Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 7 of 170
Found at i:2029327 original size:46 final size:45
Alignment explanation
Indices: 2029259--2029455 Score: 245
Period size: 46 Copynumber: 4.6 Consensus size: 45
2029249 TTGGAGTACT
* *
2029259 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
* *
2029305 TCTGATTAAGTGACACAGTGAT-A-----AG--T-GCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
2029341 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-TTAGCTACACTTA
2029387 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
*
2029432 TCTGATC-AGGGACAAA-TGATAAGT
1 TCTGATCAAGTGACAAAGTGATAAGT
2029456 TATCATACGT
Statistics
Matches: 132, Mismatches: 9, Indels: 23
0.80 0.05 0.14
Matches are distributed among these distances:
36 29 0.22
37 2 0.02
40 2 0.02
42 2 0.02
43 8 0.06
44 8 0.06
45 22 0.17
46 59 0.45
ACGTcount: A:0.35, C:0.15, G:0.22, T:0.29
Consensus pattern (45 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCTTAGCTACACTTA
Found at i:2029336 original size:36 final size:36
Alignment explanation
Indices: 2029295--2029367 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
2029285 GGTAGCTTTA
* * *
2029295 GCTACACTTATCTGATTAAGTGACACAGTGATAAGT
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
2029331 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
1 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
2029367 G
1 G
2029368 GTAGCTTTAG
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.36, C:0.16, G:0.21, T:0.27
Consensus pattern (36 bp):
GCTACACTTATCTGATCAAGAGACAAAGTGATAAGT
Found at i:2029398 original size:82 final size:82
Alignment explanation
Indices: 2029259--2029413 Score: 283
Period size: 82 Copynumber: 1.9 Consensus size: 82
2029249 TTGGAGTACT
* * *
2029259 TCTGATCAAGAGATAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATTAAGTGACACAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
2029324 GATAAGTGCTACACTTA
66 GATAAGTGCTACACTTA
2029341 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
2029406 GATAAGTG
66 GATAAGTG
2029414 GTAGCTTAGC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
82 70 1.00
ACGTcount: A:0.35, C:0.14, G:0.22, T:0.29
Consensus pattern (82 bp):
TCTGATCAAGAGACAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
GATAAGTGCTACACTTA
Found at i:2031325 original size:23 final size:24
Alignment explanation
Indices: 2031298--2031344 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
2031288 TGCATAATAT
2031298 TTAAATATT-TAAAAATTTGATTA
1 TTAAATATTCTAAAAATTTGATTA
**
2031321 TTAAATATTCTTGAAATTTGATTA
1 TTAAATATTCTAAAAATTTGATTA
2031345 AAATTATAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 9 0.43
24 12 0.57
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (24 bp):
TTAAATATTCTAAAAATTTGATTA
Found at i:2036019 original size:14 final size:14
Alignment explanation
Indices: 2036000--2036030 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
2035990 TGATTGTTTT
*
2036000 TAATCTAAATTTAC
1 TAATCTAAATTAAC
2036014 TAATCTAAATTAAC
1 TAATCTAAATTAAC
2036028 TAA
1 TAA
2036031 GAACGCGACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.48, C:0.13, G:0.00, T:0.39
Consensus pattern (14 bp):
TAATCTAAATTAAC
Found at i:2050859 original size:68 final size:68
Alignment explanation
Indices: 2050778--2050918 Score: 246
Period size: 68 Copynumber: 2.1 Consensus size: 68
2050768 TTTGAAAAAC
* * *
2050778 CCACTGCCTAGTTTAAAATGTATCCGTAAGTACAGACTACGTTTCTTTTTACTCTCAAAATGGCT
1 CCACTGCCCAGTTTAAAACGTATACGTAAGTACAGACTACGTTTCTTTTTACTCTCAAAATGGCT
2050843 TTT
66 TTT
*
2050846 CCACTGCCCAGTTTAAAACGTATACGTAAGTACAGACTATGTTTCTTTTTACTCTCAAAATGGCT
1 CCACTGCCCAGTTTAAAACGTATACGTAAGTACAGACTACGTTTCTTTTTACTCTCAAAATGGCT
2050911 TTT
66 TTT
2050914 CCACT
1 CCACT
2050919 TATGAAAGTT
Statistics
Matches: 69, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
68 69 1.00
ACGTcount: A:0.27, C:0.23, G:0.13, T:0.37
Consensus pattern (68 bp):
CCACTGCCCAGTTTAAAACGTATACGTAAGTACAGACTACGTTTCTTTTTACTCTCAAAATGGCT
TTT
Found at i:2057168 original size:19 final size:21
Alignment explanation
Indices: 2057146--2057184 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 21
2057136 CAGAAAAGTT
2057146 AATTTTAAA-TATTT-TTATA
1 AATTTTAAATTATTTGTTATA
2057165 AATTTTAAATTATTTGTTAT
1 AATTTTAAATTATTTGTTAT
2057185 CATGACATAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 9 0.50
20 5 0.28
21 4 0.22
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (21 bp):
AATTTTAAATTATTTGTTATA
Found at i:2058559 original size:24 final size:24
Alignment explanation
Indices: 2058531--2058582 Score: 59
Period size: 24 Copynumber: 2.2 Consensus size: 24
2058521 TTAGTAGGTC
*
2058531 AAATAAACCATGCTAATAAATACT
1 AAATAAACCATACTAATAAATACT
* ** *
2058555 AAATATATTATACTAATAAATGCT
1 AAATAAACCATACTAATAAATACT
2058579 AAAT
1 AAAT
2058583 CTTCTAGAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.54, C:0.12, G:0.04, T:0.31
Consensus pattern (24 bp):
AAATAAACCATACTAATAAATACT
Found at i:2064967 original size:29 final size:28
Alignment explanation
Indices: 2064912--2064967 Score: 85
Period size: 29 Copynumber: 2.0 Consensus size: 28
2064902 CCTTTTTTGT
*
2064912 TTTTTAATAAATGGCCCAACATTTTTAC
1 TTTTTAATAAATGGCCCAACATGTTTAC
*
2064940 TTTTTACATAAATGGCCCAATATGTTTA
1 TTTTTA-ATAAATGGCCCAACATGTTTA
2064968 TACTTCTTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.32, C:0.16, G:0.09, T:0.43
Consensus pattern (28 bp):
TTTTTAATAAATGGCCCAACATGTTTAC
Found at i:2064992 original size:21 final size:21
Alignment explanation
Indices: 2064966--2065008 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
2064956 CCAATATGTT
2064966 TATACTTCTTCTTCTTCTCCA
1 TATACTTCTTCTTCTTCTCCA
2064987 TATACTTCTTCTTCTTCTCCA
1 TATACTTCTTCTTCTTCTCCA
2065008 T
1 T
2065009 CCCAAGAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.33, G:0.00, T:0.53
Consensus pattern (21 bp):
TATACTTCTTCTTCTTCTCCA
Found at i:2067179 original size:40 final size:41
Alignment explanation
Indices: 2067097--2067197 Score: 116
Period size: 40 Copynumber: 2.5 Consensus size: 41
2067087 TGAGACTGAC
* * * *
2067097 ACTGAACTGAATTATGGAA-TATTGAATATTGTATTTGAGT
1 ACTGAATTGAATTATGAAATTACTGAATATTGTATATGAGT
* *
2067137 ACTGAATTGAATTGTGAAATTACTGAATATTGT-TATGTGT
1 ACTGAATTGAATTATGAAATTACTGAATATTGTATATGAGT
* *
2067177 ACTGCATTGAACTATGAAATT
1 ACTGAATTGAATTATGAAATT
2067198 GTTGAAGTAA
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
40 39 0.76
41 12 0.24
ACGTcount: A:0.35, C:0.07, G:0.19, T:0.40
Consensus pattern (41 bp):
ACTGAATTGAATTATGAAATTACTGAATATTGTATATGAGT
Found at i:2067495 original size:39 final size:43
Alignment explanation
Indices: 2067408--2067501 Score: 115
Period size: 45 Copynumber: 2.2 Consensus size: 43
2067398 CCGACTGCTA
*
2067408 TTACTGTTACCGATTCAACACTTTGTGTGTCAAATACTATTACCG
1 TTACTGTTACAGATTCAACACTTTGTGTGTCAAATACTATT--CG
* *
2067453 TTACTGTTACAGATTCAGCACTTTGTGTGT-AGA-A-TATT-G
1 TTACTGTTACAGATTCAACACTTTGTGTGTCAAATACTATTCG
2067492 TTACTGTTAC
1 TTACTGTTAC
2067502 TGCTACCATT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
39 11 0.24
42 4 0.09
43 1 0.02
44 2 0.04
45 28 0.61
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40
Consensus pattern (43 bp):
TTACTGTTACAGATTCAACACTTTGTGTGTCAAATACTATTCG
Found at i:2069263 original size:24 final size:24
Alignment explanation
Indices: 2069235--2069292 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 24
2069225 TAAAATATAA
2069235 AAAATATTTAA-TAATAAAAGTATT
1 AAAATATTTAATTAATAAAAGTA-T
* **
2069259 AAAATA-GTAATTAATGTAAGTAT
1 AAAATATTTAATTAATAAAAGTAT
2069282 AAAATATTTAA
1 AAAATATTTAA
2069293 AAAATTATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
23 10 0.36
24 18 0.64
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (24 bp):
AAAATATTTAATTAATAAAAGTAT
Found at i:2073556 original size:19 final size:19
Alignment explanation
Indices: 2073529--2073570 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
2073519 CATGCTTTCT
* *
2073529 ATTCACATTTTCATATTCA
1 ATTCACATTTTCAAATTAA
*
2073548 ATTCGCATTTTCAAATTAA
1 ATTCACATTTTCAAATTAA
2073567 ATTC
1 ATTC
2073571 TACAATCATG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.33, C:0.19, G:0.02, T:0.45
Consensus pattern (19 bp):
ATTCACATTTTCAAATTAA
Found at i:2073852 original size:69 final size:66
Alignment explanation
Indices: 2073737--2073865 Score: 177
Period size: 69 Copynumber: 1.9 Consensus size: 66
2073727 ACCTGATCAG
* * * *
2073737 TATAGGACACATAAGTGCCTGATACGACACACGAGGTGCCTGAAATATGACACATAAAGTTTCTG
1 TATACGACACATAAGTGCCTGATACGACACACAAAGTGCCTAAAATATGACACATAAAGTTTCTG
2073802 A
66 A
* *
2073803 TATACGACACATAAAGTGCCTGAAATACGACACATAAAGTTCCTAAAATATGACACATAAAGT
1 TATACGACACAT-AAGTGCCTG--ATACGACACACAAAGTGCCTAAAATATGACACATAAAGT
2073866 GCCTAATCGG
Statistics
Matches: 54, Mismatches: 6, Indels: 3
0.86 0.10 0.05
Matches are distributed among these distances:
66 11 0.20
67 9 0.17
69 34 0.63
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.22
Consensus pattern (66 bp):
TATACGACACATAAGTGCCTGATACGACACACAAAGTGCCTAAAATATGACACATAAAGTTTCTG
A
Found at i:2073871 original size:23 final size:23
Alignment explanation
Indices: 2073742--2073869 Score: 145
Period size: 23 Copynumber: 5.7 Consensus size: 23
2073732 ATCAGTATAG
2073742 GACACAT-AAGTGCCTG--ATAC
1 GACACATAAAGTGCCTGAAATAC
** * *
2073762 GACACACGAGGTGCCTGAAATAT
1 GACACATAAAGTGCCTGAAATAC
** *
2073785 GACACATAAAGTTTCTGATATAC
1 GACACATAAAGTGCCTGAAATAC
2073808 GACACATAAAGTGCCTGAAATAC
1 GACACATAAAGTGCCTGAAATAC
* * *
2073831 GACACATAAAGTTCCTAAAATAT
1 GACACATAAAGTGCCTGAAATAC
2073854 GACACATAAAGTGCCT
1 GACACATAAAGTGCCT
2073870 AATCGGCATA
Statistics
Matches: 88, Mismatches: 17, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
20 6 0.07
21 8 0.09
23 74 0.84
ACGTcount: A:0.40, C:0.21, G:0.17, T:0.22
Consensus pattern (23 bp):
GACACATAAAGTGCCTGAAATAC
Found at i:2077711 original size:13 final size:14
Alignment explanation
Indices: 2077681--2077727 Score: 51
Period size: 13 Copynumber: 3.3 Consensus size: 14
2077671 TGAAATGGTC
2077681 TAAAATATTAAATA
1 TAAAATATTAAATA
* *
2077695 TAAAA-ATTAACTT
1 TAAAATATTAAATA
2077708 TAAAATAGTTAAAATA
1 TAAAATA-TT-AAATA
2077724 TAAA
1 TAAA
2077728 TAAAATAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
13 11 0.42
14 6 0.23
15 2 0.08
16 7 0.27
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (14 bp):
TAAAATATTAAATA
Found at i:2086059 original size:50 final size:50
Alignment explanation
Indices: 2085995--2086570 Score: 384
Period size: 50 Copynumber: 11.5 Consensus size: 50
2085985 TTTGGAAAGT
* * * *
2085995 AAGATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCTGGGAGGC
* * ** * ** * *
2086045 AAGATTTACCGTTGTGGCTTTAATCTGTTCCACTACACCGCCTGGGAGGT
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCTGGGAGGC
* * * * *
2086095 AAGATT-AGCTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCAGGGAGGC
1 AAGATTCA-CCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCTGGGAGGC
* ** ** * *
2086145 AA-AGTTCACCGTTGTGGCTTTAATCTGTTCCACTGCACCGTCTGGGAAGT
1 AAGA-TTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCTGGGAGGC
* * * * ** **
2086195 AAGATTCGCTGCTGTAGCTTTAATCTTTTTAACCCCAATGTCAAGGAGGC
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCTGGGAGGC
* * ** ** * *
2086245 AAGATTCACCATTGTGGCTTTAATCTATTCCACTGCACCGCCTGGGAGGT
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCTGGGAGGC
* * * * *
2086295 AAGATTCACTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCAGGGAGGC
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCTGGGAGGC
* * ** ** * *
2086345 AAGATTCACCATTGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAGGT
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCTGGGAGGC
* * * * * *
2086395 AAGATTCGCTGCTATAGCTTTAATCTTTTTAACCGCAATGT-TAGGGAGGC
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCT-GGGAGGC
* * ** **** * * *
2086445 AAGATTCACCGTTATGGCTTTAATCTGTTCCACTGCACCACCTAGGAAGT
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCTGGGAGGC
*** * * * * * *
2086495 AAGATTCGTTGCTGTAGCTTTAATCTTTTTAACTGTAGTGTCGGGGAAGC
1 AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCTGGGAGGC
2086545 AAGATTCACCGTTGTGGCTTTAATCT
1 AAGATTCACCGTTGTGGCTTTAATCT
2086571 GCTCCACTGC
Statistics
Matches: 374, Mismatches: 146, Indels: 12
0.70 0.27 0.02
Matches are distributed among these distances:
49 3 0.01
50 368 0.98
51 3 0.01
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (50 bp):
AAGATTCACCGTTGTGGCTTTAATCTTTTTAACTGCAATGTCTGGGAGGC
Found at i:2086166 original size:100 final size:100
Alignment explanation
Indices: 2085993--2086601 Score: 923
Period size: 100 Copynumber: 6.1 Consensus size: 100
2085983 CTTTTGGAAA
* * * * * *
2085993 GTAAGATTCGCTGTTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTTACCGTT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCGTT
*
2086058 GTGGCTTTAATCTGTTCCACTACACCGCCTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
*
2086093 GTAAGATTAGCTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAA-AGTTCACCGT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAAGA-TTCACCGT
* *
2086157 TGTGGCTTTAATCTGTTCCACTGCACCGTCTGGGAA
65 TGTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* * *
2086193 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACCCCAATGTCAAGGAGGCAAGATTCACCATT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCGTT
*
2086258 GTGGCTTTAATCTATTCCACTGCACCGCCTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* *
2086293 GTAAGATTCACTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCATT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCGTT
2086358 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* *
2086393 GTAAGATTCGCTGCTATAGCTTTAATCTTTTTAACCGCAATGTTAGGGAGGCAAGATTCACCGTT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCGTT
* * * *
2086458 ATGGCTTTAATCTGTTCCACTGCACCACCTAGGAA
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
* * * * * *
2086493 GTAAGATTCGTTGCTGTAGCTTTAATCTTTTTAACTGTAGTGTCGGGGAAGCAAGATTCACCGTT
1 GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCGTT
* *
2086558 GTGGCTTTAATCTGCTCCACTGCACTGCCTGGGAG
66 GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
2086593 AGTAAGATT
1 -GTAAGATT
2086602 TCAAATTTTC
Statistics
Matches: 463, Mismatches: 43, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
99 1 0.00
100 453 0.98
101 9 0.02
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.32
Consensus pattern (100 bp):
GTAAGATTCGCTGCTGTAGCTTTAATCTTTTTAACCGCAATGTCAGGGAGGCAAGATTCACCGTT
GTGGCTTTAATCTGTTCCACTGCACCGCCTGGGAG
Found at i:2089381 original size:14 final size:14
Alignment explanation
Indices: 2089362--2089389 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
2089352 CAGAGGTTTC
2089362 ATTCCTAAAATCTT
1 ATTCCTAAAATCTT
2089376 ATTCCTAAAATCTT
1 ATTCCTAAAATCTT
2089390 GAACTGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.00, T:0.43
Consensus pattern (14 bp):
ATTCCTAAAATCTT
Found at i:2089944 original size:21 final size:21
Alignment explanation
Indices: 2089903--2089945 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
2089893 AATAAAGTAG
*
2089903 ATTATATATTATTTTTATAGT
1 ATTATATATTATATTTATAGT
2089924 ATTATATATTATGATTT-TAGT
1 ATTATATATTAT-ATTTATAGT
2089945 A
1 A
2089946 AATTCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (21 bp):
ATTATATATTATATTTATAGT
Found at i:2090264 original size:50 final size:49
Alignment explanation
Indices: 2090169--2090265 Score: 117
Period size: 49 Copynumber: 2.0 Consensus size: 49
2090159 TTACAACATT
* * *
2090169 ATTCCATTTAACCAAACACAAGAATACTATTACAGTTTTATTCCATTCC
1 ATTCCATTCAACCAAACACAAGAATACTATTACAGATCTATTCCATTCC
*
2090218 ATTCCATTCAACCAAACA-ATTGAATTACTATTAC-GCATCTATTCCATT
1 ATTCCATTCAACCAAACACA-AGAA-TACTATTACAG-ATCTATTCCATT
2090266 ACAGCTCTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
48 1 0.02
49 21 0.51
50 19 0.46
ACGTcount: A:0.36, C:0.25, G:0.04, T:0.35
Consensus pattern (49 bp):
ATTCCATTCAACCAAACACAAGAATACTATTACAGATCTATTCCATTCC
Found at i:2090274 original size:16 final size:16
Alignment explanation
Indices: 2090255--2090302 Score: 87
Period size: 16 Copynumber: 3.0 Consensus size: 16
2090245 CTATTACGCA
2090255 TCTATTCCATTACAGC
1 TCTATTCCATTACAGC
*
2090271 TCTATTCCATTACACC
1 TCTATTCCATTACAGC
2090287 TCTATTCCATTACAGC
1 TCTATTCCATTACAGC
2090303 GAATCAAACG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.25, C:0.33, G:0.04, T:0.38
Consensus pattern (16 bp):
TCTATTCCATTACAGC
Found at i:2093647 original size:34 final size:35
Alignment explanation
Indices: 2093589--2093655 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
2093579 CAAACACTAG
* * *
2093589 AAAATATTTTCCTGTAAGTCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
*
2093624 AAAACATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
2093656 TATTTTACTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.43, C:0.13, G:0.10, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:2093944 original size:7 final size:7
Alignment explanation
Indices: 2093896--2094035 Score: 52
Period size: 7 Copynumber: 19.7 Consensus size: 7
2093886 ACTAGTTAAT
*
2093896 CTAAACT
1 CTAAACC
2093903 CTAAACC
1 CTAAACC
*
2093910 ATAAA-C
1 CTAAACC
2093916 CTAAACC
1 CTAAACC
*
2093923 CTAAAATC
1 CT-AAACC
*
2093931 TTAAACC
1 CTAAACC
2093938 CTAAACC
1 CTAAACC
* *
2093945 CTTAACA
1 CTAAACC
*
2093952 C-ATAACAT
1 CTA-AAC-C
2093960 CTAAACC
1 CTAAACC
*
2093967 TTAAACC
1 CTAAACC
*
2093974 C-CAACC
1 CTAAACC
*
2093980 TTTAAACC
1 -CTAAACC
*
2093988 ATAAACC
1 CTAAACC
* *
2093995 ATAAATC
1 CTAAACC
* *
2094002 ATAACCC
1 CTAAACC
2094009 CTAAACC
1 CTAAACC
*
2094016 CATAATCC
1 C-TAAACC
*
2094024 ATAAACC
1 CTAAACC
*
2094031 TTAAA
1 CTAAA
2094036 ATAGTAACTC
Statistics
Matches: 98, Mismatches: 27, Indels: 16
0.70 0.19 0.11
Matches are distributed among these distances:
6 9 0.09
7 70 0.71
8 18 0.18
9 1 0.01
ACGTcount: A:0.46, C:0.32, G:0.00, T:0.21
Consensus pattern (7 bp):
CTAAACC
Found at i:2094455 original size:40 final size:41
Alignment explanation
Indices: 2094405--2094557 Score: 168
Period size: 41 Copynumber: 3.8 Consensus size: 41
2094395 TTTTTTGCGG
* ****
2094405 CGCTTTTTCAAAAACACCACTAAA-AATAGAGCATTAGCGA
1 CGCTTCTTCAAAAACACCACTAAAGCCCCGAGCATTAGCGA
* * *
2094445 CGCTTCTTCAAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
1 CGCTTCTTCAAAAACACCACTAAAGCCCCGAGCATTAGCGA
*
2094486 CGCTT-TTCCAAAAA-AGCCGCTAAAGCCCCGAGCATTAGCGA
1 CGCTTCTT-CAAAAACA-CCACTAAAGCCCCGAGCATTAGCGA
* *
2094527 CGCTTCTTGAAAAACGCCACTAAAGCCCCGA
1 CGCTTCTTCAAAAACACCACTAAAGCCCCGA
2094558 AAACTCAAAA
Statistics
Matches: 95, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
40 23 0.24
41 70 0.74
42 2 0.02
ACGTcount: A:0.33, C:0.31, G:0.18, T:0.18
Consensus pattern (41 bp):
CGCTTCTTCAAAAACACCACTAAAGCCCCGAGCATTAGCGA
Found at i:2094490 original size:41 final size:41
Alignment explanation
Indices: 2094433--2094557 Score: 198
Period size: 41 Copynumber: 3.0 Consensus size: 41
2094423 ACTAAAAATA
2094433 GAGCATTAGCGACGCTTCTTCAAAAACGCCGCTAAAGCCCC
1 GAGCATTAGCGACGCTTCTTCAAAAACGCCGCTAAAGCCCC
* *
2094474 GAGCATTAGCGGCGCTT-TTCCAAAAAAGCCGCTAAAGCCCC
1 GAGCATTAGCGACGCTTCTT-CAAAAACGCCGCTAAAGCCCC
* *
2094515 GAGCATTAGCGACGCTTCTTGAAAAACGCCACTAAAGCCCC
1 GAGCATTAGCGACGCTTCTTCAAAAACGCCGCTAAAGCCCC
2094556 GA
1 GA
2094558 AAACTCAAAA
Statistics
Matches: 76, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
40 2 0.03
41 72 0.95
42 2 0.03
ACGTcount: A:0.30, C:0.32, G:0.21, T:0.17
Consensus pattern (41 bp):
GAGCATTAGCGACGCTTCTTCAAAAACGCCGCTAAAGCCCC
Found at i:2094656 original size:39 final size:39
Alignment explanation
Indices: 2094613--2094719 Score: 133
Period size: 40 Copynumber: 2.7 Consensus size: 39
2094603 TGGAAAACGT
2094613 CGCTAATGCTCATTTTTAGCGGCGTTTTCCAAAAAGCGC
1 CGCTAATGCTCATTTTTAGCGGCGTTTTCCAAAAAGCGC
* * **
2094652 CGCTAATACTCGATCTTTAGCGGCGTTTTTTAAAAAGCGC
1 CGCTAATGCTC-ATTTTTAGCGGCGTTTTCCAAAAAGCGC
* * * *
2094692 CGGTAATGCTTATTATTAGCGGTGTTTT
1 CGCTAATGCTCATTTTTAGCGGCGTTTT
2094720 TTTATCCAAA
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
39 24 0.42
40 33 0.58
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (39 bp):
CGCTAATGCTCATTTTTAGCGGCGTTTTCCAAAAAGCGC
Found at i:2094723 original size:40 final size:38
Alignment explanation
Indices: 2094587--2094721 Score: 128
Period size: 39 Copynumber: 3.4 Consensus size: 38
2094577 GGGCTTAGGT
* ** *
2094587 TTTTTGCGGCGCTTTTTGGAAAA-CGTCGCTAATGCTCA
1 TTTTAGCGGCG-TTTTTTAAAAAGCGCCGCTAATGCTCA
** *
2094625 TTTTTAGCGGCGTTTTCCAAAAAGCGCCGCTAATACTCGA
1 -TTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTC-A
* *
2094665 TCTTTAGCGGCGTTTTTTAAAAAGCGCCGGTAATGCTTA
1 T-TTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCA
*
2094704 TTATTAGCGGTGTTTTTT
1 TT-TTAGCGGCGTTTTTT
2094722 TATCCAAACG
Statistics
Matches: 80, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
38 9 0.11
39 39 0.49
40 32 0.40
ACGTcount: A:0.21, C:0.19, G:0.22, T:0.38
Consensus pattern (38 bp):
TTTTAGCGGCGTTTTTTAAAAAGCGCCGCTAATGCTCA
Found at i:2096586 original size:18 final size:19
Alignment explanation
Indices: 2096554--2096602 Score: 64
Period size: 19 Copynumber: 2.5 Consensus size: 19
2096544 AAACATATAA
*
2096554 ATTTTGAAATGTTTATAAA-T
1 ATTTTG-AAT-TTTAAAAATT
2096574 ATTTTGAATTTTAAAAATT
1 ATTTTGAATTTTAAAAATT
2096593 ATTTTGAATT
1 ATTTTGAATT
2096603 ATTTTGTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 7 0.26
19 14 0.52
20 6 0.22
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (19 bp):
ATTTTGAATTTTAAAAATT
Found at i:2104955 original size:21 final size:21
Alignment explanation
Indices: 2104929--2104982 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
2104919 ACCCGATTAA
*
2104929 TAATATATATAAAT-TTATGTC
1 TAATATATATAAATGTGATG-C
* *
2104950 TAATATATGT-GATGTGATGC
1 TAATATATATAAATGTGATGC
2104970 TAATATATATAAA
1 TAATATATATAAA
2104983 GAAAATTAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
20 12 0.46
21 14 0.54
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.43
Consensus pattern (21 bp):
TAATATATATAAATGTGATGC
Found at i:2115799 original size:118 final size:118
Alignment explanation
Indices: 2115668--2115883 Score: 301
Period size: 118 Copynumber: 1.8 Consensus size: 118
2115658 TCTCCTATTG
* * * * * * *
2115668 CTTGGTTTTTTGCTTTGAATTTTCTATAATA-TATATATA-CGTATTTTAATTTTAAATCATTTA
1 CTTGGATTTTTGCTTTGAATTTTCTA-AAAAGAATATATAGC-CATTTTAAATTTAAATAATATA
2115731 TTTAGAGGGTTGGATTTTATTTGGGTTGATTTAGACGGAAAATAATCTTTTTTTT
64 TTTAGAGGGTTGGATTTTATTTGGGTTGATTTAGACGGAAAATAATCTTTTTTTT
*
2115786 CTTGGATTTTTGCTTTGAATTTTCTAAAAAGAATATGTAGCCATTTTAAATTTAAATAATATATT
1 CTTGGATTTTTGCTTTGAATTTTCTAAAAAGAATATATAGCCATTTTAAATTTAAATAATATATT
** *
2115851 TTTAGGGTTTGATTTTATTTGGGTTGATTTAGA
66 TAGAGGGTTGGATTTTATTTGGGTTGATTTAGA
2115884 ATTTGTTATA
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
117 3 0.04
118 81 0.95
119 1 0.01
ACGTcount: A:0.28, C:0.06, G:0.16, T:0.51
Consensus pattern (118 bp):
CTTGGATTTTTGCTTTGAATTTTCTAAAAAGAATATATAGCCATTTTAAATTTAAATAATATATT
TAGAGGGTTGGATTTTATTTGGGTTGATTTAGACGGAAAATAATCTTTTTTTT
Found at i:2118728 original size:3 final size:3
Alignment explanation
Indices: 2118722--2118756 Score: 61
Period size: 3 Copynumber: 11.7 Consensus size: 3
2118712 ATTTAAGTTA
*
2118722 ATT ATT ATT ATT ATT ATT ATT ATT ACT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
2118757 ACTAATATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (3 bp):
ATT
Found at i:2124875 original size:21 final size:21
Alignment explanation
Indices: 2124828--2124869 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
2124818 ACAATTTTGT
*
2124828 AATTAAAGTGAAATTAAAACA
1 AATTAAAGTAAAATTAAAACA
2124849 AATTAAAGTAAAATTAAAACA
1 AATTAAAGTAAAATTAAAACA
2124870 CTTTAATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.64, C:0.05, G:0.07, T:0.24
Consensus pattern (21 bp):
AATTAAAGTAAAATTAAAACA
Found at i:2125791 original size:24 final size:25
Alignment explanation
Indices: 2125738--2125795 Score: 73
Period size: 24 Copynumber: 2.4 Consensus size: 25
2125728 TTAGCTCAAG
*
2125738 AGAGCTTACCGATATTCAGCTTGCA
1 AGAGCTTACCGATATTCAGCTCGCA
* * *
2125763 TGAGCTTACC-ATATTTAGCTCGGA
1 AGAGCTTACCGATATTCAGCTCGCA
2125787 AGAGCTTAC
1 AGAGCTTAC
2125796 TGTTTATAGC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 19 0.68
25 9 0.32
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (25 bp):
AGAGCTTACCGATATTCAGCTCGCA
Found at i:2132210 original size:18 final size:19
Alignment explanation
Indices: 2132168--2132204 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
2132158 TTTAATTTTT
2132168 AAATTTTAAAAGTTAAAAA
1 AAATTTTAAAAGTTAAAAA
2132187 AAATTTTAAAA-TTAAAAA
1 AAATTTTAAAAGTTAAAAA
2132205 TTATTTAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (19 bp):
AAATTTTAAAAGTTAAAAA
Found at i:2133208 original size:70 final size:71
Alignment explanation
Indices: 2133074--2133214 Score: 266
Period size: 70 Copynumber: 2.0 Consensus size: 71
2133064 CAGAAACTAC
2133074 ATTACCTTAAAAATGTCAAATTGGGTAAAAAAAAAAAACTATGAGAGCATTTCAAAATGGCCTAC
1 ATTACCTTAAAAATGTCAAATTGGGTAAAAAAAAAAAACTATGAGAGCATTTCAAAATGGCCTAC
2133139 TTAAAG
66 TTAAAG
*
2133145 ATTACCTTAAAAATGTCAAATTGGGT-AAAAAAAAAAACTATGAGAGCATTTCAAAATTGCCTAC
1 ATTACCTTAAAAATGTCAAATTGGGTAAAAAAAAAAAACTATGAGAGCATTTCAAAATGGCCTAC
2133209 TTAAAG
66 TTAAAG
2133215 CAAGAACAGT
Statistics
Matches: 69, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
70 43 0.62
71 26 0.38
ACGTcount: A:0.48, C:0.13, G:0.13, T:0.26
Consensus pattern (71 bp):
ATTACCTTAAAAATGTCAAATTGGGTAAAAAAAAAAAACTATGAGAGCATTTCAAAATGGCCTAC
TTAAAG
Found at i:2136334 original size:18 final size:17
Alignment explanation
Indices: 2136307--2136340 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
2136297 TTGAATAAAA
2136307 GAAAGAAATACTGAAAT
1 GAAAGAAATACTGAAAT
2136324 GAAAGGAAATACTGAAA
1 GAAA-GAAATACTGAAA
2136341 GACTGAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.59, C:0.06, G:0.21, T:0.15
Consensus pattern (17 bp):
GAAAGAAATACTGAAAT
Found at i:2136991 original size:30 final size:31
Alignment explanation
Indices: 2136936--2137001 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 31
2136926 ATAGTTTATT
* *
2136936 ATTTTTATAATTTTTAAATGATTAAATTA-A
1 ATTTTTATAATTTTTAAAGGATTAAAATATA
* * *
2136966 ATTTTTATCATTTTTATAGGTTTAAAATATA
1 ATTTTTATAATTTTTAAAGGATTAAAATATA
2136997 ATTTT
1 ATTTT
2137002 ATATTTACTA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 24 0.80
31 6 0.20
ACGTcount: A:0.38, C:0.02, G:0.05, T:0.56
Consensus pattern (31 bp):
ATTTTTATAATTTTTAAAGGATTAAAATATA
Found at i:2140937 original size:13 final size:13
Alignment explanation
Indices: 2140919--2140947 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
2140909 CCACTTTTCT
2140919 TTGTAATATTTTA
1 TTGTAATATTTTA
2140932 TTGTAATATTTTA
1 TTGTAATATTTTA
2140945 TTG
1 TTG
2140948 AAAGATGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.10, T:0.62
Consensus pattern (13 bp):
TTGTAATATTTTA
Found at i:2144974 original size:19 final size:19
Alignment explanation
Indices: 2144946--2145038 Score: 123
Period size: 19 Copynumber: 4.8 Consensus size: 19
2144936 AATTTTTGAG
*
2144946 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
2144965 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
2144984 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
2145003 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
2145022 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
2145039 GATTTAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
19 54 0.82
20 12 0.18
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:2146423 original size:98 final size:98
Alignment explanation
Indices: 2146309--2146505 Score: 358
Period size: 98 Copynumber: 2.0 Consensus size: 98
2146299 TTAAAAATAA
* *
2146309 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
2146374 TTAAATATTGGATAAGTGAATGTTCTTTTAAAG
66 TTAAATATTGGATAAGTGAATGTTCTTTTAAAG
2146407 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
* *
2146472 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATATTGGATAAGTGAATGTTCTTTTAAAG
2146505 T
1 T
2146506 TTTATTGTAC
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
98 95 1.00
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATATTGGATAAGTGAATGTTCTTTTAAAG
Found at i:2147679 original size:24 final size:25
Alignment explanation
Indices: 2147643--2147696 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
2147633 ATGTTATTGG
*
2147643 ATTATTGATTTAATATAAAT-ATATA
1 ATTATTGATTTAACATAAATAAT-TA
*
2147668 ATTATT-ATTTAACATATATAATTA
1 ATTATTGATTTAACATAAATAATTA
2147692 ATTAT
1 ATTAT
2147697 AATATTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (25 bp):
ATTATTGATTTAACATAAATAATTA
Found at i:2165227 original size:14 final size:14
Alignment explanation
Indices: 2165208--2165237 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
2165198 ATTTCTTTAG
2165208 TTTATTTTACTTAC
1 TTTATTTTACTTAC
*
2165222 TTTATTTTATTTAC
1 TTTATTTTACTTAC
2165236 TT
1 TT
2165238 AATAATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTATTTTACTTAC
Found at i:2169477 original size:30 final size:29
Alignment explanation
Indices: 2169443--2169505 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 29
2169433 TCAAGTAGGG
*
2169443 TTAAATCCAAT-TATTATAATTCTATATTTT
1 TTAAATCC-ATGTATGATAATTCTAT-TTTT
*
2169473 TTAAATGCATGTATGATAATTCTATTTTT
1 TTAAATCCATGTATGATAATTCTATTTTT
2169502 TTAA
1 TTAA
2169506 TAAAACAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
29 10 0.33
30 20 0.67
ACGTcount: A:0.35, C:0.08, G:0.05, T:0.52
Consensus pattern (29 bp):
TTAAATCCATGTATGATAATTCTATTTTT
Found at i:2176104 original size:23 final size:24
Alignment explanation
Indices: 2176058--2176109 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
2176048 ATAAAATTAT
* *
2176058 TTAATAAATATATTTTTTTGAATAA
1 TTAATAAATATA-TTATTTAAATAA
*
2176083 TTAATAAATATA-TATTTAAATAG
1 TTAATAAATATATTATTTAAATAA
2176106 TTAA
1 TTAA
2176110 AACTATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 12 0.50
25 12 0.50
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
TTAATAAATATATTATTTAAATAA
Found at i:2176503 original size:14 final size:14
Alignment explanation
Indices: 2176484--2176526 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
2176474 ACTTAAATTC
2176484 AATACTTAATTTTT
1 AATACTTAATTTTT
2176498 AATACTTAATTTTTT
1 AATACTTAA-TTTTT
* *
2176513 GACACTTAATTTTT
1 AATACTTAATTTTT
2176527 TAATCTATCA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 14 0.54
15 12 0.46
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (14 bp):
AATACTTAATTTTT
Found at i:2176519 original size:15 final size:15
Alignment explanation
Indices: 2176487--2176529 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
2176477 TAAATTCAAT
*
2176487 ACTTAA-TTTTTAAT
1 ACTTAATTTTTTAAC
*
2176501 ACTTAATTTTTTGAC
1 ACTTAATTTTTTAAC
2176516 ACTTAATTTTTTAA
1 ACTTAATTTTTTAA
2176530 TCTATCAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
14 6 0.24
15 19 0.76
ACGTcount: A:0.33, C:0.09, G:0.02, T:0.56
Consensus pattern (15 bp):
ACTTAATTTTTTAAC
Found at i:2176556 original size:3 final size:3
Alignment explanation
Indices: 2176548--2176572 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
2176538 ACATAACCTA
2176548 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
2176573 GTGATTGAGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:2203325 original size:30 final size:30
Alignment explanation
Indices: 2203279--2203402 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
2203269 TTTTATTATG
*
2203279 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
2203310 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
2203340 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
2203370 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
2203400 CCA
1 CCA
2203403 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:2203334 original size:15 final size:15
Alignment explanation
Indices: 2203289--2203396 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
2203279 CCAATATCTC
2203289 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
2203304 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
2203319 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
2203334 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
2203349 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
2203364 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
2203379 GATACCCATATCTTT
1 GATACCCATATCTTT
2203394 GAT
1 GAT
2203397 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:2210447 original size:30 final size:30
Alignment explanation
Indices: 2210401--2210524 Score: 203
Period size: 30 Copynumber: 4.1 Consensus size: 30
2210391 TTTTATTATG
*
2210401 CCAATATCTCGATACCCATATCTTTGACTTT
1 CCAATAT-TTGATACCCATATCTTTGACTTT
2210432 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
2210462 CCAATATTTGATACCCATATCTTTGACTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
* * *
2210492 CTATTATTTGATACCCATATCTTTGATTTT
1 CCAATATTTGATACCCATATCTTTGACTTT
2210522 CCA
1 CCA
2210525 TAAATATGGA
Statistics
Matches: 88, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
30 81 0.92
31 7 0.08
ACGTcount: A:0.26, C:0.24, G:0.06, T:0.44
Consensus pattern (30 bp):
CCAATATTTGATACCCATATCTTTGACTTT
Found at i:2210456 original size:15 final size:15
Alignment explanation
Indices: 2210411--2210518 Score: 78
Period size: 15 Copynumber: 7.2 Consensus size: 15
2210401 CCAATATCTC
2210411 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
2210426 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
2210441 GATACCCATATCTTT
1 GATACCCATATCTTT
** *
2210456 GACTTTCCA-ATATTT
1 GA-TACCCATATCTTT
2210471 GATACCCATATCTTT
1 GATACCCATATCTTT
** * *
2210486 GACTTTCTAT-TATTT
1 GA-TACCCATATCTTT
2210501 GATACCCATATCTTT
1 GATACCCATATCTTT
2210516 GAT
1 GAT
2210519 TTTCCATAAA
Statistics
Matches: 67, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
14 12 0.18
15 43 0.64
16 12 0.18
ACGTcount: A:0.26, C:0.22, G:0.07, T:0.44
Consensus pattern (15 bp):
GATACCCATATCTTT
Found at i:2212667 original size:24 final size:24
Alignment explanation
Indices: 2212652--2212705 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
2212642 AATTAAAGTC
2212652 AAATATATTATGCTAATAAATACT
1 AAATATATTATGCTAATAAATACT
* * *
2212676 AAATATATTATACTCATAAGTACT
1 AAATATATTATGCTAATAAATACT
2212700 AAATAT
1 AAATAT
2212706 TCTAGAAAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATACT
Found at i:2214736 original size:8 final size:8
Alignment explanation
Indices: 2214723--2214764 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
2214713 TATTAAAAAA
2214723 ATATTTTT
1 ATATTTTT
2214731 ATA-TTTT
1 ATATTTTT
*
2214738 ATATTTAT
1 ATATTTTT
*
2214746 ATATTTTA
1 ATATTTTT
2214754 ATTATTTTT
1 A-TATTTTT
2214763 AT
1 AT
2214765 GTGGATCACT
Statistics
Matches: 28, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
7 7 0.25
8 14 0.50
9 7 0.25
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (8 bp):
ATATTTTT
Found at i:2214743 original size:15 final size:16
Alignment explanation
Indices: 2214722--2214764 Score: 61
Period size: 15 Copynumber: 2.7 Consensus size: 16
2214712 GTATTAAAAA
2214722 AATATTTTTATATTTT
1 AATATTTTTATATTTT
*
2214738 -ATATTTATATATTTT
1 AATATTTTTATATTTT
2214753 AATTATTTTTAT
1 AA-TATTTTTAT
2214765 GTGGATCACT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
15 14 0.61
16 1 0.04
17 8 0.35
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (16 bp):
AATATTTTTATATTTT
Found at i:2236769 original size:6 final size:6
Alignment explanation
Indices: 2236760--2236797 Score: 76
Period size: 6 Copynumber: 6.3 Consensus size: 6
2236750 AACATATACA
2236760 TATATG TATATG TATATG TATATG TATATG TATATG TA
1 TATATG TATATG TATATG TATATG TATATG TATATG TA
2236798 CCTGCAATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.34, C:0.00, G:0.16, T:0.50
Consensus pattern (6 bp):
TATATG
Found at i:2243390 original size:30 final size:30
Alignment explanation
Indices: 2243333--2243390 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
2243323 GTTAATTTAA
**
2243333 AATTTAGTCTTTATATTTTTATTTTTTAGG
1 AATTTAGTCTTTATATTTTTAGATTTTAGG
2243363 AATTTAGTCTTGT-TATTTTTAGATTTTA
1 AATTTAGTCTT-TATATTTTTAGATTTTA
2243391 AAATCTAGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 24 0.96
31 1 0.04
ACGTcount: A:0.24, C:0.03, G:0.10, T:0.62
Consensus pattern (30 bp):
AATTTAGTCTTTATATTTTTAGATTTTAGG
Found at i:2249314 original size:19 final size:20
Alignment explanation
Indices: 2249274--2249317 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
2249264 ATTATTTGGA
* *
2249274 ATTTTTTAAAATTATTATAT
1 ATTTTTTAAAAATATTAAAT
2249294 ATTTTTTAAAAATA-TAAAT
1 ATTTTTTAAAAATATTAAAT
2249313 ATTTT
1 ATTTT
2249318 ATTTTTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 9 0.41
20 13 0.59
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (20 bp):
ATTTTTTAAAAATATTAAAT
Found at i:2249336 original size:19 final size:19
Alignment explanation
Indices: 2249306--2249363 Score: 59
Period size: 18 Copynumber: 3.1 Consensus size: 19
2249296 TTTTTAAAAA
2249306 TATAAATATTTT-ATTTTT
1 TATAAATATTTTAATTTTT
2249324 TATAAATATTTTTAA--TTT
1 TATAAATA-TTTTAATTTTT
*
2249342 TAAAAATTATTTTGAATTTTT
1 TATAAA-TATTTT-AATTTTT
2249363 T
1 T
2249364 TTAATTTTGT
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
18 20 0.61
19 8 0.24
20 1 0.03
21 4 0.12
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (19 bp):
TATAAATATTTTAATTTTT
Found at i:2249342 original size:18 final size:18
Alignment explanation
Indices: 2249306--2249361 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 18
2249296 TTTTTAAAAA
*
2249306 TATAAATA-TTTTATTTTT
1 TATAAATATTTTTA-ATTT
2249324 TATAAATATTTTTAATTT
1 TATAAATATTTTTAATTT
* *
2249342 TAAAAATTATTTTGAATTT
1 TATAAA-TATTTTTAATTT
2249361 T
1 T
2249362 TTTTAATTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 16 0.48
19 17 0.52
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TATAAATATTTTTAATTT
Found at i:2256667 original size:23 final size:23
Alignment explanation
Indices: 2256640--2256685 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
2256630 TTTGGATAAT
2256640 TGATAAATGTGATGTACGAGTGA
1 TGATAAATGTGATGTACGAGTGA
2256663 TGATAAATGTGATGTACGAGTGA
1 TGATAAATGTGATGTACGAGTGA
2256686 CGGATATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.04, G:0.30, T:0.30
Consensus pattern (23 bp):
TGATAAATGTGATGTACGAGTGA
Found at i:2262209 original size:97 final size:97
Alignment explanation
Indices: 2262043--2262238 Score: 383
Period size: 97 Copynumber: 2.0 Consensus size: 97
2262033 TGATTTATAT
*
2262043 TTATGCAACAAATACTTAGTTTCTTGTTCTCAATTATGTGTGCTTAATGTTTGGTTTAATATATC
1 TTATGCAACAAATACTTAGTTTCTTGTTCTCAATTATGTGTGCTTAATATTTGGTTTAATATATC
2262108 TAGATTAATGATCAATATTTGATGTGCTCAAA
66 TAGATTAATGATCAATATTTGATGTGCTCAAA
2262140 TTATGCAACAAATACTTAGTTTCTTGTTCTCAATTATGTGTGCTTAATATTTGGTTTAATATATC
1 TTATGCAACAAATACTTAGTTTCTTGTTCTCAATTATGTGTGCTTAATATTTGGTTTAATATATC
2262205 TAGATTAATGATCAATATTTGATGTGCTCAAA
66 TAGATTAATGATCAATATTTGATGTGCTCAAA
2262237 TT
1 TT
2262239 GGTGATTGAA
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 98 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (97 bp):
TTATGCAACAAATACTTAGTTTCTTGTTCTCAATTATGTGTGCTTAATATTTGGTTTAATATATC
TAGATTAATGATCAATATTTGATGTGCTCAAA
Found at i:2266646 original size:21 final size:22
Alignment explanation
Indices: 2266617--2266663 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
2266607 CAGAAGGAGT
*
2266617 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
2266639 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
2266660 GAGT
1 GAGT
2266664 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:2268504 original size:6 final size:7
Alignment explanation
Indices: 2268487--2268511 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
2268477 TAATATAATT
2268487 TTTTTTA
1 TTTTTTA
2268494 TTTTTTA
1 TTTTTTA
2268501 TTTTTTA
1 TTTTTTA
2268508 TTTT
1 TTTT
2268512 GTCATTAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTTA
Found at i:2269765 original size:13 final size:13
Alignment explanation
Indices: 2269742--2269833 Score: 123
Period size: 13 Copynumber: 7.0 Consensus size: 13
2269732 TGAGTTCGGT
2269742 TATATTGTTTTAA
1 TATATTGTTTTAA
2269755 TATACTT-TTTTAA
1 TATA-TTGTTTTAA
2269768 TATATTGTTTTAA
1 TATATTGTTTTAA
*
2269781 TATATTGTTATAA
1 TATATTGTTTTAA
* *
2269794 TATACTGTTATAA
1 TATATTGTTTTAA
2269807 TTATATTGTTTTAA
1 -TATATTGTTTTAA
*
2269821 TATAATGTTTTAA
1 TATATTGTTTTAA
2269834 CTTTTAAATT
Statistics
Matches: 71, Mismatches: 5, Indels: 6
0.87 0.06 0.07
Matches are distributed among these distances:
12 2 0.03
13 56 0.79
14 13 0.18
ACGTcount: A:0.34, C:0.02, G:0.07, T:0.58
Consensus pattern (13 bp):
TATATTGTTTTAA
Found at i:2269821 original size:27 final size:27
Alignment explanation
Indices: 2269762--2269865 Score: 95
Period size: 27 Copynumber: 3.9 Consensus size: 27
2269752 TAATATACTT
* *
2269762 TTTTAATATATTGTTTTAA-TATATTG
1 TTTTAATATACTGTTATAATTATATTG
*
2269788 TTATAATATACTGTTATAATTATATTG
1 TTTTAATATACTGTTATAATTATATTG
* * * **
2269815 TTTTAATATAATGTTTTAACTTTTA-AA
1 TTTTAATATACTGTTATAA-TTATATTG
* *
2269842 TTTTAGTATACTGTTATAAATATA
1 TTTTAATATACTGTTATAATTATA
2269866 CATTTAATTT
Statistics
Matches: 62, Mismatches: 14, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
26 19 0.31
27 39 0.63
28 4 0.06
ACGTcount: A:0.36, C:0.03, G:0.07, T:0.55
Consensus pattern (27 bp):
TTTTAATATACTGTTATAATTATATTG
Found at i:2269874 original size:66 final size:66
Alignment explanation
Indices: 2269741--2269874 Score: 150
Period size: 66 Copynumber: 2.0 Consensus size: 66
2269731 ATGAGTTCGG
* * * * *
2269741 TTATATTGTTTTAATATACTTTTTTAATATATTGTTTTAATATATTGTTATAATATACTGTTATA
1 TTATATTGTTTTAATATAATGTTTTAATATATTATTTTAATATACTGTTATAATATACTATTATA
2269806 A
66 A
*
2269807 TTATATTGTTTTAATATAATGTTTTAACT-T-TTAAATTTTAGTATACTGTTATAAATATAC-AT
1 TTATATTGTTTTAATATAATGTTTTAA-TATATT--ATTTTAATATACTGTTAT-AATATACTAT
2269869 T-TAA
62 TATAA
2269873 TT
1 TT
2269875 TGTAACACAT
Statistics
Matches: 58, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
65 2 0.03
66 31 0.53
67 18 0.31
68 7 0.12
ACGTcount: A:0.34, C:0.04, G:0.06, T:0.56
Consensus pattern (66 bp):
TTATATTGTTTTAATATAATGTTTTAATATATTATTTTAATATACTGTTATAATATACTATTATA
A
Found at i:2269889 original size:15 final size:15
Alignment explanation
Indices: 2269869--2269902 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
2269859 AAATATACAT
*
2269869 TTAATTTGTAACACA
1 TTAATTTCTAACACA
2269884 TTAATTTCTAACACA
1 TTAATTTCTAACACA
2269899 TTAA
1 TTAA
2269903 AAAAAATAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.41, C:0.15, G:0.03, T:0.41
Consensus pattern (15 bp):
TTAATTTCTAACACA
Found at i:2273316 original size:16 final size:16
Alignment explanation
Indices: 2273295--2273339 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
2273285 TTTTTTAAAT
2273295 AATCAAAACCTAAACA
1 AATCAAAACCTAAACA
* * *
2273311 AATCAAGA-CTAACCT
1 AATCAAAACCTAAACA
2273326 AATCAAAACCTAAA
1 AATCAAAACCTAAA
2273340 ATAAAATTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
15 12 0.52
16 11 0.48
ACGTcount: A:0.58, C:0.24, G:0.02, T:0.16
Consensus pattern (16 bp):
AATCAAAACCTAAACA
Found at i:2273372 original size:21 final size:21
Alignment explanation
Indices: 2273346--2273387 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
2273336 TAAAATAAAA
2273346 TTATTTATATTTA-TATTTTTT
1 TTATTT-TATTTATTATTTTTT
*
2273367 TTATTTTTTTTATTATTTTTT
1 TTATTTTATTTATTATTTTTT
2273388 GGTTGAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (21 bp):
TTATTTTATTTATTATTTTTT
Found at i:2276105 original size:19 final size:20
Alignment explanation
Indices: 2276062--2276105 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
2276052 AAAAAGTAAC
* *
2276062 GATTTCAACTTTTTAGTGTA
1 GATTTCAACGTTTTAGGGTA
*
2276082 TATTTCAA-GTTTTAGGGTA
1 GATTTCAACGTTTTAGGGTA
2276101 GATTT
1 GATTT
2276106 GACAAAAAGT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.25, C:0.07, G:0.18, T:0.50
Consensus pattern (20 bp):
GATTTCAACGTTTTAGGGTA
Found at i:2276562 original size:18 final size:18
Alignment explanation
Indices: 2276536--2276572 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
2276526 AACTAGAAAT
*
2276536 TAAAATTAACTTGAAAAC
1 TAAAATTAAATTGAAAAC
*
2276554 TAAATTTAAATTGAAAAC
1 TAAAATTAAATTGAAAAC
2276572 T
1 T
2276573 TATAACGAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.08, G:0.05, T:0.32
Consensus pattern (18 bp):
TAAAATTAAATTGAAAAC
Found at i:2281420 original size:19 final size:18
Alignment explanation
Indices: 2281380--2281422 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 18
2281370 TTGAAAAAAT
* *
2281380 AAAAAGTATAAAACTATT
1 AAAAATTATAAAACTATA
*
2281398 AAAAATTATAAAGATTATA
1 AAAAATTATAAA-ACTATA
2281417 AAAAAT
1 AAAAAT
2281423 ATTTTAAAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
18 11 0.52
19 10 0.48
ACGTcount: A:0.65, C:0.02, G:0.05, T:0.28
Consensus pattern (18 bp):
AAAAATTATAAAACTATA
Found at i:2283334 original size:3 final size:3
Alignment explanation
Indices: 2283321--2283374 Score: 60
Period size: 3 Copynumber: 18.3 Consensus size: 3
2283311 TTGTTATACC
*
2283321 ATA AAA ATA ATA ATA A-A A-A AT- ATA TATA TATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA -ATA -ATA ATA ATA ATA ATA
2283365 ATA ATA ATA A
1 ATA ATA ATA A
2283375 ACCTTTAATT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
2 6 0.13
3 33 0.72
4 7 0.15
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:2294001 original size:3 final size:3
Alignment explanation
Indices: 2293993--2294037 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
2293983 AGCTATGACC
2293993 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
1 ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG ATG
2294038 GGCTGCTGCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (3 bp):
ATG
Found at i:2298898 original size:19 final size:20
Alignment explanation
Indices: 2298876--2298913 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
2298866 TTCTCACTTT
2298876 ATCTATTTT-TTAAATTTTC
1 ATCTATTTTATTAAATTTTC
*
2298895 ATCTATTTTATTTAATTTT
1 ATCTATTTTATTAAATTTT
2298914 TTGAATTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.26, C:0.08, G:0.00, T:0.66
Consensus pattern (20 bp):
ATCTATTTTATTAAATTTTC
Found at i:2298940 original size:29 final size:29
Alignment explanation
Indices: 2298880--2298952 Score: 76
Period size: 29 Copynumber: 2.5 Consensus size: 29
2298870 CACTTTATCT
* **
2298880 ATTTTTTAAATTTTCATCTATTTTATTTA
1 ATTTTTTGAATTTTCATCTATTTTATAGA
*
2298909 ATTTTTTGAATTTTCTATGTATTTT-TAGA
1 ATTTTTTGAATTTTC-ATCTATTTTATAGA
*
2298938 ATTTCTTAGAATTTT
1 ATTT-TTTGAATTTT
2298953 TATATAAACT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
29 20 0.54
30 17 0.46
ACGTcount: A:0.26, C:0.05, G:0.05, T:0.63
Consensus pattern (29 bp):
ATTTTTTGAATTTTCATCTATTTTATAGA
Found at i:2303245 original size:46 final size:46
Alignment explanation
Indices: 2303127--2303245 Score: 202
Period size: 46 Copynumber: 2.6 Consensus size: 46
2303117 TTTAGTTATG
*
2303127 TTTATAATTTTGAAATTATAAGTTAACACGATGATAAAATTATATT
1 TTTATAATTTTGAAATTATAAGTTAATACGATGATAAAATTATATT
* *
2303173 TTTATAATTTTGAATTTATAAGTTAATACGATGATAAAATTGTATT
1 TTTATAATTTTGAAATTATAAGTTAATACGATGATAAAATTATATT
*
2303219 TTTATAATTTTAAAATTATAAGTTAAT
1 TTTATAATTTTGAAATTATAAGTTAAT
2303246 CTTTTTATAC
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 68 1.00
ACGTcount: A:0.42, C:0.03, G:0.08, T:0.47
Consensus pattern (46 bp):
TTTATAATTTTGAAATTATAAGTTAATACGATGATAAAATTATATT
Found at i:2308405 original size:12 final size:12
Alignment explanation
Indices: 2308388--2308413 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
2308378 TTTTAGACAT
2308388 TATATAAATATA
1 TATATAAATATA
2308400 TATATAAATATA
1 TATATAAATATA
2308412 TA
1 TA
2308414 AATATAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (12 bp):
TATATAAATATA
Found at i:2309056 original size:15 final size:15
Alignment explanation
Indices: 2309038--2309094 Score: 51
Period size: 15 Copynumber: 3.5 Consensus size: 15
2309028 ATTAAATATT
2309038 AATATTTTAATAATA
1 AATATTTTAATAATA
*
2309053 AATATTTATTACAGTTATA
1 AATA-TT-TTA-A-TAATA
*
2309072 AATATATTAATAATA
1 AATATTTTAATAATA
*
2309087 AATGTTTT
1 AATATTTT
2309095 GTAGTATAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
15 14 0.42
16 3 0.09
17 6 0.18
18 2 0.06
19 8 0.24
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (15 bp):
AATATTTTAATAATA
Found at i:2318457 original size:3 final size:3
Alignment explanation
Indices: 2318449--2318479 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
2318439 ATGCTGATAC
*
2318449 TAT TAT TAT TAT TAT TAT TAT TAT TAC TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
2318480 TTAATTTAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:2318495 original size:12 final size:12
Alignment explanation
Indices: 2318480--2318504 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
2318470 TATTACTATT
2318480 TTAATTTAATTA
1 TTAATTTAATTA
2318492 TTAATTTAATTA
1 TTAATTTAATTA
2318504 T
1 T
2318505 GTTTTATTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (12 bp):
TTAATTTAATTA
Found at i:2337366 original size:29 final size:31
Alignment explanation
Indices: 2337334--2337396 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 31
2337324 ACAGTATAAT
2337334 GACTAAATTAATC-AATT-TAATAATAAAGG
1 GACTAAATTAATCTAATTCTAATAATAAAGG
* * * *
2337363 GACTAATTTGATCTAATTCTTATAATACAGG
1 GACTAAATTAATCTAATTCTAATAATAAAGG
2337394 GAC
1 GAC
2337397 CTTCTAGGTA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 11 0.39
30 4 0.14
31 13 0.46
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (31 bp):
GACTAAATTAATCTAATTCTAATAATAAAGG
Found at i:2338597 original size:69 final size:70
Alignment explanation
Indices: 2338521--2338668 Score: 280
Period size: 69 Copynumber: 2.1 Consensus size: 70
2338511 AGGAGATATT
2338521 AATATTTAATAAATTTAAATTTCAAAATATAAATTTCTATTTTATACTTA-TTTTAAAAAAATAT
1 AATATTTAATAAATTTAAATTTCAAAATATAAATTTCTATTTTATACTTATTTTTAAAAAAATAT
2338585 TTCAC
66 TTCAC
2338590 AATATTTAATAAATTTAAATTTCAAAATATAAATTTCTATTTTATACTTATTTTTAAAAAAATAT
1 AATATTTAATAAATTTAAATTTCAAAATATAAATTTCTATTTTATACTTATTTTTAAAAAAATAT
2338655 TTCAC
66 TTCAC
*
2338660 AGTATTTAA
1 AATATTTAA
2338669 AAAAAAGTTA
Statistics
Matches: 77, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
69 50 0.65
70 27 0.35
ACGTcount: A:0.46, C:0.07, G:0.01, T:0.47
Consensus pattern (70 bp):
AATATTTAATAAATTTAAATTTCAAAATATAAATTTCTATTTTATACTTATTTTTAAAAAAATAT
TTCAC
Found at i:2343023 original size:20 final size:20
Alignment explanation
Indices: 2342985--2343023 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
2342975 TCTTTCTATA
* *
2342985 CCCAAGGTGCTCTCTGAAGG
1 CCCAAGGTGCTCACAGAAGG
2343005 CCCAAGGTGCTCACAGAAG
1 CCCAAGGTGCTCACAGAAG
2343024 TGAGATCACG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.31, G:0.28, T:0.15
Consensus pattern (20 bp):
CCCAAGGTGCTCACAGAAGG
Found at i:2344894 original size:19 final size:18
Alignment explanation
Indices: 2344859--2344929 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 18
2344849 CATTTGACAA
2344859 AAAAATC-ATAAAA-TAT
1 AAAAATCAATAAAATTAT
2344875 AAAAATCAATAAAAGTTAT
1 AAAAATCAATAAAA-TTAT
* *
2344894 AAAAATTATTAAAATTTAAT
1 AAAAATCAATAAAA-TT-AT
*
2344914 AAAAATATAATAAAAT
1 AAAAAT-CAATAAAAT
2344930 ATTTAAAATT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
16 7 0.15
17 6 0.13
19 17 0.37
20 9 0.20
21 7 0.15
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (18 bp):
AAAAATCAATAAAATTAT
Found at i:2344895 original size:9 final size:9
Alignment explanation
Indices: 2344859--2345003 Score: 75
Period size: 10 Copynumber: 15.6 Consensus size: 9
2344849 CATTTGACAA
*
2344859 AAAAATCAT
1 AAAAATTAT
2344868 -AAAA-TAT
1 AAAAATTAT
*
2344875 AAAAATCAAT
1 AAAAAT-TAT
*
2344885 AAAAGTTAT
1 AAAAATTAT
2344894 AAAAATTATT
1 AAAAATTA-T
*
2344904 AAAATTTAAT
1 AAAAATT-AT
2344914 AAAAATATAAT
1 AAAAAT-T-AT
2344925 AAAATATT-T
1 AAAA-ATTAT
*
2344934 AAAATTTACT
1 AAAAATTA-T
* *
2344944 AATAA-TAG
1 AAAAATTAT
2344952 AAAAA-TAT
1 AAAAATTAT
*
2344960 AAAAATAGTAA
1 AAAAAT--TAT
*
2344971 AAAAATCAT
1 AAAAATTAT
2344980 AAAAAATTAT
1 -AAAAATTAT
*
2344990 AAAAAGTAT
1 AAAAATTAT
2344999 AAAAA
1 AAAAA
2345004 AAGATCCTTT
Statistics
Matches: 105, Mismatches: 18, Indels: 26
0.70 0.12 0.17
Matches are distributed among these distances:
7 2 0.02
8 21 0.20
9 30 0.29
10 32 0.30
11 18 0.17
12 2 0.02
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.28
Consensus pattern (9 bp):
AAAAATTAT
Found at i:2344966 original size:19 final size:18
Alignment explanation
Indices: 2344944--2345003 Score: 57
Period size: 19 Copynumber: 3.1 Consensus size: 18
2344934 AAAATTTACT
2344944 AATAATAGAAAAATATAAA
1 AATAATA-AAAAATATAAA
*
2344963 AATAGTAAAAAAATCATAAAA
1 AATAAT-AAAAAAT-AT-AAA
* *
2344984 AATTATAAAAAGTATAAA
1 AATAATAAAAAATATAAA
2345002 AA
1 AA
2345004 AAGATCCTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
18 5 0.15
19 13 0.38
20 9 0.26
21 7 0.21
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.22
Consensus pattern (18 bp):
AATAATAAAAAATATAAA
Found at i:2344974 original size:11 final size:10
Alignment explanation
Indices: 2344952--2345005 Score: 51
Period size: 11 Copynumber: 5.5 Consensus size: 10
2344942 CTAATAATAG
2344952 AAAAATAT--
1 AAAAATATAA
2344960 AAAAATAGTAA
1 AAAAATA-TAA
2344971 AAAAATCATAA
1 AAAAAT-ATAA
*
2344982 AAAATTAT-A
1 AAAAATATAA
*
2344991 AAAAGTATAA
1 AAAAATATAA
2345001 AAAAA
1 AAAAA
2345006 GATCCTTTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
8 7 0.18
9 9 0.24
10 7 0.18
11 14 0.37
12 1 0.03
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (10 bp):
AAAAATATAA
Found at i:2347605 original size:16 final size:16
Alignment explanation
Indices: 2347584--2347615 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
2347574 TAATCTTATT
2347584 AAATATAATTTAATAA
1 AAATATAATTTAATAA
2347600 AAATATAATTTAATAA
1 AAATATAATTTAATAA
2347616 CATTCTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AAATATAATTTAATAA
Found at i:2347851 original size:27 final size:26
Alignment explanation
Indices: 2347802--2347885 Score: 69
Period size: 27 Copynumber: 3.1 Consensus size: 26
2347792 AATTCATATA
* *
2347802 ATAATTATATTAAGAATGTTATTAAATT
1 ATAATTATGTTAA-AAT-ATATTAAATT
* * * * *
2347830 ATATTTTTTGTTAAATTATATTTAATA
1 ATA-ATTATGTTAAAATATATTAAATT
2347857 ATAATTATGTTAAAATATGATTAAATT
1 ATAATTATGTTAAAATAT-ATTAAATT
2347884 AT
1 AT
2347886 TTATTATTTT
Statistics
Matches: 42, Mismatches: 12, Indels: 5
0.71 0.20 0.08
Matches are distributed among these distances:
26 12 0.29
27 18 0.43
28 5 0.12
29 7 0.17
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (26 bp):
ATAATTATGTTAAAATATATTAAATT
Found at i:2347864 original size:55 final size:57
Alignment explanation
Indices: 2347794--2347930 Score: 158
Period size: 58 Copynumber: 2.4 Consensus size: 57
2347784 AATTTTTTAA
* * *
2347794 TTCATATAATAATTATATTAAGAATGTTATTAAATTA-TA-T-TTTTTGTTAAATTATAT
1 TTCA-ATAATAATTATATTAA-AATATGATTAAATTATTATTATTTTTATTAAATTAT-T
*
2347851 TT-AATAATAATTATGTTAAAATATGATTAAATTATTTATTATTTTTATTAAATTATT
1 TTCAATAATAATTATATTAAAATATGATTAAATTA-TTATTATTTTTATTAAATTATT
2347908 TTCAATAATAATCT-TATTAAAAT
1 TTCAATAATAAT-TATATTAAAAT
2347931 TTAATAACAA
Statistics
Matches: 69, Mismatches: 5, Indels: 11
0.81 0.06 0.13
Matches are distributed among these distances:
54 13 0.19
55 15 0.22
56 3 0.04
57 6 0.09
58 31 0.45
59 1 0.01
ACGTcount: A:0.42, C:0.02, G:0.04, T:0.52
Consensus pattern (57 bp):
TTCAATAATAATTATATTAAAATATGATTAAATTATTATTATTTTTATTAAATTATT
Found at i:2368978 original size:15 final size:16
Alignment explanation
Indices: 2368958--2368994 Score: 51
Period size: 15 Copynumber: 2.4 Consensus size: 16
2368948 TAATCTCATG
2368958 TTGAAACACATA-A-AT
1 TTGAAAC-CATATATAT
2368973 TTGAAACCATATATAT
1 TTGAAACCATATATAT
2368989 TTGAAA
1 TTGAAA
2368995 ATTTTTTCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 4 0.20
15 8 0.40
16 8 0.40
ACGTcount: A:0.49, C:0.11, G:0.08, T:0.32
Consensus pattern (16 bp):
TTGAAACCATATATAT
Found at i:2369166 original size:18 final size:20
Alignment explanation
Indices: 2369126--2369167 Score: 52
Period size: 18 Copynumber: 2.2 Consensus size: 20
2369116 TATTTTTTAG
* *
2369126 ATTTTTTTGAAATATTTATA
1 ATTTTTTTGAAATATATAAA
2369146 ATTTTTTT-AAAT-TATAAA
1 ATTTTTTTGAAATATATAAA
2369164 ATTT
1 ATTT
2369168 GAAATTTTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 8 0.40
19 4 0.20
20 8 0.40
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (20 bp):
ATTTTTTTGAAATATATAAA
Found at i:2370192 original size:25 final size:25
Alignment explanation
Indices: 2370156--2370211 Score: 62
Period size: 25 Copynumber: 2.3 Consensus size: 25
2370146 TTCTTGGTGC
*
2370156 TTAATT-ACAAAT-GTTTTAAAATCA
1 TTAATTAAAAAATAGTTTTAAAAT-A
*
2370180 TTAATTAAAAAATATTTTTAAAATA
1 TTAATTAAAAAATAGTTTTAAAATA
*
2370205 CTAATTA
1 TTAATTA
2370212 TAAATATTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 6 0.22
25 12 0.44
26 9 0.33
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (25 bp):
TTAATTAAAAAATAGTTTTAAAATA
Found at i:2370202 original size:26 final size:24
Alignment explanation
Indices: 2370169--2370220 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
2370159 ATTACAAATG
*
2370169 TTTTAAAATCATTAATTAAAAAATAT
1 TTTTAAAAT-ACTAATT-AAAAATAT
*
2370195 TTTTAAAATACTAATTATAAATAT
1 TTTTAAAATACTAATTAAAAATAT
2370219 TT
1 TT
2370221 AATGGTTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 9 0.38
25 6 0.25
26 9 0.38
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (24 bp):
TTTTAAAATACTAATTAAAAATAT
Found at i:2370523 original size:13 final size:13
Alignment explanation
Indices: 2370507--2370557 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
2370497 TTTAAACCAA
*
2370507 ACTTTTCAAAAGC
1 ACTTCTCAAAAGC
*
2370520 ACTTCTCAAAAGT
1 ACTTCTCAAAAGC
* *
2370533 ACTTTTCCACAA-C
1 ACTTCT-CAAAAGC
2370546 ACTTCTCAAAAG
1 ACTTCTCAAAAG
2370558 TAATAAAGAA
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
12 4 0.14
13 21 0.72
14 4 0.14
ACGTcount: A:0.37, C:0.27, G:0.06, T:0.29
Consensus pattern (13 bp):
ACTTCTCAAAAGC
Found at i:2372316 original size:29 final size:30
Alignment explanation
Indices: 2372261--2372330 Score: 72
Period size: 29 Copynumber: 2.3 Consensus size: 30
2372251 ATCTAATGTA
* * *
2372261 CAATTGTATACATTAACTTTGATTTTG-TG
1 CAATTTTATACATAAACTTTGATTTTGATC
*
2372290 CAATTTTATACATGAAATTTTGA-TTTGATC
1 CAATTTTATACAT-AAACTTTGATTTTGATC
2372320 CAATTCTTATA
1 CAATT-TTATA
2372331 AATTATTAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
29 16 0.47
30 13 0.38
31 5 0.15
ACGTcount: A:0.31, C:0.11, G:0.10, T:0.47
Consensus pattern (30 bp):
CAATTTTATACATAAACTTTGATTTTGATC
Found at i:2381206 original size:25 final size:25
Alignment explanation
Indices: 2381146--2381206 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
2381136 GCAAACGAAC
* * *
2381146 GACGGTGGTCGCTTGGTGGATGCCA
1 GACGGTGGTGGCTTAGTGGATACCA
* * *
2381171 AATGGTAGTGGCTTAGTGGATACCA
1 GACGGTGGTGGCTTAGTGGATACCA
2381196 GACGGTGGTGG
1 GACGGTGGTGG
2381207 GTGTGTTGAG
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
25 27 1.00
ACGTcount: A:0.18, C:0.15, G:0.43, T:0.25
Consensus pattern (25 bp):
GACGGTGGTGGCTTAGTGGATACCA
Found at i:2381511 original size:14 final size:15
Alignment explanation
Indices: 2381492--2381524 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
2381482 CACCACATAA
2381492 TTTAAA-AACATTTT
1 TTTAAATAACATTTT
*
2381506 TTTAAATAACCTTTT
1 TTTAAATAACATTTT
2381521 TTTA
1 TTTA
2381525 TTTATTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 6 0.35
15 11 0.65
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.55
Consensus pattern (15 bp):
TTTAAATAACATTTT
Found at i:2385629 original size:31 final size:31
Alignment explanation
Indices: 2385594--2385700 Score: 178
Period size: 31 Copynumber: 3.5 Consensus size: 31
2385584 AAAAAAACTT
* *
2385594 AATAGTCCAATGACTTAAATAAAAACTTTCA
1 AATAGTTCAATGACTTAAATGAAAACTTTCA
*
2385625 AATAGTTCAATGACTTAAATGAAAACTTTCC
1 AATAGTTCAATGACTTAAATGAAAACTTTCA
2385656 AATAGTTCAATGACTTAAATGAAAACTTTCA
1 AATAGTTCAATGACTTAAATGAAAACTTTCA
*
2385687 AATAATTCAATGAC
1 AATAGTTCAATGAC
2385701 AATTTTGCAA
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 71 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (31 bp):
AATAGTTCAATGACTTAAATGAAAACTTTCA
Found at i:2395496 original size:2 final size:2
Alignment explanation
Indices: 2395489--2395513 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
2395479 AAGCAGATTT
2395489 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
2395514 GCCACATGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:2397794 original size:22 final size:22
Alignment explanation
Indices: 2397769--2397811 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
2397759 AAATTTAGTC
*
2397769 TTTA-TCCTTTTATTTCTAAAAA
1 TTTAGTCCTTCTATTT-TAAAAA
2397791 TTTAGTCCTTCTATTTTAAAA
1 TTTAGTCCTTCTATTTTAAAA
2397812 TTCAAGTACA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 9 0.47
23 10 0.53
ACGTcount: A:0.30, C:0.14, G:0.02, T:0.53
Consensus pattern (22 bp):
TTTAGTCCTTCTATTTTAAAAA
Found at i:2401171 original size:16 final size:17
Alignment explanation
Indices: 2401150--2401188 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
2401140 TATAAAATCT
* *
2401150 ATAAAAAA-CAATATAC
1 ATAAAAAATAAATATAA
2401166 ATAAAAAATAAATATAA
1 ATAAAAAATAAATATAA
2401183 ATAAAA
1 ATAAAA
2401189 TGCAAAAGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 8 0.40
17 12 0.60
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (17 bp):
ATAAAAAATAAATATAA
Found at i:2401343 original size:21 final size:21
Alignment explanation
Indices: 2401310--2401353 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
2401300 ATATGTCATA
2401310 TATTTTAATCTCTTTTTTATTT
1 TATTTTAATCTCTTTTTT-TTT
2401332 TATTTT-ATCTCTTTTTTTTT
1 TATTTTAATCTCTTTTTTTTT
2401352 TA
1 TA
2401354 ATATGGAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 5 0.23
21 11 0.50
22 6 0.27
ACGTcount: A:0.16, C:0.09, G:0.00, T:0.75
Consensus pattern (21 bp):
TATTTTAATCTCTTTTTTTTT
Found at i:2407445 original size:43 final size:41
Alignment explanation
Indices: 2407337--2407565 Score: 185
Period size: 42 Copynumber: 5.4 Consensus size: 41
2407327 ACGTCTCTAA
* ** * *
2407337 CTTTTGCGGCGCTTACACAAAAAAACGCCGCTAAAGATCATGCT
1 CTTTAGCGGCGCTTA-GGAAAAAAACGCCGC-GAA-ATCATGTT
*
2407381 CTTTAGCGGCGCTTAGG-AAAAAACGCCACGAAATCTCATGTT
1 CTTTAGCGGCGCTTAGGAAAAAAACGCCGCGAAA--TCATGTT
2407423 CTTTAGCGGCGCTTAGGAAAAAAACGCCGCTGAAGATCATGTT
1 CTTTAGCGGCGCTTAGGAAAAAAACGCCGC-GAA-ATCATGTT
* * * * *
2407466 CTTTAGCGGCGCTTTGGAATAAAACGCCTCTAAAAGTAATGTT
1 CTTTAGCGGCGCTTAGGAAAAAAACGCCGC-GAAA-TCATGTT
*** *
2407509 CTTTAGCGGCGCTT-GTTCAAAAACGCCGCTAAAAGT-AGTGTT
1 CTTTAGCGGCGCTTAGGAAAAAAACGCCGC-GAAA-TCA-TGTT
*
2407551 CTTTAGCCGCGCTTA
1 CTTTAGCGGCGCTTA
2407566 TTTCACAAAC
Statistics
Matches: 159, Mismatches: 18, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
40 1 0.01
41 3 0.02
42 69 0.43
43 68 0.43
44 17 0.11
45 1 0.01
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (41 bp):
CTTTAGCGGCGCTTAGGAAAAAAACGCCGCGAAATCATGTT
Found at i:2407578 original size:85 final size:86
Alignment explanation
Indices: 2407337--2407564 Score: 257
Period size: 85 Copynumber: 2.7 Consensus size: 86
2407327 ACGTCTCTAA
* ** * * *
2407337 CTTTTGCGGCGCTTACACAAAAAAACGCCGCTAAAGATCATGCTCTTTAGCGGCGCTTAGGAA-A
1 CTTTAGCGGCGCTTA-GGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCCGCGCTTTGGAATA
* * ** *
2407401 AAACGCCACGAAATCTCATGTT
65 AAACGCCTCTAAAAGTAATGTT
* *
2407423 CTTTAGCGGCGCTTAGGAAAAAAACGCCGCTGAAGATCATGTTCTTTAGCGGCGCTTTGGAATAA
1 CTTTAGCGGCGCTTAGGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCCGCGCTTTGGAATAA
2407488 AACGCCTCTAAAAGTAATGTT
66 AACGCCTCTAAAAGTAATGTT
***
2407509 CTTTAGCGGCGCTT-GTTCAAAAACGCCGCTAAA-AGT-AGTGTTCTTTAGCCGCGCTT
1 CTTTAGCGGCGCTTAGGAAAAAAACGCCGCTAAAGA-TCA-TGTTCTTTAGCCGCGCTT
2407565 ATTTCACAAA
Statistics
Matches: 123, Mismatches: 16, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
84 2 0.02
85 75 0.61
86 46 0.37
ACGTcount: A:0.29, C:0.23, G:0.22, T:0.26
Consensus pattern (86 bp):
CTTTAGCGGCGCTTAGGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCCGCGCTTTGGAATAA
AACGCCTCTAAAAGTAATGTT
Found at i:2413593 original size:9 final size:9
Alignment explanation
Indices: 2413558--2413885 Score: 280
Period size: 9 Copynumber: 36.2 Consensus size: 9
2413548 TTAAACAATA
2413558 ATGTAAGTT
1 ATGTAAGTT
*
2413567 A-GGAAGGTT
1 ATGTAA-GTT
2413576 ATGT-A-TT
1 ATGTAAGTT
2413583 ATGTAAGTT
1 ATGTAAGTT
*
2413592 ATGTAATTT
1 ATGTAAGTT
2413601 ATGTAAGTT
1 ATGTAAGTT
2413610 ATGTAAGTT
1 ATGTAAGTT
*
2413619 ATTTAAGTT
1 ATGTAAGTT
2413628 ATGTAAGTT
1 ATGTAAGTT
2413637 ATGTAAGTT
1 ATGTAAGTT
* *
2413646 ATTTAATTT
1 ATGTAAGTT
*
2413655 ATATAAGTT
1 ATGTAAGTT
2413664 ATGTAAGTT
1 ATGTAAGTT
* *
2413673 ATATAATTT
1 ATGTAAGTT
2413682 ATGTAAGCAATT
1 ATGTAAG---TT
* *
2413694 -TAGAAAAAATT
1 AT-G--TAAGTT
2413705 ATGTAAGTT
1 ATGTAAGTT
2413714 ATGTATAAGTT
1 ATG--TAAGTT
2413725 ATGT-A-TT
1 ATGTAAGTT
*
2413732 ATGTAAATT
1 ATGTAAGTT
2413741 ATGTATTAAGTT
1 ATG---TAAGTT
2413753 ATGT-A-TT
1 ATGTAAGTT
* *
2413760 ATGTAAATA
1 ATGTAAGTT
*
2413769 ATTTAAGTT
1 ATGTAAGTT
* *
2413778 AGGTAGGTT
1 ATGTAAGTT
2413787 ATGT-A-TT
1 ATGTAAGTT
2413794 ATGTAAGTT
1 ATGTAAGTT
*
2413803 ATTTAAGTT
1 ATGTAAGTT
2413812 ATGTAAGTT
1 ATGTAAGTT
2413821 ATGTAAGTT
1 ATGTAAGTT
* *
2413830 ATTTAATTT
1 ATGTAAGTT
*
2413839 ATGTAAGGT
1 ATGTAAGTT
2413848 ATGTAAGTT
1 ATGTAAGTT
2413857 ATGTAAGTT
1 ATGTAAGTT
* *
2413866 ATATAATTT
1 ATGTAAGTT
2413875 ATGTAAGTT
1 ATGTAAGTT
2413884 AT
1 AT
2413886 ATAATTTAAA
Statistics
Matches: 256, Mismatches: 41, Indels: 44
0.75 0.12 0.13
Matches are distributed among these distances:
7 24 0.09
8 9 0.04
9 195 0.76
10 1 0.00
11 13 0.05
12 12 0.05
14 2 0.01
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.46
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:2413756 original size:12 final size:12
Alignment explanation
Indices: 2413708--2413760 Score: 54
Period size: 12 Copynumber: 4.2 Consensus size: 12
2413698 AAAAATTATG
2413708 TAAGTTATGTA-
1 TAAGTTATGTAT
2413719 TAAGTTATGTATTAT
1 TAAGTTATG---TAT
*
2413734 GTAAATTATGTAT
1 -TAAGTTATGTAT
2413747 TAAGTTATGTAT
1 TAAGTTATGTAT
2413759 TA
1 TA
2413761 TGTAAATAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
11 9 0.26
12 13 0.37
13 3 0.09
14 2 0.06
16 8 0.23
ACGTcount: A:0.36, C:0.00, G:0.15, T:0.49
Consensus pattern (12 bp):
TAAGTTATGTAT
Found at i:2413759 original size:28 final size:27
Alignment explanation
Indices: 2413702--2413825 Score: 116
Period size: 25 Copynumber: 4.6 Consensus size: 27
2413692 TTTAGAAAAA
*
2413702 ATTATGTAAGTTATGTATAAGTTATGT
1 ATTATGTAAATTATGTATAAGTTATGT
2413729 ATTATGTAAATTATGTATTAAGTTATGT
1 ATTATGTAAATTATGTA-TAAGTTATGT
* *
2413757 ATTATGTAAATAAT-T-TAAGTTAGGT
1 ATTATGTAAATTATGTATAAGTTATGT
*
2413782 AGGTTATGT--ATTATG--TAAGTTATTT
1 A--TTATGTAAATTATGTATAAGTTATGT
*
2413807 AAGTTATGTAAGTTATGTA
1 -A-TTATGTAAATTATGTA
2413826 AGTTATTTAA
Statistics
Matches: 81, Mismatches: 7, Indels: 16
0.78 0.07 0.15
Matches are distributed among these distances:
25 29 0.36
26 1 0.01
27 28 0.35
28 23 0.28
ACGTcount: A:0.35, C:0.00, G:0.18, T:0.48
Consensus pattern (27 bp):
ATTATGTAAATTATGTATAAGTTATGT
Found at i:2414058 original size:17 final size:18
Alignment explanation
Indices: 2414026--2414059 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
2414016 TGATTGATAA
2414026 ATTTTGAAAAAAATATAG
1 ATTTTGAAAAAAATATAG
*
2414044 ATTTT-AAAAATATATA
1 ATTTTGAAAAAAATATA
2414060 TTAAAAATGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (18 bp):
ATTTTGAAAAAAATATAG
Found at i:2416814 original size:26 final size:26
Alignment explanation
Indices: 2416779--2416828 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
2416769 AAATAAAAAG
*
2416779 GGGGTTGCTATGTGCTGATTCCCCAA
1 GGGGTTGCTAAGTGCTGATTCCCCAA
2416805 GGGGTTGCTAAGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
2416829 GATTAAGTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.14, C:0.24, G:0.32, T:0.30
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCAA
Found at i:2419404 original size:21 final size:21
Alignment explanation
Indices: 2419380--2419430 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
2419370 ATAACCTAGA
2419380 CCCTAAACCACAACCCTTATC
1 CCCTAAACCACAACCCTTATC
* * *
2419401 CCCTAAATCGCAATCCTTATC
1 CCCTAAACCACAACCCTTATC
*
2419422 CCTTAAACC
1 CCCTAAACC
2419431 CTAAATCGTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.31, C:0.43, G:0.02, T:0.24
Consensus pattern (21 bp):
CCCTAAACCACAACCCTTATC
Found at i:2419448 original size:28 final size:28
Alignment explanation
Indices: 2419401--2419463 Score: 72
Period size: 28 Copynumber: 2.2 Consensus size: 28
2419391 AACCCTTATC
*
2419401 CCCTAAATCGCAATCCTTATCCCTTAAA
1 CCCTAAATCGCAAACCTTATCCCTTAAA
* * * *
2419429 CCCTAAATCGTAAACTTTATTCCTTAGA
1 CCCTAAATCGCAAACCTTATCCCTTAAA
*
2419457 CCTTAAA
1 CCCTAAA
2419464 CCCTAAACCA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.33, C:0.30, G:0.05, T:0.32
Consensus pattern (28 bp):
CCCTAAATCGCAAACCTTATCCCTTAAA
Found at i:2421648 original size:7 final size:7
Alignment explanation
Indices: 2421636--2421662 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
2421626 CAATTGAACC
2421636 TGAAATT
1 TGAAATT
2421643 TGAAATT
1 TGAAATT
2421650 TGAAATT
1 TGAAATT
2421657 TGAAAT
1 TGAAAT
2421663 GTAAAGAGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.44, C:0.00, G:0.15, T:0.41
Consensus pattern (7 bp):
TGAAATT
Found at i:2422124 original size:14 final size:14
Alignment explanation
Indices: 2422105--2422137 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
2422095 CAATTGAACC
2422105 TGAAATTT-AAAATT
1 TGAAATTTGAAAA-T
2422119 TGAAATTTGAAAAT
1 TGAAATTTGAAAAT
2422133 TGAAA
1 TGAAA
2422138 AGTAAAGAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 14 0.78
15 4 0.22
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (14 bp):
TGAAATTTGAAAAT
Found at i:2423754 original size:25 final size:24
Alignment explanation
Indices: 2423716--2423766 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
2423706 TTTTGAACAA
*
2423716 TTTAATTTTTTTCTTTTATATTCT
1 TTTAATTTCTTTCTTTTATATTCT
* *
2423740 TTTAACTTTCTTTCTTTTTTCTTCT
1 TTTAA-TTTCTTTCTTTTATATTCT
2423765 TT
1 TT
2423767 ATTTGCCCTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 5 0.22
25 18 0.78
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.75
Consensus pattern (24 bp):
TTTAATTTCTTTCTTTTATATTCT
Found at i:2425286 original size:21 final size:20
Alignment explanation
Indices: 2425260--2425301 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
2425250 TTATGAAAAA
2425260 TGGGTTTTTCATCTTCTTTTT
1 TGGG-TTTTCATCTTCTTTTT
* *
2425281 TGGGTTTTCTTTTTCTTTTT
1 TGGGTTTTCATCTTCTTTTT
2425301 T
1 T
2425302 CTTTAGGTGG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.02, C:0.12, G:0.14, T:0.71
Consensus pattern (20 bp):
TGGGTTTTCATCTTCTTTTT
Found at i:2430723 original size:13 final size:13
Alignment explanation
Indices: 2430707--2430731 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2430697 TTTGCATTGG
2430707 AAATATAAAATTT
1 AAATATAAAATTT
2430720 AAATATAAAATT
1 AAATATAAAATT
2430732 CAATCTCATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (13 bp):
AAATATAAAATTT
Done.