Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 84 of 170
Found at i:25966261 original size:431 final size:431
Alignment explanation
Indices: 25965458--25966313 Score: 1446
Period size: 431 Copynumber: 2.0 Consensus size: 431
25965448 TATGGTTTGT
* *
25965458 CTTCTTGTTTGGGCTTGGAATCATCTTATTAGGCCTTGCCTTCAAGAACTTGGGCTTGTATTCCA
1 CTTCTTGATTCGGCTTGGAATCATCTTATTAGGCCTTGCCTTCAAGAACTTGGGCTTGTATTCCA
* * *
25965523 TCTTCTACCAAAATTGGTTCGTTGATGCTCATAACGGAGATCCAATGCGCTTTGGCTGCAAGATT
66 TCTTCTACCAAAATTGGTTCGTTGAGGCTCATAACAGAGATCCAATGCGATTTGGCTGCAAGATT
25965588 TGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCC
131 TGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCC
* * *
25965653 AAACAGCAAGATTGGGCCATGATTCGGTTTCTTGATTTTCTTGAAAATAAGAAAGTGAATCTTGA
196 AAACAGCAAGATTGGGCCAAGATTCAGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGA
* * *
25965718 TTTTCTCTTTCTTTCATGTACGCATCCAATGCCTTGCTAACAAACTCCTGAATGGTCCCATTTAG
261 TTTTCTCTTTCTCTCATATACGCATCCAAGGCCTTGCTAACAAACTCCTGAATGGTCCCATTTAG
*
25965783 TTTGGAACACATTTGTCGGGCCTTTGATCTTGTTATTGGGCCTTGTGGTAATTTGAGCCCATCAC
326 TTTGGAACACATTTGTCGGGCCTTTGATCTCGTTATTGGGCCTTGTGGTAATTTGAGCCCATCAC
*
25965848 GTTCTTGGGCTTGGGTTGGGCCTTTGTGACTCGTATCAGGA
391 GTTCTTGGGCTTGGGTTGGGCATTTGTGACTCGTATCAGGA
* *
25965889 CTTCTTGATTCGGCTTGGACTCATCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTATTCCA
1 CTTCTTGATTCGGCTTGGAATCATCTTATTAGGCCTTGCCTTCAAGAACTTGGGCTTGTATTCCA
* *
25965954 TC-TCTTACCGAAATTGGGTT-GTTGAGGCTCGTAACAGAGATCCAATGCGATTTGGCTGCAAGA
66 TCTTC-TACCAAAATT-GGTTCGTTGAGGCTCATAACAGAGATCCAATGCGATTTGGCTGCAAGA
25966017 TTTGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCT
129 TTTGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCT
* *
25966082 CCAAACAGTAAGATTGGGCTAAGATTCAGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTT
194 CCAAACAGCAAGATTGGGCCAAGATTCAGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTT
* * * * *
25966147 GATTTTCTCTTTCTCTCGTATATGCATCTAAGGCCTTGCTAACGAACTCCTGGATGGTCCCATTT
259 GATTTTCTCTTTCTCTCATATACGCATCCAAGGCCTTGCTAACAAACTCCTGAATGGTCCCATTT
*
25966212 AGTTTGGAACACATTTTTCGGGCCTTTGATCTCGTTATTGGGCCTTGTGGTAATTTGAGCCCATC
324 AGTTTGGAACACATTTGTCGGGCCTTTGATCTCGTTATTGGGCCTTGTGGTAATTTGAGCCCATC
*
25966277 ACGTTCTTGGGCTTTGGTTGGGCATTTGTGACTCGTA
389 ACGTTCTTGGGCTTGGGTTGGGCATTTGTGACTCGTA
25966314 CCACAAGCAA
Statistics
Matches: 397, Mismatches: 26, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
430 2 0.01
431 391 0.98
432 4 0.01
ACGTcount: A:0.21, C:0.20, G:0.22, T:0.37
Consensus pattern (431 bp):
CTTCTTGATTCGGCTTGGAATCATCTTATTAGGCCTTGCCTTCAAGAACTTGGGCTTGTATTCCA
TCTTCTACCAAAATTGGTTCGTTGAGGCTCATAACAGAGATCCAATGCGATTTGGCTGCAAGATT
TGGTTTCTTGGACCAAGATTTCCAAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCC
AAACAGCAAGATTGGGCCAAGATTCAGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGA
TTTTCTCTTTCTCTCATATACGCATCCAAGGCCTTGCTAACAAACTCCTGAATGGTCCCATTTAG
TTTGGAACACATTTGTCGGGCCTTTGATCTCGTTATTGGGCCTTGTGGTAATTTGAGCCCATCAC
GTTCTTGGGCTTGGGTTGGGCATTTGTGACTCGTATCAGGA
Found at i:25969091 original size:21 final size:22
Alignment explanation
Indices: 25969053--25969109 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
25969043 TGAACAAGCC
25969053 ACCACATAATTCCTGAT-AACG
1 ACCACATAATTCCTGATAAACG
* *
25969074 ACCACATAATT-GTAGATAAACT
1 ACCACATAATTCCT-GATAAACG
25969096 ACCACATAACTTCC
1 ACCACATAA-TTCC
25969110 ACCTTTCACA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 1 0.03
21 14 0.48
22 12 0.41
23 2 0.07
ACGTcount: A:0.40, C:0.28, G:0.07, T:0.25
Consensus pattern (22 bp):
ACCACATAATTCCTGATAAACG
Found at i:25979484 original size:22 final size:22
Alignment explanation
Indices: 25979435--25979475 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
25979425 GCCTTGATTA
*
25979435 TTAA-TATCATTATTATTTAAT
1 TTAATTATTATTATTATTTAAT
25979456 TTAATTATTATTATTATTTA
1 TTAATTATTATTATTATTTA
25979476 CTGTTATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.61
Consensus pattern (22 bp):
TTAATTATTATTATTATTTAAT
Found at i:25979787 original size:28 final size:28
Alignment explanation
Indices: 25979756--25979888 Score: 176
Period size: 28 Copynumber: 4.8 Consensus size: 28
25979746 CTTTAGAGTA
* *
25979756 TGCCACAAAGGATTCCATTTTCTTAGTT
1 TGCCACAAAGGCTTCCATTTTCTTAGAT
*
25979784 TGCCACAAAGGCTTCCATTTTCTTAAAT
1 TGCCACAAAGGCTTCCATTTTCTTAGAT
* *
25979812 TGCCACAAATGCTTCCATTTTCATAGAT
1 TGCCACAAAGGCTTCCATTTTCTTAGAT
* *
25979840 CGCCACAAAGGCTTCCCTTTTCTTAGAT
1 TGCCACAAAGGCTTCCATTTTCTTAGAT
* * *
25979868 CGCTACAAAGGCTTCAATTTT
1 TGCCACAAAGGCTTCCATTTT
25979889 TTGGTGTGTT
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 92 1.00
ACGTcount: A:0.26, C:0.26, G:0.13, T:0.35
Consensus pattern (28 bp):
TGCCACAAAGGCTTCCATTTTCTTAGAT
Found at i:25984805 original size:14 final size:14
Alignment explanation
Indices: 25984786--25984812 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25984776 TGCATCTCCC
25984786 CATGCATGAATCTA
1 CATGCATGAATCTA
25984800 CATGCATGAATCT
1 CATGCATGAATCT
25984813 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:25985015 original size:20 final size:20
Alignment explanation
Indices: 25984990--25985044 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
25984980 TAACACATGC
25984990 ATTAAATTAAGACAAACTTA
1 ATTAAATTAAGACAAACTTA
* * *
25985010 ATTAAATCAAGACATATTTA
1 ATTAAATTAAGACAAACTTA
* *
25985030 ATTTAACTAAGACAA
1 ATTAAATTAAGACAA
25985045 GACAAATTAA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.53, C:0.11, G:0.05, T:0.31
Consensus pattern (20 bp):
ATTAAATTAAGACAAACTTA
Found at i:25990384 original size:22 final size:20
Alignment explanation
Indices: 25990353--25990406 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 20
25990343 TATATATATA
25990353 TTTTTTTTTTTAAATTCGAAT
1 TTTTTTTTTTTAAATTC-AAT
**
25990374 TTTTTTATTTTTATTTTCAAT
1 TTTTTT-TTTTTAAATTCAAT
25990395 TTTTTTTGTTTT
1 TTTTTTT-TTTT
25990407 GAACGACAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 1 0.03
21 19 0.66
22 9 0.31
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.76
Consensus pattern (20 bp):
TTTTTTTTTTTAAATTCAAT
Found at i:25992436 original size:29 final size:29
Alignment explanation
Indices: 25992403--25992471 Score: 120
Period size: 29 Copynumber: 2.4 Consensus size: 29
25992393 ATTAGTTTAG
*
25992403 GACATATTTAAAACACTTGAACTAATTAA
1 GACATATTTAAAACACTTAAACTAATTAA
*
25992432 GACATATTTAAAACACTTAAACTAATTAG
1 GACATATTTAAAACACTTAAACTAATTAA
25992461 GACATATTTAA
1 GACATATTTAA
25992472 TAATATCTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.48, C:0.13, G:0.07, T:0.32
Consensus pattern (29 bp):
GACATATTTAAAACACTTAAACTAATTAA
Found at i:25992953 original size:14 final size:14
Alignment explanation
Indices: 25992934--25992960 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
25992924 TGCATCTCCC
25992934 CATGCATGAATCTA
1 CATGCATGAATCTA
25992948 CATGCATGAATCT
1 CATGCATGAATCT
25992961 GTCCAATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (14 bp):
CATGCATGAATCTA
Found at i:25993163 original size:20 final size:20
Alignment explanation
Indices: 25993138--25993192 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 20
25993128 TAACACATGT
25993138 ATTAAATTAAGACAAACTTA
1 ATTAAATTAAGACAAACTTA
* * *
25993158 ATTAAATCAAGACATATTTA
1 ATTAAATTAAGACAAACTTA
* *
25993178 ATTTAACTAAGACAA
1 ATTAAATTAAGACAA
25993193 GACAAATGAA
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.53, C:0.11, G:0.05, T:0.31
Consensus pattern (20 bp):
ATTAAATTAAGACAAACTTA
Found at i:25997173 original size:39 final size:40
Alignment explanation
Indices: 25997073--25997257 Score: 182
Period size: 40 Copynumber: 4.7 Consensus size: 40
25997063 TCGAATGATG
* * *
25997073 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
25997112 ATCCAGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* * *
25997153 TCTGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
25997192 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
25997231 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
25997258 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 20, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
39 34 0.29
40 75 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:25997279 original size:79 final size:79
Alignment explanation
Indices: 25997126--25997280 Score: 181
Period size: 79 Copynumber: 2.0 Consensus size: 79
25997116 AGACTAAGAT
* * **
25997126 CCGAAGGCATTTGTGCGAGATACTAATTCTGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
25997191 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * * *
25997205 CCGAAGGCATTTGTGTGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
25997268 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
25997281 ATTCTGAAAG
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
78 2 0.03
79 38 0.59
80 24 0.38
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:26005179 original size:79 final size:80
Alignment explanation
Indices: 26005044--26005225 Score: 210
Period size: 79 Copynumber: 2.3 Consensus size: 80
26005034 TCGAATGATG
* * *
26005044 TCCGGGCTAAGTCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
26005108 GTGCGAGATACTA-A
66 GTGCGAGATACTATA
* * * **
26005122 TTCCGGGCTAAGCCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 -TCCGGGCTAAGCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
26005185 TTGTGCGAGTTACTATA
64 TTGTGCGAGATACTATA
* *
26005202 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATT
26005226 TGAACGAGTA
Statistics
Matches: 88, Mismatches: 11, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 68 0.77
80 19 0.22
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTATA
Found at i:26005241 original size:40 final size:41
Alignment explanation
Indices: 26005044--26005227 Score: 213
Period size: 40 Copynumber: 4.6 Consensus size: 41
26005034 TCGAATGATG
* * *
26005044 TCCGGGCTAAGT-CCGAAGGC-TTTGTGCTAAGTGACCAT-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
26005083 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-AT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26005123 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26005162 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26005203 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26005228 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 14, Indels: 11
0.83 0.09 0.07
Matches are distributed among these distances:
39 44 0.35
40 72 0.58
41 9 0.07
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:26008706 original size:1 final size:1
Alignment explanation
Indices: 26008700--26009125 Score: 429
Period size: 1 Copynumber: 426.0 Consensus size: 1
26008690 GTTGTGGAAT
* * * * *
26008700 AAAAAAAAAAAAAAATAAAAAAAAAAAAAAAAACAAAAAAAAAGAAAAGAACAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * ** * * * *
26008765 AATAAAAAAAAAGAGTAAAAAAAAGAAAAAAAAAAAAAAAAAATAAAAAAAAAAAAAAATAAATA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * *
26008830 ACAAGAAAAAAATAAAGAAAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAACAAAGAAAAAGA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* ** * * * * *
26008895 TAAAAAAAAAAAAAAAAAATCAAAAATAAAAAAAAAAGAAAAGAAAAAAAAAAAAATAACAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * ** * * * * * *
26008960 AAATAAAATAAAAAAAAAATAAATCAAGAAATAAAAAAATAAAAAAAAACAAAAAAATAAATAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
26009025 AAAAATAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * *
26009090 ATAAAAAATAAAAAAAAAAATAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
26009126 GGGTAGGGTT
Statistics
Matches: 334, Mismatches: 91, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 334 1.00
ACGTcount: A:0.89, C:0.02, G:0.04, T:0.05
Consensus pattern (1 bp):
A
Found at i:26009189 original size:1 final size:1
Alignment explanation
Indices: 26009178--26009295 Score: 101
Period size: 1 Copynumber: 118.0 Consensus size: 1
26009168 ATATAATAAT
* * * **** * * **
26009178 AAAACAAAAAAAAAAAAATAAAAAAAGAAAAAAAAAAGTGTAATAAAAAAGAAAGGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * *
26009243 AAAGAAAAAAATAAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAGAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
26009296 TGGGTTATCC
Statistics
Matches: 92, Mismatches: 25, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 92 1.00
ACGTcount: A:0.87, C:0.01, G:0.08, T:0.04
Consensus pattern (1 bp):
A
Found at i:26009200 original size:14 final size:14
Alignment explanation
Indices: 26009178--26009295 Score: 114
Period size: 14 Copynumber: 8.3 Consensus size: 14
26009168 ATATAATAAT
*
26009178 AAAACAAAAAAAA-
1 AAAAAAAAAAAAAG
*
26009191 AAAAATAAAAAAAG
1 AAAAAAAAAAAAAG
**
26009205 -AAAAAAAAAAGTG
1 AAAAAAAAAAAAAG
* *
26009218 TAATAAAAAAGAAAGG
1 -AA-AAAAAAAAAAAG
*
26009234 AAAAAAAAAAAAGAA
1 AAAAAAAAAAAA-AG
*
26009249 AAAAATAAAAAAAAA
1 AAAAA-AAAAAAAAG
26009264 AAAAAAAAAAAAAG
1 AAAAAAAAAAAAAG
26009278 AAAAAAAAAAAAAG
1 AAAAAAAAAAAAAG
26009292 AAAA
1 AAAA
26009296 TGGGTTATCC
Statistics
Matches: 87, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
13 21 0.24
14 35 0.40
15 15 0.17
16 16 0.18
ACGTcount: A:0.87, C:0.01, G:0.08, T:0.04
Consensus pattern (14 bp):
AAAAAAAAAAAAAG
Found at i:26013201 original size:46 final size:46
Alignment explanation
Indices: 26013111--26013202 Score: 105
Period size: 46 Copynumber: 2.0 Consensus size: 46
26013101 GGAAGACCAT
* * * ** *
26013111 GTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCCGTAAGA
1 GTCTGGGACATGGCATGGGCACCGAAATGAGAACTCCCACGTAAGA
*
26013157 GTCTGGGACATGGCATGGGCACCGATAAT-AGAACTCCCATGTAAGA
1 GTCTGGGACATGGCATGGGCACCGA-AATGAGAACTCCCACGTAAGA
26013203 CCATATCTGG
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
46 36 0.95
47 2 0.05
ACGTcount: A:0.26, C:0.23, G:0.33, T:0.18
Consensus pattern (46 bp):
GTCTGGGACATGGCATGGGCACCGAAATGAGAACTCCCACGTAAGA
Found at i:26015427 original size:36 final size:37
Alignment explanation
Indices: 26015366--26015456 Score: 118
Period size: 36 Copynumber: 2.5 Consensus size: 37
26015356 ATATACACTC
26015366 CAAA-GCCTTCGGTCTTAACCCGGATTATGTCACT-GCA
1 CAAATGCCTTCGGTCTTAACCCGGATTA-GT-ACTCGCA
*
26015403 -AAATGCCTTCGG-CTTAGCCCGGATTAGTACTCGCA
1 CAAATGCCTTCGGTCTTAACCCGGATTAGTACTCGCA
26015438 CAAATGCCTTCGGATCTTA
1 CAAATGCCTTCGG-TCTTA
26015457 GTCCGTACGC
Statistics
Matches: 48, Mismatches: 1, Indels: 9
0.83 0.02 0.16
Matches are distributed among these distances:
34 3 0.06
35 5 0.10
36 28 0.58
37 8 0.17
38 4 0.08
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (37 bp):
CAAATGCCTTCGGTCTTAACCCGGATTAGTACTCGCA
Found at i:26024049 original size:79 final size:81
Alignment explanation
Indices: 26023913--26024095 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
26023903 TCGAATGATG
* *
26023913 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
26023977 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
26023992 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
26024054 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
26024072 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
26024096 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:26024111 original size:40 final size:40
Alignment explanation
Indices: 26023914--26024097 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
26023904 CGAATGATGT
* * * *
26023914 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
26023954 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
26023994 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26024032 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
26024073 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
26024098 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:26024119 original size:79 final size:79
Alignment explanation
Indices: 26023966--26024120 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
26023956 GGACTAAGAT
* **
26023966 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
26024031 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
26024045 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
26024108 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
26024121 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:26045062 original size:43 final size:42
Alignment explanation
Indices: 26044943--26045075 Score: 135
Period size: 43 Copynumber: 3.2 Consensus size: 42
26044933 CTCGGTGGAT
* *
26044943 TCAGCACTTAGCAACCACC-TTAAATTCTGTGATACGGGGAA
1 TCAGCACTTAGCAACCACCTTTAAAATCAGTGATACGGGGAA
* * **
26044984 TCAGCACATAGCAACC-CCTTTCACAATCAAAGATACGGTGGAA
1 TCAGCACTTAGCAACCACCTTT-AAAATCAGTGATACGG-GGAA
* * * *
26045027 TCAACACTTAGAAACCACCTTTATACTCAGTGATACGGGGAA
1 TCAGCACTTAGCAACCACCTTTAAAATCAGTGATACGGGGAA
*
26045069 TTAGCAC
1 TCAGCAC
26045076 AAATATACGG
Statistics
Matches: 73, Mismatches: 15, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
40 2 0.03
41 17 0.23
42 20 0.27
43 29 0.40
44 5 0.07
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.23
Consensus pattern (42 bp):
TCAGCACTTAGCAACCACCTTTAAAATCAGTGATACGGGGAA
Found at i:26045121 original size:64 final size:64
Alignment explanation
Indices: 26045011--26045133 Score: 201
Period size: 64 Copynumber: 1.9 Consensus size: 64
26045001 CTTTCACAAT
26045011 CAAAGATACGGTGGAATCAACACTTAGAAACCACCTTTATACTCAGTGATACGGGGAATTAGCA
1 CAAAGATACGGTGGAATCAACACTTAGAAACCACCTTTATACTCAGTGATACGGGGAATTAGCA
* * * * *
26045075 CAAATATACGGTGGAATCAGCACTTAGCAACTACCTTTATATTCAGTGATACGGGGAAT
1 CAAAGATACGGTGGAATCAACACTTAGAAACCACCTTTATACTCAGTGATACGGGGAAT
26045134 CAACACATAG
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.24
Consensus pattern (64 bp):
CAAAGATACGGTGGAATCAACACTTAGAAACCACCTTTATACTCAGTGATACGGGGAATTAGCA
Found at i:26045145 original size:42 final size:41
Alignment explanation
Indices: 26045077--26045231 Score: 172
Period size: 42 Copynumber: 3.7 Consensus size: 41
26045067 AATTAGCACA
* * *
26045077 AATATACGGTGGAATCAGCACTTAGCAACTACCTTTATATTC
1 AATATACGGTGGAATCAACACTTAGCAAC-ACCTTTACAATC
* *
26045119 AGTGATACGG-GGAATCAACACATAGCAAC-CCTTTCACAATC
1 AAT-ATACGGTGGAATCAACACTTAGCAACACCTTT-ACAATC
*
26045160 AAATATACGGTGGAATCAACACTTAGCAACCACCTTTAGAATC
1 -AATATACGGTGGAATCAACACTTAGCAA-CACCTTTACAATC
*
26045203 AATAATTCGG-GGAATCAACACTTAGCAAC
1 AAT-ATACGGTGGAATCAACACTTAGCAAC
26045232 CCCTCAGGGA
Statistics
Matches: 97, Mismatches: 9, Indels: 15
0.80 0.07 0.12
Matches are distributed among these distances:
40 5 0.05
41 11 0.11
42 59 0.61
43 17 0.18
44 5 0.05
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.24
Consensus pattern (41 bp):
AATATACGGTGGAATCAACACTTAGCAACACCTTTACAATC
Found at i:26045214 original size:148 final size:148
Alignment explanation
Indices: 26044935--26045217 Score: 442
Period size: 148 Copynumber: 1.9 Consensus size: 148
26044925 ATCCGTTACT
* * *
26044935 CGGTGGATTCAGCACTTAGCAACCACCTTAAATTCTGTGATACGGGGAATCAGCACATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTAAATTCAGTGATACGGGGAATCAACACATAGCAACC
* * * *
26045000 CCTTTCACAATCAAAGATACGGTGGAATCAACACTTAGAAACCACCTTTATACTCAGTGATACGG
66 CCTTTCACAATCAAAGATACGGTGGAATCAACACTTAGAAACCACCTTTAGAATCAATAATACGG
26045065 GGAATTAGCACAAATATA
131 GGAATTAGCACAAATATA
* *
26045083 CGGTGGAATCAGCACTTAGCAACTACCTTTATATTCAGTGATACGGGGAATCAACACATAGCAA-
1 CGGTGGAATCAGCACTTAGCAACCACC-TTAAATTCAGTGATACGGGGAATCAACACATAGCAAC
* * *
26045147 CCCTTTCACAATCAAATATACGGTGGAATCAACACTTAGCAACCACCTTTAGAATCAATAATTCG
65 CCCTTTCACAATCAAAGATACGGTGGAATCAACACTTAGAAACCACCTTTAGAATCAATAATACG
26045212 GGGAAT
130 GGGAAT
26045218 CAACACTTAG
Statistics
Matches: 122, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
148 89 0.73
149 33 0.27
ACGTcount: A:0.35, C:0.23, G:0.18, T:0.24
Consensus pattern (148 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTAAATTCAGTGATACGGGGAATCAACACATAGCAACC
CCTTTCACAATCAAAGATACGGTGGAATCAACACTTAGAAACCACCTTTAGAATCAATAATACGG
GGAATTAGCACAAATATA
Found at i:26045216 original size:84 final size:84
Alignment explanation
Indices: 26045075--26045233 Score: 246
Period size: 84 Copynumber: 1.9 Consensus size: 84
26045065 GGAATTAGCA
* * * * * *
26045075 CAAATATACGGTGGAATCAGCACTTAGCAACTACCTTTATATTCAGTGATACGGGGAATCAACAC
1 CAAATATACGGTGGAATCAACACTTAGCAACCACCTTTAGAATCAATAATACGGGGAATCAACAC
26045140 ATAGCAACCCTTTCACAAT
66 ATAGCAACCCTTTCACAAT
*
26045159 CAAATATACGGTGGAATCAACACTTAGCAACCACCTTTAGAATCAATAATTCGGGGAATCAACAC
1 CAAATATACGGTGGAATCAACACTTAGCAACCACCTTTAGAATCAATAATACGGGGAATCAACAC
*
26045224 TTAGCAACCC
66 ATAGCAACCC
26045234 CTCAGGGAAT
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
84 67 1.00
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.23
Consensus pattern (84 bp):
CAAATATACGGTGGAATCAACACTTAGCAACCACCTTTAGAATCAATAATACGGGGAATCAACAC
ATAGCAACCCTTTCACAAT
Found at i:26045241 original size:26 final size:26
Alignment explanation
Indices: 26045212--26045261 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
26045202 CAATAATTCG
26045212 GGGAATCAACACTTAGCAACCCCTCA
1 GGGAATCAACACTTAGCAACCCCTCA
**
26045238 GGGAATCTGCACTTAGCAACCCCT
1 GGGAATCAACACTTAGCAACCCCT
26045262 TACATTCAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.34, G:0.18, T:0.18
Consensus pattern (26 bp):
GGGAATCAACACTTAGCAACCCCTCA
Found at i:26048398 original size:42 final size:42
Alignment explanation
Indices: 26048318--26048399 Score: 121
Period size: 42 Copynumber: 2.0 Consensus size: 42
26048308 CGTTTTCTCT
* **
26048318 ATGCCATAGTCCAACTATGGTCTTACACATATTTACATATTG
1 ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
26048360 ATGCCATAGCCCAACTATGGTCTTACACAGTA-GCACATAT
1 ATGCCATAGCCCAACTATGGTCTTACACA-TATGCACATAT
26048400 CACACCAATG
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
42 34 0.94
43 2 0.06
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.30
Consensus pattern (42 bp):
ATGCCATAGCCCAACTATGGTCTTACACATATGCACATATTG
Found at i:26051189 original size:84 final size:85
Alignment explanation
Indices: 26050913--26051234 Score: 513
Period size: 85 Copynumber: 3.8 Consensus size: 85
26050903 ATCCGTTACT
* *
26050913 CGGTGGATTCAGCACTTAGCAACCACC-TTAAATTCAATGATACGGGGAATCAGCACATAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAGCACATAGCAAC
* *
26050977 CCCTTTCACAATCAAAGAAA
66 CCCTTTCACAATCAAATATA
* *
26050997 CGGTGGAATCAGCACTTAGCAACAACCTTTATATTCAGTGATACGGGGAATCAGCACATAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAGCACATAGCAAC
*
26051062 CCCTTTCACAATCAATTATA
66 CCCTTTCACAATCAAATATA
26051082 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAGCACATAGCAA-
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAGCACATAGCAAC
26051146 CCCTTTCACAATCAAATATA
66 CCCTTTCACAATCAAATATA
* * * * * *
26051166 CGGTGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCGGGGAATCAACACTTAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAGCACATAGCAAC
26051231 CCCT
66 CCCT
26051235 CGGGGAATCT
Statistics
Matches: 220, Mismatches: 16, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
84 102 0.46
85 118 0.54
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (85 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAGCACATAGCAAC
CCCTTTCACAATCAAATATA
Found at i:26051196 original size:169 final size:169
Alignment explanation
Indices: 26050913--26051234 Score: 520
Period size: 169 Copynumber: 1.9 Consensus size: 169
26050903 ATCCGTTACT
*
26050913 CGGTGGATTCAGCACTTAGCAACCACCTTAAATTCAATGATACGGGGAATCAGCACATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTAAATTCAATGATACGGGGAATCAGCACATAGCAACC
* * * *
26050978 CCTTTCACAATCAAAGAAACGGTGGAATCAGCACTTAGCAACAACCTTTATATTCAGTGATACGG
66 CCTTTCACAATCAAAGAAACGGTGGAATCAGCACTTAGCAACAACCTTTAGAATCAATAATACGG
*
26051043 GGAATCAGCACATAGCAACCCCTTTCACAATCAATTATA
131 GGAATCAACACATAGCAACCCCTTTCACAATCAATTATA
*
26051082 CGGTGGAATCAGCACTTAGCAACCACCTTTATATTCAATGATACGGGGAATCAGCACATAGCAA-
1 CGGTGGAATCAGCACTTAGCAACCACC-TTAAATTCAATGATACGGGGAATCAGCACATAGCAAC
* * * *
26051146 CCCTTTCACAATCAAATATACGGTGGAATCAGCACTTAGCAACCACCTTTAGAATCAATAATTCG
65 CCCTTTCACAATCAAAGAAACGGTGGAATCAGCACTTAGCAACAACCTTTAGAATCAATAATACG
*
26051211 GGGAATCAACACTTAGCAACCCCT
130 GGGAATCAACACATAGCAACCCCT
26051235 CGGGGAATCT
Statistics
Matches: 140, Mismatches: 12, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
169 105 0.75
170 35 0.25
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (169 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTAAATTCAATGATACGGGGAATCAGCACATAGCAACC
CCTTTCACAATCAAAGAAACGGTGGAATCAGCACTTAGCAACAACCTTTAGAATCAATAATACGG
GGAATCAACACATAGCAACCCCTTTCACAATCAATTATA
Found at i:26051237 original size:26 final size:26
Alignment explanation
Indices: 26051208--26051260 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
26051198 AATCAATAAT
26051208 TCGGGGAATCAACACTTAGCAACCCC
1 TCGGGGAATCAACACTTAGCAACCCC
*
26051234 TCGGGGAATCTACACTTAGCAACCCC
1 TCGGGGAATCAACACTTAGCAACCCC
26051260 T
1 T
26051261 TTTTGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.34, G:0.19, T:0.19
Consensus pattern (26 bp):
TCGGGGAATCAACACTTAGCAACCCC
Found at i:26051667 original size:30 final size:30
Alignment explanation
Indices: 26051633--26051691 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
26051623 TCCTTAACTC
26051633 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
26051663 AAACTTTTGCATATTTACATTTTTGCCCC
1 AAACTTTGGCAAAATTACAATTTTGCCCC
26051692 AAAGCTCGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.08, T:0.39
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:26066320 original size:21 final size:21
Alignment explanation
Indices: 26066296--26066335 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
26066286 TTCATTGGAG
26066296 GGGAGATCAGAGCCGTTTGAA
1 GGGAGATCAGAGCCGTTTGAA
* * *
26066317 GGGATATTAGAGCTGTTTG
1 GGGAGATCAGAGCCGTTTG
26066336 GATCTCGATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.25, C:0.10, G:0.38, T:0.28
Consensus pattern (21 bp):
GGGAGATCAGAGCCGTTTGAA
Found at i:26077247 original size:19 final size:20
Alignment explanation
Indices: 26077215--26077252 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
26077205 CAAGCTGACT
26077215 TTAGCTCAATTTCAGCTCCC
1 TTAGCTCAATTTCAGCTCCC
26077235 TTAGCTC-ATTTCAGCTCC
1 TTAGCTCAATTTCAGCTCC
26077253 AATCAGCTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.18, C:0.34, G:0.11, T:0.37
Consensus pattern (20 bp):
TTAGCTCAATTTCAGCTCCC
Found at i:26077260 original size:20 final size:19
Alignment explanation
Indices: 26077217--26077262 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
26077207 AGCTGACTTT
* *
26077217 AGCTCAATTTCAGCTCCCTT
1 AGCTC-ATTTCAGCTCCATC
26077237 AGCTCATTTCAGCTCCAATC
1 AGCTCATTTCAGCTCC-ATC
26077257 AGCTCA
1 AGCTCA
26077263 CTTGAGCTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
19 11 0.48
20 12 0.52
ACGTcount: A:0.24, C:0.35, G:0.11, T:0.30
Consensus pattern (19 bp):
AGCTCATTTCAGCTCCATC
Found at i:26080028 original size:13 final size:14
Alignment explanation
Indices: 26080002--26080052 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 14
26079992 CATAGTTTTC
*
26080002 TTATATTATTAATA
1 TTATATTATAAATA
26080016 TTAT-TTATAAATA
1 TTATATTATAAATA
* **
26080029 TTATAATAATGTATA
1 TTAT-ATTATAAATA
26080044 TTATATTAT
1 TTATATTAT
26080053 TATGATATAA
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
13 12 0.40
14 8 0.27
15 10 0.33
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (14 bp):
TTATATTATAAATA
Found at i:26080799 original size:14 final size:15
Alignment explanation
Indices: 26080779--26080821 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
26080769 TTAGAGTGTA
26080779 TATGAATTTTATATG
1 TATGAATTTTATATG
*
26080794 -ATGAATTTAAT-TG
1 TATGAATTTTATATG
26080807 TATGAATTTTCATAT
1 TATGAATTTT-ATAT
26080822 TAATAGCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
13 2 0.09
14 18 0.78
15 2 0.09
16 1 0.04
ACGTcount: A:0.35, C:0.02, G:0.12, T:0.51
Consensus pattern (15 bp):
TATGAATTTTATATG
Found at i:26081066 original size:41 final size:41
Alignment explanation
Indices: 26080984--26081133 Score: 174
Period size: 41 Copynumber: 3.7 Consensus size: 41
26080974 TCGGGCTCTG
* * * * * * *
26080984 TGCCTAGCAGGCTTTATGTCGATGAATTATAGCAGGTTTTA
1 TGCCTAGCAGGCTTCATGCCGGTGTATCATATCAGGCTTTA
*
26081025 TGCCTAGCAGGCTTCATGCCGGTGTACCATATCAGGCTTTA
1 TGCCTAGCAGGCTTCATGCCGGTGTATCATATCAGGCTTTA
* * * *
26081066 TGCCTAGCAGGCTTCGTGCTGGTGTATCATATCTGGCTTTG
1 TGCCTAGCAGGCTTCATGCCGGTGTATCATATCAGGCTTTA
* *
26081107 TGCCTAGAAGGCTTTATGCCGGTGTAT
1 TGCCTAGCAGGCTTCATGCCGGTGTAT
26081134 TTTAATAAGC
Statistics
Matches: 92, Mismatches: 17, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
41 92 1.00
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.34
Consensus pattern (41 bp):
TGCCTAGCAGGCTTCATGCCGGTGTATCATATCAGGCTTTA
Found at i:26084903 original size:20 final size:21
Alignment explanation
Indices: 26084874--26084968 Score: 108
Period size: 20 Copynumber: 4.7 Consensus size: 21
26084864 ATGGGATTTG
*
26084874 CACTTCGGTGCCCCTGTTAT-
1 CACTTTGGTGCCCCTGTTATA
**
26084894 CACTTTGGTGCCCCTACTAT-
1 CACTTTGGTGCCCCTGTTATA
*
26084914 CACTTTGGTGCCCCTGTT-TG
1 CACTTTGGTGCCCCTGTTATA
*
26084934 CACTTCGGTGCCCCTG-TATA
1 CACTTTGGTGCCCCTGTTATA
*
26084954 CACTTTGGTGTCCCT
1 CACTTTGGTGCCCCT
26084969 ATTCGCACTA
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
19 2 0.03
20 62 0.97
ACGTcount: A:0.11, C:0.34, G:0.20, T:0.36
Consensus pattern (21 bp):
CACTTTGGTGCCCCTGTTATA
Found at i:26084929 original size:40 final size:40
Alignment explanation
Indices: 26084874--26085024 Score: 137
Period size: 40 Copynumber: 3.8 Consensus size: 40
26084864 ATGGGATTTG
* *
26084874 CACTTCGGTGCCCCTGTTAT-CACTTTGGTGCCCCTACTAT-
1 CACTTTGGTGCCCCTGTT-TGCACTTCGGTGCCCCT-CTATA
*
26084914 CACTTTGGTGCCCCTGTTTGCACTTCGGTGCCCCTGTATA
1 CACTTTGGTGCCCCTGTTTGCACTTCGGTGCCCCTCTATA
* * * * * * * *
26084954 CACTTTGGTGTCCCTATTCGCACTACGGTGCCCTTGTTTG
1 CACTTTGGTGCCCCTGTTTGCACTTCGGTGCCCCTCTATA
* *
26084994 CACATTT-GTGCCCCTGTCTGCACCTCGGTGC
1 CAC-TTTGGTGCCCCTGTTTGCACTTCGGTGC
26085025 TCCTGTTATG
Statistics
Matches: 92, Mismatches: 16, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
39 4 0.04
40 85 0.92
41 3 0.03
ACGTcount: A:0.11, C:0.34, G:0.21, T:0.34
Consensus pattern (40 bp):
CACTTTGGTGCCCCTGTTTGCACTTCGGTGCCCCTCTATA
Found at i:26084963 original size:60 final size:60
Alignment explanation
Indices: 26084870--26085010 Score: 178
Period size: 60 Copynumber: 2.4 Consensus size: 60
26084860 TTGTATGGGA
* **
26084870 TTTGCACTTCGGTGCCCCTGTTATCACTTTGGTGCCCCTACTATCACTTTGGTGCCCCTG
1 TTTGCACTTCGGTGCCCCTGTTATCACTTTGGTGCCCCTACTAGCACTACGGTGCCCCTG
* * * *
26084930 TTTGCACTTCGGTGCCCCTG-TATACACTTTGGTGTCCCTATTCGCACTACGGTGCCCTTG
1 TTTGCACTTCGGTGCCCCTGTTAT-CACTTTGGTGCCCCTACTAGCACTACGGTGCCCCTG
*
26084990 TTTGCACATT-TGTGCCCCTGT
1 TTTGCAC-TTCGGTGCCCCTGT
26085011 CTGCACCTCG
Statistics
Matches: 70, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
59 3 0.04
60 65 0.93
61 2 0.03
ACGTcount: A:0.11, C:0.32, G:0.21, T:0.37
Consensus pattern (60 bp):
TTTGCACTTCGGTGCCCCTGTTATCACTTTGGTGCCCCTACTAGCACTACGGTGCCCCTG
Found at i:26085024 original size:20 final size:20
Alignment explanation
Indices: 26084870--26085036 Score: 88
Period size: 20 Copynumber: 8.3 Consensus size: 20
26084860 TTGTATGGGA
*
26084870 TTTGCACTTCGGTGCCCCTG
1 TTTGCACCTCGGTGCCCCTG
* * *
26084890 TTAT-CACTTTGGTGCCCCTAC
1 TT-TGCACCTCGGTGCCCCT-G
* * *
26084911 TAT-CACTTTGGTGCCCCTG
1 TTTGCACCTCGGTGCCCCTG
*
26084930 TTTGCACTTCGGTGCCCCTG
1 TTTGCACCTCGGTGCCCCTG
* * * * * *
26084950 TATACACTTTGGTGTCCCTA
1 TTTGCACCTCGGTGCCCCTG
* *
26084970 TTCGCA-CTACGGTGCCCTTG
1 TTTGCACCT-CGGTGCCCCTG
* **
26084990 TTTGCACATTTGTGCCCCTG
1 TTTGCACCTCGGTGCCCCTG
* *
26085010 TCTGCACCTCGGTGCTCCTG
1 TTTGCACCTCGGTGCCCCTG
26085030 TTATGCA
1 TT-TGCA
26085037 TCTGTGATGC
Statistics
Matches: 111, Mismatches: 30, Indels: 11
0.73 0.20 0.07
Matches are distributed among these distances:
19 3 0.03
20 101 0.91
21 7 0.06
ACGTcount: A:0.11, C:0.32, G:0.21, T:0.36
Consensus pattern (20 bp):
TTTGCACCTCGGTGCCCCTG
Found at i:26086469 original size:20 final size:21
Alignment explanation
Indices: 26086438--26086602 Score: 139
Period size: 20 Copynumber: 8.2 Consensus size: 21
26086428 GTACGGGATT
*
26086438 TGCACTTCGGTGCCCCTGTTA
1 TGCACTTTGGTGCCCCTGTTA
**
26086459 T-CACTTTGGTGCCCCTACTA
1 TGCACTTTGGTGCCCCTGTTA
26086479 T-CACTTTGGTGCCCCTGTT-
1 TGCACTTTGGTGCCCCTGTTA
*
26086498 TGCACTTCGGTGCCCCTG-TA
1 TGCACTTTGGTGCCCCTGTTA
* * *
26086518 TACACTTTGGTGTCCCTATT-
1 TGCACTTTGGTGCCCCTGTTA
* **
26086538 CGCACTACGGTGCCCCTGTT-
1 TGCACTTTGGTGCCCCTGTTA
*
26086558 TGCACATTT-GTGCCCCTG-TC
1 TGCAC-TTTGGTGCCCCTGTTA
* * *
26086578 TGCACCTCGGTGCTCCTGTTA
1 TGCACTTTGGTGCCCCTGTTA
26086599 TGCA
1 TGCA
26086603 TCTGTGATGC
Statistics
Matches: 114, Mismatches: 23, Indels: 14
0.75 0.15 0.09
Matches are distributed among these distances:
19 4 0.04
20 102 0.89
21 8 0.07
ACGTcount: A:0.11, C:0.33, G:0.21, T:0.35
Consensus pattern (21 bp):
TGCACTTTGGTGCCCCTGTTA
Found at i:26086529 original size:60 final size:60
Alignment explanation
Indices: 26086436--26086576 Score: 187
Period size: 60 Copynumber: 2.4 Consensus size: 60
26086426 TTGTACGGGA
* **
26086436 TTTGCACTTCGGTGCCCCTGTTATCACTTTGGTGCCCCTACTATCACTTTGGTGCCCCTG
1 TTTGCACTTCGGTGCCCCTGTTATCACTTTGGTGCCCCTACTAGCACTACGGTGCCCCTG
* * *
26086496 TTTGCACTTCGGTGCCCCTG-TATACACTTTGGTGTCCCTATTCGCACTACGGTGCCCCTG
1 TTTGCACTTCGGTGCCCCTGTTAT-CACTTTGGTGCCCCTACTAGCACTACGGTGCCCCTG
*
26086556 TTTGCACATT-TGTGCCCCTGT
1 TTTGCAC-TTCGGTGCCCCTGT
26086577 CTGCACCTCG
Statistics
Matches: 71, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
59 3 0.04
60 66 0.93
61 2 0.03
ACGTcount: A:0.11, C:0.33, G:0.21, T:0.36
Consensus pattern (60 bp):
TTTGCACTTCGGTGCCCCTGTTATCACTTTGGTGCCCCTACTAGCACTACGGTGCCCCTG
Found at i:26088216 original size:68 final size:69
Alignment explanation
Indices: 26088016--26088276 Score: 267
Period size: 69 Copynumber: 3.8 Consensus size: 69
26088006 TGATGAATTG
* * * * *
26088016 TAAAATTAAGGTTCGCAGGCAAAAGAGCC-ACGACCTCCAGAACAGTTAGCGAGAGCAAAGCTCT
1 TAAAACTAAGGTTCGCAAGC-GAAGAGCCGA-GACCTCCAAAACAGTTAGCGAGAGCAAAGCTCC
*
26088080 CAGCTT
64 CAGCTA
** * * *
26088086 TAAAACTAAGGTTCGCAAGTAAAGAGCTGAGACCTCCAAAACAATTAGTGAGAGCAAAGCTCCCA
1 TAAAACTAAGGTTCGCAAGCGAAGAGCCGAGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCA
26088151 GCTA
66 GCTA
* * * *
26088155 TAAAATTAAGGTTCACAAGCGAAGATCCGCA-A-CTCCAAAATAGTTAGCGAGAGCAAAGCTCCC
1 TAAAACTAAGGTTCGCAAGCGAAGAGCCG-AGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCC
* *
26088218 AACTG
65 AGCTA
* * * * * *
26088223 TAAAACCAAGGTTCGCAGGCGAAGAGTCGCGACCTCCAACACAGTTAGCAAGAG
1 TAAAACTAAGGTTCGCAAGCGAAGAGCCGAGACCTCCAAAACAGTTAGCGAGAG
26088277 AACTAAGGTT
Statistics
Matches: 157, Mismatches: 30, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
68 55 0.35
69 83 0.53
70 19 0.12
ACGTcount: A:0.38, C:0.24, G:0.22, T:0.16
Consensus pattern (69 bp):
TAAAACTAAGGTTCGCAAGCGAAGAGCCGAGACCTCCAAAACAGTTAGCGAGAGCAAAGCTCCCA
GCTA
Found at i:26091798 original size:14 final size:14
Alignment explanation
Indices: 26091779--26091805 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26091769 TACATTGGGC
26091779 AGATTCATGCATGT
1 AGATTCATGCATGT
26091793 AGATTCATGCATG
1 AGATTCATGCATG
26091806 GGTAGATGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.22, T:0.33
Consensus pattern (14 bp):
AGATTCATGCATGT
Found at i:26096454 original size:21 final size:20
Alignment explanation
Indices: 26096408--26096455 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 20
26096398 AATTATATGA
*
26096408 ATATATTAAATATTTAATTTT
1 ATAT-TTAAATATTTAATGTT
26096429 ATATTTAAATTATTT-ATGTT
1 ATATTTAAA-TATTTAATGTT
26096449 AGTATTT
1 A-TATTT
26096456 TACATCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 10 0.42
21 14 0.58
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (20 bp):
ATATTTAAATATTTAATGTT
Found at i:26096908 original size:26 final size:25
Alignment explanation
Indices: 26096842--26096948 Score: 134
Period size: 25 Copynumber: 4.4 Consensus size: 25
26096832 TCTTTTTAAA
26096842 AATTTAAATTTGTTTGTTTAAGAAT
1 AATTTAAATTTGTTTGTTTAAGAAT
*
26096867 AATTTAAATTTGTTTGTTTTAGAAT
1 AATTTAAATTTGTTTGTTTAAGAAT
*
26096892 AATTTAAACTTTATTTGTTTAAGAAT
1 AATTTAAA-TTTGTTTGTTTAAGAAT
* *
26096918 AATCT-AA--T-TCT-TTTAAGAAT
1 AATTTAAATTTGTTTGTTTAAGAAT
26096938 AATTTAAATTT
1 AATTTAAATTT
26096949 TAGTTTTTAA
Statistics
Matches: 72, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
20 13 0.18
21 4 0.06
22 1 0.01
23 1 0.01
25 34 0.47
26 19 0.26
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.51
Consensus pattern (25 bp):
AATTTAAATTTGTTTGTTTAAGAAT
Found at i:26096956 original size:25 final size:24
Alignment explanation
Indices: 26096842--26096963 Score: 119
Period size: 25 Copynumber: 5.0 Consensus size: 24
26096832 TCTTTTTAAA
26096842 AATTTAAATTTGTTTGTTTAAGAAT
1 AATTTAAATTTG-TTGTTTAAGAAT
*
26096867 AATTTAAATTTGTTTGTTTTAGAAT
1 AATTTAAATTTG-TTGTTTAAGAAT
*
26096892 AATTTAAACTTTATTTGTTTAAGAAT
1 AATTTAAA-TTT-GTTGTTTAAGAAT
* *
26096918 AATCT-AA-TT-CT-TTTAAGAAT
1 AATTTAAATTTGTTGTTTAAGAAT
26096938 AATTTAAATTTTAGTT-TTTAAGAAT
1 AATTTAAA-TTT-GTTGTTTAAGAAT
26096963 A
1 A
26096964 CCAATAAAAG
Statistics
Matches: 83, Mismatches: 7, Indels: 14
0.80 0.07 0.13
Matches are distributed among these distances:
20 13 0.16
21 3 0.04
23 4 0.05
25 45 0.54
26 18 0.22
ACGTcount: A:0.38, C:0.02, G:0.09, T:0.51
Consensus pattern (24 bp):
AATTTAAATTTGTTGTTTAAGAAT
Found at i:26097592 original size:89 final size:88
Alignment explanation
Indices: 26097399--26097634 Score: 242
Period size: 89 Copynumber: 2.6 Consensus size: 88
26097389 TAAGGGTGCA
* * ** * *
26097399 AAAAAACCCTCAAACTTTTTTAAAAAAAAAATAATTAAGCTCTTGTTTTTTTTCTTTACACTCAT
1 AAAAAACCCTCAAACATTTTT--AAAAAAAACAATTAAGC-C--CCTATTTTTCTTTACACTCAA
*
26097464 TTGGGTAGTTCAACTTTCAAAATACATC
61 TTGGGTACTTCAACTTTCAAAATACATC
* *
26097492 AAAAAAGCCCTCAAACCTTTTTAAGAAAAAACAATTAAGCCCCTATTTTT-TTTGCACTCAATTG
1 AAAAAA-CCCTCAAACATTTTTAA-AAAAAACAATTAAGCCCCTATTTTTCTTTACACTCAATTG
*
26097556 GGTACTTGAACTTTCAAAA-AGCATC
64 GGTACTTCAACTTTCAAAATA-CATC
* * * * *
26097581 AAAAAGACCCTCAAACATTTTCAAAAAAAGCAACTAAGCCCCTGTTTTTATTTA
1 AAAAA-ACCCTCAAACATTTTTAAAAAAAACAATTAAGCCCCTATTTTTCTTTA
26097635 AAATTAGAAA
Statistics
Matches: 123, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
88 23 0.19
89 56 0.46
90 7 0.06
92 3 0.02
93 20 0.16
94 14 0.11
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (88 bp):
AAAAAACCCTCAAACATTTTTAAAAAAAACAATTAAGCCCCTATTTTTCTTTACACTCAATTGGG
TACTTCAACTTTCAAAATACATC
Found at i:26097680 original size:27 final size:27
Alignment explanation
Indices: 26097644--26097702 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
26097634 AAAATTAGAA
* *
26097644 AAAATTTATAAAAATCGTAAAAAA-TAT
1 AAAATATATAAAAAT-ATAAAAAATTAT
*
26097671 AAAATATATAGAAATATAAAAAATTAT
1 AAAATATATAAAAATATAAAAAATTAT
26097698 AAAAT
1 AAAAT
26097703 TTTATAAAGT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.66, C:0.02, G:0.03, T:0.29
Consensus pattern (27 bp):
AAAATATATAAAAATATAAAAAATTAT
Found at i:26097702 original size:17 final size:16
Alignment explanation
Indices: 26097664--26097702 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 16
26097654 AAAATCGTAA
*
26097664 AAAATATAAAATATAT
1 AAAATATAAAAAATAT
26097680 AGAAATATAAAAAATTAT
1 A-AAATATAAAAAA-TAT
26097698 AAAAT
1 AAAAT
26097703 TTTATAAAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 15 0.75
18 4 0.20
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (16 bp):
AAAATATAAAAAATAT
Found at i:26097936 original size:12 final size:13
Alignment explanation
Indices: 26097912--26097937 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26097902 TTTTATAAAA
26097912 TTTTACAATTTTT
1 TTTTACAATTTTT
26097925 TTTTACAATTTTT
1 TTTTACAATTTTT
26097938 ATAAAAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.00, T:0.69
Consensus pattern (13 bp):
TTTTACAATTTTT
Found at i:26097992 original size:27 final size:30
Alignment explanation
Indices: 26097948--26098016 Score: 92
Period size: 27 Copynumber: 2.4 Consensus size: 30
26097938 ATAAAAAAAA
*
26097948 TTTCTAAATTTTCA-TAAAATTT-A-AATT
1 TTTCTAAATTTTTATTAAAATTTAATAATT
*
26097975 TTT-TATATTTTTATTAAAATTTAATAATT
1 TTTCTAAATTTTTATTAAAATTTAATAATT
26098004 TTTCTAAATTTTT
1 TTTCTAAATTTTT
26098017 TTATTTTTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 8 0.23
27 11 0.31
28 1 0.03
29 7 0.20
30 8 0.23
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.59
Consensus pattern (30 bp):
TTTCTAAATTTTTATTAAAATTTAATAATT
Found at i:26098024 original size:19 final size:19
Alignment explanation
Indices: 26097969--26098035 Score: 57
Period size: 19 Copynumber: 3.5 Consensus size: 19
26097959 TCATAAAATT
26097969 TAAATTTTTTATATTTTTAT-
1 TAAATTTTTT-TATTTTT-TC
* ** *
26097989 TAAAATTTAATAATTTTTC
1 TAAATTTTTTTATTTTTTC
26098008 TAAATTTTTTTATTTTTTTC
1 TAAATTTTTTTA-TTTTTTC
26098028 T-AATTTTT
1 TAAATTTTT
26098036 AGTAAGAGCA
Statistics
Matches: 37, Mismatches: 8, Indels: 5
0.74 0.16 0.10
Matches are distributed among these distances:
18 1 0.03
19 22 0.59
20 14 0.38
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (19 bp):
TAAATTTTTTTATTTTTTC
Found at i:26099112 original size:22 final size:22
Alignment explanation
Indices: 26099066--26099118 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
26099056 GCCCGGAGAA
*
26099066 AAAATTAAAATAATTTTTTTATT
1 AAAATTAAAATAA-TTTGTTATT
26099089 AAAATTAAAACTAA-TTGTTATT
1 AAAATTAAAA-TAATTTGTTATT
26099111 AAAATTAA
1 AAAATTAA
26099119 TTGTTAGTAA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 15 0.54
23 10 0.36
24 3 0.11
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (22 bp):
AAAATTAAAATAATTTGTTATT
Found at i:26099113 original size:16 final size:16
Alignment explanation
Indices: 26099092--26099130 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
26099082 TTTTATTAAA
26099092 ATTAAAACTAATTGTT
1 ATTAAAACTAATTGTT
*
26099108 ATTAAAATTAATTGTT
1 ATTAAAACTAATTGTT
*
26099124 AGTAAAA
1 ATTAAAA
26099131 TCATCAAATT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.49, C:0.03, G:0.08, T:0.41
Consensus pattern (16 bp):
ATTAAAACTAATTGTT
Found at i:26099218 original size:9 final size:9
Alignment explanation
Indices: 26099206--26099267 Score: 92
Period size: 9 Copynumber: 7.1 Consensus size: 9
26099196 ATTATCAAAT
*
26099206 TATTAACTG
1 TATTAATTG
26099215 TATTAATTG
1 TATTAATTG
26099224 TATTAATTG
1 TATTAATTG
26099233 --TTAATTG
1 TATTAATTG
*
26099240 AATTAATTG
1 TATTAATTG
26099249 TATTAATTG
1 TATTAATTG
26099258 TATTAATTG
1 TATTAATTG
26099267 T
1 T
26099268 TATAACAAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
7 7 0.14
9 42 0.86
ACGTcount: A:0.34, C:0.02, G:0.11, T:0.53
Consensus pattern (9 bp):
TATTAATTG
Found at i:26099224 original size:102 final size:101
Alignment explanation
Indices: 26099114--26099299 Score: 243
Period size: 102 Copynumber: 1.8 Consensus size: 101
26099104 TGTTATTAAA
* *
26099114 ATTAATTGTTAGTAAAATCATCAAATT-ATTAATTG-A-TAATTGTATTAATTGTTGTAATAAAA
1 ATTAATTG-TA-T-AAATCAT-AAATTAATTAATTGTATTAATTGTATTAATTGTTATAACAAAA
26099176 TCTAACATTTGATTAGTAAAATTATCAAATTATTAACTGT
62 TCTAACATTTGATTAGTAAAATTATCAAATTATTAACTGT
* ** *
26099216 ATTAATTGTATTAATTGTTAATTGAATTAATTGTATTAATTGTATTAATTGTTATAACAAAATCT
1 ATTAATTGTATAAATCATAAATT-AATTAATTGTATTAATTGTATTAATTGTTATAACAAAATCT
*
26099281 AATATTTGATTAGTAAAAT
65 AACATTTGATTAGTAAAAT
26099300 AAACTTGATG
Statistics
Matches: 73, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
98 4 0.05
99 4 0.05
100 9 0.12
101 3 0.04
102 53 0.73
ACGTcount: A:0.41, C:0.04, G:0.09, T:0.45
Consensus pattern (101 bp):
ATTAATTGTATAAATCATAAATTAATTAATTGTATTAATTGTATTAATTGTTATAACAAAATCTA
ACATTTGATTAGTAAAATTATCAAATTATTAACTGT
Found at i:26099231 original size:25 final size:25
Alignment explanation
Indices: 26099203--26099256 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
26099193 AAAATTATCA
*
26099203 AATTATTAACTGTATTAATTGTATT
1 AATTATTAACTGAATTAATTGTATT
* *
26099228 AATTGTTAATTGAATTAATTGTATT
1 AATTATTAACTGAATTAATTGTATT
26099253 AATT
1 AATT
26099257 GTATTAATTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.37, C:0.02, G:0.09, T:0.52
Consensus pattern (25 bp):
AATTATTAACTGAATTAATTGTATT
Found at i:26099364 original size:68 final size:68
Alignment explanation
Indices: 26099255--26099390 Score: 245
Period size: 68 Copynumber: 2.0 Consensus size: 68
26099245 ATTGTATTAA
* *
26099255 TTGTATTAATTGTTATAACAAAATCTAATATTTGATTAGTAAAATAAACTTGATGTTTTATTATT
1 TTGTATTAATTGTTATAACAAAATCTAACATTTGATTAGTAAAACAAACTTGATGTTTTATTATT
26099320 ATT
66 ATT
*
26099323 TTGTATTAATTGTTGTAACAAAATCTAACATTTGATTAGTAAAACAAACTTGATGTTTTATTATT
1 TTGTATTAATTGTTATAACAAAATCTAACATTTGATTAGTAAAACAAACTTGATGTTTTATTATT
26099388 ATT
66 ATT
26099391 ATTATTTTAT
Statistics
Matches: 65, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
68 65 1.00
ACGTcount: A:0.38, C:0.06, G:0.10, T:0.47
Consensus pattern (68 bp):
TTGTATTAATTGTTATAACAAAATCTAACATTTGATTAGTAAAACAAACTTGATGTTTTATTATT
ATT
Found at i:26099388 original size:3 final size:3
Alignment explanation
Indices: 26099380--26099410 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
26099370 ACTTGATGTT
26099380 TTA TTA TTA TTA TTA TT- TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26099411 TTGTAACAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.07
3 25 0.93
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (3 bp):
TTA
Found at i:26099400 original size:17 final size:17
Alignment explanation
Indices: 26099378--26099410 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
26099368 AAACTTGATG
26099378 TTTTATTATTATTATTA
1 TTTTATTATTATTATTA
26099395 TTTTATTATTATTATT
1 TTTTATTATTATTATT
26099411 TTGTAACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTATTATTATTATTA
Found at i:26099402 original size:14 final size:14
Alignment explanation
Indices: 26099383--26099412 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
26099373 TGATGTTTTA
26099383 TTATTATTATTATT
1 TTATTATTATTATT
26099397 TTATTATTATTATT
1 TTATTATTATTATT
26099411 TT
1 TT
26099413 GTAACAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TTATTATTATTATT
Found at i:26100990 original size:17 final size:17
Alignment explanation
Indices: 26100968--26101001 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26100958 ATCCACTAAT
*
26100968 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
26100985 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
26101002 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:26105628 original size:17 final size:17
Alignment explanation
Indices: 26105606--26105639 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
26105596 ATCCACTAAT
*
26105606 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
26105623 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
26105640 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:26127531 original size:21 final size:20
Alignment explanation
Indices: 26127507--26127563 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 20
26127497 TCTCTCTCGC
26127507 TTTCTTTTTTGCCTTTTTCA-T
1 TTTCTTTTTT--CTTTTTCACT
26127528 TTTCATTTTCTTCTTTTTCACT
1 TTTC-TTTT-TTCTTTTTCACT
*
26127550 TTTATTTTTCTCTT
1 TTTCTTTTT-TCTT
26127564 CTCTTTTTTA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
20 1 0.03
21 20 0.65
22 8 0.26
23 2 0.06
ACGTcount: A:0.07, C:0.19, G:0.02, T:0.72
Consensus pattern (20 bp):
TTTCTTTTTTCTTTTTCACT
Found at i:26127591 original size:19 final size:20
Alignment explanation
Indices: 26127549--26127592 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
26127539 TCTTTTTCAC
*
26127549 TTTTATTTTTCTCTTCTCTT
1 TTTTATTTTTCTCTTCACTT
26127569 TTTTATTTTTC-C-TCACTT
1 TTTTATTTTTCTCTTCACTT
26127587 GTTTTA
1 -TTTTA
26127593 ACAACAGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 5 0.23
19 6 0.27
20 11 0.50
ACGTcount: A:0.09, C:0.18, G:0.02, T:0.70
Consensus pattern (20 bp):
TTTTATTTTTCTCTTCACTT
Found at i:26131688 original size:4 final size:4
Alignment explanation
Indices: 26131679--26131707 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
26131669 AAACTAAGTA
26131679 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
26131708 TAAAACTTTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:26145493 original size:22 final size:22
Alignment explanation
Indices: 26145467--26145511 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
26145457 CTATGCTTAA
26145467 TAACTTAATCAATTGAATCACT
1 TAACTTAATCAATTGAATCACT
26145489 TAACTTAATCAATTGAATCACT
1 TAACTTAATCAATTGAATCACT
26145511 T
1 T
26145512 CGTATATAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.18, G:0.04, T:0.38
Consensus pattern (22 bp):
TAACTTAATCAATTGAATCACT
Found at i:26146984 original size:22 final size:21
Alignment explanation
Indices: 26146953--26146995 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
26146943 GCGATCATTT
26146953 GAAAAAGTAAAATTCAAGATA
1 GAAAAAGTAAAATTCAAGATA
* *
26146974 GAAAAACGTAAACTTTAAGATA
1 GAAAAA-GTAAAATTCAAGATA
26146996 ATATGTGATG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.58, C:0.07, G:0.14, T:0.21
Consensus pattern (21 bp):
GAAAAAGTAAAATTCAAGATA
Found at i:26153783 original size:11 final size:10
Alignment explanation
Indices: 26153761--26153803 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 10
26153751 AAAAGCCAAA
26153761 AAGAAAAAAG
1 AAGAAAAAAG
26153771 AAGAAATAAAG
1 AAGAAA-AAAG
26153782 AAGAAAGAAAAG
1 AAG-AA-AAAAG
26153794 AGAGAAAAAA
1 A-AGAAAAAA
26153804 ATGATGGAGA
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
10 6 0.21
11 11 0.38
12 9 0.31
13 3 0.10
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (10 bp):
AAGAAAAAAG
Found at i:26153846 original size:16 final size:16
Alignment explanation
Indices: 26153821--26153864 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
26153811 AGAACGTGAA
26153821 AAAG-AAAATAAAAAT
1 AAAGAAAAATAAAAAT
* *
26153836 AAATAAAAATAAACAT
1 AAAGAAAAATAAAAAT
*
26153852 TAAGAAAAATAAA
1 AAAGAAAAATAAA
26153865 TAATTATTTT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 3 0.12
16 21 0.88
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (16 bp):
AAAGAAAAATAAAAAT
Found at i:26154872 original size:38 final size:38
Alignment explanation
Indices: 26154820--26155050 Score: 284
Period size: 38 Copynumber: 6.1 Consensus size: 38
26154810 TGAATCATAA
* *
26154820 TGTTATTCACGCTTTGTGCCTAGCAGGCTTAGTGCCAG
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGCCGG
*
26154858 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTACCGG
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGCCGG
* *
26154896 TGTTATTCAAGTTTTGTGCCTAGCAGGCTTAGTGCCTG
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGCCGG
* * * *
26154934 TGTTATTCAGGCTTTGTGCCTAACAGGCTTAGT-CTTGA
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGC-CGG
* * * *
26154972 TGTTATTCAGGCTTTGTGCGTAGCAAGCTTAATGCCGG
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGCCGG
* * * * *
26155010 TGTTATTCAAGCTTAGTACCTAGTAGGCTTATTACCGG
1 TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGCCGG
26155048 TGT
1 TGT
26155051 AATAAATTTT
Statistics
Matches: 165, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
37 1 0.01
38 163 0.99
39 1 0.01
ACGTcount: A:0.18, C:0.19, G:0.26, T:0.37
Consensus pattern (38 bp):
TGTTATTCAAGCTTTGTGCCTAGCAGGCTTAGTGCCGG
Found at i:26156400 original size:22 final size:23
Alignment explanation
Indices: 26156375--26156417 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
26156365 AGAAGTGTTA
*
26156375 AAAAATTTTT-GAAAAACAAATG
1 AAAAATTTTTAAAAAAACAAATG
*
26156397 AAAAGTTTTTAAAAAAACAAA
1 AAAAATTTTTAAAAAAACAAA
26156418 AAAACAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 9 0.50
23 9 0.50
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.26
Consensus pattern (23 bp):
AAAAATTTTTAAAAAAACAAATG
Found at i:26158018 original size:37 final size:37
Alignment explanation
Indices: 26157968--26158046 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26157958 TTATTACGAA
* * *
26157968 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26158005 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26158042 GTCTT
1 GTCTT
26158047 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26158315 original size:47 final size:47
Alignment explanation
Indices: 26158165--26158543 Score: 571
Period size: 47 Copynumber: 8.1 Consensus size: 47
26158155 CCCTTCGGGA
* * * * * * *
26158165 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26158212 CCTGTCACATATATACAATTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26158258 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26158305 CTTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26158352 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26158399 CTTATCACCTATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26158446 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
26158493 CTTATCACACATATACACTTTCACATTCATCACATCGACCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26158540 CTTA
1 CTTA
26158544 CTATCATTTC
Statistics
Matches: 309, Mismatches: 22, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
46 39 0.13
47 270 0.87
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26162052 original size:40 final size:40
Alignment explanation
Indices: 26161951--26162052 Score: 118
Period size: 40 Copynumber: 2.5 Consensus size: 40
26161941 CAGCATGATT
* * *
26161951 GCTCTTCGGGATTTAGCACGGATATATCACTAGCACGAAT
1 GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAA
* * *
26161991 GCTCTTCGGAACTTAGTCCGGATATGGTCACTTAGCAC-AAA
1 GCTCTTCGGGACTTAGCCCGGATAT-ATCAC-TAGCACGAAA
26162032 GC-CTTCGGGACTTAGCCCGGA
1 GCTCTTCGGGACTTAGCCCGGA
26162053 CATCATTCGA
Statistics
Matches: 52, Mismatches: 8, Indels: 4
0.81 0.12 0.06
Matches are distributed among these distances:
40 38 0.73
41 8 0.15
42 6 0.12
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (40 bp):
GCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAAA
Found at i:26162396 original size:29 final size:29
Alignment explanation
Indices: 26162357--26162435 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
26162347 CTTAATAATC
*
26162357 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
26162387 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
26162416 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26162436 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:26162478 original size:43 final size:43
Alignment explanation
Indices: 26162417--26162519 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
26162407 TGCATTTCAA
26162417 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
26162460 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
26162503 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
26162520 TGAAAACCAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.26, C:0.36, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:26164433 original size:36 final size:37
Alignment explanation
Indices: 26164361--26164438 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
26164351 TTATTACGAA
* *
26164361 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
*
26164398 GTCTTACCCGGACAAAATC-CCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
26164434 GTCTT
1 GTCTT
26164439 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.26, C:0.31, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCTCCACACGAAGTCATCGG
Found at i:26164706 original size:47 final size:47
Alignment explanation
Indices: 26164556--26164734 Score: 261
Period size: 47 Copynumber: 3.8 Consensus size: 47
26164546 CCCTTCGGGA
* * * * * * *
26164556 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26164603 CCTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26164649 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26164696 CTTATTACATATATACACTTTCACATTCATCACATCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGC
26164735 TATATACACT
Statistics
Matches: 119, Mismatches: 12, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
46 40 0.34
47 79 0.66
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26164715 original size:93 final size:94
Alignment explanation
Indices: 26164556--26164734 Score: 261
Period size: 93 Copynumber: 1.9 Consensus size: 94
26164546 CCCTTCGGGA
* * * * * *
26164556 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
26164621 TTTCACATTCA-CACATCGGCCATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
* * * *
26164649 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
26164714 TTTCACATTCATCACATCGGC
66 TTTCACATTCATCACATCGGC
26164735 TATATACACT
Statistics
Matches: 75, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
93 66 0.88
94 9 0.12
ACGTcount: A:0.27, C:0.31, G:0.09, T:0.32
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:26164741 original size:30 final size:30
Alignment explanation
Indices: 26164705--26164767 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
26164695 CCTTATTACA
26164705 TATATACACTTTCACATTCATCACATCGGC
1 TATATACACTTTCACATTCATCACATCGGC
26164735 TATATACACTTTCACATTCATCACATCGGC
1 TATATACACTTTCACATTCATCACATCGGC
26164765 TAT
1 TAT
26164768 TAGGCCTTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.30, C:0.29, G:0.06, T:0.35
Consensus pattern (30 bp):
TATATACACTTTCACATTCATCACATCGGC
Found at i:26164748 original size:77 final size:77
Alignment explanation
Indices: 26164658--26164814 Score: 296
Period size: 77 Copynumber: 2.0 Consensus size: 77
26164648 CCTTATCACA
*
26164658 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATTACATATATACACTTTCACATT
1 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
26164723 CATCACATCGGC
66 CATCACATCGGC
*
26164735 TATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATT
1 TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
26164800 CATCACATCGGC
66 CATCACATCGGC
26164812 TAT
1 TAT
26164815 TAGGCCTTAT
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
77 78 1.00
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (77 bp):
TATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
CATCACATCGGC
Found at i:26164803 original size:47 final size:47
Alignment explanation
Indices: 26164736--26164960 Score: 377
Period size: 47 Copynumber: 4.9 Consensus size: 47
26164726 CACATCGGCT
* *
26164736 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACAT
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
*
26164783 ATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT--CAC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
26164828 ATATACACTTTCACATTCATCACATCGG-C-TTAGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
26164873 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
* *
26164920 ATATACACTTTCACATTCATCACATCGACCATTTGGCCTTA
1 ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
26164961 CTATCATTTC
Statistics
Matches: 170, Mismatches: 4, Indels: 8
0.93 0.02 0.04
Matches are distributed among these distances:
43 11 0.06
45 61 0.36
46 1 0.01
47 97 0.57
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
ATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACAC
Found at i:26164928 original size:214 final size:216
Alignment explanation
Indices: 26164556--26164946 Score: 626
Period size: 214 Copynumber: 1.8 Consensus size: 216
26164546 CCCTTCGGGA
* * * * * *
26164556 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACAC
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACA-ATATACAC
*
26164621 TTTCACATTCACACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCG
65 TTTCACATTCACACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCG
* *
26164686 GCCATTAGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCTATATACACTTTCACA
130 GCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATATACACTTTCACA
26164751 TTCATCACATCGGCTATTAGGC
195 TTCATCACATCGGCTATTAGGC
* * * *
26164773 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCAC-ATATACACT
1 CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACAATATACACT
26164837 TTCACATTCATCACATCGG-C-TTAGGCCTTATCACACATATACACTTTCACATTCATCACATCG
66 TTCACATTCA-CACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCG
26164900 GCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCG
130 GCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCG
26164947 ACCATTTGGC
Statistics
Matches: 160, Mismatches: 13, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
214 87 0.54
215 20 0.12
216 8 0.05
217 45 0.28
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (216 bp):
CTTATCACATATATACACTTTCACATCCATCACATCGGCCACTAGGCCCTATCACAATATACACT
TTCACATTCACACATCGGCCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGG
CCATTAGGCCTTATCACACATATACACTTTCACATTCATCACATCGGCTATATACACTTTCACAT
TCATCACATCGGCTATTAGGC
Found at i:26177005 original size:40 final size:41
Alignment explanation
Indices: 26176961--26177040 Score: 117
Period size: 40 Copynumber: 2.0 Consensus size: 41
26176951 AGTTACCATA
*
26176961 TCCGGACTAAGATCGAAGGCATTT-GTGTGAGTATACTAAT
1 TCCGGACTAAGACCGAAGGCATTTGGTGTGAGTATACTAAT
* * *
26177001 TCCGGGCTAAGCCCGAAGGCATTTGGTGTGAGTTTACTAA
1 TCCGGACTAAGACCGAAGGCATTTGGTGTGAGTATACTAA
26177041 ATCGGGTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 1
0.88 0.10 0.03
Matches are distributed among these distances:
40 21 0.60
41 14 0.40
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.29
Consensus pattern (41 bp):
TCCGGACTAAGACCGAAGGCATTTGGTGTGAGTATACTAAT
Found at i:26182162 original size:15 final size:15
Alignment explanation
Indices: 26182142--26182171 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
26182132 GCTACTTGGA
26182142 AACCGAGAGCTCGAT
1 AACCGAGAGCTCGAT
26182157 AACCGAGAGCTCGAT
1 AACCGAGAGCTCGAT
26182172 GAAAGAACGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.27, G:0.27, T:0.13
Consensus pattern (15 bp):
AACCGAGAGCTCGAT
Found at i:26183981 original size:39 final size:40
Alignment explanation
Indices: 26183899--26184030 Score: 146
Period size: 39 Copynumber: 3.3 Consensus size: 40
26183889 GGACTAAGAT
* * * *
26183899 CCGAAGGCACTTTGTGTGAGATACTAAT-TCCGGGCTAAG-C
1 CCGAAGGCA-TTTGTGCGAGTTACTAATATCCAGG-TTAGTC
*
26183939 CCGAAGGCATTGGTGCGAGTTACTAATATCC-GGTTAGTC
1 CCGAAGGCATTTGTGCGAGTTACTAATATCCAGGTTAGTC
* *
26183978 CCGAAGGCATTTGTGCGAGTTACT-ATAACCAGGCTATGTC
1 CCGAAGGCATTTGTGCGAGTTACTAATATCCAGGTTA-GTC
26184018 CCGAAGGCATTTG
1 CCGAAGGCATTTG
26184031 AACGAGTAGC
Statistics
Matches: 81, Mismatches: 7, Indels: 8
0.84 0.07 0.08
Matches are distributed among these distances:
38 8 0.10
39 45 0.56
40 28 0.35
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTAATATCCAGGTTAGTC
Found at i:26184051 original size:78 final size:79
Alignment explanation
Indices: 26183899--26184052 Score: 181
Period size: 78 Copynumber: 2.0 Consensus size: 79
26183889 GGACTAAGAT
* * * **
26183899 CCGAAGGCACTTTGTGTGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTA
1 CCGAAGGCACTTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTA
26183964 ATATCCGGTTAGTC
66 ATATCCGGTTAGTC
* * *
26183978 CCGAAGGCA-TTTGTGCGAGTTACT-ATAACCAGGCTATGTCCCGAAGGCATTTGAACGAG-TAG
1 CCGAAGGCACTTTGTGCGAGATACTAAT-ACCAGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-
26184040 CT-ATATCCGGTTA
63 CTAATATCCGGTTA
26184053 AATCCGAAGG
Statistics
Matches: 64, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
77 2 0.03
78 34 0.53
79 28 0.44
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (79 bp):
CCGAAGGCACTTTGTGCGAGATACTAATACCAGGCTAAGCCCGAAGGCATTGGAACGAGTTACTA
ATATCCGGTTAGTC
Found at i:26191133 original size:79 final size:82
Alignment explanation
Indices: 26191022--26191206 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
26191012 GCTACTCGTT
* * *
26191022 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
26191085 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
26191102 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
26191165 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
26191182 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26191207 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:26191206 original size:40 final size:40
Alignment explanation
Indices: 26191003--26191206 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
26190993 CGGAATTTAA
** *
26191003 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
26191043 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
26191083 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26191122 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
26191162 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
26191202 CCGGA
1 CCGGA
26191207 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26204930 original size:27 final size:28
Alignment explanation
Indices: 26204892--26204944 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
26204882 TGAGGAAAAA
* * *
26204892 GAAAAAGGAGAAGA-GAAAATTAAAAGT
1 GAAAAAGAAGAAAATGAAAATGAAAAGT
26204919 GAAAAAGAAGAAAATGAAAATGAAAA
1 GAAAAAGAAGAAAATGAAAATGAAAA
26204945 AGGCGAAAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 12 0.55
28 10 0.45
ACGTcount: A:0.68, C:0.00, G:0.23, T:0.09
Consensus pattern (28 bp):
GAAAAAGAAGAAAATGAAAATGAAAAGT
Found at i:26204953 original size:21 final size:22
Alignment explanation
Indices: 26204905--26204946 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
26204895 AAAGGAGAAG
*
26204905 AGAAAATTAAAAGTGAAAAAGA
1 AGAAAATGAAAAGTGAAAAAGA
26204927 AGAAAATGAAAA-TGAAAAAG
1 AGAAAATGAAAAGTGAAAAAG
26204947 GCGAAAAGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 8 0.42
22 11 0.58
ACGTcount: A:0.69, C:0.00, G:0.19, T:0.12
Consensus pattern (22 bp):
AGAAAATGAAAAGTGAAAAAGA
Found at i:26204958 original size:21 final size:22
Alignment explanation
Indices: 26204913--26204958 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
26204903 AGAGAAAATT
*
26204913 AAAAGTGAAAAAGAAGAAAATG
1 AAAAGTGAAAAAGAAGAAAAGG
**
26204935 AAAA-TGAAAAAGGCGAAAAGG
1 AAAAGTGAAAAAGAAGAAAAGG
26204956 AAA
1 AAA
26204959 GCGAGAGAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.67, C:0.02, G:0.24, T:0.07
Consensus pattern (22 bp):
AAAAGTGAAAAAGAAGAAAAGG
Found at i:26209355 original size:28 final size:27
Alignment explanation
Indices: 26209319--26209372 Score: 72
Period size: 28 Copynumber: 2.0 Consensus size: 27
26209309 CTTCTTAGGA
* *
26209319 CTTTATCTTTACTATTTTCTTGTTGTT
1 CTTTATCTTTACTAATTTCTGGTTGTT
*
26209346 CTTTCATCTTTATTAATTTCTGGTTGT
1 CTTT-ATCTTTACTAATTTCTGGTTGT
26209373 GCTGATTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 4 0.17
28 19 0.83
ACGTcount: A:0.13, C:0.15, G:0.09, T:0.63
Consensus pattern (27 bp):
CTTTATCTTTACTAATTTCTGGTTGTT
Found at i:26211519 original size:20 final size:20
Alignment explanation
Indices: 26211494--26211541 Score: 78
Period size: 20 Copynumber: 2.4 Consensus size: 20
26211484 AACTAAAGGA
*
26211494 AGCTAAAAATGAGCTCATTG
1 AGCTAAAAACGAGCTCATTG
*
26211514 AGCTAAGAACGAGCTCATTG
1 AGCTAAAAACGAGCTCATTG
26211534 AGCTAAAA
1 AGCTAAAA
26211542 TTAGCTGAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.42, C:0.17, G:0.21, T:0.21
Consensus pattern (20 bp):
AGCTAAAAACGAGCTCATTG
Found at i:26215995 original size:20 final size:20
Alignment explanation
Indices: 26215970--26216017 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
26215960 AACTAAAGTA
*
26215970 AGCTAAAAATAAGCTCATTG
1 AGCTAAAAACAAGCTCATTG
* *
26215990 AGCTAAGAACGAGCTCATTG
1 AGCTAAAAACAAGCTCATTG
26216010 AGCTAAAA
1 AGCTAAAA
26216018 TTGAGCTGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.44, C:0.17, G:0.19, T:0.21
Consensus pattern (20 bp):
AGCTAAAAACAAGCTCATTG
Found at i:26216023 original size:20 final size:19
Alignment explanation
Indices: 26215970--26216024 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 19
26215960 AACTAAAGTA
*
26215970 AGCTAAAAATAAGCTCATTG
1 AGCT-AAAATGAGCTCATTG
*
26215990 AGCTAAGAACGAGCTCATTG
1 AGCTAA-AATGAGCTCATTG
26216010 AGCTAAAATTGAGCT
1 AGCTAAAA-TGAGCT
26216025 GAATTGAACT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 4 0.13
20 26 0.87
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24
Consensus pattern (19 bp):
AGCTAAAATGAGCTCATTG
Found at i:26229369 original size:20 final size:20
Alignment explanation
Indices: 26229341--26229385 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
26229331 GCTGATAAAA
* *
26229341 AGCTAAATTGAGCTTAAATG
1 AGCTGAATTGAGCTCAAATG
26229361 AGCTGAATTGAGCTCAAATG
1 AGCTGAATTGAGCTCAAATG
26229381 AGCTG
1 AGCTG
26229386 GTTGGAGCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.36, C:0.13, G:0.24, T:0.27
Consensus pattern (20 bp):
AGCTGAATTGAGCTCAAATG
Found at i:26229393 original size:20 final size:20
Alignment explanation
Indices: 26229341--26229404 Score: 67
Period size: 20 Copynumber: 3.2 Consensus size: 20
26229331 GCTGATAAAA
* *
26229341 AGCTAAATTGAGCTTAAATG
1 AGCTGAATTGAGCTAAAATG
*
26229361 AGCTGAATTGAGCTCAAATG
1 AGCTGAATTGAGCTAAAATG
* *
26229381 AGCTG-GTTGGAGCTAAAACG
1 AGCTGAATT-GAGCTAAAATG
26229401 AGCT
1 AGCT
26229405 AGGGAAGCTG
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
19 2 0.05
20 36 0.95
ACGTcount: A:0.34, C:0.14, G:0.27, T:0.25
Consensus pattern (20 bp):
AGCTGAATTGAGCTAAAATG
Found at i:26235931 original size:18 final size:20
Alignment explanation
Indices: 26235910--26235959 Score: 68
Period size: 18 Copynumber: 2.5 Consensus size: 20
26235900 AAAAGAAGAC
26235910 AGAAAAAGA-AATCAAAAA-
1 AGAAAAAGAGAATCAAAAAG
*
26235928 AGAAAAAGAGAATGAAAAAG
1 AGAAAAAGAGAATCAAAAAG
26235948 AGAAAAAAGAGA
1 AG-AAAAAGAGA
26235960 TTGAGAGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 9 0.32
19 8 0.29
20 2 0.07
21 9 0.32
ACGTcount: A:0.74, C:0.02, G:0.20, T:0.04
Consensus pattern (20 bp):
AGAAAAAGAGAATCAAAAAG
Found at i:26238854 original size:25 final size:25
Alignment explanation
Indices: 26238826--26238873 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
26238816 GAAATAAAAG
*
26238826 GGGGTTGCTTGTGCTGATTCCCCCA
1 GGGGTTGCTAGTGCTGATTCCCCCA
26238851 GGGGTTGCTAGTGCTGATTCCCC
1 GGGGTTGCTAGTGCTGATTCCCC
26238874 GATTAAGTGG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.08, C:0.27, G:0.33, T:0.31
Consensus pattern (25 bp):
GGGGTTGCTAGTGCTGATTCCCCCA
Found at i:26238894 original size:99 final size:102
Alignment explanation
Indices: 26238648--26238906 Score: 386
Period size: 99 Copynumber: 2.6 Consensus size: 102
26238638 TTGTACATAA
** * *
26238648 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTC
26238713 TGAAATGTGAAAAGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAA-GTGAAAAGGGTTGCTATGTGCTGATTCCCCCG
26238751 AGGGGTTGCTAAGTGCTGATTCCCC-ATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTC
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTC
26238815 TGAAA-T-AAAAGGGGGTTGCT-TGTGCTGATTCCCCC-
66 TGAAAGTGAAAA--GGGTTGCTATGTGCTGATTCCCCCG
* * *
26238850 AGGGGTTGCT-AGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
26238907 CAATAACGGT
Statistics
Matches: 146, Mismatches: 7, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
98 14 0.10
99 43 0.29
100 16 0.11
101 8 0.05
102 42 0.29
103 23 0.16
ACGTcount: A:0.19, C:0.21, G:0.29, T:0.31
Consensus pattern (102 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCTC
TGAAAGTGAAAAGGGTTGCTATGTGCTGATTCCCCCG
Found at i:26246116 original size:26 final size:26
Alignment explanation
Indices: 26246081--26246130 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
26246071 AAATAAAAAG
*
26246081 GGGGTTGCTATGTGCTGATTCCCCAA
1 GGGGTTGCTAAGTGCTGATTCCCCAA
26246107 GGGGTTGCTAAGTGCTGATTCCCC
1 GGGGTTGCTAAGTGCTGATTCCCC
26246131 GATTAAGTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.14, C:0.24, G:0.32, T:0.30
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCAA
Found at i:26246150 original size:102 final size:104
Alignment explanation
Indices: 26245899--26246163 Score: 410
Period size: 104 Copynumber: 2.6 Consensus size: 104
26245889 GTTGTACATA
** *
26245899 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
26245964 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
26246003 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
26246067 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATT-CCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
26246105 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
26246164 AATAACGGTT
Statistics
Matches: 148, Mismatches: 11, Indels: 6
0.90 0.07 0.04
Matches are distributed among these distances:
102 57 0.39
103 26 0.18
104 65 0.44
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:26261360 original size:16 final size:15
Alignment explanation
Indices: 26261334--26261363 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
26261324 GCCATCAATT
26261334 ACCTTTTTCTATCCC
1 ACCTTTTTCTATCCC
26261349 ACCTTGTTTCTATCC
1 ACCTT-TTTCTATCC
26261364 TTAACCAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.13, C:0.37, G:0.03, T:0.47
Consensus pattern (15 bp):
ACCTTTTTCTATCCC
Found at i:26261745 original size:20 final size:20
Alignment explanation
Indices: 26261722--26261760 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26261712 AATTAAAACT
*
26261722 AGACACGATTAATTAAGTTA
1 AGACACAATTAATTAAGTTA
*
26261742 AGACACAATTAATTCAGTT
1 AGACACAATTAATTAAGTT
26261761 GGACAATACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.31
Consensus pattern (20 bp):
AGACACAATTAATTAAGTTA
Found at i:26262015 original size:30 final size:30
Alignment explanation
Indices: 26261979--26262038 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
26261969 TTTAAATGGA
* *
26261979 ATTGAGCTGAATTTGAGCTTA-TTCGAGCTC
1 ATTGAGCTGAAATGGAGCTTAGTTC-AGCTC
26262009 ATTGAGCTGAAATGGAGCTTAGTTCAGCTC
1 ATTGAGCTGAAATGGAGCTTAGTTCAGCTC
26262039 GCAAAAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 24 0.89
31 3 0.11
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (30 bp):
ATTGAGCTGAAATGGAGCTTAGTTCAGCTC
Found at i:26265744 original size:27 final size:27
Alignment explanation
Indices: 26265714--26265889 Score: 192
Period size: 27 Copynumber: 6.5 Consensus size: 27
26265704 AAATTGTACA
*
26265714 GCACTAAGTGTGCGATTTGACTATGTT
1 GCACTAAGTGTGCGAATTGACTATGTT
* * *
26265741 GCACTAAGTGTGCGAAATGAATATGAT
1 GCACTAAGTGTGCGAATTGACTATGTT
* **
26265768 GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAATTGACTATGTT
* *
26265795 GCACTAAGTGTGCGAGTTGACTATGTA
1 GCACTAAGTGTGCGAATTGACTATGTT
* *
26265822 GCACTAAGTGTGCGAGTTTGATTATG-T
1 GCACTAAGTGTGCGA-ATTGACTATGTT
* * * *
26265849 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAATTGACTATGTT
*
26265876 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
26265890 GACTTAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
26 8 0.06
27 111 0.87
28 8 0.06
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAATTGACTATGTT
Found at i:26265774 original size:54 final size:54
Alignment explanation
Indices: 26265713--26265889 Score: 225
Period size: 54 Copynumber: 3.3 Consensus size: 54
26265703 TAAATTGTAC
**
26265713 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT
1 AGCACTAAGTGTGCGATTTGACTATG-TGCACTAAGTGTGCGAGTTGAATATGAT
* * * *
26265768 -GCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATG-T
1 AGCACTAAGTGTGCGATTTGACTATG-TGCACTAAGTGTGCGAGTTGAATATGAT
* *
26265821 AGCACTAAGTGTGCGAGTTTGATTATGTGCACTAAGTGTGCGAGTTGATTAT-AT
1 AGCACTAAGTGTGCGA-TTTGACTATGTGCACTAAGTGTGCGAGTTGAATATGAT
*
26265875 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26265890 GACTTAATAT
Statistics
Matches: 106, Mismatches: 13, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
53 1 0.01
54 98 0.92
55 7 0.07
ACGTcount: A:0.27, C:0.15, G:0.29, T:0.30
Consensus pattern (54 bp):
AGCACTAAGTGTGCGATTTGACTATGTGCACTAAGTGTGCGAGTTGAATATGAT
Found at i:26265852 original size:81 final size:81
Alignment explanation
Indices: 26265714--26265868 Score: 240
Period size: 81 Copynumber: 1.9 Consensus size: 81
26265704 AAATTGTACA
* *
26265714 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
26265779 GCGAATTGACCATGCG
66 GCGAATTGACCATGCG
** *
26265795 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATG-TGCACTAAGTG
1 GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-AATGAATATGATGCACTAAGTG
*
26265859 TGCGAGTTGA
65 TGCGAATTGA
26265869 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
81 60 0.90
82 7 0.10
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26265880 original size:81 final size:81
Alignment explanation
Indices: 26265710--26265889 Score: 236
Period size: 81 Copynumber: 2.2 Consensus size: 81
26265700 GATTAAATTG
* *
26265710 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
26265775 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26265791 TGCGGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATG-TGCACTA
1 TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGA-AATGAATATGATGCACTA
* **
26265855 AGTGTGCGAGTTGATTA
65 AGTGTGCGAATTGACCA
* *
26265872 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26265890 GACTTAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
81 77 0.92
82 7 0.08
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26268775 original size:18 final size:16
Alignment explanation
Indices: 26268749--26268788 Score: 53
Period size: 18 Copynumber: 2.4 Consensus size: 16
26268739 ATTTTCTCTC
*
26268749 TTTTATTTTTCAACATCT
1 TTTTCTTTTTCAA-AT-T
26268767 TTTTCTTTTTCAAATT
1 TTTTCTTTTTCAAATT
26268783 TTTTCT
1 TTTTCT
26268789 CAATCTCAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.33
17 2 0.10
18 12 0.57
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.68
Consensus pattern (16 bp):
TTTTCTTTTTCAAATT
Found at i:26268854 original size:12 final size:12
Alignment explanation
Indices: 26268848--26268931 Score: 62
Period size: 12 Copynumber: 6.8 Consensus size: 12
26268838 ACTTTTTCAA
*
26268848 TTTCTTTTTCTT
1 TTTCATTTTCTT
* *
26268860 TTGCAATTTCTT
1 TTTCATTTTCTT
*
26268872 TTT-ATTTTTCAT
1 TTTCA-TTTTCTT
26268884 TTTCATTTTCTT
1 TTTCATTTTCTT
* *
26268896 CTTCACTTTCTT
1 TTTCATTTTCTT
*
26268908 TTTCTTTTTATTCTT
1 TTTC--ATT-TTCTT
26268923 TTTCATTTT
1 TTTCATTTT
26268932 TATTACAATG
Statistics
Matches: 54, Mismatches: 13, Indels: 10
0.70 0.17 0.13
Matches are distributed among these distances:
11 1 0.02
12 40 0.74
13 3 0.06
14 1 0.02
15 9 0.17
ACGTcount: A:0.10, C:0.17, G:0.01, T:0.73
Consensus pattern (12 bp):
TTTCATTTTCTT
Found at i:26268857 original size:6 final size:6
Alignment explanation
Indices: 26268848--26268916 Score: 57
Period size: 6 Copynumber: 11.5 Consensus size: 6
26268838 ACTTTTTCAA
* ** * * *
26268848 TTTCTT TTTCTT TTGCAA TTTCTT TTTATT TTTCAT TTTCAT TTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
* **
26268896 CTTCAC TTTCTT TTTCTT TTT
1 TTTCTT TTTCTT TTTCTT TTT
26268917 ATTCTTTTTC
Statistics
Matches: 47, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
6 47 1.00
ACGTcount: A:0.09, C:0.17, G:0.01, T:0.72
Consensus pattern (6 bp):
TTTCTT
Found at i:26268860 original size:18 final size:18
Alignment explanation
Indices: 26268839--26268932 Score: 104
Period size: 18 Copynumber: 5.3 Consensus size: 18
26268829 TTTTCTCTCA
26268839 CTTTTTCAATTTCTTTTT
1 CTTTTTCAATTTCTTTTT
*
26268857 CTTTTGCAATTTCTTTTT
1 CTTTTTCAATTTCTTTTT
* * *
26268875 ATTTTTCATTTTCATTTT
1 CTTTTTCAATTTCTTTTT
* *
26268893 CTTCTTCACTTTCTTTTT
1 CTTTTTCAATTTCTTTTT
26268911 CTTTTT--A-TTCTTTTT
1 CTTTTTCAATTTCTTTTT
26268926 CATTTTT
1 C-TTTTT
26268933 ATTACAATGT
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
15 9 0.14
16 5 0.08
18 50 0.78
ACGTcount: A:0.11, C:0.17, G:0.01, T:0.71
Consensus pattern (18 bp):
CTTTTTCAATTTCTTTTT
Found at i:26268921 original size:15 final size:16
Alignment explanation
Indices: 26268903--26268935 Score: 59
Period size: 15 Copynumber: 2.1 Consensus size: 16
26268893 CTTCTTCACT
26268903 TTCTTTTTC-TTTTTA
1 TTCTTTTTCATTTTTA
26268918 TTCTTTTTCATTTTTA
1 TTCTTTTTCATTTTTA
26268934 TT
1 TT
26268936 ACAATGTGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (16 bp):
TTCTTTTTCATTTTTA
Done.