Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 82 of 170
Found at i:25135328 original size:149 final size:149
Alignment explanation
Indices: 25135057--25135366 Score: 358
Period size: 149 Copynumber: 2.1 Consensus size: 149
25135047 ACCATCAATA
* * * *
25135057 ATGAAAATGGATGGTGACGACCATCAATAATGAAAAGGTATGGTGACGACTATCGAAATATGAAA
1 ATGAAAATGGATGGTGACGACCATCAACAATGAAAAGGGATGGTGACAACCATCGAAATATGAAA
* * * * *
25135122 AAAGATAGCTTCGGCTATTGAAATATGGAAACGGATAGCTTCAGCTATCGAAATATGAAAAGGTA
66 AAAGATAGCTTCGACTATAGAAATATGAAAACGGATAGCTACAGCTATCGAAATATGAAAAGGGA
*
25135187 TTGCTTCGGCTATCGAATT
131 TAGCTTCGGCTATCGAATT
*
25135206 ATGAACAA-GGATGGTGACGACCATCAACAATGAAAAGGGATGGTGACAACCATCGAATTATGAA
1 ATGAA-AATGGATGGTGACGACCATCAACAATGAAAAGGGATGGTGACAACCATCGAAATATGAA
*** * * * * *
25135270 ATGGGATAGCTTTGACTATCAGATA-ATGAAAAGGGAT-GGTGAC-GACTATCGAATTATGAAAA
65 AAAAGATAGCTTCGACTAT-AGAAATATGAAAACGGATAGCT-ACAG-CTATCGAAATATGAAAA
*
25135332 GGGATAGCTTCGGCTATCGAACT
127 GGGATAGCTTCGGCTATCGAATT
* *
25135355 AGGAAAAGGGAT
1 ATGAAAATGGAT
25135367 AGTTACTACC
Statistics
Matches: 135, Mismatches: 21, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
148 5 0.04
149 125 0.93
150 5 0.04
ACGTcount: A:0.38, C:0.13, G:0.25, T:0.23
Consensus pattern (149 bp):
ATGAAAATGGATGGTGACGACCATCAACAATGAAAAGGGATGGTGACAACCATCGAAATATGAAA
AAAGATAGCTTCGACTATAGAAATATGAAAACGGATAGCTACAGCTATCGAAATATGAAAAGGGA
TAGCTTCGGCTATCGAATT
Found at i:25135349 original size:30 final size:30
Alignment explanation
Indices: 25134969--25135368 Score: 187
Period size: 30 Copynumber: 13.5 Consensus size: 30
25134959 TCATCGACCA
* *
25134969 ATGAAAAGGGATAGCTTCGTCTATTGAATT
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
* * **
25134999 ATGAAAAAGGATAGCTTTGGTTATCG-ATT
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
* * * * * *
25135028 AGGAAAACGGAT-GGTGACGACCATC-AATA
1 ATGAAAAGGGATAGCT-TCGACTATCGAATT
* * * * *
25135057 ATGAAAATGGAT-GGTGACGACCATC-AATA
1 ATGAAAAGGGATAGCT-TCGACTATCGAATT
* * * *
25135086 ATGAAAAGGTAT-GGTGACGACTATCGAAAT
1 ATGAAAAGGGATAGCT-TCGACTATCGAATT
** * * *
25135116 ATGAAAAAAGATAGCTTCGGCTATTGAAAT
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
* * *
25135146 ATGGAAACGGATAGCTTC-AGCTATCGAAAT
1 ATGAAAAGGGATAGCTTCGA-CTATCGAATT
* * *
25135176 ATGAAAAGGTATTGCTTCGGCTATCGAATT
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
* * * **
25135206 ATGAACAA-GGAT-GGTGACGACCATC-AACA
1 ATGAA-AAGGGATAGCT-TCGACTATCGAATT
* * * *
25135235 ATGAAAAGGGAT-GGTGACAACCATCGAATT
1 ATGAAAAGGGATAGCT-TCGACTATCGAATT
* * *
25135265 ATGAAATGGGATAGCTTTGACTATC-AGATA
1 ATGAAAAGGGATAGCTTCGACTATCGA-ATT
* *
25135295 ATGAAAAGGGAT-GGTGACGACTATCGAATT
1 ATGAAAAGGGATAGCT-TCGACTATCGAATT
* *
25135325 ATGAAAAGGGATAGCTTCGGCTATCGAACT
1 ATGAAAAGGGATAGCTTCGACTATCGAATT
*
25135355 AGGAAAAGGGATAG
1 ATGAAAAGGGATAG
25135369 TTACTACCAT
Statistics
Matches: 289, Mismatches: 66, Indels: 30
0.75 0.17 0.08
Matches are distributed among these distances:
28 4 0.01
29 96 0.33
30 180 0.62
31 9 0.03
ACGTcount: A:0.38, C:0.12, G:0.26, T:0.24
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTTCGACTATCGAATT
Found at i:25144440 original size:112 final size:111
Alignment explanation
Indices: 25144307--25144532 Score: 416
Period size: 112 Copynumber: 2.0 Consensus size: 111
25144297 CTTGAATGGT
*
25144307 CTAATTACCATTTAAGTATCTTTTCTTTTATTCAATTAACCATTTAACCACTAAAATCAAATAGT
1 CTAATTACCATTTAAGTATCTTTTCCTTTATTCAATTAACCATTTAACCACTAAAATCAAATAGT
25144372 GATCAAATTTTACATATTTTACGATTTAGTCCTTTTTAATTCATTAA
66 GATCAAATTTTACATATTTTACGATTTAGTCC-TTTTAATTCATTAA
*
25144419 CTAATTACCATTTAAGTATCTTTTCCTTTATTCAATTAACCATTTAACCACTGAAATCAAATAGT
1 CTAATTACCATTTAAGTATCTTTTCCTTTATTCAATTAACCATTTAACCACTAAAATCAAATAGT
*
25144484 GATCAAATTTTACATCTTTTACGATTTAGTCCTTTTAATTCATTAA
66 GATCAAATTTTACATATTTTACGATTTAGTCCTTTTAATTCATTAA
25144530 CTA
1 CTA
25144533 TGGAAACGTT
Statistics
Matches: 111, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
111 17 0.15
112 94 0.85
ACGTcount: A:0.34, C:0.17, G:0.05, T:0.44
Consensus pattern (111 bp):
CTAATTACCATTTAAGTATCTTTTCCTTTATTCAATTAACCATTTAACCACTAAAATCAAATAGT
GATCAAATTTTACATATTTTACGATTTAGTCCTTTTAATTCATTAA
Found at i:25147475 original size:244 final size:246
Alignment explanation
Indices: 25147035--25147518 Score: 636
Period size: 244 Copynumber: 2.0 Consensus size: 246
25147025 AACATAATAT
* * * *
25147035 TAGTACAATATATATTGCATATTATTATATATTATTGTTTATCATTATATTAGTTGAATTATGCT
1 TAGTACAATATATATTACATATTATTATATATTAATGTTTATCATTATACTAGTTGAAATATGCT
* * * * *
25147100 CTAAGTCCCTATACTTTTCTTACATTTGAAAGTTAGCATTTCTGATGTATTATGTAATGATATAT
66 CTAAGTCCCTATACTTTTCGTACATTTGAAAGTTA-CATTCCTGATATATTATATAATGATATAC
* * * *
25147165 CATATCAAATAATATATTATTAATTTATATATATGCATTAATGATTAAACATTAAAATACCATGT
130 CATATCAAATAATATATTAATAATTTATATATATGCATCAATGATTAAAAATTAAAATAACATGT
* *
25147230 AATACTATATATTTTGTTGTAATGTATATTAT-A-AAAATTATATGTAGTAG
195 AACACTATATATTTTGTTATAATGTATATTATAATAAAATTATATGTAGTAG
* * * * *
25147280 TAGTACATTATATATTACTTATTTTTATATATTAAT-TTTATTATTGTACTAGTTGAAATATGCT
1 TAGTACAATATATATTACATATTATTATATATTAATGTTTATCATTATACTAGTTGAAATATGCT
* * * *
25147344 TTAAGTCCTTATATTTTTCGTACATTTGAAAGTTA-ATCCTCCT-ACTATATTATATAATGCTAT
66 CTAAGTCCCTATACTTTTCGTACATTTGAAAGTTACAT--TCCTGA-TATATTATATAATGATAT
* * *
25147407 ACCATATCATATAATATATTAATAGTTTATATATATGCATCAATGATTAAAAATTATAATAACAT
128 ACCATATCAAATAATATATTAATAATTTATATATATGCATCAATGATTAAAAATTAAAATAACAT
* *
25147472 GTAACACTATATATTTTGTTATAATTTATATTGTAATAAAATTATAT
193 GTAACACTATATATTTTGTTATAATGTATATTATAATAAAATTATAT
25147519 AGATTATGTT
Statistics
Matches: 205, Mismatches: 29, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
242 2 0.01
243 1 0.00
244 160 0.78
245 32 0.16
246 10 0.05
ACGTcount: A:0.37, C:0.09, G:0.08, T:0.46
Consensus pattern (246 bp):
TAGTACAATATATATTACATATTATTATATATTAATGTTTATCATTATACTAGTTGAAATATGCT
CTAAGTCCCTATACTTTTCGTACATTTGAAAGTTACATTCCTGATATATTATATAATGATATACC
ATATCAAATAATATATTAATAATTTATATATATGCATCAATGATTAAAAATTAAAATAACATGTA
ACACTATATATTTTGTTATAATGTATATTATAATAAAATTATATGTAGTAG
Found at i:25147710 original size:16 final size:17
Alignment explanation
Indices: 25147689--25147721 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
25147679 ATAATTATAG
25147689 TATTAAA-AATATTTTA
1 TATTAAATAATATTTTA
25147705 TATTAAATTAATATTTT
1 TATTAAA-TAATATTTT
25147722 TAAAATATTA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
TATTAAATAATATTTTA
Found at i:25151230 original size:40 final size:39
Alignment explanation
Indices: 25151100--25151328 Score: 165
Period size: 41 Copynumber: 5.7 Consensus size: 39
25151090 CACTTAATTA
* * *
25151100 TACCCCTAAATTACACTTACATGCCCCTGTTTGTACTTC-G
1 TACCCCTGAATTGCACTTACGTG-CCCTG-TTGTACTTCAG
* ** * * *
25151140 ATACCCTTGAATTATAGTTATGTGCTCCTGTTTATACTTCAG
1 -TACCCCTGAATTGCACTTACGTGC-CCTG-TTGTACTTCAG
* * *
25151182 TACTCCTGAACTGCACTTACGTGCCCTTGTTGCACTTCAG
1 TACCCCTGAATTGCACTTACGTGCCC-TGTTGTACTTCAG
* * * *
25151222 TACCCCTGAATTGCACTTATGTACCCCTATTGTACTT-TG
1 TACCCCTGAATTGCACTTACGT-GCCCTGTTGTACTTCAG
* **
25151261 ATACCCCTGAATTGCTCTTACGTGCCACTGTTTGTACTTTGG
1 -TACCCCTGAATTGCACTTACGTGCC-CTG-TTGTACTTCAG
* *
25151303 TAACCCTGAATTGCACATACGTGCCC
1 TACCCCTGAATTGCACTTACGTGCCC
25151329 CTATTTACAC
Statistics
Matches: 149, Mismatches: 31, Indels: 17
0.76 0.16 0.09
Matches are distributed among these distances:
39 3 0.02
40 62 0.42
41 82 0.55
42 2 0.01
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.36
Consensus pattern (39 bp):
TACCCCTGAATTGCACTTACGTGCCCTGTTGTACTTCAG
Found at i:25151237 original size:21 final size:20
Alignment explanation
Indices: 25151175--25151280 Score: 76
Period size: 21 Copynumber: 5.2 Consensus size: 20
25151165 TCCTGTTTAT
* *
25151175 ACTTCAGTACTCCTGAACTGC
1 ACTT-AGTACCCCTGAATTGC
* *
25151196 ACTTACGTGCCCTTG--TTGC
1 ACTTA-GTACCCCTGAATTGC
25151215 ACTTCAGTACCCCTGAATTGC
1 ACTT-AGTACCCCTGAATTGC
*
25151236 ACTTATGTACCCCT--ATTGT
1 ACTTA-GTACCCCTGAATTGC
*
25151255 ACTTTGATACCCCTGAATTGC
1 ACTTAG-TACCCCTGAATTGC
*
25151276 TCTTA
1 ACTTA
25151281 CGTGCCACTG
Statistics
Matches: 66, Mismatches: 11, Indels: 16
0.71 0.12 0.17
Matches are distributed among these distances:
18 1 0.02
19 29 0.44
20 3 0.05
21 33 0.50
ACGTcount: A:0.21, C:0.30, G:0.14, T:0.35
Consensus pattern (20 bp):
ACTTAGTACCCCTGAATTGC
Found at i:25157544 original size:47 final size:47
Alignment explanation
Indices: 25157475--25157569 Score: 172
Period size: 47 Copynumber: 2.0 Consensus size: 47
25157465 GGTTTTCAAT
*
25157475 GGTTGAATACGTTGATTTCTATTGTGCCAAGAGAGCGGATCACCTGG
1 GGTTGAATACATTGATTTCTATTGTGCCAAGAGAGCGGATCACCTGG
*
25157522 GGTTGAATACATTGATTTCTATTGTGCCAAGAGAGCGGATCACTTGG
1 GGTTGAATACATTGATTTCTATTGTGCCAAGAGAGCGGATCACCTGG
25157569 G
1 G
25157570 AATTCTTTCA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.24, C:0.16, G:0.29, T:0.31
Consensus pattern (47 bp):
GGTTGAATACATTGATTTCTATTGTGCCAAGAGAGCGGATCACCTGG
Found at i:25162467 original size:25 final size:25
Alignment explanation
Indices: 25162422--25162493 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
25162412 TAGGCCTATT
* * *
25162422 TTCACAACTCGTGTGAA-CATACTGA
1 TTCACAGCTCATGT-AAGCATACCGA
*
25162447 TTTACAGCTCATGTAAGCATACCGA
1 TTCACAGCTCATGTAAGCATACCGA
*
25162472 TTCACAGCTCGTGTAAGCATAC
1 TTCACAGCTCATGTAAGCATAC
25162494 ATGTACAGGA
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
24 2 0.05
25 38 0.95
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.28
Consensus pattern (25 bp):
TTCACAGCTCATGTAAGCATACCGA
Found at i:25166277 original size:199 final size:199
Alignment explanation
Indices: 25165926--25166293 Score: 619
Period size: 199 Copynumber: 1.8 Consensus size: 199
25165916 TTCTAAAGTG
* *
25165926 TTTCTAAAGTCTCGAGGGCTTGATGAAGGGACGATCTGCATGTATATGAATGGATTATACTATGT
1 TTTCTAAAGTCTCGAGGGCTCGATAAAGGGACGATCTGCATGTATATGAATGGATTATACTATGT
* *
25165991 TTATATCAATGTTTGGAAATGCATGTTTTCATGTTATGATTTTACGATAATGCTTTGTAACCCTA
66 TTATATCAATGTTTGGAAATGCATGTTTTCATGTTACGATTTTACGATAATGCTTCGTAACCCTA
*
25166056 TTCCGGCGACAGATATAGGTTAGGGGTGTTATAGAAACATAGTCATGTGACTCAAACATTTGGGA
131 TTCCGGCGACAGATACAGGTTAGGGGTGTTATAGAAACATAGTCATGTGACTCAAACATTTGGGA
25166121 CACA
196 CACA
* * * *
25166125 TTTCTAAGGTCTCGAGGGCTCGATAAAGGGATGATCTGCATGTATATGAATGGATTATGCTTTGT
1 TTTCTAAAGTCTCGAGGGCTCGATAAAGGGACGATCTGCATGTATATGAATGGATTATACTATGT
* *
25166190 TTATATCAATGTTTGGAAATGTATGTTTTTATGTTACGATTTTACGATAATGCTTCGTAACCCTA
66 TTATATCAATGTTTGGAAATGCATGTTTTCATGTTACGATTTTACGATAATGCTTCGTAACCCTA
* *
25166255 TTCTGGCGACGGATACAGGTTAGGGGTGTTATAGAAACA
131 TTCCGGCGACAGATACAGGTTAGGGGTGTTATAGAAACA
25166294 CGATTGTGTG
Statistics
Matches: 156, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
199 156 1.00
ACGTcount: A:0.28, C:0.13, G:0.23, T:0.36
Consensus pattern (199 bp):
TTTCTAAAGTCTCGAGGGCTCGATAAAGGGACGATCTGCATGTATATGAATGGATTATACTATGT
TTATATCAATGTTTGGAAATGCATGTTTTCATGTTACGATTTTACGATAATGCTTCGTAACCCTA
TTCCGGCGACAGATACAGGTTAGGGGTGTTATAGAAACATAGTCATGTGACTCAAACATTTGGGA
CACA
Found at i:25167082 original size:13 final size:13
Alignment explanation
Indices: 25167064--25167092 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
25167054 CCAACTATGT
25167064 TTTATTCCGTTCA
1 TTTATTCCGTTCA
25167077 TTTATTCCGTTCA
1 TTTATTCCGTTCA
25167090 TTT
1 TTT
25167093 CAACCATAGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.14, C:0.21, G:0.07, T:0.59
Consensus pattern (13 bp):
TTTATTCCGTTCA
Found at i:25169330 original size:50 final size:50
Alignment explanation
Indices: 25169247--25169424 Score: 198
Period size: 51 Copynumber: 3.5 Consensus size: 50
25169237 GATGGCCACG
* * *
25169247 TGTGTAGTACTATGTGCAGGCTACCACATGTACCAGAATGATAGGTCGCA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCACA
* * * * * * *
25169297 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATTGCTTTGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATG-ATAGGTCACA
*
25169348 TGTGTAGTACTATGTGCAGGCTACTACGTGTATC-GAAT-AGTGATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGA-T-A-GGTCACA
*
25169399 TGTGTAGTACTATGTGTAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
25169425 TGTGAACCGG
Statistics
Matches: 105, Mismatches: 19, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
49 1 0.01
50 38 0.36
51 66 0.63
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCACA
Found at i:25169361 original size:101 final size:102
Alignment explanation
Indices: 25169243--25169426 Score: 284
Period size: 101 Copynumber: 1.8 Consensus size: 102
25169233 AAGTGATGGC
*
25169243 CACGTGTGTAGTACTATGTGCAGGCTACCACATGTACC-AGA-A-TGATAGGTCGCATGTGTAGT
1 CACGTGTGTAGTACTATGTGCAGGCTACCACATGTACCGA-ATAGTGAT-GGTCACATGTGTAGT
25169305 ACTATGTGCAGGCTACTATGCGTACCAGATTGCTTTGAT
64 ACTATGTGCAGGCTACTATGCGTACCAGATTGCTTTGAT
* * *
25169344 CACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGAATAGTGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTATGTGCAGGCTACCACATGTACCGAATAGTGATGGTCACATGTGTAGTAC
*
25169409 TATGTGTAGGCTACTATG
66 TATGTGCAGGCTACTATG
25169427 TGAACCGGTA
Statistics
Matches: 75, Mismatches: 5, Indels: 5
0.88 0.06 0.06
Matches are distributed among these distances:
101 36 0.48
102 35 0.47
103 4 0.05
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (102 bp):
CACGTGTGTAGTACTATGTGCAGGCTACCACATGTACCGAATAGTGATGGTCACATGTGTAGTAC
TATGTGCAGGCTACTATGCGTACCAGATTGCTTTGAT
Found at i:25170358 original size:20 final size:20
Alignment explanation
Indices: 25170333--25170370 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
25170323 ATCTAAATTG
25170333 AGCTTAAACGAGCTGATTTA
1 AGCTTAAACGAGCTGATTTA
**
25170353 AGCTTAAGTGAGCTGATT
1 AGCTTAAACGAGCTGATT
25170371 GGAGATGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.32, C:0.13, G:0.24, T:0.32
Consensus pattern (20 bp):
AGCTTAAACGAGCTGATTTA
Found at i:25171606 original size:17 final size:18
Alignment explanation
Indices: 25171586--25171632 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
25171576 TTCTTTTGAT
25171586 TTTTCTTCA-TTTC-TTTC
1 TTTT-TTCATTTTCTTTTC
25171603 -TTTTTCATTTTCTTTTC
1 TTTTTTCATTTTCTTTTC
25171620 -TTTTTCATTTTCT
1 TTTTTTCATTTTCT
25171633 CTTAGTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
15 4 0.14
16 7 0.25
17 17 0.61
ACGTcount: A:0.06, C:0.19, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTCATTTTCTTTTC
Found at i:25173869 original size:8 final size:8
Alignment explanation
Indices: 25173856--25173884 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
25173846 TTTTAAATGA
25173856 TATTTTAT
1 TATTTTAT
25173864 TATTTTAT
1 TATTTTAT
25173872 TATTTTAT
1 TATTTTAT
25173880 TATTT
1 TATTT
25173885 AGTATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:25175997 original size:51 final size:51
Alignment explanation
Indices: 25175873--25176008 Score: 186
Period size: 50 Copynumber: 2.7 Consensus size: 51
25175863 AGTGAAAGTG
** * *
25175873 ATGGTCATGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCGGAATGAT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGAT
* * *
25175924 A-GGTCGCATGTGTAGTACTATGTGCAGGCTACTACGTGTATCAG-ATGGT
1 ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGAT
25175973 AATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 -ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
25176009 TGTGAACCGA
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
49 4 0.05
50 38 0.51
51 33 0.44
ACGTcount: A:0.25, C:0.15, G:0.29, T:0.31
Consensus pattern (51 bp):
ATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGAT
Found at i:25176012 original size:26 final size:26
Alignment explanation
Indices: 25175931--25176012 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
25175921 GATAGGTCGC
25175931 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
* * *
25175957 ACGTGTA-T-CAGATG-GTAATGG-TCAC-
1 ATGTGTAGTAC-TATGTG-CA-GGCT-ACT
25175982 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
25176008 ATGTG
1 ATGTG
25176013 AACCGAACAT
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
24 2 0.05
25 16 0.39
26 21 0.51
27 2 0.05
ACGTcount: A:0.24, C:0.15, G:0.28, T:0.33
Consensus pattern (26 bp):
ATGTGTAGTACTATGTGCAGGCTACT
Found at i:25179251 original size:18 final size:18
Alignment explanation
Indices: 25179211--25179260 Score: 61
Period size: 17 Copynumber: 2.8 Consensus size: 18
25179201 AATACTTTAC
25179211 CTTTTTTTTAACTT-GAA
1 CTTTTTTTTAACTTCGAA
25179228 CTTTTTTTTAACTTCGTATA
1 CTTTTTTTTAACTTCG-A-A
25179248 -TTTTTTTT-ACTTC
1 CTTTTTTTTAACTTC
25179261 AAATATAACA
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
17 14 0.47
18 6 0.20
19 9 0.30
20 1 0.03
ACGTcount: A:0.18, C:0.14, G:0.04, T:0.64
Consensus pattern (18 bp):
CTTTTTTTTAACTTCGAA
Found at i:25181365 original size:50 final size:49
Alignment explanation
Indices: 25181247--25181386 Score: 131
Period size: 49 Copynumber: 2.9 Consensus size: 49
25181237 GGTGGAAGTA
* * * ** *
25181247 AGTGGCAGTTTATCTGCAAATAAATGGTGGCTTGTCCATGAAGTGTTTC
1 AGTGGTAGTTTATCTGCAAATAAGTGGTAGCTTGTCCACAAAGTATTTC
* * * * * *
25181296 AATGGTAGTATATCCGCAAATCAGTGGTAGCTTGTGCACAAATTATTATC
1 AGTGGTAGTTTATCTGCAAATAAGTGGTAGCTTGTCCACAAAGTATT-TC
*
25181346 AGTGGTAGTTTATCTGCAAATTAGTGGT-GTCTT-TCCACAAA
1 AGTGGTAGTTTATCTGCAAATAAGTGGTAG-CTTGTCCACAAA
25181387 TGATGATTTG
Statistics
Matches: 72, Mismatches: 17, Indels: 4
0.77 0.18 0.04
Matches are distributed among these distances:
49 43 0.60
50 29 0.40
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (49 bp):
AGTGGTAGTTTATCTGCAAATAAGTGGTAGCTTGTCCACAAAGTATTTC
Found at i:25183125 original size:9 final size:10
Alignment explanation
Indices: 25183109--25183134 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
25183099 TTAAGACTTG
25183109 GTTTTTTTAT
1 GTTTTTTTAT
25183119 GTTTTTTTAT
1 GTTTTTTTAT
25183129 GTTTTT
1 GTTTTT
25183135 CATACCTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.12, T:0.81
Consensus pattern (10 bp):
GTTTTTTTAT
Found at i:25192249 original size:23 final size:23
Alignment explanation
Indices: 25192218--25192269 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 23
25192208 ACCTACTTTC
*
25192218 TTACTGTAGTAATTTTCAGGG-TA
1 TTACAGTAGTAATTTT-AGGGATA
*
25192241 TTACAGTAGTAATTTTTGGGATA
1 TTACAGTAGTAATTTTAGGGATA
25192264 TTACAG
1 TTACAG
25192270 GTCGAGAGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 3 0.12
23 23 0.88
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.42
Consensus pattern (23 bp):
TTACAGTAGTAATTTTAGGGATA
Found at i:25194390 original size:17 final size:18
Alignment explanation
Indices: 25194368--25194401 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
25194358 CAGAAATGTA
25194368 TTTGGGGTTAGA-AGTTT
1 TTTGGGGTTAGACAGTTT
*
25194385 TTTGGGTTTAGACAGTT
1 TTTGGGGTTAGACAGTT
25194402 ATTACAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.18, C:0.03, G:0.32, T:0.47
Consensus pattern (18 bp):
TTTGGGGTTAGACAGTTT
Found at i:25203237 original size:25 final size:25
Alignment explanation
Indices: 25203203--25203261 Score: 68
Period size: 25 Copynumber: 2.4 Consensus size: 25
25203193 CCTAAATTTC
*
25203203 AATTTAATTATCTAAT-TTTTCA-ATT
1 AATTAAATTAT-TAATATTTT-ATATT
*
25203228 TATTAAATTATTAATATTTTATATT
1 AATTAAATTATTAATATTTTATATT
25203253 AATTAAATT
1 AATTAAATT
25203262 TTTGTGAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 5 0.17
25 24 0.83
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (25 bp):
AATTAAATTATTAATATTTTATATT
Found at i:25211101 original size:15 final size:16
Alignment explanation
Indices: 25211081--25211110 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
25211071 AATTTTAAAG
25211081 TAGTG-AAATAATTAT
1 TAGTGAAAATAATTAT
25211096 TAGTGAAAATAATTA
1 TAGTGAAAATAATTA
25211111 ATTTGGCTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.37
Consensus pattern (16 bp):
TAGTGAAAATAATTAT
Found at i:25217398 original size:47 final size:47
Alignment explanation
Indices: 25217266--25218155 Score: 1366
Period size: 47 Copynumber: 18.6 Consensus size: 47
25217256 TATTTGAATA
*
25217266 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAAGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
25217315 AATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
25217364 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
25217411 AATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
25217458 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
25217507 AATGTGAAAGTGTATATATATGATAAGGCCTAATAGCCGATGTGATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
25217554 AATGTGAAAGTGTATATATGTGATAAAGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
25217601 AATGTGAAAGTGTATATATATGTTATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
25217650 AATGTGAAAGTGTATATATGTGATAAGGCCAGGCCGAATGTCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGAT-A----AGGCCTAATGGCCGATGTGATG
25217702 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
25217751 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
25217798 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
25217845 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
25217892 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
25217941 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
25217988 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
25218035 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
25218082 AATGTGAAAGTTTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
25218129 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
25218156 TCCCGAAGGG
Statistics
Matches: 781, Mismatches: 47, Indels: 28
0.91 0.05 0.03
Matches are distributed among these distances:
47 513 0.66
48 1 0.00
49 223 0.29
52 31 0.04
53 1 0.00
54 12 0.02
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:25217531 original size:143 final size:143
Alignment explanation
Indices: 25217266--25218155 Score: 1412
Period size: 143 Copynumber: 6.2 Consensus size: 143
25217256 TATTTGAATA
*
25217266 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGAA-GTGATGAATGTGAAAGTGTAT
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCC-AATGTGATGAATGTGAAAGTGTAT
*
25217330 ATATATGTGATAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
63 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
25217395 AATGGCCGATGTGATG
128 AATGGCCGATGTGATG
*
25217411 AATGTGAAGGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
25217476 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* *
25217541 AGCCGATGTGATA
131 GGCCGATGTGATG
*
25217554 AATGTGAAAGTGTATATATGTGATAAAGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
*
25217619 TATGTTATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCAGGC
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT-A----AGGC
* * *
25217684 CGAATGTCCAATGTGATG
126 CTAATGGCCGATGTGATG
* *
25217702 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TA
1 AATGTGAAAGTG--TATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
25217765 TATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
64 TATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTA
25217830 ATGGCCGATGTGATG
129 ATGGCCGATGTGATG
25217845 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
25217910 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
*
25217975 AGCCGATGTGATG
131 GGCCGATGTGATG
* *
25217988 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATA
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
* * * * * *
25218051 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTTTATATATGTGATAGGGCCGAGT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
* *
25218116 GGCCAACGTGATG
131 GGCCGATGTGATG
* *
25218129 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
25218156 TCCCGAAGGG
Statistics
Matches: 695, Mismatches: 40, Indels: 24
0.92 0.05 0.03
Matches are distributed among these distances:
141 143 0.21
142 2 0.00
143 407 0.59
144 1 0.00
145 11 0.02
147 1 0.00
148 86 0.12
150 44 0.06
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (143 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAAT
GGCCGATGTGATG
Found at i:25219009 original size:85 final size:85
Alignment explanation
Indices: 25218866--25219044 Score: 349
Period size: 85 Copynumber: 2.1 Consensus size: 85
25218856 GGCCGGCCAT
25218866 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
25218931 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
25218951 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
25219016 GTAAGGATTAATAAAATAAA
66 GTAAGGATTAATAAAATAAA
*
25219036 GGGCATGGG
1 GAGCATGGG
25219045 CAATAAAATA
Statistics
Matches: 93, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 93 1.00
ACGTcount: A:0.37, C:0.08, G:0.28, T:0.26
Consensus pattern (85 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
GTAAGGATTAATAAAATAAA
Found at i:25221287 original size:47 final size:47
Alignment explanation
Indices: 25221233--25221668 Score: 611
Period size: 47 Copynumber: 9.1 Consensus size: 47
25221223 TTAGGATTTT
*
25221233 ATGTGATGGATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
25221280 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
***
25221327 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA--C--ATGCGTATGTGTGATAAGGCCGAATGGCCA
* *
25221378 ATGTGATGAATGTCAACATGCGTGTGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
*** *
25221425 ATGTGATGAATGTGAACCTGTATATATATATGCGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-C-----ATGCGTATGTGTGATAAGGCCGAATGGCCA
25221478 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
25221525 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* * *
25221572 ATGTGATGAATGTGAACATGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
* ** * * *
25221619 ATTTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
25221666 ATG
1 ATG
25221669 CGAAACGTGT
Statistics
Matches: 351, Mismatches: 28, Indels: 20
0.88 0.07 0.05
Matches are distributed among these distances:
47 264 0.75
48 1 0.00
49 2 0.01
51 42 0.12
52 1 0.00
53 41 0.12
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAATGGCCA
Found at i:25221382 original size:24 final size:24
Alignment explanation
Indices: 25221354--25221429 Score: 59
Period size: 24 Copynumber: 3.2 Consensus size: 24
25221344 CCGTATATAT
25221354 ATGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
* * * **
25221378 A--TGTGATGAATGTCAACAT-GCGT
1 ATGTGTGAT-AAGGCCGA-ATGGCCA
*
25221401 GTGTGTGATAAGGCCGAATGGCCA
1 ATGTGTGATAAGGCCGAATGGCCA
25221425 ATGTG
1 ATGTG
25221430 ATGAATGTGA
Statistics
Matches: 35, Mismatches: 12, Indels: 10
0.61 0.21 0.18
Matches are distributed among these distances:
22 6 0.17
23 9 0.26
24 14 0.40
25 6 0.17
ACGTcount: A:0.28, C:0.14, G:0.33, T:0.25
Consensus pattern (24 bp):
ATGTGTGATAAGGCCGAATGGCCA
Found at i:25221384 original size:22 final size:22
Alignment explanation
Indices: 25221357--25221431 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
25221347 TATATATATG
25221357 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* * * ****
25221379 TGTGATGAATGTCAACATGCGTGTG
1 TGTGAT-AAGGCCGA-ATG-GCCAA
25221404 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
25221426 TGTGAT
1 TGTGAT
25221432 GAATGTGAAC
Statistics
Matches: 36, Mismatches: 14, Indels: 6
0.64 0.25 0.11
Matches are distributed among these distances:
22 13 0.36
23 8 0.22
24 8 0.22
25 7 0.19
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:25221505 original size:23 final size:23
Alignment explanation
Indices: 25221478--25221552 Score: 57
Period size: 23 Copynumber: 3.2 Consensus size: 23
25221468 CGAATGGCCA
25221478 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
* * **
25221501 ATGTG-TGATAAG-G-CCGAATGGCCA
1 ATGTGATGA-ATGTGAAC--AT-GCGT
25221525 ATGTGATGAATGTGAACATGCGT
1 ATGTGATGAATGTGAACATGCGT
25221548 ATGTG
1 ATGTG
25221553 TGATAAGGCC
Statistics
Matches: 37, Mismatches: 8, Indels: 14
0.63 0.14 0.24
Matches are distributed among these distances:
21 1 0.03
22 4 0.11
23 16 0.43
24 11 0.30
25 4 0.11
26 1 0.03
ACGTcount: A:0.29, C:0.11, G:0.32, T:0.28
Consensus pattern (23 bp):
ATGTGATGAATGTGAACATGCGT
Found at i:25221731 original size:46 final size:46
Alignment explanation
Indices: 25221642--25221732 Score: 119
Period size: 46 Copynumber: 2.0 Consensus size: 46
25221632 GAACATGAAT
* * * *
25221642 ATATGTGGTAAGGCCGAATGGCTAATGCGAAACGTGTATGAGATGG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
* * *
25221688 ATATGTGGTAAAGCCAAATGGCTAATGTGAGATATGTACGAGATG
1 ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATG
25221733 TGTATATATA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.33, C:0.10, G:0.32, T:0.25
Consensus pattern (46 bp):
ATATGTGGTAAAGCCAAATGGCTAATGCGAAACATGTACGAGATGG
Found at i:25221739 original size:141 final size:140
Alignment explanation
Indices: 25221244--25221717 Score: 524
Period size: 147 Copynumber: 3.3 Consensus size: 140
25221234 TGTGATGGAT
* * * * *
25221244 GTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGT
1 GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGA
**
25221309 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATG
66 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATG-A-ATATA--TGTGATAAGGCCGAATG
* *
25221374 GCCAATGTGATGAAT
127 GCCAATGCGA-GAAC
* * * * **
25221389 GTCAACATGCGTGTGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCTGTATATATAT
1 GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAA-C---ATGCATAT
* ** *
25221454 ATGCGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCGTATGTGTGATAAGGCCGAA
62 AT--GAGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAA
* *
25221519 TGGCCAATGTGATGAAT
125 TGGCCAATGCGA-GAAC
* *
25221536 GTGAACATGCGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATATGA
1 GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGA
* * *
25221601 GATAAGGCCGAATGGCCAATTTGATGAATGTGAACATGAATATATGTGGTAAGGCCGAATGGCTA
66 GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCA
25221666 ATGCGA-AAC
131 ATGCGAGAAC
* *
25221675 GTGTATGAGATG-GATATGTG-G-TAAAGCCAAATGGCTAATGTGA
1 GTG-A--ACATGCG-TATGTGTGATAAAGCCAAATGGCCAATGTGA
25221718 GATATGTACG
Statistics
Matches: 291, Mismatches: 28, Indels: 25
0.85 0.08 0.07
Matches are distributed among these distances:
139 5 0.02
140 20 0.07
141 67 0.23
142 10 0.03
143 8 0.03
145 50 0.17
146 2 0.01
147 82 0.28
149 9 0.03
151 38 0.13
ACGTcount: A:0.31, C:0.13, G:0.30, T:0.26
Consensus pattern (140 bp):
GTGAACATGCGTATGTGTGATAAAGCCAAATGGCCAATGTGATGAATGTGAACATGCATATATGA
GATAAGGCCGAATGGCCAATGTGATGAATGTGAACATGAATATATGTGATAAGGCCGAATGGCCA
ATGCGAGAAC
Found at i:25222061 original size:37 final size:37
Alignment explanation
Indices: 25221879--25222060 Score: 319
Period size: 37 Copynumber: 4.9 Consensus size: 37
25221869 GGAAATATAT
25221879 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
25221916 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
25221953 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* *
25221990 TCCGGGTAAGACCCGATGACTACGCGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * *
25222027 TCCGGGTAAGACCCGATAACTTCATGTGGAGATT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATT
25222061 TCGTCTGAGC
Statistics
Matches: 139, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 139 1.00
ACGTcount: A:0.24, C:0.20, G:0.31, T:0.25
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:25224845 original size:40 final size:40
Alignment explanation
Indices: 25224800--25224991 Score: 212
Period size: 40 Copynumber: 4.8 Consensus size: 40
25224790 ATAACCACAA
* * * *
25224800 GCACAATTGCCTTCGGGTCCTAACCCGGGTATAGAAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGAAACTC
**
25224840 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGAAACTC
*
25224880 GCACAAATGCCTTCGGGTCTTAGCCCGGATA-A-AATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGAA--ACTC
* * *
25224920 GCATAAATGCCTTCGGGACTTAGCCCGGATA-A-AATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGAA--ACTC
* *
25224960 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
25224992 CATTCAAATG
Statistics
Matches: 139, Mismatches: 10, Indels: 5
0.90 0.06 0.03
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 137 0.99
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGAAACTC
Found at i:25224884 original size:80 final size:79
Alignment explanation
Indices: 25224771--25224990 Score: 221
Period size: 80 Copynumber: 2.8 Consensus size: 79
25224761 ACCCAAGTTT
* * * * * * *
25224771 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCCTAACCCGGGTATAGA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCCTAACCC-GG-ATAAA
*
25224835 A-ACTCGCACAAATGC
64 ACACTAGCACAAATGC
* * * * *
25224850 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCCTAACCCGGATAAAA
*
25224914 TCACTAGCATAAATGC
65 -CACTAGCACAAATGC
* * * *
25224930 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCCTAACCCGGATA
25224991 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
78 5 0.04
79 14 0.12
80 94 0.80
81 4 0.03
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCCTAACCCGGATAAAAC
ACTAGCACAAATGC
Found at i:25229761 original size:29 final size:29
Alignment explanation
Indices: 25229719--25229819 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
25229709 CATGAAATTG
25229719 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
25229748 GCACTAAGTGTGCGGGTTCAAGTTGTATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
* * *
25229777 GCACTAAGTGTGCGAGTTC-GATTATATA
1 GCACTAAGTGTGCGGGTTCAAATTGTATA
*
25229805 ACACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
25229820 ACTTACTATA
Statistics
Matches: 65, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
28 19 0.29
29 46 0.71
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTCAAATTGTATA
Found at i:25236163 original size:40 final size:40
Alignment explanation
Indices: 25236119--25236310 Score: 208
Period size: 40 Copynumber: 4.8 Consensus size: 40
25236109 ATAACCACAA
* * * *
25236119 GCACAATTGCTTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
25236159 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
25236199 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
25236239 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * *
25236279 GCATAAATGCCTTCGGGACTTAGCCTGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
25236311 CATTCAAATG
Statistics
Matches: 140, Mismatches: 11, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 1 0.01
40 135 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:25239535 original size:50 final size:50
Alignment explanation
Indices: 25239393--25239587 Score: 135
Period size: 50 Copynumber: 3.9 Consensus size: 50
25239383 GATAATAACA
* * * ** * * *
25239393 TGCCAAAGCCATGTCCCAAACATGGTCTTACATGGGATGTTTCTTGTAC--
1 TGCCAACGCCATCTCCCAAACATGGTCTTACAGGGGACCTCTCATAT-CGG
* * * * * ** **
25239442 TGCCAATGCCATAT-CCAAGATATGGTCTTATATGGGAGTTCTCATATTTG
1 TGCCAACGCCATCTCCCAA-ACATGGTCTTACAGGGGACCTCTCATATCGG
* * * * * *
25239492 TGCCCACGCCATGTCCCAGACATTGTCTTACCGGGGACCTCTCATCTCGG
1 TGCCAACGCCATCTCCCAAACATGGTCTTACAGGGGACCTCTCATATCGG
*
25239542 TGCCAACGCCATCTCCCAAACATGGTCTTACATGGGACCTCTCATA
1 TGCCAACGCCATCTCCCAAACATGGTCTTACAGGGGACCTCTCATA
25239588 ATCTCAATGA
Statistics
Matches: 111, Mismatches: 31, Indels: 7
0.74 0.21 0.05
Matches are distributed among these distances:
48 4 0.04
49 33 0.30
50 71 0.64
51 3 0.03
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (50 bp):
TGCCAACGCCATCTCCCAAACATGGTCTTACAGGGGACCTCTCATATCGG
Found at i:25244384 original size:13 final size:13
Alignment explanation
Indices: 25244366--25244391 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
25244356 ATTCTAAGAG
25244366 GAAATAATTTCAA
1 GAAATAATTTCAA
25244379 GAAATAATTTCAA
1 GAAATAATTTCAA
25244392 TTTTTCGATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.08, G:0.08, T:0.31
Consensus pattern (13 bp):
GAAATAATTTCAA
Found at i:25245112 original size:3 final size:3
Alignment explanation
Indices: 25245099--25245148 Score: 66
Period size: 3 Copynumber: 16.7 Consensus size: 3
25245089 CTCTATGAGA
* *
25245099 TCT TTT TCT TCT TCT TCT TCT TCT TCT TCTT TCT TCT GCT TC- TCT
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TC-T TCT TCT TCT TCT TCT
25245144 TCT TC
1 TCT TC
25245149 GGGATCCTCA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
2 2 0.05
3 36 0.88
4 3 0.07
ACGTcount: A:0.00, C:0.32, G:0.02, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:25267228 original size:50 final size:50
Alignment explanation
Indices: 25267094--25267335 Score: 213
Period size: 50 Copynumber: 4.7 Consensus size: 50
25267084 GATAATAACA
* * * *
25267094 TGCCAAAGCCATGT-CCAAGACATGGTCTTACATGGGA-TGTTTCATGTAC--
1 TGCCAATGCCATGTCCCAA-ACATGGTCTTACATGGGACT-TCTAATCT-CGG
* * * * * *
25267143 TGCCAATGTCATATCCCAGATATGGTCTTACATGGGAGTTCTAATATCGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACTTCTAATCTCGG
* * * *
25267193 TGCCCATGCCATGTCTCAAACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACTTCTAATCTCGG
* * *
25267243 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
1 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGA-CT-TC-TAATCTC--GG
*
25267298 ATGCCAATGCCATATCCCAAACATGGTCTTACATGGGA
1 -TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGA
25267336 TCTTTTTACC
Statistics
Matches: 156, Mismatches: 27, Indels: 13
0.80 0.14 0.07
Matches are distributed among these distances:
48 1 0.01
49 33 0.21
50 77 0.49
51 1 0.01
52 2 0.01
53 6 0.04
55 2 0.01
56 34 0.22
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGACTTCTAATCTCGG
Found at i:25267276 original size:100 final size:103
Alignment explanation
Indices: 25267093--25267335 Score: 264
Period size: 99 Copynumber: 2.4 Consensus size: 103
25267083 TGATAATAAC
* ** * * * *
25267093 ATGCCAAAGCCATGTCCAAGACATGGTCTTACATGGGATGTTTCATGTACTGCCAATGTCATATC
1 ATGCCAATGCCATGTCCAA-ACATGGTCTTACATGGGACCTCTCATCTACTGCCAACGCCATATC
* *
25267158 CCAGATATGGTCTTACATGGGA-GT-TC-TAATATC-GG
65 CCAGACATGGTCTTACATGGGACCTCTCATAATATCAGG
* *
25267193 -TGCCCATGCCATGTCTCAAACATGGTCTTACATGGGACCTCTCATCT-CGGTGCCAACGCCATG
1 ATGCCAATGCCATGTC-CAAACATGGTCTTACATGGGACCTCTCATCTAC--TGCCAACGCCATA
* *
25267256 TCCCAGACATGGTCTTACATGGGACCTCTCATGATCTCAAGG
63 TCCCAGACATGGTCTTACATGGGACCTCTCATAATATC-AGG
*
25267298 ATGCCAATGCCATATCCCAAACATGGTCTTACATGGGA
1 ATGCCAATGCCATGT-CCAAACATGGTCTTACATGGGA
25267336 TCTTTTTACC
Statistics
Matches: 118, Mismatches: 15, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
98 1 0.01
99 37 0.31
100 36 0.31
101 1 0.01
102 2 0.02
103 5 0.04
105 2 0.02
106 33 0.28
107 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (103 bp):
ATGCCAATGCCATGTCCAAACATGGTCTTACATGGGACCTCTCATCTACTGCCAACGCCATATCC
CAGACATGGTCTTACATGGGACCTCTCATAATATCAGG
Found at i:25270200 original size:18 final size:18
Alignment explanation
Indices: 25270178--25270221 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
25270168 CTCTTTCTTT
*
25270178 CTCTTCTTCAACAACTTC
1 CTCTTCTGCAACAACTTC
* * *
25270196 TTCTTCAGCAACAATTTC
1 CTCTTCTGCAACAACTTC
25270214 CTCTTCTG
1 CTCTTCTG
25270222 TAGCAGCAGC
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.34, G:0.05, T:0.41
Consensus pattern (18 bp):
CTCTTCTGCAACAACTTC
Found at i:25281082 original size:25 final size:25
Alignment explanation
Indices: 25281053--25281172 Score: 134
Period size: 25 Copynumber: 4.8 Consensus size: 25
25281043 GCAAATACTC
* *
25281053 TATAGCTCGTGAGAGCATACTGATT
1 TATAGCTCGTAAGAGCATACCGATT
* *
25281078 TATAGCTCGTAAGACCATACCAATT
1 TATAGCTCGTAAGAGCATACCGATT
* *
25281103 TATAGCTCGTGAGAGCATACCGATC
1 TATAGCTCGTAAGAGCATACCGATT
*
25281128 TACAGCTCG-AATGAGCATACCGATT
1 TATAGCTCGTAA-GAGCATACCGATT
* * *
25281153 CACAGCTCGTACGAGCATAC
1 TATAGCTCGTAAGAGCATAC
25281173 ATTTGCATGA
Statistics
Matches: 80, Mismatches: 13, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
24 1 0.01
25 78 0.98
26 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (25 bp):
TATAGCTCGTAAGAGCATACCGATT
Found at i:25281847 original size:22 final size:22
Alignment explanation
Indices: 25281803--25281843 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
25281793 TATGTATATA
25281803 AGTAACCTTAAAATGGTTGATG
1 AGTAACCTTAAAATGGTTGATG
*
25281825 AGTAA-CTTAATATGGTTGA
1 AGTAACCTTAAAATGGTTGA
25281844 ATGATGGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.37, C:0.07, G:0.22, T:0.34
Consensus pattern (22 bp):
AGTAACCTTAAAATGGTTGATG
Found at i:25286397 original size:47 final size:47
Alignment explanation
Indices: 25286335--25286823 Score: 800
Period size: 47 Copynumber: 10.4 Consensus size: 47
25286325 TTCAGCCAAG
*
25286335 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
*
25286382 AAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
*
25286429 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
*
25286476 AAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
*
25286523 AAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
*
25286570 AAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
25286617 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
* *
25286664 AAGTGTATATATGT-AAAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
*
25286710 AAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
* * * * * * * *
25286757 AAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
* *
25286804 AAGTGCATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
25286824 TCCCGAAGGG
Statistics
Matches: 420, Mismatches: 21, Indels: 2
0.95 0.05 0.00
Matches are distributed among these distances:
46 44 0.10
47 376 0.90
ACGTcount: A:0.33, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGA
Found at i:25286996 original size:35 final size:37
Alignment explanation
Indices: 25286942--25287018 Score: 113
Period size: 35 Copynumber: 2.1 Consensus size: 37
25286932 CCGAGCTCTA
* *
25286942 AAGACCCGATGACTACGTGT-GA-ATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
25286977 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
25287014 AAGAC
1 AAGAC
25287019 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 18 0.49
36 2 0.05
37 17 0.46
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:25293982 original size:21 final size:22
Alignment explanation
Indices: 25293946--25293986 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
25293936 TATGTATATA
25293946 AGTAACCTTAAAATGGTTGACG
1 AGTAACCTTAAAATGGTTGACG
*
25293968 AGTAA-CTTAATATGGTTGA
1 AGTAACCTTAAAATGGTTGA
25293987 ATGATGGAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.37, C:0.10, G:0.22, T:0.32
Consensus pattern (22 bp):
AGTAACCTTAAAATGGTTGACG
Found at i:25297824 original size:28 final size:29
Alignment explanation
Indices: 25297792--25297890 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
25297782 ATAATAAGCC
*
25297792 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
25297820 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
25297848 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
25297877 CGCACACTTAGTGC
1 CGCACACTTAGTGC
25297891 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:25302471 original size:15 final size:15
Alignment explanation
Indices: 25302451--25302481 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
25302441 CTTTTTCCCT
25302451 AAATCTGTCCAACAC
1 AAATCTGTCCAACAC
*
25302466 AAATCTGTCCTACAC
1 AAATCTGTCCAACAC
25302481 A
1 A
25302482 TGTAGCACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.32, G:0.06, T:0.23
Consensus pattern (15 bp):
AAATCTGTCCAACAC
Found at i:25332973 original size:50 final size:51
Alignment explanation
Indices: 25332904--25333035 Score: 167
Period size: 50 Copynumber: 2.6 Consensus size: 51
25332894 ATCATTCGAT
* * * * ** *
25332904 ACACGTAGTAGCCTTCACATAGTACTACACACATGATCAAAA-TTTTTGGT
1 ACACATAGTAGCCTCCACATAGTACTACACACATGACCAAAACCTTTCAGC
* *
25332954 TCACATAGTAGCCTCCACATATTACTACACACATGACCAAAACCTTTCAGC
1 ACACATAGTAGCCTCCACATAGTACTACACACATGACCAAAACCTTTCAGC
*
25333005 ACACATAGTAGCCTGCACATAGTACTACACA
1 ACACATAGTAGCCTCCACATAGTACTACACA
25333036 TGTGGCCATT
Statistics
Matches: 69, Mismatches: 12, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
50 37 0.54
51 32 0.46
ACGTcount: A:0.36, C:0.28, G:0.11, T:0.25
Consensus pattern (51 bp):
ACACATAGTAGCCTCCACATAGTACTACACACATGACCAAAACCTTTCAGC
Found at i:25335041 original size:21 final size:20
Alignment explanation
Indices: 25335012--25335057 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
25335002 CGAAAGGCAA
25335012 TCAACCTAACA-TGAATTAAAT
1 TCAACCTAA-ATTG-ATTAAAT
*
25335033 TCAAGCTAAATTGATTAAAT
1 TCAACCTAAATTGATTAAAT
25335053 T-AACC
1 TCAACC
25335058 ATTCCAACAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.46, C:0.17, G:0.07, T:0.30
Consensus pattern (20 bp):
TCAACCTAAATTGATTAAAT
Found at i:25335662 original size:14 final size:14
Alignment explanation
Indices: 25335643--25335669 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25335633 CATTTCTTGT
25335643 TCGGTTCAGTTCAC
1 TCGGTTCAGTTCAC
25335657 TCGGTTCAGTTCA
1 TCGGTTCAGTTCA
25335670 ACTGGACCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.22, T:0.37
Consensus pattern (14 bp):
TCGGTTCAGTTCAC
Found at i:25339405 original size:13 final size:14
Alignment explanation
Indices: 25339377--25339416 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
25339367 ATAAAGCTGA
25339377 TAATAATTAATATAT
1 TAATAATT-ATATAT
*
25339392 ATTATAATTATATAT
1 -TAATAATTATATAT
25339407 TAATAATTAT
1 TAATAATTAT
25339417 CACCTTCTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
14 9 0.41
15 6 0.27
16 7 0.32
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (14 bp):
TAATAATTATATAT
Found at i:25348301 original size:42 final size:43
Alignment explanation
Indices: 25348230--25348358 Score: 136
Period size: 47 Copynumber: 2.9 Consensus size: 43
25348220 TTCTTAGGGT
* * * *
25348230 GCAAGTCAGTGAGTTACACAGCTTGGCACACGAGCATGT-GGA
1 GCAACTCAGTGAGTTACACTGCCTAGCACACGAGCATGTCGGA
* * *
25348272 GTAACTCAGTGAGTTACATTGCCTAGCACACGGGCATGTCACACGGA
1 GCAACTCAGTGAGTTACACTGCCTAGCACACGAGCATGT----CGGA
25348319 GCAACTCAGTGAGTTACACTGCCTAGCACAC-AGGCATGTC
1 GCAACTCAGTGAGTTACACTGCCTAGCACACGA-GCATGTC
25348359 ACACGGCCAT
Statistics
Matches: 71, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
42 32 0.45
43 1 0.01
47 38 0.54
ACGTcount: A:0.28, C:0.26, G:0.26, T:0.20
Consensus pattern (43 bp):
GCAACTCAGTGAGTTACACTGCCTAGCACACGAGCATGTCGGA
Found at i:25348343 original size:47 final size:47
Alignment explanation
Indices: 25348269--25348364 Score: 165
Period size: 47 Copynumber: 2.0 Consensus size: 47
25348259 ACGAGCATGT
* * *
25348269 GGAGTAACTCAGTGAGTTACATTGCCTAGCACACGGGCATGTCACAC
1 GGAGCAACTCAGTGAGTTACACTGCCTAGCACACAGGCATGTCACAC
25348316 GGAGCAACTCAGTGAGTTACACTGCCTAGCACACAGGCATGTCACAC
1 GGAGCAACTCAGTGAGTTACACTGCCTAGCACACAGGCATGTCACAC
25348363 GG
1 GG
25348365 CCATGTGTCC
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.28, C:0.27, G:0.26, T:0.19
Consensus pattern (47 bp):
GGAGCAACTCAGTGAGTTACACTGCCTAGCACACAGGCATGTCACAC
Found at i:25365587 original size:42 final size:42
Alignment explanation
Indices: 25365522--25365620 Score: 146
Period size: 42 Copynumber: 2.4 Consensus size: 42
25365512 GTGGATACTT
*
25365522 CACAGCTCATGTGAACAGCATCATGTAGCTTACA-TTCTGACC
1 CACAGCTCATGTGAGCAGCATCATGTAGCTTACATTTC-GACC
* *
25365564 CACAGCTCGTGTGAGCAGTATCATGTAGCTTACATTTCGACC
1 CACAGCTCATGTGAGCAGCATCATGTAGCTTACATTTCGACC
*
25365606 CACGGCTCATGTGAG
1 CACAGCTCATGTGAG
25365621 TAGGCCCATT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
42 48 0.94
43 3 0.06
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.26
Consensus pattern (42 bp):
CACAGCTCATGTGAGCAGCATCATGTAGCTTACATTTCGACC
Found at i:25375751 original size:269 final size:270
Alignment explanation
Indices: 25375255--25375782 Score: 986
Period size: 269 Copynumber: 2.0 Consensus size: 270
25375245 GCTAATATAT
* *
25375255 ATAAATAAACGAATTGCTTCCAAAATCTTTGTCAAGCATGATTTACAGATACATCCTCCCAGCAT
1 ATAAATAAACGAATTGCTTCCAAAAACTTTGTCAAGCATGATTTACAGATACATCCTCCAAGCAT
*
25375320 AATAATGCTCTAATACATTAACAAAAACAAACTTCACTAACTGGAAAAATTTAGCATGCTGGTTG
66 AATAATACTCTAATACATTAACAAAAACAAACTTCACTAACTGGAAAAATTTAGCATGCTGGTTG
25375385 TGTTCTACCTGTTTAAAATCCAATTCTCGAAAGTAAATTTTACTCTAGCATCCCCCAATGGTGCA
131 TGTTCTACCTGTTTAAAATCCAATTCTCGAAAGTAAATTTTACTCTAGCATCCCCCAATGGTGCA
*
25375450 TAAAACTGCCCTAAACATGCTAAGAGAAACAAATGCATGCAACCAAAGATTACAAGCAGAGTTGC
196 TAAAACTGCCCTAAACAAGCTAAGAGAAACAAATGCATGCAACCAAAGATTACAAGCAGAGTTGC
25375515 TTCCAAATAA
261 TTCCAAATAA
*
25375525 ATAAATAAATGAATTGCTTCCAAAAACTTTGTCAAGCATGATTTACAGATACATCCTCCAAGCAT
1 ATAAATAAACGAATTGCTTCCAAAAACTTTGTCAAGCATGATTTACAGATACATCCTCCAAGCAT
25375590 AATAATACTCTAATACATTAACAAAAACAAACTTCACTAACTGG-AAAATTTAGCATGCTGGTTG
66 AATAATACTCTAATACATTAACAAAAACAAACTTCACTAACTGGAAAAATTTAGCATGCTGGTTG
*
25375654 TGTTCTACCTGTTTAAAATCCAATTCTTGAAAGTAAATTTTACTCTAGCATCCCCCAATGGTGCA
131 TGTTCTACCTGTTTAAAATCCAATTCTCGAAAGTAAATTTTACTCTAGCATCCCCCAATGGTGCA
*
25375719 TAAAACTGCCTTAAACAAGCTAAGAGAAACAAATGCATGCAACCAAAGATTACAAGCAGAGTTG
196 TAAAACTGCCCTAAACAAGCTAAGAGAAACAAATGCATGCAACCAAAGATTACAAGCAGAGTTG
25375783 TCAAGGGCAC
Statistics
Matches: 251, Mismatches: 7, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
269 146 0.58
270 105 0.42
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (270 bp):
ATAAATAAACGAATTGCTTCCAAAAACTTTGTCAAGCATGATTTACAGATACATCCTCCAAGCAT
AATAATACTCTAATACATTAACAAAAACAAACTTCACTAACTGGAAAAATTTAGCATGCTGGTTG
TGTTCTACCTGTTTAAAATCCAATTCTCGAAAGTAAATTTTACTCTAGCATCCCCCAATGGTGCA
TAAAACTGCCCTAAACAAGCTAAGAGAAACAAATGCATGCAACCAAAGATTACAAGCAGAGTTGC
TTCCAAATAA
Found at i:25389813 original size:17 final size:18
Alignment explanation
Indices: 25389793--25389827 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
25389783 AAAATAATCC
*
25389793 AAGATAAAAAA-AATTTA
1 AAGAAAAAAAACAATTTA
25389810 AAGAAAAAAAACAATTTA
1 AAGAAAAAAAACAATTTA
25389828 CCTCAGTCCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.71, C:0.03, G:0.06, T:0.20
Consensus pattern (18 bp):
AAGAAAAAAAACAATTTA
Found at i:25391876 original size:22 final size:22
Alignment explanation
Indices: 25391848--25391891 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
25391838 TGGTGGGTCC
25391848 ATTGAATTAAGTACAATTTGAG
1 ATTGAATTAAGTACAATTTGAG
*
25391870 ATTGAATTAAGTATAATTTGAG
1 ATTGAATTAAGTACAATTTGAG
25391892 TACCTAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.41, C:0.02, G:0.18, T:0.39
Consensus pattern (22 bp):
ATTGAATTAAGTACAATTTGAG
Found at i:25394675 original size:16 final size:16
Alignment explanation
Indices: 25394654--25394685 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
25394644 GTTTTGTTGC
*
25394654 TAATTTTACTTTTTCA
1 TAATTTCACTTTTTCA
25394670 TAATTTCACTTTTTCA
1 TAATTTCACTTTTTCA
25394686 CTTTCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.25, C:0.16, G:0.00, T:0.59
Consensus pattern (16 bp):
TAATTTCACTTTTTCA
Found at i:25394971 original size:51 final size:51
Alignment explanation
Indices: 25394909--25395053 Score: 186
Period size: 51 Copynumber: 2.8 Consensus size: 51
25394899 GATACCGGTT
* **
25394909 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATTTGATA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATA
* * * *
25394960 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCGA--AGCTATCCGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTATCCGATA
*
25395011 CGCATAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACT
25395054 TTCACTTTCA
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
50 3 0.04
51 73 0.92
52 3 0.04
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (51 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTATCCGATA
Found at i:25395068 original size:51 final size:50
Alignment explanation
Indices: 25394909--25395079 Score: 161
Period size: 51 Copynumber: 3.4 Consensus size: 50
25394899 GATACCGGTT
* *
25394909 CACATAGTAGCCTGCACATAGTACTACACATGTGACCATCACTATTTGA-TA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCAC--TTTCACTA
* * * *
25394960 CACGTAGTAGCCTTCACATAGTACTACACACGTGATCGA--AGCTATC-CGGTA
1 CACATAGTAGCCTGCACATAGTACTACACACGTGA-CCATCA-CTTTCAC--TA
* *
25395011 CGCATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTTTCACTTT
1 CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTTTCAC-TA
* *
25395062 CACATAGTGGCCTACACA
1 CACATAGTAGCCTGCACA
25395080 CAGTTCATGC
Statistics
Matches: 96, Mismatches: 16, Indels: 16
0.75 0.12 0.12
Matches are distributed among these distances:
49 2 0.02
50 3 0.03
51 87 0.91
52 4 0.04
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (50 bp):
CACATAGTAGCCTGCACATAGTACTACACACGTGACCATCACTTTCACTA
Found at i:25396547 original size:16 final size:16
Alignment explanation
Indices: 25396519--25396587 Score: 50
Period size: 16 Copynumber: 4.0 Consensus size: 16
25396509 CTTGATTAAC
*
25396519 ACTA-GCACAAAGCCT
1 ACTAGGCACTAAGCCT
25396534 ACTAGGCACTAAGCCT
1 ACTAGGCACTAAGCCT
*
25396550 GAATAACACCGGCACTAAGCCT
1 -ACT---A--GGCACTAAGCCT
*
25396572 GCTAGGCACTAAGCCT
1 ACTAGGCACTAAGCCT
25396588 GAATAACACC
Statistics
Matches: 43, Mismatches: 4, Indels: 13
0.72 0.07 0.22
Matches are distributed among these distances:
15 4 0.09
16 22 0.51
17 2 0.05
18 1 0.02
20 1 0.02
21 1 0.02
22 12 0.28
ACGTcount: A:0.33, C:0.32, G:0.19, T:0.16
Consensus pattern (16 bp):
ACTAGGCACTAAGCCT
Found at i:25396563 original size:22 final size:22
Alignment explanation
Indices: 25396538--25396648 Score: 93
Period size: 22 Copynumber: 5.6 Consensus size: 22
25396528 AAGCCTACTA
25396538 GGCACTAAGCCTGAATAACACC
1 GGCACTAAGCCTGAATAACACC
*
25396560 GGCACTAAGCCTG-CT---A--
1 GGCACTAAGCCTGAATAACACC
25396576 GGCACTAAGCCTGAATAACACC
1 GGCACTAAGCCTGAATAACACC
* *
25396598 GGCACTAAGCTTG-CT---A--
1 GGCACTAAGCCTGAATAACACC
*
25396614 GGCACTAAGCTTGAATAACACC
1 GGCACTAAGCCTGAATAACACC
*
25396636 AGCACTAAGCCTG
1 GGCACTAAGCCTG
25396649 CTAGGCACTA
Statistics
Matches: 70, Mismatches: 7, Indels: 24
0.69 0.07 0.24
Matches are distributed among these distances:
16 26 0.37
17 2 0.03
18 2 0.03
20 2 0.03
21 2 0.03
22 36 0.51
ACGTcount: A:0.32, C:0.30, G:0.21, T:0.17
Consensus pattern (22 bp):
GGCACTAAGCCTGAATAACACC
Found at i:25396665 original size:38 final size:38
Alignment explanation
Indices: 25396494--25396667 Score: 240
Period size: 38 Copynumber: 4.6 Consensus size: 38
25396484 GGCTCAAAGT
* * * * *
25396494 CTGCTAGGCAATATGCTTGATTAACACTAGCACAAAGC
1 CTGCTAGGCACTAAGCTTGAATAACACCAGCACTAAGC
* * *
25396532 CTACTAGGCACTAAGCCTGAATAACACCGGCACTAAGC
1 CTGCTAGGCACTAAGCTTGAATAACACCAGCACTAAGC
* *
25396570 CTGCTAGGCACTAAGCCTGAATAACACCGGCACTAAGC
1 CTGCTAGGCACTAAGCTTGAATAACACCAGCACTAAGC
*
25396608 TTGCTAGGCACTAAGCTTGAATAACACCAGCACTAAGC
1 CTGCTAGGCACTAAGCTTGAATAACACCAGCACTAAGC
*
25396646 CTGCTAGGCACTAAACTTGAAT
1 CTGCTAGGCACTAAGCTTGAAT
25396668 CAATACATTC
Statistics
Matches: 122, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 122 1.00
ACGTcount: A:0.33, C:0.28, G:0.19, T:0.20
Consensus pattern (38 bp):
CTGCTAGGCACTAAGCTTGAATAACACCAGCACTAAGC
Found at i:25399323 original size:31 final size:31
Alignment explanation
Indices: 25399271--25399331 Score: 95
Period size: 31 Copynumber: 2.0 Consensus size: 31
25399261 TTGTGTCTCA
*
25399271 GGCCATGTGGACATTCGAAGTAGGGACACAC
1 GGCCATGTGGACATTCAAAGTAGGGACACAC
* *
25399302 GGCCTTGTGGACGTTCAAAGTAGGGACACA
1 GGCCATGTGGACATTCAAAGTAGGGACACA
25399332 TGGCTGTGTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.28, C:0.21, G:0.33, T:0.18
Consensus pattern (31 bp):
GGCCATGTGGACATTCAAAGTAGGGACACAC
Found at i:25404518 original size:30 final size:31
Alignment explanation
Indices: 25404482--25404540 Score: 93
Period size: 30 Copynumber: 1.9 Consensus size: 31
25404472 TTTGAGCTTT
25404482 GGGACAAAAATGTAATTATG-CAAAAGTTTA
1 GGGACAAAAATGTAATTATGACAAAAGTTTA
* *
25404512 GGGACAAAATTGTAATTTTGACAAAAGTT
1 GGGACAAAAATGTAATTATGACAAAAGTT
25404541 GAGTTGAAGC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 18 0.69
31 8 0.31
ACGTcount: A:0.44, C:0.07, G:0.20, T:0.29
Consensus pattern (31 bp):
GGGACAAAAATGTAATTATGACAAAAGTTTA
Found at i:25411102 original size:39 final size:39
Alignment explanation
Indices: 25411059--25411138 Score: 160
Period size: 39 Copynumber: 2.1 Consensus size: 39
25411049 AAAGGATAAT
25411059 AAACTAAAGGCTAAATAAAAATAAAACAAAAACTATTCA
1 AAACTAAAGGCTAAATAAAAATAAAACAAAAACTATTCA
25411098 AAACTAAAGGCTAAATAAAAATAAAACAAAAACTATTCA
1 AAACTAAAGGCTAAATAAAAATAAAACAAAAACTATTCA
25411137 AA
1 AA
25411139 CTTCTAATGA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.65, C:0.12, G:0.05, T:0.17
Consensus pattern (39 bp):
AAACTAAAGGCTAAATAAAAATAAAACAAAAACTATTCA
Found at i:25411900 original size:25 final size:25
Alignment explanation
Indices: 25411866--25411915 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
25411856 ACTAAAGTAC
25411866 CCTATGTCCGGTTTATGGTTTATCT
1 CCTATGTCCGGTTTATGGTTTATCT
25411891 CCTATGTCCGGTTTATGGTTTATCT
1 CCTATGTCCGGTTTATGGTTTATCT
25411916 TACTTTAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.12, C:0.20, G:0.20, T:0.48
Consensus pattern (25 bp):
CCTATGTCCGGTTTATGGTTTATCT
Found at i:25412592 original size:16 final size:17
Alignment explanation
Indices: 25412552--25412596 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
25412542 GGGGAATGTG
25412552 TAAAAAT-AAATATAAA
1 TAAAAATGAAATATAAA
* *
25412568 TAGACATGAAA-ATAAA
1 TAAAAATGAAATATAAA
25412584 TAAAAATGAAATA
1 TAAAAATGAAATA
25412597 CGAATAAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.22
Consensus pattern (17 bp):
TAAAAATGAAATATAAA
Found at i:25413537 original size:152 final size:147
Alignment explanation
Indices: 25413196--25413641 Score: 499
Period size: 150 Copynumber: 3.0 Consensus size: 147
25413186 AAAGCATTAC
* * * * *
25413196 TTTTCTTAAAAATCAAAAC-CTTA-TTTCAAAGTAGAT-AAAAAAAATCAAAACTTTG-TATTAA
1 TTTTCTTAAAAATTAAAACTTTTACTTTGAAA-TAGTTGAAAAAAAATCAAAAC-TTGATTTTAA
* * *** * * *
25413257 AATTTTAAAATTTCCTTTAAAATGACTTAAACAAATATATTTTTATTTTTCAAAATCTAAACTTT
64 AATTTTAAACTTTCCTTTAAAATAAAAAAAAAAAACAGATTTTTATTTTTCAAAATCTAAACTTT
*
25413322 CTCCCTTTTTAAAAAAACGCTAT
129 CT--CTTTTTAAAAAAA--ATAT
* * *
25413345 TTTTCTTAAAAATTAAAATTTTTATTTTGAAATAGTTGAAAAAAATAATCAAAACTTGGTTTTAA
1 TTTTCTTAAAAATTAAAACTTTTACTTTGAAATAGTTG-AAAAAA-AATCAAAACTTGATTTTAA
25413410 AATTTTAAACTTTCCTTTAAAATGACAAAAAAAAAACAACAGATTTTTATTTTTCAAAATCTAAA
64 AATTTTAAACTTTCCTTTAAAAT---AAAAAAAAAA-AACAGATTTTTATTTTTCAAAATCTAAA
25413475 CTTTCTC-TTTTAAAAAAAATAT
125 CTTTCTCTTTTTAAAAAAAATAT
* * *
25413497 TTTTCTTAAAGATTAAAGCTTTTACTTTGAAATAGTTGAAAAAAAATCAAAACTTTATTTTAAAA
1 TTTTCTTAAAAATTAAAACTTTTACTTTGAAATAGTTGAAAAAAAATCAAAACTTGATTTTAAAA
* ** * *
25413562 TTTTAATCTTTCCTTTAAAATAACTATAAAAAACATATTTTTATTTGTT-AAAATCTAAACTTTC
66 TTTTAAACTTTCCTTTAAAATAAAAAAAAAAAACAGATTTTTATTT-TTCAAAATCTAAACTTTC
25413626 TCTTTTTTAAAAAAAA
130 TC-TTTTTAAAAAAAA
25413642 AATAAAATTT
Statistics
Matches: 258, Mismatches: 26, Indels: 27
0.83 0.08 0.09
Matches are distributed among these distances:
146 31 0.12
147 9 0.03
148 12 0.05
149 17 0.07
150 46 0.18
151 12 0.05
152 46 0.18
153 36 0.14
154 11 0.04
155 1 0.00
156 5 0.02
157 32 0.12
ACGTcount: A:0.44, C:0.11, G:0.04, T:0.41
Consensus pattern (147 bp):
TTTTCTTAAAAATTAAAACTTTTACTTTGAAATAGTTGAAAAAAAATCAAAACTTGATTTTAAAA
TTTTAAACTTTCCTTTAAAATAAAAAAAAAAAACAGATTTTTATTTTTCAAAATCTAAACTTTCT
CTTTTTAAAAAAAATAT
Found at i:25414402 original size:16 final size:16
Alignment explanation
Indices: 25414381--25414411 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
25414371 TAGGCCTCTA
25414381 AATGCAATGAAAAGTC
1 AATGCAATGAAAAGTC
25414397 AATGCAATGAAAAGT
1 AATGCAATGAAAAGT
25414412 AAACTAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.10, G:0.19, T:0.19
Consensus pattern (16 bp):
AATGCAATGAAAAGTC
Found at i:25414477 original size:42 final size:42
Alignment explanation
Indices: 25414418--25414756 Score: 376
Period size: 42 Copynumber: 8.1 Consensus size: 42
25414408 AAGTAAACTA
* * * * *
25414418 GAAAAGTAAACGGACCTCTACACTTGGGTCTCTAAATGTAAT
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
** *
25414460 GAAAAGTCAAAT-GACCTCCACACCTGGATCTCTAAATGAAAT
1 GAAAAGT-AAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
* * *
25414502 GAAAAGTGAGTGGACCTCAACACCTGGGCCTCTAAATGCAAT
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
* * * * * *
25414544 AAAAAGTAAATGGACCTCTACACCTAGGTCTCTAAATGTAAA
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
* * * *
25414586 GAAAAGTAAATAGACCTCCATATCTGGGCTTCTAAATGCAAT
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
* * *
25414628 GAAAAGTAAACGAACCTCTACACCTGGGCCTCTAAATGCAAT
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
* *** *
25414670 GGAAAG-AGAACAAACCTCCACACCTAGGCCTCTAAATGCAAT
1 GAAAAGTA-AATGGACCTCCACACCTGGGCCTCTAAATGCAAT
*
25414712 GAAAAGTAAATGGACCTCCACACCTGGGCCACTAAATGCAAT
1 GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
25414754 GAA
1 GAA
25414757 TGTTTTCCTT
Statistics
Matches: 247, Mismatches: 46, Indels: 8
0.82 0.15 0.03
Matches are distributed among these distances:
41 3 0.01
42 240 0.97
43 4 0.02
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.21
Consensus pattern (42 bp):
GAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATGCAAT
Found at i:25414645 original size:126 final size:125
Alignment explanation
Indices: 25414419--25414756 Score: 419
Period size: 126 Copynumber: 2.7 Consensus size: 125
25414409 AGTAAACTAG
* *
25414419 AAAAGTAAACGGACCTCTACACTTGGGTCTCTAAATGTAATGAAAAGTCAAATGACCTCCACACC
1 AAAAGTAAACGGACCTCTACACCTAGGTCTCTAAATGTAATGAAAAGT-AAATGACCTCCACACC
* * * ** *
25414484 T-GGATCTCTAAATGAAATGAAAAGTGAGTGGACCTCAACACCTGGGCCTCTAAATGCAATA
65 TGGGCT-TCTAAATGCAATGAAAAGTAAACGAACCTCAACACCTGGGCCTCTAAATGCAATA
* * * *
25414545 AAAAGTAAATGGACCTCTACACCTAGGTCTCTAAATGTAAAGAAAAGTAAATAGACCTCCATATC
1 AAAAGTAAACGGACCTCTACACCTAGGTCTCTAAATGTAATGAAAAGTAAAT-GACCTCCACACC
* *
25414610 TGGGCTTCTAAATGCAATGAAAAGTAAACGAACCTCTACACCTGGGCCTCTAAATGCAATG
65 TGGGCTTCTAAATGCAATGAAAAGTAAACGAACCTCAACACCTGGGCCTCTAAATGCAATA
* ** * * *
25414671 GAAAG-AGAACAAACCTCCACACCTAGGCCTCTAAATGCAATGAAAAGTAAATGGACCTCCACAC
1 AAAAGTA-AACGGACCTCTACACCTAGGTCTCTAAATGTAATGAAAAGTAAAT-GACCTCCACAC
**
25414735 CTGGGCCACTAAATGCAATGAA
64 CTGGGCTTCTAAATGCAATGAA
25414757 TGTTTTCCTT
Statistics
Matches: 182, Mismatches: 27, Indels: 6
0.85 0.13 0.03
Matches are distributed among these distances:
125 5 0.03
126 174 0.96
127 3 0.02
ACGTcount: A:0.39, C:0.23, G:0.17, T:0.21
Consensus pattern (125 bp):
AAAAGTAAACGGACCTCTACACCTAGGTCTCTAAATGTAATGAAAAGTAAATGACCTCCACACCT
GGGCTTCTAAATGCAATGAAAAGTAAACGAACCTCAACACCTGGGCCTCTAAATGCAATA
Found at i:25415183 original size:26 final size:29
Alignment explanation
Indices: 25415153--25415216 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 29
25415143 TCTTGCTCTC
25415153 TCTTTATTTTTTCTT-TTTT-TT-TGGTT
1 TCTTTATTTTTTCTTGTTTTGTTGTGGTT
* *
25415179 TCTTTTTTGTTTTCTTGTTTTGTTGTTGTT
1 TCTTTATT-TTTTCTTGTTTTGTTGTGGTT
25415209 T-TTTATTT
1 TCTTTATTT
25415217 AGATAAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
26 7 0.23
27 7 0.23
28 5 0.16
29 7 0.23
30 5 0.16
ACGTcount: A:0.03, C:0.06, G:0.11, T:0.80
Consensus pattern (29 bp):
TCTTTATTTTTTCTTGTTTTGTTGTGGTT
Found at i:25415212 original size:13 final size:12
Alignment explanation
Indices: 25415169--25415212 Score: 52
Period size: 12 Copynumber: 3.5 Consensus size: 12
25415159 TTTTTTCTTT
*
25415169 TTTTTTGGTTTC
1 TTTTTTGTTTTC
25415181 TTTTTTGTTTTC
1 TTTTTTGTTTTC
*
25415193 TTGTTTTGTTGTTG
1 TT-TTTTGTT-TTC
25415207 TTTTTT
1 TTTTTT
25415213 ATTTAGATAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
12 13 0.46
13 11 0.39
14 4 0.14
ACGTcount: A:0.00, C:0.05, G:0.16, T:0.80
Consensus pattern (12 bp):
TTTTTTGTTTTC
Found at i:25423307 original size:4 final size:4
Alignment explanation
Indices: 25423273--25423315 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
25423263 TGAATAAACA
* * * *
25423273 AATG AACG AATG AGTG AACG AATG GATG AATG AATG AATG AAT
1 AATG AATG AATG AATG AATG AATG AATG AATG AATG AATG AAT
25423316 TAAAAAATAA
Statistics
Matches: 31, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.47, C:0.05, G:0.28, T:0.21
Consensus pattern (4 bp):
AATG
Found at i:25423315 original size:12 final size:12
Alignment explanation
Indices: 25423273--25423314 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
25423263 TGAATAAACA
25423273 AATGAACGAATG
1 AATGAACGAATG
*
25423285 AGTGAACGAATG
1 AATGAACGAATG
* *
25423297 GATGAATGAATG
1 AATGAACGAATG
25423309 AATGAA
1 AATGAA
25423315 TTAAAAAATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.48, C:0.05, G:0.29, T:0.19
Consensus pattern (12 bp):
AATGAACGAATG
Found at i:25428698 original size:47 final size:47
Alignment explanation
Indices: 25428639--25428900 Score: 472
Period size: 47 Copynumber: 5.6 Consensus size: 47
25428629 GAAATGATAG
*
25428639 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGT-A
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
25428685 GTAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 -TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
25428733 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
25428780 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
25428827 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
25428874 TAAGGCCTAATAGCCGATGTGATGAAT
1 TAAGGCCTAATAGCCGATGTGATGAAT
25428901 ATAAGGCCTA
Statistics
Matches: 212, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
47 211 1.00
48 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:25428913 original size:28 final size:28
Alignment explanation
Indices: 25428873--25428928 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
25428863 TATATATGTG
25428873 ATAAGGCCTAATAGCCGATGTGATGAAT
1 ATAAGGCCTAATAGCCGATGTGATGAAT
25428901 ATAAGGCCTAATAGCCGATGTGATGAAT
1 ATAAGGCCTAATAGCCGATGTGATGAAT
25428929 GTGAAAGTGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.36, C:0.14, G:0.25, T:0.25
Consensus pattern (28 bp):
ATAAGGCCTAATAGCCGATGTGATGAAT
Found at i:25428913 original size:75 final size:75
Alignment explanation
Indices: 25428826--25428975 Score: 300
Period size: 75 Copynumber: 2.0 Consensus size: 75
25428816 TATATATGTG
25428826 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
1 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
25428891 TGTGATGAAT
66 TGTGATGAAT
25428901 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
1 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
25428966 TGTGATGAAT
66 TGTGATGAAT
25428976 GTGAAAGTGT
Statistics
Matches: 75, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 75 1.00
ACGTcount: A:0.35, C:0.11, G:0.27, T:0.28
Consensus pattern (75 bp):
ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
TGTGATGAAT
Found at i:25428915 original size:122 final size:122
Alignment explanation
Indices: 25428779--25429022 Score: 479
Period size: 122 Copynumber: 2.0 Consensus size: 122
25428769 TATATGTGTG
25428779 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
1 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
*
25428844 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
66 TGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAAT
25428901 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
1 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
25428966 TGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAAT
66 TGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAAT
25429023 GTGAAAGTGT
Statistics
Matches: 121, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
122 121 1.00
ACGTcount: A:0.35, C:0.10, G:0.27, T:0.29
Consensus pattern (122 bp):
ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
TGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAAT
Found at i:25428932 original size:169 final size:169
Alignment explanation
Indices: 25428732--25429069 Score: 658
Period size: 169 Copynumber: 2.0 Consensus size: 169
25428722 TATATGTGTG
*
25428732 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGA
1 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
*
25428797 TGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
66 TGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
25428862 GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
131 GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
25428901 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
1 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
25428966 TGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
66 TGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
25429031 GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
131 GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
25429070 GTGAAAGTGT
Statistics
Matches: 167, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
169 167 1.00
ACGTcount: A:0.34, C:0.09, G:0.27, T:0.29
Consensus pattern (169 bp):
ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGA
TGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
Found at i:25428954 original size:47 final size:47
Alignment explanation
Indices: 25428901--25429233 Score: 533
Period size: 47 Copynumber: 7.1 Consensus size: 47
25428891 TGTGATGAAT
25428901 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
25428948 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTA
1 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
25428995 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
25429042 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTA
1 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
25429089 ATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
*
25429136 ATAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTG
1 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
* * * * * * * * * *
25429182 ACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTG
1 ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
25429229 ATAAG
1 ATAAG
25429234 TCCCGAAGGG
Statistics
Matches: 269, Mismatches: 16, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
46 40 0.15
47 229 0.85
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.28
Consensus pattern (47 bp):
ATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTG
Found at i:25429060 original size:216 final size:216
Alignment explanation
Indices: 25428686--25429116 Score: 808
Period size: 216 Copynumber: 2.0 Consensus size: 216
25428676 ATATGTGTAG
* *
25428686 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
* *
25428751 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
*
25428816 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
131 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCC
25428881 TAATAGCCGATGTGATGAATA
196 TAATAGCCGATGTGATGAATA
25428902 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
25428967 GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
25429032 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCC
131 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCC
*
25429097 TAATGGCCGATGTGATGAAT
196 TAATAGCCGATGTGATGAAT
25429117 GTGAAAGTGT
Statistics
Matches: 209, Mismatches: 6, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
216 209 1.00
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (216 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCC
TAATAGCCGATGTGATGAATA
Found at i:25429108 original size:263 final size:262
Alignment explanation
Indices: 25428639--25429162 Score: 942
Period size: 263 Copynumber: 2.0 Consensus size: 262
25428629 GAAATGATAG
* * *
25428639 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTAGTAAGGCCTAATGGCCGAT
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAGTAAGGCCTAATAGCCGAT
* *
25428704 GTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
66 GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
* *
25428769 TATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCC
131 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCC
25428834 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
196 TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTG-TGA
25428899 ATA
260 ATA
25428902 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGT-GATAAGGCCTAATAGCCGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAG-TAAGGCCTAATAGCCGA
25428966 TGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
65 TGTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGT
25429031 GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGC
130 GTATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGC
* *
25429096 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGTGA
195 CTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGTGA
25429161 AT
260 AT
25429163 GTGAAAGTGT
Statistics
Matches: 251, Mismatches: 9, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
262 6 0.02
263 245 0.98
ACGTcount: A:0.33, C:0.09, G:0.28, T:0.29
Consensus pattern (262 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAGTAAGGCCTAATAGCCGAT
GTGATGAATGTGAAAGTGTATATATGTAATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTAATAAGGCC
TAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGTGAA
TA
Found at i:25429410 original size:37 final size:37
Alignment explanation
Indices: 25429352--25429430 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
25429342 CCGAGCCCTA
* * * *
25429352 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
*
25429389 AAGACCCGATAACTTCATGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
25429426 AAGAC
1 AAGAC
25429431 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACATGTGGAGATTATGTCCGGGT
Found at i:25450854 original size:27 final size:27
Alignment explanation
Indices: 25450835--25450990 Score: 206
Period size: 27 Copynumber: 5.8 Consensus size: 27
25450825 GGGTATAACA
25450835 GTCATTTTACCCTATGGGGGTACTTT-G
1 GTCATTTTACCCTATGGGGGTA-TTTCG
* * *
25450862 GTCATTTTATCTTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
25450889 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
25450916 GTCATTTTATCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
**
25450943 GTCATTTTACCCTATGGGGGTATTTTA
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
25450970 GTTATTTTGCCTTATGGGGGT
1 GTCATTTTACCCTATGGGGGT
25450991 CTCAGTGCAG
Statistics
Matches: 113, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
26 3 0.03
27 110 0.97
ACGTcount: A:0.16, C:0.15, G:0.25, T:0.44
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:25450874 original size:54 final size:55
Alignment explanation
Indices: 25450809--25450967 Score: 220
Period size: 54 Copynumber: 2.9 Consensus size: 55
25450799 GCCATAACAT
* ** *
25450809 TCATTTCATCTTCTAG-GGGTATAACAGTCATTTTACCCTATGGGGGTACTTT-GG
1 TCATTTTATCTTCTAGAGGGTATTTCGGTCATTTTACCCTATGGGGGTA-TTTCGG
*
25450863 TCATTTTATCTTAT-GAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGG
1 TCATTTTATCTTCTAGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGG
25450917 TCATTTTATC--CTATGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTT
1 TCATTTTATCTTCTA-GAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTT
25450968 TAGTTATTTT
Statistics
Matches: 95, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
52 1 0.01
53 4 0.04
54 90 0.95
ACGTcount: A:0.18, C:0.16, G:0.23, T:0.43
Consensus pattern (55 bp):
TCATTTTATCTTCTAGAGGGTATTTCGGTCATTTTACCCTATGGGGGTATTTCGG
Found at i:25450977 original size:54 final size:54
Alignment explanation
Indices: 25450835--25450977 Score: 241
Period size: 54 Copynumber: 2.6 Consensus size: 54
25450825 GGGTATAACA
* *
25450835 GTCATTTTACCCTATGGGGGTACTTTGGTCATTTTATCTTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTTGGTCATTTTATCCTATGAGGGTATTTCG
*
25450889 GTCATTTTACCCTATGGGGGTATTTCGGTCATTTTATCCTATGAGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTTGGTCATTTTATCCTATGAGGGTATTTCG
* *
25450943 GTCATTTTACCCTATGGGGGTATTTTAGTTATTTT
1 GTCATTTTACCCTATGGGGGTATTTTGGTCATTTT
25450978 GCCTTATGGG
Statistics
Matches: 83, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 83 1.00
ACGTcount: A:0.17, C:0.15, G:0.23, T:0.45
Consensus pattern (54 bp):
GTCATTTTACCCTATGGGGGTATTTTGGTCATTTTATCCTATGAGGGTATTTCG
Found at i:25458997 original size:30 final size:30
Alignment explanation
Indices: 25458940--25458999 Score: 79
Period size: 30 Copynumber: 2.0 Consensus size: 30
25458930 TCTTTTTGAA
*
25458940 AATATTTACAAAAAGAGGCATATAATTTTT
1 AATATTTACAAAAAGAGGCATACAATTTTT
25458970 AATATTTACAAAAA-AGAGCA-ACCAATTTTT
1 AATATTTACAAAAAGAG-GCATA-CAATTTTT
25459000 CTAAAAATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 3 0.11
30 24 0.89
ACGTcount: A:0.48, C:0.10, G:0.08, T:0.33
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCATACAATTTTT
Found at i:25464639 original size:51 final size:51
Alignment explanation
Indices: 25464563--25464742 Score: 170
Period size: 51 Copynumber: 3.5 Consensus size: 51
25464553 TATAAACACG
* *
25464563 TGTGTAGTACTAAGTGCAGGCTACTACGAGTATC-GATAGATAATGGTCACA
1 TGTGTAGTACTATGTGCAGGCTACTACGAGTACCGGA-AGATAATGGTCACA
* * * ** *
25464614 TGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGAAGGTTTTGGTCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGAGTACCGGAAGATAATGGTCACA
* * * * *
25464665 TGTGTAGTACTATGTGCAGGCTACTAC-ATGAACTGGAA-AGT-TTGATCACG
1 TGTGTAGTACTATGTGCAGGCTACTACGA-GTACCGGAAGA-TAATGGTCACA
* *
25464715 TGTGTAGTACTAAGTGAAGGCTACTACG
1 TGTGTAGTACTATGTGCAGGCTACTACG
25464743 TGTATCGAAT
Statistics
Matches: 109, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
50 33 0.30
51 74 0.68
52 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (51 bp):
TGTGTAGTACTATGTGCAGGCTACTACGAGTACCGGAAGATAATGGTCACA
Found at i:25467367 original size:20 final size:20
Alignment explanation
Indices: 25467342--25467380 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
25467332 TACTTTCTTC
25467342 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
25467362 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
25467381 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:25468179 original size:28 final size:28
Alignment explanation
Indices: 25468148--25468415 Score: 353
Period size: 28 Copynumber: 9.4 Consensus size: 28
25468138 AAACAGCATG
* * * *
25468148 CAGTAACAGTCTGAGCCTTAGCCCTATT
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
*
25468176 CAGTGACAGTACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGT---GTG--GGCCTTAGCCCAATA
25468209 CAGTAACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
25468237 CAGTAACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
* *
25468265 CAGTAATAGTGTGAGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
*
25468293 CAG-AATCAGTGTGGGCCTTAGCCCATTA
1 CAGTAA-CAGTGTGGGCCTTAGCCCAATA
25468321 CAG-AATCAGTGTGGGCCTTAGCCCAATA
1 CAGTAA-CAGTGTGGGCCTTAGCCCAATA
25468349 CAGTAACAGTGTGGGCCTTAGCCCAATA
1 CAGTAACAGTGTGGGCCTTAGCCCAATA
* *
25468377 TAG-AATCAGTGTAGGCCTTAGCCCAATA
1 CAGTAA-CAGTGTGGGCCTTAGCCCAATA
25468405 CAGTAACAGTG
1 CAGTAACAGTG
25468416 CAGTGCAATA
Statistics
Matches: 216, Mismatches: 15, Indels: 18
0.87 0.06 0.07
Matches are distributed among these distances:
27 4 0.02
28 182 0.84
29 4 0.02
30 3 0.01
31 2 0.01
33 21 0.10
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.23
Consensus pattern (28 bp):
CAGTAACAGTGTGGGCCTTAGCCCAATA
Found at i:25469159 original size:27 final size:27
Alignment explanation
Indices: 25468833--25469162 Score: 373
Period size: 27 Copynumber: 12.2 Consensus size: 27
25468823 GGTATAACAG
* *
25468833 TCATTTTACCCTATTGGGGTATTTCGG
1 TCATTTTACCCTATGGGGGTATTTCGA
* *
25468860 TTATTTTACCCTATAGGGGTATTTC-A
1 TCATTTTACCCTATGGGGGTATTTCGA
* * *
25468886 GCTATTTTACCCTATGGAGGTATTTCGG
1 TC-ATTTTACCCTATGGGGGTATTTCGA
* *
25468914 TCATTTTACCCTATGAGGGTATTTCAA
1 TCATTTTACCCTATGGGGGTATTTCGA
*
25468941 TCATTTTACCCTATAGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
* *
25468968 TCATTTTACCCTGTGGGGGTAATTT-GG
1 TCATTTTACCCTATGGGGGT-ATTTCGA
* *
25468995 TCATTTTACCCTGTGGGGGTAATTC-A
1 TCATTTTACCCTATGGGGGTATTTCGA
*
25469021 GTCATTTTACCCTATGGGGGTAATTCTG-
1 -TCATTTTACCCTATGGGGGTATTTC-GA
*
25469049 TCATTTTACCCTATGGGGGTAATTT-GG
1 TCATTTTACCCTATGGGGGT-ATTTCGA
* * *
25469076 TTATTTTACCCTGTGGGGGTAATTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
** * *
25469103 TCATTTTACCCTGCGGGGGTAATTCAA
1 TCATTTTACCCTATGGGGGTATTTCGA
25469130 TCATTTTACCCTATGGGGGTATTTCGA
1 TCATTTTACCCTATGGGGGTATTTCGA
25469157 TCATTT
1 TCATTT
25469163 ATCAACCTCT
Statistics
Matches: 259, Mismatches: 34, Indels: 20
0.83 0.11 0.06
Matches are distributed among these distances:
26 7 0.03
27 244 0.94
28 8 0.03
ACGTcount: A:0.19, C:0.18, G:0.22, T:0.41
Consensus pattern (27 bp):
TCATTTTACCCTATGGGGGTATTTCGA
Found at i:25469388 original size:17 final size:18
Alignment explanation
Indices: 25469366--25469401 Score: 65
Period size: 17 Copynumber: 2.1 Consensus size: 18
25469356 TTCATCCGTG
25469366 TGGGCCCACA-AGCCCAT
1 TGGGCCCACACAGCCCAT
25469383 TGGGCCCACACAGCCCAT
1 TGGGCCCACACAGCCCAT
25469401 T
1 T
25469402 TCGACCCAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 10 0.56
18 8 0.44
ACGTcount: A:0.22, C:0.42, G:0.22, T:0.14
Consensus pattern (18 bp):
TGGGCCCACACAGCCCAT
Found at i:25470737 original size:50 final size:50
Alignment explanation
Indices: 25470674--25470772 Score: 135
Period size: 50 Copynumber: 2.0 Consensus size: 50
25470664 TGTACTACCA
* * * **
25470674 ATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGATGCCC
1 ATGCCATATCCCAGACATGATCTTACAGGGGACCTCTCATATCGATGCCC
* *
25470724 ATGCCATGTCCCAGACATGATCTTACAGGGGACCTCTCATCTCGATGCC
1 ATGCCATATCCCAGACATGATCTTACAGGGGACCTCTCATATCGATGCC
25470773 AACACCATGT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 42 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (50 bp):
ATGCCATATCCCAGACATGATCTTACAGGGGACCTCTCATATCGATGCCC
Found at i:25470781 original size:50 final size:50
Alignment explanation
Indices: 25470677--25470814 Score: 134
Period size: 50 Copynumber: 2.8 Consensus size: 50
25470667 ACTACCAATG
* * * * ** * **
25470677 CCATATCCCAGATATGGTCTTACATGGGAGTTCTCATATCGATGCCCATG
1 CCATGTCCCAGACATGATCTTACAGGGGACCTCTCATATCGATGCCAACA
*
25470727 CCATGTCCCAGACATGATCTTACAGGGGACCTCTCATCTCGATGCCAACA
1 CCATGTCCCAGACATGATCTTACAGGGGACCTCTCATATCGATGCCAACA
* * * *
25470777 CCATGTCCTAGACATGGTGTTA-TGTGGGACCTCTCATA
1 CCATGTCCCAGACATGATCTTACAG-GGGACCTCTCATA
25470815 ACCTCAATAA
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
49 1 0.01
50 71 0.99
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (50 bp):
CCATGTCCCAGACATGATCTTACAGGGGACCTCTCATATCGATGCCAACA
Found at i:25475012 original size:27 final size:27
Alignment explanation
Indices: 25474933--25475012 Score: 126
Period size: 27 Copynumber: 3.0 Consensus size: 27
25474923 CCAATGATTC
* *
25474933 GGGGAATCAGCACTTAGCAACCCC-TC
1 GGGGAATCAACACTTAGCAACCCCTTA
25474959 GAGGGAATCAACACTTAGCAACCCCTTA
1 G-GGGAATCAACACTTAGCAACCCCTTA
25474987 GGGGAATCAACACTTAGCAACCCCTT
1 GGGGAATCAACACTTAGCAACCCCTT
25475013 CACATTTAAG
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
26 1 0.02
27 47 0.94
28 2 0.04
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.17
Consensus pattern (27 bp):
GGGGAATCAACACTTAGCAACCCCTTA
Found at i:25475111 original size:128 final size:129
Alignment explanation
Indices: 25474868--25475111 Score: 409
Period size: 128 Copynumber: 1.9 Consensus size: 129
25474858 GTGGATTCAG
* * * *
25474868 CACTTAGCAACCCCTTTCACATTTAAGATATGGTGGGTTCAGCACTTAGCAACCACCAATGATTC
1 CACTTAGCAACCCCTTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACCACCAATGAATA
*
25474933 GGGGAATCAGCACTTAGCAACCCCTCGAGGGAATCAACACTTAGCAACCCCTTAGGGGAATCAA
66 GGGGAATCAACACTTAGCAACCCCTCGAGGGAATCAACACTTAGCAACCCCTTAGGGGAATCAA
25474997 CACTTAGCAACCCC-TTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACCACCAATGAATA
1 CACTTAGCAACCCCTTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACCACCAATGAATA
* * *
25475061 GGGGAATCAACACTTAGCAACCCCTTGGGGGAATCAGCACTTAGCAACCCC
66 GGGGAATCAACACTTAGCAACCCCTCGAGGGAATCAACACTTAGCAACCCC
25475112 CTTTTTATTC
Statistics
Matches: 107, Mismatches: 8, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
128 93 0.87
129 14 0.13
ACGTcount: A:0.32, C:0.29, G:0.19, T:0.20
Consensus pattern (129 bp):
CACTTAGCAACCCCTTTCACATTTAAGATACGGTGGGATCAGCACTTAGCAACCACCAATGAATA
GGGGAATCAACACTTAGCAACCCCTCGAGGGAATCAACACTTAGCAACCCCTTAGGGGAATCAA
Found at i:25475861 original size:102 final size:102
Alignment explanation
Indices: 25475685--25475901 Score: 407
Period size: 102 Copynumber: 2.1 Consensus size: 102
25475675 TTGTTTAACA
*
25475685 TAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCACCAATGAGTAGGGG
1 TAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGG
*
25475750 AATCAGCACTTAGCAAGCCCTTGGGGGAATCAACACT
66 AATCAGCACTTAGCAACCCCTTGGGGGAATCAACACT
25475787 TAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGG
1 TAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGG
*
25475852 AATCAGCACTTAGCAACCCCTTGGGGGAATCAGCACT
66 AATCAGCACTTAGCAACCCCTTGGGGGAATCAACACT
25475889 TAGCAACCCCCTT
1 TAGCAACCCCCTT
25475902 TTTATTCAAT
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
102 112 1.00
ACGTcount: A:0.32, C:0.28, G:0.20, T:0.20
Consensus pattern (102 bp):
TAGCAACCCCCTTCACATTTAAGATACGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGG
AATCAGCACTTAGCAACCCCTTGGGGGAATCAACACT
Found at i:25481715 original size:37 final size:37
Alignment explanation
Indices: 25481672--25481747 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
25481662 TACTTTCAAC
*
25481672 ATCATCTGCCATACTTCGGTTAGGATCCATTTACTAT
1 ATCATCTGCCATACTTCGGTCAGGATCCATTTACTAT
25481709 ATCATCTGCCATACTTCGGTCAGGATCCATTTACTAT
1 ATCATCTGCCATACTTCGGTCAGGATCCATTTACTAT
25481746 AT
1 AT
25481748 AAAACAAAAT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.25, G:0.13, T:0.37
Consensus pattern (37 bp):
ATCATCTGCCATACTTCGGTCAGGATCCATTTACTAT
Found at i:25485238 original size:27 final size:27
Alignment explanation
Indices: 25485192--25485376 Score: 210
Period size: 27 Copynumber: 6.8 Consensus size: 27
25485182 GGGTAAAACA
* * * *
25485192 ATCATTTTATCCTACAGGGGTATTTTG
1 ATCATTTTACCCTTCGGGGGTATTTCG
* * *
25485219 GTTATTTTACCTTTCGGGGGTATTTCG
1 ATCATTTTACCCTTCGGGGGTATTTCG
* * *
25485246 ATAATTTTACCCTTCGAGGGTATTTCA
1 ATCATTTTACCCTTCGGGGGTATTTCG
* *
25485273 ATCATTTTACCCTTTGGGGGTAATTCG
1 ATCATTTTACCCTTCGGGGGTATTTCG
* *
25485300 GTCATTTTACCCTTCGGGGGTAATTCG
1 ATCATTTTACCCTTCGGGGGTATTTCG
*
25485327 ATCATTTTACCC-TCTGGGGGTAATTCG
1 ATCATTTTACCCTTC-GGGGGTATTTCG
25485354 ATCATTTTTACCCTTCGGGGGTA
1 ATCA-TTTTACCCTTCGGGGGTA
25485377 ACTCGGCCAT
Statistics
Matches: 135, Mismatches: 20, Indels: 5
0.84 0.12 0.03
Matches are distributed among these distances:
26 2 0.01
27 116 0.86
28 15 0.11
29 2 0.01
ACGTcount: A:0.18, C:0.19, G:0.22, T:0.41
Consensus pattern (27 bp):
ATCATTTTACCCTTCGGGGGTATTTCG
Found at i:25485317 original size:81 final size:81
Alignment explanation
Indices: 25485190--25485388 Score: 238
Period size: 81 Copynumber: 2.4 Consensus size: 81
25485180 AGGGGTAAAA
* * * * * * * *
25485190 CAATCATTTTATCCTACAGGGGTATTTTGGTTATTTTACCTTTCGGGGGTATTTCGATAATTTTA
1 CAATCATTTTACCCTTCGGGGGTAATTCGGTCATTTTACCCTTCGGGGGTAATTCGATAATTTTA
*
25485255 CCCT-TCGAGGGTATTT
66 CCCTCT-GAGGGTAATT
* *
25485271 CAATCATTTTACCCTTTGGGGGTAATTCGGTCATTTTACCCTTCGGGGGTAATTCGATCATTTTA
1 CAATCATTTTACCCTTCGGGGGTAATTCGGTCATTTTACCCTTCGGGGGTAATTCGATAATTTTA
*
25485336 CCCTCTGGGGGTAATT
66 CCCTCTGAGGGTAATT
* * *
25485352 CGATCATTTTTACCCTTCGGGGGTAACTCGGCCATTT
1 CAATCA-TTTTACCCTTCGGGGGTAATTCGGTCATTT
25485389 AACAACCTTT
Statistics
Matches: 100, Mismatches: 16, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 72 0.72
82 28 0.28
ACGTcount: A:0.19, C:0.20, G:0.21, T:0.40
Consensus pattern (81 bp):
CAATCATTTTACCCTTCGGGGGTAATTCGGTCATTTTACCCTTCGGGGGTAATTCGATAATTTTA
CCCTCTGAGGGTAATT
Found at i:25485388 original size:28 final size:27
Alignment explanation
Indices: 25485222--25485377 Score: 215
Period size: 27 Copynumber: 5.7 Consensus size: 27
25485212 TATTTTGGTT
* * *
25485222 ATTTTACCTTTCGGGGGTATTTCGATA
1 ATTTTACCCTTCGGGGGTAATTCGATC
* * *
25485249 ATTTTACCCTTCGAGGGTATTTCAATC
1 ATTTTACCCTTCGGGGGTAATTCGATC
* *
25485276 ATTTTACCCTTTGGGGGTAATTCGGTC
1 ATTTTACCCTTCGGGGGTAATTCGATC
25485303 ATTTTACCCTTCGGGGGTAATTCGATC
1 ATTTTACCCTTCGGGGGTAATTCGATC
25485330 ATTTTACCC-TCTGGGGGTAATTCGATC
1 ATTTTACCCTTC-GGGGGTAATTCGATC
25485357 ATTTTTACCCTTCGGGGGTAA
1 A-TTTTACCCTTCGGGGGTAA
25485378 CTCGGCCATT
Statistics
Matches: 115, Mismatches: 11, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
26 2 0.02
27 95 0.83
28 16 0.14
29 2 0.02
ACGTcount: A:0.19, C:0.20, G:0.22, T:0.40
Consensus pattern (27 bp):
ATTTTACCCTTCGGGGGTAATTCGATC
Found at i:25486946 original size:25 final size:25
Alignment explanation
Indices: 25486895--25486948 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
25486885 TGAACCTCTG
*
25486895 ACCTCCTTACCACACCTATGACGCC
1 ACCTCCTTACCACACCTATGACACC
* * *
25486920 ACCTCCTTGCCACACCTGTGTCACC
1 ACCTCCTTACCACACCTATGACACC
25486945 ACCT
1 ACCT
25486949 TGCCACTACA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.20, C:0.48, G:0.09, T:0.22
Consensus pattern (25 bp):
ACCTCCTTACCACACCTATGACACC
Found at i:25492171 original size:42 final size:41
Alignment explanation
Indices: 25492124--25492227 Score: 111
Period size: 42 Copynumber: 2.5 Consensus size: 41
25492114 TTCTGAGGTG
* * *
25492124 TGATTTCATGTAAGACCATGTCTGGGGCATTGGCATCG-TATA
1 TGATTTCATGTAAGACCAT-T-TGGGACAGTGACATCGATATA
*
25492166 TGATTTCGTGTAAGACTCTATTTGGGACAGTGACATCGATATA
1 TGATTTCATGTAAGAC-C-ATTTGGGACAGTGACATCGATATA
* *
25492209 TTATATCATGTAAGACCAT
1 TGATTTCATGTAAGACCAT
25492228 ATCTAGGATA
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
41 2 0.04
42 29 0.56
43 19 0.37
44 2 0.04
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (41 bp):
TGATTTCATGTAAGACCATTTGGGACAGTGACATCGATATA
Found at i:25494887 original size:47 final size:49
Alignment explanation
Indices: 25494833--25494936 Score: 140
Period size: 51 Copynumber: 2.1 Consensus size: 49
25494823 TTAGGATTTT
* *
25494833 ATGTGATGGATGTGAA-C-ATACGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACCGATACATATGTGTGATAAGGCCGAATGGCCA
* *
25494880 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAA-CCG-ATACATATGTGTGATAAGGCCGAATGGCCA
25494931 ATGTGA
1 ATGTGA
25494937 AATATATCTG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
47 15 0.31
49 1 0.02
51 33 0.67
ACGTcount: A:0.31, C:0.12, G:0.30, T:0.28
Consensus pattern (49 bp):
ATGTGATGAATGTGAACCGATACATATGTGTGATAAGGCCGAATGGCCA
Found at i:25494982 original size:48 final size:48
Alignment explanation
Indices: 25494904--25495275 Score: 427
Period size: 48 Copynumber: 7.8 Consensus size: 48
25494894 AACCCGTATA
* *
25494904 TATATGTGTGATAAGGCCGAATGGCTAATGTGAAATATATCTGTGATATG
1 TATATGTG-G-TAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
* * *
25494954 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
* *
25495002 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATCTATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
* * *
25495050 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
*
25495098 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
* *
25495146 TATATGTGGTAAAGCCGAATGGCCAATGTG--ATA-A-ATGTGAGCATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGA-TATG
* * * * * *
25495191 CATATATGTGATAAGGCCGAATGGCCAATGTG--GTGA-ATATG-AAAATG
1 --TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT-ATATATGTGATATG
* *
25495238 CATATATGCGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 --TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
25495276 GTAGGCGATG
Statistics
Matches: 281, Mismatches: 33, Indels: 17
0.85 0.10 0.05
Matches are distributed among these distances:
44 5 0.02
45 4 0.01
46 3 0.01
47 59 0.21
48 197 0.70
49 5 0.02
50 8 0.03
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
Found at i:25495031 original size:96 final size:96
Alignment explanation
Indices: 25494904--25495222 Score: 493
Period size: 96 Copynumber: 3.3 Consensus size: 96
25494894 AACCCGTATA
* *
25494904 TATATGTGTGATAAGGCCGAATGGCTAATGTGAAATATATCTGTGATATGTATATGTGGTAAAGC
1 TATATGTG-G-TAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGC
25494969 CGAATGGCGAATGTGAAATATGTATGAGATATG
64 CGAATGGCGAATGTGAAATATGTATGAGATATG
*
25495002 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATCTATGTGTGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
25495067 AATGGCGAATGTGAAATATGTATGAGATATG
66 AATGGCGAATGTGAAATATGTATGAGATATG
25495098 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
* *
25495163 AATGGCCAATGTGATAA-ATG--TGAG-CATG
66 AATGGCGAATGTGA-AATATGTATGAGATATG
* * *
25495191 CATATATGTGATAAGGCCGAATGGCCAATGTG
1 --TATATGTGGTAAAGCCGAATGGCTAATGTG
25495223 GTGAATATGA
Statistics
Matches: 209, Mismatches: 9, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
93 3 0.01
94 4 0.02
95 27 0.13
96 164 0.78
97 3 0.01
98 8 0.04
ACGTcount: A:0.33, C:0.08, G:0.28, T:0.30
Consensus pattern (96 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
AATGGCGAATGTGAAATATGTATGAGATATG
Found at i:25495475 original size:37 final size:37
Alignment explanation
Indices: 25495425--25495539 Score: 176
Period size: 37 Copynumber: 3.1 Consensus size: 37
25495415 GGAAATATAT
*
25495425 TCCGGGTGAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
*
25495462 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
* * * *
25495499 TCCGGGTAAGATCCGATAACTTCGTGTGGAGATTACG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
25495536 TCCG
1 TCCG
25495540 AGCTAAAGGT
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.22, C:0.20, G:0.32, T:0.26
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
Found at i:25496865 original size:40 final size:40
Alignment explanation
Indices: 25496810--25496979 Score: 295
Period size: 40 Copynumber: 4.2 Consensus size: 40
25496800 AGAGTGATAT
*
25496810 AGTTCCGAAGAGCATTCGTGCTAGTGACGTATCCGGACTA
1 AGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTA
*
25496850 AGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGAACTA
1 AGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTA
*
25496890 AGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTA
1 AGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTA
* *
25496930 AATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTA
1 AGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTA
25496970 AGTTCCGAAG
1 AGTTCCGAAG
25496980 GTGCTAAACC
Statistics
Matches: 121, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 121 1.00
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
AGTTCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTA
Found at i:25497019 original size:56 final size:56
Alignment explanation
Indices: 25496926--25497035 Score: 157
Period size: 56 Copynumber: 2.0 Consensus size: 56
25496916 ATGTATCCGG
* * *
25496926 GCTAAATCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGACTAAGTTCCGAAGGT
1 GCTAAACCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGGT
* * * *
25496982 GCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATATCCGGGCTAGGTCCCGAAG
1 GCTAAACCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAG
25497036 AGCAATCATG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 47 1.00
ACGTcount: A:0.25, C:0.24, G:0.28, T:0.24
Consensus pattern (56 bp):
GCTAAACCCCGAAGAGCATTCGTGCTAGTGATATATCCGGACTAAGTCCCGAAGGT
Found at i:25500954 original size:47 final size:49
Alignment explanation
Indices: 25500903--25501006 Score: 131
Period size: 51 Copynumber: 2.1 Consensus size: 49
25500893 TTAGGATTTT
* * *
25500903 ATGTGATGGATGTGAA-C-ATGCGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACCGATACATATGTGTGATAAGGCCGAATGGCCA
* *
25500950 ATGTGATGAATGTGAACCCGTATATATATGTGTGATAAGGCCGAATGGCTA
1 ATGTGATGAATGTGAA-CCG-ATACATATGTGTGATAAGGCCGAATGGCCA
25501001 ATGTGA
1 ATGTGA
25501007 AATATATCTG
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
47 15 0.31
49 1 0.02
51 32 0.67
ACGTcount: A:0.30, C:0.12, G:0.31, T:0.28
Consensus pattern (49 bp):
ATGTGATGAATGTGAACCGATACATATGTGTGATAAGGCCGAATGGCCA
Found at i:25501117 original size:48 final size:48
Alignment explanation
Indices: 25500974--25501344 Score: 427
Period size: 48 Copynumber: 7.8 Consensus size: 48
25500964 AACCCGTATA
* *
25500974 TATATGTGTGATAAGGCCGAATGGCTAATGTGAAATATATCTGTGATATG
1 TATATGTG-G-TAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
* * *
25501024 TATATGTGGTAAAGCC-AATGGCGAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
*
25501071 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
* * *
25501119 TATATGTGGTAAAGCCGAATGGCGAATGTGAAATATGTATGAGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
*
25501167 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
* *
25501215 TATATGTGGTAAAGCCGAATGGCCAATGTG--ATA-A-ATGTGAGCATG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGA-TATG
* * * * * *
25501260 CATATATGTGATAAGGCCGAATGGCCAATGTG--GTGA-ATATG-AAAATG
1 --TATATGTGGTAAAGCCGAATGGCTAATGTGAAAT-ATATATGTGATATG
* *
25501307 CATATATGCGGTAAAGCCGAATGGCTAGTGTGAAATAT
1 --TATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
25501345 GTAGGCGATG
Statistics
Matches: 281, Mismatches: 31, Indels: 19
0.85 0.09 0.06
Matches are distributed among these distances:
44 5 0.02
45 4 0.01
46 3 0.01
47 102 0.36
48 154 0.55
49 5 0.02
50 8 0.03
ACGTcount: A:0.34, C:0.08, G:0.27, T:0.30
Consensus pattern (48 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGTGATATG
Found at i:25501185 original size:96 final size:96
Alignment explanation
Indices: 25500974--25501291 Score: 493
Period size: 96 Copynumber: 3.3 Consensus size: 96
25500964 AACCCGTATA
* *
25500974 TATATGTGTGATAAGGCCGAATGGCTAATGTGAAATATATCTGTGATATGTATATGTGGTAAAGC
1 TATATGTG-G-TAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGC
25501039 C-AATGGCGAATGTGAAATATGTATGAGATATG
64 CGAATGGCGAATGTGAAATATGTATGAGATATG
25501071 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
25501136 AATGGCGAATGTGAAATATGTATGAGATATG
66 AATGGCGAATGTGAAATATGTATGAGATATG
25501167 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
1 TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
* *
25501232 AATGGCCAATGTGATAA-ATG--TGAG-CATG
66 AATGGCGAATGTGA-AATATGTATGAGATATG
* * *
25501260 CATATATGTGATAAGGCCGAATGGCCAATGTG
1 --TATATGTGGTAAAGCCGAATGGCTAATGTG
25501292 GTGAATATGA
Statistics
Matches: 210, Mismatches: 7, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
93 3 0.01
94 4 0.02
95 80 0.38
96 113 0.54
97 10 0.05
ACGTcount: A:0.34, C:0.08, G:0.28, T:0.31
Consensus pattern (96 bp):
TATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTAAAGCCG
AATGGCGAATGTGAAATATGTATGAGATATG
Found at i:25501284 original size:47 final size:45
Alignment explanation
Indices: 25500924--25501331 Score: 311
Period size: 48 Copynumber: 8.5 Consensus size: 45
25500914 GTGAACATGC
* * * *
25500924 GTATGTGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAACCCGTAT
1 GTATATGTGGTAAAGCCGAATGGCCAATGTGATAAATGTG-A---GTAT
* * * *
25500973 ATATATGTGTGATAAGGCCGAATGGCTAATGTGAAATATATCTGTGA-TAT
1 GTATATGTG-G-TAAAGCCGAATGGCCAATGTG--ATA-A-ATGTGAGTAT
*
25501023 GTATATGTGGTAAAGCC-AATGGCGAATGTGA-AATATGTATGAGATAT
1 GTATATGTGGTAAAGCCGAATGGCCAATGTGATAA-ATG--TGAG-TAT
* * *
25501070 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
1 GTATATGTGGTAAAGCCGAATGGCCAATGTG--ATAAATGTGAG-TAT
*
25501118 GTATATGTGGTAAAGCCGAATGGCGAATGTGA-AATATGTATGAGATAT
1 GTATATGTGGTAAAGCCGAATGGCCAATGTGATAA-ATG--TGAG-TAT
* * *
25501166 GTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATAT
1 GTATATGTGGTAAAGCCGAATGGCCAATGTG--ATAAATGTGAG-TAT
*
25501214 GTATATGTGGTAAAGCCGAATGGCCAATGTGATAAATGTGAGCAT
1 GTATATGTGGTAAAGCCGAATGGCCAATGTGATAAATGTGAGTAT
* * * * * **
25501259 GCATATATGTGATAAGGCCGAATGGCCAATGTGGTGAATATGAAAAT
1 G--TATATGTGGTAAAGCCGAATGGCCAATGTGATAAATGTGAGTAT
*
25501306 GCATATATGCGGTAAAGCCGAATGGC
1 G--TATATGTGGTAAAGCCGAATGGC
25501332 TAGTGTGAAA
Statistics
Matches: 304, Mismatches: 33, Indels: 46
0.79 0.09 0.12
Matches are distributed among these distances:
43 4 0.01
44 1 0.00
45 8 0.03
46 13 0.04
47 92 0.30
48 129 0.42
49 8 0.03
50 19 0.06
51 22 0.07
53 2 0.01
54 2 0.01
55 4 0.01
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (45 bp):
GTATATGTGGTAAAGCCGAATGGCCAATGTGATAAATGTGAGTAT
Done.