Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 71 of 170
Found at i:21425279 original size:2 final size:2
Alignment explanation
Indices: 21425274--21425333 Score: 50
Period size: 2 Copynumber: 30.5 Consensus size: 2
21425264 GTTAGAAAAA
* * * * * *
21425274 AT AT AT AA AT AT AT AT AC AT AT AC AT AT AT AT A- AA AA AT AG
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
21425315 AT AT AT AC AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
21425334 GATTATAAAA
Statistics
Matches: 46, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
1 1 0.02
2 45 0.98
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (2 bp):
AT
Found at i:21425327 original size:37 final size:35
Alignment explanation
Indices: 21425269--21425348 Score: 97
Period size: 37 Copynumber: 2.2 Consensus size: 35
21425259 TATTCGTTAG
* *
21425269 AAAAAATATATAAATATATATACATATACATATATA
1 AAAAAATAGATAAATACATATACATATACAT-TATA
* * *
21425305 TAAAAAATAGATATATACATATATATATAGATTATA
1 -AAAAAATAGATAAATACATATACATATACATTATA
21425341 AAAAAATA
1 AAAAAATA
21425349 ATTACATATA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
35 8 0.21
36 4 0.11
37 26 0.68
ACGTcount: A:0.61, C:0.04, G:0.03, T:0.33
Consensus pattern (35 bp):
AAAAAATAGATAAATACATATACATATACATTATA
Found at i:21431721 original size:138 final size:135
Alignment explanation
Indices: 21431550--21431964 Score: 618
Period size: 138 Copynumber: 3.0 Consensus size: 135
21431540 ACATAGATAA
*
21431550 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACTAAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTA-TGAATTTATTAAT-
* * *
21431615 AAAATAATTTTATTAATTAATTTCGGTCAAAATATAAAAGACATTAAAATTAATATTCTTTTGGA
64 AAAA-AATTATATTAATTAATTTCAGTCAAAATATAAAAGACATTAAAATTAATATTCTTTTAGA
**
21431680 AAGGGTAT
128 AAGAATAT
21431688 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATTGAATTTATTAATA
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTA-TGAATTTATTAATA
* * * *
21431753 TAAACAATTAAATTAATTACTTTCAGTCAAACTATAAAAGGCA-TAGAAATTAATATTCTTTTAG
65 -AAA-AATTATATTAATTAATTTCAGTCAAAATATAAAAGACATTA-AAATTAATATTCTTTTAG
21431817 AAAGAATAT
127 AAAGAATAT
21431826 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATCGAATTTATTAAT-
1 AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTAT-GAATTTATTAATA
* * *
21431890 AAAAATTATATTAATTAATTTCAGTCAATATATAAAAGAAATGAAAATTAATATTCTTTTAGAAA
65 AAAAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATTAAAATTAATATTCTTTTAGAAA
*
21431955 GAATAC
130 GAATAT
21431961 AATT
1 AATT
21431965 CCTTTTTCTA
Statistics
Matches: 253, Mismatches: 20, Indels: 11
0.89 0.07 0.04
Matches are distributed among these distances:
135 62 0.25
136 4 0.02
137 4 0.02
138 183 0.72
ACGTcount: A:0.46, C:0.06, G:0.07, T:0.41
Consensus pattern (135 bp):
AATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTATGAATTTATTAATAA
AAAATTATATTAATTAATTTCAGTCAAAATATAAAAGACATTAAAATTAATATTCTTTTAGAAAG
AATAT
Found at i:21432086 original size:75 final size:75
Alignment explanation
Indices: 21431940--21432087 Score: 235
Period size: 75 Copynumber: 2.0 Consensus size: 75
21431930 ATGAAAATTA
*
21431940 ATATTCTTTTAGAAAGAATACAATTCCTTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGG
1 ATATTCTTTTAGAAAGAATACAATTCCTTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGA
21432005 GAATAATCAT
66 GAATAATCAT
* * *
21432015 ATATTCTTTTGGAAAGAATATAATTCCTTTTTCTAACTTTCCATTTG-CTTTCTCTATTAATAAT
1 ATATTCTTTTAGAAAGAATACAATTCCTTTTTCTAACTTTCCATTTGTC-TTCTCTATTAATAAG
*
21432079 AGCATAATC
65 AGAATAATC
21432088 CTGATTTTCC
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
74 1 0.01
75 66 0.99
ACGTcount: A:0.31, C:0.16, G:0.07, T:0.45
Consensus pattern (75 bp):
ATATTCTTTTAGAAAGAATACAATTCCTTTTTCTAACTTTCCATTTGTCTTCTCTATTAATAAGA
GAATAATCAT
Found at i:21434555 original size:102 final size:102
Alignment explanation
Indices: 21434443--21434632 Score: 328
Period size: 102 Copynumber: 1.9 Consensus size: 102
21434433 AATAAAGGAC
21434443 TGAAAATGATCAAATTAAAGTTCAAGTACTAAA-TCAACAACTTATGCAAAAATACAAGGTCTAA
1 TGAAAATGATCAAATTAAAGTTCAAGTACTAAATTC-ACAACTTATGCAAAAATACAAGGTCTAA
* *
21434507 TAGCAAAAATTGACCTATTTTATTATTGGGTATGGGAA
65 TAGCAAAAATTAACCTATGTTATTATTGGGTATGGGAA
*
21434545 TGAAAATGATCAAATTAAAGTTCAGGTACTAAATTCACAACTTATGCAAAAATACAAGGTCTAAT
1 TGAAAATGATCAAATTAAAGTTCAAGTACTAAATTCACAACTTATGCAAAAATACAAGGTCTAAT
*
21434610 AGCAAAATTTAACCTATGTTATT
66 AGCAAAAATTAACCTATGTTATT
21434633 TTATTATTGG
Statistics
Matches: 83, Mismatches: 4, Indels: 2
0.93 0.04 0.02
Matches are distributed among these distances:
102 81 0.98
103 2 0.02
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.30
Consensus pattern (102 bp):
TGAAAATGATCAAATTAAAGTTCAAGTACTAAATTCACAACTTATGCAAAAATACAAGGTCTAAT
AGCAAAAATTAACCTATGTTATTATTGGGTATGGGAA
Found at i:21440048 original size:266 final size:266
Alignment explanation
Indices: 21439544--21440061 Score: 876
Period size: 266 Copynumber: 1.9 Consensus size: 266
21439534 GTCTTGCTGC
*
21439544 TGATCAGTGAGTGAAGAATCCATTTTCTCGTGCAAGAAAAGGTTCTAATCTCCCACCGAGTTTCA
1 TGATCAGTGAGTGAAGAATCCATTTTCTCGTGCAAGAAAAGGTTCTAAGCTCCCACCGAGTTTCA
* *
21439609 ACTACTTTGCACGAACAAGCGCTGCTTATATAGTAAATCAATGATAACTTTTTTGTGGTCAGCAA
66 ACTACTTTGCACAAACAAGCGCTGCTTATATAGTAAATCAATGATAACTTGTTTGTGGTCAGCAA
* *
21439674 CAAGTCAAAAGTTCATAGCACAAATCCTTGGCGGCCAGGGTCAAGGTCACGTACTTACATGGTTT
131 CAAGTCAAAAGTTCACAGCACAAATCCTTGGCGGCCAGGGCCAAGGTCACGTACTTACATGGTTT
* *
21439739 TCTATCACCATCAACACAATAACTTCGCTTTTTTACCTTAATATTATAAAAA-AAATCTGAAATG
196 TCTATCACCACCAACACAATAACTTCGCCTTTTTACCTTAATATTATAAAAACAAATCTGAAATG
21439803 GGGTTT
261 GGGTTT
21439809 TGATCAGTGAGTGAAGAATCCATTTTCTCGTGCAAGAAAAGGTTCTAAGCTCCCACCGAGTTTCA
1 TGATCAGTGAGTGAAGAATCCATTTTCTCGTGCAAGAAAAGGTTCTAAGCTCCCACCGAGTTTCA
* * * *
21439874 ACTACTTTGCACAAACAAGGGCTGCTTATATGGTAAATCAATGATTGACTTGTTTGTGGTGAGCA
66 ACTACTTTGCACAAACAAGCGCTGCTTATATAGTAAATCAATGA-TAACTTGTTTGTGGTCAGCA
* * * *
21439939 ACAAGTCAAAAGTTGACAGCGCAAATCCTTGGTGGCCAGGGCCAAGGTTACGTACTTACATGGTT
130 ACAAGTCAAAAGTTCACAGCACAAATCCTTGGCGGCCAGGGCCAAGGTCACGTACTTACATGGTT
*
21440004 TTCTATCACCACCAACACAATAACTTCGCCTTTTTACTTTAATATTATAAAAACAAAT
195 TTCTATCACCACCAACACAATAACTTCGCCTTTTTACCTTAATATTATAAAAACAAAT
21440062 TAATTCTGAA
Statistics
Matches: 235, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
265 105 0.45
266 126 0.54
267 4 0.02
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (266 bp):
TGATCAGTGAGTGAAGAATCCATTTTCTCGTGCAAGAAAAGGTTCTAAGCTCCCACCGAGTTTCA
ACTACTTTGCACAAACAAGCGCTGCTTATATAGTAAATCAATGATAACTTGTTTGTGGTCAGCAA
CAAGTCAAAAGTTCACAGCACAAATCCTTGGCGGCCAGGGCCAAGGTCACGTACTTACATGGTTT
TCTATCACCACCAACACAATAACTTCGCCTTTTTACCTTAATATTATAAAAACAAATCTGAAATG
GGGTTT
Found at i:21451747 original size:17 final size:17
Alignment explanation
Indices: 21451695--21451748 Score: 65
Period size: 17 Copynumber: 3.2 Consensus size: 17
21451685 TCTAATTAAT
* *
21451695 CATTAGGGATCTTCTAG
1 CATTAGGGATCATCTTG
**
21451712 CATTAGGGAT-AAATTG
1 CATTAGGGATCATCTTG
21451728 CATTAGGGATCATCTTG
1 CATTAGGGATCATCTTG
21451745 CATT
1 CATT
21451749 TAGTTAATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
16 12 0.40
17 18 0.60
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (17 bp):
CATTAGGGATCATCTTG
Found at i:21466248 original size:27 final size:27
Alignment explanation
Indices: 21466218--21466396 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
21466208 ATATTAAGTC
* *
21466218 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
21466245 CGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
21466273 CGCACACTTAGTGCTACGTAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
** ** *
21466300 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
** **
21466327 CGCACACTTAGTGC-ATCATTTTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* ** *
21466354 CGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
21466381 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
21466397 TACAATTTAC
Statistics
Matches: 129, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:21466357 original size:54 final size:54
Alignment explanation
Indices: 21466218--21466396 Score: 216
Period size: 54 Copynumber: 3.3 Consensus size: 54
21466208 ATATTAAGTC
* * * **
21466218 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCCACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAA-T
* * *
21466273 CGCACACTTAGTGCTACGTAGTCAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
** ** *
21466327 CGCACACTTAGTGC-ATCATTTTCATTTCGCACACTTAGTGCAACATGGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
21466381 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
21466397 TACAATTTAC
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
53 1 0.01
54 59 0.56
55 46 0.43
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCCACATGGTCAAAT
Found at i:21468713 original size:18 final size:19
Alignment explanation
Indices: 21468690--21468726 Score: 67
Period size: 18 Copynumber: 2.0 Consensus size: 19
21468680 CTTGAAAATT
21468690 ATATTATGTGA-TGTGATG
1 ATATTATGTGATTGTGATG
21468708 ATATTATGTGATTGTGATG
1 ATATTATGTGATTGTGATG
21468727 TTTGTGCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (19 bp):
ATATTATGTGATTGTGATG
Found at i:21468995 original size:22 final size:22
Alignment explanation
Indices: 21468967--21469018 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
21468957 AGGAGGAAGA
21468967 TATGTGG-CAGTTTATCTGCAAT
1 TATGTGGTC-GTTTATCTGCAAT
*
21468989 TATGTGGTCGTTTATCTGTAAT
1 TATGTGGTCGTTTATCTGCAAT
*
21469011 TATATGGT
1 TATGTGGT
21469019 GACTTGTCTA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
22 26 0.96
23 1 0.04
ACGTcount: A:0.21, C:0.10, G:0.23, T:0.46
Consensus pattern (22 bp):
TATGTGGTCGTTTATCTGCAAT
Found at i:21472784 original size:20 final size:20
Alignment explanation
Indices: 21472759--21472799 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
21472749 TCATCCCTCA
21472759 TTTCATAATCATT-TTTCATT
1 TTTCAT-ATCATTCTTTCATT
*
21472779 TTTCATTTCATTCTTTCATT
1 TTTCATATCATTCTTTCATT
21472799 T
1 T
21472800 GCACCTTTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 5 0.26
20 14 0.74
ACGTcount: A:0.20, C:0.17, G:0.00, T:0.63
Consensus pattern (20 bp):
TTTCATATCATTCTTTCATT
Found at i:21478405 original size:20 final size:21
Alignment explanation
Indices: 21478375--21478413 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
21478365 TTGTATACAC
21478375 TTTGTTGCCCTTGCTTGCATA
1 TTTGTTGCCCTTGCTTGCATA
*
21478396 TTTG-TGCCCTTGTTTGCA
1 TTTGTTGCCCTTGCTTGCA
21478414 CTTCGGTGCC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.08, C:0.23, G:0.21, T:0.49
Consensus pattern (21 bp):
TTTGTTGCCCTTGCTTGCATA
Found at i:21478422 original size:20 final size:20
Alignment explanation
Indices: 21478348--21478434 Score: 59
Period size: 20 Copynumber: 4.3 Consensus size: 20
21478338 TTGTACAGGA
* *
21478348 TTTGAACTTCGGTGCCTTTG
1 TTTGCACTTCGGTGCCCTTG
* * * *
21478368 TATACACTTTGTTGCCCTTG
1 TTTGCACTTCGGTGCCCTTG
* **
21478388 CTTGCA-TATTTGTGCCCTTG
1 TTTGCACT-TCGGTGCCCTTG
*
21478408 TTTGCACTTCGGTGCCCCTG
1 TTTGCACTTCGGTGCCCTTG
21478428 TTATGCA
1 TT-TGCA
21478435 TCTATGATGC
Statistics
Matches: 49, Mismatches: 15, Indels: 5
0.71 0.22 0.07
Matches are distributed among these distances:
19 1 0.02
20 43 0.88
21 5 0.10
ACGTcount: A:0.11, C:0.25, G:0.21, T:0.43
Consensus pattern (20 bp):
TTTGCACTTCGGTGCCCTTG
Found at i:21480975 original size:23 final size:21
Alignment explanation
Indices: 21480949--21480990 Score: 66
Period size: 23 Copynumber: 1.9 Consensus size: 21
21480939 AATGCAATAT
21480949 TAAAAATGCTAACTAAAATGTCC
1 TAAAAATGC-AAC-AAAATGTCC
21480972 TAAAAATGCAACAAAATGT
1 TAAAAATGCAACAAAATGT
21480991 TACTTAAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 7 0.37
22 3 0.16
23 9 0.47
ACGTcount: A:0.52, C:0.14, G:0.10, T:0.24
Consensus pattern (21 bp):
TAAAAATGCAACAAAATGTCC
Found at i:21489841 original size:20 final size:20
Alignment explanation
Indices: 21489818--21489864 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
21489808 GGGTTAAGAT
*
21489818 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
21489838 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
21489858 TGAGCTG
1 TGAGCTG
21489865 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:21491588 original size:48 final size:48
Alignment explanation
Indices: 21491533--21491638 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
21491523 TTGTCTTTTC
*
21491533 TTTCTTTTTCAATTT-TCTCT-TTTTCCTCACA-CTTTTGTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTT--TCACATCCTTT-TTCAATCTCAA
* *
21491581 TTTCTTTTTCGATTTCTTTCTCTTTTTCACATCCTTTTTCAATCTCAA
1 TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
21491629 TTTCTTTTTC
1 TTTCTTTTTC
21491639 CATGACACTC
Statistics
Matches: 52, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
48 40 0.77
49 8 0.15
50 4 0.08
ACGTcount: A:0.14, C:0.25, G:0.02, T:0.59
Consensus pattern (48 bp):
TTTCTTTTTCAATTTCTCTCTCTTTTTCACATCCTTTTTCAATCTCAA
Found at i:21494285 original size:20 final size:20
Alignment explanation
Indices: 21494262--21494308 Score: 67
Period size: 20 Copynumber: 2.4 Consensus size: 20
21494252 GGGTTAAGAT
*
21494262 TGAGCTGAATTGAGCTTGAG
1 TGAGCTGAATTGAGCTCGAG
* *
21494282 TGAGTTGACTTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
21494302 TGAGCTG
1 TGAGCTG
21494309 GAAACGAGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.21, C:0.13, G:0.36, T:0.30
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:21500374 original size:15 final size:15
Alignment explanation
Indices: 21500339--21500377 Score: 60
Period size: 15 Copynumber: 2.6 Consensus size: 15
21500329 ACATTTAATT
21500339 TTATTAATTTTAAAA
1 TTATTAATTTTAAAA
**
21500354 AAATTAATTTTAAAA
1 TTATTAATTTTAAAA
21500369 TTATTAATT
1 TTATTAATT
21500378 GTTATTGTAT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (15 bp):
TTATTAATTTTAAAA
Found at i:21511454 original size:33 final size:34
Alignment explanation
Indices: 21511403--21511477 Score: 125
Period size: 33 Copynumber: 2.2 Consensus size: 34
21511393 AGATTTAAAC
21511403 AAATTAATTACTAACACTTATTTAAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
21511437 AAATTAATT-CTAACACTTATTTGAGCTGAACTA
1 AAATTAATTACTAACACTTATTTAAGCTGAACTA
*
21511470 AATTTAAT
1 AAATTAAT
21511478 AAACTAACTC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
33 30 0.77
34 9 0.23
ACGTcount: A:0.43, C:0.13, G:0.07, T:0.37
Consensus pattern (34 bp):
AAATTAATTACTAACACTTATTTAAGCTGAACTA
Found at i:21513257 original size:18 final size:18
Alignment explanation
Indices: 21513234--21513270 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
21513224 TTTTTGCTCT
21513234 TTTTTC-ATTCTCTTTTTC
1 TTTTTCGATT-TCTTTTTC
21513252 TTTTTCGATTTCTTTTTC
1 TTTTTCGATTTCTTTTTC
21513270 T
1 T
21513271 GTCTTCCTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 15 0.83
19 3 0.17
ACGTcount: A:0.05, C:0.19, G:0.03, T:0.73
Consensus pattern (18 bp):
TTTTTCGATTTCTTTTTC
Found at i:21527427 original size:45 final size:45
Alignment explanation
Indices: 21527365--21527535 Score: 227
Period size: 45 Copynumber: 3.8 Consensus size: 45
21527355 GGTGGGTCAA
*
21527365 CACATAGC-ACCACCTTTATAATCAATTATATTCGGTGGAATCAG
1 CACATAGCAACCACCTTTATAATCAATGATATTCGGTGGAATCAG
* * *
21527409 CACATAGCAACCACCTTTATAATAAATGATTTTCGGTGGAGTCAG
1 CACATAGCAACCACCTTTATAATCAATGATATTCGGTGGAATCAG
* ** * * *
21527454 CACATGGCAACCACCTTTATTTTCAATGATATCCGATGGAATCAA
1 CACATAGCAACCACCTTTATAATCAATGATATTCGGTGGAATCAG
* *
21527499 CACATAGCAACCACTTTTATAATCAATGATACTCGGT
1 CACATAGCAACCACCTTTATAATCAATGATATTCGGT
21527536 ACACGTAGTA
Statistics
Matches: 106, Mismatches: 20, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
44 8 0.08
45 98 0.92
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (45 bp):
CACATAGCAACCACCTTTATAATCAATGATATTCGGTGGAATCAG
Found at i:21530960 original size:25 final size:25
Alignment explanation
Indices: 21530926--21530975 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
21530916 CATCACCTAC
21530926 ACCTAGTTTTACCTATCCTTTTTTT
1 ACCTAGTTTTACCTATCCTTTTTTT
21530951 ACCTAGTTTTACCTATCCTTTTTTT
1 ACCTAGTTTTACCTATCCTTTTTTT
21530976 CTTTTTCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.16, C:0.24, G:0.04, T:0.56
Consensus pattern (25 bp):
ACCTAGTTTTACCTATCCTTTTTTT
Found at i:21537676 original size:36 final size:36
Alignment explanation
Indices: 21537629--21537722 Score: 161
Period size: 36 Copynumber: 2.6 Consensus size: 36
21537619 TTTTTATGTA
*
21537629 TGATTCCCATGTTAAGCATGCCCTAATTTCTGATTC
1 TGATTCGCATGTTAAGCATGCCCTAATTTCTGATTC
* *
21537665 TGATTCGCATGTTAAGCATGCCCTAATTTTTTATTC
1 TGATTCGCATGTTAAGCATGCCCTAATTTCTGATTC
21537701 TGATTCGCATGTTAAGCATGCC
1 TGATTCGCATGTTAAGCATGCC
21537723 GTAGTGATAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 55 1.00
ACGTcount: A:0.22, C:0.22, G:0.16, T:0.39
Consensus pattern (36 bp):
TGATTCGCATGTTAAGCATGCCCTAATTTCTGATTC
Found at i:21539012 original size:28 final size:28
Alignment explanation
Indices: 21538979--21539053 Score: 141
Period size: 28 Copynumber: 2.7 Consensus size: 28
21538969 TTACGAAAAT
21538979 TTAGATTCTGAAAACTATACTGTGAAAC
1 TTAGATTCTGAAAACTATACTGTGAAAC
*
21539007 TTAGATTCTGGAAACTATACTGTGAAAC
1 TTAGATTCTGAAAACTATACTGTGAAAC
21539035 TTAGATTCTGAAAACTATA
1 TTAGATTCTGAAAACTATA
21539054 GATACTGATA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.39, C:0.13, G:0.15, T:0.33
Consensus pattern (28 bp):
TTAGATTCTGAAAACTATACTGTGAAAC
Found at i:21539092 original size:14 final size:14
Alignment explanation
Indices: 21539046--21539092 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
21539036 TAGATTCTGA
21539046 AAACTATAGATACTG
1 AAACTATAGA-ACTG
*
21539061 ATACTATAGTAA-TG
1 AAACTATAG-AACTG
*
21539075 AAACTTTAGAACTG
1 AAACTATAGAACTG
21539089 AAAC
1 AAAC
21539093 ATTTTGAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
13 2 0.07
14 15 0.56
15 9 0.33
16 1 0.04
ACGTcount: A:0.47, C:0.13, G:0.13, T:0.28
Consensus pattern (14 bp):
AAACTATAGAACTG
Found at i:21540578 original size:41 final size:41
Alignment explanation
Indices: 21540489--21540668 Score: 175
Period size: 41 Copynumber: 4.4 Consensus size: 41
21540479 GTTTTAGAAG
* * * *
21540489 AATACCCCTAAATTGCACATACATG-CCTTTTTTGTACTTT
1 AATACCCCTGAATTGCACATACATGCCCCTATTTGTACTTC
** *
21540529 GGTACCCCTGAATTGCACATACGTGCCCCTATTTGTACTTC
1 AATACCCCTGAATTGCACATACATGCCCCTATTTGTACTTC
* * * *
21540570 AATGCCCCTGAATTGCTCATACATGCTCCTATTTGTACTTT
1 AATACCCCTGAATTGCACATACATGCCCCTATTTGTACTTC
* * * * ** *
21540611 AGTGCCCCTGTATTGCACATACGTGCCTTTCTTTGTACTTC
1 AATACCCCTGAATTGCACATACATGCCCCTATTTGTACTTC
*
21540652 GATACCCCTGAA-TGCAC
1 AATACCCCTGAATTGCAC
21540669 GTTTGTACCC
Statistics
Matches: 112, Mismatches: 27, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
40 26 0.23
41 86 0.77
ACGTcount: A:0.22, C:0.29, G:0.14, T:0.36
Consensus pattern (41 bp):
AATACCCCTGAATTGCACATACATGCCCCTATTTGTACTTC
Found at i:21540629 original size:82 final size:81
Alignment explanation
Indices: 21540489--21540668 Score: 236
Period size: 82 Copynumber: 2.2 Consensus size: 81
21540479 GTTTTAGAAG
* * * *
21540489 AATACCCCTAAATTGCACATACATGCCTTTTTTGTACTTTGGTACCCCTGAATTGCACATACGTG
1 AATACCCCTGAATTGCACATACATGCCCTATTTGTACTTTAGTACCCCTGAATTGCACATACGTG
21540554 CCCCTATTTGTACTTC
66 CCCCTATTTGTACTTC
* * * *
21540570 AATGCCCCTGAATTGCTCATACATGCTCCTATTTGTACTTTAGTGCCCCTGTATTGCACATACGT
1 AATACCCCTGAATTGCACATACATGC-CCTATTTGTACTTTAGTACCCCTGAATTGCACATACGT
** *
21540635 GCCTTTCTTTGTACTTC
65 GCCCCTATTTGTACTTC
*
21540652 GATACCCCTGAA-TGCAC
1 AATACCCCTGAATTGCAC
21540669 GTTTGTACCC
Statistics
Matches: 84, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 27 0.32
82 57 0.68
ACGTcount: A:0.22, C:0.29, G:0.14, T:0.36
Consensus pattern (81 bp):
AATACCCCTGAATTGCACATACATGCCCTATTTGTACTTTAGTACCCCTGAATTGCACATACGTG
CCCCTATTTGTACTTC
Found at i:21540636 original size:21 final size:21
Alignment explanation
Indices: 21540533--21540637 Score: 56
Period size: 21 Copynumber: 5.1 Consensus size: 21
21540523 TACTTTGGTA
*
21540533 CCCCTGAATTGCACATACGTG
1 CCCCTGTATTGCACATACGTG
* * * *
21540554 CCCCTAT-TTGTAC-TTCAATG
1 CCCCTGTATTGCACATAC-GTG
* * *
21540574 CCCCTGAATTGCTCATACATG
1 CCCCTGTATTGCACATACGTG
* * * *
21540595 CTCCTAT-TTGTACTTTA-GTG
1 CCCCTGTATTGCAC-ATACGTG
21540615 CCCCTGTATTGCACATACGTG
1 CCCCTGTATTGCACATACGTG
21540636 CC
1 CC
21540638 TTTCTTTGTA
Statistics
Matches: 57, Mismatches: 21, Indels: 12
0.63 0.23 0.13
Matches are distributed among these distances:
19 2 0.04
20 25 0.44
21 28 0.49
22 2 0.04
ACGTcount: A:0.20, C:0.31, G:0.15, T:0.33
Consensus pattern (21 bp):
CCCCTGTATTGCACATACGTG
Found at i:21540758 original size:33 final size:33
Alignment explanation
Indices: 21540721--21540788 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
21540711 TATATGAATC
21540721 ATAATCAATTATTGTTACATTAAATGATATACT
1 ATAATCAATTATTGTTACATTAAATGATATACT
21540754 ATAATCAATTATTGTTACATTAAATGATATACT
1 ATAATCAATTATTGTTACATTAAATGATATACT
21540787 AT
1 AT
21540789 GTTCTTACTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.43
Consensus pattern (33 bp):
ATAATCAATTATTGTTACATTAAATGATATACT
Found at i:21564266 original size:45 final size:45
Alignment explanation
Indices: 21564202--21564295 Score: 152
Period size: 45 Copynumber: 2.1 Consensus size: 45
21564192 AACAGATACT
* *
21564202 CGGTGGATTCAACACATAGCAACCACCTTATTAATCAATGATGTC
1 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
* *
21564247 CGGTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTT
1 CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
21564292 CGGT
1 CGGT
21564296 TCACGTAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.26
Consensus pattern (45 bp):
CGGTGGAATCAACACATAGCAACCACCTTACTAATCAATGATGTC
Found at i:21564411 original size:49 final size:50
Alignment explanation
Indices: 21564297--21564435 Score: 201
Period size: 49 Copynumber: 2.8 Consensus size: 50
21564287 ATGTTCGGTT
*
21564297 CACGTAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATTCGGTA
1 CACGTAGTAGCCTGCACATAGTACTACACATGTGACCA-TACCATTCGATA
* * *
21564348 CGCATAGTAGCCTGCACATAGTACTACACAT-TCGACC-TATCATTCGATA
1 CACGTAGTAGCCTGCACATAGTACTACACATGT-GACCATACCATTCGATA
*
21564397 CACGTTGTAGCCTGCACATAGTACTACACATGTGACCAT
1 CACGTAGTAGCCTGCACATAGTACTACACATGTGACCAT
21564436 CACTTTCACT
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
49 42 0.54
50 3 0.04
51 33 0.42
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (50 bp):
CACGTAGTAGCCTGCACATAGTACTACACATGTGACCATACCATTCGATA
Found at i:21565788 original size:14 final size:14
Alignment explanation
Indices: 21565766--21565806 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
21565756 TCGTATGAAC
21565766 CATATCTTTAAAAT
1 CATATCTTTAAAAT
*
21565780 CATAACTTTAAAAT
1 CATATCTTTAAAAT
*
21565794 -ATATCTTGAAAAT
1 CATATCTTTAAAAT
21565807 AGAGTCTCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
13 11 0.46
14 13 0.54
ACGTcount: A:0.46, C:0.12, G:0.02, T:0.39
Consensus pattern (14 bp):
CATATCTTTAAAAT
Found at i:21565807 original size:13 final size:13
Alignment explanation
Indices: 21565767--21565807 Score: 55
Period size: 13 Copynumber: 3.1 Consensus size: 13
21565757 CGTATGAACC
21565767 ATATCTTTAAAAT
1 ATATCTTTAAAAT
*
21565780 CATAACTTTAAAAT
1 -ATATCTTTAAAAT
*
21565794 ATATCTTGAAAAT
1 ATATCTTTAAAAT
21565807 A
1 A
21565808 GAGTCTCAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.49, C:0.10, G:0.02, T:0.39
Consensus pattern (13 bp):
ATATCTTTAAAAT
Found at i:21567368 original size:49 final size:51
Alignment explanation
Indices: 21567309--21567421 Score: 151
Period size: 51 Copynumber: 2.3 Consensus size: 51
21567299 TCAAGTGTGG
* *
21567309 ATGTGAAGGCCACTTTGAGAAG-AGATAG-TTT-GATCACAAGTGTGGTACT
1 ATGTGAAGGCCACTTTGAGAAGAAGATAGCTTTGGCT-ACAAGGGTGGTACT
* *
21567358 ATGTGAAGGCCACTTTGTGAAGAAGGTAGCTTTGGCTACAAGGGTGGTACT
1 ATGTGAAGGCCACTTTGAGAAGAAGATAGCTTTGGCTACAAGGGTGGTACT
*
21567409 ATGTGCAGGCCAC
1 ATGTGAAGGCCAC
21567422 GAGGTATCCG
Statistics
Matches: 56, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
49 21 0.38
50 5 0.09
51 28 0.50
52 2 0.04
ACGTcount: A:0.27, C:0.15, G:0.31, T:0.27
Consensus pattern (51 bp):
ATGTGAAGGCCACTTTGAGAAGAAGATAGCTTTGGCTACAAGGGTGGTACT
Found at i:21569131 original size:26 final size:26
Alignment explanation
Indices: 21569087--21569176 Score: 92
Period size: 26 Copynumber: 3.4 Consensus size: 26
21569077 TCAATCTTTG
*
21569087 ACTGGCGAACCCCAATTCACAACTCA
1 ACTGGCGAACCCCAGTTCACAACTCA
* *
21569113 ACTGGCGAACACCAGTTCACCAA-ACA
1 ACTGGCGAACCCCAGTTCA-CAACTCA
* * *
21569139 GACTGGCGAACCCCAGTTCGCAGCTTA
1 -ACTGGCGAACCCCAGTTCACAACTCA
*
21569166 CCTGGCGAACC
1 ACTGGCGAACC
21569177 TTAGCTTGTC
Statistics
Matches: 52, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
26 31 0.60
27 21 0.40
ACGTcount: A:0.30, C:0.37, G:0.19, T:0.14
Consensus pattern (26 bp):
ACTGGCGAACCCCAGTTCACAACTCA
Found at i:21569148 original size:27 final size:27
Alignment explanation
Indices: 21569086--21569157 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
21569076 CTCAATCTTT
* *
21569086 GACTGGCGAACCCCAATTCACAACTCA
1 GACTGGCGAACCCCAGTTCACAACACA
*
21569113 -ACTGGCGAACACCAGTTCACCAA-ACA
1 GACTGGCGAACCCCAGTTCA-CAACACA
21569139 GACTGGCGAACCCCAGTTC
1 GACTGGCGAACCCCAGTTC
21569158 GCAGCTTACC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
26 19 0.49
27 20 0.51
ACGTcount: A:0.32, C:0.36, G:0.18, T:0.14
Consensus pattern (27 bp):
GACTGGCGAACCCCAGTTCACAACACA
Found at i:21572049 original size:29 final size:29
Alignment explanation
Indices: 21572016--21572087 Score: 99
Period size: 29 Copynumber: 2.5 Consensus size: 29
21572006 CTTTAATAGC
*
21572016 GATAGCCACAAAGGCATCATTTTGACAAA
1 GATAGCCACAAAGGAATCATTTTGACAAA
* * *
21572045 TATAGCCACAAAGGAATCCTTTTGACAGA
1 GATAGCCACAAAGGAATCATTTTGACAAA
*
21572074 GATCGCCACAAAGG
1 GATAGCCACAAAGG
21572088 TTTTCTTATA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 37 1.00
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.19
Consensus pattern (29 bp):
GATAGCCACAAAGGAATCATTTTGACAAA
Found at i:21594558 original size:18 final size:18
Alignment explanation
Indices: 21594537--21594583 Score: 94
Period size: 18 Copynumber: 2.6 Consensus size: 18
21594527 TCTTGTCGAA
21594537 AAAATAATTAATTTTTAC
1 AAAATAATTAATTTTTAC
21594555 AAAATAATTAATTTTTAC
1 AAAATAATTAATTTTTAC
21594573 AAAATAATTAA
1 AAAATAATTAA
21594584 AGTGCACTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.55, C:0.04, G:0.00, T:0.40
Consensus pattern (18 bp):
AAAATAATTAATTTTTAC
Found at i:21609583 original size:53 final size:54
Alignment explanation
Indices: 21609511--21609639 Score: 188
Period size: 53 Copynumber: 2.4 Consensus size: 54
21609501 AGCCACACGC
* *
21609511 CCTTGTGCCAGGCCGTGTAACTCTCAAAATGGCCTCACAC-ACCATGTGCCAGG
1 CCTTGTGCTAGGCCGTGTAACTCTCAAAATGGCCTCACACGACCATGTGCCAAG
* * *
21609564 CCTTGTGCTAGGCCGTGTAACTCTCGAAATTGCCTCACACGCCCATGTGCCAAG
1 CCTTGTGCTAGGCCGTGTAACTCTCAAAATGGCCTCACACGACCATGTGCCAAG
* *
21609618 CCTTGTGCTAAGCCATGTAACT
1 CCTTGTGCTAGGCCGTGTAACT
21609640 GCCTGACTTT
Statistics
Matches: 68, Mismatches: 7, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
53 37 0.54
54 31 0.46
ACGTcount: A:0.22, C:0.33, G:0.22, T:0.24
Consensus pattern (54 bp):
CCTTGTGCTAGGCCGTGTAACTCTCAAAATGGCCTCACACGACCATGTGCCAAG
Found at i:21610800 original size:26 final size:26
Alignment explanation
Indices: 21610764--21610813 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
21610754 CCTTTACATA
21610764 TATGCTCACACAAGCTATGAAATAAG
1 TATGCTCACACAAGCTATGAAATAAG
*
21610790 TATGCTCACACGAGCTATGAAATA
1 TATGCTCACACAAGCTATGAAATA
21610814 GGCCTGCTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.40, C:0.20, G:0.16, T:0.24
Consensus pattern (26 bp):
TATGCTCACACAAGCTATGAAATAAG
Found at i:21610821 original size:26 final size:26
Alignment explanation
Indices: 21610765--21610825 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
21610755 CTTTACATAT
*
21610765 ATGCTCACACAAGCTATGAAATAAGT
1 ATGCTCACACAAGCTATGAAATAAGC
* *
21610791 ATGCTCACACGAGCTATGAAATAGGC
1 ATGCTCACACAAGCTATGAAATAAGC
*
21610817 CTGCTCACA
1 ATGCTCACA
21610826 TGAGTTGTGG
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.36, C:0.25, G:0.18, T:0.21
Consensus pattern (26 bp):
ATGCTCACACAAGCTATGAAATAAGC
Found at i:21628226 original size:11 final size:11
Alignment explanation
Indices: 21628209--21628238 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
21628199 AATCAAGTAA
21628209 CCGATCATCTG
1 CCGATCATCTG
*
21628220 TCGATCATCTG
1 CCGATCATCTG
21628231 CCGATCAT
1 CCGATCAT
21628239 TTCTAGATGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.20, C:0.33, G:0.17, T:0.30
Consensus pattern (11 bp):
CCGATCATCTG
Found at i:21629539 original size:17 final size:17
Alignment explanation
Indices: 21629514--21629548 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
21629504 ACTCAATAAA
*
21629514 ATTTTTTTGCCTACACC
1 ATTTCTTTGCCTACACC
21629531 ATTTCTTTGCCTACACC
1 ATTTCTTTGCCTACACC
21629548 A
1 A
21629549 GTTATATTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.20, C:0.31, G:0.06, T:0.43
Consensus pattern (17 bp):
ATTTCTTTGCCTACACC
Found at i:21634150 original size:27 final size:27
Alignment explanation
Indices: 21634108--21634263 Score: 172
Period size: 27 Copynumber: 5.7 Consensus size: 27
21634098 GGCTTAAGCC
* *
21634108 GTAAAATTACCAAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGAAGG
*
21634135 GTAAAATTACCGAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCTCGAAGG
* *
21634162 GTAAAATTATCGAAATACCCT-TAAGG
1 GTAAAATTACCGAAATACCCTCGAAGG
* * *
21634188 GTAAAAATTACCAAAATA-CCTCTAAAAG
1 GT-AAAATTACCGAAATACCCTC-GAAGG
* *
21634216 GTAATAATTACTGAAATATCCTCGAAGG
1 GTAA-AATTACCGAAATACCCTCGAAGG
*
21634244 GTAAAATTATCGAAATACCC
1 GTAAAATTACCGAAATACCC
21634264 CCAAAAGGTA
Statistics
Matches: 109, Mismatches: 15, Indels: 10
0.81 0.11 0.07
Matches are distributed among these distances:
26 8 0.07
27 74 0.68
28 23 0.21
29 4 0.04
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCTCGAAGG
Found at i:21634251 original size:82 final size:81
Alignment explanation
Indices: 21634110--21634263 Score: 229
Period size: 82 Copynumber: 1.9 Consensus size: 81
21634100 CTTAAGCCGT
* ** *
21634110 AAAATTACCAAAATACCCTCGATGGGTAAAATTACCGAAATACCCTCGATGGGTAAAATTATCGA
1 AAAATTACCAAAATACCCTCAAAAGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGA
21634175 AATACCCTTAAGGGTA
66 AATACCCTTAAGGGTA
* *
21634191 AAAATTACCAAAATA-CCTCTAAAAGGTAATAATTACTGAAATATCCTCGAAGGGTAAAATTATC
1 AAAATTACCAAAATACCCTC-AAAAGGTAA-AATTACCGAAATACCCTCGAAGGGTAAAATTATC
21634255 GAAATACCC
64 GAAATACCC
21634264 CCAAAAGGTA
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
80 4 0.06
81 21 0.32
82 40 0.62
ACGTcount: A:0.44, C:0.19, G:0.14, T:0.24
Consensus pattern (81 bp):
AAAATTACCAAAATACCCTCAAAAGGTAAAATTACCGAAATACCCTCGAAGGGTAAAATTATCGA
AATACCCTTAAGGGTA
Found at i:21634273 original size:27 final size:27
Alignment explanation
Indices: 21634108--21634291 Score: 127
Period size: 27 Copynumber: 6.8 Consensus size: 27
21634098 GGCTTAAGCC
* * * *
21634108 GTAAAATTACCAAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCCCAAAGG
* * *
21634135 GTAAAATTACCGAAATACCCTCGATGG
1 GTAAAATTACCGAAATACCCCCAAAGG
* **
21634162 GTAAAATTATCGAAATA-CCCTTAAGG
1 GTAAAATTACCGAAATACCCCCAAAGG
* * * *
21634188 GTAAAAATTACCAAAATACCTCTAAAAG
1 GT-AAAATTACCGAAATACCCCCAAAGG
* * * *
21634216 GTAATAATTACTGAAATATCCTCGAAGG
1 GTAA-AATTACCGAAATACCCCCAAAGG
* *
21634244 GTAAAATTATCGAAATACCCCCAAAAG
1 GTAAAATTACCGAAATACCCCCAAAGG
* * **
21634271 GTAGAATGACCGTTATACCCC
1 GTAAAATTACCGAAATACCCC
21634292 TAGGAGAATA
Statistics
Matches: 124, Mismatches: 30, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
26 7 0.06
27 90 0.73
28 27 0.22
ACGTcount: A:0.42, C:0.20, G:0.15, T:0.23
Consensus pattern (27 bp):
GTAAAATTACCGAAATACCCCCAAAGG
Found at i:21640172 original size:20 final size:20
Alignment explanation
Indices: 21640147--21640202 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
21640137 ACAGGATTTG
21640147 CACTTCGGTGCCCCTGTACA
1 CACTTCGGTGCCCCTGTACA
* * * *
21640167 CACTTCGGTGTCCTTGTTCG
1 CACTTCGGTGCCCCTGTACA
*
21640187 CACTACGGTGCCCCTG
1 CACTTCGGTGCCCCTG
21640203 GTTTCACATT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.11, C:0.38, G:0.23, T:0.29
Consensus pattern (20 bp):
CACTTCGGTGCCCCTGTACA
Found at i:21646736 original size:40 final size:40
Alignment explanation
Indices: 21646681--21646932 Score: 218
Period size: 40 Copynumber: 6.3 Consensus size: 40
21646671 AACTTGAACA
* * *
21646681 CACATACGTACCCCTGTTTGTACTACGGTACCCCTGAATG
1 CACATACGTGCCCCTGATTGTACTACGGTACCCCTAAATG
* * * * *
21646721 CACATATGTGCCCCTGATTATATTTCAGTACCCCTAAATG
1 CACATACGTGCCCCTGATTGTACTACGGTACCCCTAAATG
* * * * * *
21646761 CACATATGTG-TCCTAATTCTACTACGATACCCTTAAATG
1 CACATACGTGCCCCTGATTGTACTACGGTACCCCTAAATG
* * * * ** * *
21646800 GACATACGTGGCCCTAATTTTACTTTGATACCCCTAAACG
1 CACATACGTGCCCCTGATTGTACTACGGTACCCCTAAATG
** * * *
21646840 CACATACGTGCCTTTAATTGTACTACGGTACCCTTGAATG
1 CACATACGTGCCCCTGATTGTACTACGGTACCCCTAAATG
* * * *
21646880 CACATATGTGCCCCTGGTTGTACTTCGGTACCCCTGAATG
1 CACATACGTGCCCCTGATTGTACTACGGTACCCCTAAATG
21646920 CACATACGTGCCC
1 CACATACGTGCCC
21646933 TTGTTTGTGC
Statistics
Matches: 168, Mismatches: 43, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
39 29 0.17
40 139 0.83
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.30
Consensus pattern (40 bp):
CACATACGTGCCCCTGATTGTACTACGGTACCCCTAAATG
Found at i:21646885 original size:80 final size:78
Alignment explanation
Indices: 21646698--21646931 Score: 272
Period size: 80 Copynumber: 3.0 Consensus size: 78
21646688 GTACCCCTGT
* *
21646698 TTGTACTACGGTACCCCTGAATGCACATATGTGCCCCTGATTATA-TTTCAGTACCCCTAAATGC
1 TTGTACTACGGTACCCTTGAATGCACATATGTGCCCCTGATTATACTTTGA-TACCCCTAAATGC
*
21646762 ACATATGTGTCCTAA
65 ACATACGTG-CCTAA
* * * * * * * * *
21646777 TTCTACTACGATACCCTTAAATGGACATACGTGGCCCTAATTTTACTTTGATACCCCTAAACGCA
1 TTGTACTACGGTACCCTTGAATGCACATATGTGCCCCTGATTATACTTTGATACCCCTAAATGCA
21646842 CATACGTGCCTTTAA
66 CATACGTGCC--TAA
* * * * *
21646857 TTGTACTACGGTACCCTTGAATGCACATATGTGCCCCTGGTTGTACTTCGGTACCCCTGAATGCA
1 TTGTACTACGGTACCCTTGAATGCACATATGTGCCCCTGATTATACTTTGATACCCCTAAATGCA
21646922 CATACGTGCC
66 CATACGTGCC
21646932 CTTGTTTGTG
Statistics
Matches: 127, Mismatches: 25, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
78 2 0.02
79 56 0.44
80 69 0.54
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (78 bp):
TTGTACTACGGTACCCTTGAATGCACATATGTGCCCCTGATTATACTTTGATACCCCTAAATGCA
CATACGTGCCTAA
Found at i:21649958 original size:45 final size:45
Alignment explanation
Indices: 21649880--21650056 Score: 236
Period size: 45 Copynumber: 4.0 Consensus size: 45
21649870 AACAGTTACA
* *
21649880 CGGTGG-ATCAGCACATAGC-ACCACCCTCATAATCAA-GTATATT
1 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATG-ATATT
* * *
21649923 CGGTGGAATAAGCACATAGCAGCCACCTTTATAATCAATGATTTT
1 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATATT
* ** *
21649968 CGGTGGAGTCAGCACATAGCAACCACCTTTATTTTCAATGATATC
1 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATATT
21650013 CGGTGGAATCAGCACATAGCAACCACCTTTAT-ATCAATGATATT
1 CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATATT
21650057 TGTTCTATTC
Statistics
Matches: 116, Mismatches: 15, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
43 6 0.05
44 22 0.19
45 87 0.75
46 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (45 bp):
CGGTGGAATCAGCACATAGCAACCACCTTTATAATCAATGATATT
Found at i:21672873 original size:33 final size:33
Alignment explanation
Indices: 21672831--21672897 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
21672821 TTAGAGTATG
* *
21672831 CCCAAAAGATCAATCATGAGATGGTTGTAATAA
1 CCCAAAAGATAAATCATGAAATGGTTGTAATAA
21672864 CCCAAAAGATAAATCATGAAATGGTTGTAATAA
1 CCCAAAAGATAAATCATGAAATGGTTGTAATAA
21672897 C
1 C
21672898 ATACTTGATT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.45, C:0.15, G:0.16, T:0.24
Consensus pattern (33 bp):
CCCAAAAGATAAATCATGAAATGGTTGTAATAA
Found at i:21674913 original size:35 final size:34
Alignment explanation
Indices: 21674840--21674921 Score: 85
Period size: 35 Copynumber: 2.4 Consensus size: 34
21674830 ATGCGGTTCG
* *
21674840 TACCGCGGGGCTCTGCCCCCACACCCCTGGTCCA
1 TACCGCGGGGCTCCGCCCCCACACCCCTGCTCCA
* * *
21674874 TACCGCGGGGGCTCCGCCCCCTCACTCCTTGCT-CT
1 TACCGC-GGGGCTCCGCCCCCACAC-CCCTGCTCCA
21674909 TACCGCAGGGGCT
1 TACCGC-GGGGCT
21674922 ATAACTATTG
Statistics
Matches: 40, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
34 6 0.15
35 29 0.73
36 5 0.12
ACGTcount: A:0.10, C:0.46, G:0.26, T:0.18
Consensus pattern (34 bp):
TACCGCGGGGCTCCGCCCCCACACCCCTGCTCCA
Found at i:21674951 original size:12 final size:13
Alignment explanation
Indices: 21674927--21674955 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
21674917 GGGCTATAAC
21674927 TATTGCATTTATT
1 TATTGCATTTATT
21674940 TATTGC-TTTATT
1 TATTGCATTTATT
21674952 TATT
1 TATT
21674956 CATGTATGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.62
13 6 0.38
ACGTcount: A:0.21, C:0.07, G:0.07, T:0.66
Consensus pattern (13 bp):
TATTGCATTTATT
Found at i:21681354 original size:47 final size:47
Alignment explanation
Indices: 21681227--21681743 Score: 846
Period size: 47 Copynumber: 11.1 Consensus size: 47
21681217 GAAATGATAG
21681227 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
21681274 TAAGGCCTAAT-GCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
21681320 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
21681367 TAAGGCCTAAATGGCCGATGTGATGAATGTGAAAGTGTATAT-TGTGA
1 TAAGGCCT-AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
21681414 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
21681461 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG--TATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
21681506 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* *
21681553 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
21681600 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
21681647 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
21681693 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
21681740 TAAG
1 TAAG
21681744 TCCCGAAGGG
Statistics
Matches: 447, Mismatches: 17, Indels: 12
0.94 0.04 0.03
Matches are distributed among these distances:
45 44 0.10
46 118 0.26
47 252 0.56
48 33 0.07
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:21681453 original size:94 final size:94
Alignment explanation
Indices: 21681227--21681743 Score: 846
Period size: 93 Copynumber: 5.5 Consensus size: 94
21681217 GAAATGATAG
21681227 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT-GCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
*
21681291 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
* *
21681320 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAAATGGCCGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT-AATAGCCGA
21681385 TGTGATGAATGTGAAAGTGTATAT-TGTGA
65 TGTGATGAATGTGAAAGTGTATATATGTGA
*
21681414 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
21681479 GTGATGAATGTGAAAGTG--TATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
*
21681506 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
*
21681571 GTGATGAATGTGAAAGTGTATATATGTAA
66 GTGATGAATGTGAAAGTGTATATATGTGA
*
21681600 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
21681665 GTG-TGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
21681693 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
21681744 TCCCGAAGGG
Statistics
Matches: 402, Mismatches: 17, Indels: 10
0.94 0.04 0.02
Matches are distributed among these distances:
91 3 0.01
92 86 0.21
93 147 0.37
94 137 0.34
95 29 0.07
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:21681528 original size:22 final size:22
Alignment explanation
Indices: 21681456--21681528 Score: 58
Period size: 22 Copynumber: 3.3 Consensus size: 22
21681446 AGTGTATATG
21681456 TGTGATAAGGCCTAATAGCCGA
1 TGTGATAAGGCCTAATAGCCGA
* *** ***
21681478 TGTGATGAATGTGAAAGT-GTATA
1 TGTGAT-AAGGCCTAA-TAGCCGA
21681501 TGTGATAAGGCCTAATAGCCGA
1 TGTGATAAGGCCTAATAGCCGA
21681523 TGTGAT
1 TGTGAT
21681529 GAATGTGAAA
Statistics
Matches: 34, Mismatches: 14, Indels: 6
0.63 0.26 0.11
Matches are distributed among these distances:
21 1 0.03
22 19 0.56
23 13 0.38
24 1 0.03
ACGTcount: A:0.32, C:0.11, G:0.29, T:0.29
Consensus pattern (22 bp):
TGTGATAAGGCCTAATAGCCGA
Found at i:21681917 original size:37 final size:37
Alignment explanation
Indices: 21681861--21681939 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
21681851 CCGAGCTCTA
* * *
21681861 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
21681898 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
21681935 AAGAC
1 AAGAC
21681940 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:21694708 original size:22 final size:23
Alignment explanation
Indices: 21694683--21694731 Score: 66
Period size: 22 Copynumber: 2.2 Consensus size: 23
21694673 ATCAGCTTCT
21694683 TTAATAC-ACCTATTAAGACACA
1 TTAATACGACCTATTAAGACACA
* *
21694705 TTAA-ACGACTTATTAGGACACA
1 TTAATACGACCTATTAAGACACA
21694727 TTAAT
1 TTAAT
21694732 CATACCAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.43, C:0.18, G:0.08, T:0.31
Consensus pattern (23 bp):
TTAATACGACCTATTAAGACACA
Found at i:21703547 original size:42 final size:42
Alignment explanation
Indices: 21703501--21703582 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
21703491 ATACCAAATG
21703501 ATACGAACTTGCTTACGAGGTGTAATTGAGTCGTTAAATTAT
1 ATACGAACTTGCTTACGAGGTGTAATTGAGTCGTTAAATTAT
21703543 ATACGAACTTGCTTACGAGGTGTAATTGAGTCGTTAAATT
1 ATACGAACTTGCTTACGAGGTGTAATTGAGTCGTTAAATT
21703583 CTCGATCGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.30, C:0.12, G:0.22, T:0.35
Consensus pattern (42 bp):
ATACGAACTTGCTTACGAGGTGTAATTGAGTCGTTAAATTAT
Found at i:21705084 original size:39 final size:39
Alignment explanation
Indices: 21705031--21705105 Score: 116
Period size: 39 Copynumber: 1.9 Consensus size: 39
21705021 ACAATTGAAA
*
21705031 CACATATTAATGATGTTCAAACT-CAGACATAATTAATGT
1 CACATATTAATGATGTTCAAA-TGAAGACATAATTAATGT
*
21705070 CACATATTAGTGATGTTCAAATGAAGACATAATTAA
1 CACATATTAATGATGTTCAAATGAAGACATAATTAA
21705106 AACTCAAACT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 1 0.03
39 32 0.97
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (39 bp):
CACATATTAATGATGTTCAAATGAAGACATAATTAATGT
Found at i:21711127 original size:29 final size:29
Alignment explanation
Indices: 21711096--21711382 Score: 268
Period size: 29 Copynumber: 9.8 Consensus size: 29
21711086 GATGGTTGAA
**
21711096 ACCATCCCTTTTCATATTCGATGGTCAAA
1 ACCATCCCTTTTCATATTCGATGGTCATC
*
21711125 ACCATCCCTTTTCATTAATCGATGGTCATC
1 ACCATCCCTTTTCA-TATTCGATGGTCATC
* *
21711155 ACCATCCCTTTTCTTATTTGATGGTCATC
1 ACCATCCCTTTTCATATTCGATGGTCATC
* ** **
21711184 ACCATCCCTTTTCATAGTCGATACTCAAA
1 ACCATCCCTTTTCATATTCGATGGTCATC
* * * * *
21711213 ACTATCCATTTTCATATTTGAAGGTCGTC
1 ACCATCCCTTTTCATATTCGATGGTCATC
* *
21711242 ACCATCCCTTTTCATATTCGAGGGTCGTC
1 ACCATCCCTTTTCATATTCGATGGTCATC
* * **
21711271 ACCATCCCTTTGCATATTTGATGGTCAAA
1 ACCATCCCTTTTCATATTCGATGGTCATC
* * * *
21711300 ACCATTCTTTTTCATTAATCGATGGTCGTC
1 ACCATCCCTTTTCA-TATTCGATGGTCATC
* * * * *
21711330 ACCGTTCCTTTTCATATTTGATGGTCGTT
1 ACCATCCCTTTTCATATTCGATGGTCATC
*
21711359 ACCATCCCTTTTCATTAATCGATG
1 ACCATCCCTTTTCA-TATTCGATG
21711383 CTCGTCGATA
Statistics
Matches: 205, Mismatches: 50, Indels: 5
0.79 0.19 0.02
Matches are distributed among these distances:
29 151 0.74
30 54 0.26
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.39
Consensus pattern (29 bp):
ACCATCCCTTTTCATATTCGATGGTCATC
Found at i:21711356 original size:88 final size:88
Alignment explanation
Indices: 21711096--21711382 Score: 369
Period size: 88 Copynumber: 3.3 Consensus size: 88
21711086 GATGGTTGAA
* *
21711096 ACCATCCCTTTTCATATTCGATGGTCAAAACCATCCCTTTTCATTAATCGATGGTCATCACCATC
1 ACCATCCCTTTTCATATTCGATGGTCAAAACCATCCATTTTCATTAATCGATGGTCGTCACCATC
* *
21711161 CCTTTTCTTATTTGATGGTCATC
66 CCTTTTCATATTTGATGGTCGTC
* ** * * * *
21711184 ACCATCCCTTTTCATAGTCGATACTCAAAACTATCCATTTTCA-TATTTGAAGGTCGTCACCATC
1 ACCATCCCTTTTCATATTCGATGGTCAAAACCATCCATTTTCATTAATCGATGGTCGTCACCATC
* *
21711248 CCTTTTCATATTCGAGGGTCGTC
66 CCTTTTCATATTTGATGGTCGTC
* * * * * *
21711271 ACCATCCCTTTGCATATTTGATGGTCAAAACCATTCTTTTTCATTAATCGATGGTCGTCACCGTT
1 ACCATCCCTTTTCATATTCGATGGTCAAAACCATCCATTTTCATTAATCGATGGTCGTCACCATC
*
21711336 CCTTTTCATATTTGATGGTCGTT
66 CCTTTTCATATTTGATGGTCGTC
*
21711359 ACCATCCCTTTTCATTAATCGATG
1 ACCATCCCTTTTCA-TATTCGATG
21711383 CTCGTCGATA
Statistics
Matches: 165, Mismatches: 32, Indels: 3
0.82 0.16 0.01
Matches are distributed among these distances:
87 71 0.43
88 87 0.53
89 7 0.04
ACGTcount: A:0.23, C:0.26, G:0.12, T:0.39
Consensus pattern (88 bp):
ACCATCCCTTTTCATATTCGATGGTCAAAACCATCCATTTTCATTAATCGATGGTCGTCACCATC
CCTTTTCATATTTGATGGTCGTC
Found at i:21711388 original size:59 final size:59
Alignment explanation
Indices: 21711096--21711388 Score: 329
Period size: 59 Copynumber: 5.0 Consensus size: 59
21711086 GATGGTTGAA
* * *
21711096 ACCATCCCTTTTCATATTCGATGGTCAAAACCATCCCTTTTCATTAATCGATGGTCATC
1 ACCATCCCTTTTCATATTTGATGGTCATAACCATCCCTTTTCATTAATCGATGGTCGTC
* * * ** ***
21711155 ACCATCCCTTTTCTTATTTGATGGTCATCACCATCCCTTTTCA-TAGTCGATACTCAAA
1 ACCATCCCTTTTCATATTTGATGGTCATAACCATCCCTTTTCATTAATCGATGGTCGTC
* * * * * * *
21711213 ACTATCCATTTTCATATTTGAAGGTCGTCACCATCCCTTTTCA-TATTCGAGGGTCGTC
1 ACCATCCCTTTTCATATTTGATGGTCATAACCATCCCTTTTCATTAATCGATGGTCGTC
* * * *
21711271 ACCATCCCTTTGCATATTTGATGGTCAAAACCATTCTTTTTCATTAATCGATGGTCGTC
1 ACCATCCCTTTTCATATTTGATGGTCATAACCATCCCTTTTCATTAATCGATGGTCGTC
* * * * *
21711330 ACCGTTCCTTTTCATATTTGATGGTCGTTACCATCCCTTTTCATTAATCGATGCTCGTC
1 ACCATCCCTTTTCATATTTGATGGTCATAACCATCCCTTTTCATTAATCGATGGTCGTC
21711389 GATACGTTGT
Statistics
Matches: 192, Mismatches: 41, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
58 90 0.47
59 102 0.53
ACGTcount: A:0.22, C:0.27, G:0.12, T:0.39
Consensus pattern (59 bp):
ACCATCCCTTTTCATATTTGATGGTCATAACCATCCCTTTTCATTAATCGATGGTCGTC
Found at i:21716568 original size:18 final size:18
Alignment explanation
Indices: 21716546--21716595 Score: 61
Period size: 16 Copynumber: 2.9 Consensus size: 18
21716536 TAATACACGA
21716546 AATTTTTTTTATACTTCG
1 AATTTTTTTTATACTTCG
* *
21716564 TATTTTTTTAAT-C-TCG
1 AATTTTTTTTATACTTCG
21716580 AATTTTTTTT-TACTTC
1 AATTTTTTTTATACTTC
21716596 AAATATAACA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
15 1 0.04
16 12 0.46
17 3 0.12
18 10 0.38
ACGTcount: A:0.20, C:0.12, G:0.04, T:0.64
Consensus pattern (18 bp):
AATTTTTTTTATACTTCG
Found at i:21716584 original size:16 final size:17
Alignment explanation
Indices: 21716532--21716588 Score: 62
Period size: 18 Copynumber: 3.3 Consensus size: 17
21716522 ACTTCACCTC
*
21716532 TTTTTAATACACGAAATT
1 TTTTTAATACTCG-AATT
* *
21716550 TTTTTTATACTTCGTATT
1 TTTTTAATAC-TCGAATT
21716568 TTTTTAAT-CTCGAATT
1 TTTTTAATACTCGAATT
21716584 TTTTT
1 TTTTT
21716589 TTACTTCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
16 11 0.33
17 1 0.03
18 19 0.58
19 2 0.06
ACGTcount: A:0.25, C:0.11, G:0.05, T:0.60
Consensus pattern (17 bp):
TTTTTAATACTCGAATT
Found at i:21721860 original size:15 final size:15
Alignment explanation
Indices: 21721840--21721935 Score: 65
Period size: 15 Copynumber: 6.4 Consensus size: 15
21721830 CATTTTCAAT
21721840 TTCTTTCTCTTTTTC
1 TTCTTTCTCTTTTTC
*
21721855 TTCTTTCTCTTATTC
1 TTCTTTCTCTTTTTC
*
21721870 TT-TTTCCTCTTTTTA
1 TTCTTT-CTCTTTTTC
* *
21721885 TT-ATTCT-TCTTT-
1 TTCTTTCTCTTTTTC
**
21721897 TTCAATCTCTTTTTC
1 TTCTTTCTCTTTTTC
*
21721912 GAGTTCTTTTTCTTTTTC
1 ---TTCTTTCTCTTTTTC
21721930 TTCTTT
1 TTCTTT
21721936 TTAGAGTTTA
Statistics
Matches: 64, Mismatches: 10, Indels: 14
0.73 0.11 0.16
Matches are distributed among these distances:
12 2 0.03
13 8 0.12
14 9 0.14
15 33 0.52
18 12 0.19
ACGTcount: A:0.06, C:0.22, G:0.02, T:0.70
Consensus pattern (15 bp):
TTCTTTCTCTTTTTC
Found at i:21721871 original size:21 final size:21
Alignment explanation
Indices: 21721847--21721892 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
21721837 AATTTCTTTC
* *
21721847 TCTTTTTCTTCTTTCTCTTAT
1 TCTTTTTCCTCTTTCTATTAT
*
21721868 TCTTTTTCCTCTTTTTATTAT
1 TCTTTTTCCTCTTTCTATTAT
21721889 TCTT
1 TCTT
21721893 CTTTTTCAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.07, C:0.22, G:0.00, T:0.72
Consensus pattern (21 bp):
TCTTTTTCCTCTTTCTATTAT
Found at i:21721934 original size:27 final size:26
Alignment explanation
Indices: 21721862--21721943 Score: 69
Period size: 27 Copynumber: 3.0 Consensus size: 26
21721852 TTCTTCTTTC
*
21721862 TCTTATTCTTTTTCCTCTTTTT-A-T
1 TCTTATTCTTTTTCTTCTTTTTGAGT
* *
21721886 TATTCTTCTTTTTCAATCTCTTTTTCGAGT
1 TCTTATTCTTTTTC--T-TCTTTTT-GAGT
*
21721916 TCTTTTTCTTTTTCTTCTTTTTAGAGT
1 TCTTATTCTTTTTCTTCTTTTT-GAGT
21721943 T
1 T
21721944 TACTACAACT
Statistics
Matches: 46, Mismatches: 6, Indels: 9
0.75 0.10 0.15
Matches are distributed among these distances:
24 12 0.26
27 19 0.41
28 1 0.02
29 1 0.02
30 13 0.28
ACGTcount: A:0.10, C:0.18, G:0.05, T:0.67
Consensus pattern (26 bp):
TCTTATTCTTTTTCTTCTTTTTGAGT
Found at i:21721937 original size:39 final size:37
Alignment explanation
Indices: 21721814--21721935 Score: 113
Period size: 39 Copynumber: 3.2 Consensus size: 37
21721804 TCGCTCACTA
* *
21721814 TCTTCTTTCTCAAATTCATTTTCAATTTCTTTCTCTTTT
1 TCTTCTTTCTCAAATTCTTTTTC-A-TTCTTTTTCTTTT
** * * *
21721853 TCTTCTTTCTCTTATTCTTTTTC-CTCTTTTTATTAT
1 TCTTCTTTCTCAAATTCTTTTTCATTCTTTTTCTTTT
*
21721889 TCTTCTTTTTC-AATCTCTTTTTCGAGTTCTTTTTCTTTT
1 TCTTCTTTCTCAAAT-TCTTTTTC-A-TTCTTTTTCTTTT
21721928 TCTTCTTT
1 TCTTCTTT
21721936 TTAGAGTTTA
Statistics
Matches: 67, Mismatches: 12, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
35 2 0.03
36 27 0.40
39 38 0.57
ACGTcount: A:0.10, C:0.22, G:0.02, T:0.66
Consensus pattern (37 bp):
TCTTCTTTCTCAAATTCTTTTTCATTCTTTTTCTTTT
Found at i:21728387 original size:43 final size:43
Alignment explanation
Indices: 21728326--21728464 Score: 154
Period size: 43 Copynumber: 3.5 Consensus size: 43
21728316 AGTGATTCAG
*
21728326 GGAATCAGCGCTTAGCAACCCCTTTCACATTCAAAAATACGGT
1 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATACGGT
* ** *
21728369 GGAATCACCACTTAGCAACAAC---CA-ATT----AAT-CAG-
1 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATACGGT
*
21728402 GGAATTAGCACTTAGCAACCCCTTTCACATTCAAAAATACGGT
1 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATACGGT
21728445 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
21728465 ACCAATGATT
Statistics
Matches: 75, Mismatches: 11, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
33 18 0.24
34 2 0.03
35 3 0.04
36 2 0.03
37 3 0.04
39 3 0.04
40 2 0.03
41 3 0.04
42 2 0.03
43 37 0.49
ACGTcount: A:0.36, C:0.27, G:0.15, T:0.22
Consensus pattern (43 bp):
GGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATACGGT
Found at i:21728416 original size:76 final size:76
Alignment explanation
Indices: 21728289--21728501 Score: 329
Period size: 76 Copynumber: 2.8 Consensus size: 76
21728279 TATCCGTTAT
* * *
21728289 CGGTGGATTCAACACTTAGCAACCACCAGTGATTCAGGGAATCAGCGCTTAGCAACCCCTTTCAC
1 CGGTGGAATCAACACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCCTTTCAC
21728354 ATTCAAAAATA
66 ATTCAAAAATA
* * * * *
21728365 CGGTGGAATCACCACTTAGCAACAACCAATTAATCAGGGAATTAGCACTTAGCAACCCCTTTCAC
1 CGGTGGAATCAACACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCCTTTCAC
21728430 ATTCAAAAATA
66 ATTCAAAAATA
*
21728441 CGGTGGAATCAGCACTTAGCAACCACCAATGATTC-GAGGAATCAGCACTTAGCAACCCCTT
1 CGGTGGAATCAACACTTAGCAACCACCAATGATTCAG-GGAATCAGCACTTAGCAACCCCTT
21728502 GGGGGAATCA
Statistics
Matches: 123, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
75 1 0.01
76 122 0.99
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.22
Consensus pattern (76 bp):
CGGTGGAATCAACACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCCTTTCAC
ATTCAAAAATA
Found at i:21728487 original size:33 final size:33
Alignment explanation
Indices: 21728445--21728599 Score: 124
Period size: 33 Copynumber: 4.6 Consensus size: 33
21728435 AAAATACGGT
*
21728445 GGAATCAGCACTTAGCAACCACCAATGATTCGA
1 GGAATCAGCACTTAGCAACCACCAATGATTCGG
*
21728478 GGAATCAGCACTTAGCAACC-CC-----TTGGG
1 GGAATCAGCACTTAGCAACCACCAATGATTCGG
* * * *
21728505 GGAATCAGCACTTAGCAACCCCCTTCACATTTAAAATACTGT
1 GGAATCAGCACTTAGCAA-CCAC--CA-A--T--GATTC-GG
*
21728547 GGAATCAGCACTTAGCAACCACCAATGAATCGG
1 GGAATCAGCACTTAGCAACCACCAATGATTCGG
21728580 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
21728600 CCTTTATATT
Statistics
Matches: 97, Mismatches: 10, Indels: 30
0.71 0.07 0.22
Matches are distributed among these distances:
27 21 0.22
28 2 0.02
29 1 0.01
31 1 0.01
32 2 0.02
33 41 0.42
34 2 0.02
36 1 0.01
38 1 0.01
39 2 0.02
41 4 0.04
42 19 0.20
ACGTcount: A:0.34, C:0.28, G:0.19, T:0.19
Consensus pattern (33 bp):
GGAATCAGCACTTAGCAACCACCAATGATTCGG
Found at i:21728567 original size:102 final size:103
Alignment explanation
Indices: 21728401--21728603 Score: 345
Period size: 102 Copynumber: 2.0 Consensus size: 103
21728391 CAATTAATCA
* *
21728401 GGGAATTAGCACTTAGCAACCCCTTTCACATTCAAAAATACGGTGGAATCAGCACTTAGCAACCA
1 GGGAATCAGCACTTAGCAACCCCCTTCACATTCAAAAATACGGTGGAATCAGCACTTAGCAACCA
*
21728466 CCAATGATTCGAGGAATCAGCACTTAGCAACCCCTTGG
66 CCAATGAATCGAGGAATCAGCACTTAGCAACCCCTTGG
* *
21728504 GGGAATCAGCACTTAGCAACCCCCTTCACATT-TAAAATACTGTGGAATCAGCACTTAGCAACCA
1 GGGAATCAGCACTTAGCAACCCCCTTCACATTCAAAAATACGGTGGAATCAGCACTTAGCAACCA
*
21728568 CCAATGAATCGGGGAATCAGCACTTAGCAACCCCTT
66 CCAATGAATCGAGGAATCAGCACTTAGCAACCCCTT
21728604 TATATTCAAT
Statistics
Matches: 94, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
102 64 0.68
103 30 0.32
ACGTcount: A:0.33, C:0.28, G:0.18, T:0.21
Consensus pattern (103 bp):
GGGAATCAGCACTTAGCAACCCCCTTCACATTCAAAAATACGGTGGAATCAGCACTTAGCAACCA
CCAATGAATCGAGGAATCAGCACTTAGCAACCCCTTGG
Found at i:21729606 original size:17 final size:17
Alignment explanation
Indices: 21729568--21729600 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
21729558 GACCTCCAAT
21729568 TTAGAATTTCATAACAA
1 TTAGAATTTCATAACAA
21729585 TTAGACATTTC-TAACA
1 TTAGA-ATTTCATAACA
21729601 TGTAGAACTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.42, C:0.15, G:0.06, T:0.36
Consensus pattern (17 bp):
TTAGAATTTCATAACAA
Found at i:21735894 original size:43 final size:43
Alignment explanation
Indices: 21735833--21735971 Score: 163
Period size: 43 Copynumber: 3.5 Consensus size: 43
21735823 AGTGATTCGG
21735833 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATACGGT
1 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATACGGT
* ** *
21735876 GGAATCAACACTTAGCAACAAC---CA-A-T---GAAT-CGG-
1 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATACGGT
*
21735909 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATATGGT
1 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATACGGT
21735952 GGAATCAGCACTTAGCAACC
1 GGAATCAGCACTTAGCAACC
21735972 ACCAATGATT
Statistics
Matches: 77, Mismatches: 9, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
33 19 0.25
34 3 0.04
35 3 0.04
36 2 0.03
37 1 0.01
38 2 0.03
39 1 0.01
40 2 0.03
41 3 0.04
42 2 0.03
43 39 0.51
ACGTcount: A:0.37, C:0.27, G:0.16, T:0.21
Consensus pattern (43 bp):
GGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATACGGT
Found at i:21735922 original size:76 final size:76
Alignment explanation
Indices: 21735796--21736008 Score: 354
Period size: 76 Copynumber: 2.8 Consensus size: 76
21735786 TATCCGTTAT
* *
21735796 CGGTGGATTCAGCACTTAGCAACCACCAGTGATTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
21735861 ATTCAAAAATA
66 ATTCAAAAATA
* * *
21735872 CGGTGGAATCAACACTTAGCAACAACCAATGAATCGGGGAATCAGCACTTAGCAACCCCTTTCAC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
21735937 ATTCAAAAATA
66 ATTCAAAAATA
* * *
21735948 TGGTGGAATCAGCACTTAGCAACCACCAATGATTCGAGGAATCAACACTTAGCAACCCCTT
1 CGGTGGAATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTT
21736009 GGGGGAATCA
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
76 126 1.00
ACGTcount: A:0.34, C:0.27, G:0.17, T:0.21
Consensus pattern (76 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTTCAC
ATTCAAAAATA
Found at i:21736075 original size:102 final size:103
Alignment explanation
Indices: 21735907--21736110 Score: 311
Period size: 102 Copynumber: 2.0 Consensus size: 103
21735897 CCAATGAATC
* * ** *
21735907 GGGGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATATGGTGGAATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTAACATTCAAAAATACCGTGGAATCAGAACTTAGCAACC
*
21735972 ACCAATGATTCGAGGAATCAACACTTAGCAACCCCTTG
66 ACCAATGAATCGAGGAATCAACACTTAGCAACCCCTTG
*
21736010 GGGGAATCAGCACTTAGCAACCCCCTTAACATT-TAAAATACCGTGGAATCAGAACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCCTTAACATTCAAAAATACCGTGGAATCAGAACTTAGCAACC
* **
21736074 ACCAATGAATCGGGGAATCAGTACTTAGCAACCCCTT
66 ACCAATGAATCGAGGAATCAACACTTAGCAACCCCTT
21736111 TATATTCAAT
Statistics
Matches: 91, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
102 60 0.66
103 31 0.34
ACGTcount: A:0.34, C:0.27, G:0.18, T:0.21
Consensus pattern (103 bp):
GGGGAATCAGCACTTAGCAACCCCCTTAACATTCAAAAATACCGTGGAATCAGAACTTAGCAACC
ACCAATGAATCGAGGAATCAACACTTAGCAACCCCTTG
Found at i:21738424 original size:32 final size:32
Alignment explanation
Indices: 21738383--21738458 Score: 116
Period size: 32 Copynumber: 2.4 Consensus size: 32
21738373 GCGATGCTAC
*** *
21738383 TGATGGCTTTGTATTGGTCCTAGTACCGTTAT
1 TGATGGCTTTGTACCAGTCATAGTACCGTTAT
21738415 TGATGGCTTTGTACCAGTCATAGTACCGTTAT
1 TGATGGCTTTGTACCAGTCATAGTACCGTTAT
21738447 TGATGGCTTTGT
1 TGATGGCTTTGT
21738459 GCCGATCATG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.17, C:0.16, G:0.25, T:0.42
Consensus pattern (32 bp):
TGATGGCTTTGTACCAGTCATAGTACCGTTAT
Found at i:21738484 original size:32 final size:32
Alignment explanation
Indices: 21738406--21738594 Score: 168
Period size: 32 Copynumber: 5.9 Consensus size: 32
21738396 TTGGTCCTAG
* *
21738406 TACCGTTATTGATGGCTTTGTACC-AGTCATAG-
1 TACCGTTACTGATGGCTTTGTGCCGA-TCAT-GT
*
21738438 TACCGTTATTGATGGCTTTGTGCCGATCATGT
1 TACCGTTACTGATGGCTTTGTGCCGATCATGT
* * *
21738470 TACCATTA-TCGATGGCTATGTGCCGATCATAT
1 TACCGTTACT-GATGGCTTTGTGCCGATCATGT
* * * * * *
21738502 CATCGTTACTAAGGGCTATGTGCCGATCATAT
1 TACCGTTACTGATGGCTTTGTGCCGATCATGT
* * * * *
21738534 CACCGCTACAGATGGCTTTGTGGCGATCATGC
1 TACCGTTACTGATGGCTTTGTGCCGATCATGT
*
21738566 TACCGTTACTGATGGCTTTGTGCTGATCA
1 TACCGTTACTGATGGCTTTGTGCCGATCA
21738595 CATTACTGAA
Statistics
Matches: 130, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
31 2 0.02
32 126 0.97
33 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.34
Consensus pattern (32 bp):
TACCGTTACTGATGGCTTTGTGCCGATCATGT
Found at i:21738500 original size:64 final size:64
Alignment explanation
Indices: 21738406--21738600 Score: 191
Period size: 64 Copynumber: 3.0 Consensus size: 64
21738396 TTGGTCCTAG
* * * *
21738406 TACCGTTATTGATGGCTTTGTACC-AGTCATAGTACCGTTATTGATGGCTTTGTGCCGATCATGT
1 TACCGTTATCGATGGCTTTGTGCCGA-TCATAGTACCGTTACTGATGGCTTTGTGCCGATCATAT
* * * * * *
21738470 TACCATTATCGATGGCTATGTGCCGATCATA-TCATCGTTACTAAGGGCTATGTGCCGATCATAT
1 TACCGTTATCGATGGCTTTGTGCCGATCATAGT-ACCGTTACTGATGGCTTTGTGCCGATCATAT
* * * * *
21738534 CACCGCTA-CAGATGGCTTTGTGGCGATCAT-GCTACCGTTACTGATGGCTTTGTGCTGATCACA
1 TACCGTTATC-GATGGCTTTGTGCCGATCATAG-TACCGTTACTGATGGCTTTGTGCCGATCATA
21738597 T
64 T
21738598 TAC
1 TAC
21738601 TGAACTTATG
Statistics
Matches: 104, Mismatches: 22, Indels: 10
0.76 0.16 0.07
Matches are distributed among these distances:
63 2 0.02
64 100 0.96
65 2 0.02
ACGTcount: A:0.21, C:0.22, G:0.23, T:0.34
Consensus pattern (64 bp):
TACCGTTATCGATGGCTTTGTGCCGATCATAGTACCGTTACTGATGGCTTTGTGCCGATCATAT
Found at i:21740250 original size:42 final size:42
Alignment explanation
Indices: 21740192--21740277 Score: 129
Period size: 42 Copynumber: 2.0 Consensus size: 42
21740182 CGTGTCGCAT
* * *
21740192 GGCCTTGTGTCTCACACGACTGAGACACACG-CTCGTGTCTTA
1 GGCCGTGTGTCTCACACAACTGAGACACAAGCCT-GTGTCTTA
21740234 GGCCGTGTGTCTCACACAACTGAGACACAAGCCTGTGTCTTA
1 GGCCGTGTGTCTCACACAACTGAGACACAAGCCTGTGTCTTA
21740276 GG
1 GG
21740278 TCGTATGGAC
Statistics
Matches: 40, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
42 38 0.95
43 2 0.05
ACGTcount: A:0.21, C:0.29, G:0.26, T:0.24
Consensus pattern (42 bp):
GGCCGTGTGTCTCACACAACTGAGACACAAGCCTGTGTCTTA
Found at i:21741716 original size:29 final size:29
Alignment explanation
Indices: 21741654--21741830 Score: 203
Period size: 29 Copynumber: 6.0 Consensus size: 29
21741644 GATGGTTGAA
* *
21741654 ACCATCCCTTTTCATTAATCGATGGTTGTC
1 ACCATCCCTTTTCA-TATTCGATGGTCGTC
*
21741684 ACCATCCCTTTTCATATTTGATGGTCGTC
1 ACCATCCCTTTTCATATTCGATGGTCGTC
*
21741713 ACCATCCCTTTTCATATTCGATGGTCGTT
1 ACCATCCCTTTTCATATTCGATGGTCGTC
* **
21741742 ACCATCCCTTTTCATATTCAATGGTCGAA
1 ACCATCCCTTTTCATATTCGATGGTCGTC
* * *
21741771 ATCAACCCTTTTCATTAATCGATGGTCGTC
1 ACCATCCCTTTTCA-TATTCGATGGTCGTC
* *
21741801 ACCAT-CCTTTTACATTAATCGATGCTCGTC
1 ACCATCCCTTTT-CA-TATTCGATGGTCGTC
21741831 GATACGCCGT
Statistics
Matches: 128, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
29 83 0.65
30 45 0.35
ACGTcount: A:0.21, C:0.28, G:0.12, T:0.38
Consensus pattern (29 bp):
ACCATCCCTTTTCATATTCGATGGTCGTC
Found at i:21741754 original size:58 final size:59
Alignment explanation
Indices: 21741645--21741811 Score: 230
Period size: 58 Copynumber: 2.9 Consensus size: 59
21741635 GTGCTAAACG
* * **
21741645 ATGGTTGAAACCATCCCTTTTCATTAATCGATGGTTGTCACCATCCCTTTTCATATTTG
1 ATGGTCGAAACCATCCCTTTTCATTAATCGATGGTCGTCACCATCCCTTTTCATATTCA
** * *
21741704 ATGGTCGTCACCATCCCTTTTCA-TATTCGATGGTCGTTACCATCCCTTTTCATATTCA
1 ATGGTCGAAACCATCCCTTTTCATTAATCGATGGTCGTCACCATCCCTTTTCATATTCA
* *
21741762 ATGGTCGAAATCAACCCTTTTCATTAATCGATGGTCGTCACCAT-CCTTTT
1 ATGGTCGAAACCATCCCTTTTCATTAATCGATGGTCGTCACCATCCCTTTT
21741812 ACATTAATCG
Statistics
Matches: 93, Mismatches: 14, Indels: 3
0.85 0.13 0.03
Matches are distributed among these distances:
58 55 0.59
59 38 0.41
ACGTcount: A:0.22, C:0.26, G:0.13, T:0.39
Consensus pattern (59 bp):
ATGGTCGAAACCATCCCTTTTCATTAATCGATGGTCGTCACCATCCCTTTTCATATTCA
Found at i:21751769 original size:51 final size:50
Alignment explanation
Indices: 21751702--21751945 Score: 278
Period size: 51 Copynumber: 4.9 Consensus size: 50
21751692 CAATGATGTT
* *
21751702 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCA-AACCATC
* * * *
21751753 CGATACACGTAGTAGCCTG--CATAGTACTACACATGTGATCGAAACTATC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACATGTGA-CCAAACCATC
* * *
21751802 CGGTACGCATAGTAGCCTGCACATAGTACTACACATGTGATCGAAACTATC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACATGTGA-CCAAACCATC
* * * * *
21751853 CGGTACGCATAGTAGCCTGCACATAGAACTACACATGCGACC-TATCATTC
1 CGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCAAACCA-TC
* * *
21751903 TGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA
1 CGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCA
21751946 TCACTTTCAC
Statistics
Matches: 167, Mismatches: 21, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
49 42 0.25
50 41 0.25
51 84 0.50
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.23
Consensus pattern (50 bp):
CGGTACACATAGTAGCCTGCACATAGTACTACACATGTGACCAAACCATC
Found at i:21757462 original size:51 final size:50
Alignment explanation
Indices: 21757401--21757579 Score: 180
Period size: 51 Copynumber: 3.5 Consensus size: 50
21757391 CCAATTCACA
* * * * *
21757401 TAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACG
1 TAGTAACCTACACATAGTACTACACACGCGACCA-TACCATCCGGTACACG
* * * * * * *
21757452 TAGTAACCTGCACATAGTACTACACACGCGATCGAAACTATTCGGTACGCA
1 TAGTAACCTACACATAGTACTACACACGCGA-CCATACCATCCGGTACACG
* * *
21757503 TAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTCCGGTACACG
1 TAGTAACCTACACATAGTACTACACACGCGACCATACCA-TCCGGTACACG
*
21757553 TAGTAACCTACATATAGTACTACACAC
1 TAGTAACCTACACATAGTACTACACAC
21757580 ATGACCATCA
Statistics
Matches: 103, Mismatches: 23, Indels: 5
0.79 0.18 0.04
Matches are distributed among these distances:
49 2 0.02
50 33 0.32
51 66 0.64
52 2 0.02
ACGTcount: A:0.33, C:0.28, G:0.15, T:0.23
Consensus pattern (50 bp):
TAGTAACCTACACATAGTACTACACACGCGACCATACCATCCGGTACACG
Found at i:21757617 original size:101 final size:101
Alignment explanation
Indices: 21757397--21757580 Score: 244
Period size: 101 Copynumber: 1.8 Consensus size: 101
21757387 ATGTCCAATT
* * *
21757397 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAACCTG
1 CACATAGTAGCCTACACATAGTACTACACATGCGACCA-TACCATCCGATACACGTAGTAACCTA
* * **
21757462 CACATAGTACTACACACGCGATCGAAACTATTCGGTA
65 CACATAGTACTACACACACGATCCAAACTATTCCATA
* * *
21757499 CGCATAGTAGCCTACACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAACCTA
1 CACATAGTAGCCTACACATAGTACTACACATGCGACCATACCA-TCCGATACACGTAGTAACCTA
*
21757563 CATATAGTACTACACACA
65 CACATAGTACTACACACA
21757581 TGACCATCAC
Statistics
Matches: 73, Mismatches: 8, Indels: 3
0.87 0.10 0.04
Matches are distributed among these distances:
100 4 0.05
101 35 0.48
102 34 0.47
ACGTcount: A:0.34, C:0.29, G:0.15, T:0.23
Consensus pattern (101 bp):
CACATAGTAGCCTACACATAGTACTACACATGCGACCATACCATCCGATACACGTAGTAACCTAC
ACATAGTACTACACACACGATCCAAACTATTCCATA
Found at i:21758923 original size:27 final size:27
Alignment explanation
Indices: 21758893--21759132 Score: 304
Period size: 27 Copynumber: 8.9 Consensus size: 27
21758883 TTTCATCTTT
**
21758893 TAGGGGTATAACAGTCATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCCTA
**
21758920 TAGGGGTATTTTGGTCATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCCTA
*
21758947 TAGGGGTATTCCAGTCATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCCTA
** * *
21758974 TAAAGGTATTTCGGTCATTCTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCCTA
*
21759001 T-GGGAGTATTTCGGTCATTTTACCCTA
1 TAGGG-GTATTTCAGTCATTTTACCCTA
*
21759028 TTGGGGTATTTCAGTCATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCCTA
* *
21759055 TGGGGGTATTTCAGTTATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCCTA
* *
21759082 AAGGGGTATTT-TGATCATTTTACCCTA
1 TAGGGGTATTTCAG-TCATTTTACCCTA
*
21759109 TAAGGGTATTTCAGTCATTTTACC
1 TAGGGGTATTTCAGTCATTTTACC
21759133 TATTTTAGGG
Statistics
Matches: 184, Mismatches: 25, Indels: 8
0.85 0.12 0.04
Matches are distributed among these distances:
26 2 0.01
27 178 0.97
28 4 0.02
ACGTcount: A:0.23, C:0.18, G:0.19, T:0.40
Consensus pattern (27 bp):
TAGGGGTATTTCAGTCATTTTACCCTA
Found at i:21760134 original size:46 final size:46
Alignment explanation
Indices: 21760074--21760225 Score: 187
Period size: 46 Copynumber: 3.5 Consensus size: 46
21760064 ACTTAAAATA
* * * *
21760074 ATCAAGTGATAAAGTGATAAGTGATAGCTTCGGCTATACTTATCTG
1 ATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTG
*
21760120 ATCAAGAGACAAAGTGATAAGTGATAGCTTTAGCTACACTTATCTG
1 ATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTG
21760166 ATCAAGAGACAAAGTGATAA--G-T-G-----GCTACACTTATCTG
1 ATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTG
*
21760203 ATCAAGAAACAAAGTGATAAGTG
1 ATCAAGAGACAAAGTGATAAGTG
21760226 GCTACACTTA
Statistics
Matches: 98, Mismatches: 6, Indels: 11
0.85 0.05 0.10
Matches are distributed among these distances:
37 33 0.34
39 1 0.01
42 1 0.01
43 1 0.01
44 1 0.01
46 61 0.62
ACGTcount: A:0.38, C:0.14, G:0.21, T:0.27
Consensus pattern (46 bp):
ATCAAGAGACAAAGTGATAAGTGATAGCTTCAGCTACACTTATCTG
Found at i:21760196 original size:37 final size:37
Alignment explanation
Indices: 21760152--21760297 Score: 233
Period size: 37 Copynumber: 4.0 Consensus size: 37
21760142 GATAGCTTTA
*
21760152 GCTACACTTATCTGATCAAGAGACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
21760189 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
* *
21760226 GCTACACTTATGTGATCAAGAAACAAAGTGATAGGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
**
21760263 GCTACACTTATCTGATC-AGGGAC-AAGTGATAAGTG
1 GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
21760298 ATCATACGTA
Statistics
Matches: 102, Mismatches: 7, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
35 11 0.11
36 4 0.04
37 87 0.85
ACGTcount: A:0.37, C:0.16, G:0.23, T:0.25
Consensus pattern (37 bp):
GCTACACTTATCTGATCAAGAAACAAAGTGATAAGTG
Found at i:21763679 original size:50 final size:51
Alignment explanation
Indices: 21763599--21763706 Score: 132
Period size: 50 Copynumber: 2.1 Consensus size: 51
21763589 TGGACAAGCC
21763599 ACCACTGATAACACTTTTGTGGACAAGCCACCACTGAATTGCAGATATACT
1 ACCACTGATAACACTTTTGTGGACAAGCCACCACTGAATTGCAGATATACT
* ** *
21763650 ACCACTGATATA-A-TTTTG-GGAACATGCCACCACTGGTTTGCAGATATGCT
1 ACCACTGATA-ACACTTTTGTGG-ACAAGCCACCACTGAATTGCAGATATACT
*
21763700 GCCACTG
1 ACCACTG
21763707 CTTCCACCTT
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
49 2 0.04
50 36 0.72
51 11 0.22
52 1 0.02
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (51 bp):
ACCACTGATAACACTTTTGTGGACAAGCCACCACTGAATTGCAGATATACT
Found at i:21784314 original size:26 final size:26
Alignment explanation
Indices: 21784278--21784329 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
21784268 GTGTGGGGGT
21784278 AAGATAGGAAATTTGTTTTTTATTTC
1 AAGATAGGAAATTTGTTTTTTATTTC
21784304 AAGATAGGAAATTTGTTTTTTATTTC
1 AAGATAGGAAATTTGTTTTTTATTTC
21784330 TATGCTTTCT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.04, G:0.15, T:0.50
Consensus pattern (26 bp):
AAGATAGGAAATTTGTTTTTTATTTC
Found at i:21786625 original size:138 final size:138
Alignment explanation
Indices: 21786377--21786928 Score: 845
Period size: 138 Copynumber: 4.0 Consensus size: 138
21786367 AAAAGGAAAA
* **
21786377 TATATTCTTTCCAAAAGAATATTAATTTCCATGTCATTTATATTTTGACAAAAATTAATTAATAT
1 TATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAATAT
* * *
21786442 AACTGTTTATATTAATAAATTCGGTAACATATACACAATTAATATTTTCTATGAATCAAATTCAT
66 AACTATTTATATTAATAAATTCGGTAAAATATACACAATTAATATTTTGTATGAATCAAATTCAT
21786507 ATATTAAT
131 ATATTAAT
* *
21786515 TATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATCTTTTGTCCGAAATTAATTAATAT
1 TATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAATAT
* * * *
21786580 AACTATTTATATTAATAAATTTGGTAACATATACACAAATAATATTTTGTATGAATTAAATTCAT
66 AACTATTTATATTAATAAATTCGGTAAAATATACACAATTAATATTTTGTATGAATCAAATTCAT
21786645 ATATTAAT
131 ATATTAAT
* * *
21786653 TATATTCTTTCTAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTATTAT
1 TATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAATAT
* * *
21786718 AACT-GTTATATTAATAAATTAGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
66 AACTATTTATATTAATAAATTCGGTAAAATATACACAATTAATATTTTGTATGAATCAAATTCAT
* *
21786782 ACATCAAT
131 ATATTAAT
* * *
21786790 TAAATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTAACCGAAATTAATTAATAT
1 TATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAATAT
* * * * *
21786855 AACTATTTATATTAATAAATTCGATAAAATATATACAATTAATAATTTATATGAACCAAATTCAT
66 AACTATTTATATTAATAAATTCGGTAAAATATACACAATTAATATTTTGTATGAATCAAATTCAT
21786920 ATATTAAT
131 ATATTAAT
21786928 T
1 T
21786929 TTATCTATGT
Statistics
Matches: 376, Mismatches: 37, Indels: 2
0.91 0.09 0.00
Matches are distributed among these distances:
137 123 0.33
138 253 0.67
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (138 bp):
TATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAATAT
AACTATTTATATTAATAAATTCGGTAAAATATACACAATTAATATTTTGTATGAATCAAATTCAT
ATATTAAT
Found at i:21786699 original size:71 final size:71
Alignment explanation
Indices: 21786483--21786699 Score: 166
Period size: 71 Copynumber: 3.1 Consensus size: 71
21786473 TACACAATTA
* * *
21786483 ATATTTTCTATGAATCAAATTCATATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATG
1 ATATTTTGTATGAATTAAATTCATATATTAATTATATTCTTTCTAAAAGAATATTAATTTCCATG
21786548 TCTTTT
66 TCTTTT
* ** * * * * * *
21786554 ATCTTTTGTCCGAAATT-AATT-A-ATA-TAACTAT-TTATAT-TAATA-AATTTGGTAACATAT
1 ATATTTTGTATG-AATTAAATTCATATATTAATTATATTCTTTCTAAAAGAATAT--T-A-ATTT
* ** *
21786612 ACA---CAAATA
61 CCATGTC-TTTT
21786621 ATATTTTGTATGAATTAAATTCATATATTAATTATATTCTTTCTAAAAGAATATTAATTTCCATG
1 ATATTTTGTATGAATTAAATTCATATATTAATTATATTCTTTCTAAAAGAATATTAATTTCCATG
21786686 TCTTTT
66 TCTTTT
21786692 ATATTTTG
1 ATATTTTG
21786700 ACTGAAATTA
Statistics
Matches: 101, Mismatches: 29, Indels: 32
0.62 0.18 0.20
Matches are distributed among these distances:
65 4 0.04
66 8 0.08
67 19 0.19
68 8 0.08
69 16 0.16
70 8 0.08
71 26 0.26
72 8 0.08
73 4 0.04
ACGTcount: A:0.37, C:0.10, G:0.06, T:0.47
Consensus pattern (71 bp):
ATATTTTGTATGAATTAAATTCATATATTAATTATATTCTTTCTAAAAGAATATTAATTTCCATG
TCTTTT
Found at i:21786869 original size:275 final size:276
Alignment explanation
Indices: 21786377--21786928 Score: 872
Period size: 275 Copynumber: 2.0 Consensus size: 276
21786367 AAAAGGAAAA
21786377 TATATTCTTTCCAAAAGAATATTAATTTCCATGTCATTTATATTTTGACAAAAATTAATTAATAT
1 TATATTCTTTCCAAAAGAATATTAATTTCCATGTCATTTATATTTTGACAAAAATTAATTAATAT
* *
21786442 AACTGTTTATATTAATAAATTCGGTAACATATACACAATTAATATTTTCTATGAATCAAATTCAT
66 AACTGTTTATATTAATAAATTAGGTAAAATATACACAATTAATATTTTCTATGAATCAAATTCAT
* * * * **
21786507 ATATTAATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATCTTTTGTCCGAAATTA
131 ACATCAATTAAATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTAACCGAAATTA
* * * * * **
21786572 ATTAATATAACTATTTATATTAATAAATTTGGTAACATATACACAAATAATATTTTGTATGAATT
196 ATTAATATAACTATTTATATTAATAAATTCGATAAAATATACACAAATAATAATTTATATGAACC
21786637 AAATTCATATATTAAT
261 AAATTCATATATTAAT
* * ** *
21786653 TATATTCTTTCTAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACTGAAATTAATTATTAT
1 TATATTCTTTCCAAAAGAATATTAATTTCCATGTCATTTATATTTTGACAAAAATTAATTAATAT
* *
21786718 AACTG-TTATATTAATAAATTAGGTAAAATATATACAATTAATATTTTGTATGAATCAAATTCAT
66 AACTGTTTATATTAATAAATTAGGTAAAATATACACAATTAATATTTTCTATGAATCAAATTCAT
*
21786782 ACATCAATTAAATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTAACCGAAATTA
131 ACATCAATTAAATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTAACCGAAATTA
* *
21786847 ATTAATATAACTATTTATATTAATAAATTCGATAAAATATATACAATTAATAATTTATATGAACC
196 ATTAATATAACTATTTATATTAATAAATTCGATAAAATATACACAAATAATAATTTATATGAACC
21786912 AAATTCATATATTAAT
261 AAATTCATATATTAAT
21786928 T
1 T
21786929 TTATCTATGT
Statistics
Matches: 251, Mismatches: 25, Indels: 1
0.91 0.09 0.00
Matches are distributed among these distances:
275 186 0.74
276 65 0.26
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (276 bp):
TATATTCTTTCCAAAAGAATATTAATTTCCATGTCATTTATATTTTGACAAAAATTAATTAATAT
AACTGTTTATATTAATAAATTAGGTAAAATATACACAATTAATATTTTCTATGAATCAAATTCAT
ACATCAATTAAATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTAACCGAAATTA
ATTAATATAACTATTTATATTAATAAATTCGATAAAATATACACAAATAATAATTTATATGAACC
AAATTCATATATTAAT
Found at i:21794901 original size:23 final size:23
Alignment explanation
Indices: 21794864--21794914 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
21794854 ATAAGCTTAT
21794864 TGTAATATCCCGAAAATTACTAC
1 TGTAATATCCCGAAAATTACTAC
21794887 TGTAATA-CCCTGAAAATTACTAC
1 TGTAATATCCC-GAAAATTACTAC
*
21794910 AGTAA
1 TGTAA
21794915 GAAAATAGAT
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 3 0.12
23 23 0.88
ACGTcount: A:0.41, C:0.20, G:0.10, T:0.29
Consensus pattern (23 bp):
TGTAATATCCCGAAAATTACTAC
Found at i:21797923 original size:50 final size:50
Alignment explanation
Indices: 21797865--21798145 Score: 339
Period size: 50 Copynumber: 5.6 Consensus size: 50
21797855 TATGAGCCAG
*
21797865 TGTAAGACCATGACTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
21797915 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * *
21797965 TGTAAGACCATGTCTGGGACATGGCGTTGGCACTGGGATGAGAGGTCCCC
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * * * * **
21798015 CGTAAGACCATGTTTGGGACATGGCATGGGCACCGATATGAGAACTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * * * ** * * * ** *
21798065 TGTAAGAACATATCTGGGATATGGCATTGGCA-ATACAGGAAACATCTCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
*
21798114 TGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCA
21798146 TGTAATTATC
Statistics
Matches: 199, Mismatches: 32, Indels: 1
0.86 0.14 0.00
Matches are distributed among these distances:
49 37 0.19
50 162 0.81
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
Found at i:21799665 original size:23 final size:23
Alignment explanation
Indices: 21799627--21799677 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
21799617 GGGGCGGAAA
* *
21799627 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
21799650 TGTAATACCCCAAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
*
21799673 AGTAA
1 TGTAA
21799678 GAAAGTAGGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.43, C:0.22, G:0.08, T:0.27
Consensus pattern (23 bp):
TGTAATACCCCAAAAATTACTAC
Found at i:21802137 original size:41 final size:41
Alignment explanation
Indices: 21802071--21802285 Score: 227
Period size: 41 Copynumber: 5.3 Consensus size: 41
21802061 GGGAGCACAA
* * * *
21802071 ATGTGC-ATTCAGAGGTATCAAAGTACGAATAGGGGCACGT
1 ATGTGCAATTCAGGGGTACCGAAGTACGAACAGGGGCACGT
* *** *
21802111 ATGTGCAATTTAGGGGTAGAAAAGTACAAACAGGGGCACGT
1 ATGTGCAATTCAGGGGTACCGAAGTACGAACAGGGGCACGT
* * * *
21802152 ATGTGCAATTCAAGGGTACCGAAGTATGAATAGGGGCACAT
1 ATGTGCAATTCAGGGGTACCGAAGTACGAACAGGGGCACGT
* * * * *
21802193 ATGTGCAATTTAGGGGTACTGAAGTACGAACAAGGGTACAT
1 ATGTGCAATTCAGGGGTACCGAAGTACGAACAGGGGCACGT
* * *
21802234 ATGTGCAATTCA-GGGTAGCGAAGTACAAACAGGGGCACGC
1 ATGTGCAATTCAGGGGTACCGAAGTACGAACAGGGGCACGT
21802274 ATGTGCAATTCA
1 ATGTGCAATTCA
21802286 TACAATAATT
Statistics
Matches: 144, Mismatches: 30, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
40 39 0.27
41 105 0.73
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (41 bp):
ATGTGCAATTCAGGGGTACCGAAGTACGAACAGGGGCACGT
Found at i:21802218 original size:82 final size:81
Alignment explanation
Indices: 21802065--21802283 Score: 269
Period size: 82 Copynumber: 2.7 Consensus size: 81
21802055 GTAAACGGGA
* * *
21802065 GCACAAATGTGC-ATTCAGAGGTATCAAAGTACGAATAGGGGCACGTATGTGCAATTTAGGGGTA
1 GCACATATGTGCAATTCAG-GGTACCGAAGTACGAATAGGGGCACGTATGTGCAATTTAGGGGTA
* *
21802129 GAAAAGTACAAACAGGG
65 CAAAAGTACAAACAAGG
* * *
21802146 GCACGTATGTGCAATTCAAGGGTACCGAAGTATGAATAGGGGCACATATGTGCAATTTAGGGGTA
1 GCACATATGTGCAATTC-AGGGTACCGAAGTACGAATAGGGGCACGTATGTGCAATTTAGGGGTA
** *
21802211 CTGAAGTACGAACAAGG
65 CAAAAGTACAAACAAGG
* * * * *
21802228 GTACATATGTGCAATTCAGGGTAGCGAAGTACAAACAGGGGCACGCATGTGCAATT
1 GCACATATGTGCAATTCAGGGTACCGAAGTACGAATAGGGGCACGTATGTGCAATT
21802284 CATACAATAA
Statistics
Matches: 117, Mismatches: 19, Indels: 4
0.84 0.14 0.03
Matches are distributed among these distances:
81 43 0.37
82 72 0.62
83 2 0.02
ACGTcount: A:0.34, C:0.15, G:0.30, T:0.21
Consensus pattern (81 bp):
GCACATATGTGCAATTCAGGGTACCGAAGTACGAATAGGGGCACGTATGTGCAATTTAGGGGTAC
AAAAGTACAAACAAGG
Found at i:21808187 original size:46 final size:47
Alignment explanation
Indices: 21808085--21808221 Score: 147
Period size: 46 Copynumber: 3.0 Consensus size: 47
21808075 CAGGGCTTAA
* * * *
21808085 TATTCATGTATTCTCGAGTCCACAACATATGTAGGAGAT-TGAAACC
1 TATTCATGTATTCTCGAGTTCACAACATATGCAGGAGCTCAGAAACC
** * * *
21808131 TAAACTTGTATTCTCGAGTTCACAACATATGCAGGGGCTCAG-AATC
1 TATTCATGTATTCTCGAGTTCACAACATATGCAGGAGCTCAGAAACC
*
21808177 TATTCATGTATTCTCGAG-TCTGCAACATATGCAGGAGCTC-GAAAC
1 TATTCATGTATTCTCGAGTTC-ACAACATATGCAGGAGCTCAGAAAC
21808222 TTGGGTAAGA
Statistics
Matches: 73, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
45 3 0.04
46 69 0.95
47 1 0.01
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (47 bp):
TATTCATGTATTCTCGAGTTCACAACATATGCAGGAGCTCAGAAACC
Found at i:21809438 original size:92 final size:92
Alignment explanation
Indices: 21809262--21809452 Score: 265
Period size: 92 Copynumber: 2.1 Consensus size: 92
21809252 CGCAAAAAGT
* * * * *
21809262 GCCGCTATAGACAATGTCGCTAATTTTAGTGGTGTTTATGTGAAAAAACGCCTCTAAAAATCATG
1 GCCGCTATAGACAACGTCACTAATTTTAGCGGCGTTTATGTGAAAAAACGCCGCTAAAAATCATG
*
21809327 ACATTTAGCGGCGCTTCCACCAAAAAC
66 ACATTTAGCCGCGCTTCCACCAAAAAC
* * * *
21809354 GCCGTTATATACAACGTCACTAATTTTAGCGGCGTTTATGTGAAAAAATGCCGCTAAAGATCATG
1 GCCGCTATAGACAACGTCACTAATTTTAGCGGCGTTTATGTGAAAAAACGCCGCTAAAAATCATG
* * *
21809419 ACCTTTAGCCGTGCTTCCACCACAAAC
66 ACATTTAGCCGCGCTTCCACCAAAAAC
21809446 GCCGCTA
1 GCCGCTA
21809453 AAGATCATGA
Statistics
Matches: 85, Mismatches: 14, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
92 85 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (92 bp):
GCCGCTATAGACAACGTCACTAATTTTAGCGGCGTTTATGTGAAAAAACGCCGCTAAAAATCATG
ACATTTAGCCGCGCTTCCACCAAAAAC
Found at i:21809464 original size:43 final size:43
Alignment explanation
Indices: 21809403--21809573 Score: 236
Period size: 43 Copynumber: 4.0 Consensus size: 43
21809393 GTGAAAAAAT
**
21809403 GCCGCTAAAGATCATGACCTTTAGCCGTGCTTCCACCACAAAC
1 GCCGCTAAAGATCATGACCTTTAGCCGCACTTCCACCACAAAC
*
21809446 GCCGCTAAAGATCATGACCTTTAGCGGCACTTCCACCACAAAC
1 GCCGCTAAAGATCATGACCTTTAGCCGCACTTCCACCACAAAC
* * *
21809489 ACCACTAAAGATCATGACCTTTAGCGGCACTTCCACCACAAAC
1 GCCGCTAAAGATCATGACCTTTAGCCGCACTTCCACCACAAAC
* * * *
21809532 GCCGCTAAAAATCATGACTTTTAG-CGACGCTTCTACCACAAA
1 GCCGCTAAAGATCATGACCTTTAGCCG-CACTTCCACCACAAA
21809574 AGCCACTATA
Statistics
Matches: 115, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
42 1 0.01
43 114 0.99
ACGTcount: A:0.32, C:0.33, G:0.15, T:0.20
Consensus pattern (43 bp):
GCCGCTAAAGATCATGACCTTTAGCCGCACTTCCACCACAAAC
Found at i:21809522 original size:86 final size:86
Alignment explanation
Indices: 21809398--21809638 Score: 269
Period size: 86 Copynumber: 2.8 Consensus size: 86
21809388 TTTATGTGAA
* * ** *
21809398 AAAATGCCGCTAAAGATCATGACCTTTAGCCGTGCTTCCACCACAAACGCCGCTAAAGATCATGA
1 AAAA-GCCACTAAAGATCATGACCTTTAGCGGCACTTCCACCACAAACGCCGCTAAAAATCATGA
*
21809463 CCTTTAGCGGCACTTCCACCAC
65 CCTTTAGCGACACTTCCACCAC
21809485 AAACA-CCACTAAAGATCATGACCTTTAGCGGCACTTCCACCACAAACGCCGCTAAAAATCATGA
1 AAA-AGCCACTAAAGATCATGACCTTTAGCGGCACTTCCACCACAAACGCCGCTAAAAATCATGA
* * *
21809549 CTTTTAGCGACGCTTCTACCAC
65 CCTTTAGCGACACTTCCACCAC
* * **
21809571 AAAAGCCACTATAAAGA--ATGACTTTTAGCGGCGCCTT--TTCACAAACGCCGCTAAAAA-CAT
1 AAAAGCCAC--TAAAGATCATGACCTTTAGCGGC-ACTTCCACCACAAACGCCGCTAAAAATCAT
*
21809631 GACTTTTA
63 GACCTTTA
21809639 AAAAATATTT
Statistics
Matches: 136, Mismatches: 13, Indels: 13
0.84 0.08 0.08
Matches are distributed among these distances:
84 11 0.08
85 19 0.14
86 93 0.68
87 6 0.04
88 7 0.05
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.22
Consensus pattern (86 bp):
AAAAGCCACTAAAGATCATGACCTTTAGCGGCACTTCCACCACAAACGCCGCTAAAAATCATGAC
CTTTAGCGACACTTCCACCAC
Found at i:21809592 original size:43 final size:43
Alignment explanation
Indices: 21809416--21809602 Score: 159
Period size: 43 Copynumber: 4.3 Consensus size: 43
21809406 GCTAAAGATC
* ** * *
21809416 ATGACCTTTAGCCGTGCTTCCACCACAAACGCCGC--TAAAGA
1 ATGACCTTTAGCGGCACTTCCACCACAAAAGCCACTATAAAGA
21809457 TCATGACCTTTAGCGGCACTTCCACCACAAACA-CCAC--TAAAGA
1 --ATGACCTTTAGCGGCACTTCCACCACAAA-AGCCACTATAAAGA
* * * **
21809500 TCATGACCTTTAGCGGCACTTCCACCACAAACGCCGCTAAAAATC
1 --ATGACCTTTAGCGGCACTTCCACCACAAAAGCCACTATAAAGA
* * * *
21809545 ATGACTTTTAGCGACGCTTCTACCACAAAAGCCACTATAAAGA
1 ATGACCTTTAGCGGCACTTCCACCACAAAAGCCACTATAAAGA
*
21809588 ATGACTTTTAGCGGC
1 ATGACCTTTAGCGGC
21809603 GCCTTTTCAC
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
43 117 0.98
45 3 0.03
ACGTcount: A:0.32, C:0.32, G:0.15, T:0.21
Consensus pattern (43 bp):
ATGACCTTTAGCGGCACTTCCACCACAAAAGCCACTATAAAGA
Found at i:21813353 original size:40 final size:39
Alignment explanation
Indices: 21813200--21813353 Score: 139
Period size: 40 Copynumber: 3.8 Consensus size: 39
21813190 AAACAGGCTT
* *
21813200 TTAGCGGCGTTTAGACAAAAAACGCCAGTAAAAATCGAGCA
1 TTAGCGGCGTTT-TA-AAAAAACGCCACTAAAAATCGAGCA
* ** * * *
21813241 TTAGCGGCGCTTTATGGAAATCGTCACTAAAGATCGAGCA
1 TTAGCGGCGTTTTA-AAAAAACGCCACTAAAAATCGAGCA
* * *
21813281 TTAGCGGTGTTTTTAAAAAAACACCGCTAAAAAT-GAGCA
1 TTAGCGGCG-TTTTAAAAAAACGCCACTAAAAATCGAGCA
*
21813320 TTAGCGGCGTTTTACAGAAAAACGCCACAAAAAA
1 TTAGCGGCGTTTTA-A-AAAAACGCCACTAAAAA
21813354 CAAAAGCCCA
Statistics
Matches: 88, Mismatches: 22, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
38 5 0.06
39 14 0.16
40 54 0.61
41 15 0.17
ACGTcount: A:0.39, C:0.19, G:0.21, T:0.21
Consensus pattern (39 bp):
TTAGCGGCGTTTTAAAAAAACGCCACTAAAAATCGAGCA
Found at i:21813498 original size:41 final size:41
Alignment explanation
Indices: 21813387--21813505 Score: 184
Period size: 41 Copynumber: 2.9 Consensus size: 41
21813377 CTTACCTTTC
* *
21813387 GGGGGCTTTAGCGGCGTTTTTGGAAAAGCACCGCTAATGTT
1 GGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGAT
*
21813428 GGGGGCTTTAGCGGCGTTTTTGTAAAAGCGCCGCTAATGAT
1 GGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGAT
* * *
21813469 GGGGGCTTTAGCAGCATTTTTGGAAAAGCGCTGCTAA
1 GGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAA
21813506 AAACTTTTTA
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 71 1.00
ACGTcount: A:0.21, C:0.17, G:0.34, T:0.29
Consensus pattern (41 bp):
GGGGGCTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGAT
Found at i:21813867 original size:15 final size:14
Alignment explanation
Indices: 21813850--21813898 Score: 62
Period size: 14 Copynumber: 3.4 Consensus size: 14
21813840 ACTATTTTAA
*
21813850 GGTTTAGGGAGTAT
1 GGTTTAGGGATTAT
*
21813864 AGGTTTAGGCATTAT
1 -GGTTTAGGGATTAT
*
21813879 GGATTAGGGATTAT
1 GGTTTAGGGATTAT
21813893 GGTTTA
1 GGTTTA
21813899 AGGGTTGAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
14 17 0.59
15 12 0.41
ACGTcount: A:0.24, C:0.02, G:0.35, T:0.39
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:21813939 original size:7 final size:7
Alignment explanation
Indices: 21813921--21813999 Score: 59
Period size: 7 Copynumber: 10.7 Consensus size: 7
21813911 TAAGGTTTAA
21813921 GGGTTAG
1 GGGTTAG
21813928 AGGGTTAG
1 -GGGTTAG
21813936 GGGTTTAG
1 GGG-TTAG
21813944 GGGTTAG
1 GGGTTAG
**
21813951 ATGTTAG
1 GGGTTAG
*
21813958 GGGTTAA
1 GGGTTAG
*
21813965 GAGTTAG
1 GGGTTAG
21813972 GGGTTTAG
1 GGG-TTAG
* *
21813980 AGTTTAG
1 GGGTTAG
*
21813987 GGATTTAG
1 GG-GTTAG
21813995 GGGTT
1 GGGTT
21814000 CAGTTAGGAT
Statistics
Matches: 56, Mismatches: 12, Indels: 7
0.75 0.16 0.09
Matches are distributed among these distances:
7 30 0.54
8 26 0.46
ACGTcount: A:0.20, C:0.00, G:0.46, T:0.34
Consensus pattern (7 bp):
GGGTTAG
Found at i:21813947 original size:15 final size:14
Alignment explanation
Indices: 21813921--21813999 Score: 59
Period size: 15 Copynumber: 5.4 Consensus size: 14
21813911 TAAGGTTTAA
21813921 GGGTTAGAGGGTTAG
1 GGGTTAG-GGGTTAG
21813936 GGGTTTAGGGGTTAG
1 GGG-TTAGGGGTTAG
** *
21813951 ATGTTAGGGGTTAA
1 GGGTTAGGGGTTAG
*
21813965 GAGTTAGGGGTTTAG
1 GGGTTAGGGG-TTAG
* * *
21813980 AGTTTAGGGATTTAG
1 GGGTTAGGG-GTTAG
21813995 GGGTT
1 GGGTT
21814000 CAGTTAGGAT
Statistics
Matches: 49, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
14 18 0.37
15 27 0.55
16 4 0.08
ACGTcount: A:0.20, C:0.00, G:0.46, T:0.34
Consensus pattern (14 bp):
GGGTTAGGGGTTAG
Found at i:21814011 original size:19 final size:19
Alignment explanation
Indices: 21813987--21814030 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
21813977 TAGAGTTTAG
*
21813987 GGATTTAGGGGTTCAGTTA
1 GGATTTAGGGGTCCAGTTA
21814006 GGATTTAGGGGTCCAGTTA
1 GGATTTAGGGGTCCAGTTA
21814025 GGATTT
1 GGATTT
21814031 TGGGCGTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.20, C:0.07, G:0.36, T:0.36
Consensus pattern (19 bp):
GGATTTAGGGGTCCAGTTA
Found at i:21814350 original size:283 final size:285
Alignment explanation
Indices: 21814036--21814678 Score: 947
Period size: 283 Copynumber: 2.3 Consensus size: 285
21814026 GATTTTGGGC
*
21814036 GTTTAGATTAA-T-TTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTGAAAGAGATAA
1 GTTTAGATTAATTATTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAA
* * *
21814099 TAATAAATTTGTTTAGGGTTTTTGGTTTAGGGTATATAATTTATTTAATATTTAAGGCCGGTTTA
66 TAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATAATTAATTTAATATTTAAGGCCAGTTTA
* * * *
21814164 GGAGTTCATATTTTAAGATTTAGGGAGTATGGA-TTAGAGATTATGGTTTAAGGGTTGGGATTTA
131 GGAGTTCACATTTTAAGATTTAAGGAGTATGGATTTAGAGATTATGGATTAAGGATTGGGATTTA
* * * **
21814228 AGGTTTAGGGGTTAAGAGTTTATGGG-T-TTAGGGGTTAGATGCATGAGGGGTTAAAAG-TTAGG
196 AGGTTTAGGGGTTAAGAGTTTAGGGGTTATTAGGGGTTAAAAG--TGAGGAATTAAAAGTTTAGG
* * *
21814290 GATTCAGTGGTCGGGTTAGGGTTTTGA
259 GATTCAGGGGTCGGGTTAAGATTTTGA
21814317 GTTTAGATTAATTATTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAA
1 GTTTAGATTAATTATTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAA
* *
21814382 TAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTTAATATTTAAGGCTAGTTTA
66 TAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATAATTAATTTAATATTTAAGGCCAGTTTA
* * *
21814447 GGAGTTCACATTTTAAGGTTTAAGGAGTATGGATTTAGGGATTATGGATTATGGATTGGGATTTA
131 GGAGTTCACATTTTAAGATTTAAGGAGTATGGATTTAGAGATTATGGATTAAGGATTGGGATTTA
* * * *
21814512 AGGTTTAGGGGTTAAGGGTTTAGGGGTTAGACGTTAGGGGTTAAAAGTTAGGAATTTAAGGTTTA
196 AGGTTTAGGGGTTAAGAGTTTAGGGGTT--A--TTAGGGGTTAAAAGTGAGGAATTAAAAGTTTA
*
21814577 GGGATTTAGGGGTCGGGTTAAGATTTTGA
257 GGGATTCAGGGGTCGGGTTAAGATTTTGA
*
21814606 GTTTAGATTAATTATTTTTTAATTTATATTTTAAATATGTTCTTGTATAATTGTAAAAGAGATAA
1 GTTTAGATTAATTATTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAA
21814671 TAATAAAT
66 TAATAAAT
21814679 CAAATATATT
Statistics
Matches: 325, Mismatches: 27, Indels: 12
0.89 0.07 0.03
Matches are distributed among these distances:
281 11 0.03
282 1 0.00
283 140 0.43
284 51 0.16
285 1 0.00
288 9 0.03
289 100 0.31
290 12 0.04
ACGTcount: A:0.30, C:0.02, G:0.24, T:0.43
Consensus pattern (285 bp):
GTTTAGATTAATTATTTTTTAATTTATATTTTAAATATGTTCTTATATAATTGTAAAAGAGATAA
TAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATAATTAATTTAATATTTAAGGCCAGTTTA
GGAGTTCACATTTTAAGATTTAAGGAGTATGGATTTAGAGATTATGGATTAAGGATTGGGATTTA
AGGTTTAGGGGTTAAGAGTTTAGGGGTTATTAGGGGTTAAAAGTGAGGAATTAAAAGTTTAGGGA
TTCAGGGGTCGGGTTAAGATTTTGA
Found at i:21814483 original size:22 final size:22
Alignment explanation
Indices: 21814458--21814503 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
21814448 GAGTTCACAT
*
21814458 TTTAAGGTTTAAGGAGTATGGA
1 TTTAAGGATTAAGGAGTATGGA
* * *
21814480 TTTAGGGATTATGGATTATGGA
1 TTTAAGGATTAAGGAGTATGGA
21814502 TT
1 TT
21814504 GGGATTTAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.41
Consensus pattern (22 bp):
TTTAAGGATTAAGGAGTATGGA
Found at i:21814533 original size:15 final size:14
Alignment explanation
Indices: 21814509--21814555 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
21814499 GGATTGGGAT
21814509 TTAAGGTTTAGGGG
1 TTAAGGTTTAGGGG
21814523 TTAAGGGTTTAGGGG
1 TTAA-GGTTTAGGGG
*
21814538 TTAGACG-TTAGGGG
1 TTA-AGGTTTAGGGG
21814552 TTAA
1 TTAA
21814556 AAGTTAGGAA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
13 1 0.03
14 14 0.47
15 14 0.47
16 1 0.03
ACGTcount: A:0.23, C:0.02, G:0.40, T:0.34
Consensus pattern (14 bp):
TTAAGGTTTAGGGG
Found at i:21814561 original size:14 final size:14
Alignment explanation
Indices: 21814516--21814563 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
21814506 GATTTAAGGT
**
21814516 TTAGGGGTTAAGGG
1 TTAGGGGTTAAAAG
* *
21814530 TTTAGGGGTTAGACG
1 -TTAGGGGTTAAAAG
21814545 TTAGGGGTTAAAAG
1 TTAGGGGTTAAAAG
21814559 TTAGG
1 TTAGG
21814564 AATTTAAGGT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 17 0.61
15 11 0.39
ACGTcount: A:0.25, C:0.02, G:0.42, T:0.31
Consensus pattern (14 bp):
TTAGGGGTTAAAAG
Found at i:21815165 original size:109 final size:96
Alignment explanation
Indices: 21815045--21815332 Score: 369
Period size: 96 Copynumber: 2.9 Consensus size: 96
21815035 ATTTTATAAA
** * *
21815045 AAATCAATTTATAAAAAACAAAATAAAATTTTTTTAGCGTAGCAAAACGGTGTCATTTTGTTCAA
1 AAATCAATTTATAAAAAACAAAATAAAAAATTTTTAGCATAGCAAAACGGCGTCATTTTGTTCAA
* *
21815110 AATGAAATATTTTTTTGCGGAAAATATAAAAACGCCGCAAAAAT
66 AATGAAATAATTTTTTGC-G--------AAAA---C-AAAAAAT
* * *
21815154 AAATCAATTTATAAAATACAAAATAAAAAAATTTTAGCATAACAAAACGGCGTCATTTTGTTCAA
1 AAATCAATTTATAAAAAACAAAATAAAAAATTTTTAGCATAGCAAAACGGCGTCATTTTGTTCAA
*
21815219 AATGAAATAATTTTTTGCGCAAACAAAAAAT
66 AATGAAATAATTTTTTGCGAAAACAAAAAAT
21815250 AAATCAATTTATAAAAAACAAAATAAAAAATTTTTAGCATAGCAAAACGGCGTCATTTTGTTCAA
1 AAATCAATTTATAAAAAACAAAATAAAAAATTTTTAGCATAGCAAAACGGCGTCATTTTGTTCAA
21815315 AATGAAATAATTTTTTGC
66 AATGAAATAATTTTTTGC
21815333 AGCGTTTTTA
Statistics
Matches: 166, Mismatches: 13, Indels: 13
0.86 0.07 0.07
Matches are distributed among these distances:
96 86 0.52
97 1 0.01
100 3 0.02
108 1 0.01
109 75 0.45
ACGTcount: A:0.48, C:0.11, G:0.10, T:0.31
Consensus pattern (96 bp):
AAATCAATTTATAAAAAACAAAATAAAAAATTTTTAGCATAGCAAAACGGCGTCATTTTGTTCAA
AATGAAATAATTTTTTGCGAAAACAAAAAAT
Found at i:21815227 original size:49 final size:49
Alignment explanation
Indices: 21815174--21815324 Score: 121
Period size: 49 Copynumber: 3.1 Consensus size: 49
21815164 ATAAAATACA
*
21815174 AAATAAAAAAATTTTAGCATAACAAAACGGCGTCATTTTGTTCAAAATG
1 AAATAAAAAATTTTTAGCATAACAAAACGGCGTCATTTTGTTCAAAATG
* * ***** * * ** **
21815223 AAAT---AATTTTTTGCGCA-AACAAAAAATAAATCAATTTATAAAAAACA
1 AAATAAAAAATTTTT-AGCATAAC-AAAACGGCGTCATTTTGTTCAAAATG
*
21815270 AAATAAAAAATTTTTAGCATAGCAAAACGGCGTCATTTTGTTCAAAATG
1 AAATAAAAAATTTTTAGCATAACAAAACGGCGTCATTTTGTTCAAAATG
21815319 AAATAA
1 AAATAA
21815325 TTTTTTGCAG
Statistics
Matches: 68, Mismatches: 28, Indels: 12
0.63 0.26 0.11
Matches are distributed among these distances:
46 9 0.13
47 22 0.32
49 28 0.41
50 9 0.13
ACGTcount: A:0.50, C:0.11, G:0.10, T:0.28
Consensus pattern (49 bp):
AAATAAAAAATTTTTAGCATAACAAAACGGCGTCATTTTGTTCAAAATG
Found at i:21815526 original size:107 final size:108
Alignment explanation
Indices: 21815380--21815574 Score: 313
Period size: 107 Copynumber: 1.8 Consensus size: 108
21815370 AAAACGCCGT
* *
21815380 AAAAAATAAATCAATTTATAAAAAACAAAATAAAAATTTTT-TGATAAGAAGAATGGCATCATTT
1 AAAAAATAAATCAATTTATAAAAAACAAAATAAAAATTTTTATCATAAG-AGAACGGCATCATTT
*
21815444 TGTTCAAAATGAAATAATTTTTTGCACATAAAAACGCCGCAAAC
65 TATTCAAAATGAAATAATTTTTTGCACATAAAAACGCCGCAAAC
* * *
21815488 AAAAAATAAATCAATTTAT-AAAAATAAAATAAAAATTTTTATCATAAGAGAACGGCGTTATTTT
1 AAAAAATAAATCAATTTATAAAAAACAAAATAAAAATTTTTATCATAAGAGAACGGCATCATTTT
21815552 ATTCAAAATGAAATAATTTTTTG
66 ATTCAAAATGAAATAATTTTTTG
21815575 GGACGTTTTT
Statistics
Matches: 80, Mismatches: 6, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
107 55 0.69
108 25 0.31
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.32
Consensus pattern (108 bp):
AAAAAATAAATCAATTTATAAAAAACAAAATAAAAATTTTTATCATAAGAGAACGGCATCATTTT
ATTCAAAATGAAATAATTTTTTGCACATAAAAACGCCGCAAAC
Found at i:21819898 original size:43 final size:43
Alignment explanation
Indices: 21819827--21820136 Score: 306
Period size: 43 Copynumber: 7.3 Consensus size: 43
21819817 GATATGTTTT
* * * *
21819827 TAGCGGCGTTTGTGGGAAAAGCGTCGCTAGAGGTTTTGATCTA
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * * *
21819870 TAGTGGCGTTTGTGGGAAATGTGCCGCTAAAGGTCTTGATTTA
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGATCTA
* ** * *
21819913 TAGCGGCGTTTGTGG-GAAATTGCCGCTAAAGATCTTGAGCTA
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * *
21819955 TAGCGGTGTTTTTGTAAAAAGCGCCGGTAAAGGT-TCTGATCTA
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCT-TGATCTA
* * * *
21819998 TAGCGGCATTTGT-GAAAAA-CTGTCGCTAAAAGTCATGATCTA
1 TAGCGGCGTTTGTGGAAAAAGC-GCCGCTAAAGGTCTTGATCTA
**
21820040 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCCCGATCTA
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * *
21820083 TAGCGGCGTTTGTTGTATAAGCGCCGCTAAAGGTCATGA-CTTA
1 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGATC-TA
21820126 TAGCGGCGTTT
1 TAGCGGCGTTT
21820137 TTTGAAATAA
Statistics
Matches: 219, Mismatches: 41, Indels: 14
0.80 0.15 0.05
Matches are distributed among these distances:
41 1 0.00
42 68 0.31
43 149 0.68
44 1 0.00
ACGTcount: A:0.24, C:0.16, G:0.30, T:0.30
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGATCTA
Found at i:21820000 original size:85 final size:85
Alignment explanation
Indices: 21819867--21820136 Score: 278
Period size: 85 Copynumber: 3.2 Consensus size: 85
21819857 AGGTTTTGAT
* * * * * **
21819867 CTATAGTGGCGTTTGTGGGAAATGTGCCGCTAAAGG-TCTTGATTTATAGCGGCGTTTGTGGGAA
1 CTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTTC-TGATCTATAGCGGCGTTTGTGAAAA
* *
21819931 ATTGCCGCT-AAAGATCTTGAG
65 ACTGCCGCTAAAAG-TCATGAG
* * * * *
21819952 CTATAGCGGTGTTTTTGTAAAAAGCGCCGGTAAAGGTTCTGATCTATAGCGGCATTTGTGAAAAA
1 CTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTTCTGATCTATAGCGGCGTTTGTGAAAAA
* *
21820017 CTGTCGCTAAAAGTCATGAT
66 CTGCCGCTAAAAGTCATGAG
* * *
21820037 CTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCCCGATCTATAGCGGCGTTTGTTGTATA
1 CTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTTCTGATCTATAGCGGCGTTTG-TG-AAA
* *
21820102 AGC-GCCGCTAAAGGTCATGA-
64 AACTGCCGCTAAAAGTCATGAG
21820122 CTTATAGCGGCGTTT
1 C-TATAGCGGCGTTT
21820137 TTTGAAATAA
Statistics
Matches: 153, Mismatches: 27, Indels: 9
0.81 0.14 0.05
Matches are distributed among these distances:
85 113 0.74
86 36 0.24
87 4 0.03
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (85 bp):
CTATAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTTCTGATCTATAGCGGCGTTTGTGAAAAA
CTGCCGCTAAAAGTCATGAG
Done.