Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 80 of 170
Found at i:24222953 original size:51 final size:51
Alignment explanation
Indices: 24222867--24223054 Score: 193
Period size: 51 Copynumber: 3.7 Consensus size: 51
24222857 TGCCTATAAA
* * *
24222867 CACGTATGTAGTACTAAGTGCAGGCTACTACGTGTATC-GATAGATAATGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-AGATAATGGT
* * * * **
24222918 AACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAAGGTTTTGGT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAGATAATGGT
* * * * *
24222969 CGCGTGTGTAGTACTATGTGCAAGCTACTACGTGAACCGGAA-AGT-TTGAT
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAGA-TAATGGT
* *
24223019 CACGTGTGTAGTACTATGTGAAGGCTACTATGTGTA
1 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
24223055 TCGAATGATA
Statistics
Matches: 113, Mismatches: 22, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
50 35 0.31
51 76 0.67
52 2 0.02
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (51 bp):
CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAAGATAATGGT
Found at i:24227059 original size:40 final size:40
Alignment explanation
Indices: 24227022--24227246 Score: 287
Period size: 40 Copynumber: 5.7 Consensus size: 40
24227012 GCTACTCGTT
* *
24227022 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
24227062 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
24227102 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** *
24227142 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
24227182 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
*
24227222 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
24227247 CATCATTCAA
Statistics
Matches: 171, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 19 0.11
40 150 0.88
41 2 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:24235036 original size:40 final size:40
Alignment explanation
Indices: 24234999--24235223 Score: 289
Period size: 40 Copynumber: 5.7 Consensus size: 40
24234989 GCTACTCGTT
* *
24234999 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
24235039 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
24235079 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
24235119 CAAATGCCTTC-GGATCTTAGCCCGGA-TTAGTAACTCGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAACTCGCA
** * * * *
24235158 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
24235199 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
24235224 CATCATTCAA
Statistics
Matches: 171, Mismatches: 9, Indels: 10
0.90 0.05 0.05
Matches are distributed among these distances:
39 41 0.24
40 117 0.68
41 13 0.08
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:24240655 original size:50 final size:50
Alignment explanation
Indices: 24240590--24240829 Score: 275
Period size: 50 Copynumber: 4.7 Consensus size: 50
24240580 TTTGTACTAT
* * * ** *
24240590 CAATGCCATATCCCAGATATGGTCTTACATGAGAGTTCTCATATTGGTGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGC
* *
24240640 CCATGCCATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTCGGTGC
1 CAATGCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTTGGTGC
* *
24240690 CAACGTCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGC
* *
24240740 CAATGCCATGTCCCAGACATGGTCTTAAATGGGACCTCTCATAATCTTAATGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATC-T--TGGTGC
** *
24240796 CAATGCCATGTCCCAGGTATGGTCTTATATGGGA
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGA
24240830 TCTTATTCCC
Statistics
Matches: 163, Mismatches: 19, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
49 1 0.01
50 121 0.74
51 1 0.01
53 3 0.02
54 1 0.01
56 36 0.22
ACGTcount: A:0.23, C:0.27, G:0.22, T:0.28
Consensus pattern (50 bp):
CAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGC
Found at i:24244880 original size:50 final size:50
Alignment explanation
Indices: 24244800--24244924 Score: 160
Period size: 50 Copynumber: 2.5 Consensus size: 50
24244790 TGAGGTTATG
* * * *
24244800 GAGGTCCCACGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGA
1 GAGGTCCCACATAAGACCATGTCTGAGACATGGCATGGGCACCGAGATGA
* *
24244850 GAGGTCCCCCATAAGACCATGTCTGAGACATGGCATGGGCACCGATATGA
1 GAGGTCCCACATAAGACCATGTCTGAGACATGGCATGGGCACCGAGATGA
* ** *
24244900 GAGCTCCCATGTAAGACCATATCTG
1 GAGGTCCCACATAAGACCATGTCTG
24244925 GGATATGACA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 64 1.00
ACGTcount: A:0.26, C:0.26, G:0.29, T:0.19
Consensus pattern (50 bp):
GAGGTCCCACATAAGACCATGTCTGAGACATGGCATGGGCACCGAGATGA
Found at i:24245544 original size:10 final size:10
Alignment explanation
Indices: 24245529--24245588 Score: 54
Period size: 9 Copynumber: 6.0 Consensus size: 10
24245519 GGTGATAACA
24245529 TATATATATT
1 TATATATATT
24245539 TATATATTATT
1 TATATA-TATT
*
24245550 AATAT-TATT
1 TATATATATT
*
24245559 TATAAATA-T
1 TATATATATT
24245568 TATA-ATAATT
1 TATATAT-ATT
24245578 TATATTATATT
1 TATA-TATATT
24245589 ATTATGATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
8 2 0.05
9 13 0.32
10 13 0.32
11 11 0.27
12 2 0.05
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (10 bp):
TATATATATT
Found at i:24245578 original size:19 final size:21
Alignment explanation
Indices: 24245532--24245592 Score: 67
Period size: 20 Copynumber: 3.0 Consensus size: 21
24245522 GATAACATAT
24245532 ATATATTTAT--ATATTATTA
1 ATATATTTATAAATATTATTA
24245551 ATATTATTTATAAATATTA-TA
1 ATA-TATTTATAAATATTATTA
*
24245572 ATA-ATTTATATTATATTATTA
1 ATATATTTATA-AATATTATTA
24245593 TGATATAATA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
19 10 0.28
20 13 0.36
21 7 0.19
22 6 0.17
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (21 bp):
ATATATTTATAAATATTATTA
Found at i:24247203 original size:51 final size:51
Alignment explanation
Indices: 24247145--24247339 Score: 270
Period size: 51 Copynumber: 3.8 Consensus size: 51
24247135 GATACCAGTT
* *
24247145 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGGTA
* *
24247196 CACATAGTAGCCTGCACATAGTACTACACACGTGATCA-AAGCTATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCA-CTATCCGGTA
* * * *
24247247 CGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACC-ATCACTATCCGGTA
*
24247297 CACGTAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
24247340 TTCAATTTCA
Statistics
Matches: 126, Mismatches: 14, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
49 4 0.03
50 41 0.33
51 79 0.63
52 1 0.01
53 1 0.01
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.23
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGGTA
Found at i:24247325 original size:101 final size:102
Alignment explanation
Indices: 24247147--24247331 Score: 311
Period size: 101 Copynumber: 1.8 Consensus size: 102
24247137 TACCAGTTCA
*
24247147 CATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACATAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACATAGTAGCCTGCA
24247212 CATAGTACTACACACGTGATCAAAGCTATCCGGTACG
66 CATAGTACTACACACGTGATCAAAGCTATCCGGTACG
* * *
24247249 CATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTAGCCTGC
1 CATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACATAGTAGCCTGC
24247312 ACATAGTACTACACACGTGA
65 ACATAGTACTACACACGTGA
24247332 CCATCACTTT
Statistics
Matches: 78, Mismatches: 4, Indels: 3
0.92 0.05 0.04
Matches are distributed among these distances:
101 39 0.50
102 35 0.45
103 4 0.05
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.23
Consensus pattern (102 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACATAGTAGCCTGCA
CATAGTACTACACACGTGATCAAAGCTATCCGGTACG
Found at i:24247354 original size:101 final size:102
Alignment explanation
Indices: 24247141--24247365 Score: 285
Period size: 101 Copynumber: 2.2 Consensus size: 102
24247131 TAATGATACC
*
24247141 AGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATCCGATACACATAGTAG
1 AGTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACATAGTAG
* *
24247206 CCTGCACATAGTACTACACACGTGATCAAAGCTATCC
66 CCTGCACATAGTACTACACACGTGACCAAAGCTATCA
* * * * * *
24247243 GGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATCA-T-TCTGGTACACGTAGTA
1 AGTTCACATAGTAGCCTGCACATAGTACTACACATGCGACC-ATCACTATCCGATACACATAGTA
* *
24247306 GCCTGCACATAGTACTACACACGTGACCATCA-CTTTCA
65 GCCTGCACATAGTACTACACACGTGACCA-AAGCTATCA
* * *
24247344 ATTTCACATAGTGGCCTACACA
1 AGTTCACATAGTAGCCTGCACA
24247366 CAGTCCATGC
Statistics
Matches: 104, Mismatches: 17, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
101 61 0.59
102 39 0.38
103 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.16, T:0.24
Consensus pattern (102 bp):
AGTTCACATAGTAGCCTGCACATAGTACTACACATGCGACCATCACTATCCGATACACATAGTAG
CCTGCACATAGTACTACACACGTGACCAAAGCTATCA
Found at i:24248638 original size:98 final size:98
Alignment explanation
Indices: 24248531--24248726 Score: 392
Period size: 98 Copynumber: 2.0 Consensus size: 98
24248521 GACTACTATC
24248531 CGACCCATGCTAGAATTTTTTATTTAGATGAATATTTTGAGTTATGCCATTGATGAACAATTGTG
1 CGACCCATGCTAGAATTTTTTATTTAGATGAATATTTTGAGTTATGCCATTGATGAACAATTGTG
24248596 TTTTGTGATGTTTGATGATGAATTATGAAATAT
66 TTTTGTGATGTTTGATGATGAATTATGAAATAT
24248629 CGACCCATGCTAGAATTTTTTATTTAGATGAATATTTTGAGTTATGCCATTGATGAACAATTGTG
1 CGACCCATGCTAGAATTTTTTATTTAGATGAATATTTTGAGTTATGCCATTGATGAACAATTGTG
24248694 TTTTGTGATGTTTGATGATGAATTATGAAATAT
66 TTTTGTGATGTTTGATGATGAATTATGAAATAT
24248727 ATATTTTTGA
Statistics
Matches: 98, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 98 1.00
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.43
Consensus pattern (98 bp):
CGACCCATGCTAGAATTTTTTATTTAGATGAATATTTTGAGTTATGCCATTGATGAACAATTGTG
TTTTGTGATGTTTGATGATGAATTATGAAATAT
Found at i:24263699 original size:27 final size:27
Alignment explanation
Indices: 24263678--24263736 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
24263668 AAATATCCTC
*
24263678 ATAGGGTAGAATGACCAAAATACCCCT
1 ATAGGGTAAAATGACCAAAATACCCCT
**
24263705 ATAGGGTAAAATGACTGAAATACCCCT
1 ATAGGGTAAAATGACCAAAATACCCCT
24263732 ATAGG
1 ATAGG
24263737 AGATGAAATG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.41, C:0.19, G:0.20, T:0.20
Consensus pattern (27 bp):
ATAGGGTAAAATGACCAAAATACCCCT
Found at i:24273489 original size:39 final size:38
Alignment explanation
Indices: 24273419--24273501 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 38
24273409 CTCTCACAAC
** *
24273419 CTCTTTTTCTTTTTCAATTTTTTTCTTTTTTCTCTCACG
1 CTCTTTTTCTTTTTCAATTAATTTC-TTTTTCTATCACG
24273458 CTCTTTTTCTTTTTCAAGTTCAATTTC-TTTTCTATCACG
1 CTCTTTTTCTTTTTCAA-TT-AATTTCTTTTTCTATCACG
24273497 CTCTT
1 CTCTT
24273502 CTTTTTAGAT
Statistics
Matches: 39, Mismatches: 3, Indels: 4
0.85 0.07 0.09
Matches are distributed among these distances:
39 33 0.85
40 2 0.05
41 4 0.10
ACGTcount: A:0.11, C:0.24, G:0.04, T:0.61
Consensus pattern (38 bp):
CTCTTTTTCTTTTTCAATTAATTTCTTTTTCTATCACG
Found at i:24284063 original size:21 final size:21
Alignment explanation
Indices: 24284037--24284079 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
24284027 GCCACATGAA
**
24284037 GCCATAATGATGTTCACACAT
1 GCCATAAACATGTTCACACAT
24284058 GCCATAAACATGTTCACACAT
1 GCCATAAACATGTTCACACAT
24284079 G
1 G
24284080 GAATTAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.26
Consensus pattern (21 bp):
GCCATAAACATGTTCACACAT
Found at i:24285645 original size:19 final size:19
Alignment explanation
Indices: 24285621--24285657 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
24285611 GCAGATCATT
24285621 AAACAAAGATGCATTTAAA
1 AAACAAAGATGCATTTAAA
24285640 AAACAAAGATGCATTTAA
1 AAACAAAGATGCATTTAA
24285658 CAAATAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.57, C:0.11, G:0.11, T:0.22
Consensus pattern (19 bp):
AAACAAAGATGCATTTAAA
Found at i:24291893 original size:82 final size:81
Alignment explanation
Indices: 24291777--24291932 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
24291767 AAATTGTACA
* * * *
24291777 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
24291841 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24291858 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
24291923 TGCGAGTTGA
65 TGCGAATTGA
24291933 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24291900 original size:55 final size:52
Alignment explanation
Indices: 24291776--24291929 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
24291766 TAAATTGTAC
* *
24291776 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
24291829 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
24291884 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
24291930 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:24291934 original size:27 final size:27
Alignment explanation
Indices: 24291777--24291932 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
24291767 AAATTGTACA
*
24291777 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
24291804 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
24291831 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
24291858 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
24291886 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
24291913 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
24291933 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:24291943 original size:27 final size:27
Alignment explanation
Indices: 24291769--24291953 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
24291759 GCGGGATTAA
*
24291769 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
24291796 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
24291823 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
24291850 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
24291878 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
24291905 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
24291932 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
24291954 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:24291944 original size:82 final size:81
Alignment explanation
Indices: 24291769--24291953 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
24291759 GCGGGATTAA
* * * *
24291769 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
24291834 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
24291850 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
24291914 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
24291932 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
24291954 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:24299971 original size:82 final size:81
Alignment explanation
Indices: 24299855--24300010 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
24299845 AAATTGTACA
* * * *
24299855 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTAAGTG
1 GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTAAGTG
24299919 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
24299936 GCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTG
1 GCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTG
*
24300001 TGCGAGTTGA
65 TGCGAATTGA
24300011 TTGTATAGCA
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:24299978 original size:55 final size:52
Alignment explanation
Indices: 24299854--24300007 Score: 175
Period size: 55 Copynumber: 2.9 Consensus size: 52
24299844 TAAATTGTAC
* *
24299854 AGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG
1 AGCACTAAGTGTGCGAATT-GACTATGTGGCACTAAGTGTGCG-AGTGAATATG
* * *
24299907 ATGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTCTAACTATG
1 A-GCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT-GAA-TATG
* * *
24299962 TAGCACTAAGTGTGCGATTTGATTACGTGGCACTAAGTGTGCGAGT
1 -AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGT
24300008 TGATTGTATA
Statistics
Matches: 86, Mismatches: 10, Indels: 8
0.83 0.10 0.08
Matches are distributed among these distances:
53 3 0.03
54 36 0.42
55 46 0.53
56 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (52 bp):
AGCACTAAGTGTGCGAATTGACTATGTGGCACTAAGTGTGCGAGTGAATATG
Found at i:24300012 original size:27 final size:27
Alignment explanation
Indices: 24299855--24300010 Score: 163
Period size: 27 Copynumber: 5.7 Consensus size: 27
24299845 AAATTGTACA
*
24299855 GCACTAAGTGTGCG-ATTCGACTATGTT
1 GCACTAAGTGTGCGAATT-GACTATGTG
* *
24299882 GCACTAAGTGTGCGAAATGAATATGAT-
1 GCACTAAGTGTGCGAATTGACTATG-TG
* *
24299909 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTG
* * *
24299936 GCACTAAGTGTGCGAGTCTAACTATGTA
1 GCACTAAGTGTGCGAAT-TGACTATGTG
* * *
24299964 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGAATTGACTATGTG
*
24299991 GCACTAAGTGTGCGAGTTGA
1 GCACTAAGTGTGCGAATTGA
24300011 TTGTATAGCA
Statistics
Matches: 108, Mismatches: 17, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
27 83 0.77
28 25 0.23
ACGTcount: A:0.27, C:0.17, G:0.28, T:0.28
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTG
Found at i:24300021 original size:27 final size:27
Alignment explanation
Indices: 24299847--24300031 Score: 101
Period size: 27 Copynumber: 6.8 Consensus size: 27
24299837 GCGGGATTAA
*
24299847 ATTGTACAGCACTAAGTGTGCG-ATTCG
1 ATTGTATAGCACTAAGTGTGCGAATT-G
*
24299874 ACTATGT-T-GCACTAAGTGTGCGAAATG
1 A-T-TGTATAGCACTAAGTGTGCGAATTG
24299901 AATATG-AT-GCACTAAGTGTGCGAATTG
1 -AT-TGTATAGCACTAAGTGTGCGAATTG
*** *** * *
24299928 ACCATGCGGCACTAAGTGTGCGAGTCTA
1 ATTGTATAGCACTAAGTGTGCGAAT-TG
* * * *
24299956 ACTATGTAGCACTAAGTGTGCGATTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*** * *
24299983 ATTACGTGGCACTAAGTGTGCGAGTTG
1 ATTGTATAGCACTAAGTGTGCGAATTG
*
24300010 ATTGTATAGCACTGAGTGTGCG
1 ATTGTATAGCACTAAGTGTGCG
24300032 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 24, Indels: 16
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.01
27 96 0.76
28 26 0.21
29 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (27 bp):
ATTGTATAGCACTAAGTGTGCGAATTG
Found at i:24300022 original size:82 final size:81
Alignment explanation
Indices: 24299847--24300031 Score: 210
Period size: 82 Copynumber: 2.3 Consensus size: 81
24299837 GCGGGATTAA
* * * *
24299847 ATTGTACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCA
1 ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
24299912 CTAAGTGTGCGAATTG
66 CTAAGTGTGCGAATTG
*** * * ** *
24299928 ACCATGCGGCACTAAGTGTGCGAGTCTAACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGG
1 ATTGTACAGCACTAAGTGTGCGAGTC-AACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-G
*
24299992 CACTAAGTGTGCGAGTTG
64 CACTAAGTGTGCGAATTG
* *
24300010 ATTGTATAGCACTGAGTGTGCG
1 ATTGTACAGCACTAAGTGTGCG
24300032 GGCTCAATAT
Statistics
Matches: 82, Mismatches: 20, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
81 21 0.26
82 61 0.74
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
ATTGTACAGCACTAAGTGTGCGAGTCAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCA
CTAAGTGTGCGAATTG
Found at i:24302363 original size:19 final size:18
Alignment explanation
Indices: 24302322--24302360 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
24302312 GCTTTTTTTA
* *
24302322 CAATTTTTTTTTCAACTT
1 CAATTTTTCTTTCAACCT
*
24302340 CAATTTTTCTTTCAGCCT
1 CAATTTTTCTTTCAACCT
24302358 CAA
1 CAA
24302361 ATTGTTGTTG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.23, C:0.23, G:0.03, T:0.51
Consensus pattern (18 bp):
CAATTTTTCTTTCAACCT
Found at i:24305454 original size:24 final size:25
Alignment explanation
Indices: 24305427--24305474 Score: 62
Period size: 26 Copynumber: 1.9 Consensus size: 25
24305417 ATTATACACT
*
24305427 ACACACACATA-CAATTTAATTAAA
1 ACACACAAATACCAATTTAATTAAA
*
24305451 ACACATAAATACTCAATTTAATTA
1 ACACACAAATAC-CAATTTAATTA
24305475 CACGAACTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 9 0.45
26 11 0.55
ACGTcount: A:0.52, C:0.19, G:0.00, T:0.29
Consensus pattern (25 bp):
ACACACAAATACCAATTTAATTAAA
Found at i:24320846 original size:29 final size:29
Alignment explanation
Indices: 24320799--24321139 Score: 403
Period size: 29 Copynumber: 11.8 Consensus size: 29
24320789 ATCGATTAAA
* ** *
24320799 GAAAAGGAATGGTTTCGACCATTGAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
*
24320828 GAAAAGGGATGGTGACGACCATCAAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
* * *
24320857 GAGAAGGGATAGTGACGACCATCGAATAA
1 GAAAAGGGATGGTGACGACCATCGAATAT
** **
24320886 GAAAAGGGATGGTTTCGACCATAAAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
* * *
24320915 GGAAAGGGATGGTGATGACCATCGAATAA
1 GAAAAGGGATGGTGACGACCATCGAATAT
* ** * *
24320944 GAAAAGGAATGGTTTCGACTATCTAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
* *
24320973 GAAAAGGGATGGTAACAACCATCGAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
24321002 GAAAAGGGATGGTGACGACCATCGAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
*
24321031 GAAAAGGGATGGTGACGACCATCAAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
* *
24321060 GAAAAGGAAAGGTGACGACCATCGAATAT
1 GAAAAGGGATGGTGACGACCATCGAATAT
* * *
24321089 GAAATGGGATGGTGACAACCATCGAATAC
1 GAAAAGGGATGGTGACGACCATCGAATAT
* **
24321118 GTAAAGGGATGGTTTCGACCAT
1 GAAAAGGGATGGTGACGACCAT
24321140 TGTTTAGCAC
Statistics
Matches: 259, Mismatches: 53, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 259 1.00
ACGTcount: A:0.40, C:0.13, G:0.28, T:0.20
Consensus pattern (29 bp):
GAAAAGGGATGGTGACGACCATCGAATAT
Found at i:24322508 original size:42 final size:41
Alignment explanation
Indices: 24322457--24322539 Score: 139
Period size: 42 Copynumber: 2.0 Consensus size: 41
24322447 ATATTTTATT
*
24322457 TTATTTTTTAGTAATTTATTAGAATAAGAGAATTATTTTCCC
1 TTATCTTTTAGTAATTTATTAGAATAAG-GAATTATTTTCCC
*
24322499 TTATCTTTTAGTAGTTTATTAGAATAAGGAATTATTTTCCC
1 TTATCTTTTAGTAATTTATTAGAATAAGGAATTATTTTCCC
24322540 AATTAGGTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 13 0.33
42 26 0.67
ACGTcount: A:0.31, C:0.08, G:0.11, T:0.49
Consensus pattern (41 bp):
TTATCTTTTAGTAATTTATTAGAATAAGGAATTATTTTCCC
Found at i:24330065 original size:40 final size:40
Alignment explanation
Indices: 24329835--24330058 Score: 285
Period size: 40 Copynumber: 5.6 Consensus size: 40
24329825 GAATGATGTT
* * * *
24329835 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAATC
* *
24329875 CGGACTAAGAT-CCGAAGGCATTTGTACGAGTTACTAAATC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
* *
24329915 TGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
24329955 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
24329995 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
*
24330035 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
24330059 AACGAGTAGC
Statistics
Matches: 167, Mismatches: 13, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
39 1 0.01
40 156 0.93
41 10 0.06
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:24330065 original size:120 final size:120
Alignment explanation
Indices: 24329835--24330091 Score: 283
Period size: 120 Copynumber: 2.1 Consensus size: 120
24329825 GAATGATGTT
* * *
24329835 CGGGCTAAGTCCCGAAGGCTTTGTGCTAGGTGACCATATCCGGACTAAGATCCGAAGGCATTTGT
1 CGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
* **
24329900 ACGAGTTACTAAATCTGGACTAAGATCCGAAGGCATTTGTGCGAGTTA-CTAAATC
66 ACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAG-TAGCTAAATC
* * **
24329955 CGGGTTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAATCCGGGTTAAG-TCCCGAAGGCATTT
1 CGGGTTAAGTCCCGAAGGC-TTTGTGCGAGGTGACCAAATCCGGACTAAGAT-CCGAAGGCATTT
* * * *
24330018 GTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATATC
64 GTACGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTGAACGAGTAGCTAAATC
* *
24330075 C-GGTTAAATTCCGAAGG
1 CGGGTTAAGTCCCGAAGG
24330092 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
119 18 0.16
120 88 0.76
121 10 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
CGGGTTAAGTCCCGAAGGCTTTGTGCGAGGTGACCAAATCCGGACTAAGATCCGAAGGCATTTGT
ACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGAACGAGTAGCTAAATC
Found at i:24332008 original size:31 final size:31
Alignment explanation
Indices: 24331953--24332015 Score: 110
Period size: 31 Copynumber: 2.0 Consensus size: 31
24331943 TGAGCTATCT
24331953 TGTACCCCGATGAATGCCTAAAAGTGTACTA
1 TGTACCCCGATGAATGCCTAAAAGTGTACTA
24331984 TGTACACCCGATGAATGCCT-AAAGTGTACTA
1 TGTAC-CCCGATGAATGCCTAAAAGTGTACTA
24332015 T
1 T
24332016 CTCTTGCTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
31 17 0.55
32 14 0.45
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (31 bp):
TGTACCCCGATGAATGCCTAAAAGTGTACTA
Found at i:24337662 original size:29 final size:29
Alignment explanation
Indices: 24337560--24337899 Score: 305
Period size: 29 Copynumber: 11.8 Consensus size: 29
24337550 ATCGATTAAA
* * *
24337560 GAAAAGGAATGGTTTCGACCATTGAATAT
1 GAAAAGGGATGGTTACGACCATCGAATAT
* * *
24337589 -AAAAAGGATGGTGACGACCA-CAAATAT
1 GAAAAGGGATGGTTACGACCATCGAATAT
* * * *
24337616 GAGAA-GGATAGTGACGACCATCGAATAA
1 GAAAAGGGATGGTTACGACCATCGAATAT
* **
24337644 GAAAAGGGATGGTTTCGACCATAAAATAT
1 GAAAAGGGATGGTTACGACCATCGAATAT
* *
24337673 GGAAAAGGGATGGTGATGACCATCGAATA-
1 -GAAAAGGGATGGTTACGACCATCGAATAT
* * * *
24337702 GAAAAGGAATGGTTGTCGACTATCTAATAT
1 GAAAAGGGATGGTT-ACGACCATCGAATAT
* *
24337732 GAAAAGGGATGGTAACAACCATCGAATAT
1 GAAAAGGGATGGTTACGACCATCGAATAT
*
24337761 GAAAAGGGATGGTGACGACCATCGAATAT
1 GAAAAGGGATGGTTACGACCATCGAATAT
* *
24337790 GAAAAGGGATGG-GAGCGACCATCAAATAT
1 GAAAAGGGATGGTTA-CGACCATCGAATAT
* * *
24337819 GAAAAGGAAAGGTGACGACCATCGAATTAT
1 GAAAAGGGATGGTTACGACCATCGAA-TAT
* * *
24337849 G-AAATGGATGGTTGACAACCATCGAATAC
1 GAAAAGGGATGGTT-ACGACCATCGAATAT
* *
24337878 GTAAAGGGATGGTTTCGACCAT
1 GAAAAGGGATGGTTACGACCAT
24337900 TGTTTAGCAC
Statistics
Matches: 251, Mismatches: 49, Indels: 22
0.78 0.15 0.07
Matches are distributed among these distances:
27 19 0.08
28 42 0.17
29 127 0.51
30 63 0.25
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.20
Consensus pattern (29 bp):
GAAAAGGGATGGTTACGACCATCGAATAT
Found at i:24337780 original size:117 final size:117
Alignment explanation
Indices: 24337632--24337899 Score: 337
Period size: 117 Copynumber: 2.3 Consensus size: 117
24337622 GATAGTGACG
*
24337632 ACCATCGAATAAGAAAAGGGATGGTTTCGACCATAAAATATGGAAAAGGGATGGTGA-TGACCAT
1 ACCATCGAATAAGAAAAGGGATGGTTTCGACCATAAAATAT-GAAAAGGGATGG-GAGCGACCAT
* * * * *
24337696 CGAATA-GAAAAGGAATGGTTGTCGACTATCTAA-TATGAAAAGGGATGG-TAACA
64 CAAATATGAAAAGGAAAGG-TGACGACCATCGAATTATG-AAAGGGATGGTTAACA
* ** **
24337749 ACCATCGAATATGAAAAGGGATGGTGACGACCATCGAATATGAAAAGGGATGGGAGCGACCATCA
1 ACCATCGAATAAGAAAAGGGATGGTTTCGACCATAAAATATGAAAAGGGATGGGAGCGACCATCA
* *
24337814 AATATGAAAAGGAAAGGTGACGACCATCGAATTATGAAATGGATGGTTGACA
66 AATATGAAAAGGAAAGGTGACGACCATCGAATTATGAAAGGGATGGTTAACA
* *
24337866 ACCATCGAATACGTAAAGGGATGGTTTCGACCAT
1 ACCATCGAATAAGAAAAGGGATGGTTTCGACCAT
24337900 TGTTTAGCAC
Statistics
Matches: 130, Mismatches: 17, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
115 2 0.02
116 43 0.33
117 85 0.65
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.20
Consensus pattern (117 bp):
ACCATCGAATAAGAAAAGGGATGGTTTCGACCATAAAATATGAAAAGGGATGGGAGCGACCATCA
AATATGAAAAGGAAAGGTGACGACCATCGAATTATGAAAGGGATGGTTAACA
Found at i:24339149 original size:18 final size:19
Alignment explanation
Indices: 24339128--24339173 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
24339118 GGGGATATTT
*
24339128 TAAAT-TTATTTCGGTAGA
1 TAAATCTTATTTAGGTAGA
*
24339146 TAAATCTTGTTTAGGTAGA
1 TAAATCTTATTTAGGTAGA
24339165 TAAATCTTA
1 TAAATCTTA
24339174 GAATAAATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.43
Consensus pattern (19 bp):
TAAATCTTATTTAGGTAGA
Found at i:24339262 original size:42 final size:41
Alignment explanation
Indices: 24339211--24339289 Score: 131
Period size: 42 Copynumber: 1.9 Consensus size: 41
24339201 ATATTTTATT
*
24339211 TTATTTTTTAGTAATTTATTAGAATAAGAGAATTATTTTCCC
1 TTATCTTTTAGTAATTTATTAGAATAAG-GAATTATTTTCCC
*
24339253 TTATCTTTTAGTAGTTTATTAGAATAAGGAATTATTT
1 TTATCTTTTAGTAATTTATTAGAATAAGGAATTATTT
24339290 CCCAATTAGG
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
41 9 0.26
42 26 0.74
ACGTcount: A:0.33, C:0.05, G:0.11, T:0.51
Consensus pattern (41 bp):
TTATCTTTTAGTAATTTATTAGAATAAGGAATTATTTTCCC
Found at i:24346695 original size:40 final size:40
Alignment explanation
Indices: 24346505--24346726 Score: 267
Period size: 40 Copynumber: 5.6 Consensus size: 40
24346495 GAATGATGTT
* * * *
24346505 CGGGCTAAGTCCCGAAGGC-TTTGTGCTAGGTGACCATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGA-GTTACTAAATC
* *
24346545 CGGACTAAGAT-CCGAA-GCATTTGTACGAGTTACTAAATC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
* *
24346584 TGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
24346624 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
*
24346664 CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAC-ATAA-C
1 CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATC
*
24346703 CGGGCTATGTCCCGAAGGCATTTG
1 CGGGCTAAGTCCCGAAGGCATTTG
24346727 AACGAGTAGC
Statistics
Matches: 164, Mismatches: 13, Indels: 11
0.87 0.07 0.06
Matches are distributed among these distances:
39 50 0.30
40 113 0.69
41 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATC
Found at i:24348661 original size:31 final size:31
Alignment explanation
Indices: 24348623--24348685 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
24348613 TGAGCTATCT
24348623 TGTACACCCGATGAATGCCTAAAGTGTACTA
1 TGTACACCCGATGAATGCCTAAAGTGTACTA
24348654 TGTACACCCGATGAATGCCTAAAGTGTACTA
1 TGTACACCCGATGAATGCCTAAAGTGTACTA
24348685 T
1 T
24348686 CTCCTTGCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.22, G:0.19, T:0.27
Consensus pattern (31 bp):
TGTACACCCGATGAATGCCTAAAGTGTACTA
Found at i:24356763 original size:29 final size:29
Alignment explanation
Indices: 24356700--24356767 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
24356690 TAATCAACCA
24356700 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
24356729 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
24356758 CGCACACTTA
1 CGCACACTTA
24356768 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:24356920 original size:174 final size:174
Alignment explanation
Indices: 24356590--24357089 Score: 896
Period size: 174 Copynumber: 2.9 Consensus size: 174
24356580 AACTCAAGGA
* *
24356590 ACTTACCTTTTCCGCTGTCCAAAATTGACTCGGTAAAGTCGCACCCTTCATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
*
24356655 GAAAATATATACTGGGTT-GCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATGC
24356719 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
24356763 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
24356828 GAAAATATATATTGGGTTCGCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATGC
66 GAAAATATATATTGGGTTCGCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATGC
24356893 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
131 ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
24356937 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
1 ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
* * * * * *
24357002 GAAAATATATATTGGGTTCGCACACGTAGTGCTTAATAATCAACCGCG-ACACTTAGTGCCATGT
66 GAAAATATATATTGGGTTCGCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATGC
*
24357066 ACTTTAAACTCGCACACTTAGTGC
131 ACTTTAAACTCACACACTTAGTGC
24357090 TGTACAATTT
Statistics
Matches: 316, Mismatches: 10, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
173 118 0.37
174 198 0.63
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.30
Consensus pattern (174 bp):
ACTTACCTTTTCCGCTGTCCAAAATCGACTCGGTAAAGTCGCACCCTTAATGTAAATAATTTATA
GAAAATATATATTGGGTTCGCACACATAATGTTTAGTAATCAACCACGCACACTTAGTGCCATGC
ACTTTAAACTCACACACTTAGTGCCATGCATTTCAAGTTCGCAC
Found at i:24356937 original size:29 final size:29
Alignment explanation
Indices: 24356874--24356941 Score: 93
Period size: 29 Copynumber: 2.3 Consensus size: 29
24356864 TAATCAACCA
24356874 CGCACACTTAGTGCCATGCACTTTAAACT
1 CGCACACTTAGTGCCATGCACTTTAAACT
* **
24356903 CACACACTTAGTGCCATGCA-TTTCAAGTT
1 CGCACACTTAGTGCCATGCACTTT-AAACT
24356932 CGCACACTTA
1 CGCACACTTA
24356942 CCTTTTCCGC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 3 0.09
29 31 0.91
ACGTcount: A:0.28, C:0.31, G:0.13, T:0.28
Consensus pattern (29 bp):
CGCACACTTAGTGCCATGCACTTTAAACT
Found at i:24357084 original size:29 final size:30
Alignment explanation
Indices: 24357045--24357120 Score: 104
Period size: 29 Copynumber: 2.6 Consensus size: 30
24357035 TAATAATCAA
24357045 CCGCGACACTTAGTGCCATGTAC-TTTAAAC
1 CCGC-ACACTTAGTGCCATGTACATTTAAAC
*
24357075 TCGCACACTTAGTG-C-TGTACAATTTAAAC
1 CCGCACACTTAGTGCCATGTAC-ATTTAAAC
24357104 CCGCACACTTAGTGCCA
1 CCGCACACTTAGTGCCA
24357121 ATCTCATGAC
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
27 5 0.12
28 1 0.03
29 30 0.75
30 4 0.10
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.26
Consensus pattern (30 bp):
CCGCACACTTAGTGCCATGTACATTTAAAC
Found at i:24369742 original size:26 final size:26
Alignment explanation
Indices: 24369708--24369773 Score: 98
Period size: 26 Copynumber: 2.5 Consensus size: 26
24369698 AAACTCTTTT
*
24369708 AAAAGAAAACTCAAGAGAA-ATTCTTA
1 AAAAGAAAACTCAAGAGAAGA-ACTTA
*
24369734 AAAAGAAAACTCAAGATAAGAACTTA
1 AAAAGAAAACTCAAGAGAAGAACTTA
24369760 AAAAGAAAACTCAA
1 AAAAGAAAACTCAA
24369774 AGATCATTTT
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
26 36 0.97
27 1 0.03
ACGTcount: A:0.62, C:0.12, G:0.11, T:0.15
Consensus pattern (26 bp):
AAAAGAAAACTCAAGAGAAGAACTTA
Found at i:24372659 original size:40 final size:40
Alignment explanation
Indices: 24372604--24372814 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
24372594 ATTTGAATGA
*
24372604 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
24372644 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
24372684 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
24372724 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
24372764 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
24372804 TATCC-GGCTAA
1 TATCCGGGCTAA
24372815 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:24380863 original size:40 final size:40
Alignment explanation
Indices: 24380808--24381018 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
24380798 ATTTGAATGA
*
24380808 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
24380848 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
24380888 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
24380928 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
24380968 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
24381008 TATCC-GGCTAA
1 TATCCGGGCTAA
24381019 ATTCCGGAGA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:24390388 original size:28 final size:28
Alignment explanation
Indices: 24390357--24390416 Score: 66
Period size: 28 Copynumber: 2.1 Consensus size: 28
24390347 CATGTAGTAG
* * *
24390357 CAGTCTGGGCCTGAGCCCTATACAGCAA
1 CAGTCTAGGCCTGAGCCCAATAAAGCAA
* * *
24390385 CAGTGTAGGCCTTAGCCCAATAAAGTAA
1 CAGTCTAGGCCTGAGCCCAATAAAGCAA
24390413 CAGT
1 CAGT
24390417 ACAATGCAAT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (28 bp):
CAGTCTAGGCCTGAGCCCAATAAAGCAA
Found at i:24390596 original size:26 final size:26
Alignment explanation
Indices: 24390522--24390598 Score: 109
Period size: 26 Copynumber: 3.0 Consensus size: 26
24390512 ACACCAATAT
* * *
24390522 CGCAGCAAAGCTGCCAGTAATAATGA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
*
24390548 TGCAGCAAAGCTGCCAGTAACAGTAA
1 CGCAGCAAAGCTGCCAGTAACAGTAA
*
24390574 CGCATCAAAGCTGCCAGTAACAGTA
1 CGCAGCAAAGCTGCCAGTAACAGTA
24390599 TATGTGGCAA
Statistics
Matches: 45, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.16
Consensus pattern (26 bp):
CGCAGCAAAGCTGCCAGTAACAGTAA
Found at i:24390792 original size:27 final size:27
Alignment explanation
Indices: 24390762--24390840 Score: 97
Period size: 27 Copynumber: 2.9 Consensus size: 27
24390752 TTTCAACTCC
**
24390762 TAGGGGTATAACAGTCATTTTACCCTA
1 TAGGGGTATTTCAGTCATTTTACCCTA
*
24390789 TAGGGGTATTTCAGTCTTTTTA-CCTA
1 TAGGGGTATTTCAGTCATTTTACCCTA
* *
24390815 TCGAGGGTATTTCGGTCATTTTACCC
1 TAG-GGGTATTTCAGTCATTTTACCC
24390841 ATCCAAGGTA
Statistics
Matches: 44, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
26 6 0.14
27 36 0.82
28 2 0.05
ACGTcount: A:0.22, C:0.19, G:0.20, T:0.39
Consensus pattern (27 bp):
TAGGGGTATTTCAGTCATTTTACCCTA
Found at i:24390850 original size:27 final size:27
Alignment explanation
Indices: 24390793--24390862 Score: 86
Period size: 27 Copynumber: 2.6 Consensus size: 27
24390783 ACCCTATAGG
* * * * *
24390793 GGTATTTCAGTCTTTTTACCTATCGAG
1 GGTATTTCGGTCATTTTACCCATCCAA
24390820 GGTATTTCGGTCATTTTACCCATCCAA
1 GGTATTTCGGTCATTTTACCCATCCAA
*
24390847 GGTATTTCGATCATTT
1 GGTATTTCGGTCATTT
24390863 GCCCACAAAT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.20, C:0.20, G:0.17, T:0.43
Consensus pattern (27 bp):
GGTATTTCGGTCATTTTACCCATCCAA
Found at i:24395294 original size:22 final size:23
Alignment explanation
Indices: 24395255--24395297 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
24395245 TAGGGGCACG
*
24395255 TAATATCCCGAAAATTACTACTT
1 TAATACCCCGAAAATTACTACTT
24395278 TAATACCCCG-AAATTACTAC
1 TAATACCCCGAAAATTACTAC
24395298 AGTAAGAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.40, C:0.26, G:0.05, T:0.30
Consensus pattern (23 bp):
TAATACCCCGAAAATTACTACTT
Found at i:24397940 original size:14 final size:14
Alignment explanation
Indices: 24397921--24397962 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
24397911 GTTTGATTGG
24397921 CAGTAAAATGTTTT
1 CAGTAAAATGTTTT
*
24397935 CAGTAAAATGATTT
1 CAGTAAAATGTTTT
* *
24397949 CTGGAAAATGTTTT
1 CAGTAAAATGTTTT
24397963 ACTTTTCTGT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.36, C:0.07, G:0.17, T:0.40
Consensus pattern (14 bp):
CAGTAAAATGTTTT
Found at i:24397971 original size:20 final size:20
Alignment explanation
Indices: 24397946--24397985 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
24397936 AGTAAAATGA
*
24397946 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
24397966 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
24397986 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:24397975 original size:34 final size:35
Alignment explanation
Indices: 24397931--24397997 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
24397921 CAGTAAAATG
*
24397931 TTTTCAGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCAGTAAAATGATTTACTGGAAAATATTTTAC
*
24397965 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCAGTAAAATGATTTACTGGAAAATATTTT
24397998 CTGTTGTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCAGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:24398414 original size:18 final size:18
Alignment explanation
Indices: 24398391--24398459 Score: 84
Period size: 18 Copynumber: 3.8 Consensus size: 18
24398381 AGCTCTCAGG
24398391 CATTCTTCTCCCTTCATC
1 CATTCTTCTCCCTTCATC
* *
24398409 CATTCTTTTCCTTTCATC
1 CATTCTTCTCCCTTCATC
* ***
24398427 CAGTAAGCTCCCTTCATC
1 CATTCTTCTCCCTTCATC
24398445 CATTCTTCTCCCTTC
1 CATTCTTCTCCCTTC
24398460 CTTCATTCCT
Statistics
Matches: 39, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 39 1.00
ACGTcount: A:0.13, C:0.41, G:0.03, T:0.43
Consensus pattern (18 bp):
CATTCTTCTCCCTTCATC
Found at i:24402089 original size:50 final size:50
Alignment explanation
Indices: 24401991--24402570 Score: 734
Period size: 50 Copynumber: 11.5 Consensus size: 50
24401981 TGTGAGCAAG
* * *
24401991 TGTAAGACCATGTCTGGGACATGGCATTGACATCATTGAGATTATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCA-C--CGAG---ATGAGAGGTCCCA
* * *
24402047 TGTAAGACCATGTCTGAGACATGGCGTTTGTACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
*
24402097 TGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
24402147 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
*
24402197 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* **
24402247 TGTAAGACCATGTCTGGGACATGGCGTTGGCACTGAGATGAGAGGTTTCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * *
24402297 TGTAAGACCATGTCTAGGACATGACGTTGGCACTGAGATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* *
24402347 TGTAAGACCATGTCTGGGACATGGTGTTGGCACCGAGATGAGAGGTCTCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * *
24402397 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-GAATCAAAGGTCCCC
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAG-ATGAGAGGTCCCA
* * * * * **
24402447 CGTAAGACCGTGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
* * * * * * * * **
24402497 TGTAAAACCATATCTAGGATATGGCATTGGCA--GTACAGGAAACATCCCA
1 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCG-AGATGAGAGGTCCCA
*
24402546 TGTAAGACCATGTCTCGGACATGGC
1 TGTAAGACCATGTCTGGGACATGGC
24402571 TTTTGCATGT
Statistics
Matches: 465, Mismatches: 56, Indels: 13
0.87 0.10 0.02
Matches are distributed among these distances:
48 1 0.00
49 32 0.07
50 401 0.86
53 3 0.01
55 1 0.00
56 27 0.06
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.22
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCA
Found at i:24408701 original size:28 final size:27
Alignment explanation
Indices: 24408665--24408744 Score: 88
Period size: 28 Copynumber: 2.9 Consensus size: 27
24408655 CATGCAGTAG
* *
24408665 CAGTTTGGGCTTGAGCCCTATACAGCAA
1 CAGTGTGGGCTT-AGCCCAATACAGCAA
*
24408693 CAGTGTGGGCCTTAGCCCAATACAGTAA
1 CAGTGTGGG-CTTAGCCCAATACAGCAA
* *
24408721 CAGTGTGGGCCTTAACCTAATACA
1 CAGTGTGGG-CTTAGCCCAATACA
24408745 ATAACAGTAC
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 43 0.93
29 3 0.07
ACGTcount: A:0.28, C:0.25, G:0.24, T:0.24
Consensus pattern (27 bp):
CAGTGTGGGCTTAGCCCAATACAGCAA
Found at i:24408749 original size:28 final size:28
Alignment explanation
Indices: 24408691--24408752 Score: 97
Period size: 28 Copynumber: 2.2 Consensus size: 28
24408681 CCTATACAGC
* *
24408691 AACAGTGTGGGCCTTAGCCCAATACAGT
1 AACAGTGTGGGCCTTAACCCAATACAAT
*
24408719 AACAGTGTGGGCCTTAACCTAATACAAT
1 AACAGTGTGGGCCTTAACCCAATACAAT
24408747 AACAGT
1 AACAGT
24408753 ACAATGCAGT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.34, C:0.23, G:0.21, T:0.23
Consensus pattern (28 bp):
AACAGTGTGGGCCTTAACCCAATACAAT
Found at i:24408889 original size:26 final size:26
Alignment explanation
Indices: 24408860--24408919 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
24408850 ACCAATATCA
* * *
24408860 CAGCAAAGGTGCCAGTAATAATGACG
1 CAGCAAAGGTACCAATAATAATAACG
*
24408886 CAGCAAAGGTACCAATAATAGTAACG
1 CAGCAAAGGTACCAATAATAATAACG
24408912 CAGCAAAG
1 CAGCAAAG
24408920 CCGCTAGTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.43, C:0.20, G:0.23, T:0.13
Consensus pattern (26 bp):
CAGCAAAGGTACCAATAATAATAACG
Found at i:24409140 original size:27 final size:27
Alignment explanation
Indices: 24409110--24409198 Score: 126
Period size: 27 Copynumber: 3.3 Consensus size: 27
24409100 GAGTTGTAAT
24409110 AGTCATTTTACCCTAT-GAGGGTATTTC
1 AGTCATTTTACCC-ATCGAGGGTATTTC
24409137 AGTCATTTTACCCATCGAGGGTATTTC
1 AGTCATTTTACCCATCGAGGGTATTTC
* * * *
24409164 GGTCATCTTACCCATCCAAGGTATTTC
1 AGTCATTTTACCCATCGAGGGTATTTC
24409191 AGTCATTT
1 AGTCATTT
24409199 GTCCACAAAT
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
26 2 0.04
27 53 0.96
ACGTcount: A:0.22, C:0.22, G:0.17, T:0.38
Consensus pattern (27 bp):
AGTCATTTTACCCATCGAGGGTATTTC
Found at i:24409827 original size:22 final size:22
Alignment explanation
Indices: 24409792--24409833 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
24409782 AGTGTATTTG
*
24409792 GAAAACAAAGAGAAGAGAAATC
1 GAAAACAAAGAGAAAAGAAATC
24409814 GAAAA-AAAGAAGAAAAGAAA
1 GAAAACAAAG-AGAAAAGAAA
24409834 ATATTCGACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.71, C:0.05, G:0.21, T:0.02
Consensus pattern (22 bp):
GAAAACAAAGAGAAAAGAAATC
Found at i:24415320 original size:25 final size:26
Alignment explanation
Indices: 24415264--24415335 Score: 74
Period size: 26 Copynumber: 2.7 Consensus size: 26
24415254 ATCAATAAAA
*
24415264 AATAAGAATAAATAATAAAACAAATGAC
1 AATAAGAATAAAT-A-AAAACAAAGGAC
*
24415292 AATAAGAATAAATAAAAA-AAAGGAT
1 AATAAGAATAAATAAAAACAAAGGAC
* *
24415317 AATAAAAAATATATAAAAA
1 AAT-AAGAATAAATAAAAA
24415336 TAATAATAAC
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
25 8 0.21
26 17 0.44
27 1 0.03
28 13 0.33
ACGTcount: A:0.72, C:0.03, G:0.07, T:0.18
Consensus pattern (26 bp):
AATAAGAATAAATAAAAACAAAGGAC
Found at i:24416539 original size:18 final size:18
Alignment explanation
Indices: 24416516--24416558 Score: 68
Period size: 18 Copynumber: 2.3 Consensus size: 18
24416506 AATTTTTGTC
24416516 ATAAAATAATTAACTTTT
1 ATAAAATAATTAACTTTT
*
24416534 ATAAAATAATTAATTTTT
1 ATAAAATAATTAACTTTT
24416552 ATTAAAA
1 A-TAAAA
24416559 ATTTGAACAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 18 0.78
19 5 0.22
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
ATAAAATAATTAACTTTT
Found at i:24431076 original size:32 final size:32
Alignment explanation
Indices: 24431035--24431101 Score: 107
Period size: 32 Copynumber: 2.1 Consensus size: 32
24431025 GAACCATTAG
*
24431035 TATAATATCGGATACTTAGGAATTTCACACAC
1 TATAATATCGGATACTTAGGAATCTCACACAC
* *
24431067 TATAATATCGGATACTTGGGAGTCTCACACAC
1 TATAATATCGGATACTTAGGAATCTCACACAC
24431099 TAT
1 TAT
24431102 GTGCTAACAC
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.34, C:0.19, G:0.15, T:0.31
Consensus pattern (32 bp):
TATAATATCGGATACTTAGGAATCTCACACAC
Found at i:24436289 original size:15 final size:15
Alignment explanation
Indices: 24436249--24436289 Score: 57
Period size: 15 Copynumber: 2.7 Consensus size: 15
24436239 ATCTATATAA
*
24436249 TCAAATTTAACTCAT
1 TCAAATTTAATTCAT
24436264 TCAAATTTAATTCTAT
1 TCAAATTTAATTC-AT
24436280 TC-AATTTAAT
1 TCAAATTTAAT
24436290 CCAAAAATCA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 20 0.83
16 4 0.17
ACGTcount: A:0.39, C:0.15, G:0.00, T:0.46
Consensus pattern (15 bp):
TCAAATTTAATTCAT
Found at i:24451446 original size:21 final size:22
Alignment explanation
Indices: 24451422--24451469 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
24451412 GTTCGGGATC
*
24451422 GCACTCTGGTGCCTCTA-AATT
1 GCACTCTGATGCCTCTATAATT
* *
24451443 GCACTTTGATGCCTCTATATTT
1 GCACTCTGATGCCTCTATAATT
24451465 GCACT
1 GCACT
24451470 ACAGTTCCTC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 15 0.65
22 8 0.35
ACGTcount: A:0.19, C:0.27, G:0.17, T:0.38
Consensus pattern (22 bp):
GCACTCTGATGCCTCTATAATT
Found at i:24460904 original size:49 final size:49
Alignment explanation
Indices: 24460782--24460913 Score: 124
Period size: 49 Copynumber: 2.7 Consensus size: 49
24460772 GAGGTCCCCC
* * *
24460782 GTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCTAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCA-CGACAAGAGAACTCCCAT
* * * * *
24460832 GTAAGACCATATCGGGGATATGGCATTGTCA-GTACAAGA-AACATCCCAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCACG-ACAAGAGAAC-TCCCAT
* * *
24460881 GTAAGACCATGTTTGGGACATGGCTTTGGCACG
1 GTAAGACCATGTCTGGGACATGGCATGGGCACG
24460914 TTATTATTAG
Statistics
Matches: 65, Mismatches: 14, Indels: 6
0.76 0.16 0.07
Matches are distributed among these distances:
48 4 0.06
49 34 0.52
50 27 0.42
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.23
Consensus pattern (49 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCACGACAAGAGAACTCCCAT
Found at i:24468061 original size:50 final size:50
Alignment explanation
Indices: 24467950--24468196 Score: 223
Period size: 50 Copynumber: 4.8 Consensus size: 50
24467940 ATTTGGGTAA
*
24467950 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCATTGAGATTATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-C--CGAG---ATG
* *
24468006 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCACCGAGATG
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * * *
24468056 AGAGGTCCTC-CGTAAGACCATGTCTAGGACATGGCATCGGCACCGATATG
1 AGAGATCC-CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
* * * ** * *
24468106 AGA-ACTCCCATGTAAGACCATATATGGGATATGTAATTGGCA--GTACAAG
1 AGAGA-TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-AGATG
* * *
24468155 AAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
24468197 TGTTATTATC
Statistics
Matches: 160, Mismatches: 26, Indels: 17
0.79 0.13 0.08
Matches are distributed among these distances:
48 1 0.01
49 37 0.23
50 77 0.48
51 1 0.01
53 3 0.02
55 1 0.01
56 40 0.25
ACGTcount: A:0.29, C:0.21, G:0.27, T:0.23
Consensus pattern (50 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATG
Found at i:24470294 original size:20 final size:21
Alignment explanation
Indices: 24470251--24470294 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
24470241 CGTAAGCATG
*
24470251 TAGAAATTATATGTGAACCTT
1 TAGAAATTATATGTCAACCTT
*
24470272 TAGAAATTATATG-CAATCTT
1 TAGAAATTATATGTCAACCTT
24470292 TAG
1 TAG
24470295 TTGCTTAATA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.39
Consensus pattern (21 bp):
TAGAAATTATATGTCAACCTT
Found at i:24473380 original size:33 final size:34
Alignment explanation
Indices: 24473316--24473382 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 34
24473306 AGTAGTTATG
*
24473316 CAGTATCAGTCTGGGCCTGAACCCTATACAGTAA
1 CAGTATCAGTCTGGGCCTGAACCCTAAACAGTAA
* *
24473350 CAGTAT-AGTGTGGGCCT-TACCCTAAAACAGTAA
1 CAGTATCAGTCTGGGCCTGAACCCT-AAACAGTAA
24473383 TAATGTGGGC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
32 5 0.17
33 18 0.62
34 6 0.21
ACGTcount: A:0.31, C:0.24, G:0.21, T:0.24
Consensus pattern (34 bp):
CAGTATCAGTCTGGGCCTGAACCCTAAACAGTAA
Found at i:24473392 original size:28 final size:28
Alignment explanation
Indices: 24473348--24473430 Score: 125
Period size: 28 Copynumber: 3.0 Consensus size: 28
24473338 CCTATACAGT
24473348 AACAGT-ATAGTGTGGGCCTTA-CCCTAA
1 AACAGTAATAGTGTGGGCCTTAGCCC-AA
* *
24473375 AACAGTAATAATGTGGGCCTTAGCCCAT
1 AACAGTAATAGTGTGGGCCTTAGCCCAA
24473403 AACAGTAATAGTGTGGGCCTTAGCCCAA
1 AACAGTAATAGTGTGGGCCTTAGCCCAA
24473431 TACAATAACC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 6 0.12
28 41 0.82
29 3 0.06
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.24
Consensus pattern (28 bp):
AACAGTAATAGTGTGGGCCTTAGCCCAA
Found at i:24479508 original size:30 final size:29
Alignment explanation
Indices: 24479466--24479523 Score: 89
Period size: 30 Copynumber: 2.0 Consensus size: 29
24479456 GTGTGGAAGT
*
24479466 AAAAAAATAAATTGAGATTAAAAAAAAGA
1 AAAAAAACAAATTGAGATTAAAAAAAAGA
*
24479495 AAAACAAACAAATTGTGATTAAAAAAAAG
1 AAAA-AAACAAATTGAGATTAAAAAAAAG
24479524 TCTGGATGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 4 0.15
30 22 0.85
ACGTcount: A:0.69, C:0.03, G:0.10, T:0.17
Consensus pattern (29 bp):
AAAAAAACAAATTGAGATTAAAAAAAAGA
Found at i:24480697 original size:12 final size:12
Alignment explanation
Indices: 24480675--24480746 Score: 51
Period size: 12 Copynumber: 6.0 Consensus size: 12
24480665 AAGAGTGTGT
*
24480675 GAAAAAAGAAAA
1 GAAAGAAGAAAA
*
24480687 GAAAGATGAAAAA
1 GAAAGAAG-AAAA
*
24480700 GAAA-AAGAAATT
1 GAAAGAAGAAA-A
*
24480712 GAAAGAAAAAAA
1 GAAAGAAGAAAA
*
24480724 GAAAGTGAGAAAA
1 GAAAG-AAGAAAA
24480737 -AAAG-AGAAAA
1 GAAAGAAGAAAA
24480747 AGAATTTCTA
Statistics
Matches: 48, Mismatches: 8, Indels: 10
0.73 0.12 0.15
Matches are distributed among these distances:
10 6 0.12
11 3 0.06
12 21 0.44
13 18 0.38
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.06
Consensus pattern (12 bp):
GAAAGAAGAAAA
Found at i:24480704 original size:24 final size:23
Alignment explanation
Indices: 24480677--24480750 Score: 78
Period size: 24 Copynumber: 3.1 Consensus size: 23
24480667 GAGTGTGTGA
24480677 AAAAAGAAAAGAAAGATGAAAAAG
1 AAAAAGAAAAGAAAGA-GAAAAAG
* *
24480701 AAAAAGAAATTGAAAGAAAAAAAG
1 AAAAAGAAA-AGAAAGAGAAAAAG
*
24480725 AAAGTGAGAAAA-AAAGAGAAAAAG
1 AAA--AAGAAAAGAAAGAGAAAAAG
24480749 AA
1 AA
24480751 TTTCTAAAAG
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
24 31 0.74
25 6 0.14
26 5 0.12
ACGTcount: A:0.74, C:0.00, G:0.20, T:0.05
Consensus pattern (23 bp):
AAAAAGAAAAGAAAGAGAAAAAG
Found at i:24480739 original size:19 final size:19
Alignment explanation
Indices: 24480656--24480739 Score: 73
Period size: 19 Copynumber: 4.4 Consensus size: 19
24480646 AAAGAACATG
* ** *
24480656 GAAAAGAAAAAGAGTGTGT
1 GAAAAAAAAAAGAAAGTGA
24480675 GAAAAAAGAAAAGAAAGATGA
1 GAAAAAA-AAAAGAAAG-TGA
* *
24480696 -AAAAGAAAAAGAAATTGA
1 GAAAAAAAAAAGAAAGTGA
*
24480714 -AAGAAAAAAAGAAAGTGA
1 GAAAAAAAAAAGAAAGTGA
24480732 GAAAAAAA
1 GAAAAAAA
24480740 GAGAAAAAGA
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
18 18 0.35
19 20 0.38
20 12 0.23
21 2 0.04
ACGTcount: A:0.69, C:0.00, G:0.23, T:0.08
Consensus pattern (19 bp):
GAAAAAAAAAAGAAAGTGA
Found at i:24480744 original size:18 final size:17
Alignment explanation
Indices: 24480673--24480745 Score: 83
Period size: 18 Copynumber: 4.0 Consensus size: 17
24480663 AAAAGAGTGT
24480673 GTGAAAAAAGAAAAGAAA
1 GTGAAAAAA-AAAAGAAA
24480691 GATGAAAAAGAAAAAGAAA
1 G-TGAAAAA-AAAAAGAAA
*
24480710 TTGAAAGAAAAAAAGAAA
1 GTGAAA-AAAAAAAGAAA
*
24480728 GTGAGAAAAAAAGAGAAA
1 GTGA-AAAAAAAAAGAAA
24480746 AAGAATTTCT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
18 28 0.58
19 19 0.40
20 1 0.02
ACGTcount: A:0.71, C:0.00, G:0.22, T:0.07
Consensus pattern (17 bp):
GTGAAAAAAAAAAGAAA
Found at i:24482594 original size:43 final size:43
Alignment explanation
Indices: 24482547--24482680 Score: 125
Period size: 43 Copynumber: 3.1 Consensus size: 43
24482537 TGCTAAGTGC
24482547 TGATTCCACCGTATATTTGATTGTGAAAGGGGTTTCAATGTGT
1 TGATTCCACCGTATATTTGATTGTGAAAGGGGTTTCAATGTGT
* * * * *
24482590 TGATTCC-CCGTATCA-CTAAATAT-AAAGGTGGTTGCTAA-GTGT
1 TGATTCCACCGTAT-ATTTGATTGTGAAAGG-GGTTTC-AATGTGT
* * *
24482632 TGATTCCACCGTATCTTTGATTGTGAAAGCGGTTGT-TATGTGT
1 TGATTCCACCGTATATTTGATTGTGAAAGGGGTT-TCAATGTGT
24482675 TGATTC
1 TGATTC
24482681 TCCGTATCAC
Statistics
Matches: 70, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
41 5 0.07
42 27 0.39
43 34 0.49
44 4 0.06
ACGTcount: A:0.23, C:0.14, G:0.24, T:0.39
Consensus pattern (43 bp):
TGATTCCACCGTATATTTGATTGTGAAAGGGGTTTCAATGTGT
Found at i:24482636 original size:85 final size:84
Alignment explanation
Indices: 24482527--24482726 Score: 294
Period size: 85 Copynumber: 2.4 Consensus size: 84
24482517 TTATTGATTC
* * *
24482527 TAAAAGTGGTTGCTAAGTGCTGATTCCACCGTATATTTGATTGTGAAAGGGGTT-TCAATGTGTT
1 TAAAGGTGGTTGCTAAGTGTTGATTCCACCGTATATTTGATTGTGAAAGCGGTTGT-AATGTGTT
24482591 GATTCCCCGTATCACTAAAT
65 GATTCCCCGTATCACTAAAT
* *
24482611 ATAAAGGTGGTTGCTAAGTGTTGATTCCACCGTATCTTTGATTGTGAAAGCGGTTGTTATGTGTT
1 -TAAAGGTGGTTGCTAAGTGTTGATTCCACCGTATATTTGATTGTGAAAGCGGTTGTAATGTGTT
* *
24482676 GATTCTCCGTATCACTGAAT
65 GATTCCCCGTATCACTAAAT
* *
24482696 TTAAGGTGGTTGCTAAGTGTTGAATCCACCG
1 TAAAGGTGGTTGCTAAGTGTTGATTCCACCG
24482727 AGTAACGGAT
Statistics
Matches: 105, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
84 29 0.28
85 75 0.71
86 1 0.01
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.36
Consensus pattern (84 bp):
TAAAGGTGGTTGCTAAGTGTTGATTCCACCGTATATTTGATTGTGAAAGCGGTTGTAATGTGTTG
ATTCCCCGTATCACTAAAT
Found at i:24485524 original size:21 final size:21
Alignment explanation
Indices: 24485495--24485535 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
24485485 TGAAACAACG
*
24485495 AGTTGAATCGGTCTAAAAACC
1 AGTTAAATCGGTCTAAAAACC
24485516 AGTTAAATCGGTCTAAAAAC
1 AGTTAAATCGGTCTAAAAAC
24485536 TGATTGAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.41, C:0.17, G:0.17, T:0.24
Consensus pattern (21 bp):
AGTTAAATCGGTCTAAAAACC
Found at i:24486033 original size:50 final size:50
Alignment explanation
Indices: 24485956--24486097 Score: 257
Period size: 50 Copynumber: 2.8 Consensus size: 50
24485946 AGAATATTTC
* * *
24485956 CTAGAAGAATTAACAATAGAAGGACATGGATTAGGTGGAGGAGCACAATG
1 CTAGAAGAAGTAACAAGAGAAGAACATGGATTAGGTGGAGGAGCACAATG
24486006 CTAGAAGAAGTAACAAGAGAAGAACATGGATTAGGTGGAGGAGCACAATG
1 CTAGAAGAAGTAACAAGAGAAGAACATGGATTAGGTGGAGGAGCACAATG
24486056 CTAGAAGAAGTAACAAGAGAAGAACATGGATTAGGTGGAGGA
1 CTAGAAGAAGTAACAAGAGAAGAACATGGATTAGGTGGAGGA
24486098 CTACAAGCAT
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
50 89 1.00
ACGTcount: A:0.44, C:0.09, G:0.32, T:0.15
Consensus pattern (50 bp):
CTAGAAGAAGTAACAAGAGAAGAACATGGATTAGGTGGAGGAGCACAATG
Found at i:24493757 original size:17 final size:17
Alignment explanation
Indices: 24493735--24493767 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
24493725 GACAATGGCA
24493735 TGGTTAGTGAAAACGTT
1 TGGTTAGTGAAAACGTT
24493752 TGGTTAGTGAAAACGT
1 TGGTTAGTGAAAACGT
24493768 GAAGGTATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.06, G:0.30, T:0.33
Consensus pattern (17 bp):
TGGTTAGTGAAAACGTT
Found at i:24494441 original size:27 final size:26
Alignment explanation
Indices: 24494410--24494464 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
24494400 TAACTAAAAT
24494410 TAAATTAAATTAGAGAAATATATTAAA
1 TAAATTAAATTAGAG-AATATATTAAA
** *
24494437 TAAATTGGATTTGAGAATATATTAAA
1 TAAATTAAATTAGAGAATATATTAAA
24494463 TA
1 TA
24494465 TTAATGAGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
26 13 0.52
27 12 0.48
ACGTcount: A:0.53, C:0.00, G:0.11, T:0.36
Consensus pattern (26 bp):
TAAATTAAATTAGAGAATATATTAAA
Found at i:24508253 original size:22 final size:19
Alignment explanation
Indices: 24508222--24508268 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 19
24508212 AAAGATGATA
24508222 ATTATTAATATATAATTATATCT
1 ATTA-TAATATAT-ATTA-AT-T
24508245 ATTATAATATATATTAATT
1 ATTATAATATATATTAATT
24508264 ATTAT
1 ATTAT
24508269 CTACTTTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 6 0.25
20 2 0.08
21 4 0.17
22 8 0.33
23 4 0.17
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
ATTATAATATATATTAATT
Found at i:24508264 original size:16 final size:15
Alignment explanation
Indices: 24508224--24508265 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
24508214 AGATGATAAT
24508224 TATTAATATATAATTA
1 TATTAAT-TATAATTA
24508240 TATCT-ATTATAATATA
1 TAT-TAATTATAAT-TA
24508256 TATTAATTAT
1 TATTAATTAT
24508266 TATCTACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 7 0.30
16 15 0.65
17 1 0.04
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:24508880 original size:25 final size:25
Alignment explanation
Indices: 24508820--24508880 Score: 63
Period size: 25 Copynumber: 2.4 Consensus size: 25
24508810 CTCTTAAATT
*
24508820 TTAATTTAATTATCTAATTTTTCAA
1 TTAATTAAATTATCTAATTTTTCAA
* *
24508845 TTTATTGAATTAT-TAATATTTT-ATA
1 TTAATTAAATTATCTAAT-TTTTCA-A
24508870 TTAATTAAATT
1 TTAATTAAATT
24508881 TTTGAGAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
24 5 0.17
25 25 0.83
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (25 bp):
TTAATTAAATTATCTAATTTTTCAA
Found at i:24510780 original size:43 final size:43
Alignment explanation
Indices: 24510716--24510808 Score: 150
Period size: 43 Copynumber: 2.2 Consensus size: 43
24510706 CAATACCGCT
*
24510716 AAACGCCGCTAAAGATCATGACCTTTAGCGACACTTCTACCAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGACACTTCTACAAC
* *
24510759 AAACGCCGCTAAAGATGATGACCTTTAGCGACGCTTCTACAAC
1 AAACGCCGCTAAAGATCATGACCTTTAGCGACACTTCTACAAC
*
24510802 CAACGCC
1 AAACGCC
24510809 ACAATAAAGA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.19
Consensus pattern (43 bp):
AAACGCCGCTAAAGATCATGACCTTTAGCGACACTTCTACAAC
Found at i:24514906 original size:21 final size:21
Alignment explanation
Indices: 24514850--24514911 Score: 69
Period size: 17 Copynumber: 3.1 Consensus size: 21
24514840 CACATACACC
24514850 AATGCATACAAAATAAAAACTT
1 AATGC-TACAAAATAAAAACTT
* *
24514872 AACGCTAC---A-GAAAACTT
1 AATGCTACAAAATAAAAACTT
24514889 AATGCTACAAAATAAAAACTT
1 AATGCTACAAAATAAAAACTT
24514910 AA
1 AA
24514912 GCTTCCAATA
Statistics
Matches: 32, Mismatches: 4, Indels: 9
0.71 0.09 0.20
Matches are distributed among these distances:
17 14 0.44
18 1 0.03
20 1 0.03
21 12 0.38
22 4 0.12
ACGTcount: A:0.56, C:0.16, G:0.06, T:0.21
Consensus pattern (21 bp):
AATGCTACAAAATAAAAACTT
Found at i:24517063 original size:7 final size:7
Alignment explanation
Indices: 24517053--24517164 Score: 50
Period size: 7 Copynumber: 15.7 Consensus size: 7
24517043 CCCCAGCCTT
24517053 TAAACCA
1 TAAACCA
24517060 TAAACCA
1 TAAACCA
*
24517067 AAAACCA
1 TAAACCA
** *
24517074 TAGCCCC
1 TAAACCA
24517081 TAAACCCA
1 TAAA-CCA
*
24517089 TAATCCA
1 TAAACCA
*
24517096 TAAACCT
1 TAAACCA
24517103 TAAA--A
1 TAAACCA
*
24517108 TAGTAACTCC
1 TA--AAC-CA
*
24517118 TAAACCT
1 TAAACCA
24517125 TAAACTC-
1 TAAAC-CA
24517132 TAAACCA
1 TAAACCA
* *
24517139 TATACCC
1 TAAACCA
24517146 TAAACCA
1 TAAACCA
* *
24517153 AAAACCT
1 TAAACCA
24517160 TAAAC
1 TAAAC
24517165 TATGGGATAA
Statistics
Matches: 76, Mismatches: 21, Indels: 16
0.67 0.19 0.14
Matches are distributed among these distances:
5 2 0.03
6 1 0.01
7 62 0.82
8 9 0.12
10 2 0.03
ACGTcount: A:0.48, C:0.30, G:0.02, T:0.20
Consensus pattern (7 bp):
TAAACCA
Found at i:24518857 original size:102 final size:102
Alignment explanation
Indices: 24518712--24518903 Score: 276
Period size: 102 Copynumber: 1.9 Consensus size: 102
24518702 AGAAATCAGT
* * * * * *
24518712 ACTTAGCAACCCCTTTCACATTTAAGATAAGGTGGGACCAGCACTTAGCAACCACCAATGATTCG
1 ACTTAGCAACCCCCTTCACATTTAAAATAAGATGGAACCAGCACTTAACAACCACCAATGAATCG
24518777 AGGAACCAGCACTTAGCAACCCCTTGGGGGAATCAAC
66 AGGAACCAGCACTTAGCAACCCCTTGGGGGAATCAAC
** * *
24518814 ACTTAGCAACCCCCTTCACATTTAAAATACTATGGAATCAGCACTTAATAACCACCAATGAATCG
1 ACTTAGCAACCCCCTTCACATTTAAAATAAGATGGAACCAGCACTTAACAACCACCAATGAATCG
* *
24518879 GGGAATCAGCACTTAGCAACCCCTT
66 AGGAACCAGCACTTAGCAACCCCTT
24518904 TATATTCAAT
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
102 78 1.00
ACGTcount: A:0.34, C:0.29, G:0.16, T:0.21
Consensus pattern (102 bp):
ACTTAGCAACCCCCTTCACATTTAAAATAAGATGGAACCAGCACTTAACAACCACCAATGAATCG
AGGAACCAGCACTTAGCAACCCCTTGGGGGAATCAAC
Found at i:24526275 original size:42 final size:43
Alignment explanation
Indices: 24526175--24526278 Score: 138
Period size: 43 Copynumber: 2.4 Consensus size: 43
24526165 AGTGATTCGG
* *
24526175 GGAATCGGTACTTAGCAACCCCTTTCACATTCAAAAATACGGT
1 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATACGGT
* * *
24526218 GGAATCAGCATTTAGCAACCCCTTTCACATT-TAAGATACGGT
1 GGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATACGGT
**
24526260 GGGCTCAGCACTTAGCAAC
1 GGAATCAGCACTTAGCAAC
24526279 TACCAATGAT
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
42 25 0.47
43 28 0.53
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
GGAATCAGCACTTAGCAACCCCTTTCACATTCAAAAATACGGT
Found at i:24526348 original size:75 final size:75
Alignment explanation
Indices: 24526218--24526397 Score: 218
Period size: 75 Copynumber: 2.4 Consensus size: 75
24526208 AAAATACGGT
* * * * ** * *
24526218 GGAATCAGCATTTAGCAACCCCTTTCACATTTAAGATACGGTGGGCTCAGCACTTAGCAACTACC
1 GGAATCAGCACTTAGCAACCCCCTTCATATTTAAAATACGGTGGAATCAGAACTTAGCAACCACC
*
24526283 AATGATTCAG
66 AATGAATCAG
* **
24526293 GGAATCATCACTTAGCAACCCCCTTCATATTTAAAATATTGTGGAATCAGAACTTAGCAACCACC
1 GGAATCAGCACTTAGCAACCCCCTTCATATTTAAAATACGGTGGAATCAGAACTTAGCAACCACC
*
24526358 AATGAATCGG
66 AATGAATCAG
* *
24526368 GGAATCAGCACTTAGTAA-CCCCTTTATATT
1 GGAATCAGCACTTAGCAACCCCCTTCATATT
24526398 CAATGTACTT
Statistics
Matches: 89, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
74 11 0.12
75 78 0.88
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (75 bp):
GGAATCAGCACTTAGCAACCCCCTTCATATTTAAAATACGGTGGAATCAGAACTTAGCAACCACC
AATGAATCAG
Found at i:24527705 original size:40 final size:41
Alignment explanation
Indices: 24527651--24527764 Score: 151
Period size: 41 Copynumber: 2.8 Consensus size: 41
24527641 TTTGCGGCGC
24527651 TTTTCAAAACACGCCGCTAAAGCCCTGAGCATTAGC-ACGCT
1 TTTTCAAAA-ACGCCGCTAAAGCCCTGAGCATTAGCGACGCT
**
24527692 TTTTCAAAAACGCCGCTAAAGACCC-GAGCATTAGCGGTGCT
1 TTTTCAAAAACGCCGCTAAAG-CCCTGAGCATTAGCGACGCT
* * *
24527733 TCTTAAAAAACGCCGCTAAAACCCTGAGCATT
1 TTTTCAAAAACGCCGCTAAAGCCCTGAGCATT
24527765 TGTGGCGCTT
Statistics
Matches: 65, Mismatches: 5, Indels: 6
0.86 0.07 0.08
Matches are distributed among these distances:
40 25 0.38
41 40 0.62
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.22
Consensus pattern (41 bp):
TTTTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGACGCT
Found at i:24527752 original size:41 final size:41
Alignment explanation
Indices: 24527648--24527764 Score: 143
Period size: 40 Copynumber: 2.9 Consensus size: 41
24527638 TTTTTTGCGG
*
24527648 CGCTT-TTCAAAACACGCCGCTAAAG-CCCTGAGCATTAGCA
1 CGCTTCTT-AAAAAACGCCGCTAAAGACCCTGAGCATTAGCA
* * *
24527688 CGCTTTTTCAAAAACGCCGCTAAAGACCC-GAGCATTAGCGG
1 CGCTTCTTAAAAAACGCCGCTAAAGACCCTGAGCATTAGC-A
*
24527729 TGCTTCTTAAAAAACGCCGCTAAA-ACCCTGAGCATT
1 CGCTTCTTAAAAAACGCCGCTAAAGACCCTGAGCATT
24527765 TGTGGCGCTT
Statistics
Matches: 67, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
40 34 0.51
41 33 0.49
ACGTcount: A:0.31, C:0.30, G:0.18, T:0.21
Consensus pattern (41 bp):
CGCTTCTTAAAAAACGCCGCTAAAGACCCTGAGCATTAGCA
Found at i:24527790 original size:41 final size:40
Alignment explanation
Indices: 24527646--24527792 Score: 140
Period size: 41 Copynumber: 3.6 Consensus size: 40
24527636 TTTTTTTTGC
* *
24527646 GGCGCTTTTCA-AAACACGCCGCTAAAGCCCTGAGCATTAG
1 GGCGCTTTT-ATAAAAACGCCGCTAAAACCCTGAGCATTAG
**
24527686 CACGCTTTT-TCAAAAACGCCGCTAAAGACCC-GAGCATTAG
1 GGCGCTTTTAT-AAAAACGCCGCTAAA-ACCCTGAGCATTAG
* *
24527726 CGGTGCTTCTTA-AAAAACGCCGCTAAAACCCTGAGCATTTG
1 -GGCGCTT-TTATAAAAACGCCGCTAAAACCCTGAGCATTAG
* *
24527767 TGGCGCTTTTATAAAAGCACCGCTAA
1 -GGCGCTTTTATAAAAACGCCGCTAA
24527793 TGATTGATTT
Statistics
Matches: 87, Mismatches: 12, Indels: 15
0.76 0.11 0.13
Matches are distributed among these distances:
40 37 0.43
41 48 0.55
42 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.22
Consensus pattern (40 bp):
GGCGCTTTTATAAAAACGCCGCTAAAACCCTGAGCATTAG
Found at i:24530597 original size:20 final size:20
Alignment explanation
Indices: 24530572--24530614 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
24530562 TCTACGCTAC
*
24530572 TGGCAGTTTACCTGCATTAT
1 TGGCAGCTTACCTGCATTAT
**
24530592 TGGCAGCTTGTCTGCATTAT
1 TGGCAGCTTACCTGCATTAT
24530612 TGG
1 TGG
24530615 TTGCTTGTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.16, C:0.19, G:0.26, T:0.40
Consensus pattern (20 bp):
TGGCAGCTTACCTGCATTAT
Found at i:24532379 original size:42 final size:42
Alignment explanation
Indices: 24532332--24532457 Score: 148
Period size: 42 Copynumber: 3.0 Consensus size: 42
24532322 AGGAGCATAA
* *
24532332 TCACTTAAACTCGTTTGGGGAGCTTCACTGATACACAGCTTG
1 TCACTTAAGCTCATTTGGGGAGCTTCACTGATACACAGCTTG
* * *
24532374 TCACTTAAGCTCATATT-GAGAGCTTCATTGATACACAGCTTT
1 TCACTTAAGCTCAT-TTGGGGAGCTTCACTGATACACAGCTTG
** * *
24532416 TCACTTAAGCTCACATGGGGAGCTTCGCCGATACACAG-TTG
1 TCACTTAAGCTCATTTGGGGAGCTTCACTGATACACAGCTTG
24532457 T
1 T
24532458 AAAACTGTTT
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
41 4 0.06
42 64 0.91
43 2 0.03
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (42 bp):
TCACTTAAGCTCATTTGGGGAGCTTCACTGATACACAGCTTG
Found at i:24533542 original size:17 final size:16
Alignment explanation
Indices: 24533509--24533540 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
24533499 AACTTTAGGG
24533509 GCAAAAATGTAATTTT
1 GCAAAAATGTAATTTT
*
24533525 GCAAAAATGTGATTTT
1 GCAAAAATGTAATTTT
24533541 TGGATTGGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.38
Consensus pattern (16 bp):
GCAAAAATGTAATTTT
Found at i:24533769 original size:50 final size:51
Alignment explanation
Indices: 24533694--24533879 Score: 193
Period size: 50 Copynumber: 3.7 Consensus size: 51
24533684 GTGAAGTTGC
*
24533694 TAGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGAATG-A
1 TAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGAATGAA
* * * * **
24533744 TAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTAC-CGAATAGCT
1 TAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGAAT-GAA
* * * * *
24533795 TCGATCACGTGTGTAGTACTATG-GTAGGCTATTACGTGTA-TCGG-ATGAA
1 TAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACT-GGAATGAA
*
24533844 AATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 TA-GGTCACATGTGTAGTACTATGTGCAGGCTACTA
24533880 TGTGAATCGG
Statistics
Matches: 107, Mismatches: 23, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
49 5 0.05
50 73 0.68
51 29 0.27
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (51 bp):
TAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGAATGAA
Found at i:24533873 original size:101 final size:101
Alignment explanation
Indices: 24533698--24533881 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 101
24533688 AGTTGCTAGG
* *
24533698 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGAATGATAGGTCGCATGTGTAGTAC
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGAATGAAAGGTCACATGTGTAGTAC
24533763 TATGTGCAGGCTACTATGCGTACCGAATAGCTTCGA
66 TATGTGCAGGCTACTATGCGTACCGAATAGCTTCGA
* *
24533799 TCACGTGTGTAGTACTATG-GTAGGCTATTACGTGTA-TCGG-ATGAAAATGGTCACATGTGTAG
1 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACT-GGAATG-AAA-GGTCACATGTGTAG
24533861 TACTATGTGCAGGCTACTATG
63 TACTATGTGCAGGCTACTATG
24533882 TGAATCGGGT
Statistics
Matches: 76, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
99 4 0.05
100 19 0.25
101 53 0.70
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (101 bp):
TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACTGGAATGAAAGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCGAATAGCTTCGA
Found at i:24536409 original size:27 final size:27
Alignment explanation
Indices: 24536343--24536424 Score: 67
Period size: 27 Copynumber: 3.0 Consensus size: 27
24536333 ATTGGAGAAA
* * *
24536343 CCTAGTTCGTCAAACATACTGGCGAAC
1 CCTAGATCGCCAAACAGACTGGCGAAC
* *
24536370 ACTAGATCACCAAACAGACTGGC-ACAC
1 CCTAGATCGCCAAACAGACTGGCGA-AC
* ** *
24536397 CCTAGCTCGCCAAATGGACTGGGGAAC
1 CCTAGATCGCCAAACAGACTGGCGAAC
24536424 C
1 C
24536425 TTCCTCCCAG
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
26 1 0.02
27 40 0.95
28 1 0.02
ACGTcount: A:0.32, C:0.32, G:0.21, T:0.16
Consensus pattern (27 bp):
CCTAGATCGCCAAACAGACTGGCGAAC
Found at i:24537730 original size:20 final size:20
Alignment explanation
Indices: 24537705--24537744 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
24537695 ATATATTTTT
*
24537705 ATAATTTTTATAATTTTTAA
1 ATAATTTTAATAATTTTTAA
*
24537725 ATAATTTTAATGATTTTTAA
1 ATAATTTTAATAATTTTTAA
24537745 TTTTTTAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (20 bp):
ATAATTTTAATAATTTTTAA
Found at i:24537742 original size:10 final size:10
Alignment explanation
Indices: 24537694--24537745 Score: 56
Period size: 9 Copynumber: 5.3 Consensus size: 10
24537684 AATATTAAAA
24537694 AATATATTTTT
1 AATA-ATTTTT
24537705 -ATAATTTTT
1 AATAATTTTT
24537714 -ATAATTTTT
1 AATAATTTTT
24537723 AAATAA-TTTT
1 -AATAATTTTT
*
24537733 AATGATTTTT
1 AATAATTTTT
24537743 AAT
1 AAT
24537746 TTTTTAAAAT
Statistics
Matches: 37, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
9 19 0.51
10 14 0.38
11 4 0.11
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (10 bp):
AATAATTTTT
Found at i:24541450 original size:465 final size:465
Alignment explanation
Indices: 24540579--24541509 Score: 1808
Period size: 465 Copynumber: 2.0 Consensus size: 465
24540569 GATAATTTGG
24540579 CTACGACCGAGAATGAACCAACAATATTGGATTATTGACCCGAGTCTCAAAATGGCTTTAGGTGA
1 CTACGACCGAGAATGAACCAACAATATTGGATTATTGACCCGAGTCTCAAAATGGCTTTAGGTGA
*
24540644 TTTACAGTTTAAAGAAAATAACAAAGGGCCTTGACCCACTATCAAAAGTGATAGGAACCAAAGAT
66 TTTACAGTTTAAAGAAAACAACAAAGGGCCTTGACCCACTATCAAAAGTGATAGGAACCAAAGAT
24540709 ATATGAACGCCACACCAAAAGGTGATAAGTTCGGTTTAAACAAAAGAAAGAATGACACCACAAGA
131 ATATGAACGCCACACCAAAAGGTGATAAGTTCGGTTTAAACAAAAGAAAGAATGACACCACAAGA
24540774 AAACTTGATAAGTCAATTCAATCTCGAAAGAACAAGGAGAATTGGAAATTTCACAAGTTGCAAAT
196 AAACTTGATAAGTCAATTCAATCTCGAAAGAACAAGGAGAATTGGAAATTTCACAAGTTGCAAAT
24540839 TTAGCATAAATTCAGGAAAAGTTTTTTTTTACAATGAGCTGATTACAAGTATTTATAGTGCTAGA
261 TTAGCATAAATTCAGGAAAAGTTTTTTTTTACAATGAGCTGATTACAAGTATTTATAGTGCTAGA
24540904 TGAGGCCTAGCCGAATAGTCACTTTTGTTCAGCTTAATGAGCTAATAATGAGCTAAAATTAACTT
326 TGAGGCCTAGCCGAATAGTCACTTTTGTTCAGCTTAATGAGCTAATAATGAGCTAAAATTAACTT
*
24540969 AGTCATTAAGCACAAACTCTTAAAATCTCTAGGCCAAAGTATTAGCAACTATCAATATGATTTAA
391 AGTCACTAAGCACAAACTCTTAAAATCTCTAGGCCAAAGTATTAGCAACTATCAATATGATTTAA
24541034 TGTTCCAATT
456 TGTTCCAATT
*
24541044 CTACGACCGAGAATGAACCAACAATATTGGATTGTTGACCCGAGTCTCAAAATGGCTTTAGGTGA
1 CTACGACCGAGAATGAACCAACAATATTGGATTATTGACCCGAGTCTCAAAATGGCTTTAGGTGA
*
24541109 TTTACAGTTTAAAGAAAACAACAAAGGGCCTTGACCCACTATCAAAAGTGATAGGAGCCAAAGAT
66 TTTACAGTTTAAAGAAAACAACAAAGGGCCTTGACCCACTATCAAAAGTGATAGGAACCAAAGAT
24541174 ATATGAACGCCACACCAAAAGGTGATAAGTTCGGTTTAAACAAAAGAAAGAATGACACCACAAGA
131 ATATGAACGCCACACCAAAAGGTGATAAGTTCGGTTTAAACAAAAGAAAGAATGACACCACAAGA
24541239 AAACTTGATAAGTCAATTCAATCTCGAAAGAACAAGGAGAATTGGAAATTTCACAAGTTGCAAAT
196 AAACTTGATAAGTCAATTCAATCTCGAAAGAACAAGGAGAATTGGAAATTTCACAAGTTGCAAAT
*
24541304 TTAGCATAAATTCAGGAAAATTTTTTTTTTACAATGAGCTGATTACAAGTATTTATAGTGCTAGA
261 TTAGCATAAATTCAGGAAAAGTTTTTTTTTACAATGAGCTGATTACAAGTATTTATAGTGCTAGA
24541369 TGAGGCCTAGCCGAATAGTCACTTTTGTTCAGCTTAATGAGCTAATAATGAGCTAAAATTAACTT
326 TGAGGCCTAGCCGAATAGTCACTTTTGTTCAGCTTAATGAGCTAATAATGAGCTAAAATTAACTT
*
24541434 AGTCACTAAGCACAAACTCTTGAAATCTCTAGGCCAAAGTATTAGCAACTATCAATATGATTTAA
391 AGTCACTAAGCACAAACTCTTAAAATCTCTAGGCCAAAGTATTAGCAACTATCAATATGATTTAA
24541499 TGTTCCAATT
456 TGTTCCAATT
24541509 C
1 C
24541510 AGCTGATTTA
Statistics
Matches: 460, Mismatches: 6, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
465 460 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.27
Consensus pattern (465 bp):
CTACGACCGAGAATGAACCAACAATATTGGATTATTGACCCGAGTCTCAAAATGGCTTTAGGTGA
TTTACAGTTTAAAGAAAACAACAAAGGGCCTTGACCCACTATCAAAAGTGATAGGAACCAAAGAT
ATATGAACGCCACACCAAAAGGTGATAAGTTCGGTTTAAACAAAAGAAAGAATGACACCACAAGA
AAACTTGATAAGTCAATTCAATCTCGAAAGAACAAGGAGAATTGGAAATTTCACAAGTTGCAAAT
TTAGCATAAATTCAGGAAAAGTTTTTTTTTACAATGAGCTGATTACAAGTATTTATAGTGCTAGA
TGAGGCCTAGCCGAATAGTCACTTTTGTTCAGCTTAATGAGCTAATAATGAGCTAAAATTAACTT
AGTCACTAAGCACAAACTCTTAAAATCTCTAGGCCAAAGTATTAGCAACTATCAATATGATTTAA
TGTTCCAATT
Found at i:24541894 original size:19 final size:19
Alignment explanation
Indices: 24541867--24541905 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
24541857 TTATTCCAAC
24541867 AACTAAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
*
24541886 AACTTAATTAACTAAGATG
1 AACTAAATTAACTAAGATG
24541905 A
1 A
24541906 GTAATTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.51, C:0.10, G:0.10, T:0.28
Consensus pattern (19 bp):
AACTAAATTAACTAAGATG
Found at i:24549428 original size:14 final size:14
Alignment explanation
Indices: 24549409--24549436 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
24549399 TAAAGTTATA
24549409 TTTAATAATTCATT
1 TTTAATAATTCATT
24549423 TTTAATAATTCATT
1 TTTAATAATTCATT
24549437 AATAAATTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.00, T:0.57
Consensus pattern (14 bp):
TTTAATAATTCATT
Found at i:24557422 original size:23 final size:23
Alignment explanation
Indices: 24557394--24557437 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
24557384 ACTTTCTTAC
*
24557394 GTAGTAATTTTTGGGGTATTATA
1 GTAGTAATTTTTGGGATATTATA
*
24557417 GTAGTAATTTTTTGGATATTA
1 GTAGTAATTTTTGGGATATTA
24557438 CAGGCTATCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (23 bp):
GTAGTAATTTTTGGGATATTATA
Found at i:24573990 original size:29 final size:29
Alignment explanation
Indices: 24573948--24574004 Score: 114
Period size: 29 Copynumber: 2.0 Consensus size: 29
24573938 TTCTTCTACC
24573948 TTAGTCATCCCTAACCCCCTCTCCCACTT
1 TTAGTCATCCCTAACCCCCTCTCCCACTT
24573977 TTAGTCATCCCTAACCCCCTCTCCCACT
1 TTAGTCATCCCTAACCCCCTCTCCCACT
24574005 CTTCATCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.18, C:0.49, G:0.04, T:0.30
Consensus pattern (29 bp):
TTAGTCATCCCTAACCCCCTCTCCCACTT
Found at i:24579811 original size:26 final size:26
Alignment explanation
Indices: 24579760--24579811 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
24579750 CATCTCTAGT
*
24579760 CAAGGCATTCAAATAGAAAAATCTAA
1 CAAGGCATTCAAATAGAAAAAGCTAA
* *
24579786 CAAGGCATTCAAATAGACATAGCTAA
1 CAAGGCATTCAAATAGAAAAAGCTAA
24579812 GGTGGAAATC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.50, C:0.17, G:0.13, T:0.19
Consensus pattern (26 bp):
CAAGGCATTCAAATAGAAAAAGCTAA
Found at i:24590979 original size:21 final size:21
Alignment explanation
Indices: 24590953--24591002 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
24590943 ATTGTTGGGA
* *
24590953 AGGAAGTTATTGTTGCAGAAG
1 AGGAAGTTATTGCTGAAGAAG
*
24590974 AGGAAGTTGTTGCTGAAGAAG
1 AGGAAGTTATTGCTGAAGAAG
*
24590995 AAGAAGTT
1 AGGAAGTT
24591003 GCTAAAAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.36, C:0.04, G:0.34, T:0.26
Consensus pattern (21 bp):
AGGAAGTTATTGCTGAAGAAG
Found at i:24590983 original size:18 final size:18
Alignment explanation
Indices: 24590962--24590997 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
24590952 AAGGAAGTTA
*
24590962 TTGTTGCAGAAGAGGAAG
1 TTGTTGCAGAAGAAGAAG
*
24590980 TTGTTGCTGAAGAAGAAG
1 TTGTTGCAGAAGAAGAAG
24590998 AAGTTGCTAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.06, G:0.36, T:0.25
Consensus pattern (18 bp):
TTGTTGCAGAAGAAGAAG
Found at i:24602895 original size:27 final size:27
Alignment explanation
Indices: 24602865--24603020 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
24602855 TGCTATTCAC
* *
24602865 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
24602892 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
24602919 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
24602947 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
24602974 TCCTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
24603001 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
24603021 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:24602936 original size:55 final size:55
Alignment explanation
Indices: 24602870--24603021 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
24602860 TTCACTCAAC
* * *
24602870 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTACAT
* ** * * *
24602925 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCCTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTACAT
* *
24602979 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
24603022 GTACAATTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.50
55 40 0.50
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTACAT
Found at i:24611004 original size:27 final size:27
Alignment explanation
Indices: 24610974--24611129 Score: 145
Period size: 27 Copynumber: 5.7 Consensus size: 27
24610964 TGCTATTCAC
* *
24610974 TCAACTCGCACACTTAGTGCCACGTAA
1 TCAATTCGCACACTTAGTGCCACATAA
* * * *
24611001 TCAAATCGCACCCTTAGTGCTACATAG
1 TCAATTCGCACACTTAGTGCCACATAA
* * **
24611028 TTAGATTCGCACACTTAGTGCCGCATGG
1 TCA-ATTCGCACACTTAGTGCCACATAA
*
24611056 TCAATTCGCACACTTAGTG-CATCATAT
1 TCAATTCGCACACTTAGTGCCA-CATAA
** *
24611083 TCCTTTCGCACACTTAGTGCAACATAA
1 TCAATTCGCACACTTAGTGCCACATAA
24611110 TCGAA-TCGCACACTTAGTGC
1 TC-AATTCGCACACTTAGTGC
24611130 TGTACAATTT
Statistics
Matches: 104, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
26 1 0.01
27 81 0.78
28 22 0.21
ACGTcount: A:0.28, C:0.29, G:0.16, T:0.28
Consensus pattern (27 bp):
TCAATTCGCACACTTAGTGCCACATAA
Found at i:24611045 original size:55 final size:55
Alignment explanation
Indices: 24610979--24611130 Score: 182
Period size: 54 Copynumber: 2.8 Consensus size: 55
24610969 TTCACTCAAC
* * *
24610979 TCGCACACTTAGTGCCACGTAATCAAATCGCACCCTTAGTGCTA-CATAGTTAGAT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATA-TTACAT
* ** * * *
24611034 TCGCACACTTAGTGCCGCATGGTCAATTCGCACACTTAGTGC-ATCATATTCCTT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTACAT
* *
24611088 TCGCACACTTAGTGCAACATAATCGAATCGCACACTTAGTGCT
1 TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCT
24611131 GTACAATTTA
Statistics
Matches: 80, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 40 0.50
55 40 0.50
ACGTcount: A:0.27, C:0.28, G:0.16, T:0.28
Consensus pattern (55 bp):
TCGCACACTTAGTGCCACATAATCAAATCGCACACTTAGTGCTATCATATTACAT
Found at i:24614342 original size:25 final size:25
Alignment explanation
Indices: 24614308--24614376 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
24614298 TGTACATATA
*
24614308 TGCTCACACGAGTTGTGAATAAGTC
1 TGCTCACACGAGCTGTGAATAAGTC
*
24614333 TGCTCACACGAGCTGTGAATAAGTG
1 TGCTCACACGAGCTGTGAATAAGTC
* *
24614358 TGCTCACACAAGCTATGAA
1 TGCTCACACGAGCTGTGAA
24614377 AATGGGCCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.30, C:0.22, G:0.23, T:0.25
Consensus pattern (25 bp):
TGCTCACACGAGCTGTGAATAAGTC
Found at i:24619522 original size:35 final size:35
Alignment explanation
Indices: 24619471--24619537 Score: 89
Period size: 35 Copynumber: 1.9 Consensus size: 35
24619461 ACAATCAGTA
24619471 TACAGAAACAGAATCAGTCTAGGCCTGAGCCCTTT
1 TACAGAAACAGAATCAGTCTAGGCCTGAGCCCTTT
* * * * *
24619506 TACAGTAACAGTATCAGTGTGGGCCTTAGCCC
1 TACAGAAACAGAATCAGTCTAGGCCTGAGCCC
24619538 AATACGATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 27 1.00
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.24
Consensus pattern (35 bp):
TACAGAAACAGAATCAGTCTAGGCCTGAGCCCTTT
Found at i:24622073 original size:27 final size:27
Alignment explanation
Indices: 24621994--24622193 Score: 174
Period size: 27 Copynumber: 7.4 Consensus size: 27
24621984 AGGGGCATTA
* * *
24621994 CGGTCATTTTACCCTAC-AGGGGTAATT
1 CGGTAATTTTACCCTTCGA-GGGTATTT
* * **
24622021 CGGTCATTTTA-CCTATCAAGAATATTT
1 CGGTAATTTTACCCT-TCGAGGGTATTT
*
24622048 CGGTCATTTTA-CCTATCGAGGGTATTT
1 CGGTAATTTTACCCT-TCGAGGGTATTT
** * *
24622075 CAATAATTTTACCCTTTGAGGGTATAT
1 CGGTAATTTTACCCTTCGAGGGTATTT
* *
24622102 CGATAATTTTACCCTTTGAGGGTATTT
1 CGGTAATTTTACCCTTCGAGGGTATTT
* *
24622129 CGATAATTTCACCCTTCGAGGGTATTT
1 CGGTAATTTTACCCTTCGAGGGTATTT
* *
24622156 TGGTAATTTTACCCTTTGAGGGTATTTT
1 CGGTAATTTTACCCTTCGAGGGTA-TTT
24622184 C-GTAATTTTA
1 CGGTAATTTTA
24622194 TCTTATAAGG
Statistics
Matches: 148, Mismatches: 21, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
26 3 0.02
27 138 0.93
28 7 0.05
ACGTcount: A:0.23, C:0.17, G:0.18, T:0.41
Consensus pattern (27 bp):
CGGTAATTTTACCCTTCGAGGGTATTT
Found at i:24622148 original size:81 final size:81
Alignment explanation
Indices: 24622063--24622211 Score: 212
Period size: 81 Copynumber: 1.8 Consensus size: 81
24622053 ATTTTACCTA
*
24622063 TCGAGGGTATTTCAATAATTTTACCCTTTGAGGGTA-TATCGATAATTTTACCCTT-TGAGGGTA
1 TCGAGGGTATTTCAATAATTTTACCCTTTGAGGGTATTATCG-TAATTTTA-CCTTATAAGGGTA
24622126 TTTCGATAATTTCACCCT
64 TTTCGATAATTTCACCCT
*** * *
24622144 TCGAGGGTATTTTGGTAATTTTACCCTTTGAGGGTATTTTCGTAATTTTATCTTATAAGGGTATT
1 TCGAGGGTATTTCAATAATTTTACCCTTTGAGGGTATTATCGTAATTTTACCTTATAAGGGTATT
24622209 TCG
66 TCG
24622212 GTCATTCTAA
Statistics
Matches: 60, Mismatches: 6, Indels: 4
0.86 0.09 0.06
Matches are distributed among these distances:
80 3 0.05
81 53 0.88
82 4 0.07
ACGTcount: A:0.23, C:0.14, G:0.19, T:0.44
Consensus pattern (81 bp):
TCGAGGGTATTTCAATAATTTTACCCTTTGAGGGTATTATCGTAATTTTACCTTATAAGGGTATT
TCGATAATTTCACCCT
Found at i:24622204 original size:27 final size:27
Alignment explanation
Indices: 24622078--24622209 Score: 135
Period size: 27 Copynumber: 4.9 Consensus size: 27
24622068 GGTATTTCAA
* *
24622078 TAATTTTACCCTTTGAGGGTA-TATCG
1 TAATTTTACCCTTTAAGGGTATTTTCG
*
24622104 ATAATTTTACCCTTTGAGGGTA-TTTCG
1 -TAATTTTACCCTTTAAGGGTATTTTCG
* ** *
24622131 ATAATTTCACCCTTCGAGGGTATTTTGG
1 -TAATTTTACCCTTTAAGGGTATTTTCG
*
24622159 TAATTTTACCCTTTGAGGGTATTTTCG
1 TAATTTTACCCTTTAAGGGTATTTTCG
*
24622186 TAATTTTA-TCTTATAAGGGTATTT
1 TAATTTTACCCTT-TAAGGGTATTT
24622210 CGGTCATTCT
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.03
27 87 0.93
28 4 0.04
ACGTcount: A:0.23, C:0.14, G:0.18, T:0.45
Consensus pattern (27 bp):
TAATTTTACCCTTTAAGGGTATTTTCG
Found at i:24623738 original size:25 final size:25
Alignment explanation
Indices: 24623697--24623750 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
24623687 TGAACCTTTG
24623697 ACCTCCTTACCAAACCTGTGAT-GCC
1 ACCTCCTTACCAAACCTGTG-TCGCC
* *
24623722 ACCTCCTTGCCACACCTGTGTCGCC
1 ACCTCCTTACCAAACCTGTGTCGCC
24623747 ACCT
1 ACCT
24623751 TTCCACTACA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 1 0.04
25 25 0.96
ACGTcount: A:0.19, C:0.44, G:0.13, T:0.24
Consensus pattern (25 bp):
ACCTCCTTACCAAACCTGTGTCGCC
Found at i:24626821 original size:40 final size:40
Alignment explanation
Indices: 24626765--24626945 Score: 265
Period size: 40 Copynumber: 4.5 Consensus size: 40
24626755 AATTATAGAA
24626765 TGAATGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
1 TGAATGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* *
24626805 TGAATGCACATGCGTGCCCCTGTTTGTACTTCGGTACCCC
1 TGAATGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* * * *
24626845 TGAATGCACATATGTGCCCTTGTTTGTACTTCAGTACCCC
1 TGAATGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
*
24626885 T-AACTGCACATACGTGCCCCTATTTGTACTTTGGTACCCC
1 TGAA-TGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* *
24626925 TGAATGCACTTCCGTGCCCCT
1 TGAATGCACATACGTGCCCCT
24626946 GTTTATCTCC
Statistics
Matches: 126, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
39 2 0.02
40 122 0.97
41 2 0.02
ACGTcount: A:0.18, C:0.32, G:0.18, T:0.31
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
Done.