Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 85 of 170
Found at i:26270602 original size:11 final size:11
Alignment explanation
Indices: 26270572--26270605 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
26270562 GAAGAGCCAT
26270572 ATGGTGTGAAC
1 ATGGTGTGAAC
*
26270583 ATGG-CTGAAC
1 ATGGTGTGAAC
26270593 ATGGTGTGAAC
1 ATGGTGTGAAC
26270604 AT
1 AT
26270606 CTTTATGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.29, C:0.12, G:0.32, T:0.26
Consensus pattern (11 bp):
ATGGTGTGAAC
Found at i:26274787 original size:18 final size:16
Alignment explanation
Indices: 26274766--26274822 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 16
26274756 GAAATTACGA
26274766 AAAAAAAGAGTACGAAGT
1 AAAAAAA-A-TACGAAGT
*
26274784 AAAAAAAATTCGAAGTAT
1 AAAAAAAATACGAAG--T
*
26274802 AAAAAAAATAAGAAGT
1 AAAAAAAATACGAAGT
*
26274818 GAAAA
1 AAAAA
26274823 TCTTGTGAGT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
16 11 0.33
17 1 0.03
18 21 0.64
ACGTcount: A:0.67, C:0.04, G:0.16, T:0.14
Consensus pattern (16 bp):
AAAAAAAATACGAAGT
Found at i:26277569 original size:15 final size:16
Alignment explanation
Indices: 26277551--26277580 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
26277541 TTTCGCCTTT
26277551 TTCATTTTCA-TTTTC
1 TTCATTTTCACTTTTC
26277566 TTCATTTTCACTTTT
1 TTCATTTTCACTTTT
26277581 ATTTTTCTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.13, C:0.20, G:0.00, T:0.67
Consensus pattern (16 bp):
TTCATTTTCACTTTTC
Found at i:26295180 original size:11 final size:11
Alignment explanation
Indices: 26295150--26295183 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
26295140 GAAGAGCCAT
26295150 ATGGTGTGAAC
1 ATGGTGTGAAC
*
26295161 ATGG-CTGAAC
1 ATGGTGTGAAC
26295171 ATGGTGTGAAC
1 ATGGTGTGAAC
26295182 AT
1 AT
26295184 CTTTATGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.29, C:0.12, G:0.32, T:0.26
Consensus pattern (11 bp):
ATGGTGTGAAC
Found at i:26300925 original size:14 final size:12
Alignment explanation
Indices: 26300906--26300955 Score: 55
Period size: 13 Copynumber: 3.9 Consensus size: 12
26300896 CTTTCTCTTC
26300906 TTTTTTTCGAAT
1 TTTTTTTCGAAT
26300918 ATTTTTTTCGAAT
1 -TTTTTTTCGAAT
**
26300931 TTGTTTTTTTAAT
1 TT-TTTTTCGAAT
26300944 TTTTTTCTCGAA
1 TTTTTT-TCGAA
26300956 ACTACAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
12 6 0.19
13 25 0.81
ACGTcount: A:0.18, C:0.08, G:0.08, T:0.66
Consensus pattern (12 bp):
TTTTTTTCGAAT
Found at i:26301764 original size:11 final size:11
Alignment explanation
Indices: 26301734--26301767 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
26301724 GAAGAGCCAT
26301734 ATGGTGTGAAC
1 ATGGTGTGAAC
*
26301745 ATGG-CTGAAC
1 ATGGTGTGAAC
26301755 ATGGTGTGAAC
1 ATGGTGTGAAC
26301766 AT
1 AT
26301768 CTTTATGCCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
10 9 0.45
11 11 0.55
ACGTcount: A:0.29, C:0.12, G:0.32, T:0.26
Consensus pattern (11 bp):
ATGGTGTGAAC
Found at i:26304908 original size:23 final size:23
Alignment explanation
Indices: 26304871--26304916 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
26304861 AGGTCGAGTA
26304871 TGTAATATCCCGAAAATTACTAC
1 TGTAATATCCCGAAAATTACTAC
*
26304894 TGTAATA-CCCTGAAATTTACTAC
1 TGTAATATCCC-GAAAATTACTAC
26304917 AATAAGAAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 3 0.14
23 18 0.86
ACGTcount: A:0.37, C:0.22, G:0.09, T:0.33
Consensus pattern (23 bp):
TGTAATATCCCGAAAATTACTAC
Found at i:26308099 original size:50 final size:50
Alignment explanation
Indices: 26308024--26308370 Score: 457
Period size: 50 Copynumber: 7.0 Consensus size: 50
26308014 CATGTAAAAT
* * *
26308024 CGAGATGAGAGGTTCCATGTAAGACCATGTCTAGGACATAGCGTTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
26308074 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
* *
26308124 CGAGATGAGA-GTCCCATGTAAGACCATGTCTAGGACATGGTGTTGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
* * * *
26308173 CAAGATGAGAGGTCCCATGTAAAACCATGTTTGGGACATGGCGTTGGCAT
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
** * * *
26308223 CGAGATGAGAGGTCCCCCGAAAGACCATGTCTGGGACATGGCATGGGCAC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
* * *
26308273 CGAGATGAGAGGTCCCATGTAAGACCATATCTGGGATATGGCATTGGCA-
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
* * * ** *
26308322 -GTACAGGAAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 CG-AGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
26308371 TGTTATTATT
Statistics
Matches: 261, Mismatches: 34, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
48 1 0.00
49 85 0.33
50 175 0.67
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (50 bp):
CGAGATGAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCAC
Found at i:26308209 original size:99 final size:99
Alignment explanation
Indices: 26308024--26308370 Score: 455
Period size: 99 Copynumber: 3.5 Consensus size: 99
26308014 CATGTAAAAT
* *
26308024 CGAGATGAGAGGTTCCATGTAAGACCATGTCTAGGACATAGCGTTGGCACCGAGATGAGAGGTCC
1 CGAGATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAGAGGTCC
26308089 CATGTAAGACCATGTCTGGGACATGGCGTTGGCA
66 CATGTAAGACCATGTCTGGGACATGGCGTTGGCA
* *
26308123 CCGAGATGAGA-GTCCCATGTAAGACCATGTCTAGGACATGGTGTTGGCACCAAGATGAGAGGTC
1 -CGAGATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAGAGGTC
* *
26308187 CCATGTAAAACCATGTTTGGGACATGGCGTTGGCA
65 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
** * * * *
26308222 TCGAGATGAGAGGTCCCCCGAAAGACCATGTCTGGGACATGGCATGGGCACCGAGATGAGAGGTC
1 -CGAGATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAGAGGTC
* * *
26308287 CCATGTAAGACCATATCTGGGATATGGCATTGGCA
65 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCA
* * * ** * *
26308322 -GTACAGGAAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 CG-AGATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCA
26308371 TGTTATTATT
Statistics
Matches: 215, Mismatches: 30, Indels: 5
0.86 0.12 0.02
Matches are distributed among these distances:
98 1 0.00
99 129 0.60
100 85 0.40
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (99 bp):
CGAGATGAGAGGTCCCATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAGAGGTCC
CATGTAAGACCATGTCTGGGACATGGCGTTGGCA
Found at i:26308338 original size:149 final size:148
Alignment explanation
Indices: 26308038--26308371 Score: 445
Period size: 149 Copynumber: 2.2 Consensus size: 148
26308028 ATGAGAGGTT
* * * * *
26308038 CCATGTAAGACCATGTCTAGGACATAGCGTTGGCACCGAGATGAGAGGTCCCATGTAAGACCATG
1 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATGAGAGGTCCCACGAAAGACCATG
* * * **
26308103 TCTGGGACATGGCGTTGGCACCGAGATGAGAGTCCCATGTAAGACCATGTCTAGGACATGGTGTT
66 TCTGGGACATGGCATGGGCACCGAGATGAGAGTCCCATGTAAGACCATATCTAGGACATGGCATT
* **
26308168 GGCACCAAGATGAGAGGTC
131 GGCACCAAGA-GAAACATC
* * *
26308187 CCATGTAAAACCATGTTTGGGACATGGCGTTGGCATCGAGATGAGAGGTCCCCCGAAAGACCATG
1 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATGAGAGGTCCCACGAAAGACCATG
* *
26308252 TCTGGGACATGGCATGGGCACCGAGATGAGAGGTCCCATGTAAGACCATATCTGGGATATGGCAT
66 TCTGGGACATGGCATGGGCACCGAGATGAGA-GTCCCATGTAAGACCATATCTAGGACATGGCAT
**
26308317 TGGCAGTACAG-GAAACATC
130 TGGCACCA-AGAGAAACATC
*
26308336 CCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 CCATGTAAGACCATGTCTGGGACATGGCGTTGGCAT
26308372 GTTATTATTA
Statistics
Matches: 160, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
149 124 0.77
150 34 0.21
151 2 0.01
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.21
Consensus pattern (148 bp):
CCATGTAAGACCATGTCTGGGACATGGCGTTGGCATCGAGATGAGAGGTCCCACGAAAGACCATG
TCTGGGACATGGCATGGGCACCGAGATGAGAGTCCCATGTAAGACCATATCTAGGACATGGCATT
GGCACCAAGAGAAACATC
Found at i:26309899 original size:23 final size:23
Alignment explanation
Indices: 26309861--26309906 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
26309851 GGGAGAGAAA
* *
26309861 TGTAATATCCCGAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
26309884 TGTAATACCCCAAAAATTACTAC
1 TGTAATACCCCAAAAATTACTAC
26309907 ACTAAGAAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.41, C:0.24, G:0.07, T:0.28
Consensus pattern (23 bp):
TGTAATACCCCAAAAATTACTAC
Found at i:26317430 original size:27 final size:27
Alignment explanation
Indices: 26317399--26317572 Score: 201
Period size: 27 Copynumber: 6.6 Consensus size: 27
26317389 TAAATTGTAC
*
26317399 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
26317426 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
26317452 AGCACTAAGTGTGCGAATTGACCATGC
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
26317479 GGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
26317506 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
26317533 GGCACTAAGTGTGCGAGTTGA-T-TAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
26317558 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26317573 GACTTAATAA
Statistics
Matches: 126, Mismatches: 20, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
25 15 0.12
26 23 0.18
27 88 0.70
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:26317537 original size:54 final size:53
Alignment explanation
Indices: 26317399--26317572 Score: 235
Period size: 53 Copynumber: 3.3 Consensus size: 53
26317389 TAAATTGTAC
* **
26317399 AGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTG-ATATGT
* * *
26317452 AGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGA-TATGT
* *
26317506 AGCACTAAGTGTGCGATTTGATTATGTGGCACTAAGTGTGCGAGTTGAT-TAT
1 AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGATATGT
*
26317558 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26317573 GACTTAATAA
Statistics
Matches: 107, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
52 17 0.16
53 46 0.43
54 44 0.41
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (53 bp):
AGCACTAAGTGTGCGATTTGACTATGTGGCACTAAGTGTGCGAGTTGATATGT
Found at i:26323611 original size:40 final size:40
Alignment explanation
Indices: 26323563--26323789 Score: 409
Period size: 40 Copynumber: 5.7 Consensus size: 40
26323553 GCAAACACAT
* *
26323563 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
26323603 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
26323643 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
26323683 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
26323723 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
26323763 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
26323790 ATCCAATGTT
Statistics
Matches: 179, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:26332380 original size:40 final size:40
Alignment explanation
Indices: 26332332--26332558 Score: 409
Period size: 40 Copynumber: 5.7 Consensus size: 40
26332322 GCAAACACAT
* *
26332332 TTGCCTTCGGGTCTTAACCCGGACATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
* *
26332372 TTGCCTTCGGGTCTTAGCCCGGATATATCATCCCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
*
26332412 TTGCCTTCGGGTCATAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
26332452 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
26332492 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
1 TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
26332532 TTGCCTTCGGGTCTTAGCCCGGATATA
1 TTGCCTTCGGGTCTTAGCCCGGATATA
26332559 ATCCAATGTT
Statistics
Matches: 179, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.22, C:0.28, G:0.20, T:0.30
Consensus pattern (40 bp):
TTGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCATAA
Found at i:26336047 original size:12 final size:12
Alignment explanation
Indices: 26336026--26336060 Score: 61
Period size: 12 Copynumber: 2.9 Consensus size: 12
26336016 TTGATGTAAA
26336026 AAGAAGAAGAAC
1 AAGAAGAAGAAC
*
26336038 AAGAACAAGAAC
1 AAGAAGAAGAAC
26336050 AAGAAGAAGAA
1 AAGAAGAAGAA
26336061 GGAAAAAGTG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.69, C:0.09, G:0.23, T:0.00
Consensus pattern (12 bp):
AAGAAGAAGAAC
Found at i:26336061 original size:6 final size:6
Alignment explanation
Indices: 26336026--26336060 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
26336016 TTGATGTAAA
* *
26336026 AAGAAG AAGAAC AAGAAC AAGAAC AAGAAG AAGAA
1 AAGAAC AAGAAC AAGAAC AAGAAC AAGAAC AAGAA
26336061 GGAAAAAGTG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.69, C:0.09, G:0.23, T:0.00
Consensus pattern (6 bp):
AAGAAC
Found at i:26346327 original size:41 final size:41
Alignment explanation
Indices: 26346290--26346435 Score: 204
Period size: 41 Copynumber: 3.6 Consensus size: 41
26346280 GACTATACGT
*
26346290 CTAGCAGACTAAGTGCCGGTGAACTGAATCAGGCTATAGGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAGGC
26346331 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAGGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAGGC
* * ** *
26346372 CTAGCAGGCTAAGTGCCGGTGAACGGAATTAAACTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAGGC
* *
26346413 CTATCAGG-TGAAGTGCCAGTGAA
1 CTAGCAGGCT-AAGTGCCGGTGAA
26346436 TCTGTTTAAA
Statistics
Matches: 96, Mismatches: 8, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
40 1 0.01
41 95 0.99
ACGTcount: A:0.30, C:0.21, G:0.29, T:0.20
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGAACTGAATCAGGCTATAGGC
Found at i:26372305 original size:27 final size:27
Alignment explanation
Indices: 26372274--26372451 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26372264 TAAATTGTAC
26372274 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26372301 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26372327 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26372355 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26372383 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26372410 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26372437 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26372452 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26372388 original size:82 final size:81
Alignment explanation
Indices: 26372275--26372430 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26372265 AAATTGTACA
* *
26372275 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26372339 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26372356 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26372421 TGCGAGTTGA
65 TGCGAATTGA
26372431 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26372442 original size:82 final size:81
Alignment explanation
Indices: 26372271--26372451 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26372261 GATTAAATTG
* *
26372271 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26372336 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26372352 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26372416 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26372434 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26372452 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26380255 original size:50 final size:50
Alignment explanation
Indices: 26380182--26380369 Score: 155
Period size: 50 Copynumber: 3.6 Consensus size: 50
26380172 TCCTTTACTA
* * * * **
26380182 CCAATGCCATATCCCAAATATGGTCTTACATGAGAGTTCTCATATCGGTG
1 CCAATGCCATGTCTCAGACATGGTCTTACATGAGACCTCTCATATCGGTG
* ** * *
26380232 TCC-ATGCCATGTC-CTAGCCATGGTCTTACGGGGGACCTCTCATCTCGGTG
1 -CCAATGCCATGTCTC-AGACATGGTCTTACATGAGACCTCTCATATCGGTG
* *
26380282 CCAATGCCATGTCTCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGATG
1 CCAATGCCATGTCTCAGACATGGTCTTACATGAGACCTCTCAT-A--TC---GGTG
* *
26380338 CCAATGCCATGTCCCAGACATGGCCTTACATG
1 CCAATGCCATGTCTCAGACATGGTCTTACATG
26380370 GGATATCTTT
Statistics
Matches: 111, Mismatches: 17, Indels: 13
0.79 0.12 0.09
Matches are distributed among these distances:
49 3 0.03
50 70 0.63
51 3 0.03
53 2 0.02
56 33 0.30
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (50 bp):
CCAATGCCATGTCTCAGACATGGTCTTACATGAGACCTCTCATATCGGTG
Found at i:26389140 original size:50 final size:50
Alignment explanation
Indices: 26389044--26389172 Score: 161
Period size: 50 Copynumber: 2.6 Consensus size: 50
26389034 GGCAAAGAGA
* * * **
26389044 TCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGG
1 TCCCATGTAAGACCATGTCTGGGACATGGAATGGGCACCAAGATGAGAAC
* *
26389094 TCCTC-TGTAAGACCATGTCTGGGACATGGAATGGGCATCAATATGAGAAC
1 TCC-CATGTAAGACCATGTCTGGGACATGGAATGGGCACCAAGATGAGAAC
* *
26389144 TCCCATGTAAGACCATATCTGGGATATGG
1 TCCCATGTAAGACCATGTCTGGGACATGG
26389173 CATTGCCAGT
Statistics
Matches: 68, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
49 1 0.01
50 66 0.97
51 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (50 bp):
TCCCATGTAAGACCATGTCTGGGACATGGAATGGGCACCAAGATGAGAAC
Found at i:26391469 original size:56 final size:50
Alignment explanation
Indices: 26391397--26391594 Score: 170
Period size: 50 Copynumber: 3.9 Consensus size: 50
26391387 ACATTAAGGG
* **
26391397 GATGAGA--TCCCATGTAAGACCATGTCTGAGACATGGCATTTGCATTATTGA
1 GATGAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGC---ACCGA
*
26391448 GGTTATGAGAGGTCCCATGTAAGACCATGTCT-AGGACATGGCGTTGGCACCGA
1 -G--ATGAGAGGTCCCATGTAAGACCATGTCTGA-GACATGGCATTGGCACCGA
* *
26391501 GATGAGAGGTCCTC-TGTAAGACCATGTCTGGGACATGGCATGGGCACCGA
1 GATGAGAGGTCC-CATGTAAGACCATGTCTGAGACATGGCATTGGCACCGA
* ** * * * * *
26391551 TATGAGAACTCTCATGTAAGACCATATCTGGGATATGACATTGG
1 GATGAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGG
26391595 TAGTACAGGA
Statistics
Matches: 123, Mismatches: 15, Indels: 18
0.79 0.10 0.12
Matches are distributed among these distances:
49 1 0.01
50 77 0.63
51 1 0.01
52 2 0.02
53 3 0.02
54 6 0.05
55 1 0.01
56 32 0.26
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.25
Consensus pattern (50 bp):
GATGAGAGGTCCCATGTAAGACCATGTCTGAGACATGGCATTGGCACCGA
Found at i:26391581 original size:50 final size:50
Alignment explanation
Indices: 26391463--26391645 Score: 194
Period size: 50 Copynumber: 3.7 Consensus size: 50
26391453 TGAGAGGTCC
* * * **
26391463 CATGTAAGACCATGTCTAGGACATGGCGTTGGCACCGAGATGAGAGGTCCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATGAGAACT-CT
* *
26391514 C-TGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATGAGAACTCT
* * * * *
26391563 CATGTAAGACCATATCTGGGATATGACATTGGTA--GTACAGGA-AACATCT
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCACCG-ACATGAGAAC-TCT
*
26391612 CATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 CATGTAAGACCATGTCTGGGACATGGCATTGGCA
26391646 TGTTATTATC
Statistics
Matches: 111, Mismatches: 18, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
48 4 0.04
49 39 0.35
50 67 0.60
51 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (50 bp):
CATGTAAGACCATGTCTGGGACATGGCATTGGCACCGACATGAGAACTCT
Found at i:26404638 original size:16 final size:17
Alignment explanation
Indices: 26404617--26404650 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
26404607 AATATTAGGG
*
26404617 GTAAAAGTGT-AATTTT
1 GTAAAAGTATGAATTTT
26404633 GTAAAAGTATGAATTTT
1 GTAAAAGTATGAATTTT
26404650 G
1 G
26404651 GACTGAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (17 bp):
GTAAAAGTATGAATTTT
Found at i:26410156 original size:18 final size:19
Alignment explanation
Indices: 26410113--26410148 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
26410103 TATTTTGTAG
26410113 TTGAAAATACGTGTTTGTC
1 TTGAAAATACGTGTTTGTC
*
26410132 TTAAAAATA-GTGTTTGT
1 TTGAAAATACGTGTTTGT
26410149 TGTGAAAACT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.31, C:0.06, G:0.19, T:0.44
Consensus pattern (19 bp):
TTGAAAATACGTGTTTGTC
Found at i:26410749 original size:27 final size:28
Alignment explanation
Indices: 26410692--26410751 Score: 70
Period size: 27 Copynumber: 2.2 Consensus size: 28
26410682 AGGTGCCAGT
* *
26410692 ACAGT-ATATGTGGCAAAGCCACTAGTA
1 ACAGTAATATGTGGCAAAGCCACCAATA
* *
26410719 ACAGTAAT-TGTGGCAGAGCCACCAATG
1 ACAGTAATATGTGGCAAAGCCACCAATA
26410746 ACAGTA
1 ACAGTA
26410752 CCTCCTCCAT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 26 0.93
28 2 0.07
ACGTcount: A:0.37, C:0.20, G:0.23, T:0.20
Consensus pattern (28 bp):
ACAGTAATATGTGGCAAAGCCACCAATA
Found at i:26410950 original size:26 final size:26
Alignment explanation
Indices: 26410921--26411052 Score: 158
Period size: 26 Copynumber: 5.1 Consensus size: 26
26410911 ACGGTCGTTC
* *
26410921 TACCCTTCGGGGGTATTTCAGTAATT
1 TACCCATCGAGGGTATTTCAGTAATT
*
26410947 TACCTATCGAGGGTATTTC-GATAATT
1 TACCCATCGAGGGTATTTCAG-TAATT
* *
26410973 TACCCATCGAGGGTATTTCAATAATC
1 TACCCATCGAGGGTATTTCAGTAATT
* *
26410999 TAGCCATCGAGGGTATATCAGTAATT
1 TACCCATCGAGGGTATTTCAGTAATT
* * *
26411025 TATCCATCAAGGGTATTTCGGTAATT
1 TACCCATCGAGGGTATTTCAGTAATT
26411051 TA
1 TA
26411053 GGCCCATTAT
Statistics
Matches: 90, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
25 1 0.01
26 89 0.99
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (26 bp):
TACCCATCGAGGGTATTTCAGTAATT
Found at i:26426687 original size:20 final size:20
Alignment explanation
Indices: 26426664--26426729 Score: 51
Period size: 20 Copynumber: 3.2 Consensus size: 20
26426654 TGTGCAATTC
26426664 AGGGGTACCAAAGTACAAAT
1 AGGGGTACCAAAGTACAAAT
* *** * ** *
26426684 AGGGGCATGTATGTGGAATT
1 AGGGGTACCAAAGTACAAAT
26426704 TAGGGGTACCAAAGTACAAAT
1 -AGGGGTACCAAAGTACAAAT
26426725 AGGGG
1 AGGGG
26426730 CACGTATGTT
Statistics
Matches: 29, Mismatches: 16, Indels: 2
0.62 0.34 0.04
Matches are distributed among these distances:
20 17 0.59
21 12 0.41
ACGTcount: A:0.36, C:0.11, G:0.33, T:0.20
Consensus pattern (20 bp):
AGGGGTACCAAAGTACAAAT
Found at i:26426709 original size:41 final size:41
Alignment explanation
Indices: 26426644--26426787 Score: 200
Period size: 41 Copynumber: 3.5 Consensus size: 41
26426634 AAGCTTAAAC
*
26426644 AGGGG-ACGTGTGTGCAATTCAGGGGTACCAAAGTACAAAT
1 AGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAAT
* * *
26426684 AGGGGCATGTATGTGGAATTTAGGGGTACCAAAGTACAAAT
1 AGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAAT
* ** *
26426725 AGGGGCACGTATGTTCAATTCAGGGGTACTGAAGTACAAAC
1 AGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAAT
*
26426766 AGTGGCACGTATGTGCAATTCA
1 AGGGGCACGTATGTGCAATTCA
26426788 TCATTTTTCC
Statistics
Matches: 90, Mismatches: 13, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
40 5 0.06
41 85 0.94
ACGTcount: A:0.32, C:0.15, G:0.31, T:0.23
Consensus pattern (41 bp):
AGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTACAAAT
Found at i:26429737 original size:15 final size:16
Alignment explanation
Indices: 26429692--26429737 Score: 53
Period size: 15 Copynumber: 3.0 Consensus size: 16
26429682 ATCAATAATG
26429692 CAAGACATTAATTAAA
1 CAAGACATTAATTAAA
*
26429708 TAAG-CATTTAA-TAAA
1 CAAGACA-TTAATTAAA
26429723 CAAGACA-TAATTAAA
1 CAAGACATTAATTAAA
26429738 GACTCATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 7
0.74 0.06 0.21
Matches are distributed among these distances:
14 3 0.12
15 13 0.52
16 9 0.36
ACGTcount: A:0.57, C:0.11, G:0.07, T:0.26
Consensus pattern (16 bp):
CAAGACATTAATTAAA
Found at i:26430731 original size:23 final size:23
Alignment explanation
Indices: 26430704--26430748 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
26430694 AATAAATCGC
26430704 ACATACTAAATAAATAAGATTTT
1 ACATACTAAATAAATAAGATTTT
26430727 ACATACTAAATAAATAAGATTT
1 ACATACTAAATAAATAAGATTT
26430749 AGGCATAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.53, C:0.09, G:0.04, T:0.33
Consensus pattern (23 bp):
ACATACTAAATAAATAAGATTTT
Found at i:26437579 original size:85 final size:86
Alignment explanation
Indices: 26437434--26437605 Score: 256
Period size: 85 Copynumber: 2.0 Consensus size: 86
26437424 GGCCGGCCAT
*
26437434 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATCAT
* **
26437499 GTAAGG-ATTAATAAAATAAA
66 GGAAGGAAACAATAAAATAAA
* * * * *
26437519 GAGCATTGGTGGACAAGATGTTATGGCTAAAAACATGTCATAGACATGTTGTGTTGGTGCATCAT
1 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATCAT
26437584 GGAAGGAAACAATAAAATAAA
66 GGAAGGAAACAATAAAATAAA
26437605 G
1 G
26437606 TTAGTAATAA
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
85 64 0.83
86 13 0.17
ACGTcount: A:0.38, C:0.09, G:0.26, T:0.26
Consensus pattern (86 bp):
GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATCAT
GGAAGGAAACAATAAAATAAA
Found at i:26440337 original size:47 final size:47
Alignment explanation
Indices: 26440278--26440609 Score: 531
Period size: 47 Copynumber: 7.1 Consensus size: 47
26440268 GAAATGATAG
*
26440278 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26440325 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26440372 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26440419 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTAA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26440466 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26440513 TAAGGCCTAATAGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
26440559 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26440606 TAAG
1 TAAG
26440610 TCCCGAAGGG
Statistics
Matches: 268, Mismatches: 16, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
46 39 0.15
47 229 0.85
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:26440784 original size:37 final size:37
Alignment explanation
Indices: 26440728--26440806 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
26440718 CCGAGCTCTA
* * * *
26440728 AAGACCCGATGACTACGTGTGGGGATTTTGTTCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
26440765 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26440802 AAGAC
1 AAGAC
26440807 TTCGTAATAA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.18, G:0.32, T:0.27
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26442708 original size:43 final size:43
Alignment explanation
Indices: 26442660--26442848 Score: 360
Period size: 43 Copynumber: 4.4 Consensus size: 43
26442650 TTGGTTTTCA
* *
26442660 GCACTAAGTGTGCGGGCAAAAAGTGTTCACGGTTGGGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
26442703 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
26442746 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
26442789 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
26442832 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
26442849 TTGAAATGCA
Statistics
Matches: 144, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
43 144 1.00
ACGTcount: A:0.23, C:0.15, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:26442869 original size:29 final size:29
Alignment explanation
Indices: 26442834--26442903 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 29
26442824 TGAGATTGGC
* *
26442834 ACTAAGTGTGCGGGCTTGAAA-TGCATGGA
1 ACTAAGTGTGCGAG-TTGAAAGTACATGGA
* *
26442863 ACTAAGTGTGCGAGTTTAAAGTACATGGC
1 ACTAAGTGTGCGAGTTGAAAGTACATGGA
26442892 ACTAAGTGTGCG
1 ACTAAGTGTGCG
26442904 TGGTTGATTA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
28 5 0.14
29 31 0.86
ACGTcount: A:0.29, C:0.14, G:0.31, T:0.26
Consensus pattern (29 bp):
ACTAAGTGTGCGAGTTGAAAGTACATGGA
Found at i:26443394 original size:40 final size:40
Alignment explanation
Indices: 26443295--26443530 Score: 366
Period size: 40 Copynumber: 5.9 Consensus size: 40
26443285 GAGTTACTAA
26443295 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* *
26443335 A-CCAGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
*
26443374 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
26443414 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
26443454 ATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGTTAT
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
* * * *
26443494 ATCCGTGCTAAATCCCGAAGAGCAATCATGCTGGTGA
1 ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
26443531 CGTGTATTCG
Statistics
Matches: 180, Mismatches: 15, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
39 37 0.21
40 143 0.79
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
ATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGT
Found at i:26445226 original size:79 final size:82
Alignment explanation
Indices: 26445115--26445299 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
26445105 GCTACTCGTT
* * *
26445115 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
26445178 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
26445195 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
26445258 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
26445275 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26445300 CATCTTCAAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:26445299 original size:40 final size:40
Alignment explanation
Indices: 26445096--26445299 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
26445086 CGGAATTTAA
** *
26445096 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
26445136 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
26445176 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26445215 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
26445255 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
26445295 CCGGA
1 CCGGA
26445300 CATCTTCAAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26453125 original size:79 final size:82
Alignment explanation
Indices: 26453014--26453198 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 82
26453004 GCTACTCGTT
* *
26453014 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
26453077 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
26453094 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
26453157 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
26453174 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26453199 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 3 0.03
79 55 0.60
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:26453198 original size:40 final size:40
Alignment explanation
Indices: 26452995--26453198 Score: 238
Period size: 40 Copynumber: 5.1 Consensus size: 40
26452985 CGGAATTTAA
** *
26452995 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26453035 CCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
26453075 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26453114 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
26453154 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
26453194 CCGGA
1 CCGGA
26453199 CATCATTCAA
Statistics
Matches: 141, Mismatches: 16, Indels: 14
0.82 0.09 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.23
40 94 0.67
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26457787 original size:47 final size:47
Alignment explanation
Indices: 26457728--26458058 Score: 540
Period size: 47 Copynumber: 7.1 Consensus size: 47
26457718 GAAATGATAG
*
26457728 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26457775 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
26457822 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26457869 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGT-A
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26457915 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26457962 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
26458008 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
26458055 TAAG
1 TAAG
26458059 TCCCGAAGGG
Statistics
Matches: 270, Mismatches: 12, Indels: 4
0.94 0.04 0.01
Matches are distributed among these distances:
46 86 0.32
47 184 0.68
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:26457980 original size:93 final size:94
Alignment explanation
Indices: 26457728--26458058 Score: 540
Period size: 93 Copynumber: 3.5 Consensus size: 94
26457718 GAAATGATAG
*
26457728 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
*
26457793 GTGATGAATGTGAAAGTGTATATGTGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
*
26457822 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
26457887 GTGATGAATGTGAAAGTGTATATATGT-A
66 GTGATGAATGTGAAAGTGTATATATGTGA
26457915 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
26457980 GTG-TGAATGTGAAAGTGTATATATGTGA
66 GTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * * *
26458008 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGATAAG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
26458059 TCCCGAAGGG
Statistics
Matches: 225, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
92 23 0.10
93 111 0.49
94 91 0.40
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.28
Consensus pattern (94 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGAT
GTGATGAATGTGAAAGTGTATATATGTGA
Found at i:26458231 original size:36 final size:37
Alignment explanation
Indices: 26458176--26458253 Score: 122
Period size: 36 Copynumber: 2.1 Consensus size: 37
26458166 CCGAGCTCTA
* *
26458176 AAGACCCGATGACTACGTGTGG-GATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
26458212 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
26458249 AAGAC
1 AAGAC
26458254 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
36 20 0.53
37 18 0.47
ACGTcount: A:0.24, C:0.19, G:0.31, T:0.26
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:26461521 original size:47 final size:47
Alignment explanation
Indices: 26461467--26461965 Score: 881
Period size: 47 Copynumber: 10.6 Consensus size: 47
26461457 TATTTGAATA
26461467 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
26461514 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
26461561 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
26461608 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
26461655 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
26461702 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
26461749 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCAATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
26461798 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
26461845 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
26461892 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
26461939 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
26461966 TCCCGAATGG
Statistics
Matches: 434, Mismatches: 16, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
47 388 0.89
49 46 0.11
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:26462259 original size:37 final size:37
Alignment explanation
Indices: 26462084--26462258 Score: 305
Period size: 37 Copynumber: 4.7 Consensus size: 37
26462074 CCGAGCTCTA
*
26462084 AAGACCCGATGACTACTTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
26462121 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
26462158 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
*
26462195 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
* * *
26462232 AAGACCCGATAACTTCATGTGGAGATT
1 AAGACCCGATGACTACGTGTGGAGATT
26462259 TCGTCTGAGC
Statistics
Matches: 133, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 133 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTATGTCCGGGT
Found at i:26464736 original size:19 final size:20
Alignment explanation
Indices: 26464698--26464736 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
26464688 ATGCTCCTTT
*
26464698 GTACATCTGTTTTCTTTTAA
1 GTACATCTGCTTTCTTTTAA
*
26464718 GTACATGTGCTTT-TTTTAA
1 GTACATCTGCTTTCTTTTAA
26464737 CAAGCATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.21, C:0.13, G:0.13, T:0.54
Consensus pattern (20 bp):
GTACATCTGCTTTCTTTTAA
Found at i:26466934 original size:25 final size:25
Alignment explanation
Indices: 26466895--26466944 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
26466885 TTCTCAAAAT
*
26466895 TTTAATTAATATAAAATATTA-ATAA
1 TTTAATAAATATAAAA-ATTAGATAA
*
26466920 TTTAATAAATTTAAAAATTAGATAA
1 TTTAATAAATATAAAAATTAGATAA
26466945 GTAAATTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.56, C:0.00, G:0.02, T:0.42
Consensus pattern (25 bp):
TTTAATAAATATAAAAATTAGATAA
Found at i:26474220 original size:8 final size:8
Alignment explanation
Indices: 26474204--26474234 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
26474194 TTAAGTTAGG
*
26474204 GGTATTTT
1 GGTAATTT
26474212 GGTAATTT
1 GGTAATTT
26474220 GGTAATTT
1 GGTAATTT
26474228 GGTAATT
1 GGTAATT
26474235 AAAATGTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.52
Consensus pattern (8 bp):
GGTAATTT
Found at i:26475098 original size:41 final size:40
Alignment explanation
Indices: 26475035--26475392 Score: 374
Period size: 41 Copynumber: 8.6 Consensus size: 40
26475025 CTTTGAATGT
* * *
26475035 AAGGGGTTGCTAAGTGCAGATTCCCCGAATCATTGATCAAA
1 AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGAT-TAA
* * *
26475076 AAGGGGTTGCTATGTGCTGATTCCCCATATCATTGATTAT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTAA
* *
26475116 AAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGA
1 AAGG-GGTTGCTAAGTGCTGATTCC-CCGTATCATTGA-T-TAA
* * *
26475160 AAGGGGATGCTATGTGCTGATTCCCCGTATCATTGATTAT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTAA
* * *
26475200 AAGGTGGTTGCTAAGTGTTGATTCCACCGTATCCTTGATTGTGA
1 AAGG-GGTTGCTAAGTGCTGATTCC-CCGTATCATTGA-T-TAA
* *
26475244 AAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTAC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTAA
* * * * *
26475284 AAGGTGGTTGGTAAGTGCTAATTCCACCATATGATTGATTTTGA
1 AAGG-GGTTGCTAAGTGCTGATTCC-CCGTATCATTGA--TTAA
* *
26475328 AAGGGGTTGCTATGTGCTGATTCCCCGTATCATTGATTAT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTAA
*
26475368 AAGGTGGTTGCTAAGTGTTGATTCC
1 AAGG-GGTTGCTAAGTGCTGATTCC
26475393 ACCGGGATCC
Statistics
Matches: 261, Mismatches: 43, Indels: 26
0.79 0.13 0.08
Matches are distributed among these distances:
40 21 0.08
41 106 0.41
42 63 0.24
43 55 0.21
44 16 0.06
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.35
Consensus pattern (40 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGTATCATTGATTAA
Found at i:26475178 original size:84 final size:84
Alignment explanation
Indices: 26475034--26475396 Score: 552
Period size: 84 Copynumber: 4.4 Consensus size: 84
26475024 TCTTTGAATG
* * ***
26475034 TAAGG-GGTTGCTAAGTGCAGATTCC-CCGAATCATTGA-TCAAAAAGGGGTTGCTATGTGCTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCATTGATTGTGAAAGGGGTTGCTATGTGCTGA
*
26475096 TTCCCCATATCATTGATTA
66 TTCCCCGTATCATTGATTA
* *
26475115 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCCTTGATTGTGAAAGGGGATGCTATGTGCTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCATTGATTGTGAAAGGGGTTGCTATGTGCTGA
26475180 TTCCCCGTATCATTGATTA
66 TTCCCCGTATCATTGATTA
* *
26475199 TAAGGTGGTTGCTAAGTGTTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTGCTATGTGCTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCATTGATTGTGAAAGGGGTTGCTATGTGCTGA
26475264 TTCCCCGTATCATTGATTA
66 TTCCCCGTATCATTGATTA
* * * * * *
26475283 CAAGGTGGTTGGTAAGTGCTAATTCCACCATATGATTGATTTTGAAAGGGGTTGCTATGTGCTGA
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCATTGATTGTGAAAGGGGTTGCTATGTGCTGA
26475348 TTCCCCGTATCATTGATTA
66 TTCCCCGTATCATTGATTA
*
26475367 TAAGGTGGTTGCTAAGTGTTGATTCCACCG
1 TAAGGTGGTTGCTAAGTGCTGATTCCACCG
26475397 GGATCCTTTG
Statistics
Matches: 256, Mismatches: 23, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
81 5 0.02
82 19 0.07
83 10 0.04
84 222 0.87
ACGTcount: A:0.23, C:0.17, G:0.26, T:0.34
Consensus pattern (84 bp):
TAAGGTGGTTGCTAAGTGCTGATTCCACCGTATCATTGATTGTGAAAGGGGTTGCTATGTGCTGA
TTCCCCGTATCATTGATTA
Found at i:26481474 original size:30 final size:30
Alignment explanation
Indices: 26481417--26481478 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
26481407 GCTTTTTAAA
* * *
26481417 AATATTTACAAAATGAGGCATCTAATTTTT
1 AATATTTACAAAAAGAGGCACCAAATTTTT
26481447 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAGAGGC-ACCAAATTTTT
26481477 AA
1 AA
26481479 AACTAATTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 26 0.93
ACGTcount: A:0.47, C:0.11, G:0.08, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGGCACCAAATTTTT
Found at i:26491587 original size:223 final size:223
Alignment explanation
Indices: 26491192--26491627 Score: 633
Period size: 223 Copynumber: 2.0 Consensus size: 223
26491182 TAAACTGAAT
* * * * * * *
26491192 CTAATTCTGAAAAGGTTGGATTTGTTGGATTGAAATTGAATGATATAAGCGTGTATTTGACCGAA
1 CTAATTCTAAAAAGGTTGGATTAGTTAGACTGAAATTGAATGATACAAGCGGGTATTCGACCGAA
* * *
26491257 TACTTGCAGCAGACTCTAAACATAGAGCAGCGTTTGTATAGAACGAAGACAAAATAGTGCAGGGT
66 TACTTGCAGCAGACTCTAAACATAAAGCAGCGTTTGTATAGAACGAAGACAAAATAGTACACGGT
* * * * *
26491322 ATCGAGCTAAGGCCTATAGACATAGGCCAGGTAACTTGAGATCTTGC-TCTTGAAAGAAGCAAGT
131 ATCCAGCTAAGGACTATAGACACAGGCCAGGTAACGTGAGATCTTGCTTC-CGAAAGAAGCAAGT
26491386 CACTTTAGGTCTCTTCTAAACCCTAAACC
195 CACTTTAGGTCTCTTCTAAACCCTAAACC
*
26491415 CTAATTCTAAAAAGGTTGGATTAGTTAGACTGAAATTGAATGATACAAGCGGGTATTCGACTGAA
1 CTAATTCTAAAAAGGTTGGATTAGTTAGACTGAAATTGAATGATACAAGCGGGTATTCGACCGAA
* * ** *
26491480 TACTTGCAGCAGACTCTAGACATAAAGCAGTGTTTGTATAGAATTAAGACAAAATATTACACGGT
66 TACTTGCAGCAGACTCTAAACATAAAGCAGCGTTTGTATAGAACGAAGACAAAATAGTACACGGT
* *
26491545 A-CCATGCTAAGGACTATAGACACAGGCCAGGTAACGTGAGATCTTGCTTCCGAAAGAATCAGGT
131 ATCCA-GCTAAGGACTATAGACACAGGCCAGGTAACGTGAGATCTTGCTTCCGAAAGAAGCAAGT
26491609 CACTTTAGGTCTCTTCTAA
195 CACTTTAGGTCTCTTCTAA
26491628 GTAGTAGAAT
Statistics
Matches: 188, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
222 2 0.01
223 184 0.98
224 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.22, T:0.27
Consensus pattern (223 bp):
CTAATTCTAAAAAGGTTGGATTAGTTAGACTGAAATTGAATGATACAAGCGGGTATTCGACCGAA
TACTTGCAGCAGACTCTAAACATAAAGCAGCGTTTGTATAGAACGAAGACAAAATAGTACACGGT
ATCCAGCTAAGGACTATAGACACAGGCCAGGTAACGTGAGATCTTGCTTCCGAAAGAAGCAAGTC
ACTTTAGGTCTCTTCTAAACCCTAAACC
Found at i:26492166 original size:26 final size:26
Alignment explanation
Indices: 26492088--26492213 Score: 146
Period size: 26 Copynumber: 4.8 Consensus size: 26
26492078 GGCACATTCC
* *
26492088 ATCATAGTATCACAGCC-AAGTGTGTA
1 ATCACAGTATCACA-CCGAAGTGTGCA
** * * **
26492114 ATCTGAATATCACATCGAAGTACGCA
1 ATCACAGTATCACACCGAAGTGTGCA
26492140 ATCACAGTATCACACCGAAGTGTGCA
1 ATCACAGTATCACACCGAAGTGTGCA
*
26492166 ATCACAGTATCGCACCGAAGTGTGCA
1 ATCACAGTATCACACCGAAGTGTGCA
*
26492192 ATCACAGTATCGCACCGAAGTG
1 ATCACAGTATCACACCGAAGTG
26492214 CTCATCAATT
Statistics
Matches: 85, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
25 1 0.01
26 84 0.99
ACGTcount: A:0.34, C:0.25, G:0.20, T:0.21
Consensus pattern (26 bp):
ATCACAGTATCACACCGAAGTGTGCA
Found at i:26495761 original size:262 final size:262
Alignment explanation
Indices: 26495296--26495820 Score: 1050
Period size: 262 Copynumber: 2.0 Consensus size: 262
26495286 AATCTTTTGT
26495296 ATGTGTGTGTTGTTAATGAATAGAAAGAGAAGAGATGTGAACAATAAGGACTTGATAAAGGAAAT
1 ATGTGTGTGTTGTTAATGAATAGAAAGAGAAGAGATGTGAACAATAAGGACTTGATAAAGGAAAT
26495361 GATATAGCAAAAGAGTGAAGAAAGGAGAAAAGAACTCATTCCCAAGCAGTTGATAGTAAGTACTT
66 GATATAGCAAAAGAGTGAAGAAAGGAGAAAAGAACTCATTCCCAAGCAGTTGATAGTAAGTACTT
26495426 CAAGAATTTCACTTTACCATATTAAGACCTAAGTGAAATTTTTTTAAATTGGTTTTAGTAATATT
131 CAAGAATTTCACTTTACCATATTAAGACCTAAGTGAAATTTTTTTAAATTGGTTTTAGTAATATT
26495491 TATTAATTTTTATTTATATAAGAAAATGTTAAGGTATATTATGGAATTTAACTATAAGTGAAGAT
196 TATTAATTTTTATTTATATAAGAAAATGTTAAGGTATATTATGGAATTTAACTATAAGTGAAGAT
26495556 GA
261 GA
26495558 ATGTGTGTGTTGTTAATGAATAGAAAGAGAAGAGATGTGAACAATAAGGACTTGATAAAGGAAAT
1 ATGTGTGTGTTGTTAATGAATAGAAAGAGAAGAGATGTGAACAATAAGGACTTGATAAAGGAAAT
26495623 GATATAGCAAAAGAGTGAAGAAAGGAGAAAAGAACTCATTCCCAAGCAGTTGATAGTAAGTACTT
66 GATATAGCAAAAGAGTGAAGAAAGGAGAAAAGAACTCATTCCCAAGCAGTTGATAGTAAGTACTT
26495688 CAAGAATTTCACTTTACCATATTAAGACCTAAGTGAAATTTTTTTAAATTGGTTTTAGTAATATT
131 CAAGAATTTCACTTTACCATATTAAGACCTAAGTGAAATTTTTTTAAATTGGTTTTAGTAATATT
26495753 TATTAATTTTTATTTATATAAGAAAATGTTAAGGTATATTATGGAATTTAACTATAAGTGAAGAT
196 TATTAATTTTTATTTATATAAGAAAATGTTAAGGTATATTATGGAATTTAACTATAAGTGAAGAT
26495818 GA
261 GA
26495820 A
1 A
26495821 CTTTTAAAAT
Statistics
Matches: 263, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
262 263 1.00
ACGTcount: A:0.41, C:0.07, G:0.19, T:0.33
Consensus pattern (262 bp):
ATGTGTGTGTTGTTAATGAATAGAAAGAGAAGAGATGTGAACAATAAGGACTTGATAAAGGAAAT
GATATAGCAAAAGAGTGAAGAAAGGAGAAAAGAACTCATTCCCAAGCAGTTGATAGTAAGTACTT
CAAGAATTTCACTTTACCATATTAAGACCTAAGTGAAATTTTTTTAAATTGGTTTTAGTAATATT
TATTAATTTTTATTTATATAAGAAAATGTTAAGGTATATTATGGAATTTAACTATAAGTGAAGAT
GA
Found at i:26499085 original size:50 final size:50
Alignment explanation
Indices: 26498962--26499102 Score: 169
Period size: 50 Copynumber: 2.8 Consensus size: 50
26498952 CACTATCCAA
* *
26498962 TACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTATTTGG
1 TACACGTAGTAGCCTGCACATAGTACTACACATGTGA-CCAAGCTATTTGG
* * * *
26499013 TA-AGCATAGTAGCCTGCACATAGTACTACACATGCGACCTATCT-TTCTGG
1 TACA-CGTAGTAGCCTGCACATAGTACTACACATGTGACCAAGCTATT-TGG
* *
26499063 TACACGTAGTAGCTTGCACATAGTATTACACATGTGACCA
1 TACACGTAGTAGCCTGCACATAGTACTACACATGTGACCA
26499103 TCACTTTCAC
Statistics
Matches: 76, Mismatches: 11, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
49 2 0.03
50 41 0.54
51 33 0.43
ACGTcount: A:0.30, C:0.24, G:0.19, T:0.27
Consensus pattern (50 bp):
TACACGTAGTAGCCTGCACATAGTACTACACATGTGACCAAGCTATTTGG
Found at i:26514552 original size:40 final size:40
Alignment explanation
Indices: 26514496--26514686 Score: 235
Period size: 40 Copynumber: 4.8 Consensus size: 40
26514486 TATAACCACA
* * * * *
26514496 AGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT
* *
26514536 CGCACAAATGCCTTC-GGTCTTAGCCCGGAT-ATATCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACT
*
26514575 CGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
* *
26514615 AGCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
* *
26514655 AGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
26514687 TCATTCAAAT
Statistics
Matches: 140, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
39 36 0.26
40 100 0.71
41 4 0.03
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACT
Found at i:26516977 original size:23 final size:23
Alignment explanation
Indices: 26516918--26516978 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
26516908 TTGTCGATTC
*
26516918 TGTGGAAGCCTTTATGGCTATTA
1 TGTGGAAGCCTTTGTGGCTATTA
* * *
26516941 TGTGGAAGCCTTTGTGGTTGTTT
1 TGTGGAAGCCTTTGTGGCTATTA
26516964 TGTGGAAGCCTTTGT
1 TGTGGAAGCCTTTGT
26516979 AGCAGTTCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.15, C:0.11, G:0.31, T:0.43
Consensus pattern (23 bp):
TGTGGAAGCCTTTGTGGCTATTA
Found at i:26517681 original size:4 final size:4
Alignment explanation
Indices: 26517640--26517709 Score: 56
Period size: 4 Copynumber: 17.5 Consensus size: 4
26517630 AGATTTGATG
* * *
26517640 TGTA TGGA TGAA TGT- TGTGA TGT- TGTA TGTT TGTTA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGT-A TGTA TGTA TGTA TG-TA TGTA TGTA TGTA
*
26517688 TATAA TGT- TGTA TGTA TGTA TG
1 TGT-A TGTA TGTA TGTA TGTA TG
26517710 ATAATGCCTT
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
3 9 0.17
4 35 0.66
5 9 0.17
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:26517699 original size:20 final size:21
Alignment explanation
Indices: 26517676--26517715 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
26517666 ATGTTTGTTA
26517676 TGTATGTATGTAT-ATAATGT
1 TGTATGTATGTATGATAATGT
26517696 TGTATGTATGTATGATAATG
1 TGTATGTATGTATGATAATG
26517716 CCTTGCTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 13 0.68
21 6 0.32
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (21 bp):
TGTATGTATGTATGATAATGT
Found at i:26519080 original size:30 final size:30
Alignment explanation
Indices: 26519046--26519112 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
26519036 AGAAAGATGG
*
26519046 AAAATGGCAACTCTGTTATGTCTGTAACGA
1 AAAATGGCAACTCTGTTATGTCTATAACGA
* ** *
26519076 AAAATGGTAGTTTTGTTATGTCTATAACGA
1 AAAATGGCAACTCTGTTATGTCTATAACGA
26519106 AAAATGG
1 AAAATGG
26519113 TTAGTGTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.36, C:0.10, G:0.21, T:0.33
Consensus pattern (30 bp):
AAAATGGCAACTCTGTTATGTCTATAACGA
Found at i:26520089 original size:21 final size:21
Alignment explanation
Indices: 26520065--26520109 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
26520055 AAATAAAAAC
* *
26520065 AAAATAATA-ATGACAATACTA
1 AAAATAAAATATG-CAATAATA
26520086 AAAATAAAATATGCAATAATA
1 AAAATAAAATATGCAATAATA
26520107 AAA
1 AAA
26520110 GCATGTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.67, C:0.07, G:0.04, T:0.22
Consensus pattern (21 bp):
AAAATAAAATATGCAATAATA
Found at i:26520190 original size:3 final size:3
Alignment explanation
Indices: 26520178--26520210 Score: 59
Period size: 3 Copynumber: 11.3 Consensus size: 3
26520168 ATAGTAGACC
26520178 ATA A-A ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
26520211 AGGCACAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 2 0.07
3 27 0.93
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (3 bp):
ATA
Found at i:26520336 original size:4 final size:4
Alignment explanation
Indices: 26520319--26520352 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
26520309 GCGAAGGAAT
* *
26520319 AATA AATA AGTA AATA AATA AATA AACA AATA AA
1 AATA AATA AATA AATA AATA AATA AATA AATA AA
26520353 AGAATGAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (4 bp):
AATA
Found at i:26520377 original size:65 final size:65
Alignment explanation
Indices: 26520302--26520424 Score: 219
Period size: 65 Copynumber: 1.9 Consensus size: 65
26520292 TTTAAATATT
*
26520302 AAAAGAAGCGAAGGAATAATAAATAAGTAAATAAATAAATAAACAAATAAAAGAATGAAAATAAG
1 AAAAGAAGCGAAGGAATAATAAATAAGAAAATAAATAAATAAACAAATAAAAGAATGAAAATAAG
* *
26520367 AAAATAAGCGAAGGAATAATAAATAAGAAAATAAGTAAATAAACAAATAAAAGAATGA
1 AAAAGAAGCGAAGGAATAATAAATAAGAAAATAAATAAATAAACAAATAAAAGAATGA
26520425 TAATGAGTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 55 1.00
ACGTcount: A:0.67, C:0.03, G:0.14, T:0.15
Consensus pattern (65 bp):
AAAAGAAGCGAAGGAATAATAAATAAGAAAATAAATAAATAAACAAATAAAAGAATGAAAATAAG
Found at i:26520399 original size:12 final size:12
Alignment explanation
Indices: 26520319--26520400 Score: 51
Period size: 12 Copynumber: 6.4 Consensus size: 12
26520309 GCGAAGGAAT
*
26520319 AATAAATAAGTA
1 AATAAATAAGAA
26520331 AATAAATAA-ATA
1 AATAAATAAGA-A
*
26520343 AACAAATAA-AA
1 AATAAATAAGAA
26520354 GAATGAAAATAAGAA
1 -AAT--AAATAAGAA
**
26520369 AATAAGCGAAGGAA
1 AATAA-ATAA-GAA
26520383 TAATAAATAAGAA
1 -AATAAATAAGAA
26520396 AATAA
1 AATAA
26520401 GTAAATAAAC
Statistics
Matches: 55, Mismatches: 7, Indels: 16
0.71 0.09 0.21
Matches are distributed among these distances:
11 1 0.02
12 28 0.51
13 5 0.09
14 14 0.25
15 7 0.13
ACGTcount: A:0.70, C:0.02, G:0.11, T:0.17
Consensus pattern (12 bp):
AATAAATAAGAA
Found at i:26520416 original size:16 final size:15
Alignment explanation
Indices: 26520316--26520408 Score: 57
Period size: 16 Copynumber: 5.8 Consensus size: 15
26520306 GAAGCGAAGG
*
26520316 AATAATAAATAAGTA
1 AATAATAAATAAGAA
26520331 AATAAATAAATAA-ACA
1 AAT-AATAAATAAGA-A
*
26520347 AATAA-AAGA-ATGAA
1 AATAATAA-ATAAGAA
*
26520361 AATAAGAAAATAAGCGAA
1 AATAA-TAAATAA--GAA
26520379 GGAATAATAAATAAGAA
1 --AATAATAAATAAGAA
26520396 AATAAGTAAATAA
1 AATAA-TAAATAA
26520409 ACAAATAAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 23
0.70 0.04 0.26
Matches are distributed among these distances:
14 9 0.15
15 13 0.21
16 23 0.37
17 3 0.05
18 3 0.05
19 6 0.10
20 5 0.08
ACGTcount: A:0.69, C:0.02, G:0.11, T:0.18
Consensus pattern (15 bp):
AATAATAAATAAGAA
Found at i:26521667 original size:23 final size:23
Alignment explanation
Indices: 26521637--26521694 Score: 107
Period size: 23 Copynumber: 2.5 Consensus size: 23
26521627 CATCTATTTT
*
26521637 TTTGTTTGGGTTGATTGGTTTGG
1 TTTGTTTGGGCTGATTGGTTTGG
26521660 TTTGTTTGGGCTGATTGGTTTGG
1 TTTGTTTGGGCTGATTGGTTTGG
26521683 TTTGTTTGGGCT
1 TTTGTTTGGGCT
26521695 CGGAAAAAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 34 1.00
ACGTcount: A:0.03, C:0.03, G:0.38, T:0.55
Consensus pattern (23 bp):
TTTGTTTGGGCTGATTGGTTTGG
Found at i:26522106 original size:44 final size:45
Alignment explanation
Indices: 26522057--26522337 Score: 221
Period size: 44 Copynumber: 6.2 Consensus size: 45
26522047 AGATGTATAT
* * *
26522057 GATTTGTCGCTTCAATCTGCTCCACCT-CAAC-TTCAGGGAGATAA
1 GATTTGTAGCTTTAATCTGCTCCA-CTACAACTTTCAGGGAAATAA
* * **
26522101 GATTTGTAACTCGTAGCTTTAATCTGTTCCACTGCAACTTTTTGGGAAATAA
1 GATTTG-------TAGCTTTAATCTGCTCCACTACAACTTTCAGGGAAATAA
* *
26522153 GATTTGTAGCTTTAATCTACTCCACTACAACTTTCAAGGAAATAA
1 GATTTGTAGCTTTAATCTGCTCCACTACAACTTTCAGGGAAATAA
* * *
26522198 GGTTTGTAGCTTTAATCTGCTCCACTACAA-ATTCAGGGAGATAA
1 GATTTGTAGCTTTAATCTGCTCCACTACAACTTTCAGGGAAATAA
* ** * **
26522242 GATTTGTAGCTTTAATATGCTCCACTGTAAC-TCCAAAGAAATAA
1 GATTTGTAGCTTTAATCTGCTCCACTACAACTTTCAGGGAAATAA
* * * * * ** *
26522286 GATTCGCAACTTTAATCCGCTCCACTGCAAC-TTCAAAGAGATAA
1 GATTTGTAGCTTTAATCTGCTCCACTACAACTTTCAGGGAAATAA
26522330 GATTTGTA
1 GATTTGTA
26522338 ACTCCAATCT
Statistics
Matches: 192, Mismatches: 35, Indels: 20
0.78 0.14 0.08
Matches are distributed among these distances:
44 94 0.49
45 61 0.32
50 2 0.01
51 19 0.10
52 16 0.08
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.32
Consensus pattern (45 bp):
GATTTGTAGCTTTAATCTGCTCCACTACAACTTTCAGGGAAATAA
Found at i:26522177 original size:45 final size:45
Alignment explanation
Indices: 26522113--26522337 Score: 222
Period size: 44 Copynumber: 5.1 Consensus size: 45
26522103 TTTGTAACTC
* * **
26522113 GTAGCTTTAATCTGTTCCACTGCAACTTTTTGGGAAATAAGATTT
1 GTAGCTTTAATCTGCTCCACTACAACTTTCAGGGAAATAAGATTT
* * *
26522158 GTAGCTTTAATCTACTCCACTACAACTTTCAAGGAAATAAGGTTT
1 GTAGCTTTAATCTGCTCCACTACAACTTTCAGGGAAATAAGATTT
* *
26522203 GTAGCTTTAATCTGCTCCACTACAA-ATTCAGGGAGATAAGATTT
1 GTAGCTTTAATCTGCTCCACTACAACTTTCAGGGAAATAAGATTT
* ** * ** *
26522247 GTAGCTTTAATATGCTCCACTGTAAC-TCCAAAGAAATAAGATTC
1 GTAGCTTTAATCTGCTCCACTACAACTTTCAGGGAAATAAGATTT
* * * * ** *
26522291 GCAACTTTAATCCGCTCCACTGCAAC-TTCAAAGAGATAAGATTT
1 GTAGCTTTAATCTGCTCCACTACAACTTTCAGGGAAATAAGATTT
26522335 GTA
1 GTA
26522338 ACTCCAATCT
Statistics
Matches: 150, Mismatches: 29, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
44 88 0.59
45 62 0.41
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (45 bp):
GTAGCTTTAATCTGCTCCACTACAACTTTCAGGGAAATAAGATTT
Found at i:26526188 original size:11 final size:13
Alignment explanation
Indices: 26526168--26526199 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
26526158 AATAAATTAA
26526168 TAAAATATCAT-T
1 TAAAATATCATAT
26526180 TAAAA-ATCATAT
1 TAAAATATCATAT
26526192 TAAAATAT
1 TAAAATAT
26526200 TAATAAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 5 0.28
12 11 0.61
13 2 0.11
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (13 bp):
TAAAATATCATAT
Found at i:26530118 original size:20 final size:20
Alignment explanation
Indices: 26530085--26530139 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
26530075 CAACATCAAA
26530085 AAAATA-AA-AATAAAATA-
1 AAAATACAATAATAAAATAC
* *
26530102 ATAATGACGATAATAAAATAC
1 AAAAT-ACAATAATAAAATAC
26530123 AAAATACAATAATAAAA
1 AAAATACAATAATAAAA
26530140 GCATGTATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
17 4 0.13
18 1 0.03
19 1 0.03
20 20 0.67
21 4 0.13
ACGTcount: A:0.71, C:0.05, G:0.04, T:0.20
Consensus pattern (20 bp):
AAAATACAATAATAAAATAC
Found at i:26541705 original size:18 final size:18
Alignment explanation
Indices: 26541679--26541720 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
26541669 GATTGGGAAA
* *
26541679 AGGAAACATATAAGGGTT
1 AGGATACATATAAGGGCT
26541697 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
26541715 AGGATA
1 AGGATA
26541721 TTCACCTGGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.43, C:0.07, G:0.29, T:0.21
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:26550054 original size:6 final size:6
Alignment explanation
Indices: 26550045--26550084 Score: 80
Period size: 6 Copynumber: 6.7 Consensus size: 6
26550035 AGGATTAAGA
26550045 CATGCT CATGCT CATGCT CATGCT CATGCT CATGCT CATG
1 CATGCT CATGCT CATGCT CATGCT CATGCT CATGCT CATG
26550085 TTACAGTGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.17, C:0.33, G:0.17, T:0.33
Consensus pattern (6 bp):
CATGCT
Found at i:26550476 original size:135 final size:134
Alignment explanation
Indices: 26550235--26550477 Score: 432
Period size: 135 Copynumber: 1.8 Consensus size: 134
26550225 AACTGTTGAC
* *
26550235 TGCCAAAGCCAGCTTTTGGATCTGATCAATATATAAAAACTTCGTCTTTCAGTTTTATCAGTCAA
1 TGCCAAAGCCAGCTTTTGAATCTGATCAATATATAAAAACTTCGTCTATCAGTTTTATCAGTCAA
*
26550300 TGAGACAAAGATGTCAATTTCACTTTAGTTCGGGTTTTTGCATGACTTTCATATTCTCTCCCTTT
66 TGAGACAAAGATGTCAATTTCACTTTAGATCGGGTTTTTGCATGACTTTCATATTCTCTCCCTTT
26550365 TTTA
131 TTTA
*
26550369 TGCCAAAGCCAGCTTTTGAATCTGATCATTATATAAAAACTTCCGTCTATCAGTTTTATCAGTCA
1 TGCCAAAGCCAGCTTTTGAATCTGATCAATATATAAAAACTT-CGTCTATCAGTTTTATCAGTCA
*
26550434 ATGAGACAAAGATGTCAATTTTACTTTAGATCGGGTTTTTGCAT
65 ATGAGACAAAGATGTCAATTTCACTTTAGATCGGGTTTTTGCAT
26550478 TTTGTTTTAG
Statistics
Matches: 103, Mismatches: 5, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
134 40 0.39
135 63 0.61
ACGTcount: A:0.28, C:0.19, G:0.15, T:0.39
Consensus pattern (134 bp):
TGCCAAAGCCAGCTTTTGAATCTGATCAATATATAAAAACTTCGTCTATCAGTTTTATCAGTCAA
TGAGACAAAGATGTCAATTTCACTTTAGATCGGGTTTTTGCATGACTTTCATATTCTCTCCCTTT
TTTA
Found at i:26550998 original size:29 final size:30
Alignment explanation
Indices: 26550966--26551022 Score: 73
Period size: 29 Copynumber: 1.9 Consensus size: 30
26550956 ATTATTTATT
26550966 TTTAGATA-TTTAATAAATTA-TTAATATAA
1 TTTA-ATATTTTAATAAATTATTTAATATAA
* *
26550995 TTTATTATTTTAGTAAATTATTTAATAT
1 TTTAATATTTTAATAAATTATTTAATAT
26551023 TTTAATTTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 2 0.08
29 15 0.62
30 7 0.29
ACGTcount: A:0.42, C:0.00, G:0.04, T:0.54
Consensus pattern (30 bp):
TTTAATATTTTAATAAATTATTTAATATAA
Found at i:26564807 original size:21 final size:21
Alignment explanation
Indices: 26564762--26564807 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
26564752 TTCTCATTTT
*
26564762 CAACAATTTCCTCTTCTTTAG
1 CAACAATTTCCTCTTCTTTAA
*
26564783 CAACAATTTCCT-TTTTTGTAA
1 CAACAATTTCCTCTTCTT-TAA
26564804 CAAC
1 CAAC
26564808 TTTTGCTTCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.28, C:0.26, G:0.04, T:0.41
Consensus pattern (21 bp):
CAACAATTTCCTCTTCTTTAA
Found at i:26570928 original size:21 final size:21
Alignment explanation
Indices: 26570902--26570944 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
26570892 ATTGGGTGAA
*
26570902 TCAACTTTTACGAGCTTCTGT
1 TCAACTCTTACGAGCTTCTGT
26570923 TCAACTCTTACGAGCTTCTGT
1 TCAACTCTTACGAGCTTCTGT
26570944 T
1 T
26570945 GACATAATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.26, G:0.14, T:0.42
Consensus pattern (21 bp):
TCAACTCTTACGAGCTTCTGT
Found at i:26573715 original size:21 final size:22
Alignment explanation
Indices: 26573686--26573730 Score: 58
Period size: 21 Copynumber: 2.1 Consensus size: 22
26573676 CTGATTGTAG
*
26573686 TTCTGCTA-CTGTTGATTATAAT
1 TTCTGCTACCTG-GGATTATAAT
26573708 TTCT-CTACCTGGGATTATAAT
1 TTCTGCTACCTGGGATTATAAT
26573729 TT
1 TT
26573731 TCCTAAGTAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.22, C:0.16, G:0.13, T:0.49
Consensus pattern (22 bp):
TTCTGCTACCTGGGATTATAAT
Found at i:26585090 original size:22 final size:22
Alignment explanation
Indices: 26585062--26585109 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
26585052 CCTTCATGGA
26585062 CTAAGTAGAATTGGAATGATCG
1 CTAAGTAGAATTGGAATGATCG
26585084 CTAAGTAGAATTGGAATGATCG
1 CTAAGTAGAATTGGAATGATCG
26585106 CTAA
1 CTAA
26585110 AGGGGAATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.38, C:0.10, G:0.25, T:0.27
Consensus pattern (22 bp):
CTAAGTAGAATTGGAATGATCG
Found at i:26586653 original size:48 final size:48
Alignment explanation
Indices: 26586582--26586761 Score: 288
Period size: 48 Copynumber: 3.7 Consensus size: 48
26586572 AAAAAAAATC
*
26586582 ATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
* * *
26586630 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
*
26586678 ATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATAT
1 ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
*
26586726 ATTTCACATTAGCCATTCGGCCTTATCACACATATA
1 ATTTCACATTAGCCATTCGGCTTTA-C-CACATATA
26586762 TATACGGGTT
Statistics
Matches: 120, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
48 111 0.93
49 1 0.01
50 8 0.07
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
ATTTCACATTAGCCATTCGGCTTTACCACATATACATATCACACATAT
Found at i:26586698 original size:96 final size:98
Alignment explanation
Indices: 26586582--26586761 Score: 337
Period size: 96 Copynumber: 1.9 Consensus size: 98
26586572 AAAAAAAATC
26586582 ATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATT
1 ATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATT
*
26586647 CGGCTTTA-C-CACATATACATATCTCATACAT
66 CGGCCTTATCACACATATACATATCTCATACAT
26586678 ATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATT
1 ATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATT
26586743 CGGCCTTATCACACATATA
66 CGGCCTTATCACACATATA
26586762 TATACGGGTT
Statistics
Matches: 81, Mismatches: 1, Indels: 2
0.96 0.01 0.02
Matches are distributed among these distances:
96 72 0.89
97 1 0.01
98 8 0.10
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (98 bp):
ATTTCACATTCGCCATTCGGCTTTACCACATATACATATCACACATATATTTCACATTAGCCATT
CGGCCTTATCACACATATACATATCTCATACAT
Found at i:26590325 original size:44 final size:44
Alignment explanation
Indices: 26590277--26590365 Score: 133
Period size: 44 Copynumber: 2.0 Consensus size: 44
26590267 AGGGTAAATC
* * *
26590277 CAACAACCCATGTTTATCTTTTCCTATTTTTAAATTCTTCTTTT
1 CAACAACCCAAGATTATCTTCTCCTATTTTTAAATTCTTCTTTT
* *
26590321 CAACAACCCAAGATTATCTTCTCCTATTTTTTAATTCTTTTTTT
1 CAACAACCCAAGATTATCTTCTCCTATTTTTAAATTCTTCTTTT
26590365 C
1 C
26590366 TAGGATAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.24, C:0.24, G:0.02, T:0.51
Consensus pattern (44 bp):
CAACAACCCAAGATTATCTTCTCCTATTTTTAAATTCTTCTTTT
Found at i:26596793 original size:43 final size:43
Alignment explanation
Indices: 26596727--26596869 Score: 214
Period size: 43 Copynumber: 3.3 Consensus size: 43
26596717 ATTTATAAGA
* * *
26596727 CTTTAGCAGTGTTTGTGGAAAAAGCGCCGCTAAAGATCATGAT
1 CTTTAGCAGCGTTTGTGGTAAAAGCGCCGCTAAAGACCATGAT
*
26596770 CTTTAGCGGCGTTTGTGGTAAAAGCGCCGCTAAAGACCATGAT
1 CTTTAGCAGCGTTTGTGGTAAAAGCGCCGCTAAAGACCATGAT
* * *
26596813 CTTTAGCAACGTTTGGGGTAAAAGCGCTGCTAAAGACCATGAT
1 CTTTAGCAGCGTTTGTGGTAAAAGCGCCGCTAAAGACCATGAT
*
26596856 CTTTAGCGGCGTTT
1 CTTTAGCAGCGTTT
26596870 TTTCACATAA
Statistics
Matches: 90, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 90 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (43 bp):
CTTTAGCAGCGTTTGTGGTAAAAGCGCCGCTAAAGACCATGAT
Found at i:26599524 original size:49 final size:50
Alignment explanation
Indices: 26599429--26599531 Score: 118
Period size: 51 Copynumber: 2.1 Consensus size: 50
26599419 AAATATGGTA
** *
26599429 GTTATAATTCTCTTTGGAAAGAATATAATGTTTTTTTAATACTTTCCACAT
1 GTTATAATTCTCTTTGGAAAGAATATAA-GCATGTTTAATACTTTCCACAT
* * ** *
26599480 GTTATAATTCTTTTTGGAAAGAGTATAA-CATGTTTAATGTTTTCCATAT
1 GTTATAATTCTCTTTGGAAAGAATATAAGCATGTTTAATACTTTCCACAT
26599529 GTT
1 GTT
26599532 CTCTATAAGA
Statistics
Matches: 44, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
49 18 0.41
51 26 0.59
ACGTcount: A:0.30, C:0.10, G:0.13, T:0.48
Consensus pattern (50 bp):
GTTATAATTCTCTTTGGAAAGAATATAAGCATGTTTAATACTTTCCACAT
Found at i:26604225 original size:58 final size:58
Alignment explanation
Indices: 26604163--26604331 Score: 255
Period size: 58 Copynumber: 3.1 Consensus size: 58
26604153 AAAATCATTT
* *
26604163 TATTTAAATATATTTTATTTAAACTTAATTATTATTTCTATTTAAATTAATATTTAAA
1 TATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAATTAATATTTAAA
*
26604221 TATTTAAATATATTTTATTTAAACTTATTTATTAATTCTA--T---TTAA-A-CT-AA
1 TATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAATTAATATTTAAA
26604271 TATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAATTAATATTTAAA
1 TATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAATTAATATTTAAA
26604329 TAT
1 TAT
26604332 ATCAAATGGT
Statistics
Matches: 99, Mismatches: 4, Indels: 16
0.83 0.03 0.13
Matches are distributed among these distances:
50 42 0.42
51 1 0.01
52 2 0.02
53 4 0.04
55 4 0.04
56 2 0.02
57 1 0.01
58 43 0.43
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (58 bp):
TATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAATTAATATTTAAA
Found at i:26604243 original size:23 final size:23
Alignment explanation
Indices: 26604213--26604333 Score: 77
Period size: 25 Copynumber: 4.9 Consensus size: 23
26604203 TTTAAATTAA
26604213 TATTTAAATATTTAAATATATTT
1 TATTTAAATATTTAAATATATTT
* *
26604236 TATTTAAACTTATTT-ATTA-ATTC
1 TATTTAAA--TATTTAAATATATTT
26604259 TATTTAAACTAATATTTAAATATATTT
1 TATTT--A--AATATTTAAATATATTT
*
26604286 TATTTAAACTTATTTATTAATTCTATTT
1 TATTTAAA--TATTTA--AA-TATATTT
* *
26604314 AAATT-AATATTTAAATATAT
1 TATTTAAATATTTAAATATAT
26604334 CAAATGGTTT
Statistics
Matches: 77, Mismatches: 8, Indels: 27
0.69 0.07 0.24
Matches are distributed among these distances:
22 4 0.05
23 20 0.26
24 3 0.04
25 24 0.31
26 3 0.04
27 14 0.18
28 9 0.12
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (23 bp):
TATTTAAATATTTAAATATATTT
Found at i:26604276 original size:50 final size:50
Alignment explanation
Indices: 26604163--26604333 Score: 243
Period size: 50 Copynumber: 3.3 Consensus size: 50
26604153 AAAATCATTT
* *
26604163 TATTTAAATATATTTTATTTAAACTTAATTATTATTTCTATTTAAATTAATATTTAAA
1 TATTTAAATATATTTTATTTAAACTTATTTATTAATTCTA--T---TTAA-A-TT-AA
*
26604221 TATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAACTAA
1 TATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAATTAA
26604271 TATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAATTAA
1 TATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAATTAA
26604321 TATTTAAATATAT
1 TATTTAAATATAT
26604334 CAAATGGTTT
Statistics
Matches: 109, Mismatches: 4, Indels: 8
0.90 0.03 0.07
Matches are distributed among these distances:
50 64 0.59
51 1 0.01
52 1 0.01
53 4 0.04
56 1 0.01
58 38 0.35
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (50 bp):
TATTTAAATATATTTTATTTAAACTTATTTATTAATTCTATTTAAATTAA
Found at i:26604732 original size:35 final size:36
Alignment explanation
Indices: 26604656--26604746 Score: 100
Period size: 35 Copynumber: 2.6 Consensus size: 36
26604646 CCCATAAAGT
* *
26604656 CTAACCCCCAAACCCCTAACCCTAAACCTTAAATCC
1 CTAACCCCTAAACCCCTAACCCTAAACCTCAAATCC
* *
26604692 C-AACCCTTAAACCCCTAAACCCT-AA-CTCGAATCC
1 CTAACCCCTAAACCCCT-AACCCTAAACCTCAAATCC
*
26604726 CTAACCCCTAAA-CTCTAACCC
1 CTAACCCCTAAACCCCTAACCC
26604747 AAATCCCTAA
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
33 5 0.11
34 11 0.23
35 24 0.51
36 7 0.15
ACGTcount: A:0.35, C:0.46, G:0.01, T:0.18
Consensus pattern (36 bp):
CTAACCCCTAAACCCCTAACCCTAAACCTCAAATCC
Found at i:26604743 original size:27 final size:27
Alignment explanation
Indices: 26604662--26604756 Score: 88
Period size: 27 Copynumber: 3.5 Consensus size: 27
26604652 AAGTCTAACC
* *
26604662 CCCAAACCCCTAA-CCCTAAACCTTAAA
1 CCCAAATCCCTAACCCCTAAACCCT-AA
26604689 TCCC-AA-CCCTTAAACCCCTAAACCCTAA
1 -CCCAAATCCC-T-AACCCCTAAACCCTAA
* * *
26604717 CTCGAATCCCTAACCCCTAAACTCTAA
1 CCCAAATCCCTAACCCCTAAACCCTAA
26604744 CCCAAATCCCTAA
1 CCCAAATCCCTAA
26604757 ACCAATTAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 11
0.78 0.07 0.15
Matches are distributed among these distances:
26 3 0.05
27 31 0.54
28 10 0.18
29 13 0.23
ACGTcount: A:0.37, C:0.44, G:0.01, T:0.18
Consensus pattern (27 bp):
CCCAAATCCCTAACCCCTAAACCCTAA
Found at i:26604818 original size:7 final size:7
Alignment explanation
Indices: 26604806--26604853 Score: 55
Period size: 7 Copynumber: 7.0 Consensus size: 7
26604796 ACTAATTAAT
26604806 CTAAACC
1 CTAAACC
26604813 CTAAACC
1 CTAAACC
26604820 CTAAACC
1 CTAAACC
26604827 CT-AA-C
1 CTAAACC
*
26604832 CTAAATAC
1 CTAAA-CC
*
26604840 CTAACCC
1 CTAAACC
26604847 CTAAACC
1 CTAAACC
26604854 TTATTTAATA
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
5 3 0.09
6 4 0.11
7 23 0.66
8 5 0.14
ACGTcount: A:0.42, C:0.42, G:0.00, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:26605005 original size:14 final size:15
Alignment explanation
Indices: 26604986--26605018 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
26604976 CTTAAACCAG
26604986 AATCCCTAA-TCCAT
1 AATCCCTAATTCCAT
26605000 AATCCCTAATTCCAT
1 AATCCCTAATTCCAT
26605015 AATC
1 AATC
26605019 TATAAACCTT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.36, C:0.33, G:0.00, T:0.30
Consensus pattern (15 bp):
AATCCCTAATTCCAT
Found at i:26605089 original size:14 final size:14
Alignment explanation
Indices: 26605067--26605103 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
26605057 ATCCTAAATT
26605067 AACCATATACCCTA
1 AACCATATACCCTA
*
26605081 AATCATATACCCTA
1 AACCATATACCCTA
26605095 AACCATATA
1 AACCATATA
26605104 TATTAAACCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.30, G:0.00, T:0.24
Consensus pattern (14 bp):
AACCATATACCCTA
Found at i:26605497 original size:41 final size:41
Alignment explanation
Indices: 26605415--26605759 Score: 399
Period size: 41 Copynumber: 8.4 Consensus size: 41
26605405 AAATATTTTT
* * * * *
26605415 GCGGCACTTTTTCAAAAACGTCGCTAAAG-CACTGAGAATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAGAC-CAGAGCATTA
* * * *
26605456 GCGGTGCTTTTTCAAAAACGCCGCAAAAGACTAGAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAGACCAGAGCATTA
* *
26605497 GCGGCAC-TTTTCTAAAAATGCCGCTAAAGACTAGAGCATTA
1 GCGGCGCTTTTTC-AAAAATGCCGCTAAAGACCAGAGCATTA
* * * * *
26605538 GCGGCGCTTTTTTAAAAATGCTGCCAAAGTCCCGAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAGACCAGAGCATTA
*
26605579 GCGGCGCTTTTTCAAAAATACCGCTAAAGACCAGAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAGACCAGAGCATTA
* * * *
26605620 GCAGCGCTTTTTCAAAAACGCCGCTAAAGCCCCGAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAGACCAGAGCATTA
* *
26605661 GCGGCGCTTTTTC-AAAATGCCGCTAAAGCCCTGAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAGACCAGAGCATTA
* * * * *
26605701 GCGGTGCTTTTTCAAAAATGTCGGTAACGTCCAGAGCATTA
1 GCGGCGCTTTTTCAAAAATGCCGCTAAAGACCAGAGCATTA
26605742 GCGGCGCTTTTTCAAAAA
1 GCGGCGCTTTTTCAAAAA
26605760 CACCTCTAAA
Statistics
Matches: 261, Mismatches: 39, Indels: 8
0.85 0.13 0.03
Matches are distributed among these distances:
40 42 0.16
41 214 0.82
42 5 0.02
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.24
Consensus pattern (41 bp):
GCGGCGCTTTTTCAAAAATGCCGCTAAAGACCAGAGCATTA
Found at i:26613045 original size:19 final size:19
Alignment explanation
Indices: 26613023--26613075 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
26613013 GATGAGCAAG
26613023 AAAAGAAAAATGAAAAAT-A
1 AAAAGAAAAA-GAAAAATGA
*
26613042 AAAAG-AAGAGAAAAATGA
1 AAAAGAAAAAGAAAAATGA
*
26613060 CAAAGAAAAAGAAAAA
1 AAAAGAAAAAGAAAAA
26613076 GAGTCAGAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
17 7 0.24
18 8 0.28
19 14 0.48
ACGTcount: A:0.77, C:0.02, G:0.15, T:0.06
Consensus pattern (19 bp):
AAAAGAAAAAGAAAAATGA
Found at i:26613053 original size:24 final size:24
Alignment explanation
Indices: 26613020--26613074 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
26613010 ACGGATGAGC
*
26613020 AAGAAAAGAAAAATGAAAAATAAA
1 AAGAAAAGAAAAATGAAAAAGAAA
* *
26613044 AAGAAGAGAAAAATGACAAAGAAA
1 AAGAAAAGAAAAATGAAAAAGAAA
26613068 AAGAAAA
1 AAGAAAA
26613075 AGAGTCAGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.76, C:0.02, G:0.16, T:0.05
Consensus pattern (24 bp):
AAGAAAAGAAAAATGAAAAAGAAA
Found at i:26613072 original size:6 final size:6
Alignment explanation
Indices: 26613023--26613077 Score: 58
Period size: 6 Copynumber: 9.0 Consensus size: 6
26613013 GATGAGCAAG
* * *
26613023 AAAAGA AAAATGA AAAATA AAAAG- AAGAGA AAAATGA CAAAGA AAAAGA
1 AAAAGA AAAA-GA AAAAGA AAAAGA AAAAGA AAAA-GA AAAAGA AAAAGA
26613072 AAAAGA
1 AAAAGA
26613078 GTCAGAAAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 6
0.77 0.12 0.12
Matches are distributed among these distances:
5 4 0.10
6 25 0.62
7 11 0.28
ACGTcount: A:0.76, C:0.02, G:0.16, T:0.05
Consensus pattern (6 bp):
AAAAGA
Found at i:26615278 original size:20 final size:20
Alignment explanation
Indices: 26615253--26615292 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
26615243 TAAATAGGTG
*
26615253 GCTGGACATTCATTTATGCA
1 GCTGGACATTCATTCATGCA
26615273 GCTGGACATTCATTCATGCA
1 GCTGGACATTCATTCATGCA
26615293 TGTTGCCGAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.25, C:0.23, G:0.20, T:0.33
Consensus pattern (20 bp):
GCTGGACATTCATTCATGCA
Found at i:26616166 original size:27 final size:27
Alignment explanation
Indices: 26616136--26616189 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
26616126 TAAGAATCGG
26616136 GTCCATAATCTTTATTACAGGTTCATT
1 GTCCATAATCTTTATTACAGGTTCATT
* *
26616163 GTCCTTAATCTTTATTACGGGTTCATT
1 GTCCATAATCTTTATTACAGGTTCATT
26616190 CTTGTTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.22, C:0.19, G:0.13, T:0.46
Consensus pattern (27 bp):
GTCCATAATCTTTATTACAGGTTCATT
Found at i:26618746 original size:18 final size:18
Alignment explanation
Indices: 26618720--26618754 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
26618710 ACGATGTGCC
*
26618720 AAACTATTTTCATGCTTG
1 AAACCATTTTCATGCTTG
*
26618738 AAACCATTTTGATGCTT
1 AAACCATTTTCATGCTT
26618755 CCTATTCTTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.29, C:0.17, G:0.11, T:0.43
Consensus pattern (18 bp):
AAACCATTTTCATGCTTG
Found at i:26619849 original size:18 final size:17
Alignment explanation
Indices: 26619821--26619855 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
26619811 TTTAACTAAT
26619821 TAAAATAATAAAATAAA
1 TAAAATAATAAAATAAA
*
26619838 TAAAACTAATAAGATAAA
1 TAAAA-TAATAAAATAAA
26619856 AGAAAAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (17 bp):
TAAAATAATAAAATAAA
Found at i:26620227 original size:41 final size:41
Alignment explanation
Indices: 26620153--26620310 Score: 273
Period size: 41 Copynumber: 3.9 Consensus size: 41
26620143 TTTCTACCTT
26620153 TCAGATCTTTAGCGGCGTTTTTAAAAAAAGCGCCGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTT-AAAAAAGCGCCGCTAATGC
* * *
26620195 TCATATCTTTAGCGGCTTTTTTGAAAAAGCGCCGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
26620236 TCAGATCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
1 TCAGATCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
26620277 TCAGATCTTTAGCGGCGTTTTT-AAAAAGCGCCGC
1 TCAGATCTTTAGCGGCGTTTTTAAAAAAGCGCCGC
26620311 AAAAACATTT
Statistics
Matches: 110, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
40 12 0.11
41 78 0.71
42 20 0.18
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (41 bp):
TCAGATCTTTAGCGGCGTTTTTAAAAAAGCGCCGCTAATGC
Found at i:26620421 original size:27 final size:26
Alignment explanation
Indices: 26620377--26620434 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
26620367 AAAATGGATA
**
26620377 AATTTGAAATAATGACAT-GTAAAAAT
1 AATTTGAAATAAAAACATAG-AAAAAT
26620403 AATTTGAAATAAAAAACATAGAAAAAT
1 AATTTGAAAT-AAAAACATAGAAAAAT
26620430 -ATTTG
1 AATTTG
26620435 TTAAAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
26 15 0.54
27 12 0.43
28 1 0.04
ACGTcount: A:0.57, C:0.03, G:0.10, T:0.29
Consensus pattern (26 bp):
AATTTGAAATAAAAACATAGAAAAAT
Found at i:26620714 original size:14 final size:15
Alignment explanation
Indices: 26620686--26620716 Score: 55
Period size: 14 Copynumber: 2.1 Consensus size: 15
26620676 AAGGTTTATA
26620686 GATTATGGAATTAGG
1 GATTATGGAATTAGG
26620701 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
26620715 GA
1 GA
26620717 CTCTGGTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.50
15 8 0.50
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.32
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:26620759 original size:7 final size:7
Alignment explanation
Indices: 26620738--26620802 Score: 60
Period size: 7 Copynumber: 9.3 Consensus size: 7
26620728 AGGTTGTGAT
*
26620738 TTAAGGT
1 TTAAGGG
*
26620745 TTATGGG
1 TTAAGGG
26620752 TTAAGGG
1 TTAAGGG
*
26620759 TTAGGGG
1 TTAAGGG
26620766 TTAAGGG
1 TTAAGGG
26620773 TT-AGAGG
1 TTAAG-GG
*
26620780 TTAAGAG
1 TTAAGGG
*
26620787 TTAAGGA
1 TTAAGGG
*
26620794 TTTAGGG
1 TTAAGGG
26620801 TT
1 TT
26620803 TATAGATTCG
Statistics
Matches: 46, Mismatches: 10, Indels: 4
0.77 0.17 0.07
Matches are distributed among these distances:
6 2 0.04
7 42 0.91
8 2 0.04
ACGTcount: A:0.26, C:0.00, G:0.38, T:0.35
Consensus pattern (7 bp):
TTAAGGG
Found at i:26620906 original size:50 final size:51
Alignment explanation
Indices: 26620822--26620930 Score: 132
Period size: 50 Copynumber: 2.2 Consensus size: 51
26620812 GGTGTCAGAT
* *
26620822 TAAGGTTT-AGGGTTTAGATTAATTAGTGCATTTTA-ATTTATATATTAAG
1 TAAGGTTTAAGGATTTAGATTAATTAGTGCATTTTATATTTATATATTAAA
* *** * *
26620871 TAATGTTTAAGGATTTAGATTAATTAGTTTTTTTTATTTTTTTATATTAAA
1 TAAGGTTTAAGGATTTAGATTAATTAGTGCATTTTATATTTATATATTAAA
26620922 TAAGGTTTA
1 TAAGGTTTA
26620931 GAGGTTAGTT
Statistics
Matches: 49, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
49 7 0.14
50 23 0.47
51 19 0.39
ACGTcount: A:0.32, C:0.01, G:0.15, T:0.52
Consensus pattern (51 bp):
TAAGGTTTAAGGATTTAGATTAATTAGTGCATTTTATATTTATATATTAAA
Found at i:26621981 original size:75 final size:70
Alignment explanation
Indices: 26621824--26621997 Score: 210
Period size: 69 Copynumber: 2.4 Consensus size: 70
26621814 ATAATTTTTT
*
26621824 GCGGCG-TTTTAAAGAAAAACGCCACAAAAAATAATTTAACTTTAAAAAATAGCGCATAGCAAAA
1 GCGGCGTTTTTATA-AAAAACGCCACAAAAAATAATTTAACTTTAAAAAATAGCGCATAGCAAAA
26621888 CATTTA
65 CATTTA
* *
26621894 GCGGCGTTTTTAT-AAAAACGCCATAAAAAATAATTTTACTTTAAAAAATAGC-CATTTTATATA
1 GCGGCGTTTTTATAAAAAACGCCACAAAAAATAATTTAACTTTAAAAAATAGCGC-------ATA
26621957 GCAAAACATTTA
59 GCAAAACATTTA
* *
26621969 GTGGCGTTTTTATAAAAAACGCCGCAAAA
1 GCGGCGTTTTTATAAAAAACGCCACAAAA
26621998 TGTAAGCAAT
Statistics
Matches: 89, Mismatches: 6, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
68 1 0.01
69 37 0.42
70 6 0.07
71 5 0.06
75 27 0.30
76 13 0.15
ACGTcount: A:0.45, C:0.15, G:0.13, T:0.28
Consensus pattern (70 bp):
GCGGCGTTTTTATAAAAAACGCCACAAAAAATAATTTAACTTTAAAAAATAGCGCATAGCAAAAC
ATTTA
Found at i:26622055 original size:117 final size:115
Alignment explanation
Indices: 26621892--26622228 Score: 525
Period size: 117 Copynumber: 2.9 Consensus size: 115
26621882 GCAAAACATT
*
26621892 TAGCGGCGTTTTTAT-AAAAACGCCATAAAAAATAATTTTACTTTAAAAAATAGCCATTTTATAT
1 TAGCGGCGTTTTTATAAAAAACGCCACAAAAAAT-ATTTTACTTTAAAAAATAGCCATTTTATAT
* *
26621956 AGCAAAACATTTAGTGGCGTTTTTATAAAAAACGCCGCAAAATGTAAGCAA
65 AGCAAAACATTTAGCGGCGTTTTTATAAAAAACGCCGCAAAAGGTAAGCAA
* *
26622007 TAGCGGCGTTTTTATAAAAAAACGTCACAAAAAATCATTTTACTTTAAAAAATAGTCATTTTATA
1 TAGCGGCGTTTTTAT-AAAAAACGCCACAAAAAAT-ATTTTACTTTAAAAAATAGCCATTTTATA
* * *
26622072 TAGTAAAACATTTTGCGGCGTTTTCATAAAAAACGCCGCAAAAGGTAAGCAA
64 TAGCAAAACATTTAGCGGCGTTTTTATAAAAAACGCCGCAAAAGGTAAGCAA
*
26622124 TAGCGGCGTTTTTATAAAAAACGCCACAAAAAA-ATTTTACTTTAAAAAATAGGCATTTTATATA
1 TAGCGGCGTTTTTATAAAAAACGCCACAAAAAATATTTTACTTTAAAAAATAGCCATTTTATATA
* * *
26622188 GCAAAACATTTAGCGGCATTTTTATACAAAACGCCACAAAA
66 GCAAAACATTTAGCGGCGTTTTTATAAAAAACGCCGCAAAA
26622229 AATAATTTTA
Statistics
Matches: 203, Mismatches: 17, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
114 65 0.32
115 15 0.07
116 17 0.08
117 106 0.52
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.30
Consensus pattern (115 bp):
TAGCGGCGTTTTTATAAAAAACGCCACAAAAAATATTTTACTTTAAAAAATAGCCATTTTATATA
GCAAAACATTTAGCGGCGTTTTTATAAAAAACGCCGCAAAAGGTAAGCAA
Found at i:26622254 original size:55 final size:55
Alignment explanation
Indices: 26622178--26622293 Score: 223
Period size: 55 Copynumber: 2.1 Consensus size: 55
26622168 AAAAATAGGC
*
26622178 ATTTTATATAGCAAAACATTTAGCGGCATTTTTATACAAAACGCCACAAAAAATA
1 ATTTTATATAGCAAAACATTTAGCGGCATTTTTATAAAAAACGCCACAAAAAATA
26622233 ATTTTATATAGCAAAACATTTAGCGGCATTTTTATAAAAAACGCCACAAAAAATA
1 ATTTTATATAGCAAAACATTTAGCGGCATTTTTATAAAAAACGCCACAAAAAATA
26622288 ATTTTA
1 ATTTTA
26622294 CTTTAAAAAA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 60 1.00
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.31
Consensus pattern (55 bp):
ATTTTATATAGCAAAACATTTAGCGGCATTTTTATAAAAAACGCCACAAAAAATA
Found at i:26622386 original size:129 final size:125
Alignment explanation
Indices: 26622122--26622400 Score: 337
Period size: 129 Copynumber: 2.2 Consensus size: 125
26622112 AAAGGTAAGC
* *** ***
26622122 AATAGCGGCGTTTTTATAAAAAACGCCACAAAAAAATTTTACTTTAAAAAATAGGCATTTTATAT
1 AATAGCGGCATTTTTATAAAAAACGCCACAAAAAAATTTTACTTTAAAAAATAAAAATGCCATAT
* * *
26622187 AGCAAAACATTTAGCGGCATTTTTATACAAAACGCCACAAAAAATAATTTTATATAGCAAA
66 AGAAAAACATTTAGCGACATTTTTATAAAAAACGCCACAAAAAATAATTTTATATA-CAAA
26622248 ACATTTAGCGGCATTTTTATAAAAAACGCCACAAAAAATAATTTTACTTTAAAAAATAAAAATAG
1 A-A--TAGCGGCATTTTTATAAAAAACGCCAC-AAAAA-AATTTTACTTTAAAAAATAAAAAT-G
* *
26622313 CCAGTTTAGAAAAATATTTAGCGACATTTTTATAAAAAAACGCCACAAAAAAATAATTTTATA-A
60 CCA-TATAGAAAAACATTTAGCGACATTTTTAT-AAAAAACGCCAC-AAAAAATAATTTTATATA
26622377 -AAA
122 CAAA
*
26622380 AATAGCGCCATTTTTATAAAA
1 AATAGCGGCATTTTTATAAAA
26622401 TCCCCTCCCC
Statistics
Matches: 131, Mismatches: 13, Indels: 15
0.82 0.08 0.09
Matches are distributed among these distances:
126 1 0.01
127 1 0.01
129 44 0.34
130 5 0.04
131 22 0.17
132 5 0.04
133 25 0.19
134 12 0.09
135 16 0.12
ACGTcount: A:0.48, C:0.13, G:0.09, T:0.29
Consensus pattern (125 bp):
AATAGCGGCATTTTTATAAAAAACGCCACAAAAAAATTTTACTTTAAAAAATAAAAATGCCATAT
AGAAAAACATTTAGCGACATTTTTATAAAAAACGCCACAAAAAATAATTTTATATACAAA
Found at i:26622435 original size:21 final size:21
Alignment explanation
Indices: 26622406--26622455 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
26622396 TAAAATCCCC
26622406 TCCCCCCT-AAATCCCCAACTT
1 TCCCCCCTAAAATCCCCAA-TT
* *
26622427 TCCCTCCTAAAATCCCTAATT
1 TCCCCCCTAAAATCCCCAATT
26622448 TCCCCCCT
1 TCCCCCCT
26622456 TGAAACCCCC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.22, C:0.50, G:0.00, T:0.28
Consensus pattern (21 bp):
TCCCCCCTAAAATCCCCAATT
Found at i:26623666 original size:24 final size:24
Alignment explanation
Indices: 26623624--26623683 Score: 86
Period size: 24 Copynumber: 2.5 Consensus size: 24
26623614 AGAGACTACT
*
26623624 GTTATCTA-TCCTAAGTTGTTTAA
1 GTTATCTATTTCTAAGTTGTTTAA
* *
26623647 TTTATCTATTTCTAATTTGTTTAA
1 GTTATCTATTTCTAAGTTGTTTAA
26623671 GTTATCTATTTCT
1 GTTATCTATTTCT
26623684 GCCTTCAACG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 7 0.22
24 25 0.78
ACGTcount: A:0.23, C:0.12, G:0.08, T:0.57
Consensus pattern (24 bp):
GTTATCTATTTCTAAGTTGTTTAA
Found at i:26626768 original size:43 final size:40
Alignment explanation
Indices: 26626719--26626897 Score: 169
Period size: 43 Copynumber: 4.2 Consensus size: 40
26626709 ATAAACGTCA
*
26626719 CTAAAGAATTGTACTTTTAGCGGCGTTTGTGATAAAAGCGCCG
1 CTAAAG-ATTGT-C-TTTAGCGGCGTTTGTGAGAAAAGCGCCG
*
26626762 CTAAAGATCATGTTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG
1 CTAAAGAT--TG-TCTTTAGCGGCGTTTGTGAGAAAAGCGCCG
* *
26626805 CTAAAGGTTTTGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCG
1 CTAAA-G-ATT-GTCTTTAGCGGCGTTTGTGAGAAAAGCGCCG
* * * *
26626848 CTAAAGGTCATGGTCTTTAGCGGCGTTTAGTTATAAAAACGCCG
1 CTAAA-G--ATTGTCTTTAGCGGCGTTT-GTGAGAAAAGCGCCG
26626892 CTAAAG
1 CTAAAG
26626898 TTAGCGACGC
Statistics
Matches: 118, Mismatches: 10, Indels: 16
0.82 0.07 0.11
Matches are distributed among these distances:
42 2 0.02
43 92 0.78
44 22 0.19
45 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (40 bp):
CTAAAGATTGTCTTTAGCGGCGTTTGTGAGAAAAGCGCCG
Found at i:26626966 original size:22 final size:22
Alignment explanation
Indices: 26626939--26626980 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
26626929 CCGCGCTTCT
*
26626939 AAAAGCGCCGCTAAAGGCCTAA
1 AAAAGCGCCGCTAAAAGCCTAA
26626961 AAAAGCGCCGCTAAAAGCCT
1 AAAAGCGCCGCTAAAAGCCT
26626981 GTTTTGTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.40, C:0.29, G:0.21, T:0.10
Consensus pattern (22 bp):
AAAAGCGCCGCTAAAAGCCTAA
Found at i:26628765 original size:21 final size:21
Alignment explanation
Indices: 26628741--26628780 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
26628731 TTTTGGCATA
26628741 TTTTGAGCT-TGTTTAATTGTG
1 TTTTGAG-TATGTTTAATTGTG
26628762 TTTTGAGTATGTTTAATTG
1 TTTTGAGTATGTTTAATTG
26628781 CTGGTCAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.17, C:0.03, G:0.23, T:0.57
Consensus pattern (21 bp):
TTTTGAGTATGTTTAATTGTG
Found at i:26630314 original size:15 final size:15
Alignment explanation
Indices: 26630294--26630330 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
26630284 CATTTTGCAC
26630294 TTAGGCCCCTCGAGT
1 TTAGGCCCCTCGAGT
26630309 TTAGGCCCCTCGAGT
1 TTAGGCCCCTCGAGT
26630324 TTAGGCC
1 TTAGGCC
26630331 ACTCTCGATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.14, C:0.32, G:0.27, T:0.27
Consensus pattern (15 bp):
TTAGGCCCCTCGAGT
Found at i:26635854 original size:19 final size:19
Alignment explanation
Indices: 26635830--26635867 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
26635820 CTTCCATTTC
26635830 ATGAAAACATATTTTTTTA
1 ATGAAAACATATTTTTTTA
26635849 ATGAAAACATATTTTTTTA
1 ATGAAAACATATTTTTTTA
26635868 GTTTACATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.47
Consensus pattern (19 bp):
ATGAAAACATATTTTTTTA
Found at i:26637490 original size:19 final size:20
Alignment explanation
Indices: 26637452--26637487 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 20
26637442 AATAAAATTT
26637452 TAAAATTAATATTAATAATA
1 TAAAATTAATATTAATAATA
26637472 TAAAA-TAAT-TTAATAA
1 TAAAATTAATATTAATAA
26637488 ATACCTTACG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.44
19 4 0.25
20 5 0.31
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (20 bp):
TAAAATTAATATTAATAATA
Done.