Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 68 of 170
Found at i:20331701 original size:27 final size:25
Alignment explanation
Indices: 20331641--20331701 Score: 61
Period size: 25 Copynumber: 2.3 Consensus size: 25
20331631 ACCATTTAAT
20331641 CTCATTAAGCATATAAAACATAGTA
1 CTCATTAAGCATATAAAACATAGTA
* *
20331666 GTCATTTAAG-ATATAACTAACATGATTA
1 CTCA-TTAAGCATATAA--AACAT-AGTA
20331694 CTCATTAA
1 CTCATTAA
20331702 AATTTACACT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
25 9 0.31
26 5 0.17
27 9 0.31
28 6 0.21
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (25 bp):
CTCATTAAGCATATAAAACATAGTA
Found at i:20339753 original size:22 final size:22
Alignment explanation
Indices: 20339720--20339764 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
20339710 TAGTTTTAGG
*
20339720 TTTAGTTTTCTCTA-AGTTTTC
1 TTTAGTTTTCTCTACACTTTTC
20339741 TTTAGTTTTTCTCTACACTTTTC
1 TTTAG-TTTTCTCTACACTTTTC
20339764 T
1 T
20339765 AGGGTTTTCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 5 0.24
22 9 0.43
23 7 0.33
ACGTcount: A:0.13, C:0.18, G:0.07, T:0.62
Consensus pattern (22 bp):
TTTAGTTTTCTCTACACTTTTC
Found at i:20343027 original size:17 final size:19
Alignment explanation
Indices: 20343001--20343045 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 19
20342991 CAAGATAAAC
20343001 ATTAAAATAA-AT-TTAAT
1 ATTAAAATAACATCTTAAT
*
20343018 ATTAAGATAATCATCTTAAT
1 ATTAAAATAA-CATCTTAAT
20343038 ATTAAAAT
1 ATTAAAAT
20343046 TAATAATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 9 0.39
19 2 0.09
20 12 0.52
ACGTcount: A:0.53, C:0.04, G:0.02, T:0.40
Consensus pattern (19 bp):
ATTAAAATAACATCTTAAT
Found at i:20343091 original size:17 final size:18
Alignment explanation
Indices: 20343059--20343092 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
20343049 TAATATACTA
20343059 TTAAGATAAGTATTAAAT
1 TTAAGATAAGTATTAAAT
*
20343077 TTAAGTTAA-TATTAAA
1 TTAAGATAAGTATTAAA
20343093 CTATTAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.50, C:0.00, G:0.09, T:0.41
Consensus pattern (18 bp):
TTAAGATAAGTATTAAAT
Found at i:20351142 original size:26 final size:26
Alignment explanation
Indices: 20351106--20351156 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
20351096 CACCAATTTT
20351106 GCAGCAAAGCTACCAGTAATAGTATC
1 GCAGCAAAGCTACCAGTAATAGTATC
20351132 GCAGCAAAGCTACCAGTAATAGTAT
1 GCAGCAAAGCTACCAGTAATAGTAT
20351157 ATGTGGCAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.20
Consensus pattern (26 bp):
GCAGCAAAGCTACCAGTAATAGTATC
Found at i:20351387 original size:27 final size:27
Alignment explanation
Indices: 20351330--20351470 Score: 162
Period size: 27 Copynumber: 5.3 Consensus size: 27
20351320 GGGTATAACA
* *
20351330 GTCATTTTA-CC-ATGTGGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
20351355 GACATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
20351382 GTCATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
20351409 GTCATTTTACCCTAT-GGGGTCTTCCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * * *
20351435 GTCATTTTATCCTACGGAGGTATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
20351462 GTCATTTTA
1 GTCATTTTA
20351471 TTGACCTCAC
Statistics
Matches: 97, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
25 8 0.08
26 23 0.24
27 66 0.68
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.42
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:20351419 original size:54 final size:51
Alignment explanation
Indices: 20351330--20351470 Score: 167
Period size: 53 Copynumber: 2.7 Consensus size: 51
20351320 GGGTATAACA
* **
20351330 GTCATTTTACC-ATGTGGGTATTTCAGACATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCTATG-GGGTATTTCAGTCATTTTACCCTAT-GGGGTATTCCG
* *
20351382 GTCATTTTACCCTATGAGGGTATTTCGGTCATTTTACCCTATGGGGTCTTCCG
1 GTCATTTTA-CCTATG-GGGTATTTCAGTCATTTTACCCTATGGGGTATTCCG
*
20351435 GTCATTTTATCCTACGGAGGTATTTCAGTCATTTTA
1 GTCATTTTA-CCTATGG-GGTATTTCAGTCATTTTA
20351471 TTGACCTCAC
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
52 10 0.13
53 41 0.53
54 26 0.34
ACGTcount: A:0.18, C:0.18, G:0.21, T:0.42
Consensus pattern (51 bp):
GTCATTTTACCTATGGGGTATTTCAGTCATTTTACCCTATGGGGTATTCCG
Found at i:20351697 original size:17 final size:18
Alignment explanation
Indices: 20351675--20351709 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
20351665 CATCTGTGTG
*
20351675 GGGCCCAC-GAGCCCATT
1 GGGCCCACAAAGCCCATT
20351692 GGGCCCACAAAGCCCATT
1 GGGCCCACAAAGCCCATT
20351710 TCTTCCCAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.23, C:0.40, G:0.26, T:0.11
Consensus pattern (18 bp):
GGGCCCACAAAGCCCATT
Found at i:20358907 original size:27 final size:26
Alignment explanation
Indices: 20358877--20359046 Score: 178
Period size: 27 Copynumber: 6.3 Consensus size: 26
20358867 GGGTATAATA
* *
20358877 GTCATTTTAACCTATGTGGGTATTTTG
1 GTCATTTTACCCTATG-GGGTATTTCG
* * *
20358904 GTCATTTTACCCGATGGCGGTGTTTTG
1 GTCATTTTACCCTATGG-GGTATTTCG
* *
20358931 GTTATTTTACCCTACAGGGGTATTTCG
1 GTCATTTTACCCTA-TGGGGTATTTCG
* *
20358958 GTCATTTTCCCCTATAGGGGTATTTTG
1 GTCATTTTACCCTAT-GGGGTATTTCG
*
20358985 GTTATTTTACCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATG-GGGTATTTCG
* *
20359012 GTTATTTTACCCTACGGGGTATTTCG
1 GTCATTTTACCCTATGGGGTATTTCG
*
20359038 ATCATTTTA
1 GTCATTTTA
20359047 TTGACCTCAC
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
26 19 0.16
27 100 0.83
28 2 0.02
ACGTcount: A:0.17, C:0.16, G:0.22, T:0.44
Consensus pattern (26 bp):
GTCATTTTACCCTATGGGGTATTTCG
Found at i:20359015 original size:81 final size:80
Alignment explanation
Indices: 20358877--20359046 Score: 236
Period size: 81 Copynumber: 2.1 Consensus size: 80
20358867 GGGTATAATA
* *
20358877 GTCATTTTAACCTATGTGGGTATTTTGGTCATTTTACCCGATGGCGGTGTTTTGGTTATTTTACC
1 GTCATTTTAACCTATGTGGGTATTTTGGTCATTTTACCCGATGGCGGTATTTCGGTTATTTTACC
20358942 CTACAGGGGTATTTCG
66 CTAC-GGGGTATTTCG
** * *
20358958 GTCATTTTCCCCTATAG-GGGTATTTTGGTTATTTTACCCTATGAG-GGTATTTCGGTTATTTTA
1 GTCATTTTAACCTAT-GTGGGTATTTTGGTCATTTTACCCGATG-GCGGTATTTCGGTTATTTTA
20359021 CCCTACGGGGTATTTCG
64 CCCTACGGGGTATTTCG
*
20359038 ATCATTTTA
1 GTCATTTTA
20359047 TTGACCTCAC
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
80 18 0.23
81 59 0.75
82 2 0.03
ACGTcount: A:0.17, C:0.16, G:0.22, T:0.44
Consensus pattern (80 bp):
GTCATTTTAACCTATGTGGGTATTTTGGTCATTTTACCCGATGGCGGTATTTCGGTTATTTTACC
CTACGGGGTATTTCG
Found at i:20360844 original size:24 final size:25
Alignment explanation
Indices: 20360812--20360862 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
20360802 AAATATCATA
*
20360812 TTAATTTTAATTAATTTAAA-TAAT
1 TTAATTTTAATTAATTAAAATTAAT
* *
20360836 TTAATTTTATTTGATTAAAATTAAT
1 TTAATTTTAATTAATTAAAATTAAT
20360861 TT
1 TT
20360863 TCCCAAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 17 0.74
25 6 0.26
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (25 bp):
TTAATTTTAATTAATTAAAATTAAT
Found at i:20363606 original size:63 final size:63
Alignment explanation
Indices: 20363526--20363646 Score: 206
Period size: 63 Copynumber: 1.9 Consensus size: 63
20363516 CCACGAACAT
20363526 TGAGGGTTAGATAGAAATAATTTGGAGGTTTAAAAAATGAAATTGAATGAATAGTGAAAAGAC
1 TGAGGGTTAGATAGAAATAATTTGGAGGTTTAAAAAATGAAATTGAATGAATAGTGAAAAGAC
* * * *
20363589 TGAGGGTTAGGTAGAAATAATTTGGAGGTTTTAAAAATGAAATTGAGTGAGTAGTGAA
1 TGAGGGTTAGATAGAAATAATTTGGAGGTTTAAAAAATGAAATTGAATGAATAGTGAA
20363647 TAGATGGTCC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
63 54 1.00
ACGTcount: A:0.42, C:0.01, G:0.28, T:0.29
Consensus pattern (63 bp):
TGAGGGTTAGATAGAAATAATTTGGAGGTTTAAAAAATGAAATTGAATGAATAGTGAAAAGAC
Found at i:20365726 original size:20 final size:20
Alignment explanation
Indices: 20365703--20365749 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
20365693 GGGTTAAGAT
*
20365703 TGAGCTGAATTAAGCTTGAG
1 TGAGCTGAATTAAGCTCGAG
* * *
20365723 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTAAGCTCGAG
20365743 TGAGCTG
1 TGAGCTG
20365750 GAAACGAGCT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.23, C:0.13, G:0.34, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTAAGCTCGAG
Found at i:20371399 original size:27 final size:26
Alignment explanation
Indices: 20371336--20371392 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
20371326 TAAAACTCTT
*
20371336 TTAAAAGAAAACTCAAGAGAAATTAT
1 TTAAAAGAAAACTCAAGAGAAATTAG
* *
20371362 TTAAAAGAAAACTCACAGAGAATTTCG
1 TTAAAAGAAAACTCA-AGAGAAATTAG
20371389 TTAA
1 TTAA
20371393 TTGAAAAACA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 15 0.56
27 12 0.44
ACGTcount: A:0.53, C:0.11, G:0.12, T:0.25
Consensus pattern (26 bp):
TTAAAAGAAAACTCAAGAGAAATTAG
Found at i:20377039 original size:27 final size:27
Alignment explanation
Indices: 20377008--20377185 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
20376998 TAAATTGTAC
20377008 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
20377035 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
20377061 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
20377089 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
20377117 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
20377144 AGCACTAAGTGTGTGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
20377171 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
20377186 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:20377176 original size:82 final size:81
Alignment explanation
Indices: 20377005--20377185 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
20376995 GATTAAATTG
* *
20377005 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
20377070 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
20377086 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* * **
20377150 AAGTGTGTGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
20377168 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
20377186 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:20384948 original size:27 final size:26
Alignment explanation
Indices: 20384888--20384948 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 26
20384878 TTGTTAAAAC
*
20384888 TTATCTAAAAGAAAACTCAAGAGAATT
1 TTAT-TAAAAGAAAAATCAAGAGAATT
*
20384915 TCT-TTAAAATAAAAATCAAAGAGAATT
1 T-TATTAAAAGAAAAATC-AAGAGAATT
20384942 TTATTAA
1 TTATTAA
20384949 CCCAAAAGCA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
26 12 0.41
27 16 0.55
28 1 0.03
ACGTcount: A:0.52, C:0.08, G:0.08, T:0.31
Consensus pattern (26 bp):
TTATTAAAAGAAAAATCAAGAGAATT
Found at i:20387137 original size:7 final size:7
Alignment explanation
Indices: 20387091--20387144 Score: 54
Period size: 7 Copynumber: 7.6 Consensus size: 7
20387081 GAGTTACTAT
*
20387091 TTTAAGG
1 TTTATGG
20387098 TTTATGG
1 TTTATGG
*
20387105 ATTATGGG
1 TTTAT-GG
*
20387113 TTTAGGG
1 TTTATGG
* *
20387120 GTTATGA
1 TTTATGG
20387127 TTTATGG
1 TTTATGG
20387134 TTTATGG
1 TTTATGG
20387141 TTTA
1 TTTA
20387145 AAGGCTAGGG
Statistics
Matches: 37, Mismatches: 9, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
7 32 0.86
8 5 0.14
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (7 bp):
TTTATGG
Found at i:20387298 original size:26 final size:26
Alignment explanation
Indices: 20387269--20387338 Score: 140
Period size: 26 Copynumber: 2.7 Consensus size: 26
20387259 GATAATATTA
20387269 ATTTGGTTCTTCAAAATCATGTGAAG
1 ATTTGGTTCTTCAAAATCATGTGAAG
20387295 ATTTGGTTCTTCAAAATCATGTGAAG
1 ATTTGGTTCTTCAAAATCATGTGAAG
20387321 ATTTGGTTCTTCAAAATC
1 ATTTGGTTCTTCAAAATC
20387339 GTTTCGGTGT
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 44 1.00
ACGTcount: A:0.30, C:0.13, G:0.17, T:0.40
Consensus pattern (26 bp):
ATTTGGTTCTTCAAAATCATGTGAAG
Found at i:20388418 original size:22 final size:23
Alignment explanation
Indices: 20388393--20388444 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
20388383 CATGTCAGAT
*
20388393 TTTCCCGACTTCATTTCCCC-AA
1 TTTCCCAACTTCATTTCCCCAAA
* *
20388415 TTTCCTAACTTCGTTTCCCCTAAA
1 TTTCCCAACTTCATTTCCCC-AAA
20388439 TTTCCC
1 TTTCCC
20388445 TAAGTTATTC
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
22 17 0.71
24 7 0.29
ACGTcount: A:0.17, C:0.38, G:0.04, T:0.40
Consensus pattern (23 bp):
TTTCCCAACTTCATTTCCCCAAA
Found at i:20392179 original size:43 final size:43
Alignment explanation
Indices: 20392116--20392290 Score: 251
Period size: 43 Copynumber: 4.1 Consensus size: 43
20392106 TTTAGTGGCT
* *
20392116 TTTGTGGAAAAAGCGTCGCTAAAGGTCTTGAGCTGTAGCAGCG
1 TTTGTGGAAAAAGCGCCGCTAAAGGTCTTGAGCTATAGCAGCG
* *
20392159 TTTGTGGAAAAAGCGCCGCTAAAGGTCTTGATCTATAGCGGCG
1 TTTGTGGAAAAAGCGCCGCTAAAGGTCTTGAGCTATAGCAGCG
* * * *
20392202 TTTGTGGGAAAAGCGCCGCTAAAGGTCTTGAGCTATTGCGGCA
1 TTTGTGGAAAAAGCGCCGCTAAAGGTCTTGAGCTATAGCAGCG
* * *
20392245 TTTGTGGAAAAAACGCCGCTAAAGGTCATGATCTATAGCAGCG
1 TTTGTGGAAAAAGCGCCGCTAAAGGTCTTGAGCTATAGCAGCG
20392288 TTT
1 TTT
20392291 ATTTCTAAAA
Statistics
Matches: 117, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
43 117 1.00
ACGTcount: A:0.26, C:0.18, G:0.30, T:0.26
Consensus pattern (43 bp):
TTTGTGGAAAAAGCGCCGCTAAAGGTCTTGAGCTATAGCAGCG
Found at i:20392467 original size:8 final size:8
Alignment explanation
Indices: 20392454--20392488 Score: 52
Period size: 8 Copynumber: 4.2 Consensus size: 8
20392444 AAATATCATA
20392454 AACTAAAT
1 AACTAAAT
20392462 AACTAAAAT
1 AACT-AAAT
*
20392471 AAATAAAT
1 AACTAAAT
20392479 AACTAAAT
1 AACTAAAT
20392487 AA
1 AA
20392489 ACAAACAAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
8 17 0.71
9 7 0.29
ACGTcount: A:0.69, C:0.09, G:0.00, T:0.23
Consensus pattern (8 bp):
AACTAAAT
Found at i:20392479 original size:17 final size:17
Alignment explanation
Indices: 20392451--20392490 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
20392441 GATAAATATC
20392451 ATAAACTAAATAACTAAA
1 ATAAACTAAATAACT-AA
20392469 ATAAA-TAAATAACTAA
1 ATAAACTAAATAACTAA
20392485 ATAAAC
1 ATAAAC
20392491 AAACAAACAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.33
17 9 0.43
18 5 0.24
ACGTcount: A:0.68, C:0.10, G:0.00, T:0.23
Consensus pattern (17 bp):
ATAAACTAAATAACTAA
Found at i:20393792 original size:9 final size:9
Alignment explanation
Indices: 20393769--20393809 Score: 64
Period size: 9 Copynumber: 4.6 Consensus size: 9
20393759 ATTAAAATTA
*
20393769 TTTAAAAAG
1 TTTAAAAAC
*
20393778 TATAAAAAC
1 TTTAAAAAC
20393787 TTTAAAAAC
1 TTTAAAAAC
20393796 TTTAAAAAC
1 TTTAAAAAC
20393805 TTTAA
1 TTTAA
20393810 TATATTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.56, C:0.07, G:0.02, T:0.34
Consensus pattern (9 bp):
TTTAAAAAC
Found at i:20406801 original size:17 final size:18
Alignment explanation
Indices: 20406770--20406805 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
20406760 ATCGAAAAAG
20406770 TGAAAAAATAGAAAAATA
1 TGAAAAAATAGAAAAATA
*
20406788 TGAAAAAA-ATAAAAATA
1 TGAAAAAATAGAAAAATA
20406805 T
1 T
20406806 ATTCTGTGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.72, C:0.00, G:0.08, T:0.19
Consensus pattern (18 bp):
TGAAAAAATAGAAAAATA
Found at i:20414234 original size:42 final size:42
Alignment explanation
Indices: 20414173--20414412 Score: 200
Period size: 42 Copynumber: 5.7 Consensus size: 42
20414163 TTAGCCGATA
** * * * *
20414173 ATGCACTTACCTGCTAGTATATTTGTTTTGGTTTATCTGATG
1 ATGCACTTATGTGCCAGTATAATTGCTTCGGTTTATCTGATG
* * *
20414215 ATGCACTTATGTGTCAGTATAATTGTTTCGGTTTATCCGATG
1 ATGCACTTATGTGCCAGTATAATTGCTTCGGTTTATCTGATG
* * *** *
20414257 ATGCACTTACGTGCCAATATAATTGCTTCGGAACATCTAATG
1 ATGCACTTATGTGCCAGTATAATTGCTTCGGTTTATCTGATG
*
20414299 ATGCACTT-TGTGCCAGCATAATTGCTTCGGTTTAT-TCGATG
1 ATGCACTTATGTGCCAGTATAATTGCTTCGGTTTATCT-GATG
* * * *
20414340 ATGCA-TTACGCGTGCCAGTATAATTGCTTTGGTTTGTCCGAT-
1 ATGCACTTA--TGTGCCAGTATAATTGCTTCGGTTTATCTGATG
* ** *
20414382 ATACACCTCGTGTGCCATTATAATTGCTTCG
1 ATGCA-CTTATGTGCCAGTATAATTGCTTCG
20414413 ACTTGCCCAA
Statistics
Matches: 157, Mismatches: 34, Indels: 14
0.77 0.17 0.07
Matches are distributed among these distances:
40 3 0.02
41 29 0.18
42 98 0.62
43 26 0.17
44 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (42 bp):
ATGCACTTATGTGCCAGTATAATTGCTTCGGTTTATCTGATG
Found at i:20414366 original size:84 final size:84
Alignment explanation
Indices: 20414207--20414368 Score: 238
Period size: 83 Copynumber: 1.9 Consensus size: 84
20414197 GTTTTGGTTT
* * * *
20414207 ATCTGATGATGCACTTATGTGTCAGTATAATTGTTTCGGTTTATCCGATGATGCACTTACGTGCC
1 ATCTAATGATGCACTTATGTGCCAGCATAATTGCTTCGGTTTATCCGATGATGCACTTACGTGCC
20414272 AATATAATTGCTTCGGAAC
66 AATATAATTGCTTCGGAAC
*
20414291 ATCTAATGATGCACTT-TGTGCCAGCATAATTGCTTCGGTTTATTCGATGATGCA-TTACGCGTG
1 ATCTAATGATGCACTTATGTGCCAGCATAATTGCTTCGGTTTATCCGATGATGCACTTA--CGTG
*
20414354 CCAGTATAATTGCTT
64 CCAATATAATTGCTT
20414369 TGGTTTGTCC
Statistics
Matches: 70, Mismatches: 6, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
82 3 0.04
83 34 0.49
84 33 0.47
ACGTcount: A:0.24, C:0.19, G:0.20, T:0.37
Consensus pattern (84 bp):
ATCTAATGATGCACTTATGTGCCAGCATAATTGCTTCGGTTTATCCGATGATGCACTTACGTGCC
AATATAATTGCTTCGGAAC
Found at i:20417071 original size:33 final size:32
Alignment explanation
Indices: 20416984--20417075 Score: 91
Period size: 33 Copynumber: 2.8 Consensus size: 32
20416974 TTTTTTTTAC
* *
20416984 TTATAAA-CTTTTAAATTTAAAAA-AAATAAT
1 TTATAAATATTTTAAATATAAAAATAAATAAT
* *
20417014 TTTTAAATACTTTTATAA-ATTAAAAATAGCATAAT
1 TTATAAATA-TTTTA-AATA-TAAAAATA-AATAAT
20417049 TTATAAATATTTTAAATATAAAAATAA
1 TTATAAATATTTTAAATATAAAAATAA
20417076 TTATTTTTTA
Statistics
Matches: 49, Mismatches: 6, Indels: 12
0.73 0.09 0.18
Matches are distributed among these distances:
30 6 0.12
32 5 0.10
33 18 0.37
34 7 0.14
35 13 0.27
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.41
Consensus pattern (32 bp):
TTATAAATATTTTAAATATAAAAATAAATAAT
Found at i:20430890 original size:184 final size:184
Alignment explanation
Indices: 20430579--20430957 Score: 614
Period size: 184 Copynumber: 2.1 Consensus size: 184
20430569 TAAGTGTGAA
* * *
20430579 ATTTTAATGAGAATTCAGCCAAAGGAATTAAATGGGCTCTTTGGGCTGAATTCTTACATGATGAT
1 ATTTTAATGGGAATTCAGCCAAAAGAATTAAATGGGCTCTTTGGGCTAAATTCTTACATGATGAT
* * * *
20430644 CCACCTATTAAAATAAAATTGAACCCGTAGTTTAAATATTTTACAATTTGGGCCATTTTGATAAT
66 CCACCTATTAAAATAAAATTGAACCCATAGTTTAAATAGTTTACAATTTGGGCCACTTTGATAAA
* * *
20430709 TTGACCTGATATTTAATTAAATTGCTTTCCAAACTTTAGGATGGGCTTGTAGAC
131 TTGACCTGATATTTAATTAAATTACTTTCCAAACTTCAAGATGGGCTTGTAGAC
*
20430763 ATTTTAATGGGAATTCAGGCAAAAGAATTAAATGGGCTCTTTGGGCTAAATTCTTACATGATGAT
1 ATTTTAATGGGAATTCAGCCAAAAGAATTAAATGGGCTCTTTGGGCTAAATTCTTACATGATGAT
* *
20430828 CCACCTATTAAAATAAAATTGAACCTATAGTTTAAATAGTTTACAATTTGGGTCACTTTGATAAA
66 CCACCTATTAAAATAAAATTGAACCCATAGTTTAAATAGTTTACAATTTGGGCCACTTTGATAAA
* *
20430893 TTGGCCTGATATTTAATTAAATTACTTTTCAAACTTCAAGATGGGCTTGTAGAC
131 TTGACCTGATATTTAATTAAATTACTTTCCAAACTTCAAGATGGGCTTGTAGAC
*
20430947 ATCTTAATGGG
1 ATTTTAATGGG
20430958 TCATTTTTTC
Statistics
Matches: 179, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
184 179 1.00
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (184 bp):
ATTTTAATGGGAATTCAGCCAAAAGAATTAAATGGGCTCTTTGGGCTAAATTCTTACATGATGAT
CCACCTATTAAAATAAAATTGAACCCATAGTTTAAATAGTTTACAATTTGGGCCACTTTGATAAA
TTGACCTGATATTTAATTAAATTACTTTCCAAACTTCAAGATGGGCTTGTAGAC
Found at i:20432772 original size:44 final size:45
Alignment explanation
Indices: 20432699--20432796 Score: 182
Period size: 44 Copynumber: 2.2 Consensus size: 45
20432689 CCATACAATC
20432699 ATAAAACCATCAACAATTATATCATTTAAATAAACTAAACATATT
1 ATAAAACCATCAACAATTATATCATTTAAATAAACTAAACATATT
20432744 ATAAAACCATCAAC-ATTATATCATTTAAATAAACTAAACATATT
1 ATAAAACCATCAACAATTATATCATTTAAATAAACTAAACATATT
20432788 AT-AAACCAT
1 ATAAAACCAT
20432797 TCATTTATAT
Statistics
Matches: 53, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
43 7 0.13
44 32 0.60
45 14 0.26
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (45 bp):
ATAAAACCATCAACAATTATATCATTTAAATAAACTAAACATATT
Found at i:20433458 original size:14 final size:14
Alignment explanation
Indices: 20433439--20433466 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
20433429 TAAAGTTATA
20433439 TTTAATAATTCATT
1 TTTAATAATTCATT
20433453 TTTAATAATTCATT
1 TTTAATAATTCATT
20433467 AATAAATTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:20433937 original size:19 final size:19
Alignment explanation
Indices: 20433915--20433952 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
20433905 TCAATCATCC
20433915 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
20433934 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
20433953 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:20438150 original size:43 final size:42
Alignment explanation
Indices: 20438013--20438160 Score: 154
Period size: 43 Copynumber: 3.5 Consensus size: 42
20438003 TATCCTAGAT
* * *
20438013 ATGGTCTTACATGTTATCACATATCGATGCCACT-TCCCAGAC
1 ATGGTCTTACACGTAATCACATA-CGATGCCAATGTCCCAGAC
* * * * * *
20438055 AGGGTCTTAAACGAAATCATATAACGATGCTAATGTCCTAGAC
1 ATGGTCTTACACGTAATCACAT-ACGATGCCAATGTCCCAGAC
*
20438098 ATGGTCTTACACGTAATCACAATACAATGCCAATGTCCCAGAC
1 ATGGTCTTACACGTAATCAC-ATACGATGCCAATGTCCCAGAC
* *
20438141 ATGGTCTTACATGTTATCAC
1 ATGGTCTTACACGTAATCAC
20438161 CTCTCAGTAA
Statistics
Matches: 85, Mismatches: 18, Indels: 5
0.79 0.17 0.05
Matches are distributed among these distances:
42 24 0.28
43 59 0.69
44 2 0.02
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (42 bp):
ATGGTCTTACACGTAATCACATACGATGCCAATGTCCCAGAC
Found at i:20441093 original size:32 final size:32
Alignment explanation
Indices: 20441057--20441122 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
20441047 CATTAACAAC
20441057 TTAACCATCAAACCTAGGTCATTTCTTAATTA
1 TTAACCATCAAACCTAGGTCATTTCTTAATTA
20441089 TTAACCATCAAACCTAGGTCATTTCTTAATTA
1 TTAACCATCAAACCTAGGTCATTTCTTAATTA
20441121 TT
1 TT
20441123 CCTTACAATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.39
Consensus pattern (32 bp):
TTAACCATCAAACCTAGGTCATTTCTTAATTA
Found at i:20442275 original size:26 final size:27
Alignment explanation
Indices: 20442246--20442296 Score: 68
Period size: 26 Copynumber: 1.9 Consensus size: 27
20442236 TTCTTTATAT
* *
20442246 ATATATTTTTTATAATTTTT-TAAAAC
1 ATATATATTTTAGAATTTTTATAAAAC
*
20442272 ATATATATTTTGGAATTTTTATAAA
1 ATATATATTTTAGAATTTTTATAAA
20442297 TATTTTTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 17 0.81
27 4 0.19
ACGTcount: A:0.39, C:0.02, G:0.04, T:0.55
Consensus pattern (27 bp):
ATATATATTTTAGAATTTTTATAAAAC
Found at i:20442309 original size:19 final size:18
Alignment explanation
Indices: 20442285--20442348 Score: 65
Period size: 19 Copynumber: 3.4 Consensus size: 18
20442275 TATATTTTGG
20442285 AATTTTTATAAATATTTTT
1 AATTTTTA-AAATATTTTT
* *
20442304 AATTTTAAAAATTATTTTG
1 AATTTTTAAAA-TATTTTT
* *
20442323 AATTTTGAAAATCTTTTT
1 AATTTTTAAAATATTTTT
20442341 GAATTTTT
1 -AATTTTT
20442349 TTTTTTTGAA
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
18 8 0.22
19 29 0.78
ACGTcount: A:0.36, C:0.02, G:0.05, T:0.58
Consensus pattern (18 bp):
AATTTTTAAAATATTTTT
Found at i:20442914 original size:18 final size:17
Alignment explanation
Indices: 20442873--20442915 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 17
20442863 ATATTCTTTA
*
20442873 GAATTTTTTAAAATTAT
1 GAATTTTTTAAAAATAT
*
20442890 TATATTTTTTAAAAAATAT
1 GA-ATTTTTT-AAAAATAT
20442909 GAATTTT
1 GAATTTT
20442916 AGAAATTTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 3
0.78 0.11 0.11
Matches are distributed among these distances:
17 1 0.05
18 12 0.57
19 8 0.38
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (17 bp):
GAATTTTTTAAAAATAT
Found at i:20442929 original size:27 final size:27
Alignment explanation
Indices: 20442893--20442949 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
20442883 AAATTATTAT
* *
20442893 ATTTTTTAAAAAATATGAATTTTAGAA
1 ATTTTATAAAAAATATGAATTTTAAAA
* * *
20442920 ATTTTATAAATATTTTGAATTTTAAAA
1 ATTTTATAAAAAATATGAATTTTAAAA
20442947 ATT
1 ATT
20442950 AATTTGAATT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (27 bp):
ATTTTATAAAAAATATGAATTTTAAAA
Found at i:20442942 original size:18 final size:19
Alignment explanation
Indices: 20442919--20442961 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
20442909 GAATTTTAGA
* *
20442919 AATTTTATAAA-TATTTTG
1 AATTTTAAAAATTAATTTG
20442937 AATTTTAAAAATTAATTTG
1 AATTTTAAAAATTAATTTG
20442956 AATTTT
1 AATTTT
20442962 TTTTTTATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (19 bp):
AATTTTAAAAATTAATTTG
Found at i:20449897 original size:13 final size:14
Alignment explanation
Indices: 20449869--20449903 Score: 54
Period size: 14 Copynumber: 2.5 Consensus size: 14
20449859 TATCTTTAAT
20449869 ATTTAAAAATACTA
1 ATTTAAAAATACTA
20449883 ATTTAAAAATA-TA
1 ATTTAAAAATACTA
20449896 ATGTTAAA
1 AT-TTAAA
20449904 TATTTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
13 4 0.20
14 16 0.80
ACGTcount: A:0.57, C:0.03, G:0.03, T:0.37
Consensus pattern (14 bp):
ATTTAAAAATACTA
Found at i:20451896 original size:15 final size:15
Alignment explanation
Indices: 20451861--20451890 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
20451851 ACAGAGATAG
20451861 GAAAAAAAAAACAAA
1 GAAAAAAAAAACAAA
20451876 GAAAAAAAAAACAAA
1 GAAAAAAAAAACAAA
20451891 ACAAAAGGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.87, C:0.07, G:0.07, T:0.00
Consensus pattern (15 bp):
GAAAAAAAAAACAAA
Found at i:20458058 original size:22 final size:22
Alignment explanation
Indices: 20458021--20458122 Score: 87
Period size: 22 Copynumber: 4.6 Consensus size: 22
20458011 GTTTATCATC
* *
20458021 TTGCGCTTTGGTGCTTACCGTT
1 TTGCACTTCGGTGCTTACCGTT
* *
20458043 TCGCACTTCGGTGCTTATCGTT
1 TTGCACTTCGGTGCTTACCGTT
** * *
20458065 TTGCACTTTAGTGCCTACTGTT
1 TTGCACTTCGGTGCTTACCGTT
* * ** *
20458087 TTGCACTTTGGTACTTAGTGAT
1 TTGCACTTCGGTGCTTACCGTT
20458109 TTGCACTTCGGTGC
1 TTGCACTTCGGTGC
20458123 CTACTGTTCT
Statistics
Matches: 63, Mismatches: 17, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
22 63 1.00
ACGTcount: A:0.11, C:0.23, G:0.24, T:0.43
Consensus pattern (22 bp):
TTGCACTTCGGTGCTTACCGTT
Found at i:20464000 original size:36 final size:36
Alignment explanation
Indices: 20463960--20464028 Score: 138
Period size: 36 Copynumber: 1.9 Consensus size: 36
20463950 TCAAAGACCA
20463960 ATGAATTTAAAACAAATAGTATAAAATAAAAAAAAT
1 ATGAATTTAAAACAAATAGTATAAAATAAAAAAAAT
20463996 ATGAATTTAAAACAAATAGTATAAAATAAAAAA
1 ATGAATTTAAAACAAATAGTATAAAATAAAAAA
20464029 TATAAGGCAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.67, C:0.03, G:0.06, T:0.25
Consensus pattern (36 bp):
ATGAATTTAAAACAAATAGTATAAAATAAAAAAAAT
Found at i:20464029 original size:17 final size:17
Alignment explanation
Indices: 20463973--20464030 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
20463963 AATTTAAAAC
20463973 AAATAGTATAAAATAAA
1 AAATAGTATAAAATAAA
* **
20463990 AAA-AATATGAATTTAAAA
1 AAATAGTAT-AAAAT-AAA
20464008 CAAATAGTATAAAATAAA
1 -AAATAGTATAAAATAAA
20464026 AAATA
1 AAATA
20464031 TAAGGCAAAA
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
16 4 0.13
17 11 0.35
18 6 0.19
19 6 0.19
20 4 0.13
ACGTcount: A:0.69, C:0.02, G:0.05, T:0.24
Consensus pattern (17 bp):
AAATAGTATAAAATAAA
Found at i:20464954 original size:23 final size:22
Alignment explanation
Indices: 20464911--20464968 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
20464901 AAAGGGTATC
* *
20464911 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
20464932 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
20464955 TGCATATCATATCT
1 TACAAATCATATCT
20464969 AAGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:20464962 original size:17 final size:17
Alignment explanation
Indices: 20464940--20464991 Score: 70
Period size: 19 Copynumber: 2.9 Consensus size: 17
20464930 ATTACAAAAT
20464940 CATATCTTCTAAGATTG
1 CATATCTTCTAAGATTG
20464957 CATATCATATCTAAGATTG
1 CATATC-T-TCTAAGATTG
20464976 CATATCCTTC-AAGATT
1 CATAT-CTTCTAAGATT
20464992 ATGTTTCCAT
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
17 12 0.38
18 3 0.09
19 16 0.50
20 1 0.03
ACGTcount: A:0.33, C:0.19, G:0.10, T:0.38
Consensus pattern (17 bp):
CATATCTTCTAAGATTG
Found at i:20465802 original size:132 final size:131
Alignment explanation
Indices: 20465429--20465816 Score: 503
Period size: 131 Copynumber: 2.9 Consensus size: 131
20465419 GCAACTTCAG
* * *** * **
20465429 GGAGATAAGG-CTGGTGCCTTAAATTTGCTTCCCTACTACCTCAAGAAGATACGCCTCGCCGTCT
1 GGAGAT-AGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCT
* *
20465493 TTAATCTGCTCCACTACTGCTTAGGGAGACAGGATATACAATCTTCAACCTACTCTACTACTGCT
65 TTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTC-ACTACTGCT
*
20465558 CAG
129 CAA
* * * *
20465561 GGAGATAGGACTGGTGGCTTAAATCCGCTT-CCTACTA-TTTCGGAAAGATAAGATTCGTCGTCT
1 GGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTT-GGGAAGATAAGATTCGCCGTCT
* * * * *
20465624 TCGATCTACTTCACTACTACTTAGGGAGACAGGACCTACAATCTTCAACCTACTACACTACTGCT
65 TTGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACT-CACTACTGCT
*
20465689 TAA
129 CAA
20465692 GGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTT
1 GGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTT
* *
20465757 TGATCTGCTCCACTACTGCTTAAGGAGACAGGATCTACAACCTTCAACCTACTCCACTAC
66 TGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACT-CACTAC
20465817 AACCTCAGAG
Statistics
Matches: 218, Mismatches: 33, Indels: 10
0.84 0.13 0.04
Matches are distributed among these distances:
130 1 0.00
131 111 0.51
132 104 0.48
133 2 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.28
Consensus pattern (131 bp):
GGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTT
TGATCTGCTCCACTACTGCTTAGGGAGACAGGATCTACAATCTTCAACCTACTCACTACTGCTCA
A
Found at i:20465939 original size:89 final size:89
Alignment explanation
Indices: 20465808--20466079 Score: 289
Period size: 89 Copynumber: 3.1 Consensus size: 89
20465798 CTTCAACCTA
* * * * * * * * *
20465808 CTCCACTACAACCTC-AGAGAGGCAAGGGTAGTGTTTTTGATCTACTTCACTGCTAGTACAAGAA
1 CTCCGCTACAAACTCAAG-GAGGCAAGGCTGGTGTCTTTGATCTACTTCGCTGCCAATACAGGAA
* *
20465872 GACAAGATCTGCTAT-TTTCGGTC-G
65 GACAAAATCTGCTATCTTT-AGTCTG
* * * * *
20465896 ACTCCGCTGCAAACTCAAGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTACCAATACAGGAG
1 -CTCCGCTACAAACTCAAGGAGGCAAGGCTGGTGTCTTTGATCTACTTCGCTGCCAATACAGGAA
* *
20465961 GACAAAATTTGCTATCTTTATTCTG
65 GACAAAATCTGCTATCTTTAGTCTG
* *
20465986 CTCCGCTACAAACTCAGGGAGGCAAGGCTGATGTCTTTGATCTACTTCGCTGCCAATACAGGAAG
1 CTCCGCTACAAACTCAAGGAGGCAAGGCTGGTGTCTTTGATCTACTTCGCTGCCAATACAGGAAG
* * *
20466051 ACAATATATGTTATCTTTAGTCTG
66 ACAAAATCTGCTATCTTTAGTCTG
20466075 CTCCG
1 CTCCG
20466080 ATGTAACTTT
Statistics
Matches: 151, Mismatches: 29, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
89 145 0.96
90 6 0.04
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.28
Consensus pattern (89 bp):
CTCCGCTACAAACTCAAGGAGGCAAGGCTGGTGTCTTTGATCTACTTCGCTGCCAATACAGGAAG
ACAAAATCTGCTATCTTTAGTCTG
Found at i:20466251 original size:44 final size:44
Alignment explanation
Indices: 20466167--20466280 Score: 115
Period size: 44 Copynumber: 2.6 Consensus size: 44
20466157 ATTTTAATCC
* * * *
20466167 ACTCCACTAAAACTTTAGGGAGATATGATTAGTAGCTTCAATCT
1 ACTCCACTACAACTTCAGGGAGATAAGATTAGTAGCTTCAACCT
* * **
20466211 GA-TTCATTACAACTTCAGGGAGATAAGATT-GATATTTTCAACCT
1 -ACTCCACTACAACTTCAGGGAGATAAGATTAG-TAGCTTCAACCT
*
20466255 ACTCCACTGCAACTTCAGGGAGATAA
1 ACTCCACTACAACTTCAGGGAGATAA
20466281 AGTTTGATGT
Statistics
Matches: 56, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
43 2 0.04
44 53 0.95
45 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (44 bp):
ACTCCACTACAACTTCAGGGAGATAAGATTAGTAGCTTCAACCT
Found at i:20466493 original size:44 final size:44
Alignment explanation
Indices: 20466385--20466509 Score: 146
Period size: 44 Copynumber: 2.9 Consensus size: 44
20466375 GATTTGCTAT
* * * *
20466385 CTTCAGTCTGCTCCACTGTAACTTTAGGGAGATAAGA--CTTCA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTCA
* * * **
20466427 CTTCAATCCGCTCCACTACAACTTCAGGGAGATAGGATTATTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTCA
*
20466471 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATT
20466510 TGCCATGATC
Statistics
Matches: 68, Mismatches: 13, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
42 31 0.46
44 37 0.54
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.30
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTATTCA
Found at i:20466658 original size:225 final size:225
Alignment explanation
Indices: 20466218--20466646 Score: 559
Period size: 225 Copynumber: 1.9 Consensus size: 225
20466208 TCTGATTCAT
20466218 TACAACTTCAGGGAGATAAGATTGATATTTTCAACCTACTCCACTGCAACTTCAGGGAGATAAAG
1 TACAACTTCAGGGAGATAAGATTGATATTTTCAACCTACTCCACTGCAACTTCAGGGAGATAAAG
** * * *
20466283 TTTGATGTGATCTGCTCTACTGCAACTTCAGAGAGATAAGATTTTATGATTTATAGCTTTGATCT
66 TTTGACATGATCTACTCTACTGCAACTTCAGAGAGATAAGATTCTATGATTTATAGCTTTAATCT
* ** * * *
20466348 ATTACACTGCAATCTTCAAGGAAACGAGATTTGCTATCTTCAGTCTGCTCCACTGTAACTTTAGG
131 ATTACACTGCAAGCTTCAAGGAAACGAGATTCACTATCTTCAGTCTGCCCCACTGCAACTTCAGG
20466413 GAGATAAGACTTCACTTCAATCCGCTCCAC
196 GAGATAAGACTTCACTTCAATCCGCTCCAC
* * *
20466443 TACAACTTCAGGGAGATAGGATT-AT-TGGCTTT-AATCTGCTCCACTGCAACTTCAGGGAGAT-
1 TACAACTTCAGGGAGATAAGATTGATAT---TTTCAACCTACTCCACTGCAACTTCAGGGAGATA
* *
20466504 AAGATTTGCCATGATCTACTCTACTGCAACTT-AGAGAGATAAGA-TCTGTGATTTATAGCTTTA
63 AAG-TTTGACATGATCTACTCTACTGCAACTTCAGAGAGATAAGATTCTATGATTTATAGCTTTA
* * * * *
20466567 ATCTGTTCCATTGC-AGCTTC-AGGAAAATGAGATTCACTATCTTTAGTCTGCCCCACTGCAACT
127 ATCTATTACACTGCAAGCTTCAAGG-AAACGAGATTCACTATCTTCAGTCTGCCCCACTGCAACT
*
20466630 TCAGGGGGATAAGACTT
191 TCAGGGAGATAAGACTT
20466647 GTTTTCTTCA
Statistics
Matches: 177, Mismatches: 22, Indels: 13
0.83 0.10 0.06
Matches are distributed among these distances:
221 3 0.02
222 53 0.30
223 28 0.16
224 17 0.10
225 73 0.41
226 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (225 bp):
TACAACTTCAGGGAGATAAGATTGATATTTTCAACCTACTCCACTGCAACTTCAGGGAGATAAAG
TTTGACATGATCTACTCTACTGCAACTTCAGAGAGATAAGATTCTATGATTTATAGCTTTAATCT
ATTACACTGCAAGCTTCAAGGAAACGAGATTCACTATCTTCAGTCTGCCCCACTGCAACTTCAGG
GAGATAAGACTTCACTTCAATCCGCTCCAC
Found at i:20466675 original size:18 final size:19
Alignment explanation
Indices: 20466638--20466676 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
20466628 CTTCAGGGGG
**
20466638 ATAAGACTTGTTTTCTTCA
1 ATAAGACTTGTTAACTTCA
20466657 ATAAGACTTG-TAACTTCA
1 ATAAGACTTGTTAACTTCA
20466675 AT
1 AT
20466677 CTGCTCCACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.33, C:0.15, G:0.10, T:0.41
Consensus pattern (19 bp):
ATAAGACTTGTTAACTTCA
Found at i:20466714 original size:44 final size:44
Alignment explanation
Indices: 20466657--20467111 Score: 353
Period size: 44 Copynumber: 10.2 Consensus size: 44
20466647 GTTTTCTTCA
* * **
20466657 ATAAGACTTGTAACTTCAATCTGCTCCACTGCAACTTCAAAGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGGGAG
* *
20466701 ATAGGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGAGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGGGAG
* ** * * *
20466745 ATAGGATTAT-TGGCTTTAATCTACTCCATTGCAACTTTAGGGAG
1 ATAAGATT-TGTAACTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * ** * * *
20466789 ATAAGATTCGCCATTTTTAGTCTG-TCCCACTGCAACATCAGGGGG
1 ATAAGATTTG-TAACTTTAATCTGCT-CCACTGCAACTTCAGGGAG
* ** * * * *
20466834 ATAAGACTTGCTTTCTTCAGTCTACTCCACTACAACTTCAGGGAG
1 ATAAGATTTG-TAACTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * *
20466879 ATAAGACTTGTAACTTTAATCCGCTCCACTGCAACTTTAGGGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * *
20466923 ATAGGATTAT-TAGCTTTAATCTGCTCTACTGCAACTTCAGGGAG
1 ATAAGATT-TGTAACTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * * *
20466967 ATAAGATTT-TCCATCTTCAGTCTGCTCAACTGCAACTTCAAGGGA-
1 ATAAGATTTGT--AACTTTAATCTGCTCCACTGCAACTTC-AGGGAG
** ** * * * * *
20467012 ATAAGACTTACTTTCTTCAGTCTGCTCCACTGCAATTTTAGGCAG
1 ATAAGA-TTTGTAACTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * *
20467057 ATAAGACTTGTAACTTTAATCTGCTCCACTACAACCTCAGGGAG
1 ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGGGAG
*
20467101 ATAGGATTTGT
1 ATAAGATTTGT
20467112 GGTTTCACCG
Statistics
Matches: 328, Mismatches: 71, Indels: 24
0.78 0.17 0.06
Matches are distributed among these distances:
43 2 0.01
44 192 0.59
45 125 0.38
46 8 0.02
47 1 0.00
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (44 bp):
ATAAGATTTGTAACTTTAATCTGCTCCACTGCAACTTCAGGGAG
Found at i:20467001 original size:178 final size:178
Alignment explanation
Indices: 20466656--20467108 Score: 604
Period size: 178 Copynumber: 2.6 Consensus size: 178
20466646 TGTTTTCTTC
** * ** * *
20466656 AATAAGACTTG-TAACTTCAATCTGCTCCACTGCAACTTCAAAGAGATAGGATTTGTAACTTTAA
1 AATAAGACTTGCTTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAA
* * * *
20466720 TCTGCTCCACTGCAACTTCAGAGAGATAGGATTATTGGCTTTAATCTACTCCATTGCAACTTTAG
66 TCTGCTCCACTGCAACTTCAGGGAGATAGGATTATTAGCTTTAATCTACTCCACTGCAACTTCAG
* * * *
20466785 GGAGATAAGATTCGCCATTTTTAGTCTGTCCCACTGCAACATCAGGGG
131 GGAGATAAGATTCGCCATCTTCAGTCTGTCCAACTGCAACATCAAGGG
* * *
20466833 GATAAGACTTGCTTTCTTCAGTCTACTCCACTACAACTTCAGGGAGATAAGACTTGTAACTTTAA
1 AATAAGACTTGCTTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAA
* * * *
20466898 TCCGCTCCACTGCAACTTTAGGGAGATAGGATTATTAGCTTTAATCTGCTCTACTGCAACTTCAG
66 TCTGCTCCACTGCAACTTCAGGGAGATAGGATTATTAGCTTTAATCTACTCCACTGCAACTTCAG
** *
20466963 GGAGATAAGATTTTCCATCTTCAGTCTG-CTCAACTGCAACTTCAAGGG
131 GGAGATAAGATTCGCCATCTTCAGTCTGTC-CAACTGCAACATCAAGGG
* * * *
20467011 AATAAGACTTACTTTCTTCAGTCTGCTCCACTGCAATTTTAGGCAGATAAGACTTGTAACTTTAA
1 AATAAGACTTGCTTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAA
* *
20467076 TCTGCTCCACTACAACCTCAGGGAGATAGGATT
66 TCTGCTCCACTGCAACTTCAGGGAGATAGGATT
20467109 TGTGGTTTCA
Statistics
Matches: 238, Mismatches: 36, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
177 11 0.05
178 227 0.95
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (178 bp):
AATAAGACTTGCTTTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTTAA
TCTGCTCCACTGCAACTTCAGGGAGATAGGATTATTAGCTTTAATCTACTCCACTGCAACTTCAG
GGAGATAAGATTCGCCATCTTCAGTCTGTCCAACTGCAACATCAAGGG
Found at i:20477139 original size:51 final size:50
Alignment explanation
Indices: 20476954--20477246 Score: 320
Period size: 50 Copynumber: 5.7 Consensus size: 50
20476944 GGTAAAGATA
*
20476954 TCCCATGTAAGACCATGTCTGGGACATGGCATTGCCATCCTTGAGATCATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAG---ATGAGAGG
* *
20477010 TCCCATGTACGACCATGTTTGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
*
20477060 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
** * * * **
20477110 TCCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCATCGATATGAGAAC
1 T-CCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
* * * * * * **
20477161 TCCCATGTAAGACCATATCTGGGATATGGAATTTGCA--GTACATGAAACA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATGAGAGG
*
20477210 TCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
20477247 TATTGTTATC
Statistics
Matches: 205, Mismatches: 30, Indels: 11
0.83 0.12 0.04
Matches are distributed among these distances:
48 1 0.00
49 38 0.19
50 85 0.41
51 42 0.20
53 3 0.01
55 2 0.01
56 34 0.17
ACGTcount: A:0.26, C:0.23, G:0.28, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
Found at i:20477168 original size:101 final size:103
Alignment explanation
Indices: 20476954--20477189 Score: 298
Period size: 101 Copynumber: 2.3 Consensus size: 103
20476944 GGTAAAGATA
*
20476954 TCCCATGTAAGACCATGTCTGGGACATGGCATTGCCATCCTTGAGATCATGAGAGGTCCCATGTA
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGCCATCC-TGAGA--ATGAGAGGTCCCACGTA
* * * **
20477019 CGACCATGTTTGGGACATGGCATTGGCACCGAGATGAGAGG
63 AGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAAC
* * *
20477060 TCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GAG-ATGAGAGGTCCCCCCGTAAG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGCCATCCTGAGAATGAGAGGT-CCCACGTAAG
* *
20477122 ACCATGTCTGGGACATGGCATGGGCATCGATATGAGAAC
65 ACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAAC
* *
20477161 TCCCATGTAAGACCATATCTGGGATATGG
1 TCCCATGTAAGACCATGTCTGGGACATGG
20477190 AATTTGCAGT
Statistics
Matches: 116, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
100 9 0.08
101 67 0.58
103 3 0.03
105 2 0.02
106 35 0.30
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.22
Consensus pattern (103 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGCCATCCTGAGAATGAGAGGTCCCACGTAAGA
CCATGTCTGGGACATGGCATGGGCACCGAGATGAGAAC
Found at i:20481471 original size:5 final size:6
Alignment explanation
Indices: 20481455--20481480 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
20481445 ATATTAAATT
20481455 TAAAAA TAAAAA TAAAAA TAAAAA TA
1 TAAAAA TAAAAA TAAAAA TAAAAA TA
20481481 TTTATTTGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
TAAAAA
Found at i:20481676 original size:29 final size:29
Alignment explanation
Indices: 20481634--20481693 Score: 120
Period size: 29 Copynumber: 2.1 Consensus size: 29
20481624 ATTTAAATTA
20481634 TTATTGATAGTGCGATATCTCCTGACCAT
1 TTATTGATAGTGCGATATCTCCTGACCAT
20481663 TTATTGATAGTGCGATATCTCCTGACCAT
1 TTATTGATAGTGCGATATCTCCTGACCAT
20481692 TT
1 TT
20481694 GCAACGTGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (29 bp):
TTATTGATAGTGCGATATCTCCTGACCAT
Found at i:20507147 original size:23 final size:22
Alignment explanation
Indices: 20507095--20507147 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
20507085 TCCACGTCTT
*
20507095 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
20507117 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
20507140 TTTCTTTT
1 TTTCTTTT
20507148 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:20509701 original size:10 final size:10
Alignment explanation
Indices: 20509686--20509715 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
20509676 TTACCAATTC
20509686 GGTTAATTTT
1 GGTTAATTTT
*
20509696 GGTTAATTTC
1 GGTTAATTTT
20509706 GGTTAATTTT
1 GGTTAATTTT
20509716 AATTTGGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.20, C:0.03, G:0.20, T:0.57
Consensus pattern (10 bp):
GGTTAATTTT
Found at i:20509726 original size:15 final size:16
Alignment explanation
Indices: 20509698--20509728 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
20509688 TTAATTTTGG
20509698 TTAATTTCGGTTAATT
1 TTAATTTCGGTTAATT
20509714 TTAATTT-GGTTAATT
1 TTAATTTCGGTTAATT
20509729 CAGTTAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.26, C:0.03, G:0.13, T:0.58
Consensus pattern (16 bp):
TTAATTTCGGTTAATT
Found at i:20512175 original size:31 final size:31
Alignment explanation
Indices: 20512130--20512188 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
20512120 AAATGACCAT
20512130 TGAACTATTCGAAAGTTTTCATTTAAGTCAC
1 TGAACTATTCGAAAGTTTTCATTTAAGTCAC
* * *
20512161 TGAATTATTTGAAAGTTTTTATTTAAGT
1 TGAACTATTCGAAAGTTTTCATTTAAGT
20512189 GGCTTGGTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.46
Consensus pattern (31 bp):
TGAACTATTCGAAAGTTTTCATTTAAGTCAC
Found at i:20516721 original size:27 final size:27
Alignment explanation
Indices: 20516683--20517017 Score: 305
Period size: 27 Copynumber: 12.6 Consensus size: 27
20516673 TAATAAGCCT
*
20516683 AAATTA-TCGAAATACCCTCGATAGGTA
1 AAATTACT-GAAATACCCTCGATGGGTA
20516710 AAATTACTGAAATACCCTCGATGGGTA
1 AAATTACTGAAATACCCTCGATGGGTA
* * * *
20516737 AAATTATTGAAATACCTTCAATGGGTC
1 AAATTACTGAAATACCCTCGATGGGTA
* *
20516764 AAATTACTAAAATACCTTCGATGGGTA
1 AAATTACTGAAATACCCTCGATGGGTA
* **
20516791 AAGTTACCAAAATACCCTCGATGGGTA
1 AAATTACTGAAATACCCTCGATGGGTA
* * *
20516818 AAACTATTGTAATACCCTCGATGGGTA
1 AAATTACTGAAATACCCTCGATGGGTA
* *
20516845 AAATTACTAAAATACCCTCAATGGGTA
1 AAATTACTGAAATACCCTCGATGGGTA
* *
20516872 AAATTA-TCGAAATACCTTCAATGGGTA
1 AAATTACT-GAAATACCCTCGATGGGTA
* **
20516899 AAATT-GTAGAAATACCCTTAATGGG--
1 AAATTACT-GAAATACCCTCGATGGGTA
** *
20516924 ----TACCAAAATACCTTCGATGGGTA
1 AAATTACTGAAATACCCTCGATGGGTA
* * *
20516947 AAATTACTGAAATGCCCCCGAAGGGTA
1 AAATTACTGAAATACCCTCGATGGGTA
*
20516974 AAATTA-TCGAAATACCCCCGATGGGTA
1 AAATTACT-GAAATACCCTCGATGGGTA
20517001 AAATTA-TCGAAATACCC
1 AAATTACT-GAAATACCC
20517018 CCATAGGGTA
Statistics
Matches: 255, Mismatches: 42, Indels: 22
0.80 0.13 0.07
Matches are distributed among these distances:
21 14 0.05
26 2 0.01
27 238 0.93
28 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATGGGTA
Found at i:20516973 original size:48 final size:48
Alignment explanation
Indices: 20516881--20516973 Score: 109
Period size: 48 Copynumber: 1.9 Consensus size: 48
20516871 AAAATTATCG
* **
20516881 AAATACCTTCAATGGGTAAAATTGTAGAAATACCCTTAATGGGTACCA
1 AAATACCTTCAATGGGTAAAATTCTAGAAATACCCCGAATGGGTACCA
* *
20516929 AAATACCTTCGATGGGTAAAATTACT-GAAATGCCCCCGAA-GGGTA
1 AAATACCTTCAATGGGTAAAATT-CTAGAAAT-ACCCCGAATGGGTA
20516974 AAATTATCGA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 32 0.84
49 6 0.16
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.25
Consensus pattern (48 bp):
AAATACCTTCAATGGGTAAAATTCTAGAAATACCCCGAATGGGTACCA
Found at i:20516985 original size:102 final size:102
Alignment explanation
Indices: 20516828--20517017 Score: 283
Period size: 102 Copynumber: 1.9 Consensus size: 102
20516818 AAACTATTGT
* **
20516828 AATACCCTCGATGGGTAAAATTACTAAAATACCCTCAATGGGTAAAATTATCGAAATACCTTCAA
1 AATACCCTCGATGGGTAAAATTACTAAAATACCCCCAATGGGTAAAATTATCGAAATACCCCCAA
*
20516893 TGGGTAAAATTGTAGAAATACCCTTAATGGGTACCAA
66 TGGGTAAAATTATAGAAATACCCTTAATGGGTACCAA
* * * *
20516930 AATACCTTCGATGGGTAAAATTACTGAAATGCCCCCGAA-GGGTAAAATTATCGAAATACCCCCG
1 AATACCCTCGATGGGTAAAATTACTAAAATACCCCC-AATGGGTAAAATTATCGAAATACCCCCA
*
20516994 ATGGGTAAAATTATCGAAATACCC
65 ATGGGTAAAATTATAGAAATACCC
20517018 CCATAGGGTA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
102 76 0.97
103 2 0.03
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.25
Consensus pattern (102 bp):
AATACCCTCGATGGGTAAAATTACTAAAATACCCCCAATGGGTAAAATTATCGAAATACCCCCAA
TGGGTAAAATTATAGAAATACCCTTAATGGGTACCAA
Found at i:20517027 original size:129 final size:129
Alignment explanation
Indices: 20516691--20517029 Score: 346
Period size: 129 Copynumber: 2.6 Consensus size: 129
20516681 CTAAATTATC
* * * * * **
20516691 GAAATACCCTCGATA-GGTAAAATTACTGAAATACCCTCGATGGGTAAAATTATTGAAATACCTT
1 GAAATACCCCCGA-AGGGTAAAATTACTAAAATACCCCCAATGGGTAAAATTATCGAAATACCCC
* * *
20516755 CAATGGGTCAAATTACTA-AAATA-CCTTCGATGGGTAAAGTTACCAAAATACCCTCGATGGGTA
65 CAATGGGTAAAATT-GTAGAAATACCCTT-AAT-GG----G-TACCAAAATACCCTCGATGGGTA
*
20516818 AAACTATT
122 AAACTACT
* * * * **
20516826 GTAATACCCTCGATGGGTAAAATTACTAAAATACCCTCAATGGGTAAAATTATCGAAATACCTTC
1 GAAATACCCCCGAAGGGTAAAATTACTAAAATACCCCCAATGGGTAAAATTATCGAAATACCCCC
* *
20516891 AATGGGTAAAATTGTAGAAATACCCTTAATGGGTACCAAAATACCTTCGATGGGTAAAATTACT
66 AATGGGTAAAATTGTAGAAATACCCTTAATGGGTACCAAAATACCCTCGATGGGTAAAACTACT
* * *
20516955 GAAATGCCCCCGAAGGGTAAAATTA-TCGAAATACCCCCGATGGGTAAAATTATCGAAATACCCC
1 GAAATACCCCCGAAGGGTAAAATTACT-AAAATACCCCCAATGGGTAAAATTATCGAAATACCCC
20517019 C-ATAGGGTAAA
65 CAAT-GGGTAAA
20517030 CTGACTATTA
Statistics
Matches: 179, Mismatches: 20, Indels: 16
0.83 0.09 0.07
Matches are distributed among these distances:
128 3 0.02
129 89 0.50
130 1 0.01
134 4 0.02
135 78 0.44
136 4 0.02
ACGTcount: A:0.39, C:0.19, G:0.17, T:0.26
Consensus pattern (129 bp):
GAAATACCCCCGAAGGGTAAAATTACTAAAATACCCCCAATGGGTAAAATTATCGAAATACCCCC
AATGGGTAAAATTGTAGAAATACCCTTAATGGGTACCAAAATACCCTCGATGGGTAAAACTACT
Found at i:20525466 original size:15 final size:16
Alignment explanation
Indices: 20525444--20525485 Score: 61
Period size: 15 Copynumber: 2.7 Consensus size: 16
20525434 TGTTAATTTA
20525444 AGAAGAAAAGAGAGAA-
1 AGAAGAAAAGAGA-AAG
20525460 A-AAGAAAAGAGAAAG
1 AGAAGAAAAGAGAAAG
20525475 AGAAGAAAAGA
1 AGAAGAAAAGA
20525486 AACGGTTGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
14 2 0.08
15 12 0.50
16 10 0.42
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (16 bp):
AGAAGAAAAGAGAAAG
Found at i:20525472 original size:22 final size:21
Alignment explanation
Indices: 20525446--20525487 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
20525436 TTAATTTAAG
20525446 AAGA-AAAGAG-AGAAAAAGAA
1 AAGAGAAAGAGAAG-AAAAGAA
20525466 AAGAGAAAGAGAAGAAAAGAA
1 AAGAGAAAGAGAAGAAAAGAA
20525487 A
1 A
20525488 CGGTTGCTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 4 0.20
21 14 0.70
22 2 0.10
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (21 bp):
AAGAGAAAGAGAAGAAAAGAA
Found at i:20544603 original size:45 final size:45
Alignment explanation
Indices: 20544538--20544714 Score: 252
Period size: 45 Copynumber: 4.0 Consensus size: 45
20544528 TACGTGTACC
* *
20544538 GGGTACCATTGATTACAAAGGTGGTTGCTATGCGCTGATTCCAGC-
1 GGGTACCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCA-CT
20544583 GGGTACCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACT
1 GGGTACCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACT
20544628 GGGTACCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACT
1 GGGTACCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACT
* ** * * *
20544673 GAGTATTATTGACTATAAAGGTGG-TCCTGTGTGCTGA-TCCAC
1 GGGTACCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCAC
20544715 CGTGTATCTG
Statistics
Matches: 123, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
43 5 0.04
44 12 0.10
45 106 0.86
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.33
Consensus pattern (45 bp):
GGGTACCATTGATTATAAAGGTGGTTGCTATGTGCTGATTCCACT
Found at i:20545048 original size:21 final size:22
Alignment explanation
Indices: 20545012--20545057 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
20545002 TATTTGCTGG
20545012 AATAAAATTAGTTTAAGTATTT
1 AATAAAATTAGTTTAAGTATTT
* *
20545034 AATAAATTTAG-TTAAGTGTTT
1 AATAAAATTAGTTTAAGTATTT
20545055 AAT
1 AAT
20545058 TTGTTTTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (22 bp):
AATAAAATTAGTTTAAGTATTT
Found at i:20553540 original size:20 final size:22
Alignment explanation
Indices: 20553515--20553554 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
20553505 GTACTTAAGT
20553515 ACATTTT-GTT-GCATTTTTGG
1 ACATTTTAGTTAGCATTTTTGG
20553535 ACATTTTAGTTAGCATTTTT
1 ACATTTTAGTTAGCATTTTT
20553555 AATATTGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 7 0.39
21 3 0.17
22 8 0.44
ACGTcount: A:0.20, C:0.10, G:0.15, T:0.55
Consensus pattern (22 bp):
ACATTTTAGTTAGCATTTTTGG
Found at i:20561759 original size:51 final size:50
Alignment explanation
Indices: 20561643--20561822 Score: 184
Period size: 51 Copynumber: 3.6 Consensus size: 50
20561633 TGATGGTCCG
* * * * * * *
20561643 TGTGTAGTACCAAGTGCAGGCTACTACGTGTACCAGAAAG-ATAGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGTATA-ATCACA
*
20561693 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGCT-TCAATCACA
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAG-TAT-AATCACA
* * * **
20561744 TGTGTAGTACTATGTGCAGGCTACTACGTGTATCAGATAGTGATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGT-ATAATCACA
*
20561795 TGTGTAGTACTATGTGTAGGCTACTATG
1 TGTGTAGTACTATGTGCAGGCTACTATG
20561823 TGAATCGGTA
Statistics
Matches: 109, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
50 35 0.32
51 72 0.66
52 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGTATAATCACA
Found at i:20568097 original size:11 final size:11
Alignment explanation
Indices: 20568065--20568123 Score: 50
Period size: 11 Copynumber: 5.2 Consensus size: 11
20568055 AGAAAAGAGA
*
20568065 GAATGATGAAT
1 GAATGAGGAAT
20568076 G-ATGA-GAAT
1 GAATGAGGAAT
20568085 GAATGAGGAAT
1 GAATGAGGAAT
*
20568096 GATTGAGGGATGAT
1 GAATGA-GGA--AT
20568110 GAATGAAGGAAT
1 GAATG-AGGAAT
20568122 GA
1 GA
20568124 GAGGGTCTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
9 5 0.12
10 8 0.20
11 10 0.25
12 7 0.17
14 9 0.22
15 1 0.03
ACGTcount: A:0.42, C:0.00, G:0.36, T:0.22
Consensus pattern (11 bp):
GAATGAGGAAT
Found at i:20571631 original size:51 final size:50
Alignment explanation
Indices: 20571468--20571649 Score: 149
Period size: 51 Copynumber: 3.6 Consensus size: 50
20571458 TGAAAGTGAT
* * * * *
20571468 GGTCACGTGTGTAGTACTTTGTGCAGGCTACTACGTGTACCAGAATG-ATG
1 GGTCACATGTGTAGTACTATGTGCAGGCTATTACGTGTA-CAGGATGTATC
* * * *
20571518 GGTCGCATGTGTAGTACTATGTGTAGGCTACTATAC--GTACTGGATAGTTTC
1 GGTCACATGTGTAGTACTATGTGCAGGCTA-T-TACGTGTACAGGAT-GTATC
* *
20571569 GATCACGTGTGTAGTACTATGTGCAGGCTATTACGTGTATC-GGATGGTAAT-
1 GGTCACATGTGTAGTACTATGTGCAGGCTATTACGTGTA-CAGGAT-GT-ATC
* *
20571620 GGTCACATGTGTAGTATTATGTGTAGGCTA
1 GGTCACATGTGTAGTACTATGTGCAGGCTA
20571650 CAATGTGAAA
Statistics
Matches: 105, Mismatches: 19, Indels: 15
0.76 0.14 0.11
Matches are distributed among these distances:
49 7 0.07
50 31 0.30
51 62 0.59
52 5 0.05
ACGTcount: A:0.23, C:0.15, G:0.29, T:0.34
Consensus pattern (50 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTATTACGTGTACAGGATGTATC
Found at i:20576389 original size:50 final size:50
Alignment explanation
Indices: 20576242--20576528 Score: 351
Period size: 50 Copynumber: 5.6 Consensus size: 50
20576232 GATGAGATCC
* ** *
20576242 CATGTAAGACCATTTCTGGGACATGGCATTGGCATAATTGAGATTATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGC---ACCGAG---ATGAGAGGTCT
*
20576298 CATGTAAGACCATG-CTGGGACATGGCGTTGGCACCGAGATGAGAGGTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
*
20576347 CATGTAAGACCATGTCTAGGACATGGCATTGGCACCGAGATGAGAGGTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
* * *
20576397 CATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATGAGAGGTCC
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
** * * * **
20576447 CCCGTAAGACCATGTCTGGGACATGGCATGGGCACCTATATGAGAACTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
* *
20576497 CATGTAAGACCATATCTGGGATATGGCATTGG
1 CATGTAAGACCATGTCTGGGACATGGCATTGG
20576529 TAGTACAAGA
Statistics
Matches: 205, Mismatches: 25, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
49 24 0.12
50 147 0.72
52 4 0.02
55 17 0.08
56 13 0.06
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCT
Found at i:20577099 original size:16 final size:16
Alignment explanation
Indices: 20577078--20577115 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
20577068 ATATTCTTAA
20577078 GATATGACCAAAAGAT
1 GATATGACCAAAAGAT
20577094 GATATGACCAAAAGAT
1 GATATGACCAAAAGAT
20577110 GATATG
1 GATATG
20577116 TAAATATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.11, G:0.21, T:0.21
Consensus pattern (16 bp):
GATATGACCAAAAGAT
Found at i:20587024 original size:20 final size:20
Alignment explanation
Indices: 20586982--20587024 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
20586972 TGGTAATTTT
**
20586982 TCTGTCACTTCAATTTTTGC
1 TCTGTCACTTCAATTCCTGC
20587002 TCTGTCCACTTCAATTCCT-C
1 TCTGT-CACTTCAATTCCTGC
20587022 TCT
1 TCT
20587025 ATGATATCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.14, C:0.33, G:0.07, T:0.47
Consensus pattern (20 bp):
TCTGTCACTTCAATTCCTGC
Found at i:20593809 original size:12 final size:12
Alignment explanation
Indices: 20593782--20593819 Score: 53
Period size: 11 Copynumber: 3.3 Consensus size: 12
20593772 TATTTTTTTA
20593782 TTTTTAAAATA-
1 TTTTTAAAATAT
*
20593793 CTTTTAAAATAT
1 TTTTTAAAATAT
20593805 TTTTTAAAAT-T
1 TTTTTAAAATAT
20593816 TTTT
1 TTTT
20593820 AAAGTTTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
11 15 0.62
12 9 0.38
ACGTcount: A:0.37, C:0.03, G:0.00, T:0.61
Consensus pattern (12 bp):
TTTTTAAAATAT
Found at i:20593816 original size:10 final size:10
Alignment explanation
Indices: 20593782--20593881 Score: 66
Period size: 9 Copynumber: 9.9 Consensus size: 10
20593772 TATTTTTTTA
20593782 TTTTTAAAAT
1 TTTTTAAAAT
*
20593792 ACTTTTAAAATAT
1 --TTTTTAAA-AT
20593805 TTTTTAAAAT
1 TTTTTAAAAT
*
20593815 TTTTT-AAAG
1 TTTTTAAAAT
20593824 TTTTT-AAAT
1 TTTTTAAAAT
20593833 TTTTTAAAAAT
1 TTTTT-AAAAT
*
20593844 ACTTTTT-TAAT
1 --TTTTTAAAAT
*
20593855 TTTTTTAAA-
1 TTTTTAAAAT
20593864 -TTTTAAAAT
1 TTTTTAAAAT
*
20593873 ATTTTAAAA
1 TTTTTAAAA
20593882 ATACTTTTTT
Statistics
Matches: 73, Mismatches: 7, Indels: 18
0.74 0.07 0.18
Matches are distributed among these distances:
8 7 0.10
9 21 0.29
10 17 0.23
11 14 0.19
12 7 0.10
13 7 0.10
ACGTcount: A:0.40, C:0.02, G:0.01, T:0.57
Consensus pattern (10 bp):
TTTTTAAAAT
Found at i:20593838 original size:40 final size:41
Alignment explanation
Indices: 20593773--20593916 Score: 150
Period size: 40 Copynumber: 3.5 Consensus size: 41
20593763 AAATATTTTT
* * *
20593773 ATTTTTTTATTTTTAAAATACTTTTAAAATA-TTTTTTAAA
1 ATTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTAAA
*
20593813 ATTTTTTAAAGTTTTTAAAT-TTTTTAAAAATACTTTTTT-AA
1 ATTTTTTAAA-TTTTAAAATATTTTT-AAAATACTTTTTTAAA
* * *
20593854 TTTTTTTAAATTTTAAAATATTTTAAAAATACTTTTTTAATT
1 ATTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTAA-A
* *
20593896 TTTGTTTTAATTTTTAAAATA
1 ATT-TTTTAAATTTTAAAATA
20593917 AATTTTTGGT
Statistics
Matches: 88, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
40 33 0.38
41 30 0.34
42 9 0.10
43 16 0.18
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (41 bp):
ATTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTTAAA
Found at i:20596152 original size:3 final size:3
Alignment explanation
Indices: 20596144--20596168 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
20596134 AAATACTTAG
20596144 ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT A
20596169 AGTAGATAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:20603883 original size:13 final size:13
Alignment explanation
Indices: 20603865--20603893 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
20603855 AGATTCCATA
20603865 TCCATCGTTGAGT
1 TCCATCGTTGAGT
20603878 TCCATCGTTGAGT
1 TCCATCGTTGAGT
20603891 TCC
1 TCC
20603894 TTTGGCCACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.28, G:0.21, T:0.38
Consensus pattern (13 bp):
TCCATCGTTGAGT
Found at i:20604983 original size:21 final size:21
Alignment explanation
Indices: 20604959--20605000 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
20604949 CATACTTTGA
20604959 GACTATCTTAGTTGGTCCATT
1 GACTATCTTAGTTGGTCCATT
20604980 GACTATCTTAGTTGGTCCATT
1 GACTATCTTAGTTGGTCCATT
20605001 ACACTGGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.43
Consensus pattern (21 bp):
GACTATCTTAGTTGGTCCATT
Found at i:20606371 original size:6 final size:6
Alignment explanation
Indices: 20606360--20606407 Score: 51
Period size: 6 Copynumber: 7.8 Consensus size: 6
20606350 AGGTTTCTCA
* * * *
20606360 AAATGG AAATGG AAATGC TAATGC AAATGG AAATGG AGATGAG AAATG
1 AAATGG AAATGG AAATGG AAATGG AAATGG AAATGG AAATG-G AAATG
20606408 ATACATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
6 30 0.86
7 5 0.14
ACGTcount: A:0.48, C:0.04, G:0.29, T:0.19
Consensus pattern (6 bp):
AAATGG
Found at i:20606467 original size:50 final size:50
Alignment explanation
Indices: 20606407--20606507 Score: 166
Period size: 50 Copynumber: 2.0 Consensus size: 50
20606397 GATGAGAAAT
* * **
20606407 GATACATTTGCAAATGTACATGGATTACTCAGAAATGATTGAAAGAATGA
1 GATACATTTGCAAATGTACATGGATTACTCAAAAATAATCAAAAGAATGA
20606457 GATACATTTGCAAATGTACATGGATTACTCAAAAATAATCAAAAGAATGA
1 GATACATTTGCAAATGTACATGGATTACTCAAAAATAATCAAAAGAATGA
20606507 G
1 G
20606508 TTTATGTTTT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.45, C:0.11, G:0.18, T:0.27
Consensus pattern (50 bp):
GATACATTTGCAAATGTACATGGATTACTCAAAAATAATCAAAAGAATGA
Found at i:20613843 original size:14 final size:13
Alignment explanation
Indices: 20613793--20613869 Score: 55
Period size: 13 Copynumber: 5.4 Consensus size: 13
20613783 GAAATTTGCA
*
20613793 GAGAGAGGAATTA
1 GAGAGAGGAATTG
*
20613806 GAGATGAGGATTTTGG
1 GAGA-GAGGA-ATT-G
20613822 GAGAGAGGAATTG
1 GAGAGAGGAATTG
*
20613835 GAGACGAGGATTCTAAG
1 GAGA-GAGGAAT-T--G
*
20613852 GAGAGAAGAATTG
1 GAGAGAGGAATTG
20613865 GAGAG
1 GAGAG
20613870 CAATTTTTCT
Statistics
Matches: 51, Mismatches: 6, Indels: 14
0.72 0.08 0.20
Matches are distributed among these distances:
13 15 0.29
14 13 0.25
15 9 0.18
16 9 0.18
17 5 0.10
ACGTcount: A:0.38, C:0.03, G:0.42, T:0.18
Consensus pattern (13 bp):
GAGAGAGGAATTG
Found at i:20616016 original size:17 final size:18
Alignment explanation
Indices: 20615994--20616028 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
20615984 TAAGAGTTGA
*
20615994 CAAA-TTTATTTTTCTAG
1 CAAATTTTATTATTCTAG
20616011 CAAATTTTATTATTCTAG
1 CAAATTTTATTATTCTAG
20616029 AATGTGAGGC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.31, C:0.11, G:0.06, T:0.51
Consensus pattern (18 bp):
CAAATTTTATTATTCTAG
Found at i:20617908 original size:20 final size:20
Alignment explanation
Indices: 20617801--20617944 Score: 94
Period size: 20 Copynumber: 7.2 Consensus size: 20
20617791 GTTAATTATA
20617801 CCTGATTGCACATACGTGCC
1 CCTGATTGCACATACGTGCC
* * ** *
20617821 CCT-ATTTGTACTTTGGTACC
1 CCTGA-TTGCACATACGTGCC
* *
20617841 CTTGATTGCACATACATGCC
1 CCTGATTGCACATACGTGCC
* * * ** *
20617861 CCTGTTTGTACTTTGGTACC
1 CCTGATTGCACATACGTGCC
20617881 CCTGATTGCACATACGTGCC
1 CCTGATTGCACATACGTGCC
* * * *
20617901 CTTGATTGTAC-TTCAGTACC
1 CCTGATTGCACATAC-GTGCC
*
20617921 CCTGATTGAACATACGTGCC
1 CCTGATTGCACATACGTGCC
20617941 CCTG
1 CCTG
20617945 TTTATACTTC
Statistics
Matches: 86, Mismatches: 34, Indels: 8
0.67 0.27 0.06
Matches are distributed among these distances:
19 3 0.03
20 80 0.93
21 3 0.03
ACGTcount: A:0.19, C:0.30, G:0.18, T:0.33
Consensus pattern (20 bp):
CCTGATTGCACATACGTGCC
Found at i:20617954 original size:40 final size:40
Alignment explanation
Indices: 20617801--20617955 Score: 220
Period size: 40 Copynumber: 3.9 Consensus size: 40
20617791 GTTAATTATA
* *
20617801 CCTGATTGCACATACGTGCCCCTATTTGTACTTTGGTACC
1 CCTGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACC
* * *
20617841 CTTGATTGCACATACATGCCCCTGTTTGTACTTTGGTACC
1 CCTGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACC
* * *
20617881 CCTGATTGCACATACGTGCCCTTGATTGTACTTCAGTACC
1 CCTGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACC
* *
20617921 CCTGATTGAACATACGTGCCCCTGTTTATACTTCG
1 CCTGATTGCACATACGTGCCCCTGTTTGTACTTCG
20617956 ATAATTTCAA
Statistics
Matches: 101, Mismatches: 14, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 101 1.00
ACGTcount: A:0.19, C:0.29, G:0.17, T:0.35
Consensus pattern (40 bp):
CCTGATTGCACATACGTGCCCCTGTTTGTACTTCGGTACC
Found at i:20622673 original size:27 final size:27
Alignment explanation
Indices: 20622632--20622710 Score: 95
Period size: 27 Copynumber: 2.9 Consensus size: 27
20622622 ATTGAATATA
* *
20622632 AAGGGGATTGCTAAGTGCTGATTCCCCC
1 AAGGGG-TTCCTAAGTGATGATTCCCCC
* *
20622660 AAGGGTTTCCTAAGTGATGATTGCCCC
1 AAGGGGTTCCTAAGTGATGATTCCCCC
* *
20622687 AAGGGGTTGCTAAGTGTTGATTCC
1 AAGGGGTTCCTAAGTGATGATTCC
20622711 TCAACTCATT
Statistics
Matches: 43, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
27 38 0.88
28 5 0.12
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (27 bp):
AAGGGGTTCCTAAGTGATGATTCCCCC
Found at i:20624768 original size:50 final size:50
Alignment explanation
Indices: 20624706--20624803 Score: 178
Period size: 50 Copynumber: 2.0 Consensus size: 50
20624696 GCAAGGAGTT
20624706 TCTTGAGCTGAAGCAGGGACGAATGTCTGTGGCAGAATATGAAAGGGATA
1 TCTTGAGCTGAAGCAGGGACGAATGTCTGTGGCAGAATATGAAAGGGATA
* *
20624756 TCTTGAGTTGAAGCAGGGCCGAATGTCTGTGGCAGAATATGAAAGGGA
1 TCTTGAGCTGAAGCAGGGACGAATGTCTGTGGCAGAATATGAAAGGGA
20624804 GTTTGTTAGG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 46 1.00
ACGTcount: A:0.31, C:0.12, G:0.35, T:0.22
Consensus pattern (50 bp):
TCTTGAGCTGAAGCAGGGACGAATGTCTGTGGCAGAATATGAAAGGGATA
Found at i:20631919 original size:137 final size:137
Alignment explanation
Indices: 20631662--20631927 Score: 356
Period size: 137 Copynumber: 1.9 Consensus size: 137
20631652 AACGGGCTTG
* *
20631662 CTCACACAACTTGTCAGTCGAAACATAGCTACACAATGCTACTCACACAAGCTCTTGAGTATCCG
1 CTCACACAACTTGTCAGTCGAAACATAGCTACACAATGCCACTCACACAAGCTCTCGAGTATCCG
** * * *
20631727 CAACAAATGTCGAAACTTAGCCACTAGTAGGACATCCAGGACCAACACTCGAAACATGGTAACCT
66 CAACAAATGTCGAAACGCAGCCACCAGTAGGACATCCAGGACCAACACCCAAAACATGGTAACCT
20631792 GGGTCTA
131 GGGTCTA
* * * *
20631799 CTCACACAAGC-TGTCGGTCGAAACGTAGCTACACAATGCCACTCACACAAGCTGTCGAGTATTC
1 CTCACACAA-CTTGTCAGTCGAAACATAGCTACACAATGCCACTCACACAAGCTCTCGAGTATCC
* * * * *
20631863 GCAACAAATGTC-AGAACGCAGCCACCAGTGGGACGTTCAGGATCAGCACCCAAAACATGGTAAC
65 GCAACAAATGTCGA-AACGCAGCCACCAGTAGGACATCCAGGACCAACACCCAAAACATGGTAAC
20631927 C
129 C
20631928 CTAATGACAT
Statistics
Matches: 111, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
136 1 0.01
137 109 0.98
138 1 0.01
ACGTcount: A:0.33, C:0.29, G:0.19, T:0.18
Consensus pattern (137 bp):
CTCACACAACTTGTCAGTCGAAACATAGCTACACAATGCCACTCACACAAGCTCTCGAGTATCCG
CAACAAATGTCGAAACGCAGCCACCAGTAGGACATCCAGGACCAACACCCAAAACATGGTAACCT
GGGTCTA
Found at i:20635160 original size:40 final size:40
Alignment explanation
Indices: 20635076--20635259 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
20635066 TTGAATGCTG
* * * *
20635076 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
** *
20635115 ATCCGGACTAAGAT-CCGAAGGTATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
20635156 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
20635196 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
20635236 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
20635260 GAATGAGTTA
Statistics
Matches: 123, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 2 0.02
40 111 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:20635213 original size:80 final size:81
Alignment explanation
Indices: 20635076--20635256 Score: 221
Period size: 80 Copynumber: 2.3 Consensus size: 81
20635066 TTGAATGCTG
* * *
20635076 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGTATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
20635140 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
20635156 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
20635217 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
20635236 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
20635257 ATTGAATGAG
Statistics
Matches: 89, Mismatches: 7, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
79 4 0.04
80 76 0.85
81 9 0.10
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:20635280 original size:39 final size:38
Alignment explanation
Indices: 20635157--20635306 Score: 131
Period size: 40 Copynumber: 3.8 Consensus size: 38
20635147 GTTATTAATT
* ** * *
20635157 CCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAATT
1 CCGGGTTAAGTCCCGAAGG-CATTGAACGAGTTACTAA-A
** *
20635197 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 CCGGGTTAAGTCCCGAAGGCATT-GAACGAGTTACT-AAA
*
20635236 TCCGGGTTAAGTCCCGAAGGCATTGAATGAGTTACTATAA
1 -CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTA-AA
* *
20635276 CCGGGCTATGTCCCGAAGGCACTTGAACGAG
1 CCGGGTTAAGTCCCGAAGGCA-TTGAACGAG
20635307 GAGCTAAATC
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
39 30 0.32
40 63 0.68
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (38 bp):
CCGGGTTAAGTCCCGAAGGCATTGAACGAGTTACTAAA
Found at i:20652120 original size:35 final size:35
Alignment explanation
Indices: 20652080--20652147 Score: 93
Period size: 35 Copynumber: 1.9 Consensus size: 35
20652070 AAAATTATTT
* *
20652080 TATTTAAATATATTTATTA-ATTCTATTTAAATTAA
1 TATTTAAATAT-TTAAATATATTCTATTTAAATTAA
*
20652115 TATTTAAATATTTAAATATATTTTATTTAAATT
1 TATTTAAATATTTAAATATATTCTATTTAAATT
20652148 TATTTATTAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
34 5 0.17
35 24 0.83
ACGTcount: A:0.43, C:0.01, G:0.00, T:0.56
Consensus pattern (35 bp):
TATTTAAATATTTAAATATATTCTATTTAAATTAA
Found at i:20652210 original size:15 final size:15
Alignment explanation
Indices: 20652071--20652203 Score: 59
Period size: 15 Copynumber: 9.2 Consensus size: 15
20652061 TTTTGAACAA
20652071 AAAT-TATTTTATTT
1 AAATATATTTTATTT
20652085 AAATATA-TTTA-TT
1 AAATATATTTTATTT
* * * *
20652098 AATTCTATTTAAATT
1 AAATATATTTTATTT
*
20652113 -AATAT-TTAAATATTT
1 AAATATATT--TTATTT
20652128 AAATATATTTTATTT
1 AAATATATTTTATTT
*
20652143 AAATTTA-TTTA-TT
1 AAATATATTTTATTT
* * * **
20652156 AATTCTATTTAAACT
1 AAATATATTTTATTT
*
20652171 -AATAT-TTAAATATTT
1 AAATATATT--TTATTT
20652186 AAATATATTTTATTT
1 AAATATATTTTATTT
20652201 AAA
1 AAA
20652204 CTTATTTATT
Statistics
Matches: 85, Mismatches: 21, Indels: 25
0.65 0.16 0.19
Matches are distributed among these distances:
13 18 0.21
14 24 0.28
15 29 0.34
16 10 0.12
17 4 0.05
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (15 bp):
AAATATATTTTATTT
Found at i:20652261 original size:58 final size:58
Alignment explanation
Indices: 20652071--20652241 Score: 301
Period size: 58 Copynumber: 3.0 Consensus size: 58
20652061 TTTTGAACAA
*
20652071 AAAT-TATTTTATTTAAA-TATATTTATTAATTCTATTTAAATTAATATTTAAATATTT
1 AAATATATTTTATTTAAACT-TATTTATTAATTCTATTTAAACTAATATTTAAATATTT
*
20652128 AAATATATTTTATTTAAATTTATTTATTAATTCTATTTAAACTAATATTTAAATATTT
1 AAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAACTAATATTTAAATATTT
20652186 AAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAACTAATATTTAAATAT
1 AAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAACTAATATTTAAATAT
20652242 ATCAAATAGT
Statistics
Matches: 110, Mismatches: 2, Indels: 3
0.96 0.02 0.03
Matches are distributed among these distances:
57 4 0.04
58 105 0.95
59 1 0.01
ACGTcount: A:0.42, C:0.04, G:0.00, T:0.54
Consensus pattern (58 bp):
AAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAACTAATATTTAAATATTT
Found at i:20652541 original size:7 final size:7
Alignment explanation
Indices: 20652497--20652673 Score: 62
Period size: 7 Copynumber: 25.0 Consensus size: 7
20652487 AATAATTAAT
20652497 CTAAACC
1 CTAAACC
*
20652504 CAAAACC
1 CTAAACC
20652511 CT-AACC
1 CTAAACC
*
20652517 C-AACCC
1 CTAAACC
*
20652523 CTGAATCC
1 CT-AAACC
20652531 CTAAACC
1 CTAAACC
*
20652538 CTAAATCT
1 CTAAA-CC
*
20652546 CT-AACT
1 CTAAACC
*
20652552 CTTAACC
1 CTAAACC
*
20652559 C-ATAACGT
1 CTA-AAC-C
*
20652567 CTAACCC
1 CTAAACC
20652574 CTAAATCC
1 CTAAA-CC
*
20652582 CTAACCC
1 CTAAACC
*
20652589 CTAAACT
1 CTAAACC
*
20652596 TTAAACC
1 CTAAACC
*
20652603 CTTAAGCC
1 C-TAAACC
20652611 TCTAAACCC
1 -CTAAA-CC
20652620 CTAAACC
1 CTAAACC
*
20652627 GT-AACC
1 CTAAACC
* *
20652633 CGAATCC
1 CTAAACC
*
20652640 CTAACCC
1 CTAAACC
* *
20652647 CCAACCC
1 CTAAACC
20652654 CT-AA-C
1 CTAAACC
20652659 CTAAATCC
1 CTAAA-CC
20652667 CTAAACC
1 CTAAACC
20652674 AATTAAATAA
Statistics
Matches: 125, Mismatches: 29, Indels: 32
0.67 0.16 0.17
Matches are distributed among these distances:
5 3 0.02
6 20 0.16
7 61 0.49
8 37 0.30
9 4 0.03
ACGTcount: A:0.36, C:0.42, G:0.03, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:20652919 original size:14 final size:15
Alignment explanation
Indices: 20652900--20652932 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
20652890 CTTAAACCAA
20652900 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
20652914 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
20652929 AATC
1 AATC
20652933 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:20653325 original size:20 final size:19
Alignment explanation
Indices: 20653284--20653327 Score: 52
Period size: 20 Copynumber: 2.3 Consensus size: 19
20653274 AATTTTAATT
*
20653284 AATATAAATAAACAAATTA
1 AATATAAATAAACAAATCA
* *
20653303 AATAGTAAATAGACAGATCA
1 AATA-TAAATAAACAAATCA
20653323 AATAT
1 AATAT
20653328 TTTTGCAGCG
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
19 5 0.24
20 16 0.76
ACGTcount: A:0.61, C:0.07, G:0.07, T:0.25
Consensus pattern (19 bp):
AATATAAATAAACAAATCA
Found at i:20653396 original size:41 final size:40
Alignment explanation
Indices: 20653335--20653643 Score: 290
Period size: 41 Copynumber: 7.7 Consensus size: 40
20653325 TATTTTTGCA
*
20653335 GCGCTTTTTCAAAAACGCCGCTAAAGTCCCGAGCATTAGCG
1 GCGCCTTTTCAAAAACGCCGCTAAAG-CCCGAGCATTAGCG
* * *
20653376 ACGCCTTTTCAAAAACGCCGCTAAAGCCTTGAGCATTAGTG
1 GCGCCTTTTCAAAAACGCCGCTAAAGCC-CGAGCATTAGCG
* * * *
20653417 GTGCATTTTCAAAAACACCGCTAAAGCCCTGAGCATTAGTG
1 GCGCCTTTTCAAAAACGCCGCTAAAGCCC-GAGCATTAGCG
20653458 GCGCCTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCG
1 GCGCCTTTTCAAAAACGCCGCTAAAGCCC-GAGCATTAGCG
* ** ** *
20653499 GCGCCTTTCCAAAAACGCCGCT-AA-TTC-AAAAAT-GC-
1 GCGCCTTTTCAAAAACGCCGCTAAAGCCCGAGCATTAGCG
* * *
20653534 -CG-CTAATTCAAAAACACCGCTAAAGCCCCGAGCATTAGAG
1 GCGCCT-TTTCAAAAACGCCGCTAAAG-CCCGAGCATTAGCG
* * *
20653574 GTGCTTTTTCGAAAACGCCGCTAAAGACCCGAGCATTAGCG
1 GCGCCTTTTCAAAAACGCCGCTAAAG-CCCGAGCATTAGCG
* * **
20653615 ACGCTTTTTCAAAATTGCCGCTAAAGCCC
1 GCGCCTTTTCAAAAACGCCGCTAAAGCCC
20653644 CGAAAGGTCA
Statistics
Matches: 217, Mismatches: 40, Indels: 23
0.77 0.14 0.08
Matches are distributed among these distances:
33 2 0.01
34 15 0.07
35 2 0.01
36 2 0.01
37 4 0.02
38 3 0.01
39 2 0.01
40 7 0.03
41 179 0.82
42 1 0.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (40 bp):
GCGCCTTTTCAAAAACGCCGCTAAAGCCCGAGCATTAGCG
Found at i:20653477 original size:82 final size:82
Alignment explanation
Indices: 20653335--20653643 Score: 321
Period size: 82 Copynumber: 3.9 Consensus size: 82
20653325 TATTTTTGCA
*
20653335 GCGCTTTTTCAAAAACGCCGCTAAAGTCCCGAGCATTAGCGACGCCTTTTCAAAAACGCCGCTAA
1 GCGCATTTTCAAAAACGCCGCTAAAGTCCCGAGCATTAGCGACGCCTTTTCAAAAACGCCGCTAA
* *
20653400 AGCCTTGAGCATTAGTG
66 AGCCCTGAGCATTAGCG
* * * *
20653417 GTGCATTTTCAAAAACACCGCTAAAG-CCCTGAGCATTAGTGGCGCCTTTTCAAAAACGCCGCTA
1 GCGCATTTTCAAAAACGCCGCTAAAGTCCC-GAGCATTAGCGACGCCTTTTCAAAAACGCCGCTA
20653481 AAGCCCTGAGCATTAGCG
65 AAGCCCTGAGCATTAGCG
* * * ** * * *
20653499 GCGCCTTTCCAAAAACGCCGCT-AA-T-TC-AAAAAT-GC--CG-CTAATTCAAAAACACCGCTA
1 GCGCATTTTCAAAAACGCCGCTAAAGTCCCGAGCATTAGCGACGCCT-TTTCAAAAACGCCGCTA
* *
20653556 AAGCCCCGAGCATTAGAG
65 AAGCCCTGAGCATTAGCG
* * * * * **
20653574 GTGCTTTTTCGAAAACGCCGCTAAAGACCCGAGCATTAGCGACGCTTTTTCAAAATTGCCGCTAA
1 GCGCATTTTCAAAAACGCCGCTAAAGTCCCGAGCATTAGCGACGCCTTTTCAAAAACGCCGCTAA
20653639 AGCCC
66 AGCCC
20653644 CGAAAGGTCA
Statistics
Matches: 182, Mismatches: 34, Indels: 22
0.76 0.14 0.09
Matches are distributed among these distances:
74 2 0.01
75 51 0.28
76 2 0.01
77 1 0.01
78 4 0.02
79 3 0.02
80 3 0.02
81 5 0.03
82 110 0.60
83 1 0.01
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (82 bp):
GCGCATTTTCAAAAACGCCGCTAAAGTCCCGAGCATTAGCGACGCCTTTTCAAAAACGCCGCTAA
AGCCCTGAGCATTAGCG
Found at i:20653547 original size:18 final size:17
Alignment explanation
Indices: 20653508--20653556 Score: 80
Period size: 17 Copynumber: 2.9 Consensus size: 17
20653498 GGCGCCTTTC
20653508 CAAAAACGCCGCTAATT
1 CAAAAACGCCGCTAATT
*
20653525 CAAAAATGCCGCTAATT
1 CAAAAACGCCGCTAATT
*
20653542 CAAAAACACCGCTAA
1 CAAAAACGCCGCTAA
20653557 AGCCCCGAGC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.45, C:0.29, G:0.10, T:0.16
Consensus pattern (17 bp):
CAAAAACGCCGCTAATT
Found at i:20653608 original size:116 final size:117
Alignment explanation
Indices: 20653335--20653638 Score: 362
Period size: 116 Copynumber: 2.5 Consensus size: 117
20653325 TATTTTTGCA
20653335 GCGCTTTTTCAAAAACGCCGCTAAAGTCCCGAGCATTAGCGACGCCTTTTCAAAAACGCCGCTAA
1 GCGCTTTTTCAAAAACGCCGCTAAAG-CCCGAGCATTAGCGACGCCTTTTCAAAAACGCCGCT-A
** * ** * * *
20653400 AGCCTTGAGCATTAGTGGTGCATTTTCAAAAACACCGCTAAAGCCCTGAGCATTAGTG
64 A--CTT--GCAAAAATGCCGCATATTCAAAAACACCGCTAAAGCCCCGAGCATTAGAG
* * *
20653458 GCGCCTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCCTTTCCAAAAACGCCGCTAA
1 GCGCTTTTTCAAAAACGCCGCTAAAGCCC-GAGCATTAGCGACGCCTTTTCAAAAACGCCGCTAA
20653523 -TT-CAAAAATGCCGC-TAATTCAAAAACACCGCTAAAGCCCCGAGCATTAGAG
65 CTTGCAAAAATGCCGCAT-ATTCAAAAACACCGCTAAAGCCCCGAGCATTAGAG
* * * **
20653574 GTGCTTTTTCGAAAACGCCGCTAAAGACCCGAGCATTAGCGACGCTTTTTCAAAATTGCCGCTAA
1 GCGCTTTTTCAAAAACGCCGCTAAAG-CCCGAGCATTAGCGACGCCTTTTCAAAAACGCCGCTAA
20653639 AGCCCCGAAA
Statistics
Matches: 159, Mismatches: 19, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
115 1 0.01
116 92 0.58
117 3 0.02
119 2 0.01
122 5 0.03
123 56 0.35
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.22
Consensus pattern (117 bp):
GCGCTTTTTCAAAAACGCCGCTAAAGCCCGAGCATTAGCGACGCCTTTTCAAAAACGCCGCTAAC
TTGCAAAAATGCCGCATATTCAAAAACACCGCTAAAGCCCCGAGCATTAGAG
Found at i:20656225 original size:23 final size:23
Alignment explanation
Indices: 20656195--20656240 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
20656185 ATGAATATAT
*
20656195 AGTTGCTAATGTTGATGGTATTA
1 AGTTGCTAATGTTGATGGAATTA
*
20656218 AGTTGCTAATTTTGATGGAATTA
1 AGTTGCTAATGTTGATGGAATTA
20656241 CCTCTTAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.28, C:0.04, G:0.24, T:0.43
Consensus pattern (23 bp):
AGTTGCTAATGTTGATGGAATTA
Found at i:20658727 original size:48 final size:48
Alignment explanation
Indices: 20658649--20658870 Score: 207
Period size: 48 Copynumber: 4.8 Consensus size: 48
20658639 TGTTAAATGG
* * * *
20658649 TATAT-TGGTTGT-TTTGGAGGGTATACTTGGTTGTGTTCAGAGGTTA
1 TATATATGGTTGTGTTTGAAGGGTACATTTGGTTGTGTTCGGAGGTTA
* * * * *
20658695 TATATATGATGGTGTTTTGCA-GGTACATTTGGTTATGTTCGGAGGGTA
1 TATATATGGTTGTG-TTTGAAGGGTACATTTGGTTGTGTTCGGAGGTTA
* * *
20658743 -A-AT-TGGTTGTGTTTGAAGGGTATACTTGGTTCTGTTCGGAGGTTA
1 TATATATGGTTGTGTTTGAAGGGTACATTTGGTTGTGTTCGGAGGTTA
*
20658788 TATATATGGTTGTGTTTGGAGGGTACATTTGGTTGTGTTCGGATGG-TA
1 TATATATGGTTGTGTTTGAAGGGTACATTTGGTTGTGTTCGGA-GGTTA
*
20658836 -A-AT-TGGTTGTGTTTCG-AGGGTA-AATTGGTTGTGTT
1 TATATATGGTTGTGTTT-GAAGGGTACATTTGGTTGTGTT
20658871 TGGTGGGTGA
Statistics
Matches: 147, Mismatches: 20, Indels: 20
0.79 0.11 0.11
Matches are distributed among these distances:
44 17 0.12
45 46 0.31
46 11 0.07
47 9 0.06
48 57 0.39
49 7 0.05
ACGTcount: A:0.18, C:0.05, G:0.33, T:0.44
Consensus pattern (48 bp):
TATATATGGTTGTGTTTGAAGGGTACATTTGGTTGTGTTCGGAGGTTA
Found at i:20658767 original size:93 final size:92
Alignment explanation
Indices: 20658647--20658870 Score: 310
Period size: 93 Copynumber: 2.4 Consensus size: 92
20658637 TATGTTAAAT
*
20658647 GGTATATTGGTTGT-TTTGGAGGGTATACTTGGTTGTGTTCAGAGGTTATATATATGATGGTGTT
1 GGTAAATTGGTTGTGTTT-GAGGGTATACTTGGTTGTGTTCAGAGGTTATATATATGATGGTG-T
20658711 TTGCA-GGTACATTTGGTTATGTTCGGAG
64 TTGCAGGGTACATTTGGTTATGTTCGGAG
* * * *
20658739 GGTAAATTGGTTGTGTTTGAAGGGTATACTTGGTTCTGTTCGGAGGTTATATATATGGTTGTGTT
1 GGTAAATTGGTTGTGTTTG-AGGGTATACTTGGTTGTGTTCAGAGGTTATATATATGATGGTGTT
* * *
20658804 TGGAGGGTACATTTGGTTGTGTTCGGAT
65 TGCAGGGTACATTTGGTTATGTTCGGAG
*
20658832 GGTAAATTGGTTGTGTTTCGAGGGTA-AATTGGTTGTGTT
1 GGTAAATTGGTTGTGTTT-GAGGGTATACTTGGTTGTGTT
20658871 TGGTGGGTGA
Statistics
Matches: 118, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
92 30 0.25
93 87 0.74
94 1 0.01
ACGTcount: A:0.18, C:0.05, G:0.34, T:0.43
Consensus pattern (92 bp):
GGTAAATTGGTTGTGTTTGAGGGTATACTTGGTTGTGTTCAGAGGTTATATATATGATGGTGTTT
GCAGGGTACATTTGGTTATGTTCGGAG
Found at i:20658797 original size:25 final size:23
Alignment explanation
Indices: 20658716--20658870 Score: 138
Period size: 22 Copynumber: 6.8 Consensus size: 23
20658706 GTGTTTTGCA
*
20658716 GGTACATTTGGTTATGTTCGGAG
1 GGTACATTTGGTTGTGTTCGGAG
* * *
20658739 GGTA-AATTGGTTGTGTTTGAAG
1 GGTACATTTGGTTGTGTTCGGAG
* * *
20658761 GGTATACTTGGTTCTGTTCGGAG
1 GGTACATTTGGTTGTGTTCGGAG
* * *
20658784 GTTATATATATGGTTGTGTTTGGAG
1 GGTACAT-T-TGGTTGTGTTCGGAG
*
20658809 GGTACATTTGGTTGTGTTCGGAT
1 GGTACATTTGGTTGTGTTCGGAG
*
20658832 GGTA-AATTGGTTGTGTTTC-GAG
1 GGTACATTTGGTTGTG-TTCGGAG
*
20658854 GGTA-AATTGGTTGTGTT
1 GGTACATTTGGTTGTGTT
20658871 TGGTGGGTGA
Statistics
Matches: 110, Mismatches: 18, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
21 2 0.02
22 45 0.41
23 43 0.39
24 2 0.02
25 18 0.16
ACGTcount: A:0.17, C:0.05, G:0.35, T:0.43
Consensus pattern (23 bp):
GGTACATTTGGTTGTGTTCGGAG
Found at i:20661085 original size:15 final size:15
Alignment explanation
Indices: 20661047--20661085 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 15
20661037 CTGCTTCATA
*
20661047 TAGATGATTGAATGT
1 TAGATGAATGAATGT
20661062 TAGAT-AATGAATGT
1 TAGATGAATGAATGT
*
20661076 TTGATGAATG
1 TAGATGAATG
20661086 GTATGAGTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 12 0.57
15 9 0.43
ACGTcount: A:0.36, C:0.00, G:0.26, T:0.38
Consensus pattern (15 bp):
TAGATGAATGAATGT
Found at i:20670179 original size:20 final size:18
Alignment explanation
Indices: 20670154--20670190 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
20670144 GGTAGGATTT
20670154 TGCTACTGCATAACTGTTAC
1 TGCTACTG-AT-ACTGTTAC
20670174 TGCTACTGATACTGTTA
1 TGCTACTGATACTGTTA
20670191 TAGGCTAAGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 2 0.12
20 8 0.47
ACGTcount: A:0.24, C:0.22, G:0.16, T:0.38
Consensus pattern (18 bp):
TGCTACTGATACTGTTAC
Found at i:20671038 original size:26 final size:26
Alignment explanation
Indices: 20670978--20671039 Score: 70
Period size: 26 Copynumber: 2.4 Consensus size: 26
20670968 TCTGTAAGTG
*
20670978 TTTTGAAACTGATACAAGCTATGATA
1 TTTTGAAACTGATACAAGCTAGGATA
* * * * *
20671004 TTCTAAAACTGATATATGTTAGGATA
1 TTTTGAAACTGATACAAGCTAGGATA
20671030 TTTTGAAACT
1 TTTTGAAACT
20671040 ACTGTAGGTA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.37, C:0.10, G:0.15, T:0.39
Consensus pattern (26 bp):
TTTTGAAACTGATACAAGCTAGGATA
Found at i:20678709 original size:29 final size:30
Alignment explanation
Indices: 20678667--20678730 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
20678657 AAAGATGCAA
*
20678667 GGAGATGAGGATTTT-GGGTGAGAGGAATT
1 GGAGATGAGGATTTTAGGGAGAGAGGAATT
20678696 GGAGATGAGGATTTTAGGGAGAGAGGAATT
1 GGAGATGAGGATTTTAGGGAGAGAGGAATT
20678726 GGAGA
1 GGAGA
20678731 GCAGTTTTTC
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 15 0.45
30 18 0.55
ACGTcount: A:0.31, C:0.00, G:0.45, T:0.23
Consensus pattern (30 bp):
GGAGATGAGGATTTTAGGGAGAGAGGAATT
Found at i:20678721 original size:16 final size:16
Alignment explanation
Indices: 20678667--20678722 Score: 57
Period size: 16 Copynumber: 3.7 Consensus size: 16
20678657 AAAGATGCAA
20678667 GGAGATGAGGATTTTG
1 GGAGATGAGGATTTTG
* *
20678683 GGTGA-GAGGA-ATT-
1 GGAGATGAGGATTTTG
20678696 GGAGATGAGGATTTTAG
1 GGAGATGAGGATTTT-G
20678713 GGAGA-GAGGA
1 GGAGATGAGGA
20678723 ATTGGAGAGC
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
13 4 0.12
14 7 0.22
15 7 0.22
16 9 0.28
17 5 0.16
ACGTcount: A:0.30, C:0.00, G:0.46, T:0.23
Consensus pattern (16 bp):
GGAGATGAGGATTTTG
Found at i:20684130 original size:21 final size:19
Alignment explanation
Indices: 20684106--20684148 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
20684096 TTTTTAACCC
*
20684106 TAAAAGCACTCTTTATAAATA
1 TAAAAACAC-CTTT-TAAATA
*
20684127 TAAAAACACCTTTTTAATA
1 TAAAAACACCTTTTAAATA
20684146 TAA
1 TAA
20684149 TCTAACCCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 8 0.40
20 4 0.20
21 8 0.40
ACGTcount: A:0.49, C:0.14, G:0.02, T:0.35
Consensus pattern (19 bp):
TAAAAACACCTTTTAAATA
Found at i:20687232 original size:50 final size:49
Alignment explanation
Indices: 20687164--20687356 Score: 208
Period size: 51 Copynumber: 3.9 Consensus size: 49
20687154 AAAGTGAAAG
*
20687164 TGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTATATGTATCGGAA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGG-A
* * *
20687213 TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGA
1 TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGA
* * * * * * *
20687262 TAGTTTCGATCACGTGTGTAGTACTATGTGGAGGCTACTACGTGTATCAGA
1 T-G-ATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGA
* * *
20687313 TGGTAATGGTCACATGTGTAGTACTATGTGAAGGCTGCTATGTG
1 TGAT-A-GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
20687357 AACCGAACAT
Statistics
Matches: 118, Mismatches: 21, Indels: 8
0.80 0.14 0.05
Matches are distributed among these distances:
49 7 0.06
50 41 0.35
51 70 0.59
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (49 bp):
TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTATCGGA
Found at i:20687297 original size:101 final size:102
Alignment explanation
Indices: 20687170--20687354 Score: 266
Period size: 101 Copynumber: 1.8 Consensus size: 102
20687160 AAAGTGATGG
* * *
20687170 TCACATGTGTAGTACTATGTGCAGGCTACTATATGTATCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACATGTGTAGTACTATGTGCAGGCTACTACATGTATCAG-ATGATAATGGTCACATGTGTAGT
*
20687233 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCGA
65 ACTATGTGAAGGCTACTATGCGTACCGGATAGTTTCGA
* * * *
20687271 TCACGTGTGTAGTACTATGTGGAGGCTACTACGTGTATCAGATGGTAATGGTCACATGTGTAGTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACATGTATCAGATGATAATGGTCACATGTGTAGTA
*
20687336 CTATGTGAAGGCTGCTATG
66 CTATGTGAAGGCTACTATG
20687355 TGAACCGAAC
Statistics
Matches: 73, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
100 4 0.05
101 37 0.51
102 32 0.44
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (102 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTACATGTATCAGATGATAATGGTCACATGTGTAGTA
CTATGTGAAGGCTACTATGCGTACCGGATAGTTTCGA
Found at i:20687414 original size:45 final size:45
Alignment explanation
Indices: 20687358--20687448 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
20687348 TGCTATGTGA
* *
20687358 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
* *
20687403 ACCGGACATCATTTATTAATAAGGTGGTTGCTATGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
20687448 A
1 A
20687449 TCGAGTTTCA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCC
Found at i:20696007 original size:24 final size:24
Alignment explanation
Indices: 20695975--20696021 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
20695965 AAAAGCACAG
20695975 TGGATTGAACCTTGAAGATTACAA
1 TGGATTGAACCTTGAAGATTACAA
20695999 TGGATTGAACCTTGAAGATTACA
1 TGGATTGAACCTTGAAGATTACA
20696022 GTGGGGACAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (24 bp):
TGGATTGAACCTTGAAGATTACAA
Found at i:20696370 original size:44 final size:44
Alignment explanation
Indices: 20696302--20697454 Score: 498
Period size: 44 Copynumber: 25.8 Consensus size: 44
20696292 TGGTGAAACC
* * *
20696302 ACAAATCCTATCTCCCTGAGGTTGTAGTGGAGCGGATTAAAGTT
1 ACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * ** * **
20696346 ACAAGTCCTATCTCCCTGAAGTTGTAGTGGAATAGACTAAAGAA
1 ACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * * * * * *
20696390 AGCAAGTCTTAT-TCCCTTGAAGTTGTAGTGGGGCATACTGAAGATG
1 A-CAAATCCTATCTCCC-TGAAGTTGCAGTGGAGCAGATTAAAG-TT
* * * * **
20696436 GCAAAT-CTCATCTCCCTGAAGTTGCAGTAGAGAAAATTAAAGCC
1 ACAAATCCT-ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
*
20696480 A-ATAATCCTATCTCTCTGAAGTTGCAGTGGAGC-GAATTAAAGTT
1 ACA-AATCCTATCTCCCTGAAGTTGCAGTGGAGCAG-ATTAAAGTT
* * * * * * **
20696524 ACAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTCAAGAAA
1 ACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TT
* * * * * * * * * *
20696569 ACAAGTCTTATCCCCCTGATGTTACAGTGGGGTAGACTGAAGATG
1 ACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-TT
* * * **
20696614 GCGAATCGTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
1 ACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * *
20696658 A-ATAATCCTATCTCCTTGAAGTTACAGTGGAGAAGATTAAAGTT
1 ACA-AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
*
20696702 ACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAGTT
1 ACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * * * * **
20696746 ACAAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGAAGAA
1 ACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * * * * *
20696790 AGCAAGTCTTATCCCCCTGAAGTTGCAGTGG-GACAAACTGAAGATG
1 A-CAAATCCTATCTCCCTGAAGTTGCAGTGGAG-CAGATTAAAG-TT
* * * **
20696836 GCAAATCCTATCTCCCTGAAGTTGTACTGGAGCAGATTAAAGCC
1 ACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* *
20696880 A-ATAATCCTATCTCCCT-AAGGTTTCAGTGGAGCGGATTAAAGTT
1 ACA-AATCCTATCTCCCTGAA-GTTGCAGTGGAGCAGATTAAAGTT
* * * * * * *
20696924 ACAAGTCTTAT-TCCCCTAAAGTTGCAGTGGGGCAGACTGAAGAT
1 ACAAATCCTATCT-CCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * * * * * *
20696968 AGCGAAT-CTCATTTTCCTGAAGCT-CTAGTGAAACAAATTAAAACTAT
1 A-CAAATCCT-ATCTCCCTGAAGTTGC-AGTGGAGCAGATT-AAAGT-T
* * * * * * * * *
20697015 AAATCACAGATCTTATTTCTCTAAAGTTGTAGTAGAGTAGA-T-CA-TG
1 --A-CA-A-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* **
20697061 ACAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC
1 ACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * * *
20697105 A-ATAATCCTATCTCCTTGAAGTTGAAGTAGAGCGGATTGAAG-T
1 ACA-AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * * * * * *
20697148 -GAAGTCTTATCTCCTTGAAGTTGCAGTGGAGTAGACTGAAGAT
1 ACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * ** *
20697191 AGCAAAT-CTCATCTCCCTGAAGATGGTAGTGGAATAGATCAAAGCTAT
1 A-CAAATCCT-ATCTCCCTGAAG-TTGCAGTGGAGCAGATTAAAG-T-T
** * * * * * *
20697239 AAATCATAAGATTTTATCTCTCTAAAGTTACAGTAGAGCAGATCACA--T
1 --A-C--AA-ATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* **
20697287 -CAAA-CCTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTAAAAAT
1 ACAAATCC-TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * ** * *
20697330 ACCAATCTTATCTCCCTGAAGTTGCAGTGGAGTGGATTGAAGCT
1 ACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * *
20697374 ACTAATCCTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAAGCT
1 ACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
* * * *
20697418 ACTAATCCTATCTCCTTGAA-TTAGCAGCGAAGCAGAT
1 ACAAATCCTATCTCCCTGAAGTT-GCAGTGGAGCAGAT
20697455 GGAAGATACC
Statistics
Matches: 831, Mismatches: 220, Indels: 116
0.71 0.19 0.10
Matches are distributed among these distances:
41 53 0.06
42 36 0.04
43 14 0.02
44 417 0.50
45 230 0.28
46 23 0.03
47 2 0.00
48 3 0.00
49 2 0.00
50 4 0.00
51 18 0.02
52 16 0.02
53 12 0.01
54 1 0.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.28
Consensus pattern (44 bp):
ACAAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTT
Done.