indices: 17833991--17834153 Score: 209
Period size: 73 Copynumber: 2.2 Consensus size: 72
17833981 AAATTGAAAT
* *
17833991 ATAATTAATTTGTCTATATTTATCAAAATAAGTAAAATATATATATATAAAAAAAGACTTTGAGT
1 ATAAATAATTTGTCTATATTTATCAAAATAAGTAAAAT-TA-A-A-A-AAAAAAAGACTTGGAGT
*
17834056 TAGCATTACAAG
61 TAGCATTACAAA
* * *
17834068 ATACAATAATTTGTCTATATTTATCAAAATAAGTTAAATTAAAAAAAATAAGACTTGGAGTTGGC
1 ATA-AATAATTTGTCTATATTTATCAAAATAAGTAAAATTAAAAAAAAAAAGACTTGGAGTTAGC
17834133 ATTACAAA
65 ATTACAAA
17834141 ATAAATATATTTG
1 ATAAATA-ATTTG
17834154 GCAAAATAAT
Statistics
Matches: 78, Mismatches: 6, Indels: 8
0.85 0.07 0.09
Matches are distributed among these distances:
72 4 0.05
73 33 0.42
74 1 0.01
75 1 0.01
76 1 0.01
77 5 0.06
78 33 0.42
ACGTcount: A:0.48, C:0.07, G:0.10, T:0.36
Consensus pattern (72 bp):
ATAAATAATTTGTCTATATTTATCAAAATAAGTAAAATTAAAAAAAAAAAGACTTGGAGTTAGCA
TTACAAA
Found at i:17834345 original size:66 final size:66
Alignment explanation
Indices: 17834271--17834409 Score: 163
Period size: 66 Copynumber: 2.1 Consensus size: 66
17834261 TATAAAATCG
* * * * *
17834271 ATAATTTATT-AAATTACATAAAAAATTGATCATTTCTTGACATAAAATCAAATAAACTAATCAA
1 ATAATTTATTCAAATTA-ATAAAAAATCGATAATTTATTCACATAAAACCAAATAAACTAATCAA
17834335 AC
65 AC
* ** * * *
17834337 ATAATTTATTCAATTTAATCGAAAATCGATAATTTATTCACATTAAACCGAATAAAGTAATCAAA
1 ATAATTTATTCAAATTAATAAAAAATCGATAATTTATTCACATAAAACCAAATAAACTAATCAAA
17834402 C
66 C
17834403 ATAATTT
1 ATAATTT
17834410 TTTTTCAATT
Statistics
Matches: 61, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
66 56 0.92
67 5 0.08
ACGTcount: A:0.49, C:0.12, G:0.04, T:0.35
Consensus pattern (66 bp):
ATAATTTATTCAAATTAATAAAAAATCGATAATTTATTCACATAAAACCAAATAAACTAATCAAA
C
Found at i:17837330 original size:7 final size:7
Alignment explanation
Indices: 17837318--17837544 Score: 118
Period size: 7 Copynumber: 31.9 Consensus size: 7
17837308 ACTAATTAAT
17837318 CTAAACC
1 CTAAACC
17837325 CTAAACC
1 CTAAACC
*
17837332 CTTAATCC
1 C-TAAACC
17837340 TCTAAACC
1 -CTAAACC
17837348 CTAAACC
1 CTAAACC
17837355 CTAAACCC
1 CTAAA-CC
17837363 CT-AACC
1 CTAAACC
*
17837369 CTTAACCC
1 C-TAAACC
17837377 CTAAACC
1 CTAAACC
*
17837384 TTAAACC
1 CTAAACC
*
17837391 C-CAACAC
1 CTAAAC-C
17837398 CTAAACC
1 CTAAACC
*
17837405 GTAAACC
1 CTAAACC
** *
17837412 AGAATCC
1 CTAAACC
17837419 CTAAACC
1 CTAAACC
*
17837426 CATAATCC
1 C-TAAACC
* *
17837434 ATAAATC
1 CTAAACC
* **
17837441 TTAAATA
1 CTAAACC
*
17837448 GT-AACTC
1 CTAAAC-C
*
17837455 ATAAACC
1 CTAAACC
*
17837462 TTAAACC
1 CTAAACC
*
17837469 ATAAACC
1 CTAAACC
*
17837476 ATAAACC
1 CTAAACC
* *
17837483 ATAATCC
1 CTAAACC
17837490 CTAAACC
1 CTAAACC
*
17837497 CTAAATC
1 CTAAACC
* *
17837504 TTAAAAC
1 CTAAACC
*
17837511 ATAAACC
1 CTAAACC
* *
17837518 ATATACC
1 CTAAACC
17837525 CTAAACC
1 CTAAACC
*
17837532 ATAAACC
1 CTAAACC
17837539 CTAAAC
1 CTAAAC
17837545 TATAATGATA
Statistics
Matches: 170, Mismatches: 40, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
6 8 0.05
7 132 0.78
8 29 0.17
9 1 0.01
ACGTcount: A:0.44, C:0.34, G:0.01, T:0.20
Consensus pattern (7 bp):
CTAAACC
Found at i:17837366 original size:15 final size:15
Alignment explanation
Indices: 17837318--17837404 Score: 92
Period size: 15 Copynumber: 5.9 Consensus size: 15
17837308 ACTAATTAAT
17837318 CTAAACCCTAAACCC
1 CTAAACCCTAAACCC
* *
17837333 TTAATCCTCTAAA-CC
1 CTAAACC-CTAAACCC
17837348 CTAAACCCTAAACCC
1 CTAAACCCTAAACCC
*
17837363 CT-AACCCTTAACCC
1 CTAAACCCTAAACCC
*
17837377 CTAAACCTTAAACCC
1 CTAAACCCTAAACCC
17837392 C--AACACCTAAACC
1 CTAAAC-CCTAAACC
17837405 GTAAACCAGA
Statistics
Matches: 60, Mismatches: 8, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
13 3 0.05
14 25 0.42
15 27 0.45
16 5 0.08
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.18
Consensus pattern (15 bp):
CTAAACCCTAAACCC
Found at i:17837404 original size:29 final size:29
Alignment explanation
Indices: 17837318--17837404 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
17837308 ACTAATTAAT
*
17837318 CTAAACCCTAAACCCTTAATCCTCTAAA-CC
1 CTAAACCCTAAACCCCTAA-CC-CTAAACCC
*
17837348 CTAAACCCTAAACCCCTAACCCTTAACCC
1 CTAAACCCTAAACCCCTAACCCTAAACCC
*
17837377 CTAAACCTTAAACCCC-AACACCTAAACC
1 CTAAACCCTAAACCCCTAAC-CCTAAACC
17837405 GTAAACCAGA
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
28 7 0.14
29 26 0.51
30 18 0.35
ACGTcount: A:0.38, C:0.44, G:0.00, T:0.18
Consensus pattern (29 bp):
CTAAACCCTAAACCCCTAACCCTAAACCC
Found at i:17838065 original size:114 final size:115
Alignment explanation
Indices: 17837860--17838106 Score: 327
Period size: 114 Copynumber: 2.2 Consensus size: 115
17837850 GTCGACCTAT
* * *
17837860 AAAAAGCGCCACTAATGCCACTAAAAGCTCAACATAAAACGACGGTGTTGTGGCTAATTTTTTGC
1 AAAAAGCGCCGCTAATGCCACTAAAAGCTCAACATAAAACAACGGAGTTGTGGCTAATTTTTTGC
* * * * * *
17837925 GACATTTTTCAATGAGCGCCGCTAATGCTCGACCTATAGTGGCGTTTTTC
66 GACACTTTTCAAAGAGCGCCGATAATGCTCGACCTATAGCGACGCTTTTC
* *
17837975 AAAAAGCGCCGCTAATTCCACT-AAAGCTCAACATAAAACAATGGAGTTGT-GCTTAATTTTTTG
1 AAAAAGCGCCGCTAATGCCACTAAAAGCTCAACATAAAACAACGGAGTTGTGGC-TAATTTTTTG
* * * *
17838038 CGCCGCTTTTCAAAGAGCGCCGATAATGCTTGAGCTATAGCGACGCTTTTC
65 CGACACTTTTCAAAGAGCGCCGATAATGCTCGACCTATAGCGACGCTTTTC
*
17838089 GAAAAGCGCCGCTAATGC
1 AAAAAGCGCCGCTAATGC
17838107 TCGACCTATA
Statistics
Matches: 114, Mismatches: 17, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
113 2 0.02
114 92 0.81
115 20 0.18
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.27
Consensus pattern (115 bp):
AAAAAGCGCCGCTAATGCCACTAAAAGCTCAACATAAAACAACGGAGTTGTGGCTAATTTTTTGC
GACACTTTTCAAAGAGCGCCGATAATGCTCGACCTATAGCGACGCTTTTC
Found at i:17838085 original size:40 final size:39
Alignment explanation
Indices: 17838041--17838146 Score: 131
Period size: 40 Copynumber: 2.6 Consensus size: 39
17838031 TTTTTTGCGC
* * * *
17838041 CGCTTTTCAAAGAGCGCCGATAATGCTTGAGCTATAGCGA
1 CGCTTTTCAAA-AGCGCCGCTAATGCTCGACCTATAGAGA
*
17838081 CGCTTTTCGAAAAGCGCCGCTAATGCTCGACCTATAGAGG
1 CGCTTTTC-AAAAGCGCCGCTAATGCTCGACCTATAGAGA
*
17838121 CACTTTTCAACAAGCGCCGCTAATGC
1 CGCTTTTCAA-AAGCGCCGCTAATGC
17838147 CACTAAAGCT
Statistics
Matches: 58, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
39 2 0.03
40 53 0.91
41 3 0.05
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (39 bp):
CGCTTTTCAAAAGCGCCGCTAATGCTCGACCTATAGAGA
Found at i:17839249 original size:40 final size:40
Alignment explanation
Indices: 17839187--17839270 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
17839177 TTTGCTGCGC
* * *
17839187 TTTTCAAAGAGCGCCGCCAATGCTCGACCTATAGCGGCGT
1 TTTTCAAAGAGCGCCACCAATGCCCGACCTATAGCGGCAT
* *
17839227 TTTTCAACA-AGCGCCACTAATGCCCGAGCTATAGCGGCAT
1 TTTTCAA-AGAGCGCCACCAATGCCCGACCTATAGCGGCAT
17839267 TTTT
1 TTTT
17839271 TGTCAAAACT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
40 37 0.97
41 1 0.03
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (40 bp):
TTTTCAAAGAGCGCCACCAATGCCCGACCTATAGCGGCAT
Found at i:17841731 original size:18 final size:18
Alignment explanation
Indices: 17841705--17841746 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
17841695 GATTGGGAAA
* *
17841705 AGGAAACATATAAAGGTT
1 AGGATACATATAAAGGCT
*
17841723 AGGATACATATAAGGGCT
1 AGGATACATATAAAGGCT
17841741 AGGATA
1 AGGATA
17841747 TGCACCTGGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.45, C:0.07, G:0.26, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAAGGCT
Found at i:17845456 original size:12 final size:12
Alignment explanation
Indices: 17845441--17845474 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
17845431 TTTATTATCA
*
17845441 TTATTATTTTTT
1 TTATTATTATTT
17845453 TTATTATTATTT
1 TTATTATTATTT
*
17845465 TTATTTTTAT
1 TTATTATTAT
17845475 ATTCATGCGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (12 bp):
TTATTATTATTT
Found at i:17845457 original size:21 final size:21
Alignment explanation
Indices: 17845431--17845472 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
17845421 AAAATTGTTA
17845431 TTTATTATCATTATTATTTTT
1 TTTATTATCATTATTATTTTT
* *
17845452 TTTATTATTATTTTTATTTTT
1 TTTATTATCATTATTATTTTT
17845473 ATATTCATGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTATTATCATTATTATTTTT
Found at i:17845461 original size:18 final size:18
Alignment explanation
Indices: 17845428--17845474 Score: 60
Period size: 18 Copynumber: 2.6 Consensus size: 18
17845418 AAGAAAATTG
17845428 TTATTTATTATCATTATTAT
1 TTATTT-TTATCATTATT-T
*
17845448 TT-TTTTTATTATTATTT
1 TTATTTTTATCATTATTT
17845465 TTATTTTTAT
1 TTATTTTTAT
17845475 ATTCATGCGC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
17 3 0.12
18 17 0.68
19 3 0.12
20 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.74
Consensus pattern (18 bp):
TTATTTTTATCATTATTT
Found at i:17845741 original size:25 final size:23
Alignment explanation
Indices: 17845692--17845742 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 23
17845682 TATATTTTTA
* *
17845692 TATTTTTCTTATGTTCATAAGTG
1 TATTTTTCTTATATTCATAAATG
*
17845715 TATTTTTTTTATATTCATATTAATG
1 TATTTTTCTTATATTCATA--AATG
17845740 TAT
1 TAT
17845743 ATATTATGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
23 17 0.74
25 6 0.26
ACGTcount: A:0.25, C:0.06, G:0.08, T:0.61
Consensus pattern (23 bp):
TATTTTTCTTATATTCATAAATG
Found at i:17846339 original size:98 final size:98
Alignment explanation
Indices: 17846230--17846426 Score: 385
Period size: 98 Copynumber: 2.0 Consensus size: 98
17846220 TTAAAAATAA
17846230 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
17846295 CTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 CTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
17846328 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
17846393 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 CTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
17846426 T
1 T
17846427 TTTATTGTAC
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 98 1.00
ACGTcount: A:0.28, C:0.12, G:0.24, T:0.36
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
CTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:17850876 original size:54 final size:54
Alignment explanation
Indices: 17850794--17850906 Score: 217
Period size: 54 Copynumber: 2.1 Consensus size: 54
17850784 TTTTTTATTG
17850794 AATTTGTTATTTTTTGGAATACCTCATTCTTTTCCAAGATATACATTCCCAATC
1 AATTTGTTATTTTTTGGAATACCTCATTCTTTTCCAAGATATACATTCCCAATC
*
17850848 AATTTTTTATTTTTTGGAATACCTCATTCTTTTCCAAGATATACATTCCCAATC
1 AATTTGTTATTTTTTGGAATACCTCATTCTTTTCCAAGATATACATTCCCAATC
17850902 AATTT
1 AATTT
17850907 CTTTGTTATC
Statistics
Matches: 58, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.46
Consensus pattern (54 bp):
AATTTGTTATTTTTTGGAATACCTCATTCTTTTCCAAGATATACATTCCCAATC
Found at i:17852193 original size:128 final size:130
Alignment explanation
Indices: 17851927--17852342 Score: 298
Period size: 133 Copynumber: 3.2 Consensus size: 130
17851917 ATCCCATCCT
* * * ** * * *
17851927 CCTGAAGTTGTAGTGGGGCAGACTGAAGATAGCAAGTCTTATC-CTCCTGAAGTTGCAGTGGGGC
1 CCTGAAGTTGCAGTGGAGCAGACTGAAAACCGCAAATCTTATCTC-CCTGAAGTTGCAGTAGAGC
* * *
17851991 AGA-CTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCC
65 AGATC-G--CAT--CTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAGCCGATAATCC
17852055 TATCTC
125 TATCTC
* * *
17852061 CCTGAAGTTGCAGTGGAGCAGA-TTAAAACCTCAAATCTTATCTCTCTGAAGTTGCAG-AGAGCA
1 CCTGAAGTTGCAGTGGAGCAGACTGAAAACCGCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCA
* * *
17852124 GATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGTAAG-C-A-AGTCTTAT
66 GATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TAA--AAGCCGATAATCCTAT
17852186 C-C
128 CTC
* * * ** * *
17852188 TCCTGAAGTTGTAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGC
1 -CCTGAAGTTGCAGTGGAGCAGACTGAAAACCGCAAATCTTATCTCCCTGAAGTTGCAGTAGAGC
*** * * * *
17852253 AGATTAAACCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA-CC--TCAGATC
65 AGATCGCA-TC--TAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TAAAAGCCGAT-A-ATC
*
17852315 TTATCTC
124 CTATCTC
* *
17852322 TCTGAAGTTGCAG-AGAGCAGA
1 CCTGAAGTTGCAGTGGAGCAGA
17852343 TCGCATCTAG
Statistics
Matches: 225, Mismatches: 41, Indels: 34
0.75 0.14 0.11
Matches are distributed among these distances:
127 1 0.00
128 60 0.27
129 31 0.14
130 12 0.05
131 7 0.03
132 14 0.06
133 78 0.35
134 22 0.10
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (130 bp):
CCTGAAGTTGCAGTGGAGCAGACTGAAAACCGCAAATCTTATCTCCCTGAAGTTGCAGTAGAGCA
GATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATAAAAGCCGATAATCCTATCTC
Found at i:17852244 original size:217 final size:217
Alignment explanation
Indices: 17851788--17852453 Score: 996
Period size: 217 Copynumber: 3.1 Consensus size: 217
17851778 GGAGCAAATC
* * * * *
17851788 GAAGATTGCAAATCTTATCTCCCTAAAGTTGCAGTGGAGCAAATTAAAGCCGATAATCCTATCCC
1 GAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTC
* * * * ** * *
17851853 CCTGAAGTTGCAGTGGAGTGGATCACAACATTGGATCTTATCTCTTTAAAGTTGCAGAGAGCAGA
66 CCTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
* *
17851918 TC-C--C-A-TC----CT-CCTGAAGTTGTAGTGGGGCAGACTGAAG-ATAGCAAGTCTTATCCT
131 TCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTA-AGCAAGTCTTATCCT
17851972 CCTGAAGTTGCAGTGGGGCAGACT
194 CCTGAAGTTGCAGTGGGGCAGACT
17851996 GAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTC
1 GAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTC
* *
17852061 CCTGAAGTTGCAGTGGAGCAGATTAAAACCTCAAATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
66 CCTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
*
17852126 TCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGACTAAGTAAGCAAGTCTTATCCTCC
131 TCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCC
*
17852191 TGAAGTTGTAGTGGGGCAGACT
196 TGAAGTTGCAGTGGGGCAGACT
*
17852213 GAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACCCGATAATCCTATCTC
1 GAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTC
17852278 CCTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
66 CCTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
* *
17852343 TCGCATCTAGTTTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCC
131 TCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCC
*
17852408 TGAAGTTGCAGTGAGGCAGACT
196 TGAAGTTGCAGTGGGGCAGACT
**
17852430 GAAGATTTC-AGATCTTATCTCCCT
1 GAAGATGGCAAG-TCTTATCTCCCT
17852454 AAGCAGTAGT
Statistics
Matches: 417, Mismatches: 29, Indels: 15
0.90 0.06 0.03
Matches are distributed among these distances:
208 117 0.28
209 1 0.00
211 1 0.00
212 1 0.00
213 2 0.00
216 2 0.00
217 271 0.65
218 22 0.05
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.27
Consensus pattern (217 bp):
GAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGATAATCCTATCTC
CCTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGA
TCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATCCTCC
TGAAGTTGCAGTGGGGCAGACT
Found at i:17852250 original size:173 final size:173
Alignment explanation
Indices: 17851961--17852290 Score: 438
Period size: 173 Copynumber: 1.9 Consensus size: 173
17851951 GAAGATAGCA
* *
17851961 AGTCTTATCCTCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTT
1 AGTCTTATCCTCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGTCTTATCTCCCTGAAGTT
* * *
17852026 GCAGTGGAGCAGATTAAAGCCGATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACC
66 GCAGTGGAGCAGACTAAAGACGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAACC
* *
17852091 TC-A-AATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCT
130 -CGATAATCCTATCTCCCTGAAGTTGCAGAGAGCAGATCGCATCT
*
17852134 AGTCTTAT-CTCCCTGAAGTTGCAGTGGAGTAGACT-AAG-TAAGCAAGTCTTATC-CTCCTGAA
1 AGTCTTATCCT-CCTGAAGTTGCAGTGGAGCAGACTGAAGAT-AGCAAGTCTTATCTC-CCTGAA
* * * * * *
17852195 GTTGTAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA
63 GTTGCAGTGGAGCAGACTAAAGACGACAA-TCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAA
17852260 ACCCGATAATCCTATCTCCCTGAAGTTGCAG
127 ACCCGATAATCCTATCTCCCTGAAGTTGCAG
17852291 TGGAGCGGAT
Statistics
Matches: 137, Mismatches: 14, Indels: 12
0.84 0.09 0.07
Matches are distributed among these distances:
171 3 0.02
172 50 0.36
173 84 0.61
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (173 bp):
AGTCTTATCCTCCTGAAGTTGCAGTGGAGCAGACTGAAGATAGCAAGTCTTATCTCCCTGAAGTT
GCAGTGGAGCAGACTAAAGACGACAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAACCC
GATAATCCTATCTCCCTGAAGTTGCAGAGAGCAGATCGCATCT
Found at i:17852413 original size:84 final size:85
Alignment explanation
Indices: 17852272--17852427 Score: 203
Period size: 84 Copynumber: 1.8 Consensus size: 85
17852262 CCGATAATCC
* * * *
17852272 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAG
1 TATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAACCTAAGATCTTATCTCTCTGAAGTTGCAGAG
17852337 A-GCAGATCGCATCTAGTTT
66 AGGCAGATCGCATCTAGTTT
*
17852356 TATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAGC-AAG-TCTTATC-CTCCTGAAGTTGCA
1 TATCTCCCTAAAGTTGCAGTGGAGCAGACTAA--AACCTAAGATCTTATCTCT-CTGAAGTTGCA
*
17852418 GTGAGGCAGA
63 GAGAGGCAGA
17852428 CTGAAGATTT
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
83 2 0.03
84 50 0.81
85 7 0.11
86 3 0.05
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.28
Consensus pattern (85 bp):
TATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAACCTAAGATCTTATCTCTCTGAAGTTGCAGAG
AGGCAGATCGCATCTAGTTT
Found at i:17852414 original size:44 final size:43
Alignment explanation
Indices: 17851927--17852434 Score: 380
Period size: 44 Copynumber: 11.7 Consensus size: 43
17851917 ATCCCATCCT
* *
17851927 CCTGAAGTTGTAGTGGGGCAGACTGAAGATAGCAAGTCTTATC-C
1 CCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCTTATCTC
* *
17851971 TCCTGAAGTTGCAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTC
1 -CCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCTTATCTC
* * *
17852017 CCTGAAGTTGCAGTGGAGCAGA-TTA-AAGCCGATAATCCTATCTC
1 CCTGAAGTTGCAGTGGAGCAGACTAAGAAG-C-A-AGTCTTATCTC
* * *
17852061 CCTGAAGTTGCAGTGGAGCAGATTAA-AACCTCAAATCTTATCTC
1 CCTGAAGTTGCAGTGGAGCAGACTAAGAA--GCAAGTCTTATCTC
* * * * * *
17852105 TCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTCTTATCTC
1 CCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTC
*
17852145 CCTGAAGTTGCAGTGGAGTAGACTAAGTAAGCAAGTCTTATC-C
1 CCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTATCTC
* * *
17852188 TCCTGAAGTTGTAGTGGGGCAGACTGAAGATGGCAAGTCTTATCTC
1 -CCTGAAGTTGCAGTGGAGCAGACT-AAGA-AGCAAGTCTTATCTC
* ** * *
17852234 CCTGAAGTTGCAGTGGAGCAGATTAA-ACCCGATAATCCTATCTC
1 CCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-A-AGTCTTATCTC
* * * *
17852278 CCTGAAGTTGCAGTGGAGCGGATTAA-AACCTCAGATCTTATCTC
1 CCTGAAGTTGCAGTGGAGCAGACTAAGAAGC-AAG-TCTTATCTC
* * * * * * *
17852322 TCTGAAGTTGCAG-AGAGCAGA-T-CGCATCTAGTTTTATCTC
1 CCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTC
*
17852362 CCTAAAGTTGCAGTGGAGCAGACTAAGTAAGCAAGTCTTATC-C
1 CCTGAAGTTGCAGTGGAGCAGACTAAG-AAGCAAGTCTTATCTC
17852405 TCCTGAAGTTGCAGT-GAGGCAGACTGAAGA
1 -CCTGAAGTTGCAGTGGA-GCAGACT-AAGA
17852435 TTTCAGATCT
Statistics
Matches: 379, Mismatches: 57, Indels: 55
0.77 0.12 0.11
Matches are distributed among these distances:
40 43 0.11
41 16 0.04
42 10 0.03
43 24 0.06
44 177 0.47
45 106 0.28
46 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (43 bp):
CCTGAAGTTGCAGTGGAGCAGACTAAGAAGCAAGTCTTATCTC
Found at i:17853254 original size:14 final size:14
Alignment explanation
Indices: 17853223--17853253 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
17853213 GATTTACAGC
17853223 TTTTATTTTTTTTA
1 TTTTATTTTTTTTA
17853237 TTTTA-TTTTTTTA
1 TTTTATTTTTTTTA
17853250 TTTT
1 TTTT
17853254 TTACAAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTTATTTTTTTTA
Found at i:17853864 original size:3 final size:3
Alignment explanation
Indices: 17853850--17853892 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
17853840 AAATTGTTAT
* * * *
17853850 TTA TTA TCA TTA TTA TTT TTT TTA TTA TTA TTA TTA TTT TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
17853893 ATTCATGCGC
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (3 bp):
TTA
Found at i:17853873 original size:21 final size:21
Alignment explanation
Indices: 17853849--17853890 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
17853839 AAAATTGTTA
17853849 TTTATTATCATTATTATTTTT
1 TTTATTATCATTATTATTTTT
*
17853870 TTTATTATTATTATTATTTTT
1 TTTATTATCATTATTATTTTT
17853891 ATATTCATGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.00, T:0.74
Consensus pattern (21 bp):
TTTATTATCATTATTATTTTT
Found at i:17853879 original size:18 final size:18
Alignment explanation
Indices: 17853846--17853892 Score: 67
Period size: 18 Copynumber: 2.6 Consensus size: 18
17853836 AAGAAAATTG
17853846 TTATTTATTATCATTATTA
1 TTATTT-TTATCATTATTA
* *
17853865 TTTTTTTTATTATTATTA
1 TTATTTTTATCATTATTA
17853883 TTATTTTTAT
1 TTATTTTTAT
17853893 ATTCATGCGC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
18 20 0.80
19 5 0.20
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (18 bp):
TTATTTTTATCATTATTA
Found at i:17854165 original size:28 final size:27
Alignment explanation
Indices: 17854111--17854171 Score: 70
Period size: 26 Copynumber: 2.2 Consensus size: 27
17854101 TATATATTTT
* *
17854111 TATATTTTTCTTATGTTCATAAGTGTA
1 TATATTTTTCTTATATTCATAAATGTA
*
17854138 T-TATTTTTTTTATATTCATATTAATGTA
1 TATATTTTTCTTATATTCATA--AATGTA
17854166 TATATT
1 TATATT
17854172 ATGTGCCTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
26 17 0.61
27 1 0.04
28 6 0.21
29 4 0.14
ACGTcount: A:0.28, C:0.05, G:0.07, T:0.61
Consensus pattern (27 bp):
TATATTTTTCTTATATTCATAAATGTA
Found at i:17854367 original size:15 final size:15
Alignment explanation
Indices: 17854344--17854376 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
17854334 GTGATATGTC
17854344 ATTGATGTATTTATT
1 ATTGATGTATTTATT
*
17854359 ATTGTTGTATTTATT
1 ATTGATGTATTTATT
17854374 ATT
1 ATT
17854377 TTAGCATTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (15 bp):
ATTGATGTATTTATT
Found at i:17854761 original size:98 final size:98
Alignment explanation
Indices: 17854652--17854848 Score: 385
Period size: 98 Copynumber: 2.0 Consensus size: 98
17854642 TTAAAAATAA
17854652 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
17854717 TTAAATCTTGGATAAGTGGATGTTTTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
17854750 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
17854815 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
17854848 T
1 T
17854849 TTTATTGTAC
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
98 98 1.00
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:17856199 original size:85 final size:85
Alignment explanation
Indices: 17856056--17856229 Score: 278
Period size: 85 Copynumber: 2.0 Consensus size: 85
17856046 ACCTAAACCT
* *
17856056 GAGAAGAAAACGACAGCAGTAATAACTACTGATGGTGGTCCATCCAAGAGCAGATCAGGATATAC
1 GAGAAGAAAACGACAGCAGTAATAACTACTGATGGTGGTCCATCCAAGAGAAGATCAGGATATAA
17856121 TGAAGATATTAGAGTAATAG
66 TGAAGATATTAGAGTAATAG
* * *
17856141 GAGAAGAACAA-GGCAGCGGTAGTAACTACTGATGGTGGTCCATCCAAGAGAAGATCAGGATATA
1 GAGAAGAA-AACGACAGCAGTAATAACTACTGATGGTGGTCCATCCAAGAGAAGATCAGGATATA
*
17856205 ATGAAGATATTGGAGTAATAG
65 ATGAAGATATTAGAGTAATAG
17856226 GAGA
1 GAGA
17856230 TGGGTCGAGG
Statistics
Matches: 82, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
85 80 0.98
86 2 0.02
ACGTcount: A:0.40, C:0.13, G:0.28, T:0.20
Consensus pattern (85 bp):
GAGAAGAAAACGACAGCAGTAATAACTACTGATGGTGGTCCATCCAAGAGAAGATCAGGATATAA
TGAAGATATTAGAGTAATAG
Found at i:17858221 original size:20 final size:20
Alignment explanation
Indices: 17858196--17858233 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
17858186 AAAGCTATTC
*
17858196 AGAGGCACCGTAGTGCAAAT
1 AGAGGCACCGAAGTGCAAAT
*
17858216 AGAGGCATCGAAGTGCAA
1 AGAGGCACCGAAGTGCAA
17858234 TACTATACAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.18, G:0.32, T:0.13
Consensus pattern (20 bp):
AGAGGCACCGAAGTGCAAAT
Found at i:17873106 original size:25 final size:25
Alignment explanation
Indices: 17873071--17873162 Score: 175
Period size: 25 Copynumber: 3.7 Consensus size: 25
17873061 CAGTCCTATT
*
17873071 TTTACAACTCGTGTGAGCATACTGA
1 TTTACAGCTCGTGTGAGCATACTGA
17873096 TTTACAGCTCGTGTGAGCATACTGA
1 TTTACAGCTCGTGTGAGCATACTGA
17873121 TTTACAGCTCGTGTGAGCATACTGA
1 TTTACAGCTCGTGTGAGCATACTGA
17873146 TTTACAGCTCGTGTGAG
1 TTTACAGCTCGTGTGAG
17873163 TATTCATGTA
Statistics
Matches: 66, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
25 66 1.00
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.33
Consensus pattern (25 bp):
TTTACAGCTCGTGTGAGCATACTGA
Found at i:17873654 original size:47 final size:48
Alignment explanation
Indices: 17873573--17873666 Score: 136
Period size: 47 Copynumber: 2.0 Consensus size: 48
17873563 TTAGATGCTT
* * *
17873573 ACTCTGTGTTATTTTTTCGTGTTTTATAGCGAATCAGAAGCTTGTTCA
1 ACTCTGTGTTATTTTTTCATGTTTGATAGCGAATCAGAAGCTCGTTCA
* *
17873621 ACTCTGTTTTA-TTTTTCATGTTTGATAGTGAATCAGAAGCTCGTTC
1 ACTCTGTGTTATTTTTTCATGTTTGATAGCGAATCAGAAGCTCGTTC
17873667 GGGTTGGAAG
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
47 31 0.76
48 10 0.24
ACGTcount: A:0.21, C:0.15, G:0.18, T:0.46
Consensus pattern (48 bp):
ACTCTGTGTTATTTTTTCATGTTTGATAGCGAATCAGAAGCTCGTTCA
Found at i:17874371 original size:30 final size:30
Alignment explanation
Indices: 17874337--17874401 Score: 103
Period size: 30 Copynumber: 2.2 Consensus size: 30
17874327 GTCTCACCCG
* *
17874337 TGTGTGACACACGGCCAGGCAACATGGCCA
1 TGTGTGACACACAGCCAGGCAACACGGCCA
*
17874367 TGTGTGACACACAGCCAGGCAACACGGCCG
1 TGTGTGACACACAGCCAGGCAACACGGCCA
17874397 TGTGT
1 TGTGT
17874402 CCCCTATAGC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.25, C:0.29, G:0.31, T:0.15
Consensus pattern (30 bp):
TGTGTGACACACAGCCAGGCAACACGGCCA
Found at i:17880439 original size:27 final size:28
Alignment explanation
Indices: 17880408--17880467 Score: 81
Period size: 27 Copynumber: 2.2 Consensus size: 28
17880398 TTGAATTTAG
17880408 TAAACAAC-GGATAGTAC-TCTGGGACAA
1 TAAACAACAGGATAGTACATC-GGGACAA
*
17880435 TAAAC-ACAGGATAGTTCATCGGGACAA
1 TAAACAACAGGATAGTACATCGGGACAA
17880462 TAAACA
1 TAAACA
17880468 CAAGAGAGCC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
26 2 0.07
27 25 0.86
28 2 0.07
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.18
Consensus pattern (28 bp):
TAAACAACAGGATAGTACATCGGGACAA
Found at i:17880484 original size:27 final size:27
Alignment explanation
Indices: 17880428--17880502 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
17880418 ATAGTACTCT
* * ** *
17880428 GGGACAATAAACACAGGATAGTTCATC
1 GGGACAATAAACACAAGAGAGCCCACC
17880455 GGGACAATAAACACAAGAGAGCCCACC
1 GGGACAATAAACACAAGAGAGCCCACC
* *
17880482 GGGACAGTAAACACGAGAGAG
1 GGGACAATAAACACAAGAGAG
17880503 TTCGCCAATA
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.43, C:0.21, G:0.27, T:0.09
Consensus pattern (27 bp):
GGGACAATAAACACAAGAGAGCCCACC
Found at i:17883863 original size:29 final size:27
Alignment explanation
Indices: 17883845--17883914 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
17883835 ATATTAAGTC
17883845 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
*
17883872 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
*
17883900 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
17883915 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:17883908 original size:28 final size:28
Alignment explanation
Indices: 17883845--17883942 Score: 135
Period size: 28 Copynumber: 3.5 Consensus size: 28
17883835 ATATTAAGTC
*
17883845 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
17883872 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
17883900 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
17883929 CGCACACTTAGTGC
1 CGCACACTTAGTGC
17883943 CAATCTCATG
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.34
28 23 0.36
29 19 0.30
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:17885616 original size:25 final size:25
Alignment explanation
Indices: 17885555--17885618 Score: 65
Period size: 25 Copynumber: 2.6 Consensus size: 25
17885545 AACCTATTTT
* * *
17885555 ACAGCTTGCGTGAGCATTTACAGTT
1 ACAGCTTGTGTGAGCATTTACACTC
** * *
17885580 ACAGCTCATGTGAGCTTTTACCCTC
1 ACAGCTTGTGTGAGCATTTACACTC
17885605 ACAGCTTGTGTGAG
1 ACAGCTTGTGTGAG
17885619 AATTGTTCCT
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.22, C:0.23, G:0.23, T:0.31
Consensus pattern (25 bp):
ACAGCTTGTGTGAGCATTTACACTC
Found at i:17885697 original size:13 final size:13
Alignment explanation
Indices: 17885666--17885713 Score: 60
Period size: 13 Copynumber: 3.5 Consensus size: 13
17885656 TCATCAGGTG
17885666 GAAATGGATATATAT
1 GAAATGG-T-TATAT
*
17885681 GAAATGGTTATAC
1 GAAATGGTTATAT
*
17885694 GAAATGGATATAT
1 GAAATGGTTATAT
17885707 GAAATGG
1 GAAATGG
17885714 ACATTTGAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
13 22 0.73
14 1 0.03
15 7 0.23
ACGTcount: A:0.44, C:0.02, G:0.25, T:0.29
Consensus pattern (13 bp):
GAAATGGTTATAT
Found at i:17885714 original size:13 final size:13
Alignment explanation
Indices: 17885675--17885738 Score: 76
Period size: 13 Copynumber: 4.9 Consensus size: 13
17885665 GGAAATGGAT
17885675 ATATATGAAATGG
1 ATATATGAAATGG
* *
17885688 TTATACGAAATGG
1 ATATATGAAATGG
17885701 ATATATGAAATGG
1 ATATATGAAATGG
* *
17885714 ACATTTGAAATGG
1 ATATATGAAATGG
17885727 ATACT-TGAAATG
1 ATA-TATGAAATG
17885739 AAAATGTGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
13 42 0.98
14 1 0.02
ACGTcount: A:0.42, C:0.05, G:0.22, T:0.31
Consensus pattern (13 bp):
ATATATGAAATGG
Found at i:17885723 original size:26 final size:26
Alignment explanation
Indices: 17885666--17885738 Score: 76
Period size: 26 Copynumber: 2.7 Consensus size: 26
17885656 TCATCAGGTG
**
17885666 GAAATGGATATATATGAAATGGTTATAC
1 GAAATGG--ATATATGAAATGGACATAC
**
17885694 GAAATGGATATATGAAATGGACATTT
1 GAAATGGATATATGAAATGGACATAC
17885720 GAAATGGATACT-TGAAATG
1 GAAATGGATA-TATGAAATG
17885739 AAAATGTGAA
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
26 32 0.80
27 1 0.03
28 7 0.17
ACGTcount: A:0.42, C:0.04, G:0.23, T:0.30
Consensus pattern (26 bp):
GAAATGGATATATGAAATGGACATAC
Found at i:17885748 original size:26 final size:26
Alignment explanation
Indices: 17885694--17885749 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
17885684 ATGGTTATAC
* * *
17885694 GAAATGGATATATGAAATGGACATTT
1 GAAATGGATATATGAAATGAAAATGT
17885720 GAAATGGATACT-TGAAATGAAAATGT
1 GAAATGGATA-TATGAAATGAAAATGT
17885746 GAAA
1 GAAA
17885750 AGTTAAATGG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.46, C:0.04, G:0.23, T:0.27
Consensus pattern (26 bp):
GAAATGGATATATGAAATGAAAATGT
Found at i:17900617 original size:17 final size:17
Alignment explanation
Indices: 17900595--17900635 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
17900585 TTTACAGAAG
*
17900595 AAAATAATAAATAA-ATA
1 AAAATAATAAA-AATAGA
17900612 AAAATAATAAAAATAGA
1 AAAATAATAAAAATAGA
17900629 AAAATAA
1 AAAATAA
17900636 AAACCCAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 2 0.09
17 20 0.91
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (17 bp):
AAAATAATAAAAATAGA
Found at i:17900622 original size:9 final size:9
Alignment explanation
Indices: 17900595--17900635 Score: 50
Period size: 8 Copynumber: 4.8 Consensus size: 9
17900585 TTTACAGAAG
17900595 AAAATAATA
1 AAAATAATA
*
17900604 AATA-AATA
1 AAAATAATA
17900612 AAAATAATA
1 AAAATAATA
*
17900621 AAAAT-AGA
1 AAAATAATA
17900629 AAAATAA
1 AAAATAA
17900636 AAACCCAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
8 14 0.52
9 13 0.48
ACGTcount: A:0.78, C:0.00, G:0.02, T:0.20
Consensus pattern (9 bp):
AAAATAATA
Found at i:17901367 original size:50 final size:50
Alignment explanation
Indices: 17901292--17902058 Score: 346
Period size: 50 Copynumber: 15.3 Consensus size: 50
17901282 AAGATTTGCT
* * ** * * *
17901292 GTTGTGGCTTCAATCTGTTCCACTGCACTGCTTGGGAAGTAAGATTCACT
1 GTTGTGGCTTTAATCTTTTTAACTGCAATGCTGGGGAAGTAAGATTCACC
* * * *
17901342 GTTGTAGCTTTAATCTTTTTAACTGCAATG-TCGGGG-AGATAGGATTTGTAAC
1 GTTGTGGCTTTAATCTTTTTAACTGCAATGCT-GGGGAAG-TAAGA-TT-CACC
* ** * ** * * * *
17901394 -TCGTAACTTTAATCTGTTTAACTGTGATG-TCGAGGAAGCAAGGTTCGCC
1 GTTGTGGCTTTAATCTTTTTAACTGCAATGCT-GGGGAAGTAAGATTCACC
* * * * ** * * *
17901443 ATTATGGCTTCAATCTGTTCCACTACACTGCCT-GGGAAGTAAGATTCACT
1 GTTGTGGCTTTAATCTTTTTAACTGCAATG-CTGGGGAAGTAAGATTCACC
* * **
17901493 GTTGTAGCTTTAATCTTTCTAACTGCAA--CATCGGGGAAGCGAGATTCACC
1 GTTGTGGCTTTAATCTTTTTAACTGCAATGC-T-GGGGAAGTAAGATTCACC
* * * * ** * * * *
17901543 GTTGTGGCGTTAATCTGTTTCATTGCACCGCTTGAGAGGTAAGATTCACT
1 GTTGTGGCTTTAATCTTTTTAACTGCAATGCTGGGGAAGTAAGATTCACC
* * * * **
17901593 GTTGTAGCTTTAATCTTTTTAACTGCAATG-TCGAGGAAGCAAGGTTTGCC
1 GTTGTGGCTTTAATCTTTTTAACTGCAATGCT-GGGGAAGTAAGATTCACC
* * ** ** * * * *
17901643 ATCGTGGCTTTAATCTGCTCCACTGC-ATCGCTAGAGATGTAAGATTCACT
1 GTTGTGGCTTTAATCTTTTTAACTGCAAT-GCTGGGGAAGTAAGATTCACC
* * *
17901693 GTTGTGGCTTCAATCTTTTTAACTGCAATG-TCGGGGAAGCAAGATTCAAC
1 GTTGTGGCTTTAATCTTTTTAACTGCAATGCT-GGGGAAGTAAGATTCACC
* * ** * * **
17901743 GATGTGCCTTTAAT-TTGTTCCACTGTACCA-CCTGGGGAA-TAAGATTTGCC
1 GTTGTGGCTTTAATCTT-TTTAACTG--CAATGCTGGGGAAGTAAGATTCACC
* * **
17901793 GTTATAGCTTTAATCTTTTTAACTGCAATG-TCGGGGAAGCGAGATTCACC
1 GTTGTGGCTTTAATCTTTTTAACTGCAATGCT-GGGGAAGTAAGATTCACC
* ** ** * * *
17901843 GATGTGGCTTTAATCTGCTCCACTGC-ATCGCTAGAGAAGTAAGATTCGCC
1 GTTGTGGCTTTAATCTTTTTAACTGCAAT-GCTGGGGAAGTAAGATTCACC
* * * *
17901893 GCTGTGGCTTTAATCTTTTTAACTACAATG-TCAGGGAAGCAAGATTCACC
1 GTTGTGGCTTTAATCTTTTTAACTGCAATGCT-GGGGAAGTAAGATTCACC
* ** ** ** * *
17901943 GATGTGGCTTTAATCTACTCCACTGC-ATCGCCAGGGAGGTAAGATTCACT
1 GTTGTGGCTTTAATCTTTTTAACTGCAAT-GCTGGGGAAGTAAGATTCACC
* *
17901993 GTTGTAGCTTTAATCTTTTTAACTGCAATG-TCGGGGAAGTGAGATTCACC
1 GTTGTGGCTTTAATCTTTTTAACTGCAATGCT-GGGGAAGTAAGATTCACC
*
17902043 GATGTGGCTTTAATCT
1 GTTGTGGCTTTAATCT
17902059 GCTCCACTGC
Statistics
Matches: 506, Mismatches: 177, Indels: 68
0.67 0.24 0.09
Matches are distributed among these distances:
47 1 0.00
48 4 0.01
49 21 0.04
50 422 0.83
51 50 0.10
52 8 0.02
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (50 bp):
GTTGTGGCTTTAATCTTTTTAACTGCAATGCTGGGGAAGTAAGATTCACC
Found at i:17901531 original size:100 final size:99
Alignment explanation
Indices: 17901400--17902089 Score: 701
Period size: 100 Copynumber: 6.9 Consensus size: 99
17901390 TAACTCGTAA
* ** * * * * * *
17901400 CTTTAATCTGTTTAACTGTGATGTCGAGGAAGCAAGGTTCGCCATTATGGCTTCAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCA-TGTGGCTTTAATCTGCTCCA
* *
17901465 CTACACTGCCT-GGGAAGTAAGATTCACTGTTGTAG
65 CTGCA-TGCCTAGAGAAGTAAGATTCACTGTTGTAG
* ** * * * * *
17901500 CTTTAATCTTTCTAACTGCAACATCGGGGAAGCGAGATTCACCGTTGTGGCGTTAATCTGTTTCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACC-ATGTGGCTTTAATCTGCTCCA
* * * *
17901565 TTGCA-CCGCTTGAGAGGTAAGATTCACTGTTGTAG
65 CTGCATGC-CTAGAGAAGTAAGATTCACTGTTGTAG
* * **
17901600 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGGTTTGCCATCGTGGCTTTAATCTGCTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCAT-GTGGCTTTAATCTGCTCCA
* *
17901665 CTGCAT-CGCTAGAGATGTAAGATTCACTGTTGTGG
65 CTGCATGC-CTAGAGAAGTAAGATTCACTGTTGTAG
* * * * *
17901700 CTTCAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCAACGATGTGCCTTTAATTTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTC-ACCATGTGGCTTTAATCTGCTCCA
* ** * * ** * *
17901765 CTGTACCACCTGGGGAA-TAAGATTTGCCGTTATAG
65 CTGCA-TGCCTAGAGAAGTAAGATTCACTGTTGTAG
*
17901800 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGAGATTCACCGATGTGGCTTTAATCTGCTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACC-ATGTGGCTTTAATCTGCTCCA
* * * *
17901865 CTGCAT-CGCTAGAGAAGTAAGATTCGCCGCTGTGG
65 CTGCATGC-CTAGAGAAGTAAGATTCACTGTTGTAG
* * *
17901900 CTTTAATCTTTTTAACTACAATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTACTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACC-ATGTGGCTTTAATCTGCTCCA
* *
17901965 CTGCATCGCC-AGGGAGGTAAGATTCACTGTTGTAG
65 CTGCAT-GCCTAGAGAAGTAAGATTCACTGTTGTAG
**
17902000 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGTGAGATTCACCGATGTGGCTTTAATCTGCTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACC-ATGTGGCTTTAATCTGCTCCA
*
17902065 CTGCAT-CTCCAGAGAAGTAAGATTC
65 CTGCATGC-CTAGAGAAGTAAGATTC
17902090 TTGATTTCAC
Statistics
Matches: 489, Mismatches: 86, Indels: 30
0.81 0.14 0.05
Matches are distributed among these distances:
98 3 0.01
99 12 0.02
100 463 0.95
101 9 0.02
102 2 0.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (99 bp):
CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCATGTGGCTTTAATCTGCTCCAC
TGCATGCCTAGAGAAGTAAGATTCACTGTTGTAG
Found at i:17901638 original size:200 final size:199
Alignment explanation
Indices: 17901400--17902089 Score: 814
Period size: 200 Copynumber: 3.5 Consensus size: 199
17901390 TAACTCGTAA
* ** * * *
17901400 CTTTAATCTGTTTAACTGTGATGTCGAGGAAGCAAGGTTCGCCATTATGGCTTCAATCTGTTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGGTTCGCCATTGTGGCTTTAATCTGCTCCA
* * * * **
17901465 CTACA-CTGCCT-GGGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTCTAACTGCAACATCGGG
66 CTGCATC-G-CTAGAGAAGTAAGATTCACTGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGG
* * * * * *
17901528 GAAGCGAGATTCACCGTTGTGGCGTTAATCTGTTTCATTGCACCGCTTGAGAGGTAAGATTCACT
129 GAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTG-GAGGTAAGATTCACT
17901593 GTTGTAG
193 GTTGTAG
* *
17901600 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGGTTTGCCATCGTGGCTTTAATCTGCTCCA
1 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGGTTCGCCATTGTGGCTTTAATCTGCTCCA
* *
17901665 CTGCATCGCTAGAGATGTAAGATTCACTGTTGTGGCTTCAATCTTTTTAACTGCAATGTCGGGGA
66 CTGCATCGCTAGAGAAGTAAGATTCACTGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGA
* * * * * ** *
17901730 AGCAAGATTCAACGATGTGCCTTTAATTTGTTCCACTGTACCACCTGG-GGAATAAGATTTGCCG
131 AGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAGG--TAAGATTCACTG
*
17901794 TTATAG
194 TTGTAG
* * * *
17901800 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGAGATTCACCGA-TGTGGCTTTAATCTGCTCC
1 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGGTTCGCC-ATTGTGGCTTTAATCTGCTCC
* * * * *
17901864 ACTGCATCGCTAGAGAAGTAAGATTCGCCGCTGTGGCTTTAATCTTTTTAACTACAATGTCAGGG
65 ACTGCATCGCTAGAGAAGTAAGATTCACTGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGG
** * *
17901929 AAGCAAGATTCACCGATGTGGCTTTAATCTACTCCACTGCATCGCCAGGGAGGTAAGATTCACTG
130 AAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCC-TGGAGGTAAGATTCACTG
17901994 TTGTAG
194 TTGTAG
* ** * *
17902000 CTTTAATCTTTTTAACTGCAATGTCGGGGAAGTGAGATTCACCGA-TGTGGCTTTAATCTGCTCC
1 CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGGTTCGCC-ATTGTGGCTTTAATCTGCTCC
* *
17902064 ACTGCATCTCCAGAGAAGTAAGATTC
65 ACTGCATCGCTAGAGAAGTAAGATTC
17902090 TTGATTTCAC
Statistics
Matches: 423, Mismatches: 60, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
198 2 0.00
199 3 0.01
200 412 0.97
201 4 0.01
202 2 0.00
ACGTcount: A:0.24, C:0.21, G:0.23, T:0.32
Consensus pattern (199 bp):
CTTTAATCTTTTTAACTGCAATGTCGAGGAAGCAAGGTTCGCCATTGTGGCTTTAATCTGCTCCA
CTGCATCGCTAGAGAAGTAAGATTCACTGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGA
AGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCTGGAGGTAAGATTCACTGTT
GTAG
Found at i:17904278 original size:28 final size:27
Alignment explanation
Indices: 17904241--17904347 Score: 101
Period size: 27 Copynumber: 3.9 Consensus size: 27
17904231 TGGCCTCTCC
* *
17904241 TTTTCTTTTTCTCCTTTTTTATTTTGAT
1 TTTTCTTTTTTTTC-TTTTTATTTTGAT
** * *
17904269 TTTTCCTTTTTTTGATTTTGACTTTGAT
1 TTTT-CTTTTTTTTCTTTTTATTTTGAT
17904297 TTTTCTTTTTTTTCTTTTTATTTTGA-
1 TTTTCTTTTTTTTCTTTTTATTTTGAT
*
17904323 TTTTCATTTTGATTT-TTTTTATTTT
1 TTTTC-TTTT-TTTTCTTTTTATTTT
17904348 TTTTATTTTT
Statistics
Matches: 66, Mismatches: 10, Indels: 7
0.80 0.12 0.08
Matches are distributed among these distances:
26 5 0.08
27 32 0.48
28 22 0.33
29 7 0.11
ACGTcount: A:0.09, C:0.09, G:0.06, T:0.76
Consensus pattern (27 bp):
TTTTCTTTTTTTTCTTTTTATTTTGAT
Found at i:17904287 original size:27 final size:27
Alignment explanation
Indices: 17904257--17904326 Score: 95
Period size: 28 Copynumber: 2.6 Consensus size: 27
17904247 TTTTCTCCTT
*
17904257 TTTTATTTTGATTTTTCCTTTTTTTGA
1 TTTTATTTTGATTTTTCCTTTTTTTCA
* * *
17904284 TTTTGACTTTGATTTTTCTTTTTTTTCT
1 TTTT-ATTTTGATTTTTCCTTTTTTTCA
17904312 TTTTATTTTGATTTT
1 TTTTATTTTGATTTT
17904327 CATTTTGATT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 14 0.38
28 23 0.62
ACGTcount: A:0.10, C:0.07, G:0.07, T:0.76
Consensus pattern (27 bp):
TTTTATTTTGATTTTTCCTTTTTTTCA
Found at i:17904326 original size:12 final size:12
Alignment explanation
Indices: 17904256--17904339 Score: 54
Period size: 12 Copynumber: 7.4 Consensus size: 12
17904246 TTTTTCTCCT
17904256 TTTTTATTTTGA
1 TTTTTATTTTGA
**
17904268 TTTTTCCTTT--
1 TTTTTATTTTGA
*
17904278 TTTTGATTTTGA
1 TTTTTATTTTGA
* *
17904290 CTTTGATTTT--
1 TTTTTATTTTGA
*
17904300 TCTTTT-TTTT-C
1 T-TTTTATTTTGA
17904311 TTTTTATTTTGA
1 TTTTTATTTTGA
*
17904323 TTTTCATTTTGA
1 TTTTTATTTTGA
17904335 TTTTT
1 TTTTT
17904340 TTTATTTTTT
Statistics
Matches: 55, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
10 15 0.27
11 8 0.15
12 32 0.58
ACGTcount: A:0.11, C:0.07, G:0.07, T:0.75
Consensus pattern (12 bp):
TTTTTATTTTGA
Found at i:17904332 original size:33 final size:34
Alignment explanation
Indices: 17904261--17904348 Score: 99
Period size: 33 Copynumber: 2.6 Consensus size: 34
17904251 CTCCTTTTTT
* *
17904261 ATTTTGATTTTTCCTT-TTTTTGATTTTGACTTTG
1 ATTTTGATTTTT-TTTATTTTTGATTTTGACTTTC
** * *
17904295 ATTTTTCTTTTTTTTCTTTTT-ATTTTGATTTTC
1 ATTTTGATTTTTTTTATTTTTGATTTTGACTTTC
17904328 ATTTTGATTTTTTTTATTTTT
1 ATTTTGATTTTTTTTATTTTT
17904349 TTTATTTTTG
Statistics
Matches: 45, Mismatches: 8, Indels: 3
0.80 0.14 0.05
Matches are distributed among these distances:
33 30 0.67
34 15 0.33
ACGTcount: A:0.11, C:0.07, G:0.07, T:0.75
Consensus pattern (34 bp):
ATTTTGATTTTTTTTATTTTTGATTTTGACTTTC
Found at i:17904334 original size:39 final size:36
Alignment explanation
Indices: 17904278--17904356 Score: 104
Period size: 39 Copynumber: 2.1 Consensus size: 36
17904268 TTTTTCCTTT
* *
17904278 TTTTGATTTTGACTTTGATTTTTCTTTTTTTTCTTTTTA
1 TTTTGATTTTCACTTTGA-TTTT-TTTTATTT-TTTTTA
*
17904317 TTTTGATTTTCATTTTGATTTTTTTTATTTTTTTTA
1 TTTTGATTTTCACTTTGATTTTTTTTATTTTTTTTA
17904353 TTTT
1 TTTT
17904357 TGGATTGGAT
Statistics
Matches: 37, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
36 10 0.27
37 7 0.19
38 4 0.11
39 16 0.43
ACGTcount: A:0.11, C:0.05, G:0.06, T:0.77
Consensus pattern (36 bp):
TTTTGATTTTCACTTTGATTTTTTTTATTTTTTTTA
Found at i:17904347 original size:8 final size:9
Alignment explanation
Indices: 17904296--17904357 Score: 52
Period size: 9 Copynumber: 6.2 Consensus size: 9
17904286 TTGACTTTGA
*
17904296 TTTTTCTTT
1 TTTTTATTT
*
17904305 TTTTTCTTTT
1 TTTTT-ATTT
17904315 TATTTTGATTT
1 T-TTTT-ATTT
17904326 TCATTTTGATTT
1 T--TTTT-ATTT
17904338 TTTTTATTT
1 TTTTTATTT
17904347 TTTTTATTT
1 TTTTTATTT
17904356 TT
1 TT
17904358 GGATTGGATC
Statistics
Matches: 47, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
9 20 0.43
10 8 0.17
11 8 0.17
12 11 0.23
ACGTcount: A:0.10, C:0.05, G:0.03, T:0.82
Consensus pattern (9 bp):
TTTTTATTT
Found at i:17909826 original size:16 final size:16
Alignment explanation
Indices: 17909805--17909837 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
17909795 TTTAAAAGAT
17909805 TTGAAA-GAAAACTCAA
1 TTGAAATGAAAA-TCAA
17909821 TTGAAATGAAAATCAA
1 TTGAAATGAAAATCAA
17909837 T
1 T
17909838 GTCGAAGGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.55, C:0.09, G:0.12, T:0.24
Consensus pattern (16 bp):
TTGAAATGAAAATCAA
Found at i:17911822 original size:25 final size:24
Alignment explanation
Indices: 17911794--17911860 Score: 62
Period size: 27 Copynumber: 2.6 Consensus size: 24
17911784 CGATATATGG
17911794 CTCTCTGGAGCTTCCCGATTAAAGA
1 CTCTCT-GAGCTTCCCGATTAAAGA
* * *
17911819 CTCTTTCATGAGCTTTCCGATTAATGG
1 CTC--TC-TGAGCTTCCCGATTAAAGA
17911846 CTCTCTAGAGCTTCC
1 CTCTCT-GAGCTTCC
17911861 TGATATTGGC
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
24 1 0.03
25 12 0.35
27 20 0.59
28 1 0.03
ACGTcount: A:0.19, C:0.28, G:0.18, T:0.34
Consensus pattern (24 bp):
CTCTCTGAGCTTCCCGATTAAAGA
Found at i:17911919 original size:25 final size:25
Alignment explanation
Indices: 17911890--17911947 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
17911880 CTTCTCGATT
** *
17911890 ATGGCTTTTATGAGCTTCCTGTTAC
1 ATGGCTTACATGAGCTTCCCGTTAC
* *
17911915 ATGGCTCACATGAGCTTCCCGTTAT
1 ATGGCTTACATGAGCTTCCCGTTAC
17911940 ATGGCTTA
1 ATGGCTTA
17911948 AAAGAGAGCT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.19, C:0.22, G:0.21, T:0.38
Consensus pattern (25 bp):
ATGGCTTACATGAGCTTCCCGTTAC
Found at i:17912601 original size:2 final size:2
Alignment explanation
Indices: 17912596--17912622 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
17912586 TGATATATAA
17912596 GT GT GT GT GT GT GT GT GT GT GT GT GT G
1 GT GT GT GT GT GT GT GT GT GT GT GT GT G
17912623 GCTTTATCAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.52, T:0.48
Consensus pattern (2 bp):
GT
Found at i:17913667 original size:25 final size:25
Alignment explanation
Indices: 17913633--17913702 Score: 106
Period size: 25 Copynumber: 2.8 Consensus size: 25
17913623 CAGGCCCATT
17913633 TTCACAGCTCGTGTGAGCATTCTA-A
1 TTCACAGCTCGTGTGAGCATTC-AGA
*
17913658 TTCACAGCTCGTGTGTGCATTCAGA
1 TTCACAGCTCGTGTGAGCATTCAGA
*
17913683 TTTACAGCTCGTGTGAGCAT
1 TTCACAGCTCGTGTGAGCAT
17913703 ATGTAACGCC
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
24 1 0.02
25 40 0.98
ACGTcount: A:0.21, C:0.23, G:0.23, T:0.33
Consensus pattern (25 bp):
TTCACAGCTCGTGTGAGCATTCAGA
Found at i:17915325 original size:17 final size:18
Alignment explanation
Indices: 17915303--17915337 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
17915293 ATTTGGGTCA
17915303 TGTGGG-CCACACGGGTG
1 TGTGGGCCCACACGGGTG
17915320 TGTGGGCCCACACGGGTG
1 TGTGGGCCCACACGGGTG
17915338 AACATTATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.11, C:0.26, G:0.46, T:0.17
Consensus pattern (18 bp):
TGTGGGCCCACACGGGTG
Found at i:17916110 original size:15 final size:16
Alignment explanation
Indices: 17916083--17916113 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
17916073 TTAAGTTAAA
17916083 GAAAGTAAATGAAATG
1 GAAAGTAAATGAAATG
17916099 GAAAGT-AATGAAATG
1 GAAAGTAAATGAAATG
17916114 CAAATGAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.55, C:0.00, G:0.26, T:0.19
Consensus pattern (16 bp):
GAAAGTAAATGAAATG
Found at i:17918892 original size:138 final size:138
Alignment explanation
Indices: 17918658--17918973 Score: 413
Period size: 138 Copynumber: 2.3 Consensus size: 138
17918648 GCTCCTAGTT
* * * *
17918658 GAAGAGCCGTAGCCTCCAAAATAGTTAGTGAAAGCAAAGCTCCCAATTGTAATATCAAGGCTCAC
1 GAAGAGCCGCAGCCTCCAAAATAGTTAGCGAGAGCAAAGCTCCCAATTGTAAGATCAAGGCTCAC
* * * * *
17918723 AGGTGAAGAGTCGCAGCCTCCAAAACAGTTAGCGA-AAGCAAAGCTCCCAACTGTAATATCAAGG
66 AGGCGAAGAGCCACAGCCTCCAAAACAGTTAGCGAGAA-CAAAGCTCCCAACAGTAATATCAAAG
17918787 CTC-CAAAGC
130 CTCAC-AAGC
* * * * *
17918796 GAAGAGCCGCAACCTCCAAAATAGTTAACGAGAGCAAAGCTCCTAATTGTAAGATCGAGGCTCAT
1 GAAGAGCCGCAGCCTCCAAAATAGTTAGCGAGAGCAAAGCTCCCAATTGTAAGATCAAGGCTCAC
* * *
17918861 AGGCGAAGAGCCACAGCCTCCAAAATAGTTAGCGAGAACAAAGCTTCCAGCAGTAATATCAAAGC
66 AGGCGAAGAGCCACAGCCTCCAAAACAGTTAGCGAGAACAAAGCTCCCAACAGTAATATCAAAGC
17918926 TCACAAGC
131 TCACAAGC
* *
17918934 AAAGAGCCGCGGCCTCCAAAATAGTTAGC-ACGAGCAAAGC
1 GAAGAGCCGCAGCCTCCAAAATAGTTAGCGA-GAGCAAAGC
17918974 AACTAGGTGT
Statistics
Matches: 154, Mismatches: 21, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
137 1 0.01
138 150 0.97
139 3 0.02
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.16
Consensus pattern (138 bp):
GAAGAGCCGCAGCCTCCAAAATAGTTAGCGAGAGCAAAGCTCCCAATTGTAAGATCAAGGCTCAC
AGGCGAAGAGCCACAGCCTCCAAAACAGTTAGCGAGAACAAAGCTCCCAACAGTAATATCAAAGC
TCACAAGC
Found at i:17918989 original size:69 final size:69
Alignment explanation
Indices: 17918658--17918973 Score: 375
Period size: 69 Copynumber: 4.6 Consensus size: 69
17918648 GCTCCTAGTT
* * * *
17918658 GAAGAGCCGTAGCCTCCAAAATAGTTAGTGAAAGCAAAGCTCCCAATTGTAATATCAAGGCTCAC
1 GAAGAGCCGCAGCCTCCAAAATAGTTAGCGAGAGCAAAGCTCCCAACTGTAATATCAAGGCTCAC
* *
17918723 AGGT
66 AAGC
* * *
17918727 GAAGAGTCGCAGCCTCCAAAACAGTTAGCGAAAGCAAAGCTCCCAACTGTAATATCAAGGCTC-C
1 GAAGAGCCGCAGCCTCCAAAATAGTTAGCGAGAGCAAAGCTCCCAACTGTAATATCAAGGCTCAC
17918791 AAAGC
66 -AAGC
* * * * * * *
17918796 GAAGAGCCGCAACCTCCAAAATAGTTAACGAGAGCAAAGCTCCTAATTGTAAGATCGAGGCTCAT
1 GAAGAGCCGCAGCCTCCAAAATAGTTAGCGAGAGCAAAGCTCCCAACTGTAATATCAAGGCTCAC
*
17918861 AGGC
66 AAGC
* * * * * *
17918865 GAAGAGCCACAGCCTCCAAAATAGTTAGCGAGAACAAAGCTTCCAGCAGTAATATCAAAGCTCAC
1 GAAGAGCCGCAGCCTCCAAAATAGTTAGCGAGAGCAAAGCTCCCAACTGTAATATCAAGGCTCAC
17918930 AAGC
66 AAGC
* *
17918934 AAAGAGCCGCGGCCTCCAAAATAGTTAGC-ACGAGCAAAGC
1 GAAGAGCCGCAGCCTCCAAAATAGTTAGCGA-GAGCAAAGC
17918974 AACTAGGTGT
Statistics
Matches: 208, Mismatches: 36, Indels: 6
0.83 0.14 0.02
Matches are distributed among these distances:
68 2 0.01
69 206 0.99
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.16
Consensus pattern (69 bp):
GAAGAGCCGCAGCCTCCAAAATAGTTAGCGAGAGCAAAGCTCCCAACTGTAATATCAAGGCTCAC
AAGC
Found at i:17919114 original size:58 final size:58
Alignment explanation
Indices: 17919019--17919137 Score: 175
Period size: 58 Copynumber: 2.1 Consensus size: 58
17919009 GCAGTATCAA
* * *
17919019 TATAGAATAGATCGCGAATTCATATTCCCAGCTTATAATTTTGAGAAAAATATCTAAG
1 TATAAAATAGATCACGAATTCATATTCCCAGCTTATAATTTCGAGAAAAATATCTAAG
* ** *
17919077 TATAAAATAGATCACGAATTTATATTCTTAGCTTATAATTTCGAGAAAAATCTCTAAG
1 TATAAAATAGATCACGAATTCATATTCCCAGCTTATAATTTCGAGAAAAATATCTAAG
17919135 TAT
1 TAT
17919138 CAGACAGCTC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.40, C:0.13, G:0.12, T:0.35
Consensus pattern (58 bp):
TATAAAATAGATCACGAATTCATATTCCCAGCTTATAATTTCGAGAAAAATATCTAAG
Found at i:17922363 original size:17 final size:17
Alignment explanation
Indices: 17922343--17922393 Score: 52
Period size: 16 Copynumber: 3.1 Consensus size: 17
17922333 CTTTAATGAT
*
17922343 TTTTATAATTATTTAAG
1 TTTTATAATTATTTAAA
*
17922360 TTTTATGATT-TTTAAA
1 TTTTATAATTATTTAAA
* *
17922376 ATTT-TAATTATTTTAA
1 TTTTATAATTATTTAAA
17922392 TT
1 TT
17922394 ATTTTAAATA
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
15 4 0.15
16 14 0.52
17 9 0.33
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (17 bp):
TTTTATAATTATTTAAA
Found at i:17922388 original size:9 final size:9
Alignment explanation
Indices: 17922376--17922407 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
17922366 GATTTTTAAA
17922376 ATTTTAATT
1 ATTTTAATT
17922385 ATTTTAATT
1 ATTTTAATT
*
17922394 ATTTTAAAT
1 ATTTTAATT
17922403 ATTTT
1 ATTTT
17922408 TCTTATAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (9 bp):
ATTTTAATT
Found at i:17923428 original size:12 final size:12
Alignment explanation
Indices: 17923411--17923454 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
17923401 AAAGTAAATT
17923411 TAAAAAACTAAAA
1 TAAAAAA-TAAAA
* *
17923424 CAAAAATTAAAA
1 TAAAAAATAAAA
17923436 TAAAAAATAAAA
1 TAAAAAATAAAA
17923448 TAAAAAA
1 TAAAAAA
17923455 CCAAATTATA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
12 22 0.81
13 5 0.19
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.16
Consensus pattern (12 bp):
TAAAAAATAAAA
Found at i:17924491 original size:6 final size:6
Alignment explanation
Indices: 17924474--17924503 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
17924464 CCCTCCCCCG
*
17924474 TCCCTC TTCCTC TCCCTC TCCCTC TCCCTC
1 TCCCTC TCCCTC TCCCTC TCCCTC TCCCTC
17924504 GCTGCTGCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (6 bp):
TCCCTC
Found at i:17924512 original size:3 final size:3
Alignment explanation
Indices: 17924504--17924532 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
17924494 CCTCTCCCTC
17924504 GCT GCT GCT GCT GCT GCT GCT GCT GCT GC
1 GCT GCT GCT GCT GCT GCT GCT GCT GCT GC
17924533 AGATGGGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.00, C:0.34, G:0.34, T:0.31
Consensus pattern (3 bp):
GCT
Found at i:17927864 original size:16 final size:16
Alignment explanation
Indices: 17927843--17927879 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
17927833 TTAGACAAAA
*
17927843 GAATAGAGTTGTAATG
1 GAATAGAGCTGTAATG
*
17927859 GAATAGGGCTGTAATG
1 GAATAGAGCTGTAATG
17927875 GAATA
1 GAATA
17927880 AATCTATAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.38, C:0.03, G:0.32, T:0.27
Consensus pattern (16 bp):
GAATAGAGCTGTAATG
Found at i:17928862 original size:38 final size:38
Alignment explanation
Indices: 17928820--17928896 Score: 154
Period size: 38 Copynumber: 2.0 Consensus size: 38
17928810 ACACTCAAAT
17928820 GCACATGCCACTGTGAAAACTGCTAAAGAACAAAAAAA
1 GCACATGCCACTGTGAAAACTGCTAAAGAACAAAAAAA
17928858 GCACATGCCACTGTGAAAACTGCTAAAGAACAAAAAAA
1 GCACATGCCACTGTGAAAACTGCTAAAGAACAAAAAAA
17928896 G
1 G
17928897 AACAATTGTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.49, C:0.21, G:0.17, T:0.13
Consensus pattern (38 bp):
GCACATGCCACTGTGAAAACTGCTAAAGAACAAAAAAA
Found at i:17939429 original size:20 final size:20
Alignment explanation
Indices: 17939387--17939450 Score: 69
Period size: 20 Copynumber: 3.2 Consensus size: 20
17939377 AGCTAATAAC
*
17939387 GAGCTC-AATGATCTGAA-TT
1 GAGCTCGAATGAGCT-AACTT
**
17939406 GAGCTCGTGTGAGCTAACTT
1 GAGCTCGAATGAGCTAACTT
*
17939426 GAGCTCGAATGAGCTGACTT
1 GAGCTCGAATGAGCTAACTT
17939446 GAGCT
1 GAGCT
17939451 AAAGTGAGCT
Statistics
Matches: 37, Mismatches: 6, Indels: 3
0.80 0.13 0.07
Matches are distributed among these distances:
19 8 0.22
20 29 0.78
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (20 bp):
GAGCTCGAATGAGCTAACTT
Found at i:17939458 original size:20 final size:21
Alignment explanation
Indices: 17939414--17939462 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
17939404 TTGAGCTCGT
* *
17939414 GTGAGCTAACTTGAGCTCGAA
1 GTGAGCTGACTTGAGCTCAAA
17939435 -TGAGCTGACTTGAGCT-AAA
1 GTGAGCTGACTTGAGCTCAAA
17939454 GTGAGCTGA
1 GTGAGCTGA
17939463 ACCGCATGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 2 0.08
20 23 0.92
ACGTcount: A:0.29, C:0.16, G:0.31, T:0.24
Consensus pattern (21 bp):
GTGAGCTGACTTGAGCTCAAA
Found at i:17940358 original size:15 final size:15
Alignment explanation
Indices: 17940338--17940375 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
17940328 GTAATTTAAT
17940338 AATTAAATGAAA-AAA
1 AATTAAAT-AAAGAAA
17940353 AATTAAATAAAGAAA
1 AATTAAATAAAGAAA
17940368 AGATTAAA
1 A-ATTAAA
17940376 CAAGTATCAC
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
14 3 0.14
15 12 0.57
16 6 0.29
ACGTcount: A:0.71, C:0.00, G:0.08, T:0.21
Consensus pattern (15 bp):
AATTAAATAAAGAAA
Found at i:17954874 original size:21 final size:23
Alignment explanation
Indices: 17954834--17954875 Score: 70
Period size: 21 Copynumber: 1.9 Consensus size: 23
17954824 AAGTTCTCGA
17954834 GAAAATAGAAAAGCAAATAGAGT
1 GAAAATAGAAAAGCAAATAGAGT
17954857 GAAAA-AGAAAAG-AAATAGA
1 GAAAATAGAAAAGCAAATAGA
17954876 AAGAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 7 0.37
23 5 0.26
ACGTcount: A:0.67, C:0.02, G:0.21, T:0.10
Consensus pattern (23 bp):
GAAAATAGAAAAGCAAATAGAGT
Found at i:17954881 original size:21 final size:22
Alignment explanation
Indices: 17954833--17954887 Score: 69
Period size: 20 Copynumber: 2.5 Consensus size: 22
17954823 GAAGTTCTCG
*
17954833 AGAAAATAGAAAAGCAAATAGAG
1 AGAAAA-AGAAAAGCAAATAGAA
*
17954856 TGAAAAAGAAAAG-AAATAGAA
1 AGAAAAAGAAAAGCAAATAGAA
17954877 AG-AAAAGAAAA
1 AGAAAAAGAAAA
17954888 CTTCCTCATT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
20 9 0.31
21 8 0.28
22 7 0.24
23 5 0.17
ACGTcount: A:0.71, C:0.02, G:0.20, T:0.07
Consensus pattern (22 bp):
AGAAAAAGAAAAGCAAATAGAA
Found at i:17956132 original size:20 final size:20
Alignment explanation
Indices: 17956109--17956149 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
17956099 TTAAATAAGT
17956109 AATTAAGT-AAATAAAGACAA
1 AATTAAGTAAAATAAAG-CAA
*
17956129 AATTTAGTAAAATAAAGCAA
1 AATTAAGTAAAATAAAGCAA
17956149 A
1 A
17956150 GTATCATCTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.63, C:0.05, G:0.10, T:0.22
Consensus pattern (20 bp):
AATTAAGTAAAATAAAGCAA
Found at i:17956975 original size:43 final size:43
Alignment explanation
Indices: 17956914--17957067 Score: 209
Period size: 43 Copynumber: 3.6 Consensus size: 43
17956904 TCCAATATCA
*
17956914 ATTTGAGATTTCGTGTAAGACCATAGCTAGGCTATTGACATCG
1 ATTTGAGATTTCGTGTAAGACCATAGCTAGGCTATTGGCATCG
* *
17956957 ATTTGAGATTTCGTGTAAGACAATAGCTGGGCTATTGGCATCG
1 ATTTGAGATTTCGTGTAAGACCATAGCTAGGCTATTGGCATCG
* ** *
17957000 ATTTGAGATCTCGTGTAAGAATATAACTAGGCTATTGGCATCG
1 ATTTGAGATTTCGTGTAAGACCATAGCTAGGCTATTGGCATCG
** *
17957043 ATACGAGATTTCCATGTAAGACCAT
1 ATTTGAGATTT-CGTGTAAGACCAT
17957068 GTCTGGGACA
Statistics
Matches: 96, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
43 86 0.90
44 10 0.10
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.32
Consensus pattern (43 bp):
ATTTGAGATTTCGTGTAAGACCATAGCTAGGCTATTGGCATCG
Found at i:17959272 original size:13 final size:14
Alignment explanation
Indices: 17959254--17959282 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
17959244 GTTGTTATTT
17959254 ATAAGT-ATTTTTG
1 ATAAGTGATTTTTG
17959267 ATAAGTGATTTTTG
1 ATAAGTGATTTTTG
17959281 AT
1 AT
17959283 TAATTTAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.40
14 9 0.60
ACGTcount: A:0.31, C:0.00, G:0.17, T:0.52
Consensus pattern (14 bp):
ATAAGTGATTTTTG
Found at i:17966722 original size:27 final size:27
Alignment explanation
Indices: 17966706--17966791 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 27
17966696 TATTTTGGTC
*
17966706 ATTTTACCCTTCGGGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* *
17966733 ATTTTACACTTTGAGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTTCGATA
* * * *
17966760 ATTTTACCCATCAAGGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTATTTCGATA
17966787 ATTTT
1 ATTTT
17966792 TTGGCCCAAG
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.23, C:0.14, G:0.19, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTTCGAGGGTATTTCGATA
Found at i:17970102 original size:17 final size:17
Alignment explanation
Indices: 17970070--17970115 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
17970060 TTGAAGTGTC
* *
17970070 TTTTGAAAATCGTGTTT
1 TTTTGAAAACCATGTTT
17970087 TTTTGAAAACCATGTTT
1 TTTTGAAAACCATGTTT
*
17970104 TCATTGAAAACC
1 T-TTTGAAAACC
17970116 CTTCCTGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 16 0.64
18 9 0.36
ACGTcount: A:0.30, C:0.13, G:0.13, T:0.43
Consensus pattern (17 bp):
TTTTGAAAACCATGTTT
Found at i:17971147 original size:27 final size:27
Alignment explanation
Indices: 17971090--17971292 Score: 187
Period size: 27 Copynumber: 7.5 Consensus size: 27
17971080 CTTTAGGGGC
* **
17971090 ATTTCGGTTATTTTA-CCTTATAGGGGT
1 ATTTCGGTAATTTTACCCTTCGA-GGGT
* * *
17971117 ATTTTGGTCATTTTACCCTTCGAGGGC
1 ATTTCGGTAATTTTACCCTTCGAGGGT
*
17971144 ATTTCGATAATTTTA-CCTATCGAGGGT
1 ATTTCGGTAATTTTACCCT-TCGAGGGT
* * *
17971171 ATTTCAGTAACTTTACCCATC-AGGGGT
1 ATTTCGGTAATTTTACCCTTCGA-GGGT
* * *
17971198 ATTTCGGTGATTTTACCTTTTGAGGGT
1 ATTTCGGTAATTTTACCCTTCGAGGGT
* *
17971225 ATTTCAGTAATTTTACCCTTTGAGGGT
1 ATTTCGGTAATTTTACCCTTCGAGGGT
* * *
17971252 ATTTCGATAATTTTACCCATCAAGGGT
1 ATTTCGGTAATTTTACCCTTCGAGGGT
*
17971279 ATTTAGGTAATTTT
1 ATTTCGGTAATTTT
17971293 TGGCCCAAGC
Statistics
Matches: 142, Mismatches: 29, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 4 0.03
27 130 0.92
28 8 0.06
ACGTcount: A:0.22, C:0.15, G:0.20, T:0.43
Consensus pattern (27 bp):
ATTTCGGTAATTTTACCCTTCGAGGGT
Found at i:17971171 original size:54 final size:54
Alignment explanation
Indices: 17971086--17971292 Score: 213
Period size: 54 Copynumber: 3.8 Consensus size: 54
17971076 TACTCTTTAG
* * * ** *
17971086 GGGCATTTCGGTTATTTTACCTTATAG-GGGTATTTTGGTCATTTTACCCTTCGA
1 GGGCATTTCGATAATTTTACC-TATCGAGGGTATTTCAGTAATTTTACCCTTCGA
* *
17971140 GGGCATTTCGATAATTTTACCTATCGAGGGTATTTCAGTAACTTTACCCATC-A
1 GGGCATTTCGATAATTTTACCTATCGAGGGTATTTCAGTAATTTTACCCTTCGA
* * * * * *
17971193 GGGGTATTTCGGTGATTTTACCTTTTGAGGGTATTTCAGTAATTTTACCCTTTGA
1 -GGGCATTTCGATAATTTTACCTATCGAGGGTATTTCAGTAATTTTACCCTTCGA
* * *
17971248 GGGTATTTCGATAATTTTACCCATCAAGGGTATTT-AGGTAATTTT
1 GGGCATTTCGATAATTTTACCTATCGAGGGTATTTCA-GTAATTTT
17971293 TGGCCCAAGC
Statistics
Matches: 127, Mismatches: 22, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
53 6 0.05
54 120 0.94
55 1 0.01
ACGTcount: A:0.22, C:0.15, G:0.21, T:0.42
Consensus pattern (54 bp):
GGGCATTTCGATAATTTTACCTATCGAGGGTATTTCAGTAATTTTACCCTTCGA
Found at i:17971229 original size:81 final size:81
Alignment explanation
Indices: 17971111--17971292 Score: 226
Period size: 81 Copynumber: 2.2 Consensus size: 81
17971101 TTTACCTTAT
* *
17971111 AGGGGTATTTTGGTCATTTTACCCTTCGAGGGCATTTC-GATAATTTTA-CCTATCGAGGGTATT
1 AGGGGTATTTAGGTAATTTTACCCTTCGAGGGCATTTCAG-TAATTTTACCCT-TCGAGGGTATT
17971174 TC-AGTAACTTTACCCATC
64 TCGA-TAACTTTACCCATC
* * * * * *
17971192 AGGGGTATTTCGGTGATTTTACCTTTTGAGGGTATTTCAGTAATTTTACCCTTTGAGGGTATTTC
1 AGGGGTATTTAGGTAATTTTACCCTTCGAGGGCATTTCAGTAATTTTACCCTTCGAGGGTATTTC
*
17971257 GATAATTTTACCCATC
66 GATAACTTTACCCATC
*
17971273 AAGGGTATTTAGGTAATTTT
1 AGGGGTATTTAGGTAATTTT
17971293 TGGCCCAAGC
Statistics
Matches: 88, Mismatches: 10, Indels: 6
0.85 0.10 0.06
Matches are distributed among these distances:
81 83 0.94
82 5 0.06
ACGTcount: A:0.23, C:0.15, G:0.21, T:0.41
Consensus pattern (81 bp):
AGGGGTATTTAGGTAATTTTACCCTTCGAGGGCATTTCAGTAATTTTACCCTTCGAGGGTATTTC
GATAACTTTACCCATC
Found at i:17989247 original size:22 final size:23
Alignment explanation
Indices: 17989222--17989265 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
17989212 TAACATGTTG
17989222 AATTTTAATTAATTTT-ATAATA
1 AATTTTAATTAATTTTGATAATA
*
17989244 AATTTTGATTAATTTTGATAAT
1 AATTTTAATTAATTTTGATAAT
17989266 TTTCAACAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 15 0.75
23 5 0.25
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (23 bp):
AATTTTAATTAATTTTGATAATA
Found at i:17991783 original size:100 final size:105
Alignment explanation
Indices: 17991597--17991783 Score: 222
Period size: 100 Copynumber: 1.8 Consensus size: 105
17991587 GAGATCCCAT
* * *
17991597 GTAAGACCATGTCTGGGACATAGCATTGGCATCATTGAGATTATGAGACGTCTCATGTAAGACCA
1 GTAAGACCATGTCTGGGACATAGCATGGGCATCA-TGAGATTAAGAGACGTCTCATGTAAAACCA
* * **
17991662 TGTCTTAGAAATGGCGTTGGCACCAAGATGAGAGGTCCCCC
65 TATCTGAGAAATGGCACTGGCACCAAGATGAGAGGTCCCCC
* *
17991703 GTAAGACCATGTCTGGGACATGGCATGGGCA-C-TGATA-TAAGA-AC-TCTCATGTAAAACCAT
1 GTAAGACCATGTCTGGGACATAGCATGGGCATCATGAGATTAAGAGACGTCTCATGTAAAACCAT
* * *
17991763 ATCTGGGATATGGTACTGGCA
66 ATCTGAGAAATGGCACTGGCA
17991784 GTACAAAAAA
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
100 29 0.42
101 2 0.03
102 4 0.06
103 4 0.06
105 1 0.01
106 29 0.42
ACGTcount: A:0.29, C:0.20, G:0.26, T:0.25
Consensus pattern (105 bp):
GTAAGACCATGTCTGGGACATAGCATGGGCATCATGAGATTAAGAGACGTCTCATGTAAAACCAT
ATCTGAGAAATGGCACTGGCACCAAGATGAGAGGTCCCCC
Found at i:17992049 original size:12 final size:12
Alignment explanation
Indices: 17992032--17992070 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
17992022 ATGAGTTATT
17992032 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
17992044 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
17992056 TAAGTGAGTAAG
1 TAAGTAAGCAAG
17992068 TAA
1 TAA
17992071 AGAAGTGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:17992058 original size:20 final size:20
Alignment explanation
Indices: 17992033--17992076 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
17992023 TGAGTTATTT
17992033 AAGTAAGCAAGTAAGTAAAC
1 AAGTAAGCAAGTAAGTAAAC
** *
17992053 AAGTAAGTGAGTAAGTAAAG
1 AAGTAAGCAAGTAAGTAAAC
17992073 AAGT
1 AAGT
17992077 GAGTAAAGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.52, C:0.05, G:0.25, T:0.18
Consensus pattern (20 bp):
AAGTAAGCAAGTAAGTAAAC
Found at i:17998548 original size:6 final size:6
Alignment explanation
Indices: 17998539--17998581 Score: 50
Period size: 6 Copynumber: 6.7 Consensus size: 6
17998529 AAATAAATTT
*
17998539 CTAAAA CTAAAA CTAAAA CTAAAGT CTAAAA GTCTAAAA CTAA
1 CTAAAA CTAAAA CTAAAA CTAAA-A CTAAAA --CTAAAA CTAA
17998582 TTTAATTATG
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
6 21 0.66
7 5 0.16
8 6 0.19
ACGTcount: A:0.58, C:0.16, G:0.05, T:0.21
Consensus pattern (6 bp):
CTAAAA
Found at i:17998619 original size:9 final size:9
Alignment explanation
Indices: 17998607--17998694 Score: 95
Period size: 9 Copynumber: 9.8 Consensus size: 9
17998597 ATTCAATTAT
*
17998607 GTTAATTCA
1 GTTAATTCG
17998616 GTTAATTCG
1 GTTAATTCG
*
17998625 GGTAATTCG
1 GTTAATTCG
*
17998634 GTTAATTTG
1 GTTAATTCG
* *
17998643 GGTAATCCG
1 GTTAATTCG
* *
17998652 GTTAGTTCT
1 GTTAATTCG
17998661 GTTAATTCG
1 GTTAATTCG
* *
17998670 GGTAATTCT
1 GTTAATTCG
17998679 GTTAATTCG
1 GTTAATTCG
17998688 GTTAATT
1 GTTAATT
17998695 TTTAACCAAA
Statistics
Matches: 62, Mismatches: 17, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
9 62 1.00
ACGTcount: A:0.23, C:0.10, G:0.23, T:0.44
Consensus pattern (9 bp):
GTTAATTCG
Found at i:18001127 original size:50 final size:49
Alignment explanation
Indices: 18001034--18001364 Score: 260
Period size: 50 Copynumber: 6.6 Consensus size: 49
18001024 TTTTATGTAC
* * **
18001034 TGCCAATGCCATATCCCAGAAATGGTCTTACATTGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA-TGGACCTCTCATATCGG
* * *
18001084 TGCCCATGCCATATCCCAGACATGGTCTTACGA-GAGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTAC-ATG-GACCTCTCATATCGG
* * * * * * *
18001134 TGCCAACGCCATGTCCCAAATATTGTATTACACGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA-TGGACCTCTCATATCGG
*** * * *
18001184 TGCCAACATCATGTCCCAGACATGGTCTTACGTTGGA-C-CTCATGTCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTAC-ATGGACCTCTCATATCGG
* *
18001232 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGACCTCTCAT-A--TC---GG
* *
18001288 TGCCAATGCCATGTCCCAGACATGGTCTTACACTGG--CTCACATATCGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA-TGGACCTCTCATATCGG
** *
18001336 TG-TGATGCCATGTCCCAAACATGGTCTTA
1 TGCCAATGCCATGTCCCAGACATGGTCTTA
18001365 TACGAGATCG
Statistics
Matches: 235, Mismatches: 31, Indels: 33
0.79 0.10 0.11
Matches are distributed among these distances:
47 25 0.11
48 44 0.19
49 4 0.02
50 113 0.48
51 4 0.02
53 3 0.01
54 6 0.03
56 35 0.15
57 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (49 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGACCTCTCATATCGG
Found at i:18001151 original size:100 final size:98
Alignment explanation
Indices: 18001034--18001318 Score: 290
Period size: 100 Copynumber: 2.8 Consensus size: 98
18001024 TTTTATGTAC
* * * ** *
18001034 TGCCAATGCCATATCCCAGAAATGGTCTTACATTGGAGTTCTCATATCGGTGCCCATGCCATATC
1 TGCCAACGCCATGTCCCAGAAATGGTCTTACATGGGACCTCTCATATCGGTGCCCATGCCATGTC
*
18001099 CCAGACATGGTCTTACG-AGAGACCTCTCATCTCGG
66 CCAGACATGGTCTTACGTAG-GA-C-CTCATCTCGA
* * * *
18001134 TGCCAACGCCATGTCCCA-AATATTGTATTACACGGGACCTCTCATCTCGGTGCCAACAT--CAT
1 TGCCAACGCCATGTCCCAGAA-ATGGTCTTACATGGGACCTCTCATATCGGTGCC--CATGCCAT
* *
18001196 GTCCCAGACATGGTCTTACGTTGGACCTCATGTCGA
63 GTCCCAGACATGGTCTTACGTAGGACCTCATCTCGA
* * *
18001232 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATGCCAATGC
1 TGCCAACGCCATGTCCCAGAAATGGTCTTACATGGGACCTCTCAT-A--TC---GGTGCCCATGC
18001297 CATGTCCCAGACATGGTCTTAC
60 CATGTCCCAGACATGGTCTTAC
18001319 ACTGGCTCAC
Statistics
Matches: 152, Mismatches: 20, Indels: 22
0.78 0.10 0.11
Matches are distributed among these distances:
98 47 0.31
99 4 0.03
100 66 0.43
101 3 0.02
102 5 0.03
104 27 0.18
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (98 bp):
TGCCAACGCCATGTCCCAGAAATGGTCTTACATGGGACCTCTCATATCGGTGCCCATGCCATGTC
CCAGACATGGTCTTACGTAGGACCTCATCTCGA
Found at i:18007135 original size:50 final size:50
Alignment explanation
Indices: 18007027--18007219 Score: 215
Period size: 50 Copynumber: 3.7 Consensus size: 50
18007017 GGGAACGGGA
*
18007027 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATGAGAGG
* *
18007083 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGTGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * * **
18007133 TCCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCAATATGAGAAT
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * *
18007183 TCCCATGTAAGACCATATTTGCGATATGGCATTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
18007220 GTACAGAAAA
Statistics
Matches: 120, Mismatches: 17, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
50 80 0.67
53 3 0.03
55 1 0.01
56 36 0.30
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:18015395 original size:16 final size:16
Alignment explanation
Indices: 18015374--18015418 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
18015364 TTTGAAGCTA
*
18015374 TAGACTGTGAAAACTG
1 TAGACTGTGAAAACTC
18015390 TAGACTGTGAAAACTC
1 TAGACTGTGAAAACTC
*
18015406 TAGATTGTGAAAA
1 TAGACTGTGAAAA
18015419 TGATAGATAG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.40, C:0.11, G:0.22, T:0.27
Consensus pattern (16 bp):
TAGACTGTGAAAACTC
Found at i:18015426 original size:16 final size:17
Alignment explanation
Indices: 18015373--18015425 Score: 67
Period size: 16 Copynumber: 3.3 Consensus size: 17
18015363 ATTTGAAGCT
18015373 ATAGACTGTGAAAACTG
1 ATAGACTGTGAAAACTG
18015390 -TAGACTGTGAAAACT-
1 ATAGACTGTGAAAACTG
* *
18015405 CTAGATTGTGAAAA-TG
1 ATAGACTGTGAAAACTG
18015421 ATAGA
1 ATAGA
18015426 TAGTAAGACA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
15 1 0.03
16 31 0.97
ACGTcount: A:0.42, C:0.09, G:0.23, T:0.26
Consensus pattern (17 bp):
ATAGACTGTGAAAACTG
Found at i:18021277 original size:52 final size:52
Alignment explanation
Indices: 18021204--18021309 Score: 167
Period size: 52 Copynumber: 2.0 Consensus size: 52
18021194 GTAATGGGCC
* * * *
18021204 TAAATTATCGAAATACCCTCGATGGGTAGATTACCGAAATACCTTCGATGGG
1 TAAATTACCGAAATACCCTCGATGGGTAAATTACCGAAATACCTCCGAAGGG
*
18021256 TAAATTACCGAAATACCCTCGATGGGTAAATTATCGAAATACCTCCGAAGGG
1 TAAATTACCGAAATACCCTCGATGGGTAAATTACCGAAATACCTCCGAAGGG
18021308 TA
1 TA
18021310 GAATGGCTGT
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
52 49 1.00
ACGTcount: A:0.35, C:0.20, G:0.20, T:0.25
Consensus pattern (52 bp):
TAAATTACCGAAATACCCTCGATGGGTAAATTACCGAAATACCTCCGAAGGG
Found at i:18021309 original size:26 final size:26
Alignment explanation
Indices: 18021204--18021298 Score: 154
Period size: 26 Copynumber: 3.7 Consensus size: 26
18021194 GTAATGGGCC
*
18021204 TAAATTATCGAAATACCCTCGATGGG
1 TAAATTACCGAAATACCCTCGATGGG
* *
18021230 TAGATTACCGAAATACCTTCGATGGG
1 TAAATTACCGAAATACCCTCGATGGG
18021256 TAAATTACCGAAATACCCTCGATGGG
1 TAAATTACCGAAATACCCTCGATGGG
*
18021282 TAAATTATCGAAATACC
1 TAAATTACCGAAATACC
18021299 TCCGAAGGGT
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 63 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (26 bp):
TAAATTACCGAAATACCCTCGATGGG
Found at i:18021549 original size:26 final size:27
Alignment explanation
Indices: 18021479--18021552 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
18021469 ATGGAGGAAG
*
18021479 TACTGTTACTGGTGGCTCTGCCACAAT
1 TACTGTTACTGGTGGCTTTGCCACAAT
18021506 TACTGTTACTGGTGGCTTTGCCAC-AT
1 TACTGTTACTGGTGGCTTTGCCACAAT
**
18021532 ATACTG-TACTGGCAGCTTTGC
1 -TACTGTTACTGGTGGCTTTGC
18021553 TGCGATATTA
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
26 15 0.35
27 28 0.65
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTTTGCCACAAT
Found at i:18021567 original size:26 final size:26
Alignment explanation
Indices: 18021538--18021587 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
18021528 ACATATACTG
* *
18021538 TACTGGCAGCTTTGCTGCGATATTAT
1 TACTGGCAGCTATGCTGCAATATTAT
18021564 TACTGGCAGCTATGCTGCAATATT
1 TACTGGCAGCTATGCTGCAATATT
18021588 GGTGTGTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (26 bp):
TACTGGCAGCTATGCTGCAATATTAT
Found at i:18026540 original size:49 final size:50
Alignment explanation
Indices: 18026483--18026614 Score: 137
Period size: 48 Copynumber: 2.7 Consensus size: 50
18026473 GGTGGAAGTA
* *
18026483 AGTGGCAGTTTATCTAGAAATTAATGGTGGCTTGTCCAC-AAAGTGTT-TC
1 AGTGGCAGTTTATCTAAAAATTAATGGTGGCTTGTCCACAAAAAT-TTATC
* * * *
18026532 AGTGGCAGTATATCTACATA-T-GTGGTGGCTTGTCCACAAAAATTTATC
1 AGTGGCAGTTTATCTAAAAATTAATGGTGGCTTGTCCACAAAAATTTATC
* * * *
18026580 AGTGGAAATTTATCTAAAAATCAAGGGTGGCTTGT
1 AGTGGCAGTTTATCTAAAAATTAATGGTGGCTTGT
18026615 TTAAAAATGG
Statistics
Matches: 66, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
47 17 0.26
48 22 0.33
49 17 0.26
50 10 0.15
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.33
Consensus pattern (50 bp):
AGTGGCAGTTTATCTAAAAATTAATGGTGGCTTGTCCACAAAAATTTATC
Found at i:18031916 original size:59 final size:60
Alignment explanation
Indices: 18031851--18031968 Score: 150
Period size: 62 Copynumber: 1.9 Consensus size: 60
18031841 GTCACTTTAA
* * * *
18031851 TATTAAATTAATATAATA-TTTATC-AAGATAAATATTAGATTAAATTTAATACTAAATCT
1 TATTAAAATAATATAA-AGTTTATCTAAGATAAACATTAAAGTAAATTTAATACTAAATCT
*
18031910 TATTAAAATAATATAAAGTTTATCTATAAGATAAACATTAAAGTAAATTTAATATTAAA
1 TATTAAAATAATATAAAGTTTATC--TAAGATAAACATTAAAGTAAATTTAATACTAAA
18031969 CTATTAGACC
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
58 1 0.02
59 21 0.42
62 28 0.56
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (60 bp):
TATTAAAATAATATAAAGTTTATCTAAGATAAACATTAAAGTAAATTTAATACTAAATCT
Found at i:18034000 original size:49 final size:50
Alignment explanation
Indices: 18033926--18034054 Score: 152
Period size: 49 Copynumber: 2.6 Consensus size: 50
18033916 CTTTGAGATT
* * * *
18033926 ATGAGAGGTCCCATGTAAGATCATGTCTGGGACATAGCGTTGGCACCGAG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATAGCATGGGCACCGAG
* * *
18033976 ATGAGAGG-CCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACCGAT
1 ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATAGCATGGGCACCGAG
** * *
18034025 ATGAGAATTCCCATGTAAGACCATATCTGG
1 ATGAGAGGTCCCACGTAAGACCATGTCTGG
18034055 AATATGGAAT
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 40 0.61
50 26 0.39
ACGTcount: A:0.27, C:0.22, G:0.29, T:0.21
Consensus pattern (50 bp):
ATGAGAGGTCCCACGTAAGACCATGTCTGGGACATAGCATGGGCACCGAG
Found at i:18034068 original size:99 final size:101
Alignment explanation
Indices: 18033885--18034069 Score: 214
Period size: 99 Copynumber: 1.8 Consensus size: 101
18033875 GAGATCCCAT
* * *
18033885 GTAAGACCATGTCTGGGACAGGCATTGGCATCTTTGAGATTATGAGAGGTCCCATGTAAGATCAT
1 GTAAGACCATGTCTGGGACAGGCATGGGCATC--T-AGATTATGAGAAGTCCCATGTAAGACCAT
* * **
18033950 GTCTGGGACATAGCGTTGGCACCGAGATGAGAGGCCCCC
63 ATCTGGAACATAGAATTGGCACCGAGATGAGAGGCCCCC
* *
18033989 GTAAGACCATGTCTGGGACATGGCATGGGCA-C-CGA-TATGAGAATTCCCATGTAAGACCATAT
1 GTAAGACCATGTCTGGGACA-GGCATGGGCATCTAGATTATGAGAAGTCCCATGTAAGACCATAT
* *
18034051 CTGGAATATGGAATTGGCA
65 CTGGAACATAGAATTGGCA
18034070 GTATAGGAAA
Statistics
Matches: 69, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
99 37 0.54
100 2 0.03
104 21 0.30
105 9 0.13
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (101 bp):
GTAAGACCATGTCTGGGACAGGCATGGGCATCTAGATTATGAGAAGTCCCATGTAAGACCATATC
TGGAACATAGAATTGGCACCGAGATGAGAGGCCCCC
Found at i:18041640 original size:50 final size:50
Alignment explanation
Indices: 18041536--18041778 Score: 213
Period size: 50 Copynumber: 4.8 Consensus size: 50
18041526 AGGGAATGAG
*
18041536 ATCCCATGTAAGACTATGTCTGGGACATGGCATTGGCATCTTTGAGATTATGAGAC
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--TGAG---ATGAGAC
* * * *
18041592 ATCCCATGTAAGACCATGTCTGGGACATGGCGTTGACACCGAGATGAGAG
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAC
* * * *
18041642 TTCCC-TCGTAAGACCATGTCTGGGATATGGCATGGGCACTGATATGAGA-
1 ATCCCAT-GTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAC
* * * * * * * * * *
18041691 ACTCTCATGTAAAACCATATCTCGGATATGGAATTGGCAGT-ACAGGAAAC
1 A-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAC
*
18041741 ATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
18041779 TGTTAAATTC
Statistics
Matches: 153, Mismatches: 30, Indels: 15
0.77 0.15 0.08
Matches are distributed among these distances:
49 36 0.24
50 77 0.50
51 1 0.01
53 3 0.02
55 1 0.01
56 35 0.23
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (50 bp):
ATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACTGAGATGAGAC
Found at i:18044067 original size:18 final size:18
Alignment explanation
Indices: 18044044--18044081 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
18044034 TACAAAAGAT
18044044 ATAATAGAGAAATGTGAA
1 ATAATAGAGAAATGTGAA
18044062 ATAATAGAGAAATGTGAA
1 ATAATAGAGAAATGTGAA
18044080 AT
1 AT
18044082 TAAATTTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.00, G:0.21, T:0.24
Consensus pattern (18 bp):
ATAATAGAGAAATGTGAA
Found at i:18050512 original size:40 final size:40
Alignment explanation
Indices: 18050436--18050579 Score: 125
Period size: 40 Copynumber: 3.6 Consensus size: 40
18050426 TAACTCATTC
* *
18050436 AATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
* *
18050476 AATGCCTTCGGGACTTAACCCGGA-ATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATATTA-AAACTCGCACA
* ** ** *
18050516 AAGGCCTTC-GGATCTTAGTCCGGATA-TAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGATATTA-AAAC-TCGCACA
*
18050557 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
18050580 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
39 6 0.07
40 70 0.80
41 12 0.14
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACA
Found at i:18054374 original size:20 final size:20
Alignment explanation
Indices: 18054332--18054370 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
18054322 ATAAACATTA
*
18054332 AATTAATTTAATATTGAGAT
1 AATTAATTTAATATTGAAAT
*
18054352 AATTATTTTAATATT-AAAT
1 AATTAATTTAATATTGAAAT
18054371 TAATAAAATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 3 0.18
20 14 0.82
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (20 bp):
AATTAATTTAATATTGAAAT
Found at i:18054412 original size:37 final size:36
Alignment explanation
Indices: 18054365--18054434 Score: 88
Period size: 37 Copynumber: 1.9 Consensus size: 36
18054355 TATTTTAATA
*
18054365 TTAAATTAATA-AAATACTATTAAGATAAGTATTAAAT
1 TTAAATTAATATAAA-ACTATTAAAATAA-TATTAAAT
* *
18054402 TTAATTTAATATTAAACTATTAAAATAATATTA
1 TTAAATTAATATAAAACTATTAAAATAATATTA
18054435 TTTTTAGGAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
36 5 0.17
37 22 0.76
38 2 0.07
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.41
Consensus pattern (36 bp):
TTAAATTAATATAAAACTATTAAAATAATATTAAAT
Found at i:18056000 original size:16 final size:16
Alignment explanation
Indices: 18055979--18056009 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
18055969 CTATGCATGC
*
18055979 AAAATATAAAAGACAG
1 AAAATACAAAAGACAG
18055995 AAAATACAAAAGACA
1 AAAATACAAAAGACA
18056010 TAATAGTGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.10, G:0.10, T:0.10
Consensus pattern (16 bp):
AAAATACAAAAGACAG
Found at i:18061430 original size:48 final size:47
Alignment explanation
Indices: 18061372--18061566 Score: 203
Period size: 48 Copynumber: 4.1 Consensus size: 47
18061362 CTATGCGTAT
* *
18061372 CGATAATCTGTTATGACACGAGGGTGGCACGGACTGTGTGCATGCCAC
1 CGAT-ATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCCAC
* *
18061420 CGATATTCTGTTGTGACACAAGGGTGGCATGGACTGTGTGCAGGCCAC
1 CGATA-TCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCCAC
* * * * *
18061468 CAATAACTTGTTAAGATACAAGGGTGGCACGGACTATGTGCAGGCCAC
1 CGATATC-TGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCCAC
* * * ** *
18061516 CGGGA-ATCTGTTATTACACAAAGGTGGTACAAACTGTGTGTAGGCCAC
1 C--GATATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCCAC
18061564 CGA
1 CGA
18061567 GAAATCTATT
Statistics
Matches: 121, Mismatches: 22, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
46 2 0.02
47 2 0.02
48 114 0.94
49 2 0.02
50 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (47 bp):
CGATATCTGTTATGACACAAGGGTGGCACGGACTGTGTGCAGGCCAC
Found at i:18069041 original size:48 final size:48
Alignment explanation
Indices: 18068970--18069173 Score: 216
Period size: 48 Copynumber: 4.2 Consensus size: 48
18068960 CTATGCTTAT
*
18068970 CGATAATCTGTTATGACACAAGGGTGGCACAGAATGTGTGCAGGCCAC
1 CGATAATCTGTTATGACACAAGGGTGGCACGGAATGTGTGCAGGCCAC
* * *
18069018 CGATATTCTGTTGTGACACAAGGGTGGCACGGACTGTGTGCAGGCCAC
1 CGATAATCTGTTATGACACAAGGGTGGCACGGAATGTGTGCAGGCCAC
* * * * * *
18069066 CAATAA-CTTGTTAAGATACAA-GGTGGCACGGACTATGTGCAGGTCAC
1 CGATAATC-TGTTATGACACAAGGGTGGCACGGAATGTGTGCAGGCCAC
* * * * *
18069113 CGAGAATCTGTTATTACACAAAGGTGGTAC-GAACTGTGTGTAGGCCAC
1 CGATAATCTGTTATGACACAAGGGTGGCACGGAA-TGTGTGCAGGCCAC
*
18069161 CGAGAAATCTGTT
1 CGA-TAATCTGTT
18069174 TTTATTCCGA
Statistics
Matches: 129, Mismatches: 22, Indels: 9
0.81 0.14 0.06
Matches are distributed among these distances:
47 41 0.32
48 80 0.62
49 8 0.06
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (48 bp):
CGATAATCTGTTATGACACAAGGGTGGCACGGAATGTGTGCAGGCCAC
Found at i:18069158 original size:95 final size:96
Alignment explanation
Indices: 18068978--18069161 Score: 235
Period size: 95 Copynumber: 1.9 Consensus size: 96
18068968 ATCGATAATC
* * * * * *
18068978 TGTTATGACACAAGGGTGGCACAGAATGTGTGCAGGCCACCGATATTCTGTTGTGACACAAGGGT
1 TGTTAAGACACAAGGGTGGCACAGAATATGTGCAGGCCACCGAGAATCTGTTATGACACAAAGGT
*
18069043 GGCACGGACTGTGTGCAGGCCACCAATAACT
66 GGCACGAACTGTGTGCAGGCCACCAATAACT
* * * * *
18069074 TGTTAAGATACAA-GGTGGCACGGACTATGTGCAGGTCACCGAGAATCTGTTATTACACAAAGGT
1 TGTTAAGACACAAGGGTGGCACAGAATATGTGCAGGCCACCGAGAATCTGTTATGACACAAAGGT
* *
18069138 GGTACGAACTGTGTGTAGGCCACC
66 GGCACGAACTGTGTGCAGGCCACC
18069162 GAGAAATCTG
Statistics
Matches: 74, Mismatches: 14, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
95 63 0.85
96 11 0.15
ACGTcount: A:0.27, C:0.21, G:0.29, T:0.23
Consensus pattern (96 bp):
TGTTAAGACACAAGGGTGGCACAGAATATGTGCAGGCCACCGAGAATCTGTTATGACACAAAGGT
GGCACGAACTGTGTGCAGGCCACCAATAACT
Done.