Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 70 of 170
Found at i:21109321 original size:21 final size:20
Alignment explanation
Indices: 21109296--21109336 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
21109286 AATTTGAGTT
*
21109296 GTTAATATAATTTTGAACTTG
1 GTTAAAATAATTTT-AACTTG
*
21109317 GTTAAAATTATTTTAACTTG
1 GTTAAAATAATTTTAACTTG
21109337 ATTTTAAAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.34, C:0.05, G:0.12, T:0.49
Consensus pattern (20 bp):
GTTAAAATAATTTTAACTTG
Found at i:21110149 original size:17 final size:17
Alignment explanation
Indices: 21110119--21110165 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
21110109 AATTTAGAAT
*
21110119 AATTTT-TGAATTAGTG
1 AATTTTGTGATTTAGTG
21110135 AATTTTGTGATTTAGTG
1 AATTTTGTGATTTAGTG
*
21110152 AATTTTGCGATTTA
1 AATTTTGTGATTTA
21110166 AAAAGAATTT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
16 6 0.21
17 22 0.79
ACGTcount: A:0.28, C:0.02, G:0.19, T:0.51
Consensus pattern (17 bp):
AATTTTGTGATTTAGTG
Found at i:21111460 original size:46 final size:46
Alignment explanation
Indices: 21111385--21111474 Score: 162
Period size: 46 Copynumber: 2.0 Consensus size: 46
21111375 CATGGGAAAG
*
21111385 TGTGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGT
1 TGTGAAAAGTAGGTATGGTATTTCGGTGAAGAAAACCATACTGAGT
*
21111431 TGTGAAAAGTAGGTATGGTATTTCTGTGAAGAAAACCATACTGA
1 TGTGAAAAGTAGGTATGGTATTTCGGTGAAGAAAACCATACTGA
21111475 ATTATCGCAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
46 42 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (46 bp):
TGTGAAAAGTAGGTATGGTATTTCGGTGAAGAAAACCATACTGAGT
Found at i:21117229 original size:18 final size:18
Alignment explanation
Indices: 21117208--21117248 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
21117198 TCTCCAATTT
21117208 AGATCCTCACACCAACTC
1 AGATCCTCACACCAACTC
21117226 AGATCCTCACACCAACTC
1 AGATCCTCACACCAACTC
*
21117244 TGATC
1 AGATC
21117249 ATCAACATTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.32, C:0.41, G:0.07, T:0.20
Consensus pattern (18 bp):
AGATCCTCACACCAACTC
Found at i:21118136 original size:49 final size:49
Alignment explanation
Indices: 21118012--21118192 Score: 263
Period size: 49 Copynumber: 3.7 Consensus size: 49
21118002 ACACCATTTA
* * *
21118012 TGGACAAGCCACCACTGATTTGCAGATAAACTGCCATTGATAACTCTTTTG
1 TGGACAAGCCACCACTAATTTGCAGATATACTGCCATTGATAA--ATTTTG
* *
21118063 TGGAAAAGCCACCACTAATATGCAGATATACTGCCATTGATAAATTTTG
1 TGGACAAGCCACCACTAATTTGCAGATATACTGCCATTGATAAATTTTG
* *
21118112 TGGACAAGCCACCACTGATTTGCAGATATACTACCATTGATAAATTTTG
1 TGGACAAGCCACCACTAATTTGCAGATATACTGCCATTGATAAATTTTG
* *
21118161 TGGACAAGTCACCACTAACTTGCAGATATACT
1 TGGACAAGCCACCACTAATTTGCAGATATACT
21118193 ACCACTGCTT
Statistics
Matches: 118, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
49 79 0.67
51 39 0.33
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (49 bp):
TGGACAAGCCACCACTAATTTGCAGATATACTGCCATTGATAAATTTTG
Found at i:21118953 original size:11 final size:11
Alignment explanation
Indices: 21118937--21118980 Score: 65
Period size: 11 Copynumber: 4.1 Consensus size: 11
21118927 GTATTAGTAC
21118937 AATAATAAATA
1 AATAATAAATA
21118948 AATAATAAAT-
1 AATAATAAATA
21118958 AATAA-ATAATA
1 AATAATA-AATA
21118969 AATAATAAATA
1 AATAATAAATA
21118980 A
1 A
21118981 TAAAATGTAA
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
9 1 0.03
10 8 0.27
11 20 0.67
12 1 0.03
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (11 bp):
AATAATAAATA
Found at i:21118954 original size:7 final size:7
Alignment explanation
Indices: 21118944--21118984 Score: 82
Period size: 7 Copynumber: 5.9 Consensus size: 7
21118934 TACAATAATA
21118944 AATAAAT
1 AATAAAT
21118951 AATAAAT
1 AATAAAT
21118958 AATAAAT
1 AATAAAT
21118965 AATAAAT
1 AATAAAT
21118972 AATAAAT
1 AATAAAT
21118979 AATAAA
1 AATAAA
21118985 ATGTAACATT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 34 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AATAAAT
Found at i:21122793 original size:21 final size:21
Alignment explanation
Indices: 21122764--21122818 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 21
21122754 GTCCAGAGTC
*
21122764 TGTCACGACATCGAA-CCCTG
1 TGTCGCGACATCGAACCCCTG
21122784 ATGTCGCGACA-CAGAACCCCTG
1 -TGTCGCGACATC-GAACCCCTG
*
21122806 TGTCGTGACATCG
1 TGTCGCGACATCG
21122819 TCGTAATTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 1 0.03
21 22 0.76
22 6 0.21
ACGTcount: A:0.24, C:0.33, G:0.24, T:0.20
Consensus pattern (21 bp):
TGTCGCGACATCGAACCCCTG
Found at i:21124909 original size:28 final size:28
Alignment explanation
Indices: 21124876--21124969 Score: 143
Period size: 28 Copynumber: 3.3 Consensus size: 28
21124866 ATATCTGCAA
*
21124876 ATCAGTGGTGGCATGTCGACAAAATTGT
1 ATCAGTGGTGGCATGTCCACAAAATTGT
21124904 ATCAGTGGTGGCATGTCCACAAAATTGT
1 ATCAGTGGTGGCATGTCCACAAAATTGT
* *
21124932 ATCAGTGGTGGCTTGTCCACAAAAGTGTT
1 ATCAGTGGTGGCATGTCCACAAAATTG-T
*
21124961 ATTAGTGGT
1 ATCAGTGGT
21124970 AGTTTATCTG
Statistics
Matches: 61, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 52 0.85
29 9 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.31
Consensus pattern (28 bp):
ATCAGTGGTGGCATGTCCACAAAATTGT
Found at i:21132984 original size:600 final size:593
Alignment explanation
Indices: 21131845--21133043 Score: 1648
Period size: 600 Copynumber: 2.0 Consensus size: 593
21131835 TTGCTGGATT
* * * * * ** *
21131845 GAGTTGGGGGAGAAGAATGTGTTAGGACCGGATCTAGTGCAGGAGACTAAGAATATTGTGAAGAT
1 GAGTTGGGGGAGAAGAAAGTATTAGGACCGGATCAACTGCAGAAGACTAAGAATAGAGTGAAAAT
* * *
21131910 TATTTGGGATCATTTTAAAGCGACATTTGACAAGCAAAAGTCTTATTCTGACTTGAAGAGGAAGG
66 TATTTGGGATCATTTAAAAGCGACATCTGACAAGCAAAAGTCTTATTCTGACCTGAAGAGGAAGG
* * * * * *
21131975 ATATAGAGTTTACTGTTGGTGAACGGGTCTTCCTTAAGGTTGGAATAAAGTGTTGAGAGTTGGCT
131 ATATAGAGTTCAATATTGGTGAACGGGTCTTCCTTAAGGTTGGAAGAAAGTGTTAAGAGTTGGCC
* *
21132040 GCCAAGGGAAACTGAGTTTGAGGTTCACCAGACCGTATCACATCATGAAGAGAGTGGGACCAGTG
196 GCCAAGGGAAACTGAGTCTGAGGTTCACCAGACCCTATCACATCATGAAGAGAGTGGGACCAGTG
* * * * * *
21132105 GCATATCAGCTTGAGTTACCTCCAGAGTTGGATCATATCCACGATGTTTTTATTTGTCCATGTTG
261 GCACATCAACTTGAGTTACCTCCAAAGTTGGATCATATCCACGACGTTTTCATGTGTCCATGTTG
** * * *
21132170 AGGCGATACCAATTTGACCTTACTCATATAGTTTCGATTAAGGAGATTAAGGTTCAATCGGATTT
326 AGAAGATACCAATTTGACCCTACCCATATAGTTTCGATTAAGGAGATTAAGGTTCAATCGAATTT
* * * *
21132235 GTCATTTGATGAGGAACCGATACAGATCCTTGATCGTGACTTCAAAGTTTTGCGAAGGAAGAAGA
391 GTCATTTGATGAGGAACCGATACAGATCCTCGATCATGACGTCAAAGTTTTACGAAGGAAGAAGA
* * *
21132300 TTCCACTTGTGAAAGTTTTGTGGAGGAATCACAGTTCTAATGAGACCACTTGAGAGTCGGAATAT
456 TTCCACTTGTGAAAGTTTTGTGGAGGAATCACAGCTCTAATGAGACCACTTGAGAGCCGAAATAT
* * * * * *
21132365 TTATTGCTTCAACAATATCCTTACCTTTTTCCATGAGGTAAATTTTGAGGATGAAATTTTTATAA
521 TTAATGCGTCAACAATATCCTCACCTTTTTCCATCAGGTAAATTTCGAGGAAGAAATTTTTATAA
21132430 GGAGGGTA
586 GGAGGGTA
*
21132438 GAGTTGGGGGAGAAGAAAGTATTAGGACCGGATCAACTGCAGAAGACTGAGAATAGAGTGAAAAT
1 GAGTTGGGGGAGAAGAAAGTATTAGGACCGGATCAACTGCAGAAGACTAAGAATAGAGTGAAAAT
* * *
21132503 T-TTTCGGGATCATTTAAAAGTGACATCTGACAGGCAAAAGTCTTATTTTGACCTGAAGAGGAAG
66 TATTT-GGGATCATTTAAAAGCGACATCTGACAAGCAAAAGTCTTATTCTGACCTGAAGAGGAAG
* * * *
21132567 TATATAGAGTTCAATATTGGTGAATGGGTCTTCCTTAATGTTTCACGTTGGGAGAAATTGTTAAG
130 GATATAGAGTTCAATATTGGTGAACGGGTCTTCCTTAA-G------GTTGGAAGAAAGTGTTAAG
* * * * *
21132632 ATTTGGCCGCTAGGGGAAATTGAGTCTGAGGTTCATCAGACCCTATCACATCATGAAGAGAGTGG
188 AGTTGGCCGCCAAGGGAAACTGAGTCTGAGGTTCACCAGACCCTATCACATCATGAAGAGAGTGG
* * *
21132697 GACTAGTGGCACATCAACTTGAGTTACCTCCAAAGTTGGATCGTATCCATGACGTTTTCATGTGT
253 GACCAGTGGCACATCAACTTGAGTTACCTCCAAAGTTGGATCATATCCACGACGTTTTCATGTGT
* * **
21132762 CCATGTTGAGAAGATACCAATTTGACCCTACCCATATAG-TTCTGATTGAGGAGATTGAGGTTTG
318 CCATGTTGAGAAGATACCAATTTGACCCTACCCATATAGTTTC-GATTAAGGAGATTAAGGTTCA
*
21132826 A-CTGAATTTTTCATTTGATGAGGAACCGATACAGATCCTCGATCATGACGTCAAAGTTTTACGA
382 ATC-GAATTTGTCATTTGATGAGGAACCGATACAGATCCTCGATCATGACGTCAAAGTTTTACGA
* * * *
21132890 AGGAAGAAGGTTCCACTTGTGAAAGTTTTGTGGATGAATCACAGCTCTAATGAGGCCACTTGGGA
446 AGGAAGAAGATTCCACTTGTGAAAGTTTTGTGGAGGAATCACAGCTCTAATGAGACCACTTGAGA
*
21132955 GCCGAAATATTTAATGCGTCAATAATATCCTCACCTTTTTCCATCAGGTAAATTTCGAGGAAGAA
511 GCCGAAATATTTAATGCGTCAACAATATCCTCACCTTTTTCCATCAGGTAAATTTCGAGGAAGAA
*
21133020 ATTTTTATAATGAGGGTA
576 ATTTTTATAAGGAGGGTA
*
21133038 GGGTTG
1 GAGTTG
21133044 TCGCATCCCA
Statistics
Matches: 525, Mismatches: 71, Indels: 13
0.86 0.12 0.02
Matches are distributed among these distances:
592 3 0.01
593 143 0.27
594 1 0.00
599 4 0.01
600 374 0.71
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (593 bp):
GAGTTGGGGGAGAAGAAAGTATTAGGACCGGATCAACTGCAGAAGACTAAGAATAGAGTGAAAAT
TATTTGGGATCATTTAAAAGCGACATCTGACAAGCAAAAGTCTTATTCTGACCTGAAGAGGAAGG
ATATAGAGTTCAATATTGGTGAACGGGTCTTCCTTAAGGTTGGAAGAAAGTGTTAAGAGTTGGCC
GCCAAGGGAAACTGAGTCTGAGGTTCACCAGACCCTATCACATCATGAAGAGAGTGGGACCAGTG
GCACATCAACTTGAGTTACCTCCAAAGTTGGATCATATCCACGACGTTTTCATGTGTCCATGTTG
AGAAGATACCAATTTGACCCTACCCATATAGTTTCGATTAAGGAGATTAAGGTTCAATCGAATTT
GTCATTTGATGAGGAACCGATACAGATCCTCGATCATGACGTCAAAGTTTTACGAAGGAAGAAGA
TTCCACTTGTGAAAGTTTTGTGGAGGAATCACAGCTCTAATGAGACCACTTGAGAGCCGAAATAT
TTAATGCGTCAACAATATCCTCACCTTTTTCCATCAGGTAAATTTCGAGGAAGAAATTTTTATAA
GGAGGGTA
Found at i:21133444 original size:49 final size:49
Alignment explanation
Indices: 21133391--21133488 Score: 196
Period size: 49 Copynumber: 2.0 Consensus size: 49
21133381 ATTTGACTAA
21133391 GCTTCCACGCCCTTTGTTGTCCCTACCTCTTTCATTCTCCCATTTCTAT
1 GCTTCCACGCCCTTTGTTGTCCCTACCTCTTTCATTCTCCCATTTCTAT
21133440 GCTTCCACGCCCTTTGTTGTCCCTACCTCTTTCATTCTCCCATTTCTAT
1 GCTTCCACGCCCTTTGTTGTCCCTACCTCTTTCATTCTCCCATTTCTAT
21133489 CACTTTTCAT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.10, C:0.39, G:0.08, T:0.43
Consensus pattern (49 bp):
GCTTCCACGCCCTTTGTTGTCCCTACCTCTTTCATTCTCCCATTTCTAT
Found at i:21140765 original size:22 final size:22
Alignment explanation
Indices: 21140735--21140794 Score: 111
Period size: 22 Copynumber: 2.7 Consensus size: 22
21140725 AGCATTTTGC
21140735 TCCCTATGTTGCAACATCAAACT
1 TCCC-ATGTTGCAACATCAAACT
21140758 TCCCATGTTGCAACATCAAACT
1 TCCCATGTTGCAACATCAAACT
21140780 TCCCATGTTGCAACA
1 TCCCATGTTGCAACA
21140795 CAACGATCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
22 33 0.89
23 4 0.11
ACGTcount: A:0.30, C:0.32, G:0.10, T:0.28
Consensus pattern (22 bp):
TCCCATGTTGCAACATCAAACT
Found at i:21145183 original size:18 final size:18
Alignment explanation
Indices: 21145160--21145194 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
21145150 CAAGAATAGT
21145160 AAGCATCAAAATAGTTTC
1 AAGCATCAAAATAGTTTC
*
21145178 AAGCATGAAAATAGTTT
1 AAGCATCAAAATAGTTT
21145195 AGCACATCAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.11, G:0.14, T:0.29
Consensus pattern (18 bp):
AAGCATCAAAATAGTTTC
Found at i:21149646 original size:39 final size:39
Alignment explanation
Indices: 21149572--21149648 Score: 100
Period size: 39 Copynumber: 2.0 Consensus size: 39
21149562 CATATTCACT
* * **
21149572 TTTAAGCATGTATCACATTACACATATGGTCACATAACA
1 TTTAAGCATATATCACAATACACATATAATCACATAACA
* *
21149611 TTTAAGCATATATCACAATACTCATATAATTACATAAC
1 TTTAAGCATATATCACAATACACATATAATCACATAAC
21149649 GTTCAAACAT
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 32 1.00
ACGTcount: A:0.42, C:0.19, G:0.06, T:0.32
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACACATATAATCACATAACA
Found at i:21152740 original size:21 final size:21
Alignment explanation
Indices: 21152695--21152757 Score: 90
Period size: 21 Copynumber: 3.0 Consensus size: 21
21152685 TTTGAACCAT
* *
21152695 TACCAATTCGTACCAAATACCA
1 TACCATTTCGTACC-AATTCCA
21152717 TACCATTTCGTACCAATTCCA
1 TACCATTTCGTACCAATTCCA
*
21152738 TACCATTTCGAACCAATTCC
1 TACCATTTCGTACCAATTCC
21152758 CAAATACCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
21 25 0.66
22 13 0.34
ACGTcount: A:0.33, C:0.33, G:0.05, T:0.29
Consensus pattern (21 bp):
TACCATTTCGTACCAATTCCA
Found at i:21156188 original size:21 final size:23
Alignment explanation
Indices: 21156163--21156216 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
21156153 CCTTTTGCTC
21156163 TTTTTCATTCTCTTTTTCTT-T-T
1 TTTTTCATT-TCTTTTTCTTGTCT
*
21156185 TTTTTTATTTCTTTTTC-TGTCT
1 TTTTTCATTTCTTTTTCTTGTCT
21156207 TTCTTTCATT
1 TT-TTTCATT
21156217 ACAAGATAGA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 1 0.04
21 9 0.33
22 11 0.41
23 6 0.22
ACGTcount: A:0.06, C:0.17, G:0.02, T:0.76
Consensus pattern (23 bp):
TTTTTCATTTCTTTTTCTTGTCT
Found at i:21161483 original size:148 final size:148
Alignment explanation
Indices: 21161215--21161510 Score: 565
Period size: 148 Copynumber: 2.0 Consensus size: 148
21161205 ATCTAATCTT
21161215 CAAGCTTAGTCAATGTTTTTACTTAGTTGGTGCACTCAGACTGCTGATAACTCTTGAAAAGAGTT
1 CAAGCTTAGTCAATGTTTTTACTTAGTTGGTGCACTCAGACTGCTGATAACTCTTGAAAAGAGTT
21161280 ATATTTCATGCTTTTAGATTTAGTTAATTGCCTGTACTTAGGTACATTTAGTTGCATTTTAGGAT
66 ATATTTCATGCTTTTAGATTTAGTTAATTGCCTGTACTTAGGTACATTTAGTTGCATTTTAGGAT
21161345 ATTTCTTTAGTATTTTTC
131 ATTTCTTTAGTATTTTTC
*
21161363 CAAGCTTAGTCAATGTTTTTGCTTAGTTGGTGCACTCAGACTGCTGATAACTCTTGAAAAGAGTT
1 CAAGCTTAGTCAATGTTTTTACTTAGTTGGTGCACTCAGACTGCTGATAACTCTTGAAAAGAGTT
**
21161428 ATATTTCATGCTTTTAGATTTAGTTAATTGCCTGTACTTAGGTATGTTTAGTTGCATTTTAGGAT
66 ATATTTCATGCTTTTAGATTTAGTTAATTGCCTGTACTTAGGTACATTTAGTTGCATTTTAGGAT
21161493 ATTTCTTTAGTATTTTTC
131 ATTTCTTTAGTATTTTTC
21161511 TTGTTTTAAC
Statistics
Matches: 145, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
148 145 1.00
ACGTcount: A:0.24, C:0.13, G:0.18, T:0.45
Consensus pattern (148 bp):
CAAGCTTAGTCAATGTTTTTACTTAGTTGGTGCACTCAGACTGCTGATAACTCTTGAAAAGAGTT
ATATTTCATGCTTTTAGATTTAGTTAATTGCCTGTACTTAGGTACATTTAGTTGCATTTTAGGAT
ATTTCTTTAGTATTTTTC
Found at i:21170053 original size:24 final size:24
Alignment explanation
Indices: 21170008--21170053 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
21169998 ATCGTTACTT
* * **
21170008 AGCTTGTATGAGCTTATTGATTAC
1 AGCTTGTAAGAGCATACCGATTAC
21170032 AGCTTGTAAGAGCATACCGATT
1 AGCTTGTAAGAGCATACCGATT
21170054 CATAGCTCGT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (24 bp):
AGCTTGTAAGAGCATACCGATTAC
Found at i:21175567 original size:12 final size:12
Alignment explanation
Indices: 21175550--21175579 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
21175540 GTCATGCGTT
21175550 ACACGGCCTAGC
1 ACACGGCCTAGC
*
21175562 ACACGGCCTGGC
1 ACACGGCCTAGC
21175574 ACACGG
1 ACACGG
21175580 GCGTGTGGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.23, C:0.40, G:0.30, T:0.07
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:21178132 original size:16 final size:16
Alignment explanation
Indices: 21178111--21178141 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21178101 TTCCCTATTA
*
21178111 TGTCTTTTGTATTTTC
1 TGTCTTTTATATTTTC
21178127 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
21178142 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.10, C:0.10, G:0.10, T:0.71
Consensus pattern (16 bp):
TGTCTTTTATATTTTC
Found at i:21179791 original size:37 final size:39
Alignment explanation
Indices: 21179744--21179841 Score: 100
Period size: 37 Copynumber: 2.6 Consensus size: 39
21179734 CAAAAATAAT
* *
21179744 ATTATTTTAATAGTTTAATATTAAATTAA-ATT-TAGT-
1 ATTATCTTAATAGTTTAATATTAAATTAATATTAAAGTG
* *
21179780 ACTTATCTTAATAGTATT-TTATTAATTTAATATTAAAGTG
1 A-TTATCTTAATAGT-TTAATATTAAATTAATATTAAAGTG
21179820 ATTATCTTAATA-TTTAAT-TTAA
1 ATTATCTTAATAGTTTAATATTAA
21179842 TGTTTATCTT
Statistics
Matches: 51, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
36 1 0.02
37 28 0.55
38 7 0.14
39 14 0.27
40 1 0.02
ACGTcount: A:0.40, C:0.03, G:0.05, T:0.52
Consensus pattern (39 bp):
ATTATCTTAATAGTTTAATATTAAATTAATATTAAAGTG
Found at i:21182093 original size:24 final size:23
Alignment explanation
Indices: 21182060--21182117 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
21182050 AGTTGAAAAG
21182060 TATAA-AATAAAATAAATAATGATA
1 TATAATAATAAAAT-AAT-ATGATA
*
21182084 -ATAATAATAAAATGATATGATA
1 TATAATAATAAAATAATATGATA
21182106 TATATATAATAA
1 TATA-ATAATAA
21182118 TGTTTGATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 6 0.20
23 9 0.30
24 15 0.50
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TATAATAATAAAATAATATGATA
Found at i:21182470 original size:49 final size:48
Alignment explanation
Indices: 21182388--21182545 Score: 273
Period size: 49 Copynumber: 3.2 Consensus size: 48
21182378 CTTACTTTGA
*
21182388 GAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
21182435 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
21182484 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
21182533 GAATGTGATAAGT
1 GAATGTGA-AAGT
21182546 CCCGAAGGGC
Statistics
Matches: 106, Mismatches: 2, Indels: 3
0.95 0.02 0.03
Matches are distributed among these distances:
47 13 0.12
49 89 0.84
50 4 0.04
ACGTcount: A:0.31, C:0.08, G:0.31, T:0.30
Consensus pattern (48 bp):
GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:21182719 original size:37 final size:37
Alignment explanation
Indices: 21182663--21182741 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
21182653 CCGAGCTCTA
* * *
21182663 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
21182700 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
21182737 AAGAC
1 AAGAC
21182742 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:21184873 original size:13 final size:13
Alignment explanation
Indices: 21184855--21184892 Score: 76
Period size: 13 Copynumber: 2.9 Consensus size: 13
21184845 ACATAATCTC
21184855 ATGGCCTGCCACT
1 ATGGCCTGCCACT
21184868 ATGGCCTGCCACT
1 ATGGCCTGCCACT
21184881 ATGGCCTGCCAC
1 ATGGCCTGCCAC
21184893 CAGCGATAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.16, C:0.39, G:0.24, T:0.21
Consensus pattern (13 bp):
ATGGCCTGCCACT
Found at i:21190738 original size:29 final size:28
Alignment explanation
Indices: 21190706--21190767 Score: 70
Period size: 29 Copynumber: 2.2 Consensus size: 28
21190696 AAAAAGCCTT
21190706 TTTTTTCAAAATTTACCGAAATGGGCCGA
1 TTTTTTCAAAATTTACCGAAATGGGCC-A
* ** * *
21190735 TTTTTTGATTATTTACCGGAATGGTCCA
1 TTTTTTCAAAATTTACCGAAATGGGCCA
21190763 TTTTT
1 TTTTT
21190768 CGGGAAATCG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 6 0.21
29 22 0.79
ACGTcount: A:0.24, C:0.15, G:0.16, T:0.45
Consensus pattern (28 bp):
TTTTTTCAAAATTTACCGAAATGGGCCA
Found at i:21191244 original size:125 final size:126
Alignment explanation
Indices: 21190946--21191285 Score: 574
Period size: 125 Copynumber: 2.7 Consensus size: 126
21190936 CGTCTCTTGT
* * * *
21190946 CAAATAGTATAAAATCGCTTCTACCAGGATGCTATTTGAGAAGAATTTATGAAATCGCGCCCTCG
1 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
*
21191011 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTTCTGATTTTTCTGAG
66 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAA-TTTTTTTTCTGATGTTTCTGAG
*
21191073 CAAATAGTATAAAATCGTTTCTATGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
1 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
21191138 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAA-TTTTTTTCTGATGTTTCTGAG
66 TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTCTGATGTTTCTGAG
* * *
21191198 CAAATAGTATAAAATCATTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCACCTTCG
1 CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
*
21191263 TGGATGCGATTTTGCTACAGTAG
66 TGGACGCGATTTTGCTACAGTAG
21191286 CAAGTTTGGG
Statistics
Matches: 202, Mismatches: 11, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
125 103 0.51
127 99 0.49
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.34
Consensus pattern (126 bp):
CAAATAGTATAAAATCGTTTCTACGAGGATGCTATTTGAGAAGAAATTGTGAAATCGCGCCCTCG
TGGACGCGATTTTGCTACAGTAGGTCATGTAAGAAATAATTTTTTTTCTGATGTTTCTGAG
Found at i:21194282 original size:10 final size:10
Alignment explanation
Indices: 21194267--21194291 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
21194257 CAGACCTAAC
21194267 ATTATGTAAA
1 ATTATGTAAA
21194277 ATTATGTAAA
1 ATTATGTAAA
21194287 ATTAT
1 ATTAT
21194292 TAAGCCAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (10 bp):
ATTATGTAAA
Found at i:21194407 original size:55 final size:56
Alignment explanation
Indices: 21194274--21194415 Score: 155
Period size: 56 Copynumber: 2.5 Consensus size: 56
21194264 AACATTATGT
* *
21194274 AAAATTATGTAAAATTATTAAGCCAAAAATTTTTTTCTTAATGGTTAGTAAAATTTATC
1 AAAA-TATGTAAAATTATTAAGCCAAAAA--TTTGTCTTAATGGTTAGTAAAATGTATC
* * * * *
21194333 -AAATAATCTCAAATTATTAAGTCCAAAAA-TTGTGTTAATGGTTATTAAAGTGT-TC
1 AAAAT-ATGTAAAATTATTAAG-CCAAAAATTTGTCTTAATGGTTAGTAAAATGTATC
21194388 AAAATATGTAAAATTATTAAGCCAAAAA
1 AAAATATGTAAAATTATTAAGCCAAAAA
21194416 AATTTAGGTT
Statistics
Matches: 71, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
54 7 0.10
55 16 0.23
56 23 0.32
57 1 0.01
58 17 0.24
59 7 0.10
ACGTcount: A:0.45, C:0.08, G:0.10, T:0.37
Consensus pattern (56 bp):
AAAATATGTAAAATTATTAAGCCAAAAATTTGTCTTAATGGTTAGTAAAATGTATC
Found at i:21194520 original size:57 final size:57
Alignment explanation
Indices: 21194416--21199472 Score: 7129
Period size: 57 Copynumber: 88.8 Consensus size: 57
21194406 AAGCCAAAAA
* *
21194416 AATTTAGGTTAGTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21194473 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* ** * *
21194530 AATTTAGGTTAGGTTTAGGGTTTTTTGTTAATTTAGATTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21194588 AATTTAGGTTAGATTAGGGTTTTAAATTCATTTAGGTAAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21194645 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAAGTTTAGGG-TTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21194701 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21194758 AATTTAGGTTACATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21194815 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21194872 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* **
21194928 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * **
21194986 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAAGTTTAGGGTTTTTTGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * **
21195044 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195102 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21195159 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * **
21195216 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21195274 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21195331 AATTTAGGTTAGCTTTAGGGTTTTTAGTTAATTTAGGTTAGATTT-GGGTTTTTAATT
1 AATTTAGGTTAG-ATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * * *
21195388 AATTAAGGTTAAGTTTAGGGTTTTTAATTAATTTAGGCTA-GATTAGGGGTTTTAATT
1 AATTTAGGTT-AGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * * *
21195445 AATTTAGGTTAGGTTTACGGTTTTTAGTTAATTTA----ACGATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195499 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21195556 AATTTAAGTTAGATTAGGGTCTTTAATTAATTTAGGTTAGGTTTAGGTTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195613 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195670 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * *
21195726 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGCTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21195783 AATTTAGCTTAGATTAGAGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* ** *
21195840 AATTTAAGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTTGTC
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21195897 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21195955 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21196012 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21196069 AATTTAGGTTAGGTTTAGGTTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21196126 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196183 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21196240 AATTTAGCTTAGATTAGGGTTTTTAATTAATTTAGCTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * *
21196296 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTCAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21196354 AATTTAGGTTAGATTATGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21196411 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGG-TTAGGGTTTTTTGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * **
21196467 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196525 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21196582 AATTTAGGTTAGGTTTAGGG-TTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * **
21196638 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21196696 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * * *
21196753 AATTTCGGTTAGCTTTAGGGTTTTTAGTTAATTTAGGTTAGATTT-GAGTTTTTAATT
1 AATTTAGGTTAG-ATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * * *
21196810 AATTAAGGTTAAGTTTAGGGTTTTTAATTAATTTAGGCTA-GATTAGGGGTTTTAATT
1 AATTTAGGTT-AGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * *
21196867 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTA----ACGATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196921 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
** * *
21196978 AATTTAAATTAGATTAGGGTCTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197035 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGTTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197092 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21197149 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * * *
21197206 AATTCAGGTTAGGTTTAGGGTTTTTAGTTAATTTTGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197263 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21197320 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * **
21197377 AATTTTGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197435 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21197492 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * **
21197549 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21197607 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21197664 AATTTAGGTTAGCTTTAGGGTTTTTAGTTAATTTAGGTTAGATTT-GGGTTTTTAATT
1 AATTTAGGTTAG-ATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * *
21197721 AATTAAGGTTA-ACTTTAGGGTTTTTAATTAATTTAGGCTA-GATTAGGGGTTTTAATT
1 AATTTAGGTTAGA--TTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * *
21197778 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTA----ACGATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197832 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGG-TTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21197888 AATTTAAGTTAGATTAGGGTCTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197945 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGTTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21198002 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
21198059 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTA--TATTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGT-TTAGGGTTTTTAATT
* * * *
21198115 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGCTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21198172 AATTTAGCTTAGATTAGAGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * ** *
21198229 AAATTAAGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTTGTC
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21198286 AATTTAGGTTACGTTTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * ** *
21198344 AATTTAGGTTAGGTTTAAGGTTTTTTGTTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
21198402 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * *
21198459 AGTTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21198516 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198573 AATTTAGGTTAGATTAGAGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198630 AATTTAAGTTAGATTAGGGTTTTTAATTAATTTAGATTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * *
21198687 AATTTAAGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198744 AATTTAGGTTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTCAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* ** * *
21198801 AATTTAGGTTAGGTTTAGGGTTTTTAGCTAATTTAGG-TAAGATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198858 AATTTAGATTAGATTAGGGTTTTTAGTTAATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198915 AATTTATGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTACTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198972 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * * *
21199029 AATTTAGGTTAGGTTTAGGGTTTTTAGTTAATTTAGGTTA-GATTAAGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21199086 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTA-GCTTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21199142 AATTTAGGTTAGGTTTAGGGTTTTTAATTAATTTAGGTTA-GATTAGGGTTTGTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
** * *
21199199 AATTTAGGTTAGATTTAGGGTTTTTTGTTAATTTAGGTTAGGTTTAGGGGTTTTAGTT
1 AATTTAGGTTAGA-TTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
** *
21199257 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTA-AATTAGGGTTTTTAGTT
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21199313 AATTTAGGTTAGGTTTAGTGTTTTTAATTAATTTAGGTTA--TATTAGGATTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGT-TTAGGGTTTTTAATT
* * **
21199370 AATTTAGGTTAGGTTTAGGG-TTTTAGTTAATTTAGGTTA-AATTAGGGTTTTTAATT
1 AATTTAGGTTA-GATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21199426 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGGTTAGG
1 AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGG
21199473 TTAGGGTTTT
Statistics
Matches: 4595, Mismatches: 332, Indels: 146
0.91 0.07 0.03
Matches are distributed among these distances:
53 68 0.01
54 81 0.02
55 8 0.00
56 589 0.13
57 2974 0.65
58 875 0.19
ACGTcount: A:0.25, C:0.01, G:0.24, T:0.51
Consensus pattern (57 bp):
AATTTAGGTTAGATTAGGGTTTTTAATTAATTTAGGTTAGGTTTAGGGTTTTTAATT
Found at i:21197713 original size:11 final size:10
Alignment explanation
Indices: 21194416--21199464 Score: 377
Period size: 9 Copynumber: 532.1 Consensus size: 10
21194406 AAGCCAAAAA
21194416 AATTTAGGTT
1 AATTTAGGTT
*
21194426 AGTTTAGGGTT
1 AATTTA-GGTT
*
21194437 --TTTA-ATT
1 AATTTAGGTT
21194444 AATTTAGGTT
1 AATTTAGGTT
*
21194454 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21194466 --TTTA-GTT
1 AATTTAGGTT
21194473 AATTTAGGTT
1 AATTTAGGTT
*
21194483 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21194495 --TTTA-GTT
1 AATTTAGGTT
21194502 AATTTAGGTT
1 AATTTAGGTT
21194512 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21194523 --TTTA-ATT
1 AATTTAGGTT
21194530 AATTTAGGTT
1 AATTTAGGTT
*
21194540 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21194552 --TTT-TGTT
1 AATTTAGGTT
*
21194559 AATTTAGATT
1 AATTTAGGTT
*
21194569 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21194581 --TTTA-GTT
1 AATTTAGGTT
21194588 AATTTAGGTT
1 AATTTAGGTT
*
21194598 AGA-TTAGGGT
1 A-ATTTAGGTT
**
21194608 --TTTAAATT
1 AATTTAGGTT
*
21194616 CATTTAGG-T
1 AATTTAGGTT
21194625 AAGGTTTAGGGTT
1 AA--TTTA-GGTT
*
21194638 --TTTA-ATT
1 AATTTAGGTT
21194645 AATTTAGGTT
1 AATTTAGGTT
21194655 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21194666 --TTTA-ATT
1 AATTTAGGTT
21194673 AATTTAGGTT
1 AATTTAGGTT
*
21194683 AAGTTTAGGGT
1 AA-TTTAGGTT
21194694 --TTTA-GTT
1 AATTTAGGTT
21194701 AATTTAGGTT
1 AATTTAGGTT
*
21194711 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21194723 --TTTA-GTT
1 AATTTAGGTT
21194730 AATTTAGGTT
1 AATTTAGGTT
21194740 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21194751 --TTTA-ATT
1 AATTTAGGTT
21194758 AATTTAGGTT
1 AATTTAGGTT
21194768 ACA-TTAGGGTT
1 A-ATTTA-GGTT
21194779 --TTTA-GTT
1 AATTTAGGTT
21194786 AATTTAGGTT
1 AATTTAGGTT
*
21194796 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21194808 --TTTA-ATT
1 AATTTAGGTT
21194815 AATTTAGGTT
1 AATTTAGGTT
21194825 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21194836 --TTTA-ATT
1 AATTTAGGTT
21194843 AATTTAGGTT
1 AATTTAGGTT
*
21194853 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21194865 --TTTA-GTT
1 AATTTAGGTT
21194872 AATTTAGGTT
1 AATTTAGGTT
21194882 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21194893 --TTTA-ATT
1 AATTTAGGTT
21194900 AATTTAGGTT
1 AATTTAGGTT
21194910 AGA-TTAGGGTT
1 A-ATTTA-GGTT
21194921 --TTTA-GTT
1 AATTTAGGTT
21194928 AATTTAGGTT
1 AATTTAGGTT
*
21194938 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21194950 --TTTA-ATT
1 AATTTAGGTT
21194957 AATTTAGGTT
1 AATTTAGGTT
*
21194967 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21194979 --TTT-TGTT
1 AATTTAGGTT
21194986 AATTTAGGTT
1 AATTTAGGTT
*
21194996 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21195008 --TTTA-GTT
1 AATTTAGGTT
21195015 AATTTAGGTT
1 AATTTAGGTT
21195025 AAGTTTAGGGTT
1 AA-TTTA-GGTT
*
21195037 --TTT-TGTT
1 AATTTAGGTT
21195044 AATTTAGGTT
1 AATTTAGGTT
*
21195054 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21195066 --TTTA-GTT
1 AATTTAGGTT
21195073 AATTTAGGTT
1 AATTTAGGTT
*
21195083 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21195095 --TTT-TGTT
1 AATTTAGGTT
21195102 AATTTAGGTT
1 AATTTAGGTT
21195112 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21195123 --TTTA-ATT
1 AATTTAGGTT
21195130 AATTTAGGTT
1 AATTTAGGTT
*
21195140 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21195152 --TTTA-GTT
1 AATTTAGGTT
21195159 AATTTAGGTT
1 AATTTAGGTT
21195169 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21195180 --TTTA-ATT
1 AATTTAGGTT
21195187 AATTTAGGTT
1 AATTTAGGTT
*
21195197 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21195209 --TTT-TGTT
1 AATTTAGGTT
21195216 AATTTAGGTT
1 AATTTAGGTT
*
21195226 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21195238 --TTTA-GTT
1 AATTTAGGTT
21195245 AATTTAGGTT
1 AATTTAGGTT
*
21195255 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21195267 --TTT-TGTT
1 AATTTAGGTT
21195274 AATTTAGGTT
1 AATTTAGGTT
21195284 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21195295 --TTTA-ATT
1 AATTTAGGTT
21195302 AATTTAGGTT
1 AATTTAGGTT
*
21195312 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21195324 --TTT-TGTT
1 AATTTAGGTT
21195331 AATTTAGGTT
1 AATTTAGGTT
*
21195341 AGCTTTAGGGTT
1 A-ATTTA-GGTT
21195353 --TTTA-GTT
1 AATTTAGGTT
21195360 AATTTAGGTT
1 AATTTAGGTT
*
21195370 AGATTTGGGTT
1 A-ATTTAGGTT
*
21195381 --TTTA-ATT
1 AATTTAGGTT
*
21195388 AATTAAGGTT
1 AATTTAGGTT
21195398 AAGTTTAGGGTT
1 AA-TTTA-GGTT
*
21195410 --TTTA-ATT
1 AATTTAGGTT
*
21195417 AATTTAGGCT
1 AATTTAGGTT
*
21195427 AGA-TTAGGGGT
1 A-ATTTA-GGTT
*
21195438 --TTTA-ATT
1 AATTTAGGTT
21195445 AATTTAGGTT
1 AATTTAGGTT
*
21195455 AGGTTTACGGTT
1 A-ATTTA-GGTT
21195467 --TTTA-GTT
1 AATTTAGGTT
*
21195474 AATTTAACG--
1 AATTT-AGGTT
21195483 -A-TTAGGGTT
1 AATTTA-GGTT
*
21195492 --TTTA-ATT
1 AATTTAGGTT
21195499 AATTTAGGTT
1 AATTTAGGTT
21195509 AGA-TTAGGGTT
1 A-ATTTA-GGTT
21195520 --TTTA-GTT
1 AATTTAGGTT
21195527 AATTTAGGTT
1 AATTTAGGTT
*
21195537 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21195549 --TTTA-ATT
1 AATTTAGGTT
*
21195556 AATTTAAGTT
1 AATTTAGGTT
*
21195566 AGA-TTAGGGT
1 A-ATTTAGGTT
* *
21195576 -CTTTA-ATT
1 AATTTAGGTT
21195584 AATTTAGGTT
1 AATTTAGGTT
*
21195594 AGGTTTAGGTT
1 A-ATTTAGGTT
* *
21195605 -TTTTA-ATT
1 AATTTAGGTT
21195613 AATTTAGGTT
1 AATTTAGGTT
21195623 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21195634 --TTTA-ATT
1 AATTTAGGTT
21195641 AATTTAGGTT
1 AATTTAGGTT
*
21195651 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21195663 --TTTA-GTT
1 AATTTAGGTT
21195670 AATTTAGGTT
1 AATTTAGGTT
21195680 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21195691 --TTTA-ATT
1 AATTTAGGTT
21195698 AATTTAGGTT
1 AATTTAGGTT
21195708 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21195719 --TTTA-ATT
1 AATTTAGGTT
21195726 AATTTAGGTT
1 AATTTAGGTT
*
21195736 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21195748 --TTTA-GTT
1 AATTTAGGTT
*
21195755 AATTTAGCTT
1 AATTTAGGTT
21195765 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21195776 --TTTA-ATT
1 AATTTAGGTT
*
21195783 AATTTAGCTT
1 AATTTAGGTT
21195793 AGA-TTAGAGTT
1 A-ATTTAG-GTT
*
21195804 --TTTA-ATT
1 AATTTAGGTT
21195811 AATTTAGGTT
1 AATTTAGGTT
*
21195821 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21195833 --TTTA-GTT
1 AATTTAGGTT
*
21195840 AATTTAAGTT
1 AATTTAGGTT
21195850 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21195861 --TTTA-ATT
1 AATTTAGGTT
21195868 AATTTAGGTT
1 AATTTAGGTT
*
21195878 AGGTTTAGGGTT
1 A-ATTTA-GGTT
* *
21195890 --TTT-TGTC
1 AATTTAGGTT
21195897 AATTTAGGTT
1 AATTTAGGTT
*
21195907 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21195919 --TTTA-GTT
1 AATTTAGGTT
21195926 AATTTAGGTT
1 AATTTAGGTT
*
21195936 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21195948 --TTTA-GTT
1 AATTTAGGTT
21195955 AATTTAGGTT
1 AATTTAGGTT
*
21195965 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21195977 --TTTA-GTT
1 AATTTAGGTT
21195984 AATTTAGGTT
1 AATTTAGGTT
21195994 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21196005 --TTTA-ATT
1 AATTTAGGTT
21196012 AATTTAGGTT
1 AATTTAGGTT
*
21196022 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21196034 --TTTA-GTT
1 AATTTAGGTT
21196041 AATTTAGGTT
1 AATTTAGGTT
21196051 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21196062 --TTTA-ATT
1 AATTTAGGTT
21196069 AATTTAGGTT
1 AATTTAGGTT
*
21196079 AGGTTTAGGTT
1 A-ATTTAGGTT
* *
21196090 -TTTTA-ATT
1 AATTTAGGTT
21196098 AATTTAGGTT
1 AATTTAGGTT
21196108 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21196119 --TTTA-ATT
1 AATTTAGGTT
21196126 AATTTAGGTT
1 AATTTAGGTT
*
21196136 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21196148 --TTTA-GTT
1 AATTTAGGTT
21196155 AATTTAGGTT
1 AATTTAGGTT
21196165 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21196176 --TTTA-ATT
1 AATTTAGGTT
21196183 AATTTAGGTT
1 AATTTAGGTT
21196193 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21196204 --TTTA-ATT
1 AATTTAGGTT
21196211 AATTTAGGTT
1 AATTTAGGTT
*
21196221 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21196233 --TTTA-GTT
1 AATTTAGGTT
*
21196240 AATTTAGCTT
1 AATTTAGGTT
21196250 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21196261 --TTTA-ATT
1 AATTTAGGTT
*
21196268 AATTTAGCTT
1 AATTTAGGTT
21196278 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21196289 --TTTA-ATT
1 AATTTAGGTT
21196296 AATTTAGGTT
1 AATTTAGGTT
*
21196306 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21196318 --TTTA-GTT
1 AATTTAGGTT
*
21196325 AATTCAGGTT
1 AATTTAGGTT
*
21196335 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21196347 --TTTA-GTT
1 AATTTAGGTT
21196354 AATTTAGGTT
1 AATTTAGGTT
21196364 AGA-TTATGGTT
1 A-ATTTA-GGTT
21196375 --TTTA-GTT
1 AATTTAGGTT
21196382 AATTTAGGTT
1 AATTTAGGTT
*
21196392 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21196404 --TTTA-ATT
1 AATTTAGGTT
21196411 AATTTAGGTT
1 AATTTAGGTT
21196421 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21196432 --TTTA-ATT
1 AATTTAGGTT
21196439 AATTTAGGTT
1 AATTTAGGTT
**
21196449 AGGTTAGGGTT
1 AATTTA-GGTT
*
21196460 --TTT-TGTT
1 AATTTAGGTT
21196467 AATTTAGGTT
1 AATTTAGGTT
*
21196477 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21196489 --TTTA-GTT
1 AATTTAGGTT
21196496 AATTTAGGTT
1 AATTTAGGTT
*
21196506 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21196518 --TTT-TGTT
1 AATTTAGGTT
21196525 AATTTAGGTT
1 AATTTAGGTT
21196535 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21196546 --TTTA-ATT
1 AATTTAGGTT
21196553 AATTTAGGTT
1 AATTTAGGTT
*
21196563 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21196575 --TTTA-GTT
1 AATTTAGGTT
21196582 AATTTAGGTT
1 AATTTAGGTT
* *
21196592 AGGTTTAGGGT
1 A-ATTTAGGTT
21196603 --TTTA-GTT
1 AATTTAGGTT
21196610 AATTTAGGTT
1 AATTTAGGTT
21196620 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21196631 --TTTA-ATT
1 AATTTAGGTT
21196638 AATTTAGGTT
1 AATTTAGGTT
*
21196648 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21196660 --TTTA-GTT
1 AATTTAGGTT
21196667 AATTTAGGTT
1 AATTTAGGTT
*
21196677 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21196689 --TTT-TGTT
1 AATTTAGGTT
21196696 AATTTAGGTT
1 AATTTAGGTT
21196706 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21196717 --TTTA-ATT
1 AATTTAGGTT
21196724 AATTTAGGTT
1 AATTTAGGTT
*
21196734 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21196746 --TTT-TGTT
1 AATTTAGGTT
*
21196753 AATTTCGGTT
1 AATTTAGGTT
*
21196763 AGCTTTAGGGTT
1 A-ATTTA-GGTT
21196775 --TTTA-GTT
1 AATTTAGGTT
21196782 AATTTAGGTT
1 AATTTAGGTT
21196792 AGATTT-GAGTT
1 A-ATTTAG-GTT
*
21196803 --TTTA-ATT
1 AATTTAGGTT
*
21196810 AATTAAGGTT
1 AATTTAGGTT
21196820 AAGTTTAGGGTT
1 AA-TTTA-GGTT
*
21196832 --TTTA-ATT
1 AATTTAGGTT
*
21196839 AATTTAGGCT
1 AATTTAGGTT
*
21196849 AGA-TTAGGGGT
1 A-ATTTA-GGTT
*
21196860 --TTTA-ATT
1 AATTTAGGTT
21196867 AATTTAGGTT
1 AATTTAGGTT
*
21196877 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21196889 --TTTA-GTT
1 AATTTAGGTT
*
21196896 AATTTAACG--
1 AATTT-AGGTT
21196905 -A-TTAGGGTT
1 AATTTA-GGTT
*
21196914 --TTTA-ATT
1 AATTTAGGTT
21196921 AATTTAGGTT
1 AATTTAGGTT
21196931 AGA-TTAGGGTT
1 A-ATTTA-GGTT
21196942 --TTTA-GTT
1 AATTTAGGTT
21196949 AATTTAGGTT
1 AATTTAGGTT
*
21196959 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21196971 --TTTA-ATT
1 AATTTAGGTT
**
21196978 AATTTAAATT
1 AATTTAGGTT
*
21196988 AGA-TTAGGGT
1 A-ATTTAGGTT
* *
21196998 -CTTTA-ATT
1 AATTTAGGTT
21197006 AATTTAGGTT
1 AATTTAGGTT
*
21197016 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21197028 --TTTA-GTT
1 AATTTAGGTT
21197035 AATTTAGGTT
1 AATTTAGGTT
21197045 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21197056 --TTTA-ATT
1 AATTTAGGTT
21197063 AATTTAGGTT
1 AATTTAGGTT
*
21197073 AGGTTTAGGTT
1 A-ATTTAGGTT
* *
21197084 -TTTTA-ATT
1 AATTTAGGTT
21197092 AATTTAGGTT
1 AATTTAGGTT
21197102 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21197113 --TTTA-ATT
1 AATTTAGGTT
21197120 AATTTAGGTT
1 AATTTAGGTT
*
21197130 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21197142 --TTTA-GTT
1 AATTTAGGTT
21197149 AATTTAGGTT
1 AATTTAGGTT
*
21197159 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21197171 --TTTA-ATT
1 AATTTAGGTT
21197178 AATTTAGGTT
1 AATTTAGGTT
21197188 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21197199 --TTTA-ATT
1 AATTTAGGTT
*
21197206 AATTCAGGTT
1 AATTTAGGTT
*
21197216 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21197228 --TTTA-GTT
1 AATTTAGGTT
*
21197235 AATTTTGGTT
1 AATTTAGGTT
21197245 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21197256 --TTTA-ATT
1 AATTTAGGTT
21197263 AATTTAGGTT
1 AATTTAGGTT
21197273 AGA-TTAGGGTT
1 A-ATTTA-GGTT
21197284 --TTTA-GTT
1 AATTTAGGTT
21197291 AATTTAGGTT
1 AATTTAGGTT
*
21197301 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21197313 --TTTA-ATT
1 AATTTAGGTT
21197320 AATTTAGGTT
1 AATTTAGGTT
21197330 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21197341 --TTTA-ATT
1 AATTTAGGTT
21197348 AATTTAGGTT
1 AATTTAGGTT
*
21197358 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21197370 --TTT-TGTT
1 AATTTAGGTT
*
21197377 AATTTTGGTT
1 AATTTAGGTT
*
21197387 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21197399 --TTTA-GTT
1 AATTTAGGTT
21197406 AATTTAGGTT
1 AATTTAGGTT
*
21197416 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21197428 --TTT-TGTT
1 AATTTAGGTT
21197435 AATTTAGGTT
1 AATTTAGGTT
21197445 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21197456 --TTTA-ATT
1 AATTTAGGTT
21197463 AATTTAGGTT
1 AATTTAGGTT
*
21197473 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21197485 --TTTA-GTT
1 AATTTAGGTT
21197492 AATTTAGGTT
1 AATTTAGGTT
21197502 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21197513 --TTTA-ATT
1 AATTTAGGTT
21197520 AATTTAGGTT
1 AATTTAGGTT
*
21197530 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21197542 --TTT-TGTT
1 AATTTAGGTT
21197549 AATTTAGGTT
1 AATTTAGGTT
*
21197559 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21197571 --TTTA-GTT
1 AATTTAGGTT
21197578 AATTTAGGTT
1 AATTTAGGTT
*
21197588 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21197600 --TTT-TGTT
1 AATTTAGGTT
21197607 AATTTAGGTT
1 AATTTAGGTT
21197617 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21197628 --TTTA-ATT
1 AATTTAGGTT
21197635 AATTTAGGTT
1 AATTTAGGTT
*
21197645 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21197657 --TTT-TGTT
1 AATTTAGGTT
21197664 AATTTAGGTT
1 AATTTAGGTT
*
21197674 AGCTTTAGGGTT
1 A-ATTTA-GGTT
21197686 --TTTA-GTT
1 AATTTAGGTT
21197693 AATTTAGGTT
1 AATTTAGGTT
*
21197703 AGATTTGGGTT
1 A-ATTTAGGTT
*
21197714 --TTTA-ATT
1 AATTTAGGTT
*
21197721 AATTAAGGTT
1 AATTTAGGTT
21197731 AACTTTAGGGTT
1 AA-TTTA-GGTT
*
21197743 --TTTA-ATT
1 AATTTAGGTT
*
21197750 AATTTAGGCT
1 AATTTAGGTT
*
21197760 AGA-TTAGGGGT
1 A-ATTTA-GGTT
*
21197771 --TTTA-ATT
1 AATTTAGGTT
21197778 AATTTAGGTT
1 AATTTAGGTT
*
21197788 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21197800 --TTTA-GTT
1 AATTTAGGTT
*
21197807 AATTTAACG--
1 AATTT-AGGTT
21197816 -A-TTAGGGTT
1 AATTTA-GGTT
*
21197825 --TTTA-ATT
1 AATTTAGGTT
21197832 AATTTAGGTT
1 AATTTAGGTT
21197842 AGA-TTAGGGTT
1 A-ATTTA-GGTT
21197853 --TTTA-GTT
1 AATTTAGGTT
21197860 AATTTAGGTT
1 AATTTAGGTT
* *
21197870 AGGTTTAGGGT
1 A-ATTTAGGTT
*
21197881 --TTTA-ATT
1 AATTTAGGTT
*
21197888 AATTTAAGTT
1 AATTTAGGTT
*
21197898 AGA-TTAGGGT
1 A-ATTTAGGTT
* *
21197908 -CTTTA-ATT
1 AATTTAGGTT
21197916 AATTTAGGTT
1 AATTTAGGTT
*
21197926 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21197938 --TTTA-GTT
1 AATTTAGGTT
21197945 AATTTAGGTT
1 AATTTAGGTT
21197955 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21197966 --TTTA-ATT
1 AATTTAGGTT
21197973 AATTTAGGTT
1 AATTTAGGTT
*
21197983 AGGTTTAGGTT
1 A-ATTTAGGTT
* *
21197994 -TTTTA-ATT
1 AATTTAGGTT
21198002 AATTTAGGTT
1 AATTTAGGTT
21198012 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21198023 --TTTA-ATT
1 AATTTAGGTT
21198030 AATTTAGGTT
1 AATTTAGGTT
*
21198040 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21198052 --TTTA-GTT
1 AATTTAGGTT
21198059 AATTTAGGTT
1 AATTTAGGTT
21198069 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21198080 --TTTA-ATT
1 AATTTAGGTT
21198087 AATTTAGGTT
1 AATTTAGGTT
21198097 -ATATTAGGGTT
1 AAT-TTA-GGTT
*
21198108 --TTTA-ATT
1 AATTTAGGTT
21198115 AATTTAGGTT
1 AATTTAGGTT
*
21198125 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21198137 --TTTA-GTT
1 AATTTAGGTT
*
21198144 AATTTAGCTT
1 AATTTAGGTT
21198154 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21198165 --TTTA-ATT
1 AATTTAGGTT
*
21198172 AATTTAGCTT
1 AATTTAGGTT
21198182 AGA-TTAGAGTT
1 A-ATTTAG-GTT
*
21198193 --TTTA-ATT
1 AATTTAGGTT
21198200 AATTTAGGTT
1 AATTTAGGTT
*
21198210 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21198222 --TTTA-GTT
1 AATTTAGGTT
* *
21198229 AAATTAAGTT
1 AATTTAGGTT
21198239 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21198250 --TTTA-ATT
1 AATTTAGGTT
21198257 AATTTAGGTT
1 AATTTAGGTT
*
21198267 AGGTTTAGGGTT
1 A-ATTTA-GGTT
* *
21198279 --TTT-TGTC
1 AATTTAGGTT
21198286 AATTTAGGTT
1 AATTTAGGTT
*
21198296 ACGTTTAGGGTT
1 A-ATTTA-GGTT
21198308 --TTTA-GTT
1 AATTTAGGTT
21198315 AATTTAGGTT
1 AATTTAGGTT
*
21198325 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21198337 --TTTA-GTT
1 AATTTAGGTT
21198344 AATTTAGGTT
1 AATTTAGGTT
*
21198354 AGGTTTAAGGTT
1 A-ATTT-AGGTT
*
21198366 --TTT-TGTT
1 AATTTAGGTT
21198373 AATTTAGGTT
1 AATTTAGGTT
*
21198383 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21198395 --TTTA-GTT
1 AATTTAGGTT
21198402 AATTTAGGTT
1 AATTTAGGTT
21198412 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21198423 --TTTA-ATT
1 AATTTAGGTT
21198430 AATTTAGGTT
1 AATTTAGGTT
*
21198440 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21198452 --TTTA-ATT
1 AATTTAGGTT
*
21198459 AGTTTAGGTT
1 AATTTAGGTT
*
21198469 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21198481 --TTTA-GTT
1 AATTTAGGTT
21198488 AATTTAGGTT
1 AATTTAGGTT
21198498 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21198509 --TTTA-ATT
1 AATTTAGGTT
21198516 AATTTAGGTT
1 AATTTAGGTT
21198526 AGA-TTAGGGTT
1 A-ATTTA-GGTT
21198537 --TTTA-GTT
1 AATTTAGGTT
21198544 AATTTAGGTT
1 AATTTAGGTT
*
21198554 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21198566 --TTTA-ATT
1 AATTTAGGTT
21198573 AATTTAGGTT
1 AATTTAGGTT
21198583 AGA-TTAGAGTT
1 A-ATTTAG-GTT
*
21198594 --TTTA-ATT
1 AATTTAGGTT
21198601 AATTTAGGTT
1 AATTTAGGTT
*
21198611 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21198623 --TTTA-GTT
1 AATTTAGGTT
*
21198630 AATTTAAGTT
1 AATTTAGGTT
21198640 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21198651 --TTTA-ATT
1 AATTTAGGTT
*
21198658 AATTTAGATT
1 AATTTAGGTT
*
21198668 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21198680 --TTTA-ATT
1 AATTTAGGTT
*
21198687 AATTTAAGTT
1 AATTTAGGTT
*
21198697 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21198709 --TTTA-GTT
1 AATTTAGGTT
21198716 AATTTAGGTT
1 AATTTAGGTT
21198726 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21198737 --TTTA-ATT
1 AATTTAGGTT
21198744 AATTTAGGTT
1 AATTTAGGTT
21198754 AGA-TTAGGGTT
1 A-ATTTA-GGTT
21198765 --TTTA-GTT
1 AATTTAGGTT
21198772 AATTTAGGTT
1 AATTTAGGTT
*
21198782 AGGTTTAGGGTT
1 A-ATTTA-GGTT
* *
21198794 --TTCA-ATT
1 AATTTAGGTT
21198801 AATTTAGGTT
1 AATTTAGGTT
*
21198811 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21198823 --TTTA-GCT
1 AATTTAGGTT
21198830 AATTTAGG-T
1 AATTTAGGTT
*
21198839 AAGATTAGGGTT
1 AA-TTTA-GGTT
*
21198851 --TTTA-ATT
1 AATTTAGGTT
*
21198858 AATTTAGATT
1 AATTTAGGTT
21198868 AGA-TTAGGGTT
1 A-ATTTA-GGTT
21198879 --TTTA-GTT
1 AATTTAGGTT
21198886 AATTTAGGTT
1 AATTTAGGTT
*
21198896 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21198908 --TTTA-ATT
1 AATTTAGGTT
*
21198915 AATTTATGTT
1 AATTTAGGTT
21198925 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21198936 --TTTA-ATT
1 AATTTAGGTT
21198943 AATTTAGGTT
1 AATTTAGGTT
*
21198953 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21198965 --TTTA-CTT
1 AATTTAGGTT
21198972 AATTTAGGTT
1 AATTTAGGTT
*
21198982 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21198994 --TTTA-ATT
1 AATTTAGGTT
21199001 AATTTAGGTT
1 AATTTAGGTT
21199011 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21199022 --TTTA-ATT
1 AATTTAGGTT
21199029 AATTTAGGTT
1 AATTTAGGTT
*
21199039 AGGTTTAGGGTT
1 A-ATTTA-GGTT
21199051 --TTTA-GTT
1 AATTTAGGTT
21199058 AATTTAGGTT
1 AATTTAGGTT
*
21199068 AGATTAAGGTT
1 A-ATTTAGGTT
*
21199079 --TTTA-ATT
1 AATTTAGGTT
21199086 AATTTAGGTT
1 AATTTAGGTT
21199096 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21199107 --TTTA-ATT
1 AATTTAGGTT
21199114 AATTTAGGTT
1 AATTTAGGTT
**
21199124 AGCTTAGGGTT
1 AATTTA-GGTT
21199135 --TTTA-GTT
1 AATTTAGGTT
21199142 AATTTAGGTT
1 AATTTAGGTT
*
21199152 AGGTTTAGGGTT
1 A-ATTTA-GGTT
*
21199164 --TTTA-ATT
1 AATTTAGGTT
21199171 AATTTAGGTT
1 AATTTAGGTT
21199181 AGA-TTAGGGTT
1 A-ATTTA-GGTT
* *
21199192 --TGTA-ATT
1 AATTTAGGTT
21199199 AATTTAGGTT
1 AATTTAGGTT
21199209 AGATTTAGGGTT
1 A-ATTTA-GGTT
*
21199221 --TTT-TGTT
1 AATTTAGGTT
21199228 AATTTAGGTT
1 AATTTAGGTT
* *
21199238 AGGTTTAGGGGT
1 A-ATTTA-GGTT
21199250 --TTTA-GTT
1 AATTTAGGTT
21199257 AATTTAGGTT
1 AATTTAGGTT
21199267 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21199278 --TTTA-ATT
1 AATTTAGGTT
21199285 AATTTAGGTT
1 AATTTAGGTT
*
21199295 AAATTAGGGTT
1 AATTTA-GGTT
21199306 --TTTA-GTT
1 AATTTAGGTT
21199313 AATTTAGGTT
1 AATTTAGGTT
*
21199323 AGGTTTAGTGTT
1 A-ATTTAG-GTT
*
21199335 --TTTA-ATT
1 AATTTAGGTT
21199342 AATTTAGGTT
1 AATTTAGGTT
21199352 -ATATTAGGATT
1 AAT-TTAGG-TT
*
21199363 --TTTA-ATT
1 AATTTAGGTT
21199370 AATTTAGGTT
1 AATTTAGGTT
* *
21199380 AGGTTTAGGGT
1 A-ATTTAGGTT
21199391 --TTTA-GTT
1 AATTTAGGTT
21199398 AATTTAGGTT
1 AATTTAGGTT
*
21199408 AAATTAGGGTT
1 AATTTA-GGTT
*
21199419 --TTTA-ATT
1 AATTTAGGTT
21199426 AATTTAGGTT
1 AATTTAGGTT
21199436 AGA-TTAGGGTT
1 A-ATTTA-GGTT
*
21199447 --TTTA-ATT
1 AATTTAGGTT
21199454 AATTTAGGTT
1 AATTTAGGTT
21199464 A
1 A
21199465 GGGTTAGGTT
Statistics
Matches: 3678, Mismatches: 424, Indels: 1874
0.62 0.07 0.31
Matches are distributed among these distances:
6 3 0.00
7 419 0.11
8 46 0.01
9 1255 0.34
10 844 0.23
11 767 0.21
12 343 0.09
13 1 0.00
ACGTcount: A:0.25, C:0.01, G:0.24, T:0.51
Consensus pattern (10 bp):
AATTTAGGTT
Found at i:21199474 original size:28 final size:29
Alignment explanation
Indices: 21194416--21199472 Score: 7068
Period size: 29 Copynumber: 177.7 Consensus size: 29
21194406 AAGCCAAAAA
21194416 AATTTAGGTTA-GTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21194444 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21194473 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21194502 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21194530 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21194559 AATTTAGATTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21194588 AATTTAGGTTA-GATTAGGGTTTTAAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21194616 CATTTAGGTAAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21194645 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21194673 AATTTAGGTTAAGTTTAGGG-TTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21194701 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21194730 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
** *
21194758 AATTTAGGTTA-CATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
21194786 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21194815 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21194843 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21194872 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21194900 AATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
21194928 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21194957 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21194986 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* **
21195015 AATTTAGGTTAAGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195044 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21195073 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195102 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195130 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195159 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21195187 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195216 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21195245 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195274 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21195302 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21195331 AATTTAGGTTAGCTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195360 AATTTAGGTTAGATTT-GGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21195388 AATTAAGGTTAAGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21195417 AATTTAGGCTA-GATTAGGGGTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21195445 AATTTAGGTTAGGTTTACGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21195474 AATTTA----ACGATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21195499 AATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
21195527 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21195556 AATTTAAGTTA-GATTAGGGTCTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195584 AATTTAGGTTAGGTTTAGGTTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195613 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195641 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195670 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195698 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195726 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21195755 AATTTAGCTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21195783 AATTTAGCTTA-GATTAGAGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195811 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21195840 AATTTAAGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
** *
21195868 AATTTAGGTTAGGTTTAGGGTTTTTTGTC
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195897 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195926 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195955 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21195984 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196012 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196041 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196069 AATTTAGGTTAGGTTTAGGTTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196098 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196126 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196155 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196183 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196211 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21196240 AATTTAGCTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21196268 AATTTAGCTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196296 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21196325 AATTCAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21196354 AATTTAGGTTA-GATTATGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
21196382 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196411 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21196439 AATTTAGGTTAGG-TTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196467 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21196496 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196525 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196553 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196582 AATTTAGGTTAGGTTTAGGG-TTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196610 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196638 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21196667 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196696 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21196724 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21196753 AATTTCGGTTAGCTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21196782 AATTTAGGTTAGATTT-GAGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21196810 AATTAAGGTTAAGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21196839 AATTTAGGCTA-GATTAGGGGTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21196867 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21196896 AATTTA----ACGATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21196921 AATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
21196949 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
** * *
21196978 AATTTAAATTA-GATTAGGGTCTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197006 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197035 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197063 AATTTAGGTTAGGTTTAGGTTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197092 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197120 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
21197149 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197178 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21197206 AATTCAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21197235 AATTTTGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21197263 AATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
21197291 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197320 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21197348 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21197377 AATTTTGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21197406 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197435 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197463 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197492 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21197520 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197549 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21197578 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197607 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21197635 AATTTAGGTTAGGTTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21197664 AATTTAGGTTAGCTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197693 AATTTAGGTTAGATTT-GGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* **
21197721 AATTAAGGTTAACTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21197750 AATTTAGGCTA-GATTAGGGGTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197778 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21197807 AATTTA----ACGATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21197832 AATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
21197860 AATTTAGGTTAGGTTTAGGG-TTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21197888 AATTTAAGTTA-GATTAGGGTCTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197916 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197945 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21197973 AATTTAGGTTAGGTTTAGGTTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21198002 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21198030 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21198059 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
21198087 AATTTAGGTTA--TATTAGGGTTTTTAATT
1 AATTTAGGTTAGGT-TTAGGGTTTTTAATT
*
21198115 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198144 AATTTAGCTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21198172 AATTTAGCTTA-GATTAGAGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21198200 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21198229 AAATTAAGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
** *
21198257 AATTTAGGTTAGGTTTAGGGTTTTTTGTC
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198286 AATTTAGGTTACGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21198315 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* **
21198344 AATTTAGGTTAGGTTTAAGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21198373 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21198402 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
21198430 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198459 AGTTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21198488 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198516 AATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
21198544 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198573 AATTTAGGTTA-GATTAGAGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21198601 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198630 AATTTAAGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21198658 AATTTAGATTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198687 AATTTAAGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21198716 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198744 AATTTAGGTTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21198772 AATTTAGGTTAGGTTTAGGGTTTTCAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21198801 AATTTAGGTTAGGTTTAGGGTTTTTAGCT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198830 AATTTAGG-TAAGATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* * *
21198858 AATTTAGATTA-GATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
21198886 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21198915 AATTTATGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21198943 AATTTAGGTTAGGTTTAGGGTTTTTACTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
21198972 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21199001 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21199029 AATTTAGGTTAGGTTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21199058 AATTTAGGTTA-GATTAAGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21199086 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21199114 AATTTAGGTTA-GCTTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
21199142 AATTTAGGTTAGGTTTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21199171 AATTTAGGTTA-GATTAGGGTTTGTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* **
21199199 AATTTAGGTTAGATTTAGGGTTTTTTGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
* *
21199228 AATTTAGGTTAGGTTTAGGGGTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21199257 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
** *
21199285 AATTTAGGTTA-AATTAGGGTTTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21199313 AATTTAGGTTAGGTTTAGTGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21199342 AATTTAGGTTA--TATTAGGATTTTTAATT
1 AATTTAGGTTAGGT-TTAGGGTTTTTAATT
*
21199370 AATTTAGGTTAGGTTTAGGG-TTTTAGTT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
**
21199398 AATTTAGGTTA-AATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21199426 AATTTAGGTTA-GATTAGGGTTTTTAATT
1 AATTTAGGTTAGGTTTAGGGTTTTTAATT
*
21199454 AATTTAGGTTAGGGTTAGG
1 AATTTAGGTTAGGTTTAGG
21199473 TTAGGGTTTT
Statistics
Matches: 4539, Mismatches: 406, Indels: 167
0.89 0.08 0.03
Matches are distributed among these distances:
25 65 0.01
27 21 0.00
28 2077 0.46
29 2374 0.52
30 2 0.00
ACGTcount: A:0.25, C:0.01, G:0.24, T:0.51
Consensus pattern (29 bp):
AATTTAGGTTAGGTTTAGGGTTTTTAATT
Found at i:21199724 original size:21 final size:21
Alignment explanation
Indices: 21199700--21199760 Score: 59
Period size: 24 Copynumber: 2.8 Consensus size: 21
21199690 CCGGCGGCGG
21199700 TTGTGCTTCCTCCGGTGGTGA
1 TTGTGCTTCCTCCGGTGGTGA
* *
21199721 TTGTGGTTCTTCCTCTGGTGGTGG
1 TTGT-G--CTTCCTCCGGTGGTGA
* *
21199745 TTGTGGTTCTTCCGGT
1 TTGTGCTTCCTCCGGT
21199761 TCGGCATCTG
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
21 12 0.38
22 1 0.03
23 1 0.03
24 18 0.56
ACGTcount: A:0.02, C:0.20, G:0.34, T:0.44
Consensus pattern (21 bp):
TTGTGCTTCCTCCGGTGGTGA
Found at i:21199735 original size:24 final size:24
Alignment explanation
Indices: 21199705--21199757 Score: 88
Period size: 24 Copynumber: 2.2 Consensus size: 24
21199695 GGCGGTTGTG
21199705 CTTCCTCCGGTGGTGATTGTGGTT
1 CTTCCTCCGGTGGTGATTGTGGTT
* *
21199729 CTTCCTCTGGTGGTGGTTGTGGTT
1 CTTCCTCCGGTGGTGATTGTGGTT
21199753 CTTCC
1 CTTCC
21199758 GGTTCGGCAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.02, C:0.23, G:0.32, T:0.43
Consensus pattern (24 bp):
CTTCCTCCGGTGGTGATTGTGGTT
Found at i:21200056 original size:18 final size:18
Alignment explanation
Indices: 21200012--21200057 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 18
21200002 TATTCGGAAA
* *
21200012 AGGATACATGTAAGGGTT
1 AGGATACATATAAGGGCT
*
21200030 AGGGTACATATAAGGGCT
1 AGGATACATATAAGGGCT
*
21200048 AGGAAACATA
1 AGGATACATA
21200058 CCGGGCATCA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.39, C:0.09, G:0.30, T:0.22
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:21200711 original size:7 final size:7
Alignment explanation
Indices: 21200701--21200732 Score: 64
Period size: 7 Copynumber: 4.6 Consensus size: 7
21200691 TTATATACAT
21200701 AATACTA
1 AATACTA
21200708 AATACTA
1 AATACTA
21200715 AATACTA
1 AATACTA
21200722 AATACTA
1 AATACTA
21200729 AATA
1 AATA
21200733 TCAATCGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:21201856 original size:29 final size:29
Alignment explanation
Indices: 21201814--21201875 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 29
21201804 GCCATTGATG
*
21201814 AAAATATAAAAAAAATTA-AAATTATTTTA
1 AAAAAATAAAAAAAATTATAAA-TATTTTA
*
21201843 AAAAAATATAAAAAATTATAAATATTTTA
1 AAAAAATAAAAAAAATTATAAATATTTTA
21201872 AAAA
1 AAAA
21201876 TGGATTTGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 27 0.90
30 3 0.10
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (29 bp):
AAAAAATAAAAAAAATTATAAATATTTTA
Found at i:21201913 original size:40 final size:40
Alignment explanation
Indices: 21201869--21201944 Score: 134
Period size: 40 Copynumber: 1.9 Consensus size: 40
21201859 TATAAATATT
21201869 TTAAAAATGGATTTGAGAGAATTTTGGAAGGAAATTAAAA
1 TTAAAAATGGATTTGAGAGAATTTTGGAAGGAAATTAAAA
* *
21201909 TTAAATATGGGTTTGAGAGAATTTTGGAAGGAAATT
1 TTAAAAATGGATTTGAGAGAATTTTGGAAGGAAATT
21201945 GAGAGAATTT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.42, C:0.00, G:0.25, T:0.33
Consensus pattern (40 bp):
TTAAAAATGGATTTGAGAGAATTTTGGAAGGAAATTAAAA
Found at i:21201946 original size:22 final size:22
Alignment explanation
Indices: 21201921--21201971 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
21201911 AAATATGGGT
21201921 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
21201943 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
21201965 TTGAGAG
1 TTGAGAG
21201972 GATTAGAGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.39, C:0.00, G:0.33, T:0.27
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:21203227 original size:26 final size:26
Alignment explanation
Indices: 21203191--21203240 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
21203181 CTACGCGAAG
21203191 GGGTCAAGGGG-AGAAGACCCTTGCGT
1 GGGTCAAGGGGCAG-AGACCCTTGCGT
*
21203217 GGGTCAAGGGGCAGAGACCTTTGC
1 GGGTCAAGGGGCAGAGACCCTTGC
21203241 AATGGTGACC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.22, C:0.20, G:0.42, T:0.16
Consensus pattern (26 bp):
GGGTCAAGGGGCAGAGACCCTTGCGT
Found at i:21204148 original size:17 final size:17
Alignment explanation
Indices: 21204118--21204162 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
21204108 TTGTGAATCG
* *
21204118 TGTCCGCCAAGCGATAT
1 TGTCCACCAAGCGATAC
*
21204135 TGTCCACCAGGCGATAC
1 TGTCCACCAAGCGATAC
*
21204152 TGTCCTCCAAG
1 TGTCCACCAAG
21204163 AAATATTGTC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.22, C:0.33, G:0.22, T:0.22
Consensus pattern (17 bp):
TGTCCACCAAGCGATAC
Found at i:21206024 original size:25 final size:25
Alignment explanation
Indices: 21205996--21206113 Score: 132
Period size: 25 Copynumber: 4.8 Consensus size: 25
21205986 CTCTCAAGCA
21205996 ATAAATCGGTATGCTCTCAGGAGCT
1 ATAAATCGGTATGCTCTCAGGAGCT
**
21206021 ATAAATCGAAATGCTCTCAGGAGCT
1 ATAAATCGGTATGCTCTCAGGAGCT
* * * *
21206046 ATAAATTGGTAAGCCCAT-ACGAGCT
1 ATAAATCGGTATGCTC-TCAGGAGCT
* *
21206071 ATGAATCGGTATGCTC-CATGAGCT
1 ATAAATCGGTATGCTCTCAGGAGCT
*
21206095 ATAAATCAGTATGCTCTCA
1 ATAAATCGGTATGCTCTCA
21206114 CGACCGGTGG
Statistics
Matches: 75, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
24 20 0.27
25 54 0.72
26 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.27
Consensus pattern (25 bp):
ATAAATCGGTATGCTCTCAGGAGCT
Found at i:21213758 original size:25 final size:25
Alignment explanation
Indices: 21213717--21213931 Score: 175
Period size: 25 Copynumber: 8.6 Consensus size: 25
21213707 TCCTCTACAT
* * *
21213717 GTATGCTCACACGAGCTGTGAATCG
1 GTATGCTCTCTCGAGCTGTAAATCG
* *
21213742 ATATGCTCTCTCAAGCTGTAAATCG
1 GTATGCTCTCTCGAGCTGTAAATCG
*
21213767 GTATGCTCT-TACAAGCTGTAAATCG
1 GTATGCTCTCT-CGAGCTGTAAATCG
* * *
21213792 GTAAGCTCATAT-GAGCTGTGAATCG
1 GTATGCTC-TCTCGAGCTGTAAATCG
** * *
21213817 ACATGCCCTCTCGAGTTGTAAATCG
1 GTATGCTCTCTCGAGCTGTAAATCG
21213842 GTATGCTCTCTCGAGCTGTAAATCG
1 GTATGCTCTCTCGAGCTGTAAATCG
* * * * * *
21213867 GTAAGCTCAT-ACGAGTTTTGAATTG
1 GTATGCTC-TCTCGAGCTGTAAATCG
* *
21213892 GTATGCTCTCACGAGCTATAAATCG
1 GTATGCTCTCTCGAGCTGTAAATCG
* *
21213917 ATATGCTCTCACGAG
1 GTATGCTCTCTCGAG
21213932 TGGTGGAGTG
Statistics
Matches: 152, Mismatches: 32, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
24 4 0.03
25 145 0.95
26 2 0.01
27 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (25 bp):
GTATGCTCTCTCGAGCTGTAAATCG
Found at i:21213771 original size:50 final size:50
Alignment explanation
Indices: 21213717--21213931 Score: 200
Period size: 50 Copynumber: 4.3 Consensus size: 50
21213707 TCCTCTACAT
* * * *
21213717 GTATGCTCACACGAGCTGTGAATCGATATGCTCTCTCAAGCTGTAAATCG
1 GTATGCTCTCACGAGCTGTAAATCGGTATGCTCTCTCGAGCTGTAAATCG
* * * * *
21213767 GTATGCTCTTACAAGCTGTAAATCGGTAAGCTCATAT-GAGCTGTGAATCG
1 GTATGCTCTCACGAGCTGTAAATCGGTATGCTC-TCTCGAGCTGTAAATCG
** * * *
21213817 ACATGCCCTCTCGAGTTGTAAATCGGTATGCTCTCTCGAGCTGTAAATCG
1 GTATGCTCTCACGAGCTGTAAATCGGTATGCTCTCTCGAGCTGTAAATCG
* * * * * * *
21213867 GTAAGCTCAT-ACGAGTTTTGAATTGGTATGCTCTCACGAGCTATAAATCG
1 GTATGCTC-TCACGAGCTGTAAATCGGTATGCTCTCTCGAGCTGTAAATCG
*
21213917 ATATGCTCTCACGAG
1 GTATGCTCTCACGAG
21213932 TGGTGGAGTG
Statistics
Matches: 130, Mismatches: 31, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
49 3 0.02
50 124 0.95
51 3 0.02
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (50 bp):
GTATGCTCTCACGAGCTGTAAATCGGTATGCTCTCTCGAGCTGTAAATCG
Found at i:21213889 original size:75 final size:75
Alignment explanation
Indices: 21213721--21213931 Score: 271
Period size: 75 Copynumber: 2.8 Consensus size: 75
21213711 CTACATGTAT
* * *
21213721 GCTCACACGAGCTGTGAATCGATATGCTCTCTCAAGCTGTAAATCGGTATGCTCT-TACAAGCTG
1 GCTCATACGAGCTGTGAATCGATATGCTCTCTCGAGCTGTAAATCGGTATGCTCTCT-CGAGCTG
21213785 TAAATCGGTAA
65 TAAATCGGTAA
* * * *
21213796 GCTCATATGAGCTGTGAATCGACATGCCCTCTCGAGTTGTAAATCGGTATGCTCTCTCGAGCTGT
1 GCTCATACGAGCTGTGAATCGATATGCTCTCTCGAGCTGTAAATCGGTATGCTCTCTCGAGCTGT
21213861 AAATCGGTAA
66 AAATCGGTAA
* * * * * * * *
21213871 GCTCATACGAGTTTTGAATTGGTATGCTCTCACGAGCTATAAATCGATATGCTCTCACGAG
1 GCTCATACGAGCTGTGAATCGATATGCTCTCTCGAGCTGTAAATCGGTATGCTCTCTCGAG
21213932 TGGTGGAGTG
Statistics
Matches: 116, Mismatches: 19, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
75 115 0.99
76 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.29
Consensus pattern (75 bp):
GCTCATACGAGCTGTGAATCGATATGCTCTCTCGAGCTGTAAATCGGTATGCTCTCTCGAGCTGT
AAATCGGTAA
Found at i:21223676 original size:31 final size:31
Alignment explanation
Indices: 21223597--21223680 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 31
21223587 ATTCAATGAT
* *
21223597 CAAAT-AAATTCGGCAATATATATCCTTATA
1 CAAATCAAATTCAGCAATGTATATCCTTATA
* *
21223627 CGAATCAAATT-TGACAATGTATAT-CTATATA
1 CAAATCAAATTCAG-CAATGTATATCCT-TATA
21223658 CAAATCAAATTCAGCAATGTATA
1 CAAATCAAATTCAGCAATGTATA
21223681 AAACATATAA
Statistics
Matches: 45, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
30 7 0.16
31 37 0.82
32 1 0.02
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.32
Consensus pattern (31 bp):
CAAATCAAATTCAGCAATGTATATCCTTATA
Found at i:21232359 original size:50 final size:50
Alignment explanation
Indices: 21232233--21232479 Score: 237
Period size: 50 Copynumber: 4.8 Consensus size: 50
21232223 ATTTGGGTAA
* *
21232233 AGAGATCCCATGTAAGACCACGTCTGGGACATGGCATTGGCATCCTTGAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGA-C--G
* * *
21232289 AAAGGTCTCATGTAATACCATGTCTGGGACATGGCATTGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
* * *
21232339 AGAGGTCCCAAGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
** * * * * *
21232389 AGAGGTCCCCCGTAAGACCATATCTGGGATATGGCATTCGCA--GTACATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGACG
* ** * *
21232438 AAACATCCTATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
21232480 TGTTATTATC
Statistics
Matches: 162, Mismatches: 28, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
48 1 0.01
49 36 0.22
50 81 0.50
52 1 0.01
53 4 0.02
55 2 0.01
56 37 0.23
ACGTcount: A:0.27, C:0.23, G:0.28, T:0.22
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
Found at i:21282084 original size:17 final size:19
Alignment explanation
Indices: 21282059--21282093 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
21282049 TATATTAAAT
21282059 AAATATATTAT-ATATTTA
1 AAATATATTATAATATTTA
21282077 AAAT-TATTATAATATTT
1 AAATATATTATAATATTT
21282094 TAATTAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
AAATATATTATAATATTTA
Found at i:21283183 original size:197 final size:197
Alignment explanation
Indices: 21282823--21283211 Score: 620
Period size: 197 Copynumber: 2.0 Consensus size: 197
21282813 TATTGAGTTG
* * *
21282823 ATGGAAACCTTGTTGTGTAACACCCCTAACCCGTACCCATCGTCGAAATAGGGTTACAGAGCATC
1 ATGGAAACCTTGCTATGTAACACCCCTAACCCGTACCCATCGCCGAAATAGGGTTACAGAGCATC
*
21282888 ACCACAAAAACGTAACTCAAATCATTCATGTCCAACATTTCATAATAATTCAAAATCTAATCAAA
66 ACCACAAAAACATAACTCAAATCATTCATGTCCAACATTTCATAATAATTCAAAATCTAATCAAA
21282953 CACATCATATCATCCCTTATTTGAGCCCTCGAGGCCTTAGAGACAATTTAGAAACGATTCGGTTA
131 CACATCATATCATCCCTTATTTGAGCCCTCGAGGCCTTAGAGACAATTTAGAAACGATTCGGTTA
21283018 CA
196 CA
* * * * *
21283020 ATGGAAGCCTTGCTATGTAACATCCTTAACCCGTACCCGTCGCCG-AATAGGTTTACAGAGCATC
1 ATGGAAACCTTGCTATGTAACACCCCTAACCCGTACCCATCGCCGAAATAGGGTTACAGAGCATC
* * *
21283084 ACCGCAAAAACATAACTCAAATCATTCATGTCTAACATTTTATAATAATTCCAAAATCTAATCAA
66 ACCACAAAAACATAACTCAAATCATTCATGTCCAACATTTCATAATAATT-CAAAATCTAATCAA
* *
21283149 ACACATGCATATCGTCCC-TATTTGAGCCCTCGAGGCCTTAGAGACACTTTAGAAACGATTCGG
130 ACACAT-CATATCATCCCTTATTTGAGCCCTCGAGGCCTTAGAGACAATTTAGAAACGATTCGG
21283212 GACTAAATCG
Statistics
Matches: 176, Mismatches: 14, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
196 64 0.36
197 102 0.58
198 10 0.06
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.26
Consensus pattern (197 bp):
ATGGAAACCTTGCTATGTAACACCCCTAACCCGTACCCATCGCCGAAATAGGGTTACAGAGCATC
ACCACAAAAACATAACTCAAATCATTCATGTCCAACATTTCATAATAATTCAAAATCTAATCAAA
CACATCATATCATCCCTTATTTGAGCCCTCGAGGCCTTAGAGACAATTTAGAAACGATTCGGTTA
CA
Found at i:21289785 original size:27 final size:27
Alignment explanation
Indices: 21289754--21289931 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
21289744 TAAATTGTAC
21289754 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
21289781 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21289807 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
21289835 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
21289863 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
21289890 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
21289917 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
21289932 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:21289868 original size:82 final size:81
Alignment explanation
Indices: 21289755--21289910 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
21289745 AAATTGTACA
* *
21289755 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
21289819 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
21289836 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
21289901 TGCGAGTTGA
65 TGCGAATTGA
21289911 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:21289922 original size:82 final size:81
Alignment explanation
Indices: 21289751--21289931 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
21289741 GATTAAATTG
* *
21289751 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
21289816 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
21289832 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
21289896 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
21289914 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
21289932 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:21297274 original size:12 final size:12
Alignment explanation
Indices: 21297259--21297301 Score: 52
Period size: 12 Copynumber: 3.6 Consensus size: 12
21297249 AGGGATATTT
21297259 GGAGAGATTTGA
1 GGAGAGATTTGA
* *
21297271 GGAGGGATATT-T
1 GGAGAGAT-TTGA
21297283 GGAGAGATTTGA
1 GGAGAGATTTGA
21297295 GGAGAGA
1 GGAGAGA
21297302 ATATTGGGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
11 2 0.08
12 21 0.84
13 2 0.08
ACGTcount: A:0.33, C:0.00, G:0.44, T:0.23
Consensus pattern (12 bp):
GGAGAGATTTGA
Found at i:21297308 original size:24 final size:24
Alignment explanation
Indices: 21297243--21297298 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
21297233 ATAGATAGAA
21297243 TTGAGGAGGGATATTTGGAGAGAT
1 TTGAGGAGGGATATTTGGAGAGAT
21297267 TTGAGGAGGGATATTTGGAGAGAT
1 TTGAGGAGGGATATTTGGAGAGAT
21297291 TTGAGGAG
1 TTGAGGAG
21297299 AGAATATTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.29, C:0.00, G:0.43, T:0.29
Consensus pattern (24 bp):
TTGAGGAGGGATATTTGGAGAGAT
Found at i:21298438 original size:17 final size:18
Alignment explanation
Indices: 21298416--21298455 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
21298406 AAAATGACCT
* *
21298416 AAATA-CCCTATAGGGTA
1 AAATACCCCCATAGGATA
21298433 AAATACCCCCATAGGATA
1 AAATACCCCCATAGGATA
21298451 AAATA
1 AAATA
21298456 ACTGAAATAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.47, C:0.20, G:0.12, T:0.20
Consensus pattern (18 bp):
AAATACCCCCATAGGATA
Found at i:21298505 original size:27 final size:27
Alignment explanation
Indices: 21298433--21298861 Score: 426
Period size: 27 Copynumber: 16.0 Consensus size: 27
21298423 CTATAGGGTA
* *
21298433 AAATACCCCCATAGGATAAAATAACTG
1 AAATACCCCCATAGGGTAAAATGACTG
*** * * *
21298460 AAATACCCATGTA-AG-AAAATAACTA
1 AAATACCCCCATAGGGTAAAATGACTG
*
21298485 AAATACCCCCATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACTG
* * *
21298512 AAATACCCCTATAGGGTAGAATGA-TC
1 AAATACCCCCATAGGGTAAAATGACTG
* * *
21298538 AAA-ACACCGTCATAGGGTAGAATGA-TCA
1 AAATAC-CC-CCATAGGGTAAAATGACT-G
* *
21298566 AAATACCCCCATAGGGGAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACTG
* *
21298593 AAATACCCCTATAGGGTAAAATGACCG
1 AAATACCCCCATAGGGTAAAATGACTG
* *
21298620 AAATACCCCCTTAGGGTAAAATGA-TC
1 AAATACCCCCATAGGGTAAAATGACTG
*
21298646 AAATACCTCCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
* * * *
21298673 AAATACCTCCATAGGGTAGAATTA-TCA
1 AAATACCCCCATAGGGTAAAATGACT-G
* *
21298700 AAATACCCCCATAAGGTAAAATGACTA
1 AAATACCCCCATAGGGTAAAATGACTG
* *
21298727 AAATACCCTCATAGGGTAGAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
21298754 AAATACCCCCATAGGGTAAAATGA-TCG
1 AAATACCCCCATAGGGTAAAATGACT-G
* *
21298781 AAATACCCCCATAGGGTAGAATGA-TCA
1 AAATACCCCCATAGGGTAAAATGACT-G
* *
21298808 AAATACCCTCATAGGGTAAAATGATTG
1 AAATACCCCCATAGGGTAAAATGACTG
*
21298835 AAATACCCTCATAGGGTAAAATGACTG
1 AAATACCCCCATAGGGTAAAATGACTG
21298862 TTATGGCCTT
Statistics
Matches: 337, Mismatches: 53, Indels: 24
0.81 0.13 0.06
Matches are distributed among these distances:
25 21 0.06
26 30 0.09
27 277 0.82
28 7 0.02
29 2 0.01
ACGTcount: A:0.42, C:0.21, G:0.17, T:0.20
Consensus pattern (27 bp):
AAATACCCCCATAGGGTAAAATGACTG
Found at i:21298579 original size:81 final size:81
Alignment explanation
Indices: 21298484--21298858 Score: 497
Period size: 81 Copynumber: 4.6 Consensus size: 81
21298474 GAAAATAACT
* * * **
21298484 AAAATACCCCCATAGGGTAAAATGACCGAAATACCCCTATAGGGTAGAATGATCAAAACACCGTC
1 AAAATACCCCCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGATCAAAATACCCCC
*
21298549 ATAGGGTAGAATGATC
66 ATAGGGTAAAATGATC
* * * *
21298565 AAAATACCCCCATAGGGGAAAATGACCGAAATACCCCTATAGGGTAAAATGACCGAAATACCCCC
1 AAAATACCCCCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGATCAAAATACCCCC
*
21298630 TTAGGGTAAAATGATC
66 ATAGGGTAAAATGATC
* * *
21298646 -AAATACCTCCATAGGGTAAAATGACTGAAATACCTCC-ATAGGGTAGAATTATCAAAATACCCC
1 AAAATACCCCCATAGGGTAAAATGACTGAAATACC-CCTATAGGGTAAAATGATCAAAATACCCC
*
21298709 CATAAGGTAAAATGA-C
65 CATAGGGTAAAATGATC
* * * *
21298725 TAAAATACCCTCATAGGGTAGAATGACTGAAATACCCCCATAGGGTAAAATGATCGAAATACCCC
1 -AAAATACCCCCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGATCAAAATACCCC
*
21298790 CATAGGGTAGAATGATC
65 CATAGGGTAAAATGATC
* *
21298807 AAAATACCCTCATAGGGTAAAATGATTGAAATA-CCCTCATAGGGTAAAATGA
1 AAAATACCCCCATAGGGTAAAATGACTGAAATACCCCT-ATAGGGTAAAATGA
21298859 CTGTTATGGC
Statistics
Matches: 259, Mismatches: 29, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
79 1 0.00
80 71 0.27
81 186 0.72
82 1 0.00
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.20
Consensus pattern (81 bp):
AAAATACCCCCATAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGATCAAAATACCCCC
ATAGGGTAAAATGATC
Found at i:21303187 original size:16 final size:16
Alignment explanation
Indices: 21303157--21303186 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
21303147 TAGAATAATG
21303157 TTTATCAAATCAAAAT
1 TTTATCAAATCAAAAT
21303173 TTTA-CAAATCAAAA
1 TTTATCAAATCAAAA
21303187 AAATGAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (16 bp):
TTTATCAAATCAAAAT
Found at i:21304390 original size:16 final size:16
Alignment explanation
Indices: 21304343--21304383 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
21304333 TCTAACTTCA
*
21304343 TCTAAACACTTA-CTCT
1 TCTAAACCCTTATC-CT
21304359 TCTAAACCCTTATCCT
1 TCTAAACCCTTATCCT
21304375 TC-AAACCCT
1 TCTAAACCCT
21304384 CTTTCCTCCT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
15 7 0.30
16 15 0.65
17 1 0.04
ACGTcount: A:0.29, C:0.37, G:0.00, T:0.34
Consensus pattern (16 bp):
TCTAAACCCTTATCCT
Found at i:21306588 original size:21 final size:21
Alignment explanation
Indices: 21306541--21306590 Score: 55
Period size: 21 Copynumber: 2.4 Consensus size: 21
21306531 AAACAATAAT
* *
21306541 AATAAAAAATAAAAGAAAACA
1 AATAAAAAAGAAAAGAAAAAA
** *
21306562 TTTAAAAGAGAAAAGAAAAAA
1 AATAAAAAAGAAAAGAAAAAA
21306583 AATAAAAA
1 AATAAAAA
21306591 CAGAGAAGTA
Statistics
Matches: 21, Mismatches: 8, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.78, C:0.02, G:0.08, T:0.12
Consensus pattern (21 bp):
AATAAAAAAGAAAAGAAAAAA
Found at i:21309330 original size:11 final size:11
Alignment explanation
Indices: 21309286--21309334 Score: 53
Period size: 11 Copynumber: 4.4 Consensus size: 11
21309276 TAATTAGATA
*
21309286 ATTATTATTTA
1 ATTATTATTTT
21309297 ATTATTATTTT
1 ATTATTATTTT
**
21309308 ATTAAGATTTTT
1 ATTATTA-TTTT
*
21309320 AGTATTATTTT
1 ATTATTATTTT
21309331 ATTA
1 ATTA
21309335 ATAAATGATT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
11 22 0.73
12 8 0.27
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (11 bp):
ATTATTATTTT
Found at i:21309783 original size:24 final size:24
Alignment explanation
Indices: 21309743--21309789 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
21309733 AAAGGGAAAT
*
21309743 AAGAGAAAGTGATGGAAAATGTTG
1 AAGAGAAAGTGAAGGAAAATGTTG
*
21309767 AAGAGAAAG-GAAAGGAAAGTGTT
1 AAGAGAAAGTG-AAGGAAAATGTT
21309790 ATAAATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.49, C:0.00, G:0.34, T:0.17
Consensus pattern (24 bp):
AAGAGAAAGTGAAGGAAAATGTTG
Found at i:21312018 original size:51 final size:52
Alignment explanation
Indices: 21311878--21312018 Score: 198
Period size: 51 Copynumber: 2.8 Consensus size: 52
21311868 AAGTGAAAGC
* *
21311878 GATGATCACGTGTGTAGTACTATGTGTAGGCTACTATGCATACCGGATAGCT
1 GATGATCACGTGTGTAGTACTATGTGCAGGCTACTATGTATACCGGATAGCT
* *
21311930 --TCGATCACGTGTGTAGTACTATGTGCACGCTACTATGTATATCGGATAG-T
1 GAT-GATCACGTGTGTAGTACTATGTGCAGGCTACTATGTATACCGGATAGCT
* *
21311980 GATGGTCACATGTGTAGTACTATGTGCAGGCTACTATGT
1 GATGATCACGTGTGTAGTACTATGTGCAGGCTACTATGT
21312019 GAACTGGTAT
Statistics
Matches: 79, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
50 2 0.03
51 76 0.96
52 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (52 bp):
GATGATCACGTGTGTAGTACTATGTGCAGGCTACTATGTATACCGGATAGCT
Found at i:21312216 original size:102 final size:102
Alignment explanation
Indices: 21312040--21312270 Score: 401
Period size: 102 Copynumber: 2.3 Consensus size: 102
21312030 TTTGAATATA
*
21312040 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGTTGATTCCCCGATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
* *
21312105 GGTTGCTAAGTGCTGATTCCACCATAT-TTCAAATGTG
66 GGTTGCTAAGTGCAGATCCCACCATATCTT-AAATGTG
21312142 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
1 AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
*
21312207 GGTTGCTAAGTGCAGATCCCACCGTATCTTAAATGTG
66 GGTTGCTAAGTGCAGATCCCACCATATCTTAAATGTG
*
21312244 AAAGGGGTTGCTAAGTGCTGATTCCCC
1 AAGGGGGTTGCTAAGTGCTGATTCCCC
21312271 GATTCATTGG
Statistics
Matches: 123, Mismatches: 5, Indels: 2
0.95 0.04 0.02
Matches are distributed among these distances:
102 121 0.98
103 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.28, T:0.30
Consensus pattern (102 bp):
AAGGGGGTTGCTAAGTGCTGATTCCCCCAAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGT
GGTTGCTAAGTGCAGATCCCACCATATCTTAAATGTG
Found at i:21312293 original size:75 final size:76
Alignment explanation
Indices: 21312170--21312370 Score: 343
Period size: 75 Copynumber: 2.7 Consensus size: 76
21312160 TGATTCCCCC
21312170 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCAGATCCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCAGATCCCACCGTATC
21312235 -TTAAATGTGA
66 ATTAAATGTGA
* *
21312245 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGGAGATTCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCAGATCCCACCGTATC
*
21312310 ATTGAATGTGA
66 ATTAAATGTGA
*
21312321 AAGGGGTTGCTAAGTGCTGATTCCCCG-TATCACTGGTGGTTGCTAAGTGC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAT-TCATTGGTGGTTGCTAAGTGC
21312371 TGAATCCACC
Statistics
Matches: 119, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
75 64 0.54
76 55 0.46
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (76 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCAGATCCCACCGTATC
ATTAAATGTGA
Found at i:21312379 original size:76 final size:75
Alignment explanation
Indices: 21312170--21312381 Score: 338
Period size: 76 Copynumber: 2.8 Consensus size: 75
21312160 TGATTCCCCC
21312170 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCAG-ATCCCACCGTAT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCAGAAT-CCACCGTAT
21312234 CTTAAATGTGA
65 CTTAAATGTGA
* *
21312245 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGGAGATTCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCAGAATCCACCGTATC
*
21312310 ATTGAATGTGA
66 -TTAAATGTGA
* *
21312321 AAGGGGTTGCTAAGTGCTGATTCCCCG-TATCACTGGTGGTTGCTAAGTGCTGAATCCACCG
1 AAGGGGTTGCTAAGTGCTGATTCCCCGAT-TCATTGGTGGTTGCTAAGTGCAGAATCCACCG
21312382 ATAACGGATA
Statistics
Matches: 127, Mismatches: 7, Indels: 5
0.91 0.05 0.04
Matches are distributed among these distances:
75 62 0.49
76 65 0.51
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (75 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTTGCTAAGTGCAGAATCCACCGTATC
TTAAATGTGA
Found at i:21315313 original size:24 final size:24
Alignment explanation
Indices: 21315273--21315319 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
21315263 AAAGGAAAAT
*
21315273 AAGAGAAAGTGATGGAAAATGTTG
1 AAGAGAAAGTGAAGGAAAATGTTG
*
21315297 AAGAGAAAG-GAAAGGAAAGTGTT
1 AAGAGAAAGTG-AAGGAAAATGTT
21315320 ATAAATTTAG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.49, C:0.00, G:0.34, T:0.17
Consensus pattern (24 bp):
AAGAGAAAGTGAAGGAAAATGTTG
Found at i:21322720 original size:50 final size:50
Alignment explanation
Indices: 21322550--21322791 Score: 157
Period size: 50 Copynumber: 4.7 Consensus size: 50
21322540 GGTAAAGAGA
* * **
21322550 TCCCATGTAAGACCATGTTTGGGACATGGCATTGGCATCATTGAGATTATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C----CGA-TATGAGAAC
* * * * * **
21322606 TCCCATGTAAGACCATTTCTGGGACATGGCGTTGGCATCGAGATAAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
**** * *
21322656 TCCCCCACATGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
* * * * *
21322706 TCCCATGTAAGACCATATCTGGGATATGACATTGGCA--G-TACAGAAAAC
1 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATA-TGAGAAC
* * * *
21322754 ATCTCATGTAAGACTATGTCTGGGACATAGCTTTGGCA
1 -TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
21322792 TGTATTATCA
Statistics
Matches: 146, Mismatches: 38, Indels: 11
0.75 0.19 0.06
Matches are distributed among these distances:
47 2 0.01
48 6 0.04
49 30 0.21
50 72 0.49
51 2 0.01
56 34 0.23
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGATATGAGAAC
Found at i:21323008 original size:12 final size:12
Alignment explanation
Indices: 21322991--21323029 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
21322981 ATGAGTTATT
21322991 TAAGTAAGCAAG
1 TAAGTAAGCAAG
*
21323003 TAAGTAAACAAG
1 TAAGTAAGCAAG
* *
21323015 TAAGTGAGTAAG
1 TAAGTAAGCAAG
21323027 TAA
1 TAA
21323030 AGAAGCGAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.05, G:0.23, T:0.21
Consensus pattern (12 bp):
TAAGTAAGCAAG
Found at i:21330090 original size:21 final size:21
Alignment explanation
Indices: 21330041--21330090 Score: 50
Period size: 20 Copynumber: 2.4 Consensus size: 21
21330031 AAACTATATT
*
21330041 TTTGGTATTCATTATTTTGGGA
1 TTTGGT-TTAATTATTTTGGGA
*
21330063 TGT-GTTTAATTACTTTT-GGA
1 TTTGGTTTAATTA-TTTTGGGA
21330083 TTTGGTTT
1 TTTGGTTT
21330091 TAGATTTGGA
Statistics
Matches: 23, Mismatches: 3, Indels: 5
0.74 0.10 0.16
Matches are distributed among these distances:
20 11 0.48
21 10 0.43
22 2 0.09
ACGTcount: A:0.16, C:0.04, G:0.22, T:0.58
Consensus pattern (21 bp):
TTTGGTTTAATTATTTTGGGA
Found at i:21332040 original size:41 final size:40
Alignment explanation
Indices: 21331959--21332126 Score: 194
Period size: 41 Copynumber: 4.1 Consensus size: 40
21331949 AGAGTACCGT
* * *
21331959 TGAATTGCACAAACGTGCCTCT-TTTGTACTTCGGTACCCC
1 TGAATTGCACATACATGCC-CTGTTTGTACTTCAGTACCCC
*
21331999 TGAATTGCACATACATGCTCCTGTTTGTACTTCAGTGCCCC
1 TGAATTGCACATACATGC-CCTGTTTGTACTTCAGTACCCC
* * *
21332040 TGAATTGCTCATTCATGCCCCTGTTTGTACTTCAGTGCCCC
1 TGAATTGCACATACATG-CCCTGTTTGTACTTCAGTACCCC
* * **
21332081 TGAATTGCACATACGTGCCCTTCTTTGTACTTTGGTACCCC
1 TGAATTGCACATACATGCCC-TGTTTGTACTTCAGTACCCC
21332122 TGAAT
1 TGAAT
21332127 GAAGTTTTGT
Statistics
Matches: 111, Mismatches: 13, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
40 21 0.19
41 89 0.80
42 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.17, T:0.35
Consensus pattern (40 bp):
TGAATTGCACATACATGCCCTGTTTGTACTTCAGTACCCC
Found at i:21332058 original size:21 final size:22
Alignment explanation
Indices: 21331985--21332088 Score: 80
Period size: 20 Copynumber: 5.0 Consensus size: 22
21331975 GCCTCTTTTG
* *
21331985 TACTTCGGTACCCCTGAATTGC
1 TACTTCAGTGCCCCTGAATTGC
* * *
21332007 -ACATACA-TGCTCCTG-TTTG-
1 TAC-TTCAGTGCCCCTGAATTGC
21332026 TACTTCAGTGCCCCTGAATTGC
1 TACTTCAGTGCCCCTGAATTGC
*
21332048 T-CATTCA-TGCCCCTG-TTTG-
1 TAC-TTCAGTGCCCCTGAATTGC
21332067 TACTTCAGTGCCCCTGAATTGC
1 TACTTCAGTGCCCCTGAATTGC
21332089 ACATACGTGC
Statistics
Matches: 62, Mismatches: 10, Indels: 20
0.67 0.11 0.22
Matches are distributed among these distances:
19 8 0.13
20 24 0.39
21 23 0.37
22 7 0.11
ACGTcount: A:0.17, C:0.31, G:0.17, T:0.35
Consensus pattern (22 bp):
TACTTCAGTGCCCCTGAATTGC
Found at i:21332100 original size:21 final size:21
Alignment explanation
Indices: 21331995--21332100 Score: 76
Period size: 21 Copynumber: 5.1 Consensus size: 21
21331985 TACTTCGGTA
* *
21331995 CCCCTGAATTGCACATACATG
1 CCCCTGAATTGCACATTCGTG
* * *
21332016 CTCCTG-TTTGTAC-TTCAGTG
1 CCCCTGAATTGCACATTC-GTG
* *
21332036 CCCCTGAATTGCTCATTCATG
1 CCCCTGAATTGCACATTCGTG
* *
21332057 CCCCTG-TTTGTAC-TTCAGTG
1 CCCCTGAATTGCACATTC-GTG
*
21332077 CCCCTGAATTGCACATACGTG
1 CCCCTGAATTGCACATTCGTG
21332098 CCC
1 CCC
21332101 TTCTTTGTAC
Statistics
Matches: 62, Mismatches: 17, Indels: 12
0.68 0.19 0.13
Matches are distributed among these distances:
19 5 0.08
20 24 0.39
21 28 0.45
22 5 0.08
ACGTcount: A:0.18, C:0.33, G:0.17, T:0.32
Consensus pattern (21 bp):
CCCCTGAATTGCACATTCGTG
Found at i:21338692 original size:49 final size:50
Alignment explanation
Indices: 21338639--21338784 Score: 181
Period size: 49 Copynumber: 2.9 Consensus size: 50
21338629 TCGGAGGAAG
* *
21338639 TATCTGGCAGTATATCTGCATTATCTAGTGGCTTGACTACAATATTC-GT
1 TATCTGGCAGTATATCTGCATTATCTGGTGGCTTGACCACAATATTCTGT
*
21338688 TATCTGGCAGTATATCTGCAAATTATCTGGTGGCTCGACCACAATATTCTGT
1 TATCTGGCAGTATATCTGC--ATTATCTGGTGGCTTGACCACAATATTCTGT
* * * *
21338740 T-TCTGGCAGCTAGA-CTGCACTATCTGGTGGCTTGTCCACATTATT
1 TATCTGGCAG-TATATCTGCATTATCTGGTGGCTTGACCACAATATT
21338785 GGTGTTATTG
Statistics
Matches: 85, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
49 42 0.49
51 37 0.44
52 6 0.07
ACGTcount: A:0.23, C:0.21, G:0.20, T:0.36
Consensus pattern (50 bp):
TATCTGGCAGTATATCTGCATTATCTGGTGGCTTGACCACAATATTCTGT
Found at i:21338734 original size:51 final size:50
Alignment explanation
Indices: 21338639--21338771 Score: 164
Period size: 51 Copynumber: 2.7 Consensus size: 50
21338629 TCGGAGGAAG
* *
21338639 TATCTGGCAGTATATCTGCATTATCTAGTGGCTTGACTACAATATTC-GT
1 TATCTGGCAGTATATCTGCATTATCTAGTGGCTCGACCACAATATTCTGT
*
21338688 TATCTGGCAGTATATCTGCAAATTATCTGGTGGCTCGACCACAATATTCTGT
1 TATCTGGCAGTATATCTGC--ATTATCTAGTGGCTCGACCACAATATTCTGT
* * *
21338740 T-TCTGGCAGCTAGA-CTGCACTATCTGGTGGCT
1 TATCTGGCAG-TATATCTGCATTATCTAGTGGCT
21338772 TGTCCACATT
Statistics
Matches: 75, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
49 32 0.43
51 37 0.49
52 6 0.08
ACGTcount: A:0.23, C:0.21, G:0.21, T:0.35
Consensus pattern (50 bp):
TATCTGGCAGTATATCTGCATTATCTAGTGGCTCGACCACAATATTCTGT
Found at i:21350098 original size:40 final size:39
Alignment explanation
Indices: 21350007--21350269 Score: 287
Period size: 40 Copynumber: 6.6 Consensus size: 39
21349997 TCCTCGTTCA
* * * * *
21350007 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
21350046 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
21350085 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
21350125 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * * *
21350165 AAAGGCCTTCGGGGCTTAACCCGGAACTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCAC
** * * * *
21350205 AAATGCCTTC-GGATCTTAGTCCGGATATAGTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
21350246 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
21350270 CAGCATTCAA
Statistics
Matches: 196, Mismatches: 22, Indels: 11
0.86 0.10 0.05
Matches are distributed among these distances:
39 38 0.19
40 147 0.75
41 11 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:21352192 original size:45 final size:45
Alignment explanation
Indices: 21352126--21352215 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
21352116 TTTAAAACAT
*
21352126 GTAGTCCTTGATCACATATTCTGAGCTTCATCTCTATCAAATCTA
1 GTAGTCCTTGATCACACATTCTGAGCTTCATCTCTATCAAATCTA
*
21352171 GTAGTCCTTGATCACACATTCTTAGCTTCATCTCTATCAAATCTA
1 GTAGTCCTTGATCACACATTCTGAGCTTCATCTCTATCAAATCTA
21352216 TCTAGGTAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.27, C:0.26, G:0.10, T:0.38
Consensus pattern (45 bp):
GTAGTCCTTGATCACACATTCTGAGCTTCATCTCTATCAAATCTA
Found at i:21362548 original size:20 final size:22
Alignment explanation
Indices: 21362518--21362557 Score: 66
Period size: 20 Copynumber: 1.9 Consensus size: 22
21362508 TATACTTTGC
21362518 AACAGCATTTCCTG-TCTCTGA
1 AACAGCATTTCCTGTTCTCTGA
21362539 AACA-CATTTCCTGTTCTCT
1 AACAGCATTTCCTGTTCTCT
21362558 AACAATGGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.23, C:0.30, G:0.10, T:0.38
Consensus pattern (22 bp):
AACAGCATTTCCTGTTCTCTGA
Found at i:21364521 original size:20 final size:20
Alignment explanation
Indices: 21364493--21364556 Score: 53
Period size: 20 Copynumber: 3.2 Consensus size: 20
21364483 TAAGTGCATT
*
21364493 CAGGAGTACCGTAGTACAAA
1 CAGGGGTACCGTAGTACAAA
*
21364513 CAGGGGTA-CGTATGTGA-AAT
1 CAGGGGTACCGTA-GT-ACAAA
**
21364533 CAGGGGTACCAAAGTAC-AA
1 CAGGGGTACCGTAGTACAAA
21364552 CAGGG
1 CAGGG
21364557 ACACGTATGT
Statistics
Matches: 35, Mismatches: 5, Indels: 9
0.71 0.10 0.18
Matches are distributed among these distances:
19 11 0.31
20 21 0.60
21 3 0.09
ACGTcount: A:0.36, C:0.17, G:0.31, T:0.16
Consensus pattern (20 bp):
CAGGGGTACCGTAGTACAAA
Found at i:21364565 original size:39 final size:39
Alignment explanation
Indices: 21364473--21365109 Score: 623
Period size: 39 Copynumber: 16.2 Consensus size: 39
21364463 TGAATATAAT
* * * * * **
21364473 CAGGGGCATGTAAGTGCATTCAGGAGTACCGTAGTACAAA
1 CAGGGGCACGTATGTGCAATCAGGGGTATCAAAGTAC-AA
* * *
21364513 CAGGGGTACGTATGTGAAATCAGGGGTACCAAAGTACAA
1 CAGGGGCACGTATGTGCAATCAGGGGTATCAAAGTACAA
* * * *
21364552 CAGGGACACGTATGTGCAATTAGGAGTATGAAAGTACAAA
1 CAGGGGCACGTATGTGCAATCAGGGGTATCAAAGTAC-AA
* * * * *
21364592 CAGGGGCACGTACGTGCAATCAAGGGCACCGAAGTACAA
1 CAGGGGCACGTATGTGCAATCAGGGGTATCAAAGTACAA
* * * * *
21364631 TAGGGGCACATATGTGCAATCAGGGGTACCGAAGTAAGAA
1 CAGGGGCACGTATGTGCAATCAGGGGTATCAAAGT-ACAA
* *
21364671 CAAGGGCATGTATGTGCAATCAGGGGTATCAAAGTACAA
1 CAGGGGCACGTATGTGCAATCAGGGGTATCAAAGTACAA
* * * * * *
21364710 TAGGGGAATGTATGTGTAATTAGGGGTA-CTGAAGTACAA
1 CAGGGGCACGTATGTGCAATCAGGGGTATC-AAAGTACAA
* * *
21364749 CAGGGGCATGTTTGTGCAATCAGGGGTATCGAAGTACAA
1 CAGGGGCACGTATGTGCAATCAGGGGTATCAAAGTACAA
* *
21364788 CAAGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAA
1 CAGGGGCACGTATGTGCAATCAGGGGTATCAAAGTACAA
* * *
21364827 -TGGGGCCACGTATGTGTAATCACGGGTA-CTAAAGTACAAA
1 CAGGGG-CACGTATGTGCAATCAGGGGTATC-AAAGTAC-AA
* * * * *
21364867 TAGTGCCACATATGTGCAATCAAGGGTATCAAAGTACAAA
1 CAGGGGCACGTATGTGCAATCAGGGGTATCAAAGTAC-AA
*
21364907 CAGGGGCACGTATGTGCAATCAGGGGTACCAAAGTACAA
1 CAGGGGCACGTATGTGCAATCAGGGGTATCAAAGTACAA
* * *
21364946 TAGGGGCACGTATGTGCAATCAGGAGTATGAAAGTACAAA
1 CAGGGGCACGTATGTGCAATCAGGGGTATCAAAGTAC-AA
* * *
21364986 CAGGGGCACGTATGTACAATCAGGGGCATCGAAGTACAA
1 CAGGGGCACGTATGTGCAATCAGGGGTATCAAAGTACAA
* * * * *
21365025 CAGGGGCAGGTATGTGCAATCAAGGGTACCGAAGTAAGAA
1 CAGGGGCACGTATGTGCAATCAGGGGTATCAAAGT-ACAA
* * *
21365065 CAAGGGAATGTATGTGCAATCAGGGGTATCAAAGTACAA
1 CAGGGGCACGTATGTGCAATCAGGGGTATCAAAGTACAA
21365104 CAGGGG
1 CAGGGG
21365110 TACTGAAGTA
Statistics
Matches: 494, Mismatches: 92, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
38 5 0.01
39 267 0.54
40 219 0.44
41 3 0.01
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.19
Consensus pattern (39 bp):
CAGGGGCACGTATGTGCAATCAGGGGTATCAAAGTACAA
Found at i:21364613 original size:79 final size:78
Alignment explanation
Indices: 21364473--21365109 Score: 645
Period size: 79 Copynumber: 8.1 Consensus size: 78
21364463 TGAATATAAT
* * * * * * * *
21364473 CAGGGGCATGTAAGTGCATTCAGGAGTACCGTAGTACAAACAGGGGTACGTATGTGAAATCAGGG
1 CAGGGGCACGTATGTGCAATCAGGGGTA-TGAAGTACAAACAGGGGCACGTATGTGCAATCAGGG
21364538 GTACCAAAGTACAA
65 GTACCAAAGTACAA
* * * * *
21364552 CAGGGACACGTATGTGCAATTAGGAGTATGAAAGTACAAACAGGGGCACGTACGTGCAATCAAGG
1 CAGGGGCACGTATGTGCAATCAGGGGTATG-AAGTACAAACAGGGGCACGTATGTGCAATCAGGG
* *
21364617 GCACCGAAGTACAA
65 GTACCAAAGTACAA
* * * * *
21364631 TAGGGGCACATATGTGCAATCAGGGGTACCGAAGTA-AGAACAAGGGCATGTATGTGCAATCAGG
1 CAGGGGCACGTATGTGCAATCAGGGGTA-TGAAGTACA-AACAGGGGCACGTATGTGCAATCAGG
*
21364695 GGTATCAAAGTACAA
64 GGTACCAAAGTACAA
* * * * * * *
21364710 TAGGGGAATGTATGTGTAATTAGGGGTACTGAAGTAC-AACAGGGGCATGTTTGTGCAATCAGGG
1 CAGGGGCACGTATGTGCAATCAGGGGTA-TGAAGTACAAACAGGGGCACGTATGTGCAATCAGGG
* *
21364774 GTATCGAAGTACAA
65 GTACCAAAGTACAA
* * * *
21364788 CAAGGGCACGTATGTGCAATCAGGGGTATCGAAGTAC-AA-TGGGGCCACGTATGTGTAATCACG
1 CAGGGGCACGTATGTGCAATCAGGGGTAT-GAAGTACAAACAGGGG-CACGTATGTGCAATCAGG
*
21364851 GGTACTAAAGTACAAA
64 GGTACCAAAGTAC-AA
* * * * * *
21364867 TAGTGCCACATATGTGCAATCAAGGGTATCAAAGTACAAACAGGGGCACGTATGTGCAATCAGGG
1 CAGGGGCACGTATGTGCAATCAGGGGTAT-GAAGTACAAACAGGGGCACGTATGTGCAATCAGGG
21364932 GTACCAAAGTACAA
65 GTACCAAAGTACAA
* * *
21364946 TAGGGGCACGTATGTGCAATCAGGAGTATGAAAGTACAAACAGGGGCACGTATGTACAATCAGGG
1 CAGGGGCACGTATGTGCAATCAGGGGTATG-AAGTACAAACAGGGGCACGTATGTGCAATCAGGG
* * *
21365011 GCATCGAAGTACAA
65 GTACCAAAGTACAA
* * * * * *
21365025 CAGGGGCAGGTATGTGCAATCAAGGGTACCGAAGTA-AGAACAAGGGAATGTATGTGCAATCAGG
1 CAGGGGCACGTATGTGCAATCAGGGGTA-TGAAGTACA-AACAGGGGCACGTATGTGCAATCAGG
*
21365089 GGTATCAAAGTACAA
64 GGTACCAAAGTACAA
21365104 CAGGGG
1 CAGGGG
21365110 TACTGAAGTA
Statistics
Matches: 465, Mismatches: 81, Indels: 24
0.82 0.14 0.04
Matches are distributed among these distances:
77 5 0.01
78 96 0.21
79 328 0.71
80 32 0.07
81 4 0.01
ACGTcount: A:0.35, C:0.16, G:0.30, T:0.19
Consensus pattern (78 bp):
CAGGGGCACGTATGTGCAATCAGGGGTATGAAGTACAAACAGGGGCACGTATGTGCAATCAGGGG
TACCAAAGTACAA
Found at i:21365107 original size:19 final size:19
Alignment explanation
Indices: 21365085--21365124 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
21365075 TATGTGCAAT
21365085 CAGGGGTA-TCAAAGTACAA
1 CAGGGGTACT-AAAGTACAA
*
21365104 CAGGGGTACTGAAGTACAA
1 CAGGGGTACTAAAGTACAA
21365123 CA
1 CA
21365125 AGGGCATGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 18 0.95
20 1 0.05
ACGTcount: A:0.40, C:0.17, G:0.28, T:0.15
Consensus pattern (19 bp):
CAGGGGTACTAAAGTACAA
Found at i:21365294 original size:79 final size:78
Alignment explanation
Indices: 21365114--21365443 Score: 389
Period size: 79 Copynumber: 4.2 Consensus size: 78
21365104 CAGGGGTACT
* * * *
21365114 GAAGTACAACAAGGGCATGTATGTGCAATCAGAGGTATCGAAGTAC-AACAAGGGCACGTATGTG
1 GAAGTACAATAGGGGCACGTATGTGCAATCAG-GGTATCGAAGTACAAACAGGGGCACGTATGTG
* * *
21365178 CAATTAGGGGTACC
65 CAATCAGAGGTATC
* * * * ***
21365192 GAAGTACAATAGGGGTACGTATGTGTAATCACGGGTA-CTAAAGTACAAATAGTTACACGTATGT
1 GAAGTACAATAGGGGCACGTATGTGCAATCA-GGGTATC-GAAGTACAAACAGGGGCACGTATGT
21365256 GCAATCA-AGGTATC
64 GCAATCAGAGGTATC
*
21365270 GAAGTACAAACAGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAACAGGGGCACGTATGT
1 GAAGTAC-AATAGGGGCACGTATGTGCAATCA-GGGTATCGAAGTACAAACAGGGGCACGTATGT
* *
21365335 GCAATTAGGGGTA-C
64 GCAATCAGAGGTATC
* *
21365349 TGAAGTACAATAGGGGCACGTATGTGCAATCAGGAGTATGGAAGTACAAACAGGGGCATGTATGT
1 -GAAGTACAATAGGGGCACGTATGTGCAATCAGG-GTATCGAAGTACAAACAGGGGCACGTATGT
21365414 GCAATCAGAGGTATC
64 GCAATCAGAGGTATC
*
21365429 AAAGTACAATAGGGG
1 GAAGTACAATAGGGG
21365444 TACTGAAGTA
Statistics
Matches: 212, Mismatches: 31, Indels: 17
0.82 0.12 0.07
Matches are distributed among these distances:
77 1 0.00
78 50 0.24
79 148 0.70
80 13 0.06
ACGTcount: A:0.35, C:0.15, G:0.30, T:0.21
Consensus pattern (78 bp):
GAAGTACAATAGGGGCACGTATGTGCAATCAGGGTATCGAAGTACAAACAGGGGCACGTATGTGC
AATCAGAGGTATC
Found at i:21365609 original size:40 final size:40
Alignment explanation
Indices: 21365448--21365875 Score: 403
Period size: 40 Copynumber: 10.8 Consensus size: 40
21365438 TAGGGGTACT
* * *
21365448 GAAGTAC-AACAAGGGCATGTATGTGCAATCAGGGGTATC
1 GAAGTACAAACAGGGGCACGTATGTGCAATCAGAGGTATC
* *
21365487 GAAGTAC-AACAAGGGCACGTATATGCAATCA-AGGCTA-C
1 GAAGTACAAACAGGGGCACGTATGTGCAATCAGAGG-TATC
* * * * *
21365525 TAAAGTAC-AATAGGGGCACGTATGTGTAATCACATGTA-C
1 -GAAGTACAAACAGGGGCACGTATGTGCAATCAGAGGTATC
* * *
21365564 TAAAGTACAAACAGTGGCACGTATGTGCAATTAGAGGTATC
1 -GAAGTACAAACAGGGGCACGTATGTGCAATCAGAGGTATC
* *
21365605 AAAGTACAAATAGGGGCACGTATGTGCAATCA-AGGGTATC
1 GAAGTACAAACAGGGGCACGTATGTGCAATCAGA-GGTATC
* * * * * *
21365645 GAAGTACAAATAGGGGAACTTATGTACAATCAGGGGTACC
1 GAAGTACAAACAGGGGCACGTATGTGCAATCAGAGGTATC
* *
21365685 GAAGAAC-AACAGGGGCACGTATGTGCAATCAG-GAGTATG
1 GAAGTACAAACAGGGGCACGTATGTGCAATCAGAG-GTATC
* * * *
21365724 GAAGTACAAATAGGGGAAAGTATGTGCAATCA-AGGGCATC
1 GAAGTACAAACAGGGGCACGTATGTGCAATCAGA-GGTATC
*
21365764 GAAGTAC-AACAGGGGCACGTATGTGTAATCAGAGGTA-C
1 GAAGTACAAACAGGGGCACGTATGTGCAATCAGAGGTATC
* * *
21365802 TGAAGTACAAACAGGGGCACGTATGTACAATTAGGGGTATC
1 -GAAGTACAAACAGGGGCACGTATGTGCAATCAGAGGTATC
* * *
21365843 GAAGTACAAATAGGGGCACATATGTGTAATCAG
1 GAAGTACAAACAGGGGCACGTATGTGCAATCAG
21365876 GGGCACGTAT
Statistics
Matches: 323, Mismatches: 51, Indels: 29
0.80 0.13 0.07
Matches are distributed among these distances:
38 5 0.02
39 129 0.40
40 186 0.58
41 3 0.01
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.20
Consensus pattern (40 bp):
GAAGTACAAACAGGGGCACGTATGTGCAATCAGAGGTATC
Found at i:21365713 original size:79 final size:79
Alignment explanation
Indices: 21365432--21365874 Score: 414
Period size: 79 Copynumber: 5.6 Consensus size: 79
21365422 AGGTATCAAA
* * * *
21365432 GTACAAT-AGGGGTACTGAAGTACAACAAGGGCATGTATGTGCAATCAGGGGTATCGAAGTAC-A
1 GTACAATCAGGGGTACCGAAGTACAACAGGGGCACGTATGTGCAATCAAGGGTATCGAAGTACAA
*
21365495 ACAAGGGCACGTAT
66 ACAGGGGCACGTAT
* * * * ** * * * *
21365509 ATGCAATCAAGGCTACTAAAGTACAATAGGGGCACGTATGTGTAATCACA-TGTA-CTAAAGTAC
1 GTACAATCAGGGGTACCGAAGTACAACAGGGGCACGTATGTGCAATCA-AGGGTATC-GAAGTAC
*
21365572 AAACAGTGGCACGTAT
64 AAACAGGGGCACGTAT
* * * * * *
21365588 GTGCAATTAGAGGTATCAAAGTACAAATAGGGGCACGTATGTGCAATCAAGGGTATCGAAGTACA
1 GTACAATCAGGGGTACCGAAGTAC-AACAGGGGCACGTATGTGCAATCAAGGGTATCGAAGTACA
* * *
21365653 AATAGGGGAACTTAT
65 AACAGGGGCACGTAT
* *
21365668 GTACAATCAGGGGTACCGAAGAACAACAGGGGCACGTATGTGCAATC-AGGAGTATGGAAGTACA
1 GTACAATCAGGGGTACCGAAGTACAACAGGGGCACGTATGTGCAATCAAGG-GTATCGAAGTACA
* * *
21365732 AATAGGGGAAAGTAT
65 AACAGGGGCACGTAT
* * * * *
21365747 GTGCAATCAAGGGCATCGAAGTACAACAGGGGCACGTATGTGTAATC-AGAGGTA-CTGAAGTAC
1 GTACAATCAGGGGTACCGAAGTACAACAGGGGCACGTATGTGCAATCAAG-GGTATC-GAAGTAC
21365810 AAACAGGGGCACGTAT
64 AAACAGGGGCACGTAT
* * * * *
21365826 GTACAATTAGGGGTATCGAAGTACAAATAGGGGCACATATGTGTAATCA
1 GTACAATCAGGGGTACCGAAGTAC-AACAGGGGCACGTATGTGCAATCA
21365875 GGGGCACGTA
Statistics
Matches: 300, Mismatches: 54, Indels: 20
0.80 0.14 0.05
Matches are distributed among these distances:
77 6 0.02
78 45 0.15
79 164 0.55
80 84 0.28
81 1 0.00
ACGTcount: A:0.37, C:0.15, G:0.28, T:0.20
Consensus pattern (79 bp):
GTACAATCAGGGGTACCGAAGTACAACAGGGGCACGTATGTGCAATCAAGGGTATCGAAGTACAA
ACAGGGGCACGTAT
Found at i:21365878 original size:40 final size:40
Alignment explanation
Indices: 21364474--21365878 Score: 613
Period size: 39 Copynumber: 35.6 Consensus size: 40
21364464 GAATATAATC
* * * * * * *
21364474 AGGGGCATGTAAGTGCATTCAGGAGTACCGTAGTACAAAC
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
* * * * *
21364514 AGGGGTACGTATGTGAAATCAGGGGTACCAAAGTAC-AAC
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
* * * *
21364553 AGGGACACGTATGTGCAATTAGGAGTAT-GAAAGTACAAAC
1 AGGGGCACGTATGTGCAATCAGGGGTATCG-AAGTACAAAT
* * * *
21364593 AGGGGCACGTACGTGCAATCAAGGGCACCGAAGTAC-AAT
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
* * *
21364632 AGGGGCACATATGTGCAATCAGGGGTACCGAAGTA-AGAAC
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACA-AAT
* * *
21364672 AAGGGCATGTATGTGCAATCAGGGGTATCAAAGTAC-AAT
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
* * * * *
21364711 AGGGGAATGTATGTGTAATTAGGGGTA-CTGAAGTAC-AAC
1 AGGGGCACGTATGTGCAATCAGGGGTATC-GAAGTACAAAT
* *
21364750 AGGGGCATGTTTGTGCAATCAGGGGTATCGAAGTACAACA-
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAA-AT
21364790 A-GGGCACGTATGTGCAATCAGGGGTATCGAAGTAC-AAT
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
* * *
21364828 -GGGGCCACGTATGTGTAATCACGGGTA-CTAAAGTACAAAT
1 AGGGG-CACGTATGTGCAATCAGGGGTATC-GAAGTACAAAT
* * * * * *
21364868 AGTGCCACATATGTGCAATCAAGGGTATCAAAGTACAAAC
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
* *
21364908 AGGGGCACGTATGTGCAATCAGGGGTACCAAAGTAC-AAT
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
* *
21364947 AGGGGCACGTATGTGCAATCAGGAGTAT-GAAAGTACAAAC
1 AGGGGCACGTATGTGCAATCAGGGGTATCG-AAGTACAAAT
* * *
21364987 AGGGGCACGTATGTACAATCAGGGGCATCGAAGTAC-AAC
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
* * * *
21365026 AGGGGCAGGTATGTGCAATCAAGGGTACCGAAGTA-AGAAC
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACA-AAT
* * * * *
21365066 AAGGGAATGTATGTGCAATCAGGGGTATCAAAGTAC-AAC
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
* * * * * * *
21365105 AGGGGTAC-TGAAGTACAA-CAAGGGCAT-GTATGTGC-AAT
1 AGGGGCACGT-ATGTGCAATCAGGGGTATCG-AAGTACAAAT
* * * * * * * * *
21365143 CAGAGGTATCG-AAGTACAA-CAAGGGCA-CGTATGTGCAATT
1 -AGGGGCA-CGTATGTGCAATCAGGGGTATCG-AAGTACAAAT
* * * * **
21365183 AGGGGTACCG-AAGTACAAT-AGGGGTA-CGTATGT-GTAAT
1 AGGGGCA-CGTATGTGCAATCAGGGGTATCG-AAGTACAAAT
* * * * * * * *
21365221 CACGGGTAC-TAAAGTACAAAT-A--GTTACACGTATGTGC-AAT
1 -AGGGGCACGT-ATGTGC-AATCAGGGGTA-TCG-AAGTACAAAT
* * * * * * * *
21365261 CA-AGGTATCG-AAGTACAAACAGGGGCA-CGTATGTGC-AAT
1 -AGGGGCA-CGTATGTGCAATCAGGGGTATCG-AAGTACAAAT
* * * * * * * *
21365300 CAGGGGTATCG-AAGTACAAACAGGGGCA-CGTATGTGCAATT
1 -AGGGGCA-CGTATGTGCAATCAGGGGTATCG-AAGTACAAAT
* * * * * *
21365341 AGGGGTAC-TGAAGTACAAT-AGGGGCA-CGTATGTGC-AAT
1 AGGGGCACGT-ATGTGCAATCAGGGGTATCG-AAGTACAAAT
* * * * * * * * * *
21365379 CAGGAGTATGGAAGTACAAACAGGGGCAT-GTATGTGC-AAT
1 -AGGGGCACGTATGTGCAATCAGGGGTATCG-AAGTACAAAT
* * * * *
21365419 CAGAGGTATC-AAAGTACAAT-AGGGGTA-CTGAAGTACAACA-
1 -AGGGGCA-CGTATGTGCAATCAGGGGTATC-GAAGTACAA-AT
*
21365459 A-GGGCATGTATGTGCAATCAGGGGTATCGAAGTACAACA-
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAA-AT
* * * *
21365498 A-GGGCACGTATATGCAATCAAGGCTA-CTAAAGTAC-AAT
1 AGGGGCACGTATGTGCAATCAGGGGTATC-GAAGTACAAAT
* *** * *
21365536 AGGGGCACGTATGTGTAATCACATGTA-CTAAAGTACAAAC
1 AGGGGCACGTATGTGCAATCAGGGGTATC-GAAGTACAAAT
* * * *
21365576 AGTGGCACGTATGTGCAATTAGAGGTATCAAAGTACAAAT
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
*
21365616 AGGGGCACGTATGTGCAATCAAGGGTATCGAAGTACAAAT
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
* * * * * *
21365656 AGGGGAACTTATGTACAATCAGGGGTACCGAAGAAC-AAC
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
* *
21365695 AGGGGCACGTATGTGCAATCAGGAGTATGGAAGTACAAAT
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
* * * * *
21365735 AGGGGAAAGTATGTGCAATCAAGGGCATCGAAGTAC-AAC
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
* * *
21365774 AGGGGCACGTATGTGTAATCAGAGGTA-CTGAAGTACAAAC
1 AGGGGCACGTATGTGCAATCAGGGGTATC-GAAGTACAAAT
* *
21365814 AGGGGCACGTATGTACAATTAGGGGTATCGAAGTACAAAT
1 AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
* *
21365854 AGGGGCACATATGTGTAATCAGGGG
1 AGGGGCACGTATGTGCAATCAGGGG
21365879 CACGTATGTG
Statistics
Matches: 1109, Mismatches: 188, Indels: 136
0.77 0.13 0.09
Matches are distributed among these distances:
37 2 0.00
38 44 0.04
39 538 0.49
40 512 0.46
41 13 0.01
ACGTcount: A:0.35, C:0.15, G:0.29, T:0.20
Consensus pattern (40 bp):
AGGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAAAT
Found at i:21365878 original size:60 final size:60
Alignment explanation
Indices: 21365813--21365934 Score: 181
Period size: 60 Copynumber: 2.0 Consensus size: 60
21365803 GAAGTACAAA
* * *
21365813 CAGGGGCACGTATGTACAATTAGGGGTATCGAAGTACAAATAGGGGCACATATGTGTAAT
1 CAGGGGCACGTATGTACAATCAGGGGTATCGAAGCACAAATAGGGGCACATATGTGCAAT
* * **
21365873 CAGGGGCACGTATGTGCAATCAGGGGTATTGAAGCACAAATAGGGGCATGTATGTGCAAT
1 CAGGGGCACGTATGTACAATCAGGGGTATCGAAGCACAAATAGGGGCACATATGTGCAAT
21365933 CA
1 CA
21365935 AGGGTATCGA
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
60 55 1.00
ACGTcount: A:0.32, C:0.15, G:0.31, T:0.22
Consensus pattern (60 bp):
CAGGGGCACGTATGTACAATCAGGGGTATCGAAGCACAAATAGGGGCACATATGTGCAAT
Found at i:21365965 original size:39 final size:39
Alignment explanation
Indices: 21365873--21366205 Score: 416
Period size: 39 Copynumber: 8.5 Consensus size: 39
21365863 TATGTGTAAT
* ** *
21365873 CAGGGGCACGTATGTGCAATCAGGGGTATTGAAGCACAAA
1 CAGGGGCACGTATGTGCAATCAAGGGTACCGAAGTAC-AA
* * *
21365913 TAGGGGCATGTATGTGCAATCAAGGGTATCGAAGTACAA
1 CAGGGGCACGTATGTGCAATCAAGGGTACCGAAGTACAA
* * *
21365952 TAGGGGCACGTATGTGCAATTAGGGGTACCGAAGTACAA
1 CAGGGGCACGTATGTGCAATCAAGGGTACCGAAGTACAA
* * *
21365991 CAGGGGCACGTATGTGTAATCAAGTGTACTGAAGTACAAA
1 CAGGGGCACGTATGTGCAATCAAGGGTACCGAAGTAC-AA
* * *
21366031 CAAGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAA
1 CAGGGGCACGTATGTGCAATCAAGGGTACCGAAGTACAA
*
21366070 CAGGGGCACGTATGTGCAATC-AGGTGTACCGAAGGACAA
1 CAGGGGCACGTATGTGCAATCAAGG-GTACCGAAGTACAA
* * *
21366109 CAGGGGCACGTACGTGCAATTAGGGGTACCGAAGTACAAA
1 CAGGGGCACGTATGTGCAATCAAGGGTACCGAAGTAC-AA
*
21366149 CAGGGGCACGTATGTGCAATCTAGGGTACCGAAGTACAA
1 CAGGGGCACGTATGTGCAATCAAGGGTACCGAAGTACAA
* *
21366188 TACGGGCACGTATGTGCA
1 CAGGGGCACGTATGTGCA
21366206 TTCATATAAT
Statistics
Matches: 254, Mismatches: 35, Indels: 9
0.85 0.12 0.03
Matches are distributed among these distances:
38 2 0.01
39 150 0.59
40 102 0.40
ACGTcount: A:0.32, C:0.18, G:0.32, T:0.19
Consensus pattern (39 bp):
CAGGGGCACGTATGTGCAATCAAGGGTACCGAAGTACAA
Found at i:21365968 original size:79 final size:78
Alignment explanation
Indices: 21365873--21366205 Score: 452
Period size: 79 Copynumber: 4.2 Consensus size: 78
21365863 TATGTGTAAT
** * * *
21365873 CAGGGGCACGTATGTGCAATCAGGGGTATTGAAGCACAAATAGGGGCATGTATGTGCAATCAAGG
1 CAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC-AACAGGGGCACGTATGTGCAATCAAGG
*
21365938 GTATCGAAGTACAA
65 GTACCGAAGTACAA
* * * *
21365952 TAGGGGCACGTATGTGCAATTAGGGGTACCGAAGTACAACAGGGGCACGTATGTGTAATCAAGTG
1 CAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAACAGGGGCACGTATGTGCAATCAAGGG
*
21366017 TACTGAAGTACAAA
66 TACCGAAGTAC-AA
* *
21366031 CAAGGGCACGTATGTGCAATCAGGGGTATCGAAGTACAACAGGGGCACGTATGTGCAATC-AGGT
1 CAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAACAGGGGCACGTATGTGCAATCAAGG-
*
21366095 GTACCGAAGGACAA
65 GTACCGAAGTACAA
* * *
21366109 CAGGGGCACGTACGTGCAATTAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCTAGG
1 CAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTAC-AACAGGGGCACGTATGTGCAATCAAGG
21366174 GTACCGAAGTACAA
65 GTACCGAAGTACAA
* *
21366188 TACGGGCACGTATGTGCA
1 CAGGGGCACGTATGTGCA
21366206 TTCATATAAT
Statistics
Matches: 223, Mismatches: 27, Indels: 8
0.86 0.10 0.03
Matches are distributed among these distances:
78 70 0.31
79 150 0.67
80 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.32, T:0.19
Consensus pattern (78 bp):
CAGGGGCACGTATGTGCAATCAGGGGTACCGAAGTACAACAGGGGCACGTATGTGCAATCAAGGG
TACCGAAGTACAA
Found at i:21366081 original size:118 final size:117
Alignment explanation
Indices: 21365873--21366205 Score: 486
Period size: 118 Copynumber: 2.8 Consensus size: 117
21365863 TATGTGTAAT
* * * *
21365873 CAGGGGCACGTATGTGCAATCAGGGGTATTGAAGCACAAATAGGGGCATGTATGTGCAATCAAGG
1 CAGGGGCACGTATGTGCAATCAGGGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATC-AGG
* *
21365938 GTATCGAAGTACAATAGGGGCACGTATGTGCAATTAGGGGTACCGAAGTACAA
65 GTATCGAAGTACAATAGGGGCACGTATGTGCAATCAGGGGTACCGAAGGACAA
* * * *
21365991 CAGGGGCACGTATGTGTAATCAAGTGTACTGAAGTACAAACAAGGGCACGTATGTGCAATCAGGG
1 CAGGGGCACGTATGTGCAATCAGGGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATCA-GG
* *
21366056 GTATCGAAGTACAACAGGGGCACGTATGTGCAATCAGGTGTACCGAAGGACAA
65 GTATCGAAGTACAATAGGGGCACGTATGTGCAATCAGGGGTACCGAAGGACAA
* * *
21366109 CAGGGGCACGTACGTGCAATTAGGGGTACCGAAGTACAAACAGGGGCACGTATGTGCAATCTAGG
1 CAGGGGCACGTATGTGCAATCAGGGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATC-AGG
* *
21366174 GTACCGAAGTACAATACGGGCACGTATGTGCA
65 GTATCGAAGTACAATAGGGGCACGTATGTGCA
21366206 TTCATATAAT
Statistics
Matches: 191, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
117 1 0.01
118 189 0.99
119 1 0.01
ACGTcount: A:0.32, C:0.18, G:0.32, T:0.19
Consensus pattern (117 bp):
CAGGGGCACGTATGTGCAATCAGGGGTACTGAAGTACAAACAGGGGCACGTATGTGCAATCAGGG
TATCGAAGTACAATAGGGGCACGTATGTGCAATCAGGGGTACCGAAGGACAA
Found at i:21371856 original size:33 final size:35
Alignment explanation
Indices: 21371805--21371909 Score: 115
Period size: 40 Copynumber: 2.9 Consensus size: 35
21371795 ACGCATGTGC
* *
21371805 AATCAAGGGTACCTAAGTACAAATAGGGGCAC-GT
1 AATCAGGGGTACCGAAGTACAAATAGGGGCACTGT
*
21371839 -ATCAGGGGTACCGAAGTACAAACAGGGGCACGTATGT
1 AATCAGGGGTACCGAAGTACAAATAGGGGCAC---TGT
*
21371876 ACAATCAGGGGTATCGAAGTACAAATAGGGGCAC
1 --AATCAGGGGTACCGAAGTACAAATAGGGGCAC
21371910 ATATGTGCTT
Statistics
Matches: 59, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
33 28 0.47
37 2 0.03
40 29 0.49
ACGTcount: A:0.36, C:0.18, G:0.30, T:0.16
Consensus pattern (35 bp):
AATCAGGGGTACCGAAGTACAAATAGGGGCACTGT
Found at i:21371866 original size:20 final size:19
Alignment explanation
Indices: 21371841--21371906 Score: 69
Period size: 20 Copynumber: 3.3 Consensus size: 19
21371831 GGGCACGTAT
21371841 CAGGGGTACCGAAGTACAAA
1 CAGGGGTA-CGAAGTACAAA
* * *
21371861 CAGGGGCACGTATGTACAAT
1 CAGGGGTACG-AAGTACAAA
21371881 CAGGGGTATCGAAGTACAAA
1 CAGGGGTA-CGAAGTACAAA
*
21371901 TAGGGG
1 CAGGGG
21371907 CACATATGTG
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 2 0.05
20 33 0.89
21 2 0.05
ACGTcount: A:0.35, C:0.17, G:0.33, T:0.15
Consensus pattern (19 bp):
CAGGGGTACGAAGTACAAA
Found at i:21371894 original size:40 final size:40
Alignment explanation
Indices: 21371839--21371915 Score: 127
Period size: 40 Copynumber: 1.9 Consensus size: 40
21371829 AGGGGCACGT
*
21371839 ATCAGGGGTACCGAAGTACAAACAGGGGCACGTATGTACA
1 ATCAGGGGTACCGAAGTACAAACAGGGGCACATATGTACA
* *
21371879 ATCAGGGGTATCGAAGTACAAATAGGGGCACATATGT
1 ATCAGGGGTACCGAAGTACAAACAGGGGCACATATGT
21371916 GCTTTCGTAC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.35, C:0.17, G:0.30, T:0.18
Consensus pattern (40 bp):
ATCAGGGGTACCGAAGTACAAACAGGGGCACATATGTACA
Found at i:21374532 original size:21 final size:20
Alignment explanation
Indices: 21374506--21374561 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 20
21374496 AACATAGAAA
21374506 ATTTGTTTCAATTTTTATGTT
1 ATTTGTTTCAATTTTTAT-TT
21374527 ATTTGTTTCAATTTTTATTT
1 ATTTGTTTCAATTTTTATTT
* * *
21374547 TTTTCTTTTAATTTT
1 ATTTGTTTCAATTTT
21374562 ATTGCCAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 14 0.44
21 18 0.56
ACGTcount: A:0.18, C:0.05, G:0.05, T:0.71
Consensus pattern (20 bp):
ATTTGTTTCAATTTTTATTT
Found at i:21378451 original size:35 final size:35
Alignment explanation
Indices: 21378392--21378492 Score: 132
Period size: 35 Copynumber: 2.9 Consensus size: 35
21378382 TCGTCTTTCG
* *
21378392 AAGG-GACACCATGTAAACGATATATAGGTCATTT
1 AAGGTGACACCATGTAAATGATATATAGGTCATTC
* * * *
21378426 AAGGTGGCACCGTGTAAATGGTATATAGGTCCTTC
1 AAGGTGACACCATGTAAATGATATATAGGTCATTC
*
21378461 AGGGTGACACCATGTAAATGATATATAGGTCA
1 AAGGTGACACCATGTAAATGATATATAGGTCA
21378493 GGCAAGGCAA
Statistics
Matches: 55, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
34 4 0.07
35 51 0.93
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.27
Consensus pattern (35 bp):
AAGGTGACACCATGTAAATGATATATAGGTCATTC
Found at i:21380079 original size:101 final size:102
Alignment explanation
Indices: 21379957--21380141 Score: 295
Period size: 101 Copynumber: 1.8 Consensus size: 102
21379947 AAAGTGATGG
* *
21379957 TCACGTGTGTAGTACTTTGTGCAGGCTACTACGTGTACCGGAATGAT-A-GGTTACATGTGTAGT
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGG-ATGATAATGGTCACATGTGTAGT
21380020 ACTATGTGCA-GACTACTATGCGTACCAAATAGTTTTGA
65 ACTATGTGCAGGA-TACTATGCGTACCAAATAGTTTTGA
* *
21380058 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGATGGTAATGGTCACATGTGTAGTA
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGATAATGGTCACATGTGTAGTA
21380123 CTATGTGCAGGATACTATG
66 CTATGTGCAGGATACTATG
21380142 TGAATGGAAC
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
100 4 0.05
101 40 0.52
102 31 0.40
103 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (102 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGATACTATGCGTACCAAATAGTTTTGA
Found at i:21380080 original size:51 final size:51
Alignment explanation
Indices: 21380009--21380141 Score: 151
Period size: 51 Copynumber: 2.6 Consensus size: 51
21379999 ATGATAGGTT
**
21380009 ACATGTGTAGTACTATGTGCAGACTACTATGCGTACCAAATAGTTTTGATC
1 ACATGTGTAGTACTATGTGCAGACTACTATGCGTACCAAATAGTAATGATC
* * * * *** * *
21380060 ACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGATGGTAATGGTC
1 ACATGTGTAGTACTATGTGCAGACTACTATGCGTACCAAATAGTAATGATC
21380111 ACATGTGTAGTACTATGTGCAGGA-TACTATG
1 ACATGTGTAGTACTATGTGCA-GACTACTATG
21380142 TGAATGGAAC
Statistics
Matches: 67, Mismatches: 14, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
51 66 0.99
52 1 0.01
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (51 bp):
ACATGTGTAGTACTATGTGCAGACTACTATGCGTACCAAATAGTAATGATC
Found at i:21380201 original size:45 final size:45
Alignment explanation
Indices: 21380150--21380238 Score: 151
Period size: 45 Copynumber: 2.0 Consensus size: 45
21380140 TGTGAATGGA
* *
21380150 ACATCATTAATTAGTAAGGTGGTTGCTATGTGCTGATTCCACCGG
1 ACATCATTAATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
*
21380195 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
1 ACATCATTAATTAATAAGGTGGTTGCTATGTGCTGAATCCACCG
21380239 AGTATCTGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.26, C:0.18, G:0.24, T:0.33
Consensus pattern (45 bp):
ACATCATTAATTAATAAGGTGGTTGCTATGTGCTGAATCCACCGG
Found at i:21383098 original size:14 final size:14
Alignment explanation
Indices: 21383079--21383116 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
21383069 GTTTGCCAGT
21383079 AAAATG-TTTTCCGG
1 AAAATGATTTT-CGG
*
21383093 AAAATGATTTTTGG
1 AAAATGATTTTCGG
21383107 AAAATGATTT
1 AAAATGATTT
21383117 ACTTTTCTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 18 0.82
15 4 0.18
ACGTcount: A:0.37, C:0.05, G:0.18, T:0.39
Consensus pattern (14 bp):
AAAATGATTTTCGG
Found at i:21383256 original size:20 final size:20
Alignment explanation
Indices: 21383233--21383271 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
21383223 ATTTTTACAT
21383233 ATATTAATAAATTTATATAC
1 ATATTAATAAATTTATATAC
*
21383253 ATATTAATAAATTTTTATA
1 ATATTAATAAATTTATATA
21383272 TTTTAAATTA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (20 bp):
ATATTAATAAATTTATATAC
Found at i:21386506 original size:13 final size:13
Alignment explanation
Indices: 21386490--21386514 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
21386480 GAGAAAGAAC
21386490 GATGGACAGAGAT
1 GATGGACAGAGAT
21386503 GATGGACAGAGA
1 GATGGACAGAGA
21386515 GGAAGGGAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.08, G:0.40, T:0.12
Consensus pattern (13 bp):
GATGGACAGAGAT
Found at i:21387140 original size:43 final size:43
Alignment explanation
Indices: 21387081--21387210 Score: 172
Period size: 43 Copynumber: 3.0 Consensus size: 43
21387071 TACCAGATGA
21387081 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACCAGGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACCAGGTAT
* * *
21387124 CATTGATTATACGGGTGGTGTTATGTGCTGATCCACC-GTGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACCAG-GTAT
* * * * *
21387167 CATTAACTATAAAGCTGGTGCTATGTGCTGATCTACCATGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACCAGGTAT
21387210 C
1 C
21387211 TGTTATTATT
Statistics
Matches: 74, Mismatches: 11, Indels: 4
0.83 0.12 0.04
Matches are distributed among these distances:
42 1 0.01
43 73 0.99
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (43 bp):
CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACCAGGTAT
Found at i:21387255 original size:44 final size:44
Alignment explanation
Indices: 21387206--21387308 Score: 163
Period size: 44 Copynumber: 2.3 Consensus size: 44
21387196 GATCTACCAT
21387206 GTATCTGTTATTATTGGTGGCACGGACTATGTT-CAGGCCACCGC
1 GTATCTGTTATTATTGGTGGCACGGACTAT-TTGCAGGCCACCGC
* * *
21387250 GTATCTGTTATTATTGGTGGTACGGACTGTTTGCAGGCCACCGT
1 GTATCTGTTATTATTGGTGGCACGGACTATTTGCAGGCCACCGC
21387294 GTATCTGTTATTATT
1 GTATCTGTTATTATT
21387309 CCGATGAGTT
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
43 2 0.04
44 53 0.96
ACGTcount: A:0.17, C:0.18, G:0.26, T:0.38
Consensus pattern (44 bp):
GTATCTGTTATTATTGGTGGCACGGACTATTTGCAGGCCACCGC
Found at i:21391660 original size:43 final size:43
Alignment explanation
Indices: 21391533--21391662 Score: 188
Period size: 43 Copynumber: 3.0 Consensus size: 43
21391523 TACCAAATGG
*
21391533 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGGGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
* * * * *
21391576 CATTGATTATACGAGTGGTGTTATGTGCTGATCCATTGTGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
* *
21391619 CATTAACTATAAGGGTGGTGCTATGTGCTGATCCACCGTGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
21391662 C
1 C
21391663 TGTTATTATT
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 74 1.00
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (43 bp):
CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
Found at i:21391707 original size:44 final size:44
Alignment explanation
Indices: 21391659--21391760 Score: 150
Period size: 44 Copynumber: 2.3 Consensus size: 44
21391649 ATCCACCGTG
*
21391659 TATCTGTTATTATTGGTGGCACGGACTATGTGTAGGCCACCGCC
1 TATCTGTTATTATTGGTGGCACGGACTATGTGCAGGCCACCGCC
* * * **
21391703 TATCTATTATTATTGGTGGTACGGACTGTGTGCAGGCCACCGTG
1 TATCTGTTATTATTGGTGGCACGGACTATGTGCAGGCCACCGCC
21391747 TATCTGTTATTATT
1 TATCTGTTATTATT
21391761 CCGATGAGTT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (44 bp):
TATCTGTTATTATTGGTGGCACGGACTATGTGCAGGCCACCGCC
Found at i:21395765 original size:44 final size:44
Alignment explanation
Indices: 21395676--21395766 Score: 105
Period size: 44 Copynumber: 2.1 Consensus size: 44
21395666 GTTTTAATCC
* * * *
21395676 ACTCCATTGCAACTTCAAGGAGATAGGATTATTTTCTTCTGTCT
1 ACTCCACTGCAACTTCAAGGAGATAAGATTAGTATCTTCTGTCT
*
21395720 ACTCCACTGCAATTTCAAGGAGATAAGACTT-GTATCTT-TGATCT
1 ACTCCACTGCAACTTCAAGGAGATAAGA-TTAGTATCTTCTG-TCT
21395764 ACT
1 ACT
21395767 TCGCCACCAG
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
43 2 0.05
44 36 0.90
45 2 0.05
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.36
Consensus pattern (44 bp):
ACTCCACTGCAACTTCAAGGAGATAAGATTAGTATCTTCTGTCT
Found at i:21395802 original size:45 final size:43
Alignment explanation
Indices: 21395750--21395899 Score: 149
Period size: 45 Copynumber: 3.4 Consensus size: 43
21395740 AGATAAGACT
21395750 TGTATCTTTGATCTACTTCGCCACCAGTATGGGAAGACAAGATC
1 TGTATCTTTGATCTACTTC-CCACCAGTATGGGAAGACAAGATC
* * **
21395794 TGCTATCTTTGATCTACTTCACGCCAGTATATGAAGACAAGATC
1 TG-TATCTTTGATCTACTTCCCACCAGTATGGGAAGACAAGATC
** * * *
21395838 TGTTAGT-TTCAATCTACTCTACCACCAGTATGGGGAGACAAGATT
1 TG-TA-TCTTTGATCTACT-TCCCACCAGTATGGGAAGACAAGATC
*
21395883 TGTCGTCTTTGATCTAC
1 TGT-ATCTTTGATCTAC
21395900 ATCATGCCAA
Statistics
Matches: 84, Mismatches: 17, Indels: 9
0.76 0.15 0.08
Matches are distributed among these distances:
44 37 0.44
45 47 0.56
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.33
Consensus pattern (43 bp):
TGTATCTTTGATCTACTTCCCACCAGTATGGGAAGACAAGATC
Found at i:21404036 original size:20 final size:20
Alignment explanation
Indices: 21404011--21404050 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
21404001 TAAAGGTCTT
21404011 TAATGCATATGATGCGATGC
1 TAATGCATATGATGCGATGC
21404031 TAATGCATATGATGCGATGC
1 TAATGCATATGATGCGATGC
21404051 ATGAGGTGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (20 bp):
TAATGCATATGATGCGATGC
Found at i:21405109 original size:43 final size:43
Alignment explanation
Indices: 21404982--21405111 Score: 188
Period size: 43 Copynumber: 3.0 Consensus size: 43
21404972 TACCAAATGG
*
21404982 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGGGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
* * * * *
21405025 CATTGATTATACGAGTGGTGTTATGTGCTGATCCATTGTGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
* *
21405068 CATTAACTATAAGGGTGGTGCTATGTGCTGATCCACCGTGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
21405111 C
1 C
21405112 TGTTATTATT
Statistics
Matches: 74, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 74 1.00
ACGTcount: A:0.22, C:0.16, G:0.27, T:0.35
Consensus pattern (43 bp):
CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
Found at i:21405156 original size:44 final size:44
Alignment explanation
Indices: 21405108--21405209 Score: 150
Period size: 44 Copynumber: 2.3 Consensus size: 44
21405098 ATCCACCGTG
*
21405108 TATCTGTTATTATTGGTGGCACGGACTATGTGTAGGCCACCGCC
1 TATCTGTTATTATTGGTGGCACGGACTATGTGCAGGCCACCGCC
* * * **
21405152 TATCTATTATTATTGGTGGTACGGACTGTGTGCAGGCCACCGTG
1 TATCTGTTATTATTGGTGGCACGGACTATGTGCAGGCCACCGCC
21405196 TATCTGTTATTATT
1 TATCTGTTATTATT
21405210 CCGATGAGTT
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.37
Consensus pattern (44 bp):
TATCTGTTATTATTGGTGGCACGGACTATGTGCAGGCCACCGCC
Found at i:21409560 original size:43 final size:43
Alignment explanation
Indices: 21409433--21409562 Score: 197
Period size: 43 Copynumber: 3.0 Consensus size: 43
21409423 TACCAAATGG
*
21409433 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGGGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
* * * * *
21409476 CATTGATTATACGAGTGGTGTTATGTGCTGATCCATTGTGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
*
21409519 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACCGTGTAT
1 CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
21409562 C
1 C
21409563 TGTTATTATT
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 75 1.00
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.35
Consensus pattern (43 bp):
CATTGACTATAAGGGTGGTGCTATGTGCTGATCCACTGTGTAT
Found at i:21415919 original size:89 final size:87
Alignment explanation
Indices: 21415808--21416232 Score: 319
Period size: 89 Copynumber: 4.8 Consensus size: 87
21415798 ATTCTAATCC
* * * * * *
21415808 ACTCCACTACAACTTTAGGGAGATAGGATTTGTTTATTCAGTCTGCCCCACTACAATTTCAAGGG
1 ACTCCACTGCAACTTTAGGGAGATAAGACTTGTTTCTTCAGTCTGCCCCACTGCAA-CTCAAGGG
* *
21415873 GATAAGACTTGCTTTCTTGAGTCT
65 GATAAGACTTGCTTAC-TCAGTCT
* * * *
21415897 GCTCCACTGCAACTTTAAGGAGATAAGACTTGTCATCTTCAGTCTGCCCCACTGCAACTCTAGGA
1 ACTCCACTGCAACTTTAGGGAGATAAGACTTGT-TTCTTCAGTCTGCCCCACTGCAACTCAAGG-
21415962 GGATAAGACTTGCTTACTCAGTCT
64 GGATAAGACTTGCTTACTCAGTCT
* * * *
21415986 ACTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTGAGTCTACCCCACTGCAACCTCAGGG
1 ACTCCACTGCAACTTTAGGGAGATAAGACTTG-TTTCTTCAGTCTGCCCCACTGCAA-CTCAAGG
* * * *
21416051 GGATAAGACTAG-ATGC-GA-TCT
64 GGATAAGACTTGCTTACTCAGTCT
* * * * * ** * * * * ** *
21416072 GCT-CTCTGCAACTTCAGAGAGATAAGA-TCTATCACTTTAATCCGCTCCACTGCAACTTTAGGA
1 ACTCCACTGCAACTTTAGGGAGATAAGACT-TGTTTCTTCAGTCTGCCCCACTGCAACTCAAGGG
* * *
21416135 GATAGGATTATTGGCTT--T-AATCT
65 GATAAGA--CTT-GCTTACTCAGTCT
* *
21416158 ACTCCACTGCAACTTTAGGGAGATAAGATTTGTTATCTTCAGTCTGCCCCACTGGAACTTC-AGG
1 ACTCCACTGCAACTTTAGGGAGATAAGACTTGTT-TCTTCAGTCTGCCCCACTGCAAC-TCAAGG
21416222 AGGATAAGACT
64 -GGATAAGACT
21416233 GGATGCGATC
Statistics
Matches: 261, Mismatches: 59, Indels: 34
0.74 0.17 0.10
Matches are distributed among these distances:
83 10 0.04
84 18 0.07
85 25 0.10
86 11 0.04
87 26 0.10
88 23 0.09
89 106 0.41
90 42 0.16
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (87 bp):
ACTCCACTGCAACTTTAGGGAGATAAGACTTGTTTCTTCAGTCTGCCCCACTGCAACTCAAGGGG
ATAAGACTTGCTTACTCAGTCT
Found at i:21416127 original size:44 final size:43
Alignment explanation
Indices: 21416068--21416312 Score: 149
Period size: 44 Copynumber: 5.7 Consensus size: 43
21416058 ACTAGATGCG
*
21416068 ATCTGCT-CTCTGCAACTTCAGAGAGATAAGATCTATCACTTTA
1 ATCTGCTCCACTGCAACTTCAG-GAGATAAGATCTATCACTTTA
* * * **
21416111 ATCCGCTCCACTGCAACTTTAGGAGATAGGAT-TATTGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGGAGATAAGATCTA-TCACTTTA
* * * * * *
21416154 ATCTACTCCACTGCAACTTTAGGGAGATAAGATTTGTTATCTTCA
1 ATCTGCTCCACTGCAACTTCA-GGAGATAAGATCTATCA-CTTTA
* * * ** ***
21416199 GTCTGCCCCACTGGAACTTCAGGAGGATAAGA-CT-GGA-TGCG
1 ATCTGCTCCACTGCAACTTCAGGA-GATAAGATCTATCACTTTA
*** * *
21416240 ATCTGCTCTTTTGCAACTTCAGAGAGATAAGATCCATCATTTTA
1 ATCTGCTCCACTGCAACTTCAG-GAGATAAGATCTATCACTTTA
* *
21416284 ATCCGCTCCACTGTAACTTCAGGGAGATA
1 ATCTGCTCCACTGCAACTTCA-GGAGATA
21416313 GGATTGGTTC
Statistics
Matches: 151, Mismatches: 40, Indels: 21
0.71 0.19 0.10
Matches are distributed among these distances:
41 25 0.17
42 5 0.03
43 42 0.28
44 50 0.33
45 29 0.19
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (43 bp):
ATCTGCTCCACTGCAACTTCAGGAGATAAGATCTATCACTTTA
Found at i:21416180 original size:172 final size:174
Alignment explanation
Indices: 21415983--21416317 Score: 523
Period size: 172 Copynumber: 1.9 Consensus size: 174
21415973 GCTTACTCAG
*
21415983 TCTACTCCACTGCAACTTCAGGGAGATAAGACTTGCTT-TCTTGAGTCTACCCCACTGCAACCTC
1 TCTACTCCACTGCAACTTCAGGGAGATAAGACTTG-TTATCTTCAGTCTACCCCACTGCAACCTC
* *
21416047 AGGGGGATAAGACTAGATGCGATCTGCTC-TCTGCAACTTCAGAGAGATAAGATCTATCACTTTA
65 AGGAGGATAAGACTAGATGCGATCTGCTCTTCTGCAACTTCAGAGAGATAAGATCCATCACTTTA
*
21416111 ATCCGCTCCACTGCAACTTTA-GGAGATAGGATTATTGGCTTTAA
130 ATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAA
* * * * *
21416155 TCTACTCCACTGCAACTTTAGGGAGATAAGATTTGTTATCTTCAGTCTGCCCCACTGGAACTTCA
1 TCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTTATCTTCAGTCTACCCCACTGCAACCTCA
* * *
21416220 GGAGGATAAGACTGGATGCGATCTGCTCTTTTGCAACTTCAGAGAGATAAGATCCATCATTTTAA
66 GGAGGATAAGACTAGATGCGATCTGCTCTTCTGCAACTTCAGAGAGATAAGATCCATCACTTTAA
*
21416285 TCCGCTCCACTGTAACTTCAGGGAGATAGGATT
131 TCCGCTCCACTGCAACTTCAGGGAGATAGGATT
21416318 GGTTCTTCTA
Statistics
Matches: 147, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
171 2 0.01
172 82 0.56
173 51 0.35
174 12 0.08
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.29
Consensus pattern (174 bp):
TCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTTATCTTCAGTCTACCCCACTGCAACCTCA
GGAGGATAAGACTAGATGCGATCTGCTCTTCTGCAACTTCAGAGAGATAAGATCCATCACTTTAA
TCCGCTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAA
Found at i:21416228 original size:45 final size:45
Alignment explanation
Indices: 21415844--21416232 Score: 233
Period size: 45 Copynumber: 8.8 Consensus size: 45
21415834 GATTTGTTTA
* *
21415844 TTCAGTCTGCCCCACTACAATTTCAAGG-GGATAAGACTTGCTT-TC
1 TTCAGTCTGCCCCACTGCAACTTC-AGGAGGATAAGACTTG-TTATC
* * * *
21415889 TTGAGTCTGCTCCACTGCAACTTTAAGGA-GATAAGACTTGTCATC
1 TTCAGTCTGCCCCACTGCAAC-TTCAGGAGGATAAGACTTGTTATC
21415934 TTCAGTCTGCCCCACTGCAAC-TCTAGGAGGATAAGACTTGCTTA-C
1 TTCAGTCTGCCCCACTGCAACTTC-AGGAGGATAAGACTTG-TTATC
* *
21415979 -TCAGTCTACTCCACTGCAACTTCAGG-GAGATAAGACTTGCTT-TC
1 TTCAGTCTGCCCCACTGCAACTTCAGGAG-GATAAGACTTG-TTATC
* * * * *
21416023 TTGAGTCTACCCCACTGCAACCTCAGGGGGATAAGACTAG--A--
1 TTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGTTATC
* * * * *
21416064 TGC-GATCTG-CTCTCTGCAACTTCA-GAGAGATAAGA-TCTATCA-C
1 TTCAG-TCTGCCCCACTGCAACTTCAGGAG-GATAAGACT-TGTTATC
* * * * * * * **
21416107 TTTAATCCGCTCCACTGCAACTTTAGGA-GATAGGA-TTATTGGC
1 TTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGTTATC
* * * * * *
21416150 TTTAATCTACTCCACTGCAACTTTAGG-GAGATAAGATTTGTTATC
1 TTCAGTCTGCCCCACTGCAACTTCAGGAG-GATAAGACTTGTTATC
*
21416195 TTCAGTCTGCCCCACTGGAACTTCAGGAGGATAAGACT
1 TTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACT
21416233 GGATGCGATC
Statistics
Matches: 269, Mismatches: 49, Indels: 52
0.73 0.13 0.14
Matches are distributed among these distances:
39 3 0.01
40 20 0.07
41 4 0.01
42 4 0.01
43 39 0.14
44 58 0.22
45 135 0.50
46 6 0.02
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (45 bp):
TTCAGTCTGCCCCACTGCAACTTCAGGAGGATAAGACTTGTTATC
Found at i:21416506 original size:50 final size:50
Alignment explanation
Indices: 21416449--21416630 Score: 158
Period size: 50 Copynumber: 3.7 Consensus size: 50
21416439 GTCAGGAAAC
*
21416449 AAGATTCGCCGTCGTAGCTTCAATCTATTCCACTACATCCCTAGGGAAGT
1 AAGATTCGCCGTTGTAGCTTCAATCTATTCCACTACATCCCTAGGGAAGT
* * * * * * **
21416499 AAGATTCGTCGTTGTGGCTTCAATCTATT-AATTGTA-AT--GTCGGGAAAC
1 AAGATTCGCCGTTGTAGCTTCAATCTATTCCA--CTACATCCCTAGGGAAGT
* * * * * *
21416547 AAGATTCACCGTAGTAGCTTCAATCTGTTCCATTGCATCGCC-ATGGAAGT
1 AAGATTCGCCGTTGTAGCTTCAATCTATTCCACTACATC-CCTAGGGAAGT
*
21416597 AAGATTCGCCGTTGTGGCTTCAATCTATTCCACT
1 AAGATTCGCCGTTGTAGCTTCAATCTATTCCACT
21416631 GTAATGCCAA
Statistics
Matches: 98, Mismatches: 27, Indels: 14
0.71 0.19 0.10
Matches are distributed among these distances:
47 1 0.01
48 32 0.33
49 2 0.02
50 61 0.62
51 2 0.02
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.32
Consensus pattern (50 bp):
AAGATTCGCCGTTGTAGCTTCAATCTATTCCACTACATCCCTAGGGAAGT
Found at i:21416570 original size:98 final size:98
Alignment explanation
Indices: 21416324--21416625 Score: 426
Period size: 98 Copynumber: 3.1 Consensus size: 98
21416314 GATTGGTTCT
* *
21416324 TCTATTTAACTGCAATGTCAGGAAACAAGATTCACCGTCGTAGCTCCAATCTGTTCCATTGCATC
1 TCTA-TTAATTGCAATGTCAGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCATTGCATC
* * * *
21416389 GCCAGGGAAGTAAGACTCCCCATTGTGGCCTCAA
65 GCCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAA
* * * * *
21416423 TCTTTTTAATTGCAATGTCAGGAAACAAGATTCGCCGTCGTAGCTTCAATCTATTCCACTACATC
1 TC-TATTAATTGCAATGTCAGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCATTGCATC
*
21416488 -CCTAGGGAAGTAAGATTCGTCGTTGTGGCTTCAA
65 GCC-AGGGAAGTAAGATTCGCCGTTGTGGCTTCAA
* * *
21416522 TCTATTAATTGTAATGTCGGGAAACAAGATTCACCGTAGTAGCTTCAATCTGTTCCATTGCATCG
1 TCTATTAATTGCAATGTCAGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCATTGCATCG
*
21416587 CCATGGAAGTAAGATTCGCCGTTGTGGCTTCAA
66 CCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAA
21416620 TCTATT
1 TCTATT
21416626 CCACTGTAAT
Statistics
Matches: 178, Mismatches: 22, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
98 91 0.51
99 86 0.48
100 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.31
Consensus pattern (98 bp):
TCTATTAATTGCAATGTCAGGAAACAAGATTCACCGTCGTAGCTTCAATCTGTTCCATTGCATCG
CCAGGGAAGTAAGATTCGCCGTTGTGGCTTCAA
Found at i:21417065 original size:45 final size:45
Alignment explanation
Indices: 21416927--21417065 Score: 131
Period size: 45 Copynumber: 3.1 Consensus size: 45
21416917 GATCCACTTT
* * *
21416927 ACTGCCAATACAGGAAGACAAGATCTTCTA-TTTTCAACCTACTCT
1 ACTGCTAATACAGGAAGACAAGATCTACTACTTTT-AACCTACTCC
* * * ** * * * *
21416972 ACTGCTACT-CAGGGAGACAAG-GCTGGTACCTTTGATCTACTTC
1 ACTGCTAATACAGGAAGACAAGATCTACTACTTTTAACCTACTCC
*
21417015 GCTGCTAATACAGGAAGACAAGATCTACTACTTTTAACCTACTCC
1 ACTGCTAATACAGGAAGACAAGATCTACTACTTTTAACCTACTCC
21417060 ACTGCT
1 ACTGCT
21417066 GCTCAGGGAG
Statistics
Matches: 69, Mismatches: 22, Indels: 6
0.71 0.23 0.06
Matches are distributed among these distances:
43 17 0.25
44 25 0.36
45 27 0.39
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (45 bp):
ACTGCTAATACAGGAAGACAAGATCTACTACTTTTAACCTACTCC
Found at i:21417082 original size:88 final size:88
Alignment explanation
Indices: 21416828--21417084 Score: 304
Period size: 88 Copynumber: 2.9 Consensus size: 88
21416818 CGGGTGTCTC
* * * * * *
21416828 CGATCTGCTTTGCTACTAGTACAGGAAGGCAAGATCTGT-CATTTTCAACATACTCCACTGCTGC
1 CGATCTACTTTGCTGCTAATACAGGAAGACAAGATCTCTAC-TTTTCAACCTACTCCACTGCTGC
* * * *
21416892 TTAGGGAGATAAAGCTAGTATCTT
65 TCAGGGAGATAAGGCTGGTACCTT
* * * * *
21416916 CGATCCACTTTACTGCCAATACAGGAAGACAAGATCTTCTA-TTTTCAACCTACTCTACTGCTAC
1 CGATCTACTTTGCTGCTAATACAGGAAGACAAGATC-TCTACTTTTCAACCTACTCCACTGCTGC
*
21416980 TCAGGGAGACAAGGCTGGTACCTT
65 TCAGGGAGATAAGGCTGGTACCTT
* *
21417004 TGATCTACTTCGCTGCTAATACAGGAAGACAAGATCTACTACTTTT-AACCTACTCCACTGCTGC
1 CGATCTACTTTGCTGCTAATACAGGAAGACAAGATCT-CTACTTTTCAACCTACTCCACTGCTGC
21417068 TCAGGGAGATAAGGCTG
65 TCAGGGAGATAAGGCTG
21417085 AGGTCTCACC
Statistics
Matches: 141, Mismatches: 24, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
87 1 0.01
88 134 0.95
89 6 0.04
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (88 bp):
CGATCTACTTTGCTGCTAATACAGGAAGACAAGATCTCTACTTTTCAACCTACTCCACTGCTGCT
CAGGGAGATAAGGCTGGTACCTT
Found at i:21418335 original size:7 final size:7
Alignment explanation
Indices: 21418316--21418370 Score: 69
Period size: 7 Copynumber: 7.9 Consensus size: 7
21418306 TTAGCCTCTC
21418316 CATTTTT
1 CATTTTT
*
21418323 -ACTTTTC
1 CA-TTTTT
21418330 CATTTTT
1 CATTTTT
21418337 CATTTTT
1 CATTTTT
21418344 CATTTTT
1 CATTTTT
21418351 CA-TTTT
1 CATTTTT
21418357 CATTTCTT
1 CATTT-TT
21418365 CATTTT
1 CATTTT
21418371 CTCACATCAC
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
6 7 0.17
7 27 0.64
8 8 0.19
ACGTcount: A:0.15, C:0.18, G:0.00, T:0.67
Consensus pattern (7 bp):
CATTTTT
Done.