Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 77 of 170
Found at i:23469140 original size:250 final size:250
Alignment explanation
Indices: 23468699--23469216 Score: 822
Period size: 250 Copynumber: 2.1 Consensus size: 250
23468689 CCACATGTAT
* *
23468699 GCGCTTTTGCTACAGTAGGTCTTGGAAAAATAATTTCGAGTTGACGTTTCTGAACAAATAGTATA
1 GCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAACAAATAGTATA
* * * *
23468764 AAAAACGCTTCAAGCAGGATGCTATATGCGAAGAATTTGTGAAATCGCACCCTCCTGGATGCGCT
66 AAAAACGCTTCAAGCAGGATGCTATATGAGAAGAATTTCTAAAATCGCACCCTCCTGGACGCGCT
23468829 TTTGCTACAATTGGTCCTGGAAGAAATAATTTCGAGTTGACATTTCTAAGCAAATAGTATAAAAT
131 TTTGCTACAATTGGTCCTGGAAGAAATAATTTCGAGTTGACATTTCTAAGCAAATAGTATAAAAT
* * *
23468894 CTCTTCTACCAGGATCCTTTATGAGAAGAATTTGTGAAATCGAGCCCACGTGGAC
196 CGCTTCTACCAGGATACTTTATGAGAAGAATTTATGAAATCGAGCCCACGTGGAC
* * *
23468949 GCGCTTTTGCTATAGTAGGTCCTGAAAAAATTATTTCGAGTTGACGTTTCTGAGCAAATAGTATA
1 GCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAACAAATAGTATA
* * ** *
23469014 AAAAACGCTTTAAGCAGGATGCTATTTGAGAAGAATTTCTAAAATCGTGCCCTCGTGGACGCGCT
66 AAAAACGCTTCAAGCAGGATGCTATATGAGAAGAATTTCTAAAATCGCACCCTCCTGGACGCGCT
* * *
23469079 TTTGCTATAGTTGGTCCTGGAAGAAATAATTTCGAGTTGA-AGTTTCTGAGCAAATAGTATAAAA
131 TTTGCTACAATTGGTCCTGGAAGAAATAATTTCGAGTTGACA-TTTCTAAGCAAATAGTATAAAA
* *
23469143 TCGCTTCTAGCAGGATACTTTATGAGAAGAATTTATGAAATCGCGCCCACGTGGAC
195 TCGCTTCTACCAGGATACTTTATGAGAAGAATTTATGAAATCGAGCCCACGTGGAC
23469199 GCGCTTTTGCTACAGTAG
1 GCGCTTTTGCTACAGTAG
23469217 CATGTTTGGG
Statistics
Matches: 244, Mismatches: 23, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
249 1 0.00
250 243 1.00
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Consensus pattern (250 bp):
GCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGACGTTTCTGAACAAATAGTATA
AAAAACGCTTCAAGCAGGATGCTATATGAGAAGAATTTCTAAAATCGCACCCTCCTGGACGCGCT
TTTGCTACAATTGGTCCTGGAAGAAATAATTTCGAGTTGACATTTCTAAGCAAATAGTATAAAAT
CGCTTCTACCAGGATACTTTATGAGAAGAATTTATGAAATCGAGCCCACGTGGAC
Found at i:23472421 original size:15 final size:15
Alignment explanation
Indices: 23472376--23472435 Score: 61
Period size: 14 Copynumber: 4.1 Consensus size: 15
23472366 TATATTTAAC
*
23472376 TTAAGGGTTAGGGTT
1 TTAAGGTTTAGGGTT
* *
23472391 TTAAAG-TTAAGGTT
1 TTAAGGTTTAGGGTT
*
23472405 TTAAGGTTTATGGTTT
1 TTAAGGTTTA-GGGTT
23472421 TTAA-GTTTAGGGTT
1 TTAAGGTTTAGGGTT
23472435 T
1 T
23472436 ATAGTTTTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
14 17 0.46
15 13 0.35
16 7 0.19
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.48
Consensus pattern (15 bp):
TTAAGGTTTAGGGTT
Found at i:23472424 original size:16 final size:15
Alignment explanation
Indices: 23472383--23472435 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
23472373 AACTTAAGGG
*
23472383 TTAGGGTTTTAAAG-
1 TTAGGGTTTTTAAGT
*
23472397 TTAAGG-TTTTAAGGT
1 TTAGGGTTTTTAA-GT
*
23472412 TTATGGTTTTTAAGT
1 TTAGGGTTTTTAAGT
23472427 TTAGGGTTT
1 TTAGGGTTT
23472436 ATAGTTTTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
13 5 0.16
14 6 0.19
15 15 0.47
16 6 0.19
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (15 bp):
TTAGGGTTTTTAAGT
Found at i:23472429 original size:22 final size:22
Alignment explanation
Indices: 23472404--23472695 Score: 241
Period size: 22 Copynumber: 13.7 Consensus size: 22
23472394 AAGTTAAGGT
23472404 TTTAAGGTTTATGGTTTTTAAG
1 TTTAAGGTTTATGGTTTTTAAG
* *
23472426 TTTAGGGTTTATAGTTTTTAAG
1 TTTAAGGTTTATGGTTTTTAAG
* *
23472448 TTTAGGGTTTGTGGTTTTTAAG
1 TTTAAGGTTTATGGTTTTTAAG
*
23472470 TTTAAGGTTTATGGTTTTTAGG
1 TTTAAGGTTTATGGTTTTTAAG
* *
23472492 TTTAGGGTTTGTGGTTTTTAAG
1 TTTAAGGTTTATGGTTTTTAAG
* *
23472514 -TTAAGGGTTAGGGTTTTTAAG
1 TTTAAGGTTTATGGTTTTTAAG
** **
23472535 TTT-AGGGGT-TGGGGTTT---
1 TTTAAGGTTTATGGTTTTTAAG
*
23472552 TTTAA-GTTTAGGGTTTTTAGA-
1 TTTAAGGTTTATGGTTTTTA-AG
** **
23472573 TTTGGGGTTTGGGGTTTTTAAG
1 TTTAAGGTTTATGGTTTTTAAG
*
23472595 TTTAGGGTTTATGGTTTTTAAG
1 TTTAAGGTTTATGGTTTTTAAG
* *
23472617 TTTAAGGTTT-GGGGTTTTAAG
1 TTTAAGGTTTATGGTTTTTAAG
*
23472638 -TTAAGGGTTA-GCGTTTTTAA-
1 TTTAAGGTTTATG-GTTTTTAAG
* * *
23472658 TTTAAGGGTTAGGGTTTCT-AG
1 TTTAAGGTTTATGGTTTTTAAG
23472679 TTTAAGGGTTTATGGTT
1 TTTAA-GGTTTATGGTT
23472696 CGTCAATTAA
Statistics
Matches: 219, Mismatches: 37, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
17 5 0.02
18 6 0.03
20 15 0.07
21 62 0.28
22 131 0.60
ACGTcount: A:0.18, C:0.01, G:0.30, T:0.51
Consensus pattern (22 bp):
TTTAAGGTTTATGGTTTTTAAG
Found at i:23472442 original size:29 final size:29
Alignment explanation
Indices: 23472376--23472436 Score: 77
Period size: 29 Copynumber: 2.1 Consensus size: 29
23472366 TATATTTAAC
* * *
23472376 TTAAGGGTTAGGGTTTTAAAGTTAAGGTT
1 TTAAGGTTTATGGTTTTAAAGTTAAGGGT
* *
23472405 TTAAGGTTTATGGTTTTTAAGTTTAGGGT
1 TTAAGGTTTATGGTTTTAAAGTTAAGGGT
23472434 TTA
1 TTA
23472437 TAGTTTTTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.48
Consensus pattern (29 bp):
TTAAGGTTTATGGTTTTAAAGTTAAGGGT
Found at i:23472454 original size:66 final size:66
Alignment explanation
Indices: 23472383--23472522 Score: 176
Period size: 66 Copynumber: 2.1 Consensus size: 66
23472373 AACTTAAGGG
23472383 TTAGGGTTT-T-AAAGTTAAGGTTTTAAGGTTTATGGTTTTTAAGTTTAGGGTTTATAGTTTTTA
1 TTAGGGTTTGTGAAAGTTAA-G-TTTAAGGTTTATGGTTTTTAAGTTTAGGGTTTATAGTTTTTA
23472446 AGT
64 AGT
**** * * *
23472449 TTAGGGTTTGTGGTTTTTAAGTTTAAGGTTTATGGTTTTTAGGTTTAGGGTTTGTGGTTTTTAAG
1 TTAGGGTTTGTGAAAGTTAAGTTTAAGGTTTATGGTTTTTAAGTTTAGGGTTTATAGTTTTTAAG
23472514 T
66 T
*
23472515 TAAGGGTT
1 TTAGGGTT
23472523 AGGGTTTTTA
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
66 58 0.91
67 2 0.03
68 4 0.06
ACGTcount: A:0.20, C:0.00, G:0.28, T:0.52
Consensus pattern (66 bp):
TTAGGGTTTGTGAAAGTTAAGTTTAAGGTTTATGGTTTTTAAGTTTAGGGTTTATAGTTTTTAAG
T
Found at i:23472457 original size:44 final size:44
Alignment explanation
Indices: 23472416--23472695 Score: 293
Period size: 44 Copynumber: 6.6 Consensus size: 44
23472406 TAAGGTTTAT
* *
23472416 GGTTTTTAAGTTTAGGGTTTATAGTTTTTAAGTTTAGGGTTTGT
1 GGTTTTTAAGTTTAGGGTTTATGGTTTTTAAGTTTAGGGTTTGG
* * *
23472460 GGTTTTTAAGTTTAAGGTTTATGGTTTTTAGGTTTAGGGTTTGT
1 GGTTTTTAAGTTTAGGGTTTATGGTTTTTAAGTTTAGGGTTTGG
* * *
23472504 GGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTTAGGGGTTGG
1 GGTTTTTAAGTTTAGGGTTTATGGTTTTTAAGTTTAGGGTTTGG
*
23472547 GGTTTTTTAAGTTTA--G-----GGTTTTT-AGATTTGGGGTTTGG
1 GG-TTTTTAAGTTTAGGGTTTATGGTTTTTAAG-TTTAGGGTTTGG
*
23472585 GGTTTTTAAGTTTAGGGTTTATGGTTTTTAAGTTTAAGGTTTGG
1 GGTTTTTAAGTTTAGGGTTTATGGTTTTTAAGTTTAGGGTTTGG
* *
23472629 GG-TTTTAAGTTAAGGG-TTA-GCGTTTTTAA-TTTAAGGG-TTAG
1 GGTTTTTAAGTTTAGGGTTTATG-GTTTTTAAGTTT-AGGGTTTGG
*
23472670 GGTTTCT-AGTTTAAGGGTTTATGGTT
1 GGTTTTTAAGTTT-AGGGTTTATGGTT
23472696 CGTCAATTAA
Statistics
Matches: 201, Mismatches: 19, Indels: 33
0.79 0.08 0.13
Matches are distributed among these distances:
37 14 0.07
38 19 0.09
39 1 0.00
41 13 0.06
42 22 0.11
43 43 0.21
44 87 0.43
45 2 0.01
ACGTcount: A:0.18, C:0.01, G:0.31, T:0.50
Consensus pattern (44 bp):
GGTTTTTAAGTTTAGGGTTTATGGTTTTTAAGTTTAGGGTTTGG
Found at i:23472729 original size:7 final size:7
Alignment explanation
Indices: 23472717--23472755 Score: 78
Period size: 7 Copynumber: 5.6 Consensus size: 7
23472707 TTATGCATTT
23472717 AATTATA
1 AATTATA
23472724 AATTATA
1 AATTATA
23472731 AATTATA
1 AATTATA
23472738 AATTATA
1 AATTATA
23472745 AATTATA
1 AATTATA
23472752 AATT
1 AATT
23472756 TTTAATAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 32 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (7 bp):
AATTATA
Found at i:23473007 original size:21 final size:21
Alignment explanation
Indices: 23472964--23473010 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
23472954 GCGATAGTTG
* *
23472964 TGGTTCTTCCGGCGGGGATTC
1 TGGTTCTTCCGGAGGGCATTC
23472985 TGGTTCTTCCGGTAGGGCA-TC
1 TGGTTCTTCCGG-AGGGCATTC
23473006 TGGTT
1 TGGTT
23473011 GTCGGAGTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 19 0.83
22 4 0.17
ACGTcount: A:0.06, C:0.21, G:0.36, T:0.36
Consensus pattern (21 bp):
TGGTTCTTCCGGAGGGCATTC
Found at i:23475199 original size:11 final size:11
Alignment explanation
Indices: 23475183--23475249 Score: 82
Period size: 11 Copynumber: 6.0 Consensus size: 11
23475173 ATTAAATATG
23475183 AATTTGAGAGA
1 AATTTGAGAGA
*
23475194 AATTTG-GAAGG
1 AATTTGAG-AGA
*
23475205 AATTTGAGAGG
1 AATTTGAGAGA
23475216 AATTTGAGAGA
1 AATTTGAGAGA
*
23475227 AAATTGAGAGGA
1 AATTTGAGA-GA
23475239 AATTTGAGAGA
1 AATTTGAGAGA
23475250 GGATTTGTTT
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
10 1 0.02
11 37 0.76
12 11 0.22
ACGTcount: A:0.43, C:0.00, G:0.31, T:0.25
Consensus pattern (11 bp):
AATTTGAGAGA
Found at i:23475207 original size:22 final size:23
Alignment explanation
Indices: 23475182--23475256 Score: 84
Period size: 22 Copynumber: 3.3 Consensus size: 23
23475172 GATTAAATAT
23475182 GAATTTGAGAGAAATTTGGA-AG
1 GAATTTGAGAGAAATTTGGAGAG
*
23475204 GAATTTGAGAGGAATTT-GAGAG
1 GAATTTGAGAGAAATTTGGAGAG
* *
23475226 AAAATTGAGAGGAAATTTGAGAGAG
1 GAATTTGAGA-GAAATTTG-GAGAG
23475251 G-ATTTG
1 GAATTTG
23475257 TTTGTGAAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
21 2 0.05
22 26 0.60
23 6 0.14
24 4 0.09
25 5 0.12
ACGTcount: A:0.40, C:0.00, G:0.33, T:0.27
Consensus pattern (23 bp):
GAATTTGAGAGAAATTTGGAGAG
Found at i:23475219 original size:33 final size:34
Alignment explanation
Indices: 23475182--23475248 Score: 102
Period size: 33 Copynumber: 2.0 Consensus size: 34
23475172 GATTAAATAT
*
23475182 GAATTTGAGAGAAATTTG-GAAGG-AATTTGAGAG
1 GAATTTGAGAGAAAATTGAG-AGGAAATTTGAGAG
23475215 GAATTTGAGAGAAAATTGAGAGGAAATTTGAGAG
1 GAATTTGAGAGAAAATTGAGAGGAAATTTGAGAG
23475249 AGGATTTGTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
33 20 0.65
34 11 0.35
ACGTcount: A:0.42, C:0.00, G:0.33, T:0.25
Consensus pattern (34 bp):
GAATTTGAGAGAAAATTGAGAGGAAATTTGAGAG
Found at i:23475255 original size:12 final size:12
Alignment explanation
Indices: 23475182--23475256 Score: 72
Period size: 11 Copynumber: 6.6 Consensus size: 12
23475172 GATTAAATAT
23475182 GAATTTGAGAGA
1 GAATTTGAGAGA
23475194 -AATTTG-GA-A
1 GAATTTGAGAGA
23475203 GGAATTTGAGAG-
1 -GAATTTGAGAGA
23475215 GAATTTGAGAGA
1 GAATTTGAGAGA
*
23475227 -AAATTGAGAG-
1 GAATTTGAGAGA
23475237 GAAATTTGAGAGA
1 G-AATTTGAGAGA
*
23475250 GGATTTG
1 GAATTTG
23475257 TTTGTGAAAA
Statistics
Matches: 52, Mismatches: 3, Indels: 16
0.73 0.04 0.23
Matches are distributed among these distances:
9 1 0.02
10 2 0.04
11 32 0.62
12 16 0.31
13 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.33, T:0.27
Consensus pattern (12 bp):
GAATTTGAGAGA
Found at i:23478878 original size:13 final size:13
Alignment explanation
Indices: 23478862--23478892 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
23478852 CAGAGCACTG
23478862 TTTCTCTTCCCGA
1 TTTCTCTTCCCGA
23478875 TTTCTCTTCCCGA
1 TTTCTCTTCCCGA
23478888 TTTCT
1 TTTCT
23478893 TGCACCTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.35, G:0.06, T:0.52
Consensus pattern (13 bp):
TTTCTCTTCCCGA
Found at i:23481025 original size:20 final size:20
Alignment explanation
Indices: 23480989--23481027 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
23480979 TAATTTTTAA
*
23480989 AAATATATTTATAATATAAT
1 AAATATATTAATAATATAAT
23481009 AAATATA-TAATACATATAA
1 AAATATATTAATA-ATATAA
23481028 ATTTAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (20 bp):
AAATATATTAATAATATAAT
Found at i:23484728 original size:26 final size:24
Alignment explanation
Indices: 23484693--23484744 Score: 68
Period size: 26 Copynumber: 2.1 Consensus size: 24
23484683 ACATTTTATG
23484693 AAATTATATTTAATAATAATTATTTT
1 AAATTATATTTAATAAT-A-TATTTT
* *
23484719 AAATTGTATTTAATCATATATTTT
1 AAATTATATTTAATAATATATTTT
23484743 AA
1 AA
23484745 TTAAAATATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 8 0.33
25 1 0.04
26 15 0.62
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (24 bp):
AAATTATATTTAATAATATATTTT
Found at i:23484851 original size:18 final size:17
Alignment explanation
Indices: 23484823--23484857 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23484813 ATTATTAAGA
*
23484823 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
23484840 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
23484858 TTAATAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:23484857 original size:16 final size:16
Alignment explanation
Indices: 23484823--23484877 Score: 53
Period size: 16 Copynumber: 3.4 Consensus size: 16
23484813 ATTATTAAGA
23484823 ATTTT-ATTAAATTATAT
1 ATTTTAATTAAA--ATAT
23484840 ATTTTAATTAAAATAT
1 ATTTTAATTAAAATAT
*
23484856 A-TTTAA-TAAAAAAT
1 ATTTTAATTAAAATAT
23484870 ATGTTTAA
1 AT-TTTAA
23484878 ATATGATTAA
Statistics
Matches: 34, Mismatches: 1, Indels: 7
0.81 0.02 0.17
Matches are distributed among these distances:
14 8 0.24
15 5 0.15
16 10 0.29
17 5 0.15
18 6 0.18
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (16 bp):
ATTTTAATTAAAATAT
Found at i:23485007 original size:18 final size:17
Alignment explanation
Indices: 23484979--23485013 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
23484969 AATTATAAGA
*
23484979 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
23484996 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
23485014 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:23485121 original size:156 final size:157
Alignment explanation
Indices: 23484811--23485126 Score: 580
Period size: 156 Copynumber: 2.0 Consensus size: 157
23484801 ATAAGAATAT
23484811 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAAATATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAAATATGTTT
* *
23484876 AAATATGATTAAATTATTTATTATTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
23484941 TAATCATTTACCAAAACAAATTTATGC
131 TAATCATTTACCAAAACAAATTTATGC
* *
23484968 TAATTA-TAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTT
1 TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAAATATGTTT
23485032 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
66 AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
*
23485097 TAATCATTTACCAAAACAATTTTATGC
131 TAATCATTTACCAAAACAAATTTATGC
23485124 TAA
1 TAA
23485127 GGGTATTCTA
Statistics
Matches: 154, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
156 148 0.96
157 6 0.04
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (157 bp):
TAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAAAAAATATGTTT
AAATATGATTAAAATATTTATTACTGATAATAATAATCTTATTAAAATTTAAATAACAATAACAA
TAATCATTTACCAAAACAAATTTATGC
Found at i:23485243 original size:44 final size:45
Alignment explanation
Indices: 23485178--23485263 Score: 120
Period size: 44 Copynumber: 1.9 Consensus size: 45
23485168 ACCTCTATTC
* *
23485178 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTT
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCATTT
***
23485222 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCA
23485264 ATACAGCGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
44 19 0.53
45 17 0.47
ACGTcount: A:0.35, C:0.29, G:0.07, T:0.29
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCATTT
Found at i:23487902 original size:10 final size:10
Alignment explanation
Indices: 23487887--23487911 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
23487877 GTGGATTGGC
23487887 TGATTGACTG
1 TGATTGACTG
23487897 TGATTGACTG
1 TGATTGACTG
23487907 TGATT
1 TGATT
23487912 CCTTTGTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.08, G:0.28, T:0.44
Consensus pattern (10 bp):
TGATTGACTG
Found at i:23491070 original size:49 final size:49
Alignment explanation
Indices: 23491013--23491116 Score: 136
Period size: 49 Copynumber: 2.1 Consensus size: 49
23491003 TCATGTGTTA
* * ** * *
23491013 TAATTTTATACAGTCTTGAGTTTTTTATTCATGATATTGAACTCAATTT
1 TAATTTTATAAAGTCTTCACCTTTTGATTCATGATATTAAACTCAATTT
* *
23491062 TAATTTTATAAAGTGTTCACCTTTTGATTCATGATATTAAACTTAATTT
1 TAATTTTATAAAGTCTTCACCTTTTGATTCATGATATTAAACTCAATTT
23491111 TAATTT
1 TAATTT
23491117 GTTTTTTTTC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.31, C:0.10, G:0.09, T:0.51
Consensus pattern (49 bp):
TAATTTTATAAAGTCTTCACCTTTTGATTCATGATATTAAACTCAATTT
Found at i:23492567 original size:26 final size:28
Alignment explanation
Indices: 23492513--23492576 Score: 87
Period size: 26 Copynumber: 2.4 Consensus size: 28
23492503 TAAGAATAAG
* * *
23492513 AATTTTATTTAATTATTTATTATTATTA
1 AATTATATTTAATTAATAATTATTATTA
23492541 AATTATATTTAA-TAATAATTATT-TTA
1 AATTATATTTAATTAATAATTATTATTA
23492567 AATTATATTT
1 AATTATATTT
23492577 TAGTATTATA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 13 0.39
27 9 0.27
28 11 0.33
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (28 bp):
AATTATATTTAATTAATAATTATTATTA
Found at i:23492670 original size:15 final size:17
Alignment explanation
Indices: 23492632--23492665 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
23492622 TTTATTAACA
23492632 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
23492649 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
23492666 TTTATAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:23492679 original size:16 final size:15
Alignment explanation
Indices: 23492632--23492679 Score: 51
Period size: 15 Copynumber: 3.0 Consensus size: 15
23492622 TTTATTAACA
*
23492632 ATTTTATTAAATTATAT
1 ATTTTA-TAAAAT-TAT
*
23492649 ATTTTATTAAATTAT
1 ATTTTATAAAATTAT
23492664 ATTTTATAACAATTAT
1 ATTTTATAA-AATTAT
23492680 GTTAAAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
15 11 0.41
16 10 0.37
17 6 0.22
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (15 bp):
ATTTTATAAAATTAT
Found at i:23492868 original size:39 final size:41
Alignment explanation
Indices: 23492814--23492917 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 41
23492804 TCCTTATGCT
* *
23492814 ATTACACCTCTATTCCATTCAACCAAACACAAGAA-TA-CC
1 ATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTATCC
*
23492853 ATTACGCCTCTATTCCATTACATTCAACCAAACAAAAGAATTATCT
1 ATTACGCCTCTATT-C----CATTCAACCAAACAAAAGAATTATCC
*
23492899 ATTATGCCTCTATTCCATT
1 ATTACGCCTCTATTCCATT
23492918 ACGCCTCTAT
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
39 13 0.24
40 1 0.02
41 4 0.07
44 19 0.35
45 3 0.06
46 14 0.26
ACGTcount: A:0.37, C:0.29, G:0.04, T:0.31
Consensus pattern (41 bp):
ATTACGCCTCTATTCCATTCAACCAAACAAAAGAATTATCC
Found at i:23492892 original size:44 final size:46
Alignment explanation
Indices: 23492829--23492919 Score: 141
Period size: 46 Copynumber: 2.0 Consensus size: 46
23492819 ACCTCTATTC
*
23492829 CATTCAACCAAACACAAGAA-TA-CCATTACGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTATCCATTACGCCTCTATTCCATTA
* *
23492873 CATTCAACCAAACAAAAGAATTATCTATTATGCCTCTATTCCATTA
1 CATTCAACCAAACAAAAGAATTATCCATTACGCCTCTATTCCATTA
23492919 C
1 C
23492920 GCCTCTATTC
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
44 19 0.45
45 2 0.05
46 21 0.50
ACGTcount: A:0.38, C:0.29, G:0.04, T:0.29
Consensus pattern (46 bp):
CATTCAACCAAACAAAAGAATTATCCATTACGCCTCTATTCCATTA
Found at i:23492923 original size:16 final size:16
Alignment explanation
Indices: 23492899--23492935 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
23492889 AGAATTATCT
*
23492899 ATTATGCCTCTATTCC
1 ATTACGCCTCTATTCC
*
23492915 ATTACGCCTCTATTCT
1 ATTACGCCTCTATTCC
23492931 ATTAC
1 ATTAC
23492936 AGCGAACCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.22, C:0.30, G:0.05, T:0.43
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:23494130 original size:18 final size:17
Alignment explanation
Indices: 23494098--23494136 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
23494088 ATTTTTATAA
23494098 TTTTTTAAAAATATTGAT
1 TTTTTTAAAAATATTG-T
**
23494116 TTTTTTAAATCTATTGT
1 TTTTTTAAAAATATTGT
23494133 TTTT
1 TTTT
23494137 ATGTTTAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.28, C:0.03, G:0.05, T:0.64
Consensus pattern (17 bp):
TTTTTTAAAAATATTGT
Found at i:23494957 original size:3 final size:3
Alignment explanation
Indices: 23494951--23494979 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
23494941 ACTACTTCTT
23494951 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
23494980 GATAACTGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:23495404 original size:22 final size:22
Alignment explanation
Indices: 23495378--23495427 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
23495368 ACAAATCCTA
*
23495378 TCTCAATTTCCTTCCAAAATTC
1 TCTCAATTTCCTTCCAAAATCC
23495400 TCTCAATTTCCTTCCAAAATCC
1 TCTCAATTTCCTTCCAAAATCC
23495422 TCTCAA
1 TCTCAA
23495428 ACTCTCAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.28, C:0.34, G:0.00, T:0.38
Consensus pattern (22 bp):
TCTCAATTTCCTTCCAAAATCC
Found at i:23495435 original size:30 final size:30
Alignment explanation
Indices: 23495399--23495457 Score: 109
Period size: 30 Copynumber: 2.0 Consensus size: 30
23495389 TTCCAAAATT
23495399 CTCTCAATTTCCTTCCAAAATCCTCTCAAA
1 CTCTCAATTTCCTTCCAAAATCCTCTCAAA
*
23495429 CTCTCAATTTCCTTCCAAAATCCTTTCAA
1 CTCTCAATTTCCTTCCAAAATCCTCTCAA
23495458 TTTCCTTCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.29, C:0.36, G:0.00, T:0.36
Consensus pattern (30 bp):
CTCTCAATTTCCTTCCAAAATCCTCTCAAA
Found at i:23495550 original size:30 final size:30
Alignment explanation
Indices: 23495514--23495578 Score: 121
Period size: 30 Copynumber: 2.2 Consensus size: 30
23495504 CTCAATTTCA
23495514 TTTTTTAAAATAATTTTAAATTTTTTTTAT
1 TTTTTTAAAATAATTTTAAATTTTTTTTAT
23495544 TTTTTTAAAATAATTTTAAATTTTTTTTAT
1 TTTTTTAAAATAATTTTAAATTTTTTTTAT
*
23495574 ATTTT
1 TTTTT
23495579 CATCAATGGC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (30 bp):
TTTTTTAAAATAATTTTAAATTTTTTTTAT
Found at i:23496672 original size:7 final size:7
Alignment explanation
Indices: 23496660--23496698 Score: 60
Period size: 7 Copynumber: 5.6 Consensus size: 7
23496650 AGTGGATTGA
23496660 TATTTAG
1 TATTTAG
23496667 TATTTAG
1 TATTTAG
23496674 TATTTAG
1 TATTTAG
*
23496681 TATTTTG
1 TATTTAG
*
23496688 TATTTTG
1 TATTTAG
23496695 TATT
1 TATT
23496699 ATGTATATAA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.13, T:0.64
Consensus pattern (7 bp):
TATTTAG
Found at i:23496703 original size:7 final size:7
Alignment explanation
Indices: 23496660--23496704 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
23496650 AGTGGATTGA
*
23496660 TATTTAG
1 TATTTTG
*
23496667 TATTTAG
1 TATTTTG
*
23496674 TATTTAG
1 TATTTTG
23496681 TATTTTG
1 TATTTTG
23496688 TATTTTG
1 TATTTTG
*
23496695 TATTATG
1 TATTTTG
23496702 TAT
1 TAT
23496705 ATAACTAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
7 36 1.00
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.62
Consensus pattern (7 bp):
TATTTTG
Found at i:23497990 original size:29 final size:29
Alignment explanation
Indices: 23497905--23498321 Score: 573
Period size: 29 Copynumber: 13.9 Consensus size: 29
23497895 TAAAAAAAAT
*
23497905 CCTAATTTAATTAAAAACCCTAAACACTAA
1 CCTAATTTAATTAAAAACCCT-AACCCTAA
23497935 CCTAATTTAATTAAAAACCCTAAACCCTAA
1 CCTAATTTAATTAAAAACCCT-AACCCTAA
23497965 CCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
23497994 CCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
* ** ****
23498023 CCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAA
1 -CCTAA---T---TTAA-TTAA--AAACCCTAAC--CCTAA
*
23498064 CCTAATTTAAGTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
23498093 CCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
*
23498122 CTTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
23498151 CCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
*
23498180 CTTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
23498209 CCTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
* *
23498238 CTTGATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAA
23498267 CCTAATTTAATTAAAAACCCTAAACCCTAA
1 CCTAATTTAATTAAAAACCCT-AACCCTAA
*
23498297 CTTAATTTAATTAAAAACCCTAACC
1 CCTAATTTAATTAAAAACCCTAACC
23498322 ATTAACAAAA
Statistics
Matches: 348, Mismatches: 26, Indels: 27
0.87 0.06 0.07
Matches are distributed among these distances:
29 232 0.67
30 83 0.24
31 4 0.01
33 4 0.01
34 3 0.01
36 3 0.01
37 5 0.01
39 4 0.01
40 5 0.01
41 5 0.01
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.28
Consensus pattern (29 bp):
CCTAATTTAATTAAAAACCCTAACCCTAA
Found at i:23498020 original size:6 final size:6
Alignment explanation
Indices: 23498009--23498036 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
23497999 TTTAATTAAA
23498009 AACCCT AACCCT AACCCT AACCCT AACC
1 AACCCT AACCCT AACCCT AACCCT AACC
23498037 TAATTTAATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.36, C:0.50, G:0.00, T:0.14
Consensus pattern (6 bp):
AACCCT
Found at i:23498025 original size:41 final size:41
Alignment explanation
Indices: 23497980--23498065 Score: 172
Period size: 41 Copynumber: 2.1 Consensus size: 41
23497970 TTTAATTAAA
23497980 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
23498021 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
1 AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
23498062 AACC
1 AACC
23498066 TAATTTAAGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.42, C:0.35, G:0.00, T:0.23
Consensus pattern (41 bp):
AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCT
Found at i:23498091 original size:58 final size:58
Alignment explanation
Indices: 23497905--23498321 Score: 645
Period size: 58 Copynumber: 6.9 Consensus size: 58
23497895 TAAAAAAAAT
* *
23497905 CCTAATTTAATTAAAAACCCTAAACACTAACCTAATTTAATTAAAAACCCTAAACCCTAA
1 CCTAATTTAATTAAAAACCCT-AACCCTAACTTAATTTAATTAAAAACCCT-AACCCTAA
*
23497965 CCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCCTAAC
1 CCTAATTTAATTAAAAACCCTAACCCTAACTTAATTTAATT----A----AA----AACCCTAAC
23498030 CCTAA
54 CCTAA
* *
23498035 CCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAAGTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAACTTAATTTAATTAAAAACCCTAACCCTAA
23498093 CCTAATTTAATTAAAAACCCTAACCCTAACTTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAACTTAATTTAATTAAAAACCCTAACCCTAA
23498151 CCTAATTTAATTAAAAACCCTAACCCTAACTTAATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAACTTAATTTAATTAAAAACCCTAACCCTAA
*
23498209 CCTAATTTAATTAAAAACCCTAACCCTAACTTGATTTAATTAAAAACCCTAACCCTAA
1 CCTAATTTAATTAAAAACCCTAACCCTAACTTAATTTAATTAAAAACCCTAACCCTAA
23498267 CCTAATTTAATTAAAAACCCTAAACCCTAACTTAATTTAATTAAAAACCCTAACC
1 CCTAATTTAATTAAAAACCCT-AACCCTAACTTAATTTAATTAAAAACCCTAACC
23498322 ATTAACAAAA
Statistics
Matches: 338, Mismatches: 6, Indels: 27
0.91 0.02 0.07
Matches are distributed among these distances:
58 206 0.61
59 51 0.15
60 21 0.06
62 2 0.01
63 1 0.00
66 1 0.00
67 2 0.01
70 48 0.14
71 6 0.02
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.28
Consensus pattern (58 bp):
CCTAATTTAATTAAAAACCCTAACCCTAACTTAATTTAATTAAAAACCCTAACCCTAA
Found at i:23498144 original size:87 final size:87
Alignment explanation
Indices: 23497905--23498321 Score: 636
Period size: 87 Copynumber: 4.6 Consensus size: 87
23497895 TAAAAAAAAT
*
23497905 CCTAATTTAATTAAAAACCCTAAACACTAACCTAATTTAATTAAAAACCCTAAACCCTAACCTAA
1 CCTAATTTAATTAAAAACCCT-AACCCTAACCTAATTTAATTAAAAACCCT-AACCCTAACCTAA
23497970 TTTAATTAAAAACCCTAACCCTAA
64 TTTAATTAAAAACCCTAACCCTAA
23497994 CCTAATTTAATTAAAAACCCTAACCCTAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAC
1 CCTAATTTAATT----A----AA----AACCCTAACCCTAACCTAATTTAATTAAAAACCCTAAC
*
23498059 CCTAACCTAATTTAAGTAAAAACCCTAACCCTAA
54 CCTAACCTAATTTAATTAAAAACCCTAACCCTAA
*
23498093 CCTAATTTAATTAAAAACCCTAACCCTAACTTAATTTAATTAAAAACCCTAACCCTAACCTAATT
1 CCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATT
23498158 TAATTAAAAACCCTAACCCTAA
66 TAATTAAAAACCCTAACCCTAA
* * *
23498180 CTTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACTTGATT
1 CCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATT
23498245 TAATTAAAAACCCTAACCCTAA
66 TAATTAAAAACCCTAACCCTAA
*
23498267 CCTAATTTAATTAAAAACCCTAAACCCTAACTTAATTTAATTAAAAACCCTAACC
1 CCTAATTTAATTAAAAACCCT-AACCCTAACCTAATTTAATTAAAAACCCTAACC
23498322 ATTAACAAAA
Statistics
Matches: 305, Mismatches: 10, Indels: 27
0.89 0.03 0.08
Matches are distributed among these distances:
87 173 0.57
88 32 0.10
89 12 0.04
91 2 0.01
93 1 0.00
95 1 0.00
97 2 0.01
99 48 0.16
100 28 0.09
101 6 0.02
ACGTcount: A:0.45, C:0.27, G:0.00, T:0.28
Consensus pattern (87 bp):
CCTAATTTAATTAAAAACCCTAACCCTAACCTAATTTAATTAAAAACCCTAACCCTAACCTAATT
TAATTAAAAACCCTAACCCTAA
Found at i:23501735 original size:124 final size:124
Alignment explanation
Indices: 23501515--23501780 Score: 496
Period size: 124 Copynumber: 2.1 Consensus size: 124
23501505 CCACGATGGT
*
23501515 GCGATTTTATACTATTTGCTCAGAAATGTCAAAAAAAATTATTTCTTACATGACCAACTGTAGCG
1 GCGATTTTATACTATTTGCTCACAAATGTCAAAAAAAATTATTTCTTACATGACCAACTGTAGCG
23501580 AAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGATAGAA
66 AAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGATAGAA
23501639 GCGATTTTATACTATTTGCTCACAAATGTCAAAAAAAATTATTTCTTACATGACCAACTGTAGCG
1 GCGATTTTATACTATTTGCTCACAAATGTCAAAAAAAATTATTTCTTACATGACCAACTGTAGCG
* *
23501704 AAATCGTGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGGTAGAA
66 AAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGATAGAA
*
23501763 GCAATTTTATACTATTTG
1 GCGATTTTATACTATTTG
23501781 ACCAGAAACG
Statistics
Matches: 138, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
124 138 1.00
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (124 bp):
GCGATTTTATACTATTTGCTCACAAATGTCAAAAAAAATTATTTCTTACATGACCAACTGTAGCG
AAATCGCGTCCACGAGGGCACGATTTCACAATTTCTTCTCAAATAGCATCCTGATAGAA
Found at i:23502848 original size:16 final size:16
Alignment explanation
Indices: 23502826--23502865 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
23502816 CGTTTGGTTC
*
23502826 ACTGTAATGGAATAGA
1 ACTGTAATGGAATAAA
*
23502842 GCTGTAATGGAATAAA
1 ACTGTAATGGAATAAA
23502858 ACTGTAAT
1 ACTGTAAT
23502866 TAGTAATTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.42, C:0.07, G:0.23, T:0.28
Consensus pattern (16 bp):
ACTGTAATGGAATAAA
Found at i:23503121 original size:58 final size:58
Alignment explanation
Indices: 23503042--23503165 Score: 187
Period size: 58 Copynumber: 2.1 Consensus size: 58
23503032 TTTTAATGAG
* *
23503042 ATTATTATTAAAAATAATTTAATAAAAATAATAAATAATTTAACCATATT-TTAATATA
1 ATTATTATTAAAAATAATTTAAT-AAAATAATAAATAATTTAACAAAATTCTTAATATA
* * *
23503100 ATTATTATTAAATATAATTTAATAAAATAATATATAATTTAATAAAATTCTTAATATA
1 ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAATATA
23503158 ATTATTAT
1 ATTATTAT
23503166 ATGAATTAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 22 0.37
58 38 0.63
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (58 bp):
ATTATTATTAAAAATAATTTAATAAAATAATAAATAATTTAACAAAATTCTTAATATA
Found at i:23506706 original size:23 final size:23
Alignment explanation
Indices: 23506667--23511088 Score: 1158
Period size: 23 Copynumber: 194.7 Consensus size: 23
23506657 TTTCCAGCAC
* *
23506667 TTAAACACTTCAATTTACATCAA
1 TTAAACACCTCAATTTACAACAA
* *
23506690 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * *
23506713 TTAAACACTTCAATTTACAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
23506736 TTAAACACCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
23506759 TTTAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * * *
23506782 TTATACACCTCTA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
*
23506804 -TAAACATCTCAATTT-CAAGCAA
1 TTAAACACCTCAATTTACAA-CAA
* * * * *
23506826 CTAAACTA-TTCAATTTGCAGCAC
1 TTAAAC-ACCTCAATTTACAACAA
* * ** *
23506849 TTGAACACTTCAATTTACTTCAT
1 TTAAACACCTCAATTTACAACAA
* * * *
23506872 TTGAGCACCTAAATTTACATCAA
1 TTAAACACCTCAATTTACAACAA
* * * *
23506895 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
23506918 TTAAACACCTCAACTTCCAA-AA
1 TTAAACACCTCAATTTACAACAA
* * * * *
23506940 CTTTAACACCCCAAATAACAACAT
1 -TTAAACACCTCAATTTACAACAA
* * * *
23506964 TTATACAACTCAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
** * * * *
23506986 -TAAACATTTAAAATTCCAGCAA
1 TTAAACACCTCAATTTACAACAA
* * * *
23507008 CTAAACAACTCAATTTGCAACAC
1 TTAAACACCTCAATTTACAACAA
* * * * *
23507031 TTACACACTTTAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* *
23507054 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * * *
23507077 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* * *
23507100 TTAAACACTTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
23507123 TTTAACATCCT-AATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * * * *
23507146 TTATATACCTCAA-TAACAGCGA
1 TTAAACACCTCAATTTACAACAA
* **
23507168 -TAAACATCTCAATTT-CTGGCAA
1 TTAAACACCTCAATTTAC-AACAA
* * ** * * *
23507190 CTAAAAAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
23507213 TTAAACACTTCAACTTACATA-AT
1 TTAAACACCTCAATTTACA-ACAA
*
23507236 TTGAACACCTCAA-TTAGCAACAA
1 TTAAACACCTCAATTTA-CAACAA
* * * *
23507259 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* * *
23507282 TTAAACACCTCAAATTGCAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
23507305 TTGAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * * *
23507328 TTATACACCTTAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
* * **
23507350 -TAAACATCTCAATTTCCAGGAA
1 TTAAACACCTCAATTTACAACAA
* ** ** * *
23507372 CTAAACAATTCAATTTTTATCAC
1 TTAAACACCTCAATTTACAACAA
* * * *
23507395 TTAAAAACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * * * *
23507418 TTGAGCTCCTTAATTTATAACAA
1 TTAAACACCTCAATTTACAACAA
* * * * *
23507441 TTACACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
*
23507464 TTAAACACCTC-ATCTTACAACAC
1 TTAAACACCTCAAT-TTACAACAA
* *
23507487 TTTAACATCC-CAATTAACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
*
23507509 TTAATACACCTCAA-TTACAACGA
1 TTAA-ACACCTCAATTTACAACAA
* **
23507532 -TAAACATCTCAATTT-CTGGCAA
1 TTAAACACCTCAATTTAC-AACAA
* ** * *
23507554 CTAAACAATTCAATTTGCAGA-AC
1 TTAAACACCTCAATTTACA-ACAA
* * *
23507577 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * *
23507600 TTGAGCACCTCAGTTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * * *
23507623 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
23507646 TTAAACACCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
23507669 TTTACCATCC-CAATTAACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
***
23507691 TTAATACACCTCAA-TTACAGTGA
1 TTAA-ACACCTCAATTTACAACAA
* ****
23507714 -TAAACATCTCAATTTTTGGCAA
1 TTAAACACCTCAATTTACAACAA
* ** * * *
23507736 CTAAACAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
23507759 CTAAACA-CTACAAATTACATCAA
1 TTAAACACCT-CAATTTACAACAA
* ** * *
23507782 TTGAGGACCTCCATTTACAATAA
1 TTAAACACCTCAATTTACAACAA
* * *
23507805 TTAAACACTTCAATTTACAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
23507828 TTAAACACCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
23507851 TTTAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* *
23507874 TTATACACCTCAA-TTACAACGA
1 TTAAACACCTCAATTTACAACAA
* * **
23507896 -TAAACATCTCAATTTCCTGCAA
1 TTAAACACCTCAATTTACAACAA
* * ** * * *
23507918 CTAAAAAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * * *
23507941 TTAAACACTTCAACTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * *
23507964 TTGAGCACCTCAA-TTAGCAATAA
1 TTAAACACCTCAATTTA-CAACAA
* * * *
23507987 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
23508010 TTAAACACCTCAAATTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
23508033 TTGAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * * * *
23508056 TTATACATCTTAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
* * *
23508078 -TAAACATCTCAATTTCCAGCAA
1 TTAAACACCTCAATTTACAACAA
** ** * *
23508100 TTAAACAATTCAATTTTTAGCAC
1 TTAAACACCTCAATTTACAACAA
* *
23508123 TTAAACACTTCAATTTACATA-AT
1 TTAAACACCTCAATTTACA-ACAA
* * * * * *
23508146 TTGAGCTCTTTAATTTAAAACAA
1 TTAAACACCTCAATTTACAACAA
* * * * *
23508169 TTACACACTTCAATTTATAGCAC
1 TTAAACACCTCAATTTACAACAA
* *
23508192 TTAAACACCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
23508215 TTTAACATCC-CAATTAACAA-TA
1 TTAAACA-CCTCAATTTACAACAA
*
23508237 TTAATACACCTCAA-TTACAACGA
1 TTAA-ACACCTCAATTTACAACAA
* ***
23508260 -TAAACATCTCAATTTTTGACAA
1 TTAAACACCTCAATTTACAACAA
* ** *
23508282 CTAAACAATTCAATTTACAGA-AC
1 TTAAACACCTCAATTTACA-ACAA
* * *
23508305 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * *
23508328 TTGAGCACCTCAGTTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * * *
23508351 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* *
23508374 TTAAACACCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
23508397 TTTACCATCC-CAATTAACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
***
23508419 TTAATACACCTCAA-TTACAGTGA
1 TTAA-ACACCTCAATTTACAACAA
* * *
23508442 -TAAACATCTCAATTT-TAGCAA
1 TTAAACACCTCAATTTACAACAA
* * ** * * *
23508463 CTCAACAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
23508486 CTAAACA-CTACAATTCACATCAA
1 TTAAACACCT-CAATTTACAACAA
* *
23508509 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* *
23508532 TTAAACACTTCAATTTACAGA-AT
1 TTAAACACCTCAATTTACA-ACAA
* *
23508555 TTAAACACCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
23508578 TTTAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * *
23508601 TTATACACCTCAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
* * *
23508623 -TAAACATCTCCATTT-CTAGCAA
1 TTAAACACCTCAATTTAC-AACAA
* * ** * * *
23508645 CTAAATAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
23508668 TTGAACACTTCAATTTACAACAT
1 TTAAACACCTCAATTTACAACAA
* * * * *
23508691 TTGAGCACCTAAATCTACATCAA
1 TTAAACACCTCAATTTACAACAA
* *
23508714 TTAAACACTTCAATTTACAGCAA
1 TTAAACACCTCAATTTACAACAA
* * *
23508737 TTAAACACCTCAACTTCCAACACC
1 TTAAACACCTCAATTTACAACA-A
* *
23508761 TT-AACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * *
23508783 TTATACACCTCAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
* * *
23508805 -TAAACATCTCAATTTCCAGCAA
1 TTAAACACCTCAATTTACAACAA
* ** * * *
23508827 CTAAACAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * * *
23508850 TTGAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * *
23508873 TTGAGCACCTCAATTTACAGCAA
1 TTAAACACCTCAATTTACAACAA
* * *
23508896 TTAAACACTTCAATTT-CTAGCAT
1 TTAAACACCTCAATTTAC-AACAA
* * *
23508919 TTAAACACCTCAACTAACAACAC
1 TTAAACACCTCAATTTACAACAA
* * * * *
23508942 TTTAACATCTGAATTAACAACAT
1 TTAAACACCTCAATTTACAACAA
* * * *
23508965 TTATAGACCTCAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
* * **
23508987 -TAAACATCTCAATTTCCGGCAA
1 TTAAACACCTCAATTTACAACAA
* ** ** * *
23509009 CTAAACAATTCAATTTGTAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
23509032 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * *
23509055 TTGAGCACATCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * * *
23509078 ATAAACACTTCAATTTATAGC-A
1 TTAAACACCTCAATTTACAACAA
* *
23509100 TCTAAACACCTCAAATTACAACAC
1 T-TAAACACCTCAATTTACAACAA
* *
23509124 TTGAACATCC-CAATTAACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
* * * *
23509146 TTATACACCTTAA-TTACATCGA
1 TTAAACACCTCAATTTACAACAA
* * *
23509168 -TAAACATCTCAATTTCCAGCAA
1 TTAAACACCTCAATTTACAACAA
* *
23509190 CTAAACA----ATTTTAGC-AC--
1 TTAAACACCTCAATTTA-CAACAA
* * ** *
23509207 TTAAACACTTCAATTAACATGAT
1 TTAAACACCTCAATTTACAACAA
* * *
23509230 TTGAGCACCTCAATTTTCAACAA
1 TTAAACACCTCAATTTACAACAA
* * *
23509253 TTAAACACTTCAATTTACAGCAT
1 TTAAACACCTCAATTTACAACAA
23509276 TTAAACACCTC-A---ACAAC-A
1 TTAAACACCTCAATTTACAACAA
* *
23509294 TTAATACACCTCAA-TTACAGCGA
1 TTAA-ACACCTCAATTTACAACAA
* * *
23509317 -TAAACATCTTAATTT-CTGGA-AA
1 TTAAACACCTCAATTTAC--AACAA
* ** * * *
23509339 CTAAACAATTCAATTTCCAGCAC
1 TTAAACACCTCAATTTACAACAA
** * *
23509362 TTAAACA-CTTTATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * * *
23509384 TTGAGCACCTAAATTTACAGCAA
1 TTAAACACCTCAATTTACAACAA
* * *
23509407 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
*
23509430 TTAAACACCTCAACTTACAA-AA
1 TTAAACACCTCAATTTACAACAA
* *
23509452 CTT-ACCATCC-CAATTAACAAC-A
1 -TTAAACA-CCTCAATTTACAACAA
* *
23509474 TTACTACACCTCAA-TTACAACGA
1 TTA-AACACCTCAATTTACAACAA
* * *
23509497 -TAAACATCTCAATTTCCAGCAA
1 TTAAACACCTCAATTTACAACAA
* ** * * *
23509519 CTAAACAATTCAATGTT-TAGCAC
1 TTAAACACCTCAAT-TTACAACAA
* ** * * *
23509542 CTAAACAATTGAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* ** * *
23509565 TTGAGTACCTCAGTTTACAGCAA
1 TTAAACACCTCAATTTACAACAA
* * *
23509588 TTAAACACTTCAATCTACAGA-AT
1 TTAAACACCTCAATTTACA-ACAA
* * *
23509611 TTAAACGCCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* *
23509634 TTTAACATCCT-AATTAACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
* *
23509656 TTAATACACCTTAA-TTACAGCAA
1 TTAA-ACACCTCAATTTACAACAA
** * *
23509679 -TAAACATATCAATTTCCAGCAA
1 TTAAACACCTCAATTTACAACAA
* * * ** * * *
23509701 CTGAATAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
23509724 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * *
23509747 TTGAGCACCTCAATTTACAGCAA
1 TTAAACACCTCAATTTACAACAA
** * *
23509770 TTAAACAGTTCAATTTACAGCAT
1 TTAAACACCTCAATTTACAACAA
* * *
23509793 TTAAACGCCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * * *
23509816 TTTAACATCC-CAATTAACAAGAT
1 TTAAACA-CCTCAATTTACAACAA
* *
23509839 TTATACACCGT-AATTATAGCAATAAA
1 TTAAACACC-TCAATT-TA-CAA-CAA
* ** *
23509865 CTAAACAATTCAATTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* **
23509888 TTAAACACTTCAATTTACATA-TT
1 TTAAACACCTCAATTTACA-ACAA
* *
23509911 TTGAGCACCTCAATTTACAGA-AA
1 TTAAACACCTCAATTTACA-ACAA
* * * * *
23509934 TTAAACACTTCAGTTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* * *
23509957 TTAAACACCTCAACTAACAACAG
1 TTAAACACCTCAATTTACAACAA
* * *
23509980 TTTACCATCC-CAATTAACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
* * *
23510002 TTAATACACCTTAA-TTACAGCGA
1 TTAA-ACACCTCAATTTACAACAA
* *
23510025 -TAAACATCTCAATTTCCAGA-AA
1 TTAAACACCTCAATTTACA-ACAA
** ** * *
23510047 TTAAACAATTCAATTTTTAGCAC
1 TTAAACACCTCAATTTACAACAA
* * **
23510070 TTAAACACTTCAATTTACATCGT
1 TTAAACACCTCAATTTACAACAA
* *
23510093 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * *
23510116 TTAAACACTTCAATTTACAGCAT
1 TTAAACACCTCAATTTACAACAA
* * *
23510139 TTAAACACCTTAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
23510162 TTTAACATCC-CGATTAACAACAA
1 TTAAACA-CCTCAATTTACAACAA
* **
23510185 -TAATACA-CTCCAACTT-CTGGCAA
1 TTAA-ACACCT-CAATTTAC-AACAA
* ** * * ** *
23510208 CTAAACAATTGAATTTGCAGTAC
1 TTAAACACCTCAATTTACAACAA
* * * * *
23510231 TTACACACTTTAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* *
23510254 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* *
23510277 TTAAACACTTCAATTTACAGA-AT
1 TTAAACACCTCAATTTACA-ACAA
* * *
23510300 TTAAACACCTCAACTAACAACAC
1 TTAAACACCTCAATTTACAACAA
* *
23510323 TTTAACATCC-CAATTAACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
**
23510345 TTAATACACCTCAA-TTACAATGA
1 TTAA-ACACCTCAATTTACAACAA
* * ***
23510368 -TAAAAATCTCAACTTT-TGGCAA
1 TTAAACACCTCAA-TTTACAACAA
* ** * * *
23510390 CTAAACAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
** * *
23510413 TTAAACAGTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * *
23510436 TTGAGCACCTCAATTTACATCAA
1 TTAAACACCTCAATTTACAACAA
* * * *
23510459 TTAACCACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * *
23510482 TTAAACCCCTCAACTTACAACAC
1 TTAAACACCTCAATTTACAACAA
* * * *
23510505 TTTAACATCC-CAATTAAAAACAT
1 TTAAACA-CCTCAATTTACAACAA
* *
23510528 TTATACACCGT-AA-TTACAGCAA
1 TTAAACACC-TCAATTTACAACAA
** *
23510550 -TAAACATATCAATTTCCAACAA
1 TTAAACACCTCAATTTACAACAA
* ** * * *
23510572 CTAAACAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
23510595 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* * * *
23510618 TTGAGCATCTCAATTTACAGCAA
1 TTAAACACCTCAATTTACAACAA
* * * *
23510641 TTAAACACTTCAATTTATAGCAT
1 TTAAACACCTCAATTTACAACAA
* * *
23510664 TTAAACACCTCAACTAACAACAC
1 TTAAACACCTCAATTTACAACAA
* * *
23510687 TTTAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * * *
23510710 TTATACTCATCAA-TTACAACGA
1 TTAAACACCTCAATTTACAACAA
* ****
23510732 -TAAACATCTCAATTTTTGGCAA
1 TTAAACACCTCAATTTACAACAA
* * ** * * *
23510754 CTAAATAATTCAATTTGCAGCAC
1 TTAAACACCTCAATTTACAACAA
* * *
23510777 TTAAACACTTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* *
23510800 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * * * *
23510823 ATATACACTTCAATTTATAGC-A
1 TTAAACACCTCAATTTACAACAA
*
23510845 TTAAAACACCTCAATTTACAACAC
1 TT-AAACACCTCAATTTACAACAA
* * *
23510869 TTGAACATCC-CAATTAACAACAT
1 TTAAACA-CCTCAATTTACAACAA
* * * *
23510892 TTATACACCTTAA-TTACAGCGA
1 TTAAACACCTCAATTTACAACAA
* * **
23510914 -TAAACATCTCAATTTCCAGTAA
1 TTAAACACCTCAATTTACAACAA
* ** * ** * *
23510936 CTAAACAATTTAATTTTTAGCAC
1 TTAAACACCTCAATTTACAACAA
** * *
23510959 TTAAACAATTCAATTTACATCAT
1 TTAAACACCTCAATTTACAACAA
* *
23510982 TTGAGCACCTCAATTTACAACAA
1 TTAAACACCTCAATTTACAACAA
* * * *
23511005 TTACACACTTCAATTTACAGCAT
1 TTAAACACCTCAATTTACAACAA
* * * *
23511028 TTACACACCTCAACTTATAACAC
1 TTAAACACCTCAATTTACAACAA
* *
23511051 TTTAACATCC-CAATTAACAAC-A
1 TTAAACA-CCTCAATTTACAACAA
23511073 TTAAGACACCTCAATT
1 TTAA-ACACCTCAATT
23511089 ACAGCGATAA
Statistics
Matches: 3152, Mismatches: 1054, Indels: 386
0.69 0.23 0.08
Matches are distributed among these distances:
17 6 0.00
18 4 0.00
19 16 0.01
20 4 0.00
21 206 0.07
22 389 0.12
23 2427 0.77
24 84 0.03
25 6 0.00
26 10 0.00
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (23 bp):
TTAAACACCTCAATTTACAACAA
Found at i:23506968 original size:182 final size:182
Alignment explanation
Indices: 23506661--23509289 Score: 3939
Period size: 182 Copynumber: 14.5 Consensus size: 182
23506651 ACATAGTTTC
*
23506661 CAGCACTTAAACACTTCAATTTACATCAATTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
*
23506726 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * *
23506791 TCTATTACAGCGATAAACATCTCAATTTCAAGCAACTAAACTATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * *
23506843 CAGCACTTGAACACTTCAATTTACTTCATTTGAGCACCTAAATTTACATCAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * * *
23506908 TTTATAGCATTTAAACACCTCAACTTCCAAAACTTTAACACCCCAAATAACAACATTTATACAAC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * * *
23506973 TCAATTACAGCGATAAACATTTAAAATTCCAGCAACTAAACAACTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
23507025 CAACACTTACACACTTTAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
23507090 TTTATAGCATTTAAACACTTCAACTTACAACACTTTAACATCCTAATTAACAACATTTATATACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* ** *
23507155 TCAATAACAGCGATAAACATCTCAATTTCTGGCAACTAAAAAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
23507207 CAGCACTTAAACACTTCAACTTACATAATTTGAACACCTCAA-TTAGCAACAATTAAACACTTCA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTA-CAACAATTAAACACTTCA
* * *
23507271 ATTTATAGCATTTAAACACCTCAAATTGCAACACTTGAACATCCCAATTAACAACATTTATACAC
65 ATTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACAC
* * *
23507336 CTTAATTACAGCGATAAACATCTCAATTTCCAGGAACTAAACAATTCAATTTT
130 CTCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * * * * *
23507389 TATCACTTAAAAACTTCAATTTACATCATTTGAGCTCCTTAATTTATAACAATTACACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* *
23507454 TTTATAGCATTTAAACACCTCATCTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* **
23507519 TCAATTACAACGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* *
23507571 CAGAACTTAAACACTTCAATTTACATCATTTGAGCACCTCAGTTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* *
23507636 TTTATAGCATTTAAACACCTCAACTTACAACACTTTACCATCCCAATTAACAACATTAATACACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* ***
23507701 TCAATTACAGTGATAAACATCTCAATTTTTGGCAACTAAACAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * * * * *
23507753 CAGCACCTAAACACTACAAATTACATCAATTGAGGACCTCCATTTACAATAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
*
23507818 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * *
23507883 TCAATTACAACGATAAACATCTCAATTTCCTGCAACTAAAAAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* *
23507935 CAGCACTTAAACACTTCAACTTACATCATTTGAGCACCTCAA-TTAGCAATAATTAAACACTTCA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTA-CAACAATTAAACACTTCA
* * *
23507999 ATTTATAGCATTTAAACACCTCAAATTACAACACTTGAACATCCCAATTAACAACATTTATACAT
65 ATTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACAC
* * *
23508064 CTTAATTACAGCGATAAACATCTCAATTTCCAGCAATTAAACAATTCAATTTT
130 CTCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * * * * *
23508117 TAGCACTTAAACACTTCAATTTACATAATTTGAGCTCTTTAATTTAAAACAATTACACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
23508182 TTTATAGCACTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAATATTAATACACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* ** *
23508247 TCAATTACAACGATAAACATCTCAATTT-TTGACAACTAAACAATTCAATTTA
131 TCAATTACAGCGATAAACATCTCAATTTCCAG-CAACTAAACAATTCAATTTG
* *
23508299 CAGAACTTAAACACTTCAATTTACATCATTTGAGCACCTCAGTTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* *
23508364 TTTATAGCATTTAAACACCTCAACTTACAACACTTTACCATCCCAATTAACAACATTAATACACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * *
23508429 TCAATTACAGTGATAAACATCTCAATTT-TAGCAACTCAACAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * *
23508480 CAGCACCTAAACACTACAATTCACATCAATTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* *
23508545 TTTACAGAATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * *
23508610 TCAATTACAGCGATAAACATCTCCATTTCTAGCAACTAAATAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * * *
23508662 CAGCACTTGAACACTTCAATTTACAACATTTGAGCACCTAAATCTACATCAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * *
23508727 TTTACAGCAATTAAACACCTCAACTTCCAACACCTTAACATCCCAATTAACAACATTTATACACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
23508792 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* *
23508844 CAGCACTTGAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAGCAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * ** *
23508909 TTTCTAGCATTTAAACACCTCAACTAACAACACTTTAACATCTGAATTAACAACATTTATAGACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
*
23508974 TCAATTACAGCGATAAACATCTCAATTTCCGGCAACTAAACAATTCAATTTG
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
23509026 TAGCACTTAAACACTTCAATTTACATCATTTGAGCACATCAATTTACAACAAATAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
23509091 TTTATAGCATCTAAACACCTCAAATTACAACACTTGAACATCCCAATTAACAACA-TTATACACC
66 TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* *
23509155 TTAATTACATCGATAAACATCTCAATTTCCAGCAACTAAACAA-T---TTT-
131 TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
23509202 -AGCACTTAAACACTTCAATTAACATGATTTGAGCACCTCAATTTTCAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
*
23509266 TTTACAGCATTTAAACACCTCAAC
66 TTTATAGCATTTAAACACCTCAAC
23509290 AACATTAATA
Statistics
Matches: 2206, Mismatches: 235, Indels: 19
0.90 0.10 0.01
Matches are distributed among these distances:
175 80 0.04
177 3 0.00
180 1 0.00
181 219 0.10
182 1897 0.86
183 6 0.00
ACGTcount: A:0.41, C:0.25, G:0.05, T:0.30
Consensus pattern (182 bp):
CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
TTTATAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
TCAATTACAGCGATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
Found at i:23507347 original size:364 final size:364
Alignment explanation
Indices: 23506661--23511100 Score: 6071
Period size: 364 Copynumber: 12.4 Consensus size: 364
23506651 ACATAGTTTC
*
23506661 CAGCACTTAAACACTTCAATTTACATCAATTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
23506726 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* ** * *
23506791 TCTATTACAGCGATAAACATCTCAATTTCAAGCAACTAAACTATTCAATTTGCAGCACTTGAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* * *
23506856 CTTCAATTTACTTCATTTGAGCACCTAAATTTACATCAATTAAACACTTCAATTTATAGCATTTA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTATAGCATTTA
* * * * * *
23506921 AACACCTCAACTTCCAAAACTTTAACACCCCAAATAACAACATTTATACAACTCAATTACAGCGA
261 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCGA
* * * *
23506986 TAAACATTTAAAATTCCAGCAACTAAACAACTCAATTTG
326 TAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
23507025 CAACACTTACACACTTTAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * *
23507090 TTTATAGCATTTAAACACTTCAACTTACAACACTTTAACATCCTAATTAACAACATTTATATACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* *
23507155 TCAATAACAGCGATAAACATCTCAATTTCTGGCAACTAAAAAATTCAATTTGCAGCACTTAAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* * *
23507220 CTTCAACTTACATAATTTGAACACCTCAA-TTAGCAACAATTAAACACTTCAATTTATAGCATTT
196 CTTCAATTTACATCATTTGAGCACCTCAATTTA-CAACAATTAAACACTTCAATTTATAGCATTT
* * *
23507284 AAACACCTCAAATTGCAACACTTGAACATCCCAATTAACAACATTTATACACCTTAATTACAGCG
260 AAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCG
* *
23507349 ATAAACATCTCAATTTCCAGGAACTAAACAATTCAATTTT
325 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * * * * *
23507389 TATCACTTAAAAACTTCAATTTACATCATTTGAGCTCCTTAATTTATAACAATTACACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
23507454 TTTATAGCATTTAAACACCTCATCTTACAACACTTTAACATCCCAATTAACAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* *
23507519 TCAATTACAACGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGAACTTAAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
*
23507584 CTTCAATTTACATCATTTGAGCACCTCAGTTTACAACAATTAAACACTTCAATTTATAGCATTTA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTATAGCATTTA
* * * *
23507649 AACACCTCAACTTACAACACTTTACCATCCCAATTAACAACATTAATACACCTCAATTACAGTGA
261 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCGA
***
23507714 TAAACATCTCAATTTTTGGCAACTAAACAATTCAATTTG
326 TAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * * * * *
23507753 CAGCACCTAAACACTACAAATTACATCAATTGAGGACCTCCATTTACAATAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
23507818 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* *
23507883 TCAATTACAACGATAAACATCTCAATTTCCT-GCAACTAAAAAATTCAATTTGCAGCACTTAAAC
131 TCAATTACAGCGATAAACATCTCAATTT-CTGGCAACTAAACAATTCAATTTGCAGCACTTAAAC
* *
23507947 ACTTCAACTTACATCATTTGAGCACCTCAA-TTAGCAATAATTAAACACTTCAATTTATAGCATT
195 ACTTCAATTTACATCATTTGAGCACCTCAATTTA-CAACAATTAAACACTTCAATTTATAGCATT
* * *
23508011 TAAACACCTCAAATTACAACACTTGAACATCCCAATTAACAACATTTATACATCTTAATTACAGC
259 TAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGC
* *
23508076 GATAAACATCTCAATTTCCAGCAATTAAACAATTCAATTTT
324 GATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * * * * *
23508117 TAGCACTTAAACACTTCAATTTACATAATTTGAGCTCTTTAATTTAAAACAATTACACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * *
23508182 TTTATAGCACTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAATATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * * * *
23508247 TCAATTACAACGATAAACATCTCAATTTTTGACAACTAAACAATTCAATTTACAGAACTTAAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
*
23508312 CTTCAATTTACATCATTTGAGCACCTCAGTTTACAACAATTAAACACTTCAATTTATAGCATTTA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTATAGCATTTA
* * * *
23508377 AACACCTCAACTTACAACACTTTACCATCCCAATTAACAACATTAATACACCTCAATTACAGTGA
261 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCGA
* *
23508442 TAAACATCTCAATTT-TAGCAACTCAACAATTCAATTTG
326 TAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * * *
23508480 CAGCACCTAAACACTACAATTCACATCAATTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
*
23508545 TTTACAGAATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * * *
23508610 TCAATTACAGCGATAAACATCTCCATTTCTAGCAACTAAATAATTCAATTTGCAGCACTTGAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* * * * * *
23508675 CTTCAATTTACAACATTTGAGCACCTAAATCTACATCAATTAAACACTTCAATTTACAGCAATTA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTATAGCATTTA
* * *
23508740 AACACCTCAACTTCCAACACCTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCGA
261 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCGA
23508805 TAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
326 TAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* *
23508844 CAGCACTTGAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAGCAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* ** *
23508909 TTT-CTAGCATTTAAACACCTCAACTAACAACACTTTAACATCTGAATTAACAACATTTATAGAC
66 TTTAC-AGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACAC
* *
23508973 CTCAATTACAGCGATAAACATCTCAATTTCCGGCAACTAAACAATTCAATTTGTAGCACTTAAAC
130 CTCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAAC
* * *
23509038 ACTTCAATTTACATCATTTGAGCACATCAATTTACAACAAATAAACACTTCAATTTATAGCATCT
195 ACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTATAGCATTT
* * *
23509103 AAACACCTCAAATTACAACACTTGAACATCCCAATTAACAACA-TTATACACCTTAATTACATCG
260 AAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCG
23509167 ATAAACATCTCAATTTCCAGCAACTAAACAA-T---TTT-
325 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
23509202 -AGCACTTAAACACTTCAATTAACATGATTTGAGCACCTCAATTTTCAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
*
23509266 TTTACAGCATTTAAACACCTC-A---ACAACA---T----T---AA-T-AC-AC----CT-CA--
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * * *
23509307 --ATT-ACAGCGATAAACATCTTAATTTCTGGAAACTAAACAATTCAATTTCCAGCACTTAAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* * * * *
23509369 CTT-TATTTACATCATTTGAGCACCTAAATTTACAGCAATTAAACACTTCAATTTACATCATTTA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTATAGCATTTA
* * * *
23509433 AACACCTCAACTTACAAAAC-TTACCATCCCAATTAACAACA-TTACTACACCTCAATTACAACG
261 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTA-TACACCTTAATTACAGCG
23509496 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATGTT-
325 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAAT-TTG
* * * * * * *
23509536 TAGCACCTAAACAATTGAATTTACATCATTTGAGTACCTCAGTTTACAGCAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * * *
23509601 TCTACAGAATTTAAACGCCTCAACTTACAACACTTTAACATCCTAATTAACAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * * ** * *
23509666 TTAATTACAGCAATAAACATATCAATTTCCAGCAACTGAATAATTCAATTTGCAGCACTTAAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* * *
23509731 CTTCAATTTACATCATTTGAGCACCTCAATTTACAGCAATTAAACAGTTCAATTTACAGCATTTA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTATAGCATTTA
* * *
23509796 AACGCCTCAACTTACAACACTTTAACATCCCAATTAACAAGATTTATACACCGTAATT------A
261 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCGA
* *
23509855 T----A--GCAA--T--A--AACTAAACAATTCAATTTA
326 TAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
*
23509882 CAACACTTAAACACTTCAATTTACAT-ATTTTGAGCACCTCAATTTACAGA-AATTAAACACTTC
1 CAGCACTTAAACACTTCAATTTACATCA-TTTGAGCACCTCAATTTACA-ACAATTAAACACTTC
* * * * * *
23509945 AGTTTATAGCATTTAAACACCTCAACTAACAACAGTTTACCATCCCAATTAACAACATTAATACA
64 AATTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACA
* ** * * **
23510010 CCTTAATTACAGCGATAAACATCTCAATTTCCAGAAATTAAACAATTCAATTTTTAGCACTTAAA
129 CCTCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAA
* *
23510075 CACTTCAATTTACATCGTTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATT
194 CACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTATAGCATT
* *
23510140 TAAACACCTTAACTTACAACACTTTAACATCCCGATTAACAAC------A-A---TAA-T--A-C
259 TAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGC
* ** *
23510191 -----AC-TC-CAACTTCTGGCAACTAAACAATTGAATTTG
324 GATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
23510225 CAGTACTTACACACTTTAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * *
23510290 TTTACAGAATTTAAACACCTCAACTAACAACACTTTAACATCCCAATTAACAACATTAATACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
** *
23510355 TCAATTACAATGATAAAAATCTCAACTTT-TGGCAACTAAACAATTCAATTTGCAGCACTTAAAC
131 TCAATTACAGCGATAAACATCTCAA-TTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAAC
* * * * *
23510419 AGTTCAATTTACATCATTTGAGCACCTCAATTTACATCAATTAACCACTTCAATTTACATCATTT
195 ACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTATAGCATTT
* * * *
23510484 AAACCCCTCAACTTACAACACTTTAACATCCCAATTAAAAACATTTATACACCGTAATTACAGCA
260 AAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCG
* *
23510549 ATAAACATATCAATTTCCAACAACTAAACAATTCAATTTG
325 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* *
23510589 CAGCACTTAAACACTTCAATTTACATCATTTGAGCATCTCAATTTACAGCAATTAAACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * *
23510654 TTTATAGCATTTAAACACCTCAACTAACAACACTTTAACATCCCAATTAACAACATTTATACTCA
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
* * *
23510719 TCAATTACAACGATAAACATCTCAATTTTTGGCAACTAAATAATTCAATTTGCAGCACTTAAACA
131 TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
* * *
23510784 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAAATATACACTTCAATTTATAGCATTAA
196 CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTATAGCATTTA
* *
23510849 AACACCTCAATTTACAACACTTGAACATCCCAATTAACAACATTTATACACCTTAATTACAGCGA
261 AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCGA
* * *
23510914 TAAACATCTCAATTTCCAGTAACTAAACAATTTAATTTT
326 TAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
* * *
23510953 TAGCACTTAAACAATTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTACACACTTCAA
1 CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
* * * *
23511018 TTTACAGCATTTACACACCTCAACTTATAACACTTTAACATCCCAATTAACAACATTAAGACACC
66 TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
23511083 TCAATTACAGCGATAAAC
131 TCAATTACAGCGATAAAC
23511101 TTTAACATCC
Statistics
Matches: 3603, Mismatches: 387, Indels: 172
0.87 0.09 0.04
Matches are distributed among these distances:
328 22 0.01
329 118 0.03
330 58 0.02
331 2 0.00
333 1 0.00
334 2 0.00
335 75 0.02
336 5 0.00
337 3 0.00
339 8 0.00
340 3 0.00
341 2 0.00
342 3 0.00
343 284 0.08
344 4 0.00
345 3 0.00
346 284 0.08
348 1 0.00
349 3 0.00
350 4 0.00
351 2 0.00
352 5 0.00
353 9 0.00
354 2 0.00
356 3 0.00
357 81 0.02
358 3 0.00
359 3 0.00
361 2 0.00
362 56 0.02
363 459 0.13
364 2082 0.58
365 11 0.00
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (364 bp):
CAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAA
TTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
TCAATTACAGCGATAAACATCTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACA
CTTCAATTTACATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTATAGCATTTA
AACACCTCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCGA
TAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTG
Found at i:23509425 original size:154 final size:148
Alignment explanation
Indices: 23509139--23509443 Score: 423
Period size: 154 Copynumber: 2.0 Consensus size: 148
23509129 CATCCCAATT
* * *
23509139 AACAACATTATACACCTTAATTACATCGATAAACATCTCAATTTCCAGCAACTAAACAATTTTAG
1 AACAACATTATACACCTCAATTACAGCGATAAACATCTCAATTTCCAGAAACTAAACAATTTTAG
* * *
23509204 CACTTAAACACTTCAATTAACATGATTTGAGCACCTCAATTTTCAACAATTAAACACTTCAATTT
66 CACTTAAACACTTCAATTAACATCATTTGAGCACCTAAATTTACAACAATTAAACACTTCAATTT
23509269 ACAGCATTTAAACACCTC
131 ACAGCATTTAAACACCTC
* **
23509287 AACAACATTAATACACCTCAATTACAGCGATAAACATCTTAATTTCTGGAAACTAAACAATTCAA
1 AACAACATT-ATACACCTCAATTACAGCGATAAACATCTCAATTTCCAGAAACTAAACAA-T---
* * *
23509352 TTTCCAGCACTTAAACACTT-TATTTACATCATTTGAGCACCTAAATTTACAGCAATTAAACACT
61 TTT--AGCACTTAAACACTTCAATTAACATCATTTGAGCACCTAAATTTACAACAATTAAACACT
*
23509416 TCAATTTACATCATTTAAACACCTC
124 TCAATTTACAGCATTTAAACACCTC
23509441 AAC
1 AAC
23509444 TTACAAAACT
Statistics
Matches: 137, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
148 9 0.07
149 44 0.32
150 1 0.01
153 3 0.02
154 65 0.47
155 15 0.11
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (148 bp):
AACAACATTATACACCTCAATTACAGCGATAAACATCTCAATTTCCAGAAACTAAACAATTTTAG
CACTTAAACACTTCAATTAACATCATTTGAGCACCTAAATTTACAACAATTAAACACTTCAATTT
ACAGCATTTAAACACCTC
Found at i:23509741 original size:182 final size:180
Alignment explanation
Indices: 23509287--23509865 Score: 820
Period size: 182 Copynumber: 3.2 Consensus size: 180
23509277 TAAACACCTC
* * ** *
23509287 AACAACATTAATACACCTCAATTACAGCGATAAACATCTTAATTTCTGGAAACTAAACAATTCAA
1 AACAACATTAATACACCTCAATTACAGCAATAAACATCTCAATTTCCAGCAACTAAACAATTCAA
* *
23509352 TTTCCAGCACTTAAACACTTTATTTACATCATTTGAGCACCTAAATTTACAGCAATTAAACACTT
66 TTT-CAGCACTTAAACACTTAATTTACATCATTTGAGCACCTCAATTTACAGCAATTAAACACTT
* * * *
23509417 CAATTTACATCATTTAAACACCTCAACTTACAAAAC-TTACCATCCCAATT
130 CAATTTACAGCATTTAAACGCCTCAACTTACAACACTTTAACATCCCAATT
* * *
23509467 AACAACATTACTACACCTCAATTACAACGATAAACATCTCAATTTCCAGCAACTAAACAATTCAA
1 AACAACATTAATACACCTCAATTACAGCAATAAACATCTCAATTTCCAGCAACTAAACAATTCAA
* * * * *
23509532 TGTTTAGCACCTAAACAATTGAATTTACATCATTTGAGTACCTCAGTTTACAGCAATTAAACACT
66 T-TTCAGCACTTAAACACTT-AATTTACATCATTTGAGCACCTCAATTTACAGCAATTAAACACT
* * *
23509597 TCAATCTACAGAATTTAAACGCCTCAACTTACAACACTTTAACATCCTAATT
129 TCAATTTACAGCATTTAAACGCCTCAACTTACAACACTTTAACATCCCAATT
* * * *
23509649 AACAACATTAATACACCTTAATTACAGCAATAAACATATCAATTTCCAGCAACTGAATAATTCAA
1 AACAACATTAATACACCTCAATTACAGCAATAAACATCTCAATTTCCAGCAACTAAACAATTCAA
*
23509714 TTTGCAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAATTTACAGCAATTAAACAGT
66 TTT-CAGCACTTAAACACTT-AATTTACATCATTTGAGCACCTCAATTTACAGCAATTAAACACT
23509779 TCAATTTACAGCATTTAAACGCCTCAACTTACAACACTTTAACATCCCAATT
129 TCAATTTACAGCATTTAAACGCCTCAACTTACAACACTTTAACATCCCAATT
* * *
23509831 AACAAGATTTATACACCGT-AATTATAGCAATAAAC
1 AACAACATTAATACACC-TCAATTACAGCAATAAAC
23509866 TAAACAATTC
Statistics
Matches: 354, Mismatches: 40, Indels: 8
0.88 0.10 0.02
Matches are distributed among these distances:
180 73 0.21
181 76 0.21
182 204 0.58
183 1 0.00
ACGTcount: A:0.41, C:0.24, G:0.06, T:0.30
Consensus pattern (180 bp):
AACAACATTAATACACCTCAATTACAGCAATAAACATCTCAATTTCCAGCAACTAAACAATTCAA
TTTCAGCACTTAAACACTTAATTTACATCATTTGAGCACCTCAATTTACAGCAATTAAACACTTC
AATTTACAGCATTTAAACGCCTCAACTTACAACACTTTAACATCCCAATT
Found at i:23510430 original size:182 final size:181
Alignment explanation
Indices: 23510202--23511100 Score: 1305
Period size: 182 Copynumber: 4.9 Consensus size: 181
23510192 CTCCAACTTC
* * * *
23510202 TGGCAACTAAACAATTGAATTTGCAGTACTTACACACTTTAATTTACATCATTTGAGCACCTCAA
1 TGGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAA
* *
23510267 TTTACAACAATTAAACACTTCAATTTACAGAATTTAAACACCTCAACTAACAACACTTTAACATC
66 TTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATC
* * *
23510332 CCAATTAACAACATTAATACACCTCAATTACAATGATAAAAATCTCAACTTT
131 CCAATTAACAACATTTATACACCTCAATTACAACGATAAACATCTCAA-TTT
*
23510384 TGGCAACTAAACAATTCAATTTGCAGCACTTAAACAGTTCAATTTACATCATTTGAGCACCTCAA
1 TGGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAA
* * * *
23510449 TTTACATCAATTAACCACTTCAATTTACATCATTTAAACCCCTCAACTTACAACACTTTAACATC
66 TTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATC
* * * *
23510514 CCAATTAAAAACATTTATACACCGT-AATTACAGCAATAAACATATCAATTT
131 CCAATTAACAACATTTATACACC-TCAATTACAACGATAAACATCTCAATTT
*** *
23510565 CCAACAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAGCATCTCA
1 -TGGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCA
* * *
23510630 ATTTACAGCAATTAAACACTTCAATTTATAGCATTTAAACACCTCAACTAACAACACTTTAACAT
65 ATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTTACAACACTTTAACAT
* *
23510695 CCCAATTAACAACATTTATACTCATCAATTACAACGATAAACATCTCAATTTT
130 CCCAATTAACAACATTTATACACCTCAATTACAACGATAAACATCTCAA-TTT
*
23510748 TGGCAACTAAATAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAA
1 TGGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAA
* * * * * *
23510813 TTTACAACAAATATACACTTCAATTTATAGCATTAAAACACCTCAATTTACAACACTTGAACATC
66 TTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATC
* *
23510878 CCAATTAACAACATTTATACACCTTAATTACAGCGATAAACATCTCAATTT
131 CCAATTAACAACATTTATACACCTCAATTACAACGATAAACATCTCAATTT
** * * ** *
23510929 CCAGTAACTAAACAATTTAATTTTTAGCACTTAAACAATTCAATTTACATCATTTGAGCACCTCA
1 -TGGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCA
* * *
23510994 ATTTACAACAATTACACACTTCAATTTACAGCATTTACACACCTCAACTTATAACACTTTAACAT
65 ATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTTACAACACTTTAACAT
* * *
23511059 CCCAATTAACAACATTAAGACACCTCAATTACAGCGATAAAC
130 CCCAATTAACAACATTTATACACCTCAATTACAACGATAAAC
23511101 TTTAACATCC
Statistics
Matches: 642, Mismatches: 70, Indels: 10
0.89 0.10 0.01
Matches are distributed among these distances:
181 7 0.01
182 631 0.98
183 4 0.01
ACGTcount: A:0.41, C:0.24, G:0.05, T:0.30
Consensus pattern (181 bp):
TGGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTCAA
TTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATC
CCAATTAACAACATTTATACACCTCAATTACAACGATAAACATCTCAATTT
Found at i:23513496 original size:40 final size:40
Alignment explanation
Indices: 23513440--23513536 Score: 115
Period size: 40 Copynumber: 2.4 Consensus size: 40
23513430 TGGCATTTGG
23513440 ACAACAAACGCCGCTAAAAATCGA-ACACTAGCGGCGCATCT
1 ACAA-AAACGCCGCTAAAAATCGAGA-ACTAGCGGCGCATCT
* * *
23513481 ACAAAAACGCCGCTAAAGATCGAGAATTAGCGGCGCATTT
1 ACAAAAACGCCGCTAAAAATCGAGAACTAGCGGCGCATCT
** *
23513521 AGGAAAACGCGGCTAA
1 ACAAAAACGCCGCTAA
23513537 TAATAAGCAT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
40 44 0.90
41 5 0.10
ACGTcount: A:0.39, C:0.26, G:0.22, T:0.13
Consensus pattern (40 bp):
ACAAAAACGCCGCTAAAAATCGAGAACTAGCGGCGCATCT
Found at i:23513796 original size:41 final size:41
Alignment explanation
Indices: 23513734--23513833 Score: 137
Period size: 41 Copynumber: 2.4 Consensus size: 41
23513724 TGTCCCTGTT
* * *
23513734 GCGGCGTTTTTTGAAAAGCGCCTCTAATGCTCCTGCCTTTA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGATCCTGCCTTTA
* * *
23513775 GCGGTGTTTTTTAAAAAGCGCCGCTAATGATCTTGTCTTTA
1 GCGGCGTTTTTTAAAAAGCGCCGCTAATGATCCTGCCTTTA
*
23513816 GCGGCGTTTTCTAAAAAG
1 GCGGCGTTTTTTAAAAAG
23513834 TGCCACAAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 51 1.00
ACGTcount: A:0.21, C:0.21, G:0.23, T:0.35
Consensus pattern (41 bp):
GCGGCGTTTTTTAAAAAGCGCCGCTAATGATCCTGCCTTTA
Found at i:23513941 original size:156 final size:153
Alignment explanation
Indices: 23513660--23513958 Score: 352
Period size: 156 Copynumber: 1.9 Consensus size: 153
23513650 CTCGGGGGAC
* **
23513660 TTAGCGGCGATTTCTAAAAAGCGCCACAAAAAATCTAAGGCCAACGACGTTGTTTCTACGTTTTT
1 TTAGCGGCGATTTCTAAAAAGCGCCACAAAAAACCTAAGGCCAACGACGCCGTTTCTACGTTTTT
* * * * * ** *
23513725 GTCCCTGTTGCGGCGTTTTTTGAAAAGCGCCTCTAATGCTCCTGCCTTTAGCGGTGTTTTTTAAA
66 GGCCCTGTTGCGGCGTTTTGTGAAAAACGCCTCTAATGATCCTGCCTTTAGCAGCATTTTTGAAA
23513790 AAGCGCCGCTAATGATCTTGTCT
131 AAGCGCCGCTAATGATCTTGTCT
* * *
23513813 TTAGCGGCGTTTTCTAAAAAGTGCCACAAAAAAACCTAAGGCCAACGACGCCGTTTTCTATGTTT
1 TTAGCGGCGATTTCTAAAAAGCGCCAC-AAAAAACCTAAGGCCAACGACGCCG-TTTCTACG-TT
* * *
23513878 TTTGGGCCT-TTAGCGGCGTTTTGTGAAAAACG-TTGCTAATGATCC-GGCTGTTAGCAGCATTT
63 TTTGGCCCTGTT-GCGGCGTTTTGTGAAAAACGCCT-CTAATGATCCTGCCT-TTAGCAGCATTT
**
23513940 TTGAGGAAGCGCCGCTAAT
125 TTGAAAAAGCGCCGCTAAT
23513959 AGTAATAAAA
Statistics
Matches: 121, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
153 25 0.21
154 22 0.18
155 13 0.11
156 61 0.50
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (153 bp):
TTAGCGGCGATTTCTAAAAAGCGCCACAAAAAACCTAAGGCCAACGACGCCGTTTCTACGTTTTT
GGCCCTGTTGCGGCGTTTTGTGAAAAACGCCTCTAATGATCCTGCCTTTAGCAGCATTTTTGAAA
AAGCGCCGCTAATGATCTTGTCT
Found at i:23514876 original size:7 final size:7
Alignment explanation
Indices: 23514866--23514962 Score: 52
Period size: 7 Copynumber: 13.9 Consensus size: 7
23514856 TGGTTTTTGA
23514866 GTTTGGG
1 GTTTGGG
*
23514873 GTTT-AG
1 GTTTGGG
*
23514879 TTTTCGGG
1 GTTT-GGG
*
23514887 GTTAGGG
1 GTTTGGG
**
23514894 GTTTATG
1 GTTTGGG
23514901 GTTTGGG
1 GTTTGGG
23514908 GTTTGGG
1 GTTTGGG
* *
23514915 ATTTGTG
1 GTTTGGG
* * *
23514922 TTTTTGA
1 GTTTGGG
*
23514929 GTTTAGG
1 GTTTGGG
* *
23514936 GTTTAGT
1 GTTTGGG
23514943 GTTTGGG
1 GTTTGGG
*
23514950 GTTAGGG
1 GTTTGGG
23514957 GTTTGG
1 GTTTGG
23514963 AAATTTGGGG
Statistics
Matches: 64, Mismatches: 24, Indels: 4
0.70 0.26 0.04
Matches are distributed among these distances:
6 4 0.06
7 57 0.89
8 3 0.05
ACGTcount: A:0.08, C:0.01, G:0.43, T:0.47
Consensus pattern (7 bp):
GTTTGGG
Found at i:23514895 original size:21 final size:20
Alignment explanation
Indices: 23514870--23514960 Score: 76
Period size: 21 Copynumber: 4.3 Consensus size: 20
23514860 TTTTGAGTTT
23514870 GGGGTTTAGTTTTCGGGGTTA
1 GGGGTTTAGTTTT-GGGGTTA
* *
23514891 GGGGTTTATGGTTTGGGGTTT
1 GGGGTTTA-GTTTTGGGGTTA
* * * *
23514912 GGGATTTGTGTTTTTGAGTTTA
1 GGGGTTT-AG-TTTTGGGGTTA
23514934 -GGGTTTAGTGTTTGGGGTTA
1 GGGGTTTAGT-TTTGGGGTTA
23514954 GGGGTTT
1 GGGGTTT
23514961 GGAAATTTGG
Statistics
Matches: 53, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
19 1 0.02
20 9 0.17
21 32 0.60
22 11 0.21
ACGTcount: A:0.09, C:0.01, G:0.43, T:0.47
Consensus pattern (20 bp):
GGGGTTTAGTTTTGGGGTTA
Found at i:23516035 original size:19 final size:20
Alignment explanation
Indices: 23515994--23516037 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
23515984 AACTCTCATC
*
23515994 TCCCCTAAATCCCTAAAATT
1 TCCCCTAAATCCCTAAAAGT
* *
23516014 TCCCCT-AATCCCTCACAGT
1 TCCCCTAAATCCCTAAAAGT
23516033 TCCCC
1 TCCCC
23516038 AACGTAGTCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.25, C:0.45, G:0.02, T:0.27
Consensus pattern (20 bp):
TCCCCTAAATCCCTAAAAGT
Found at i:23518604 original size:56 final size:56
Alignment explanation
Indices: 23518510--23518639 Score: 206
Period size: 56 Copynumber: 2.3 Consensus size: 56
23518500 TAAAATTTCT
* * *
23518510 TAACTTATATAATATTAAGATAACTTATATAATATTAAGATAAAATTTCTAATTACA
1 TAACTTATATAATATT-ACATAACTTATATAATATTAAGATAAAATATCGAATTACA
*
23518567 TAACTTATATAATATTACATAACTTATATAATGTTAAGATAAAATATCGAATTACA
1 TAACTTATATAATATTACATAACTTATATAATATTAAGATAAAATATCGAATTACA
*
23518623 TAACTTATACAATATTA
1 TAACTTATATAATATTA
23518640 AGATAAAATA
Statistics
Matches: 68, Mismatches: 5, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
56 52 0.76
57 16 0.24
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.39
Consensus pattern (56 bp):
TAACTTATATAATATTACATAACTTATATAATATTAAGATAAAATATCGAATTACA
Found at i:23518630 original size:37 final size:37
Alignment explanation
Indices: 23518580--23518717 Score: 240
Period size: 37 Copynumber: 3.7 Consensus size: 37
23518570 CTTATATAAT
* *
23518580 ATTACATAACTTATATAATGTTAAGATAAAATATCGA
1 ATTACATAACTTATACAATATTAAGATAAAATATCGA
23518617 ATTACATAACTTATACAATATTAAGATAAAATATCGA
1 ATTACATAACTTATACAATATTAAGATAAAATATCGA
*
23518654 ATTACATAACTTATACAATATTAAGATAAAATTTCGA
1 ATTACATAACTTATACAATATTAAGATAAAATATCGA
*
23518691 ATTACATAACTTATATAATATTAAGAT
1 ATTACATAACTTATACAATATTAAGAT
23518718 TACTTTTATA
Statistics
Matches: 97, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.49, C:0.09, G:0.06, T:0.36
Consensus pattern (37 bp):
ATTACATAACTTATACAATATTAAGATAAAATATCGA
Found at i:23518743 original size:57 final size:57
Alignment explanation
Indices: 23518662--23518883 Score: 340
Period size: 57 Copynumber: 3.9 Consensus size: 57
23518652 GAATTACATA
*
23518662 ACTTATACAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
* *
23518719 ACTTTTATAATATTAAGATCAAATTTCGAATTACATAACTTATATAATATTAAGATT
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
* * * *
23518776 ACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTACATAA-ATT-ACATA
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
* * *
23518831 ACTTATATAATGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAA
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAA
23518884 CGTAAAATTT
Statistics
Matches: 149, Mismatches: 14, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
55 45 0.30
56 6 0.04
57 98 0.66
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.39
Consensus pattern (57 bp):
ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATT
Found at i:23518820 original size:9 final size:9
Alignment explanation
Indices: 23518806--23518840 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
23518796 AAATTTCTAA
23518806 TTACATAAC
1 TTACATAAC
*
23518815 TTACATAAA
1 TTACATAAC
23518824 TTACATAAC
1 TTACATAAC
*
23518833 TTATATAA
1 TTACATAA
23518841 TGTTAAGATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (9 bp):
TTACATAAC
Found at i:23518825 original size:18 final size:18
Alignment explanation
Indices: 23518804--23518840 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
23518794 TAAAATTTCT
23518804 AATTACATAACTTACATA
1 AATTACATAACTTACATA
*
23518822 AATTACATAACTTATATA
1 AATTACATAACTTACATA
23518840 A
1 A
23518841 TGTTAAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (18 bp):
AATTACATAACTTACATA
Found at i:23518872 original size:37 final size:37
Alignment explanation
Indices: 23518822--23518923 Score: 161
Period size: 37 Copynumber: 2.8 Consensus size: 37
23518812 AACTTACATA
*
23518822 AATTACATAACTTATATAATGTTAAGATAAAATATCG
1 AATTACATAACTTATATAATATTAAGATAAAATATCG
* *
23518859 AATTACATAACTTATACAATATTAACG-TAAAATTTCG
1 AATTACATAACTTATATAATATTAA-GATAAAATATCG
23518896 AATTACATAACTTATATAATATTAAGAT
1 AATTACATAACTTATATAATATTAAGAT
23518924 TACTTTATAA
Statistics
Matches: 59, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
36 1 0.02
37 57 0.97
38 1 0.02
ACGTcount: A:0.48, C:0.10, G:0.06, T:0.36
Consensus pattern (37 bp):
AATTACATAACTTATATAATATTAAGATAAAATATCG
Found at i:23518976 original size:37 final size:37
Alignment explanation
Indices: 23518925--23519011 Score: 133
Period size: 37 Copynumber: 2.4 Consensus size: 37
23518915 TATTAAGATT
*
23518925 ACTT-TATAATATTAAGATCAAATTTCGAATTACATA
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATA
*
23518961 ACTTATATAATATTAAGATAAAATTTCTAATTACATA
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATA
*
23518998 ACTTACATAA-ATTA
1 ACTTATATAATATTA
23519012 CATAACTTAT
Statistics
Matches: 47, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
36 8 0.17
37 39 0.83
ACGTcount: A:0.47, C:0.10, G:0.03, T:0.39
Consensus pattern (37 bp):
ACTTATATAATATTAAGATAAAATTTCGAATTACATA
Found at i:23518986 original size:185 final size:186
Alignment explanation
Indices: 23518776--23519165 Score: 755
Period size: 185 Copynumber: 2.1 Consensus size: 186
23518766 TATTAAGATT
23518776 ACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTACATAAATTACATAACTTATATAA
1 ACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTACATAAATTACATAACTTATATAA
23518841 TGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAACGTAAAATTTCGAATTACATAA
66 TGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAACGTAAAATTTCGAATTACATAA
*
23518906 CTTATATAATATTAAGATTAC-TTTATAATATTAAGATCAAATTTCGAATTACATA
131 CTTATATAATATTAAGATTACTTTTATAATATTAAGATAAAATTTCGAATTACATA
23518961 ACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTACATAAATTACATAACTTATATAA
1 ACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTACATAAATTACATAACTTATATAA
*
23519026 TGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAAGGTAAAATTTCGAATTACATAA
66 TGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAACGTAAAATTTCGAATTACATAA
23519091 CTTATATAATATTAAGATTACTTTTATAATATTAAGATAAAATTTCGAATTACATA
131 CTTATATAATATTAAGATTACTTTTATAATATTAAGATAAAATTTCGAATTACATA
23519147 ACTTATATAATATTAAGAT
1 ACTTATATAATATTAAGAT
23519166 TACTTAAATA
Statistics
Matches: 202, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
185 150 0.74
186 52 0.26
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.38
Consensus pattern (186 bp):
ACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTACATAAATTACATAACTTATATAA
TGTTAAGATAAAATATCGAATTACATAACTTATACAATATTAACGTAAAATTTCGAATTACATAA
CTTATATAATATTAAGATTACTTTTATAATATTAAGATAAAATTTCGAATTACATA
Found at i:23519005 original size:9 final size:9
Alignment explanation
Indices: 23518991--23519025 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
23518981 AAATTTCTAA
23518991 TTACATAAC
1 TTACATAAC
*
23519000 TTACATAAA
1 TTACATAAC
23519009 TTACATAAC
1 TTACATAAC
*
23519018 TTATATAA
1 TTACATAA
23519026 TGTTAAGATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.49, C:0.14, G:0.00, T:0.37
Consensus pattern (9 bp):
TTACATAAC
Found at i:23519010 original size:18 final size:18
Alignment explanation
Indices: 23518989--23519025 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
23518979 TAAAATTTCT
23518989 AATTACATAACTTACATA
1 AATTACATAACTTACATA
*
23519007 AATTACATAACTTATATA
1 AATTACATAACTTACATA
23519025 A
1 A
23519026 TGTTAAGATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (18 bp):
AATTACATAACTTACATA
Found at i:23519036 original size:55 final size:55
Alignment explanation
Indices: 23518952--23519057 Score: 185
Period size: 55 Copynumber: 1.9 Consensus size: 55
23518942 TCAAATTTCG
* *
23518952 AATTACATAACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTACATA
1 AATTACATAACTTATATAATATTAAGATAAAATATCGAATTACATAACTTACATA
*
23519007 AATTACATAACTTATATAATGTTAAGATAAAATATCGAATTACATAACTTA
1 AATTACATAACTTATATAATATTAAGATAAAATATCGAATTACATAACTTA
23519058 TACAATATTA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 48 1.00
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (55 bp):
AATTACATAACTTATATAATATTAAGATAAAATATCGAATTACATAACTTACATA
Found at i:23519057 original size:37 final size:37
Alignment explanation
Indices: 23519007--23519108 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
23518997 AACTTACATA
*
23519007 AATTACATAACTTATATAATGTTAAGATAAAATATCG
1 AATTACATAACTTATATAATATTAAGATAAAATATCG
* * *
23519044 AATTACATAACTTATACAATATTAAGGTAAAATTTCG
1 AATTACATAACTTATATAATATTAAGATAAAATATCG
23519081 AATTACATAACTTATATAATATTAAGAT
1 AATTACATAACTTATATAATATTAAGAT
23519109 TACTTTTATA
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 59 1.00
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.36
Consensus pattern (37 bp):
AATTACATAACTTATATAATATTAAGATAAAATATCG
Found at i:23519065 original size:92 final size:94
Alignment explanation
Indices: 23518776--23519165 Score: 576
Period size: 92 Copynumber: 4.2 Consensus size: 94
23518766 TATTAAGATT
*
23518776 ACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTACATAA-ATT-ACATAACTTATAT
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTACATAATATTAACATAACTTATAT
*
23518839 AATGTTAAGATAAAATATCGAATTACATA
66 AATATTAAGATAAAATATCGAATTACATA
* * * *
23518868 ACTTATACAATATTAACG-TAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTT-TA
1 ACTTATATAATATTAA-GATAAAATTTCGAATTACATAACTTACATAATATTAACATAACTTATA
* *
23518931 TAATATTAAGATCAAATTTCGAATTACATA
65 TAATATTAAGATAAAATATCGAATTACATA
*
23518961 ACTTATATAATATTAAGATAAAATTTCTAATTACATAACTTACATAA-ATT-ACATAACTTATAT
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTACATAATATTAACATAACTTATAT
*
23519024 AATGTTAAGATAAAATATCGAATTACATA
66 AATATTAAGATAAAATATCGAATTACATA
* * * * * *
23519053 ACTTATACAATATTAAGGTAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTTTAT
1 ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTACATAATATTAACATAACTTATAT
*
23519118 AATATTAAGATAAAATTTCGAATTACATA
66 AATATTAAGATAAAATATCGAATTACATA
23519147 ACTTATATAATATTAAGAT
1 ACTTATATAATATTAAGAT
23519166 TACTTAAATA
Statistics
Matches: 264, Mismatches: 27, Indels: 12
0.87 0.09 0.04
Matches are distributed among these distances:
91 7 0.03
92 118 0.45
93 78 0.30
94 61 0.23
ACGTcount: A:0.47, C:0.09, G:0.05, T:0.38
Consensus pattern (94 bp):
ACTTATATAATATTAAGATAAAATTTCGAATTACATAACTTACATAATATTAACATAACTTATAT
AATATTAAGATAAAATATCGAATTACATA
Found at i:23519132 original size:57 final size:57
Alignment explanation
Indices: 23519061--23519217 Score: 262
Period size: 57 Copynumber: 2.8 Consensus size: 57
23519051 TAACTTATAC
* **
23519061 AATATTAAGGTAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTTTAT
1 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTAAAT
23519118 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTAAAT
1 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTAAAT
* *
23519175 AATATTAAGATAAAATTTCTAATTACATAACTTACATAA-ATTA
1 AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTA
23519218 CATAACTTAC
Statistics
Matches: 95, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
56 4 0.04
57 91 0.96
ACGTcount: A:0.48, C:0.08, G:0.05, T:0.39
Consensus pattern (57 bp):
AATATTAAGATAAAATTTCGAATTACATAACTTATATAATATTAAGATTACTTAAAT
Found at i:23519211 original size:9 final size:9
Alignment explanation
Indices: 23519197--23519387 Score: 171
Period size: 9 Copynumber: 21.9 Consensus size: 9
23519187 AAATTTCTAA
23519197 TTACATAAC
1 TTACATAAC
*
23519206 TTACATAAA
1 TTACATAAC
23519215 TTACATAAC
1 TTACATAAC
*
23519224 TTACATAAA
1 TTACATAAC
*
23519233 TTAAATAAC
1 TTACATAAC
*
23519242 TTGCATAAC
1 TTACATAAC
*
23519251 TTAAATAAC
1 TTACATAAC
23519260 TTACATAA-
1 TTACATAAC
23519268 -TACATAACC
1 TTACATAA-C
*
23519277 TT-CCTAAC
1 TTACATAAC
* *
23519285 TTACATTAT
1 TTACATAAC
*
23519294 TTAGATAA-
1 TTACATAAC
* *
23519302 -TACGTAGC
1 TTACATAAC
*
23519310 CTACATAAC
1 TTACATAAC
23519319 TTACATAAC
1 TTACATAAC
*
23519328 TTACATAAA
1 TTACATAAC
*
23519337 TTAAATAAC
1 TTACATAAC
*
23519346 TTCCATAAC
1 TTACATAAC
*
23519355 TCACATAA-
1 TTACATAAC
*
23519363 -TACACAAC
1 TTACATAAC
23519371 TTACATAAC
1 TTACATAAC
23519380 TTACATAA
1 TTACATAA
23519388 TACATAAAAA
Statistics
Matches: 142, Mismatches: 32, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
7 16 0.11
8 3 0.02
9 122 0.86
10 1 0.01
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (9 bp):
TTACATAAC
Found at i:23519285 original size:34 final size:34
Alignment explanation
Indices: 23519198--23519423 Score: 145
Period size: 34 Copynumber: 6.8 Consensus size: 34
23519188 AATTTCTAAT
*
23519198 TACATAA-CTTACATAAATTACATAACTTACATAAA
1 TACATAACCTT-CATAACTTACATAACTTACAT-AA
* *
23519233 TTAAATAA-CTTGCATAACTTAAATAACTTACATAA
1 -TACATAACCTT-CATAACTTACATAACTTACATAA
* * * *
23519268 TACATAACCTTCCTAACTTACATTATTTAGATAA
1 TACATAACCTTCATAACTTACATAACTTACATAA
* * *
23519302 TACGTAGCCTACATAACTTACATAACTTACATAA
1 TACATAACCTTCATAACTTACATAACTTACATAA
* * *
23519336 -A-TTAA-----ATAACTTCCATAACTCACATAA
1 TACATAACCTTCATAACTTACATAACTTACATAA
*
23519363 TACACAA-CTTACATAACTTACATAA--TACATAA
1 TACATAACCTT-CATAACTTACATAACTTACATAA
* *
23519395 -AAATATATCATATCATAACTTACATAACT
1 TACATA-A-CCT-TCATAACTTACATAACT
23519424 CATTTATAGT
Statistics
Matches: 148, Mismatches: 28, Indels: 28
0.73 0.14 0.14
Matches are distributed among these distances:
27 20 0.14
28 1 0.01
29 2 0.01
31 3 0.02
32 9 0.06
33 1 0.01
34 78 0.53
35 6 0.04
36 28 0.19
ACGTcount: A:0.46, C:0.19, G:0.02, T:0.32
Consensus pattern (34 bp):
TACATAACCTTCATAACTTACATAACTTACATAA
Found at i:23519372 original size:86 final size:85
Alignment explanation
Indices: 23519193--23519390 Score: 213
Period size: 86 Copynumber: 2.3 Consensus size: 85
23519183 GATAAAATTT
* * * * *
23519193 CTAA-TTACATAACTTACATAAATTACATAACTTACATAAATTAAATAACTTGCATAACTTAAAT
1 CTAACTTACATAACTTACAT-AA-TACGTAGCCTACATAAATTAAATAACTTACATAAATTAAAT
*
23519257 AACTTACATAATACATAACCTTC
64 AACTTACATAATACATAA-CTAC
* * * * *
23519280 CTAACTTACATTATTTAGATAATACGTAGCCTACATAACTTACATAACTTACATAAATTAAATAA
1 CTAACTTACATAACTTACATAATACGTAGCCTACATAAATTAAATAACTTACATAAATTAAATAA
*
23519345 CTTCCATAACTCACATAA-TAC
66 CTTACATAA-T-ACATAACTAC
23519366 AC-AACTTACATAACTTACATAATAC
1 -CTAACTTACATAACTTACATAATAC
23519391 ATAAAAATAT
Statistics
Matches: 92, Mismatches: 15, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
86 66 0.72
87 8 0.09
88 18 0.20
ACGTcount: A:0.45, C:0.20, G:0.02, T:0.32
Consensus pattern (85 bp):
CTAACTTACATAACTTACATAATACGTAGCCTACATAAATTAAATAACTTACATAAATTAAATAA
CTTACATAATACATAACTAC
Found at i:23525286 original size:12 final size:12
Alignment explanation
Indices: 23525269--23525293 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
23525259 CGCTAAAGAA
23525269 CATGTTCTTTAG
1 CATGTTCTTTAG
23525281 CATGTTCTTTAG
1 CATGTTCTTTAG
23525293 C
1 C
23525294 GGTGCTTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.20, G:0.16, T:0.48
Consensus pattern (12 bp):
CATGTTCTTTAG
Found at i:23525343 original size:42 final size:42
Alignment explanation
Indices: 23525281--23525422 Score: 232
Period size: 42 Copynumber: 3.4 Consensus size: 42
23525271 TGTTCTTTAG
* *
23525281 CATGTTCTTTAGCGGTGCTTAGAAAAAAACGCTGCTAAAGAC
1 CATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAC
23525323 CATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAC
1 CATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAC
*
23525365 CATGTTCTTTAGCGGCGCTTA-AGAAAAAACGCCGCTAAAGAA
1 CATGTTCTTTAGCGGCGCTTAGA-AAAAAACGCCGCTAAAGAC
*
23525407 CATGATCTTTAGCGGC
1 CATGTTCTTTAGCGGC
23525423 ATTTTTATCT
Statistics
Matches: 95, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
41 1 0.01
42 94 0.99
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (42 bp):
CATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGAC
Found at i:23525445 original size:84 final size:83
Alignment explanation
Indices: 23525281--23525510 Score: 221
Period size: 84 Copynumber: 2.8 Consensus size: 83
23525271 TGTTCTTTAG
* * * * * **
23525281 CATGTTCTTTAGCGGTGCTTAGAAAAAAACGCTGCTAAAGACCATGTTCTTTAGCGGCGCTTAGA
1 CATGTTCTTTAGCGGCGCTTAG-AAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTA
*
23525346 AAAAAACGCCGCTAAAGAC
65 AAAAAACGCCGCTAAAGAA
*
23525365 CATGTTCTTTAGCGGCGCTTAAGAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTA
1 CATGTTCTTTAGCGGCGCTT-AGAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTA
*** * *
23525430 TCTAAGCGCCTCTAAAGAA
65 AAAAAACGCCGCTAAAGAA
* ***** * *
23525449 CATGGTCTTTA-CTGGCG-TTTTTTTAAGCGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
1 CATGTTCTTTAGC-GGCGCTTAGAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
23525511 GTTTGTAAAC
Statistics
Matches: 121, Mismatches: 23, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
82 35 0.29
83 3 0.02
84 81 0.67
85 2 0.02
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (83 bp):
CATGTTCTTTAGCGGCGCTTAGAAAAAACGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTAA
AAAAACGCCGCTAAAGAA
Found at i:23525487 original size:40 final size:42
Alignment explanation
Indices: 23525394--23525510 Score: 177
Period size: 40 Copynumber: 2.8 Consensus size: 42
23525384 TAAGAAAAAA
* *
23525394 CGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTATCTAAG
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTATCTAAG
*
23525436 CGCCTCTAAAGAACATGGTCTTTA-CTGGCGTTTTT-T-TAAG
1 CGCCGCTAAAGAACATGGTCTTTAGC-GGCGTTTTTATCTAAG
23525476 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
1 CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTT
23525511 GTTTGTAAAC
Statistics
Matches: 69, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
40 36 0.52
41 3 0.04
42 30 0.43
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.33
Consensus pattern (42 bp):
CGCCGCTAAAGAACATGGTCTTTAGCGGCGTTTTTATCTAAG
Found at i:23525961 original size:7 final size:7
Alignment explanation
Indices: 23525949--23525973 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
23525939 ACTTAAATAA
23525949 ATGTATT
1 ATGTATT
23525956 ATGTATT
1 ATGTATT
23525963 ATGTATT
1 ATGTATT
23525970 ATGT
1 ATGT
23525974 TATATTGATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.16, T:0.56
Consensus pattern (7 bp):
ATGTATT
Found at i:23526466 original size:46 final size:46
Alignment explanation
Indices: 23526416--23527876 Score: 705
Period size: 46 Copynumber: 32.1 Consensus size: 46
23526406 ACTAAACAAT
* * * * *
23526416 TCAATTTCCAGCACTTAAACACTTT-AATTTACATCATTTGAGCACC
1 TCAATTTACAACACTTAAACA-TTTCAATTTACAACATTTAAACACC
*
23526462 TCAATTTACAACAGTTAAACATTTCAATTTACAACATTTAAACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * ** * *
23526508 TCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * ** **
23526554 TTAA-TTACAATGA--TAAACATCTCAATTTCCAACAACTAAACAAT
1 TCAATTTACAA-CACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * * *
23526598 TCAATTTGCAACGCTTAAACACTTCAATTTACATCATTTGAGCACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * *
23526644 TCAATTTACAATAATTAAACAATTCAATTTACAGCATTTAAACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* ** ** * * *
23526690 TCAACTTACAACACTTTCACATCCCAATTAACAACATTTATACAAC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * ** **
23526736 TTAA-TTACAGCGA--TAAACATCTCAATTT-CTAGCAACTAAACAAT
1 TCAATTTACAAC-ACTTAAACATTTCAATTTAC-AACATTTAAACACC
* * * * * * * *
23526780 TCAATTTGCAGCAATT--ACACTTCAATTTACATCATTTGAGCACA
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * *
23526824 TCAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * ** * *
23526870 TCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * ** **
23526916 TCAA-TTACAGCGA--TAAACATCTCAATTTCCAGCAACTAAACAAT
1 TCAATTTACAAC-ACTTAAACATTTCAATTTACAACATTTAAACACC
* ** * *
23526960 TCAATTTGCAACACTTAAACATTTCAATTTACGTCATTTGAGCACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * *
23527006 TCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* ** ** * *
23527052 TCAACTTACAACACTTTCACATCCCAATTAACAACATTTATACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * ** **
23527098 TTAA-TTACAGCGA--TAAACATCTCAATTT-CTAGCAACTAAACAAT
1 TCAATTTACAAC-ACTTAAACATTTCAATTTAC-AACATTTAAACACC
* * * * * * *
23527142 TCAATTTGCAGCACTT--ACACTTCAATTTACATCATTTGAGCACA
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * *
23527186 TCAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * ** * * * ***
23527232 TCAACTTACAACACTTTAACATCCCAGTTAACAATATTTATTGACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * * ** *
23527278 TTAA-TTACAGCGA--TAAACATCTCAATTTCCAGCAACTAAACACT
1 TCAATTTACAAC-ACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * *
23527322 TCAATTTGA-AGCACTTAAACACTTCAATTTACATCATTTGAGCACC
1 TCAATTT-ACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * * * * * * *
23527368 TTAATTTATAGCAATTAAACACTTCTATTTATAGCCTTTAACCACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * ** * *
23527414 TCAACTTACAACACTTTAACATCCCAATTAACAACATTTATACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * ** ** ** **
23527460 TCAA-TTATAGCA-AGAAAC-TTGTCAATTT-CTGGCAACTAAACAAT
1 TCAATTTACAACACTTAAACATT-TCAATTTAC-AACATTTAAACACC
* * * * * *
23527504 TCAATTTGCAGCACTTAAACACTTCAATTTACATCATTTGATCACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * *
23527550 TGAATTTACAGCAATTAAACACTTCAATTTACAGCATTTAAACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * ** * * *
23527596 TCAACTTACAACACTTTAACATCCCAATTAACAAAATTTATACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * ** **
23527642 TCAA-TTACAACGA--TAAACATCTCAATTTTCAGCAAGTAAACAAT
1 TCAATTTACAAC-ACTTAAACATTTCAATTTACAACATTTAAACACC
* * ** * *
23527686 TTAATTTGCAGTACTTAAAACACTTCAATTTACAACATTTAAACACT
1 TCAATTTACAACACTT-AAACATTTCAATTTACAACATTTAAACACC
* ** * * * * * *
23527733 TCAATTTGCTGCACTTTAACACTTCAATTCACAACACTTAAATACT
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
** * * * *
23527779 TCAATTTGTAACACTTTAACACTTCAATATACAACATTTAAACACT
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
* * * * * * *
23527825 TCAATTTACAGCACTTTAACATCTCTATTAACAATATTTATACACC
1 TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
23527871 TCAATT
1 TCAATT
23527877 ACAGTAATAA
Statistics
Matches: 1047, Mismatches: 326, Indels: 84
0.72 0.22 0.06
Matches are distributed among these distances:
43 4 0.00
44 222 0.21
45 86 0.08
46 697 0.67
47 38 0.04
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.31
Consensus pattern (46 bp):
TCAATTTACAACACTTAAACATTTCAATTTACAACATTTAAACACC
Found at i:23526467 original size:23 final size:23
Alignment explanation
Indices: 23526416--23527876 Score: 512
Period size: 23 Copynumber: 64.3 Consensus size: 23
23526406 ACTAAACAAT
* * * *
23526416 TCAATTTCCAGCACTTAAACACT
1 TCAATTTACAACATTTAAACACC
* * * *
23526439 TTAATTTACATCATTTGAGCACC
1 TCAATTTACAACATTTAAACACC
* **
23526462 TCAATTTACAACAGTTAAACATT
1 TCAATTTACAACATTTAAACACC
23526485 TCAATTTACAACATTTAAACACC
1 TCAATTTACAACATTTAAACACC
*
23526508 TCAACTTACAACACTTT-AACATCC
1 TCAATTTACAACA-TTTAAACA-CC
* *
23526532 -CAATTAACAACATTTATACACC
1 TCAATTTACAACATTTAAACACC
* * *
23526554 TTAA-TTAC-A-ATGATAAACATC
1 TCAATTTACAACAT-TTAAACACC
* ** **
23526575 TCAATTTCCAACAACTAAACAAT
1 TCAATTTACAACATTTAAACACC
* ** *
23526598 TCAATTTGCAACGCTTAAACACT
1 TCAATTTACAACATTTAAACACC
* * *
23526621 TCAATTTACATCATTTGAGCACC
1 TCAATTTACAACATTTAAACACC
* * **
23526644 TCAATTTACAATAATTAAACAAT
1 TCAATTTACAACATTTAAACACC
*
23526667 TCAATTTACAGCATTTAAACACC
1 TCAATTTACAACATTTAAACACC
* *
23526690 TCAACTTACAACACTTT-CACATCC
1 TCAATTTACAACA-TTTAAACA-CC
* * *
23526714 -CAATTAACAACATTTATACAAC
1 TCAATTTACAACATTTAAACACC
* * *
23526736 TTAA-TTACAGCGA--TAAACATC
1 TCAATTTACAAC-ATTTAAACACC
* ** **
23526757 TCAATTT-CTAGCAACTAAACAAT
1 TCAATTTAC-AACATTTAAACACC
* * * *
23526780 TCAATTTGCAGCAATT--ACACT
1 TCAATTTACAACATTTAAACACC
* * * *
23526801 TCAATTTACATCATTTGAGCACA
1 TCAATTTACAACATTTAAACACC
* * **
23526824 TCAAATTACAACAATTAAACAAT
1 TCAATTTACAACATTTAAACACC
* *
23526847 TCAATTGACAGCATTTAAACACC
1 TCAATTTACAACATTTAAACACC
*
23526870 TCAACTTACAACACTTT-AACATCC
1 TCAATTTACAACA-TTTAAACA-CC
* *
23526894 -CAATTAACAACATTTATACACC
1 TCAATTTACAACATTTAAACACC
* *
23526916 TCAA-TTACAGCGA--TAAACATC
1 TCAATTTACAAC-ATTTAAACACC
* * ** **
23526937 TCAATTTCCAGCAACTAAACAAT
1 TCAATTTACAACATTTAAACACC
* * **
23526960 TCAATTTGCAACACTTAAACATT
1 TCAATTTACAACATTTAAACACC
** * *
23526983 TCAATTTACGTCATTTGAGCACC
1 TCAATTTACAACATTTAAACACC
* *
23527006 TCAATTTACAACAATTAAACACT
1 TCAATTTACAACATTTAAACACC
*
23527029 TCAATTTACAGCATTTAAACACC
1 TCAATTTACAACATTTAAACACC
* *
23527052 TCAACTTACAACACTTT-CACATCC
1 TCAATTTACAACA-TTTAAACA-CC
* *
23527076 -CAATTAACAACATTTATACACC
1 TCAATTTACAACATTTAAACACC
* * *
23527098 TTAA-TTACAGCGA--TAAACATC
1 TCAATTTACAAC-ATTTAAACACC
* ** **
23527119 TCAATTT-CTAGCAACTAAACAAT
1 TCAATTTAC-AACATTTAAACACC
* * * *
23527142 TCAATTTGCAGCACTT--ACACT
1 TCAATTTACAACATTTAAACACC
* * * *
23527163 TCAATTTACATCATTTGAGCACA
1 TCAATTTACAACATTTAAACACC
* * **
23527186 TCAAATTACAACAATTAAACAAT
1 TCAATTTACAACATTTAAACACC
* *
23527209 TCAATTGACAGCATTTAAACACC
1 TCAATTTACAACATTTAAACACC
*
23527232 TCAACTTACAACACTTT-AACATCC
1 TCAATTTACAACA-TTTAAACA-CC
* * * ***
23527256 -CAGTTAACAATATTTATTGACC
1 TCAATTTACAACATTTAAACACC
* * *
23527278 TTAA-TTACAGCGA--TAAACATC
1 TCAATTTACAAC-ATTTAAACACC
* * ** *
23527299 TCAATTTCCAGCAACTAAACACT
1 TCAATTTACAACATTTAAACACC
* * *
23527322 TCAATTTGA-AGCACTTAAACACT
1 TCAATTT-ACAACATTTAAACACC
* * *
23527345 TCAATTTACATCATTTGAGCACC
1 TCAATTTACAACATTTAAACACC
* * * * *
23527368 TTAATTTATAGCAATTAAACACT
1 TCAATTTACAACATTTAAACACC
* * * * *
23527391 TCTATTTATAGCCTTTAACCACC
1 TCAATTTACAACATTTAAACACC
*
23527414 TCAACTTACAACACTTT-AACATCC
1 TCAATTTACAACA-TTTAAACA-CC
* *
23527438 -CAATTAACAACATTTATACACC
1 TCAATTTACAACATTTAAACACC
* * ** ***
23527460 TCAA-TTATAGCA-AGAAACTTG
1 TCAATTTACAACATTTAAACACC
** ** **
23527481 TCAATTT-CTGGCAACTAAACAAT
1 TCAATTTAC-AACATTTAAACACC
* * * *
23527504 TCAATTTGCAGCACTTAAACACT
1 TCAATTTACAACATTTAAACACC
* * *
23527527 TCAATTTACATCATTTGATCACC
1 TCAATTTACAACATTTAAACACC
* * * *
23527550 TGAATTTACAGCAATTAAACACT
1 TCAATTTACAACATTTAAACACC
*
23527573 TCAATTTACAGCATTTAAACACC
1 TCAATTTACAACATTTAAACACC
*
23527596 TCAACTTACAACACTTT-AACATCC
1 TCAATTTACAACA-TTTAAACA-CC
* * *
23527620 -CAATTAACAAAATTTATACACC
1 TCAATTTACAACATTTAAACACC
*
23527642 TCAA-TTACAACGA--TAAACATC
1 TCAATTTACAAC-ATTTAAACACC
* * ** **
23527663 TCAATTTTCAGCAAGTAAACAAT
1 TCAATTTACAACATTTAAACACC
* * * *
23527686 TTAATTTGCAGTAC-TTAAAACACT
1 TCAATTTACA--ACATTTAAACACC
*
23527710 TCAATTTACAACATTTAAACACT
1 TCAATTTACAACATTTAAACACC
* ** *
23527733 TCAATTTGCTGCACTTT-AACACT
1 TCAATTTACAACA-TTTAAACACC
* * * *
23527756 TCAATTCACAACACTTAAATACT
1 TCAATTTACAACATTTAAACACC
** *
23527779 TCAATTTGTAACACTTT-AACACT
1 TCAATTTACAACA-TTTAAACACC
* *
23527802 TCAATATACAACATTTAAACACT
1 TCAATTTACAACATTTAAACACC
* *
23527825 TCAATTTACAGCACTTT-AACATC
1 TCAATTTACAACA-TTTAAACACC
* * * *
23527848 TCTATTAACAATATTTATACACC
1 TCAATTTACAACATTTAAACACC
23527871 TCAATT
1 TCAATT
23527877 ACAGTAATAA
Statistics
Matches: 1062, Mismatches: 301, Indels: 150
0.70 0.20 0.10
Matches are distributed among these distances:
20 2 0.00
21 103 0.10
22 112 0.11
23 783 0.74
24 61 0.06
25 1 0.00
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.31
Consensus pattern (23 bp):
TCAATTTACAACATTTAAACACC
Found at i:23526691 original size:182 final size:182
Alignment explanation
Indices: 23526384--23527739 Score: 2063
Period size: 182 Copynumber: 7.5 Consensus size: 182
23526374 GGGGTGTTAC
* ** * *
23526384 ATAAACATCTCAATTTCTAAAAACTAAACAATTCAATTTCCAGCACTTAAACACTTTAATTTACA
1 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
* * *
23526449 TCATTTGAGCACCTCAATTTACAACAGTTAAACATTTCAATTTACAACATTTAAACACCTCAACT
66 TCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAATTTACAGCATTTAAACACCTCAACT
**
23526514 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAATG
131 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCG
* * *
23526566 ATAAACATCTCAATTTCCAACAACTAAACAATTCAATTTGCAACGCTTAAACACTTCAATTTACA
1 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
*
23526631 TCATTTGAGCACCTCAATTTACAATAATTAAACAATTCAATTTACAGCATTTAAACACCTCAACT
66 TCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAATTTACAGCATTTAAACACCTCAACT
* *
23526696 TACAACACTTTCACATCCCAATTAACAACATTTATACAACTTAATTACAGCG
131 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCG
* *
23526748 ATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTGCAGCAATT--ACACTTCAATTTACA
1 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
* * *
23526811 TCATTTGAGCACATCAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACCTCAACT
66 TCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAATTTACAGCATTTAAACACCTCAACT
*
23526876 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCG
131 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCG
* * *
23526928 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAACACTTAAACATTTCAATTTACG
1 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
*
23526993 TCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACT
66 TCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAATTTACAGCATTTAAACACCTCAACT
*
23527058 TACAACACTTTCACATCCCAATTAACAACATTTATACACCTTAATTACAGCG
131 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCG
*
23527110 ATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTGCAGCACTT--ACACTTCAATTTACA
1 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
* * *
23527173 TCATTTGAGCACATCAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACCTCAACT
66 TCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAATTTACAGCATTTAAACACCTCAACT
* * **
23527238 TACAACACTTTAACATCCCAGTTAACAATATTTATTGACCTTAATTACAGCG
131 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCG
* *
23527290 ATAAACATCTCAATTTCCAGCAACTAAACACTTCAATTTGAAGCACTTAAACACTTCAATTTACA
1 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
* * * * * * * *
23527355 TCATTTGAGCACCTTAATTTATAGCAATTAAACACTTCTATTTATAGCCTTTAACCACCTCAACT
66 TCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAATTTACAGCATTTAAACACCTCAACT
* * *
23527420 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTATAGCA
131 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCG
* * * **
23527472 AGAAACTTGTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
1 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
* * * *
23527537 TCATTTGATCACCTGAATTTACAGCAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACT
66 TCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAATTTACAGCATTTAAACACCTCAACT
* * *
23527602 TACAACACTTTAACATCCCAATTAACAAAATTTATACACCTCAATTACAACG
131 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCG
* * * *
23527654 ATAAACATCTCAATTTTCAGCAAGTAAACAATTTAATTTGCAGTACTTAAAACACTTCAATTTAC
1 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTT-AAACACTTCAATTTAC
* * * *
23527719 AACATTTAAACACTTCAATTT
65 ATCATTTGAGCACCTCAATTT
23527740 GCTGCACTTT
Statistics
Matches: 1066, Mismatches: 103, Indels: 9
0.90 0.09 0.01
Matches are distributed among these distances:
180 336 0.32
182 698 0.65
183 32 0.03
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.31
Consensus pattern (182 bp):
ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
TCATTTGAGCACCTCAATTTACAACAATTAAACAATTCAATTTACAGCATTTAAACACCTCAACT
TACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAGCG
Found at i:23527106 original size:362 final size:363
Alignment explanation
Indices: 23526384--23527739 Score: 2115
Period size: 362 Copynumber: 3.7 Consensus size: 363
23526374 GGGGTGTTAC
** * *
23526384 ATAAACATCTCAATTTCTAAAAACTAAACAATTCAATTTCCAGCACTTAAACACTTTAATTTACA
1 ATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTGCAGCACTT-AACACTTCAATTTACA
* * * * * *
23526449 TCATTTGAGCACCTCAATTTACAACAGTTAAACATTTCAATTTACAACATTTAAACACCTCAACT
65 TCATTTGAGCACATCAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACCTCAACT
* *
23526514 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAATGATAAACATCTCAA
130 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAACGATAAACATCTCAA
* *
23526579 TTTCCAACAACTAAACAATTCAATTTGCAACGCTTAAACACTTCAATTTACATCATTTGAGCACC
195 TTTCCAGCAACTAAACAATTCAATTTGCAACACTTAAACACTTCAATTTACATCATTTGAGCACC
* *
23526644 TCAATTTACAATAATTAAACAATTCAATTTACAGCATTTAAACACCTCAACTTACAACACTTTCA
260 TCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTTACAACACTTTCA
*
23526709 CATCCCAATTAACAACATTTATACAACTTAATTACAGCG
325 CATCCCAATTAACAACATTTATACACCTTAATTACAGCG
*
23526748 ATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTGCAGCAATT-ACACTTCAATTTACAT
1 ATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTGCAGCACTTAACACTTCAATTTACAT
23526812 CATTTGAGCACATCAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACCTCAACTT
66 CATTTGAGCACATCAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACCTCAACTT
*
23526877 ACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAGCGATAAACATCTCAAT
131 ACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAACGATAAACATCTCAAT
* *
23526942 TTCCAGCAACTAAACAATTCAATTTGCAACACTTAAACATTTCAATTTACGTCATTTGAGCACCT
196 TTCCAGCAACTAAACAATTCAATTTGCAACACTTAAACACTTCAATTTACATCATTTGAGCACCT
23527007 CAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTTACAACACTTTCAC
261 CAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTTACAACACTTTCAC
23527072 ATCCCAATTAACAACATTTATACACCTTAATTACAGCG
326 ATCCCAATTAACAACATTTATACACCTTAATTACAGCG
23527110 ATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTGCAGCACTT-ACACTTCAATTTACAT
1 ATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTGCAGCACTTAACACTTCAATTTACAT
23527174 CATTTGAGCACATCAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACCTCAACTT
66 CATTTGAGCACATCAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACCTCAACTT
* * ** * *
23527239 ACAACACTTTAACATCCCAGTTAACAATATTTATTGACCTTAATTACAGCGATAAACATCTCAAT
131 ACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAACGATAAACATCTCAAT
*
23527304 TTCCAGCAACTAAACACTTCAATTTG-AAGCACTTAAACACTTCAATTTACATCATTTGAGCACC
196 TTCCAGCAACTAAACAATTCAATTTGCAA-CACTTAAACACTTCAATTTACATCATTTGAGCACC
* * * * * * * *
23527368 TTAATTTATAGCAATTAAACACTTCTATTTATAGCCTTTAACCACCTCAACTTACAACACTTTAA
260 TCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTTACAACACTTTCA
* * *
23527433 CATCCCAATTAACAACATTTATACACCTCAATTATAGCA
325 CATCCCAATTAACAACATTTATACACCTTAATTACAGCG
* * * *
23527472 AGAAACTTGTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
1 ATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTGCAGCACTT-AACACTTCAATTTACA
* * * * * * *
23527537 TCATTTGATCACCTGAATTTACAGCAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACT
65 TCATTTGAGCACATCAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACCTCAACT
*
23527602 TACAACACTTTAACATCCCAATTAACAAAATTTATACACCTCAATTACAACGATAAACATCTCAA
130 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAACGATAAACATCTCAA
* * * ** * * *
23527667 TTTTCAGCAAGTAAACAATTTAATTTGCAGTACTTAAAACACTTCAATTTACAACATTTAAACAC
195 TTTCCAGCAACTAAACAATTCAATTTGCAACACTT-AAACACTTCAATTTACATCATTTGAGCAC
*
23527732 TTCAATTT
259 CTCAATTT
23527740 GCTGCACTTT
Statistics
Matches: 918, Mismatches: 69, Indels: 9
0.92 0.07 0.01
Matches are distributed among these distances:
361 2 0.00
362 680 0.74
364 203 0.22
365 33 0.04
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.31
Consensus pattern (363 bp):
ATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTGCAGCACTTAACACTTCAATTTACAT
CATTTGAGCACATCAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACCTCAACTT
ACAACACTTTAACATCCCAATTAACAACATTTATACACCTCAATTACAACGATAAACATCTCAAT
TTCCAGCAACTAAACAATTCAATTTGCAACACTTAAACACTTCAATTTACATCATTTGAGCACCT
CAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTTACAACACTTTCAC
ATCCCAATTAACAACATTTATACACCTTAATTACAGCG
Found at i:23527416 original size:544 final size:543
Alignment explanation
Indices: 23526384--23527725 Score: 2087
Period size: 544 Copynumber: 2.5 Consensus size: 543
23526374 GGGGTGTTAC
** *
23526384 ATAAACATCTCAATTTCTAAAAACTAAACAATTCAATTTCCAGCACTTAAACACTTT-AATTTAC
1 ATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTGCAGCACTTAAACA-TTTCAATTTAC
* * *
23526448 ATCATTTGAGCACCTCAATTTACAACAGTTAAACATTTCAATTTACAACATTTAAACACCTCAAC
65 ATCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAAC
*
23526513 TTACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAATGATAAACATCTCA
130 TTACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAACGATAAACATCTCA
* * * *
23526578 ATTTCCAACAACTAAACAATTCAATTTGCAACGCTTAAACACTTCAATTTACATCATTTGAGCAC
195 ATTTCTAGCAACTAAACAATTCAATTTGCAGCACTT-AACACTTCAATTTACATCATTTGAGCAC
* * * * *
23526643 CTCAATTTACAATAATTAAACAATTCAATTTACAGCATTTAAACACCTCAACTTACAACACTTTC
259 ATCAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACCTCAACTTACAACACTTTA
*
23526708 ACATCCCAATTAACAACATTTATACAACTTAATTACAGCGATAAACATCTCAATTTCTAGCAACT
324 ACATCCCAATTAACAACATTTATACAACTTAATTACAGCGATAAACATCTCAATTTCCAGCAACT
*
23526773 AAACAATTCAATTTGCAGCAATTACACTTCAATTTACATCATTTGAGCACATCAAATTACAACAA
389 AAACAATTCAATTTGAAGCAATTACACTTCAATTTACATCATTTGAGCACATCAAATTACAACAA
23526838 TTAAACAATTCAATTGACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACA
454 TTAAACAATTCAATTGACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACA
*
23526903 ACATTTATACACCTCAATTACAGCG
519 ACATTTATACACCTCAATTACAGCA
* * *
23526928 ATAAACATCTCAATTTCCAGCAACTAAACAATTCAATTTGCAACACTTAAACATTTCAATTTACG
1 ATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTGCAGCACTTAAACATTTCAATTTACA
23526993 TCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACT
66 TCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACT
* *
23527058 TACAACACTTTCACATCCCAATTAACAACATTTATACACCTTAATTACAGCGATAAACATCTCAA
131 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAACGATAAACATCTCAA
23527123 TTTCTAGCAACTAAACAATTCAATTTGCAGCACTT-ACACTTCAATTTACATCATTTGAGCACAT
196 TTTCTAGCAACTAAACAATTCAATTTGCAGCACTTAACACTTCAATTTACATCATTTGAGCACAT
23527187 CAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACCTCAACTTACAACACTTTAAC
261 CAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACCTCAACTTACAACACTTTAAC
* * ** *
23527252 ATCCCAGTTAACAATATTTATTGACCTTAATTACAGCGATAAACATCTCAATTTCCAGCAACTAA
326 ATCCCAATTAACAACATTTATACAACTTAATTACAGCGATAAACATCTCAATTTCCAGCAACTAA
* * * * * * *
23527317 ACACTTCAATTTGAAGCACTTAAACACTTCAATTTACATCATTTGAGCACCTTAATTTATAGCAA
391 ACAATTCAATTTGAAGCAATT--ACACTTCAATTTACATCATTTGAGCACATCAAATTACAACAA
* * * * * *
23527382 TTAAACACTTCTATTTATAGCCTTTAACCACCTCAACTTACAACACTTTAACATCCCAATTAACA
454 TTAAACAATTCAATTGACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACA
*
23527447 ACATTTATACACCTCAATTATAGCA
519 ACATTTATACACCTCAATTACAGCA
* * * * *
23527472 AGAAACTTGTCAATTTCTGGCAACTAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACA
1 ATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTGCAGCACTTAAACATTTCAATTTACA
* * *
23527537 TCATTTGATCACCTGAATTTACAGCAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACT
66 TCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACT
* *
23527602 TACAACACTTTAACATCCCAATTAACAAAATTTATACACCTCAATTACAACGATAAACATCTCAA
131 TACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAACGATAAACATCTCAA
* * * *
23527667 TTT-TCAGCAAGTAAACAATTTAATTTGCAGTACTTAAAACACTTCAATTTACAACATTT
196 TTTCT-AGCAACTAAACAATTCAATTTGCAGCACTT--AACACTTCAATTTACATCATTT
23527726 AAACACTTCA
Statistics
Matches: 729, Mismatches: 62, Indels: 11
0.91 0.08 0.01
Matches are distributed among these distances:
542 166 0.23
543 4 0.01
544 539 0.74
547 20 0.03
ACGTcount: A:0.40, C:0.24, G:0.05, T:0.31
Consensus pattern (543 bp):
ATAAACATCTCAATTTCTAGCAACTAAACAATTCAATTTGCAGCACTTAAACATTTCAATTTACA
TCATTTGAGCACCTCAATTTACAACAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACT
TACAACACTTTAACATCCCAATTAACAACATTTATACACCTTAATTACAACGATAAACATCTCAA
TTTCTAGCAACTAAACAATTCAATTTGCAGCACTTAACACTTCAATTTACATCATTTGAGCACAT
CAAATTACAACAATTAAACAATTCAATTGACAGCATTTAAACACCTCAACTTACAACACTTTAAC
ATCCCAATTAACAACATTTATACAACTTAATTACAGCGATAAACATCTCAATTTCCAGCAACTAA
ACAATTCAATTTGAAGCAATTACACTTCAATTTACATCATTTGAGCACATCAAATTACAACAATT
AAACAATTCAATTGACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTAACAAC
ATTTATACACCTCAATTACAGCA
Found at i:23527761 original size:229 final size:230
Alignment explanation
Indices: 23527496--23527934 Score: 576
Period size: 229 Copynumber: 1.9 Consensus size: 230
23527486 TTCTGGCAAC
* * ** *
23527496 TAAACAATTCAATTTGCAGCACTTAAACACTTCAATTTACATCA-TTTGATCACCTGAATTTACA
1 TAAACAATTCAATTTGCAGCACTTAAACACTTCAATTCACAACACTTAAAT-ACCTCAATTTACA
* * *
23527560 GCAATTAAACACTTCAATTTACAGCATTTAAACACCTCAACTTACAACACTTTAACATCCCAATT
65 ACAATTAAACACTTCAATATACAACATTTAAACACCTCAACTTACAACACTTTAACATCCCAATT
* * * *
23527625 AACAAAATTTATACACCTCAATTACAACGAT-AAACATCTCAATTTTCAGCAAGTAAACAATTTA
130 AACAAAATTTATACACCTCAATTACAACAATAAAACATCTCAATTTCCAGCAACTAAACAATTCA
* *
23527689 ATTTGCAGTACTTAAAACACTTCAATTTACAACATT
195 AATTACAGTACTTAAAACACTTCAATTTACAACATT
* * * * **
23527725 TAAACACTTCAATTTGCTGCACTTTAACACTTCAATTCACAACACTTAAATACTTCAATTTGTAA
1 TAAACAATTCAATTTGCAGCACTTAAACACTTCAATTCACAACACTTAAATACCTCAATTTACAA
* * * * * * *
23527790 CACTTTAACACTTCAATATACAACATTTAAACACTTCAATTTACAGCACTTTAACATCTCTATTA
66 CAATTAAACACTTCAATATACAACATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTA
* ** *
23527855 ACAATATTTATACACCTCAATTACAGTAATAAAACATCTCAATTTCCAGCAACTAAACACTTCAA
131 ACAAAATTTATACACCTCAATTACAACAATAAAACATCTCAATTTCCAGCAACTAAACAATTCAA
23527920 ATTACAGTACTTAAA
196 ATTACAGTACTTAAA
23527935 TAGGGCTTTA
Statistics
Matches: 177, Mismatches: 31, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
229 130 0.73
230 47 0.27
ACGTcount: A:0.41, C:0.23, G:0.04, T:0.32
Consensus pattern (230 bp):
TAAACAATTCAATTTGCAGCACTTAAACACTTCAATTCACAACACTTAAATACCTCAATTTACAA
CAATTAAACACTTCAATATACAACATTTAAACACCTCAACTTACAACACTTTAACATCCCAATTA
ACAAAATTTATACACCTCAATTACAACAATAAAACATCTCAATTTCCAGCAACTAAACAATTCAA
ATTACAGTACTTAAAACACTTCAATTTACAACATT
Found at i:23537642 original size:20 final size:20
Alignment explanation
Indices: 23537619--23537663 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
23537609 AGAGGCATCG
23537619 AAGTGAAAACAGAGACACCA
1 AAGTGAAAACAGAGACACCA
* * *
23537639 AAGTGTAAACAGAGGCACCG
1 AAGTGAAAACAGAGACACCA
23537659 AAGTG
1 AAGTG
23537664 CAAATCCCCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.47, C:0.18, G:0.27, T:0.09
Consensus pattern (20 bp):
AAGTGAAAACAGAGACACCA
Found at i:23544687 original size:12 final size:14
Alignment explanation
Indices: 23544665--23544703 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
23544655 AGGAAAATTT
*
23544665 TAATAATAATATAAA
1 TAATAAT-ATATACA
*
23544680 TGATAATATATACA
1 TAATAATATATACA
23544694 TAATAATATA
1 TAATAATATA
23544704 CAAAAGTTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (14 bp):
TAATAATATATACA
Found at i:23546156 original size:13 final size:13
Alignment explanation
Indices: 23546133--23546166 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
23546123 ACTGGACGTT
23546133 TTTTGTTTTTTT-
1 TTTTGTTTTTTTG
*
23546145 TGTTGTTTTTTTG
1 TTTTGTTTTTTTG
23546158 TTTTGTTTT
1 TTTTGTTTT
23546167 AATTTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85
Consensus pattern (13 bp):
TTTTGTTTTTTTG
Found at i:23546486 original size:50 final size:50
Alignment explanation
Indices: 23546423--23546729 Score: 229
Period size: 50 Copynumber: 6.1 Consensus size: 50
23546413 ACTCGTAACC
** ** * *
23546423 TTAATCTGCTTAACTGTGGTGTCAAGGAAGTAAGATTCACTGTTGTAGCT
1 TTAATCTTTTTAACTGTAATGTCGAGGAAGTAAGATTCGCTGTTGTAGCT
* * * * * *
23546473 TTAATCTTTTTAACTGTAATGTCGGGGAAGCAAGATTCACCGATGTGGCT
1 TTAATCTTTTTAACTGTAATGTCGAGGAAGTAAGATTCGCTGTTGTAGCT
* ** * * * * *
23546523 TTAATCTGTTCCACTG-CATCGCCTAGGAAGTAAGATTTGTTGTTGTAGCT
1 TTAATCTTTTTAACTGTAAT-GTCGAGGAAGTAAGATTCGCTGTTGTAGCT
* * * * *
23546573 TTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCGCTGTTGTGGCT
1 TTAATCTTTTTAACTGTAATGTCGAGGAAGTAAGATTCGCTGTTGTAGCT
* ** * ** * * *
23546623 TTAATCTATTCCACTGCACCGCCTAGGAAGTAAGATTCGCTATTGTAGCT
1 TTAATCTTTTTAACTGTAATGTCGAGGAAGTAAGATTCGCTGTTGTAGCT
* * * * * * *
23546673 TCAACCTTTTTAACTGTAATGTCGGGGAAGCATGATTTGCTGTTGTGGCT
1 TTAATCTTTTTAACTGTAATGTCGAGGAAGTAAGATTCGCTGTTGTAGCT
23546723 TTAATCT
1 TTAATCT
23546730 GTTCCACTGC
Statistics
Matches: 189, Mismatches: 66, Indels: 4
0.73 0.25 0.02
Matches are distributed among these distances:
49 2 0.01
50 185 0.98
51 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.36
Consensus pattern (50 bp):
TTAATCTTTTTAACTGTAATGTCGAGGAAGTAAGATTCGCTGTTGTAGCT
Found at i:23546596 original size:100 final size:100
Alignment explanation
Indices: 23546447--23546758 Score: 489
Period size: 100 Copynumber: 3.1 Consensus size: 100
23546437 TGTGGTGTCA
* * *
23546447 AGGAAGTAAGATTCACTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCGGGGAAGCAAGATTCA
1 AGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCGGGGAAGCATGATTCG
* * *
23546512 CCGATGTGGCTTTAATCTGTTCCACTGCATCGCCT
66 CTGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
* * *
23546547 AGGAAGTAAGATTTGTTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCATGATTCG
1 AGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCGGGGAAGCATGATTCG
*
23546612 CTGTTGTGGCTTTAATCTATTCCACTGCACCGCCT
66 CTGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
* * * *
23546647 AGGAAGTAAGATTCGCTATTGTAGCTTCAACCTTTTTAACTGTAATGTCGGGGAAGCATGATTTG
1 AGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCGGGGAAGCATGATTCG
23546712 CTGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
66 CTGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
*
23546747 AGAAAGTAAGAT
1 AGGAAGTAAGAT
23546759 CTGTAATTCT
Statistics
Matches: 193, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 193 1.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (100 bp):
AGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGTAATGTCGGGGAAGCATGATTCG
CTGTTGTGGCTTTAATCTGTTCCACTGCACCGCCT
Found at i:23547136 original size:217 final size:217
Alignment explanation
Indices: 23546753--23547324 Score: 957
Period size: 217 Copynumber: 2.6 Consensus size: 217
23546743 GCCTAGAAAG
*
23546753 TAAGATCTGTAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGTGATCTA
1 TAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGTGATCTA
*
23546818 CTCTACTGTAACTTCAGAA-AGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTTAGGGA
66 CTCTACTGTAATTTCA-AAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTTAGGGA
*
23546882 AATAGGATTACTAGCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATTCCAATTTCGATT
130 AATAGGATTACTAGCTTCAATCTGCTCCACAGTAATCTCAGGGAGATAAGATTCCAATTTCGATT
*
23546947 AGCTTCACTACTGCTTAGGGAGA
195 AGCTCCACTACTGCTTAGGGAGA
* * *
23546970 TAAGATCTAAAATTCTTCGGTCTATTCCACTATAATCTCAGGGAGATAAGACCTGATGCGATCTA
1 TAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGTGATCTA
*
23547035 CTCTACTGTAATTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTTCACTGTAATCTTAGGGAA
66 CTCTACTGTAATTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTTAGGGAA
* *
23547100 ATAGGATTACTAGCTTCAATCTGCTCCGCAGTAATCTCAGGGAGATAAGATTCCATTTTCGATTA
131 ATAGGATTACTAGCTTCAATCTGCTCCACAGTAATCTCAGGGAGATAAGATTCCAATTTCGATTA
23547165 GCTCCACTACTGCTTAGGGAGA
196 GCTCCACTACTGCTTAGGGAGA
* *
23547187 TAAGGTCTGAAATTCATCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGTGATCTA
1 TAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGTGATCTA
** * * * *
23547252 CTCTACTGTAATCCCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTCAGGGAG
66 CTCTACTGTAATTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTTAGGGAA
*
23547317 ATAAGATT
131 ATAGGATT
23547325 CCATTTTCGA
Statistics
Matches: 331, Mismatches: 23, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
216 2 0.01
217 329 0.99
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.32
Consensus pattern (217 bp):
TAAGATCTGAAATTCTTCGGTCTATTCCACTGTAATCTCAGGGAGATAAGACCTGATGTGATCTA
CTCTACTGTAATTTCAAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTTAGGGAA
ATAGGATTACTAGCTTCAATCTGCTCCACAGTAATCTCAGGGAGATAAGATTCCAATTTCGATTA
GCTCCACTACTGCTTAGGGAGA
Found at i:23547227 original size:88 final size:88
Alignment explanation
Indices: 23547130--23547388 Score: 257
Period size: 85 Copynumber: 3.0 Consensus size: 88
23547120 CTGCTCCGCA
*
23547130 GTAATCTCAGGGAGATAAGATTCCATTTTCGATTAGCTCCACTACTGCTTAGGGAGATAAGGTCT
1 GTAATCTCAGGGAGATAAGATTCCATTTTCGATTAGCTCCACTACTGCTTAGGGAGATAAGATCT
*
23547195 GAAATTCATCGGTCTATTCCACT
66 GAAATTCATCAGTCTATTCCACT
* * * ** *
23547218 GTAATCTCAGGGAGATAAGA--CC-TGATGT-GATCTA-CTCTACTGTAAT-CCCAGAGAGATAA
1 GTAATCTCAGGGAGATAAGATTCCAT--TTTCGAT-TAGCTCCAC--TACTGCTTAGGGAGATAA
** * * **
23547277 GATCCT-TTATT--TTAATCTGCTCCACT
61 GAT-CTGAAATTCATCAGTCTATTCCACT
23547303 GTAATCTCAGGGAGATAAGATTCCATTTTCGATTAGCTCCACTACTGCTTAGGGAGATAAGATCT
1 GTAATCTCAGGGAGATAAGATTCCATTTTCGATTAGCTCCACTACTGCTTAGGGAGATAAGATCT
* *
23547368 GAAATTCTTCAATCTATTCCA
66 GAAATTCATCAGTCTATTCCA
23547389 TTGCTGATCA
Statistics
Matches: 131, Mismatches: 25, Indels: 30
0.70 0.13 0.16
Matches are distributed among these distances:
85 36 0.27
86 30 0.23
87 29 0.22
88 36 0.27
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (88 bp):
GTAATCTCAGGGAGATAAGATTCCATTTTCGATTAGCTCCACTACTGCTTAGGGAGATAAGATCT
GAAATTCATCAGTCTATTCCACT
Found at i:23547308 original size:44 final size:42
Alignment explanation
Indices: 23547207--23547323 Score: 137
Period size: 44 Copynumber: 2.8 Consensus size: 42
23547197 AATTCATCGG
* *
23547207 TCTATTCCACTGTAATCTCAGGGAGATAAGA-CCTGATGTGA
1 TCTACTCCACTGTAATCTCAGGGAGATAAGATCCTGATGTAA
* * * * *
23547248 TCTACTCTACTGTAATCCCAGAGAGATAAGATCCTTTATTTTAA
1 TCTACTCCACTGTAATCTCAGGGAGATAAGATCC-TGA-TGTAA
*
23547292 TCTGCTCCACTGTAATCTCAGGGAGATAAGAT
1 TCTACTCCACTGTAATCTCAGGGAGATAAGAT
23547324 TCCATTTTCG
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
41 27 0.44
42 2 0.03
43 2 0.03
44 31 0.50
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (42 bp):
TCTACTCCACTGTAATCTCAGGGAGATAAGATCCTGATGTAA
Found at i:23547483 original size:129 final size:129
Alignment explanation
Indices: 23547330--23547765 Score: 646
Period size: 129 Copynumber: 3.4 Consensus size: 129
23547320 AGATTCCATT
* * * *
23547330 TTCGAT-TAGCTCCACTACTGCTTAGGGAGATAAGATCTGAAA-TTCTTCAATCTATTCCATTGC
1 TTCGATCT-GCTCCACTACTGCTTAGGGAGACAAGATCTGAAATTTC-CCAACCTATTCCACTGC
*
23547393 TGATCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTTGCCGT
64 TGATCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGT
23547458 C
129 C
*
23547459 TTCGATCTGCTCCACTATTGCTTAGGGAGACAAGATCT-ATAATTTCCCAACCTATTCCACTGCT
1 TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGA-AATTTCCCAACCTATTCCACTGCT
* * *
23547523 GATCAGGGATATAGAACTTGTGGCTTAAATCTGCTTCCTTACACTTAAAGATAAGAGTCGCCGTC
65 GATCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTC
* ** * *
23547588 TTCGATTTGCTCCGTTATTGCTTAGGGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTG
1 TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATTTCCCAACCTATTCCACTGCTG
* * *
23547653 ATCAGGGATATATGACTTGTGGCTTAAATTTGCTTTCTTACACTTGAAGATAAGATTCGCCGTC
66 ATCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTC
*
23547717 TTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCT-ATAATTTCCCA
1 TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGA-AATTTCCCA
23547766 GATCTGTTCT
Statistics
Matches: 279, Mismatches: 23, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
128 1 0.00
129 274 0.98
130 4 0.01
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (129 bp):
TTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGAAATTTCCCAACCTATTCCACTGCTG
ATCAGGGATATAGGACTTGTGGCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTC
Found at i:23549003 original size:8 final size:8
Alignment explanation
Indices: 23548992--23549050 Score: 54
Period size: 8 Copynumber: 7.6 Consensus size: 8
23548982 CCATTTTTAC
23548992 TTTTTCA-
1 TTTTTCAT
23548999 TTTTTCAT
1 TTTTTCAT
23549007 TTTTTCA-
1 TTTTTCAT
23549014 TTTTTCA-
1 TTTTTCAT
23549021 -TTTTCAT
1 TTTTTCAT
*
23549028 TTTTCATAAT
1 TTTT--TCAT
*
23549038 TTTTTCCT
1 TTTTTCAT
23549046 TTTTT
1 TTTTT
23549051 TGACTAAAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
6 6 0.14
7 14 0.32
8 17 0.39
10 7 0.16
ACGTcount: A:0.14, C:0.14, G:0.00, T:0.73
Consensus pattern (8 bp):
TTTTTCAT
Found at i:23549010 original size:15 final size:15
Alignment explanation
Indices: 23548983--23549034 Score: 74
Period size: 15 Copynumber: 3.7 Consensus size: 15
23548973 TCAGCCTCTC
*
23548983 CATTTTT-ACTTTTT
1 CATTTTTCATTTTTT
23548997 CATTTTTCATTTTTT
1 CATTTTTCATTTTTT
23549012 CATTTTTCA--TTTT
1 CATTTTTCATTTTTT
23549025 CATTTTTCAT
1 CATTTTTCAT
23549035 AATTTTTTCC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
13 13 0.37
14 7 0.20
15 15 0.43
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (15 bp):
CATTTTTCATTTTTT
Found at i:23549049 original size:7 final size:7
Alignment explanation
Indices: 23548983--23549034 Score: 72
Period size: 7 Copynumber: 7.4 Consensus size: 7
23548973 TCAGCCTCTC
23548983 CATTTTT
1 CATTTTT
23548990 -ACTTTTT
1 CA-TTTTT
23548997 CATTTTT
1 CATTTTT
23549004 CATTTTTT
1 CA-TTTTT
23549012 CATTTTT
1 CATTTTT
23549019 CA-TTTT
1 CATTTTT
23549025 CATTTTT
1 CATTTTT
23549032 CAT
1 CAT
23549035 AATTTTTTCC
Statistics
Matches: 41, Mismatches: 0, Indels: 8
0.84 0.00 0.16
Matches are distributed among these distances:
6 7 0.17
7 26 0.63
8 8 0.20
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:23549913 original size:6 final size:6
Alignment explanation
Indices: 23549904--23549964 Score: 50
Period size: 6 Copynumber: 9.7 Consensus size: 6
23549894 TGGCCTTTCC
* * * *
23549904 TTTTTA TTTTTC TTTTTA TTTTTTA TTTTCA TTTTTTGA TTTTGA TTTTGA
1 TTTTTA TTTTTA TTTTTA -TTTTTA TTTTTA -TTTTT-A TTTTTA TTTTTA
*
23549955 TTTTGA TTTT
1 TTTTTA TTTT
23549965 GATTGATTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
6 32 0.68
7 14 0.30
8 1 0.02
ACGTcount: A:0.13, C:0.03, G:0.07, T:0.77
Consensus pattern (6 bp):
TTTTTA
Found at i:23549939 original size:14 final size:14
Alignment explanation
Indices: 23549916--23549974 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 14
23549906 TTTATTTTTC
*
23549916 TTTTTATTTTTT-A
1 TTTTCATTTTTTGA
23549929 TTTTCATTTTTTGA
1 TTTTCATTTTTTGA
*
23549943 TTTTGA--TTTTGA
1 TTTTCATTTTTTGA
*
23549955 TTTTGATTTTGATTGA
1 TTTTCATTTT--TTGA
23549971 TTTT
1 TTTT
23549975 TTTCTTTTTC
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
12 12 0.31
13 11 0.28
14 8 0.21
16 8 0.21
ACGTcount: A:0.15, C:0.02, G:0.10, T:0.73
Consensus pattern (14 bp):
TTTTCATTTTTTGA
Found at i:23549940 original size:13 final size:13
Alignment explanation
Indices: 23549910--23549952 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
23549900 TTCCTTTTTA
* *
23549910 TTTTTCTTTTTAT
1 TTTTTATTTTCAT
23549923 TTTTTATTTTCAT
1 TTTTTATTTTCAT
*
23549936 TTTTTGATTTTGAT
1 TTTTT-ATTTTCAT
23549950 TTT
1 TTT
23549953 GATTTTGATT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
13 16 0.62
14 10 0.38
ACGTcount: A:0.12, C:0.05, G:0.05, T:0.79
Consensus pattern (13 bp):
TTTTTATTTTCAT
Found at i:23549965 original size:6 final size:6
Alignment explanation
Indices: 23549937--23549968 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
23549927 TATTTTCATT
23549937 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TT
23549969 GATTTTTTTC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.16, C:0.00, G:0.16, T:0.69
Consensus pattern (6 bp):
TTTTGA
Found at i:23549976 original size:18 final size:17
Alignment explanation
Indices: 23549934--23549976 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 17
23549924 TTTTATTTTC
23549934 ATTTTTTGATTTTGATT
1 ATTTTTTGATTTTGATT
23549951 -TTGATTTTGATTTTGATT
1 ATT--TTTTGATTTTGATT
23549969 GATTTTTT
1 -ATTTTTT
23549977 TCTTTTTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 7
0.76 0.00 0.24
Matches are distributed among these distances:
16 2 0.09
18 18 0.82
20 2 0.09
ACGTcount: A:0.16, C:0.00, G:0.14, T:0.70
Consensus pattern (17 bp):
ATTTTTTGATTTTGATT
Found at i:23554782 original size:27 final size:27
Alignment explanation
Indices: 23554752--23554803 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
23554742 AAAAGTGAGG
23554752 AAAAAGAAAAAGAGAATGAAAAAGAGC
1 AAAAAGAAAAAGAGAATGAAAAAGAGC
* ** *
23554779 AAAAAGAGATTGAGAGTGAAAAAGA
1 AAAAAGAAAAAGAGAATGAAAAAGA
23554804 AATTGAAGAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.65, C:0.02, G:0.25, T:0.08
Consensus pattern (27 bp):
AAAAAGAAAAAGAGAATGAAAAAGAGC
Found at i:23557914 original size:12 final size:14
Alignment explanation
Indices: 23557892--23557930 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
23557882 AGGAAAATTT
*
23557892 TAATAATAATATAAA
1 TAATAAT-ATATACA
*
23557907 TGATAATATATACA
1 TAATAATATATACA
23557921 TAATAATATA
1 TAATAATATA
23557931 CAAAAGTTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 15 0.71
15 6 0.29
ACGTcount: A:0.59, C:0.03, G:0.03, T:0.36
Consensus pattern (14 bp):
TAATAATATATACA
Found at i:23559562 original size:8 final size:8
Alignment explanation
Indices: 23559544--23559581 Score: 53
Period size: 8 Copynumber: 5.0 Consensus size: 8
23559534 TAAGCTGGAC
23559544 GTTTT-TT
1 GTTTTGTT
23559551 GTTTTGTT
1 GTTTTGTT
23559559 GTTTTGTT
1 GTTTTGTT
*
23559567 GTTTTATT
1 GTTTTGTT
23559575 -TTTTGTT
1 GTTTTGTT
23559582 TTAATTTGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
7 11 0.39
8 17 0.61
ACGTcount: A:0.03, C:0.00, G:0.18, T:0.79
Consensus pattern (8 bp):
GTTTTGTT
Found at i:23563515 original size:19 final size:20
Alignment explanation
Indices: 23563490--23563528 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23563480 TTTTCAAATT
23563490 TATATATTTTATAAAAAATGA
1 TATAT-TTTTATAAAAAATGA
*
23563511 TATATTTTTATTAAAAAT
1 TATATTTTTATAAAAAAT
23563529 ATTACATGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (20 bp):
TATATTTTTATAAAAAATGA
Found at i:23563826 original size:10 final size:9
Alignment explanation
Indices: 23563796--23563854 Score: 66
Period size: 9 Copynumber: 6.4 Consensus size: 9
23563786 TTTGCATCCT
23563796 TCTCTCAAC
1 TCTCTCAAC
*
23563805 TCTCT-AAT
1 TCTCTCAAC
23563813 TCTCTCAAAC
1 TCTCTC-AAC
23563823 TCTCTCAAAC
1 TCTCTC-AAC
* *
23563833 CCTCTCAAG
1 TCTCTCAAC
23563842 TCTCTCAAC
1 TCTCTCAAC
23563851 TCTC
1 TCTC
23563855 GTTTTAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
8 7 0.17
9 18 0.43
10 17 0.40
ACGTcount: A:0.24, C:0.41, G:0.02, T:0.34
Consensus pattern (9 bp):
TCTCTCAAC
Found at i:23564066 original size:18 final size:17
Alignment explanation
Indices: 23564039--23564073 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
23564029 AATAATGTTA
23564039 AATTTAATTTTTTTTAT
1 AATTTAATTTTTTTTAT
23564056 AATTATAATTTTTTTTAT
1 AATT-TAATTTTTTTTAT
23564074 TGTGTCAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
AATTTAATTTTTTTTAT
Found at i:23568477 original size:81 final size:81
Alignment explanation
Indices: 23568373--23568539 Score: 253
Period size: 81 Copynumber: 2.1 Consensus size: 81
23568363 ATCAATAATG
* *
23568373 CCTTGGAAAAATGGTATCTACTTTATTGCACAGAAGAGTTCTAAAATGGCCTACCTCTAATGAAA
1 CCTTGGAAAAATGGTAACTACTTTATTGCACAAAAGAGTTCTAAAATGGCCTACCTCTAATGAAA
*
23568438 GCAAAACTGCAAGTTA
66 GCAAAACCGCAAGTTA
* * * ** *
23568454 CCTTGGCAAAATGGTAACTACTTTATTGTACAAAAGAGTTCTAAAATGGCCTACCTTTCGTGAGA
1 CCTTGGAAAAATGGTAACTACTTTATTGCACAAAAGAGTTCTAAAATGGCCTACCTCTAATGAAA
23568519 GCAAAACCGCAAGTTA
66 GCAAAACCGCAAGTTA
23568535 CCTTG
1 CCTTG
23568540 CCTGTTTCTA
Statistics
Matches: 77, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
81 77 1.00
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.28
Consensus pattern (81 bp):
CCTTGGAAAAATGGTAACTACTTTATTGCACAAAAGAGTTCTAAAATGGCCTACCTCTAATGAAA
GCAAAACCGCAAGTTA
Found at i:23573883 original size:9 final size:8
Alignment explanation
Indices: 23573863--23573897 Score: 52
Period size: 9 Copynumber: 4.1 Consensus size: 8
23573853 TATCTAATTC
23573863 TCTTTTTT
1 TCTTTTTT
23573871 TCTTTTCTT
1 TCTTTT-TT
23573880 TCTTTTTT
1 TCTTTTTT
23573888 TCCTTTTTT
1 T-CTTTTTT
23573897 T
1 T
23573898 AATGGAAACC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 9 0.36
9 16 0.64
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (8 bp):
TCTTTTTT
Found at i:23574694 original size:5 final size:6
Alignment explanation
Indices: 23574679--23574709 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
23574669 TACATGAGAG
*
23574679 AAAAAC AAAAAC AAAAAC AAAAAT AAAAAC A
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC A
23574710 TAACTTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.84, C:0.13, G:0.00, T:0.03
Consensus pattern (6 bp):
AAAAAC
Found at i:23580287 original size:16 final size:16
Alignment explanation
Indices: 23580266--23580296 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23580256 GCGCCTAGAT
*
23580266 TACATAATGTTTTCCC
1 TACATAATGATTTCCC
23580282 TACATAATGATTTCC
1 TACATAATGATTTCC
23580297 AATTATATAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.23, G:0.06, T:0.42
Consensus pattern (16 bp):
TACATAATGATTTCCC
Found at i:23585983 original size:23 final size:23
Alignment explanation
Indices: 23585957--23586000 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
23585947 AAAAAATCTT
*
23585957 AAATCAAAATCCTAACCCTAATA
1 AAATAAAAATCCTAACCCTAATA
23585980 AAATAAAAATCCTAACCCTAA
1 AAATAAAAATCCTAACCCTAA
23586001 GAAGAGATCT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.55, C:0.25, G:0.00, T:0.20
Consensus pattern (23 bp):
AAATAAAAATCCTAACCCTAATA
Found at i:23592535 original size:10 final size:10
Alignment explanation
Indices: 23592520--23592544 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
23592510 TGAAAATATA
23592520 TAAAATAAAT
1 TAAAATAAAT
23592530 TAAAATAAAT
1 TAAAATAAAT
23592540 TAAAA
1 TAAAA
23592545 AATAAACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
TAAAATAAAT
Found at i:23597091 original size:51 final size:51
Alignment explanation
Indices: 23597036--23597229 Score: 175
Period size: 51 Copynumber: 3.8 Consensus size: 51
23597026 ATGTAAAAGT
* * *
23597036 GAAAGTGAT-GGTCACGTGTCTAGTACTATGTGTAGGCTACTACGTGTACTA
1 GAAAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-TA
* * *
23597087 GAAA--GATAGGTCATATGTGTAGTACTATGTGCAGGCTACTATGCGTATCA
1 GAAAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTAT-A
** * * * * *
23597137 GATACCT--TCGATCACGTGTGTAGTACTATGTGCAGGCTACTACTTGTATTG
1 GA-AAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTA-TA
* *
23597188 GATAGTGAT-GGTCACATGTGTAGTACTATGTGTAGGCTACTA
1 GAAAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTA
23597230 TGTGAACCGG
Statistics
Matches: 114, Mismatches: 21, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
49 4 0.04
50 37 0.32
51 71 0.62
52 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (51 bp):
GAAAGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTATA
Found at i:23597307 original size:46 final size:43
Alignment explanation
Indices: 23597235--23597319 Score: 116
Period size: 46 Copynumber: 1.9 Consensus size: 43
23597225 TACTATGTGA
*
23597235 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTGATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGATCCC
* *
23597278 ACCGGATATCATTGATTACAAAGGGTGGTTGCTGTGTGCTGA
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATGTGCTGA
23597320 ATCCACAGTG
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
43 5 0.14
44 11 0.31
45 2 0.06
46 18 0.50
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGATCCC
Found at i:23597505 original size:37 final size:38
Alignment explanation
Indices: 23597434--23597506 Score: 94
Period size: 37 Copynumber: 1.9 Consensus size: 38
23597424 ATGTGCAGAA
* *
23597434 TTGAATTGAATAATGACTTCAAAATGACAAAGTGAATT
1 TTGAATTAAATAATGACTTCAAAATGAAAAAGTGAATT
* * *
23597472 TTGAATTAAATAGTGA-TTGAAAGTGAAAAAGTGAA
1 TTGAATTAAATAATGACTTCAAAATGAAAAAGTGAA
23597507 ATTATGAAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
37 16 0.53
38 14 0.47
ACGTcount: A:0.47, C:0.04, G:0.19, T:0.30
Consensus pattern (38 bp):
TTGAATTAAATAATGACTTCAAAATGAAAAAGTGAATT
Found at i:23599179 original size:24 final size:25
Alignment explanation
Indices: 23599152--23599218 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 25
23599142 ATTGTTGTTT
23599152 TATCTATTTAAAAA-AAGAGCCATA
1 TATCTATTTAAAAAGAAGAGCCATA
* *
23599176 TATC-ATTATTAAAAAGAGGAGTCATA
1 TATCTA-T-TTAAAAAGAAGAGCCATA
* *
23599202 TATATATTTTAAAAGAA
1 TATCTATTTAAAAAGAA
23599219 TTCAGATATG
Statistics
Matches: 34, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
23 1 0.03
24 5 0.15
25 15 0.44
26 12 0.35
27 1 0.03
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.33
Consensus pattern (25 bp):
TATCTATTTAAAAAGAAGAGCCATA
Found at i:23605025 original size:24 final size:24
Alignment explanation
Indices: 23604999--23605043 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
23604989 ATAATTCATT
* *
23604999 TTTTATTTCATTAA-TAAATTGGG
1 TTTTAATTAATTAAGTAAATTGGG
23605022 TTTTAATTAATTAAGTAAATTG
1 TTTTAATTAATTAAGTAAATTG
23605044 ATTAATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.36, C:0.02, G:0.11, T:0.51
Consensus pattern (24 bp):
TTTTAATTAATTAAGTAAATTGGG
Found at i:23605481 original size:19 final size:19
Alignment explanation
Indices: 23605459--23605496 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
23605449 TCAATCATTC
23605459 CTCATCCCATCA-TCTCTCA
1 CTCAT-CCATCATTCTCTCA
*
23605478 CTCATTCATCATTCTCTCA
1 CTCATCCATCATTCTCTCA
23605497 ACTCTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.21, C:0.42, G:0.00, T:0.37
Consensus pattern (19 bp):
CTCATCCATCATTCTCTCA
Found at i:23615779 original size:23 final size:24
Alignment explanation
Indices: 23615753--23615797 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
23615743 ATAGTTCATT
* *
23615753 TTTTATTTCATTAA-TAAATTGGG
1 TTTTAATTAATTAAGTAAATTGGG
23615776 TTTTAATTAATTAAGTAAATTG
1 TTTTAATTAATTAAGTAAATTG
23615798 ATTAATTAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.36, C:0.02, G:0.11, T:0.51
Consensus pattern (24 bp):
TTTTAATTAATTAAGTAAATTGGG
Done.