Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 86 of 170
Found at i:26639162 original size:22 final size:22
Alignment explanation
Indices: 26639134--26639190 Score: 80
Period size: 22 Copynumber: 2.6 Consensus size: 22
26639124 TCACTTACCG
26639134 ACACGCCCGTGTGCAA-CCTCTC
1 ACACGCCCGTGTGCAAGCC-CTC
*
26639156 ACACGCCGGTGTGCAAGCCCTC
1 ACACGCCCGTGTGCAAGCCCTC
*
26639178 ACACTCCCGTGTG
1 ACACGCCCGTGTG
26639191 GACAGGCACA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 29 0.94
23 2 0.06
ACGTcount: A:0.18, C:0.42, G:0.23, T:0.18
Consensus pattern (22 bp):
ACACGCCCGTGTGCAAGCCCTC
Found at i:26640413 original size:14 final size:14
Alignment explanation
Indices: 26640394--26640426 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
26640384 TTGCCATTTT
26640394 CCAATATTTAATTA
1 CCAATATTTAATTA
26640408 CCAATATTTAATTA
1 CCAATATTTAATTA
26640422 CCAAT
1 CCAAT
26640427 TGTAACACCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.42, C:0.18, G:0.00, T:0.39
Consensus pattern (14 bp):
CCAATATTTAATTA
Found at i:26641802 original size:14 final size:14
Alignment explanation
Indices: 26641783--26641816 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
26641773 ATTTAAAATC
*
26641783 TTTAAAATTATTTT
1 TTTAAAAATATTTT
26641797 TTTAAAAATATTTT
1 TTTAAAAATATTTT
*
26641811 ATTAAA
1 TTTAAA
26641817 TTTTTTAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TTTAAAAATATTTT
Found at i:26645468 original size:37 final size:37
Alignment explanation
Indices: 26645358--26645441 Score: 109
Period size: 37 Copynumber: 2.3 Consensus size: 37
26645348 AGTACAGTAG
* * *
26645358 TTCAGTATATTTAATAGATAATACTC-GATTGAGC-TTA
1 TTCAGTATA-TCAATAAATAACACTCAG-TTGAGCTTTA
26645395 TTCAGTATATCAATAAATAACACTCAGTTGAGCTTTA
1 TTCAGTATATCAATAAATAACACTCAGTTGAGCTTTA
26645432 TTCAGTATAT
1 TTCAGTATAT
26645442 TAGTAGATAT
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
36 19 0.45
37 23 0.55
ACGTcount: A:0.36, C:0.13, G:0.12, T:0.39
Consensus pattern (37 bp):
TTCAGTATATCAATAAATAACACTCAGTTGAGCTTTA
Found at i:26646940 original size:41 final size:38
Alignment explanation
Indices: 26646895--26646977 Score: 112
Period size: 41 Copynumber: 2.1 Consensus size: 38
26646885 AAATTGGCAA
*
26646895 GGGAGGAGAGCATTGAAAGAAGAAAATAGAAGAATAAATAG
1 GGGAGGAGAGAATTGAAA-AAGAAAAT-GAAGAATAAAT-G
* *
26646936 GGGAGGAGAGAATTGAAAAAGATAATGAGGAATAAATG
1 GGGAGGAGAGAATTGAAAAAGAAAATGAAGAATAAATG
26646974 GGGA
1 GGGA
26646978 TAATACATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
38 5 0.13
39 10 0.26
40 7 0.18
41 17 0.44
ACGTcount: A:0.51, C:0.01, G:0.35, T:0.13
Consensus pattern (38 bp):
GGGAGGAGAGAATTGAAAAAGAAAATGAAGAATAAATG
Found at i:26647064 original size:22 final size:22
Alignment explanation
Indices: 26647032--26647079 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
26647022 ATTAATATTT
26647032 TAATATATTAAATCA-TTAAATA
1 TAATATATTAAAT-ATTTAAATA
* *
26647054 TAATATTTTAAATATTTTAATA
1 TAATATATTAAATATTTAAATA
26647076 TAAT
1 TAAT
26647080 TCAATATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
TAATATATTAAATATTTAAATA
Found at i:26647104 original size:39 final size:39
Alignment explanation
Indices: 26647021--26647104 Score: 102
Period size: 39 Copynumber: 2.2 Consensus size: 39
26647011 AGTATTGAAT
*
26647021 TATT-AATATTTTAATATATTAAATCATTAAATATAATA
1 TATTAAATATTTTAATATATTAAATCATTAAAAATAATA
* *
26647059 TTTTAAATATTTTAATATAATTCAAT-A-TAAAAATAACTA
1 TATTAAATATTTTAATAT-ATTAAATCATTAAAAATAA-TA
26647098 TATTAAA
1 TATTAAA
26647105 AATATTATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
38 11 0.28
39 22 0.56
40 6 0.15
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (39 bp):
TATTAAATATTTTAATATATTAAATCATTAAAAATAATA
Found at i:26651839 original size:126 final size:126
Alignment explanation
Indices: 26651315--26651837 Score: 757
Period size: 126 Copynumber: 4.2 Consensus size: 126
26651305 TAAGGTCAAG
*
26651315 CAAGAACTACTGTAGAAAAAGAGCGTCCACA-TGAGAGTTTTTTTTAGTACTTTTGCTGACAGTG
1 CAAGAACTACTGTAGAAAAAGAGCGTCCA-AGTGAGAGCTTTTTTTAGTACTTTTGCTGACAGTG
* *
26651379 CATCCTGCTTAAAGCATTTTTGACGCTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
65 CATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* ** * * *
26651441 CAGGAACTACT-TAGAAAAAGAGCGTTTAAGTGAGAGCTTTTTTCAATACTTTTGCTGACAATGC
1 CAAGAACTACTGTAGAAAAAGAGCGTCCAAGTGAGAGCTTTTTTTAGTACTTTTGCTGACAGTGC
* *
26651505 ATCCTACTTGAAGCATTTTTGACACTATTTTTTCAGAACTGTCTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * * * *
26651566 CAAGAACTATTGTAGAAAAAGAGCGTCTAAGTGGGAGCTTTTTTGAGTTCTTTTGCTGACAGTGC
1 CAAGAACTACTGTAGAAAAAGAGCGTCCAAGTGAGAGCTTTTTTTAGTACTTTTGCTGACAGTGC
* * * *
26651631 ATCCTGCTTGAAGCATTTTTGTCACTATTTTTTTAAAACCATCTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * * *
26651692 CAAGAACTACTGTAGAAAAAAAGTGTCCAAGTG-GAAGATTTTTTTAGTACTTTTGCTTACAGTG
1 CAAGAACTACTGTAGAAAAAGAGCGTCCAAGTGAG-AGCTTTTTTTAGTACTTTTGCTGACAGTG
* *
26651756 CATCCTGCTTGAAGCGTTTTTGTCACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
65 CATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
26651818 C-AGAAACTACTGTAGAAAAA
1 CAAG-AACTACTGTAGAAAAA
26651838 AAACAAAATC
Statistics
Matches: 356, Mismatches: 37, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
124 1 0.00
125 114 0.32
126 241 0.68
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (126 bp):
CAAGAACTACTGTAGAAAAAGAGCGTCCAAGTGAGAGCTTTTTTTAGTACTTTTGCTGACAGTGC
ATCCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
Found at i:26651987 original size:33 final size:36
Alignment explanation
Indices: 26651920--26652023 Score: 135
Period size: 34 Copynumber: 2.9 Consensus size: 36
26651910 CTAAACACAA
*
26651920 AATTATTTTTAAAAATCTCTAAACCCTAATTTAATT
1 AATTTTTTTTAAAAATCTCTAAACCCTAATTTAATT
*
26651956 -ATTTTTTTTAAAAATCT-TAAACTCTAA-TTAATT
1 AATTTTTTTTAAAAATCTCTAAACCCTAATTTAATT
26651989 AATTTTTTTTAAAAAAAATC-CTAAACCCTAATTTA
1 AATTTTTTTT---AAAAATCTCTAAACCCTAATTTA
26652024 TTTTTTAAAA
Statistics
Matches: 59, Mismatches: 3, Indels: 10
0.82 0.04 0.14
Matches are distributed among these distances:
33 6 0.10
34 18 0.31
35 16 0.27
37 16 0.27
38 3 0.05
ACGTcount: A:0.42, C:0.12, G:0.00, T:0.45
Consensus pattern (36 bp):
AATTTTTTTTAAAAATCTCTAAACCCTAATTTAATT
Found at i:26652006 original size:37 final size:33
Alignment explanation
Indices: 26651925--26652029 Score: 122
Period size: 37 Copynumber: 3.0 Consensus size: 33
26651915 CACAAAATTA
26651925 TTTTTAAAAATCTCTAAACCCTAATTTAATTATTT
1 TTTTTAAAAATCT-TAAACCCTAA-TTAATTATTT
*
26651960 TTTTTAAAAATCTTAAACTCTAATTAATTAATTT
1 TTTTTAAAAATCTTAAACCCTAATTAATT-ATTT
* *
26651994 TTTTTAAAAAAAATCCTAAACCCTAATTTATT-TTT
1 TTTTT---AAAAATCTTAAACCCTAATTAATTATTT
26652029 T
1 T
26652030 AAAATCCCTA
Statistics
Matches: 62, Mismatches: 4, Indels: 8
0.84 0.05 0.11
Matches are distributed among these distances:
33 6 0.10
34 18 0.29
35 17 0.27
37 21 0.34
ACGTcount: A:0.39, C:0.12, G:0.00, T:0.49
Consensus pattern (33 bp):
TTTTTAAAAATCTTAAACCCTAATTAATTATTT
Found at i:26652055 original size:27 final size:27
Alignment explanation
Indices: 26652003--26652062 Score: 93
Period size: 28 Copynumber: 2.2 Consensus size: 27
26651993 TTTTTTAAAA
26652003 AAAATCCTAAACCCTAATTTATTTTTT
1 AAAATCCTAAACCCTAATTTATTTTTT
* *
26652030 AAAATCCCTACACCTTAATTTATTTTTT
1 AAAAT-CCTAAACCCTAATTTATTTTTT
26652058 AAAAT
1 AAAAT
26652063 ATCTAACCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 5 0.17
28 25 0.83
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.43
Consensus pattern (27 bp):
AAAATCCTAAACCCTAATTTATTTTTT
Found at i:26652079 original size:27 final size:27
Alignment explanation
Indices: 26652003--26652079 Score: 84
Period size: 28 Copynumber: 2.8 Consensus size: 27
26651993 TTTTTTAAAA
*
26652003 AAAAT-CCTAAACCCTAATTTATTTTTT
1 AAAATACCT-AACCATAATTTATTTTTT
* *
26652030 AAAATCCCTACACCTTAATTTATTTTTT
1 AAAATACCTA-ACCATAATTTATTTTTT
* *
26652058 AAAATATCTAACCATAAATTAT
1 AAAATACCTAACCATAATTTAT
26652080 AAACTCTAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 4
0.83 0.10 0.08
Matches are distributed among these distances:
27 16 0.37
28 27 0.63
ACGTcount: A:0.40, C:0.18, G:0.00, T:0.42
Consensus pattern (27 bp):
AAAATACCTAACCATAATTTATTTTTT
Found at i:26668905 original size:51 final size:51
Alignment explanation
Indices: 26668831--26669015 Score: 225
Period size: 51 Copynumber: 3.6 Consensus size: 51
26668821 CGATGAACAT
* * *
26668831 GTGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATA-ATGGTCAC
1 GTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCGATAAA-ACTTGGTCAC
* * *
26668882 ATGTGTAGTACTAAGTGAAGGCTACTATGTGTACCGA-AAAGATTTGGTCAC
1 GTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCGATAAA-ACTTGGTCAC
* *
26668933 GTGTGTAGTACTATA-TGAAGGCTACTACGTGGACCG-TAAAACTTGATCAC
1 GTGTGTAGTACTA-AGTGAAGGCTACTACGTGTACCGATAAAACTTGGTCAC
* *
26668983 GTGTGTAGTACTATGTGAAGGCTATTACGTGTA
1 GTGTGTAGTACTAAGTGAAGGCTACTACGTGTA
26669016 TCGAATGATA
Statistics
Matches: 116, Mismatches: 14, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
50 41 0.35
51 74 0.64
52 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.31
Consensus pattern (51 bp):
GTGTGTAGTACTAAGTGAAGGCTACTACGTGTACCGATAAAACTTGGTCAC
Found at i:26668912 original size:26 final size:26
Alignment explanation
Indices: 26668832--26668914 Score: 68
Period size: 26 Copynumber: 3.2 Consensus size: 26
26668822 GATGAACATG
*
26668832 TGTGTAGTACTATGTGAAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
* *
26668858 CGTGTA-T-CGATAAAT-AATGG-TCAC-A
1 TGTGTAGTAC--TAAGTGAA-GGCT-ACTA
26668883 TGTGTAGTACTAAGTGAAGGCTACTA
1 TGTGTAGTACTAAGTGAAGGCTACTA
26668909 TGTGTA
1 TGTGTA
26668915 CCGAAAAGAT
Statistics
Matches: 43, Mismatches: 5, Indels: 18
0.65 0.08 0.27
Matches are distributed among these distances:
24 1 0.02
25 18 0.42
26 23 0.53
27 1 0.02
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (26 bp):
TGTGTAGTACTAAGTGAAGGCTACTA
Found at i:26669045 original size:101 final size:102
Alignment explanation
Indices: 26668835--26669052 Score: 235
Period size: 101 Copynumber: 2.1 Consensus size: 102
26668825 GAACATGTGT
* * *
26668835 GTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTACTAAGTGA
1 GTAGTACTATGTGAAGGCTACTACGTGGACCGATAAATAATGATCACATGTGTAGTACTAAGTGA
* * ** * * *
26668900 AGGCTACTATGTGTACCGAAAAGATTTGGTCACGTGT
66 AGGCTACTACGTGTACCGAAAAGATATAATAACATGA
* * * *
26668937 GTAGTACTATATGAAGGCTACTACGTGGACCG-TAAA-ACTTGATCACGTGTGTAGTACTATGTG
1 GTAGTACTATGTGAAGGCTACTACGTGGACCGATAAATA-ATGATCACATGTGTAGTACTAAGTG
* * *
26669000 AAGGCTATTACGTGTATCG-AATGATAATAATAACATGA
65 AAGGCTACTACGTGTACCGAAAAGAT-ATAATAACATGA
*
26669038 GTGGTACTATGTGAA
1 GTAGTACTATGTGAA
26669053 AACCCCAAAA
Statistics
Matches: 95, Mismatches: 19, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
100 6 0.06
101 60 0.63
102 29 0.31
ACGTcount: A:0.32, C:0.13, G:0.25, T:0.30
Consensus pattern (102 bp):
GTAGTACTATGTGAAGGCTACTACGTGGACCGATAAATAATGATCACATGTGTAGTACTAAGTGA
AGGCTACTACGTGTACCGAAAAGATATAATAACATGA
Found at i:26672734 original size:8 final size:8
Alignment explanation
Indices: 26672721--26672745 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
26672711 TTTTAAATAA
26672721 TATTTTAT
1 TATTTTAT
26672729 TATTTTAT
1 TATTTTAT
26672737 TATTTTAT
1 TATTTTAT
26672745 T
1 T
26672746 GTTTAGTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (8 bp):
TATTTTAT
Found at i:26676589 original size:12 final size:12
Alignment explanation
Indices: 26676543--26676592 Score: 50
Period size: 12 Copynumber: 4.1 Consensus size: 12
26676533 ACTTAGTCAC
26676543 TTTAATATTAAA
1 TTTAATATTAAA
26676555 -TTAATATAATAAA
1 TTTAATAT--TAAA
*
26676568 TATT-AGATTAAA
1 T-TTAATATTAAA
26676580 TTTAATATTAAA
1 TTTAATATTAAA
26676592 T
1 T
26676593 CTTATTAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
11 9 0.29
12 13 0.42
13 4 0.13
14 3 0.10
15 2 0.06
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:26682617 original size:42 final size:42
Alignment explanation
Indices: 26682558--26682666 Score: 139
Period size: 42 Copynumber: 2.6 Consensus size: 42
26682548 TTTAATATTG
** * *
26682558 AAATATGATTCACATGTTAATCAT-ACCGACTATGTTGATTAT
1 AAATATGATTTGCATGTTAAGCATGA-CGACTATGTGGATTAT
*
26682600 AAATATGATTTGCATGTTAAGCATGACGAGTATGTGGATTAT
1 AAATATGATTTGCATGTTAAGCATGACGACTATGTGGATTAT
* *
26682642 AAATTTGAATTGCATGTTAAGCATG
1 AAATATGATTTGCATGTTAAGCATG
26682667 CCCATTGAAA
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 58 0.98
43 1 0.02
ACGTcount: A:0.35, C:0.10, G:0.18, T:0.37
Consensus pattern (42 bp):
AAATATGATTTGCATGTTAAGCATGACGACTATGTGGATTAT
Found at i:26682827 original size:48 final size:48
Alignment explanation
Indices: 26682756--26682872 Score: 171
Period size: 48 Copynumber: 2.4 Consensus size: 48
26682746 TTCACTGTAA
26682756 TATTGAGTGGCTTGACCACAACATTATTGAGTGGCTTGACCACAATGC
1 TATTGAGTGGCTTGACCACAACATTATTGAGTGGCTTGACCACAATGC
* * * * *
26682804 TATTGAGTGGCTTGGCCATAACATTATTGATTGGCTTGGCCACAATGT
1 TATTGAGTGGCTTGACCACAACATTATTGAGTGGCTTGACCACAATGC
* *
26682852 TATTGATTGGCTTGTCCACAA
1 TATTGAGTGGCTTGACCACAA
26682873 TGTGTAGTTT
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
48 61 1.00
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (48 bp):
TATTGAGTGGCTTGACCACAACATTATTGAGTGGCTTGACCACAATGC
Found at i:26682873 original size:24 final size:24
Alignment explanation
Indices: 26682756--26682875 Score: 141
Period size: 24 Copynumber: 5.0 Consensus size: 24
26682746 TTCACTGTAA
**
26682756 TATTGAGTGGCTTGACCACAACAT
1 TATTGAGTGGCTTGACCACAATGT
*
26682780 TATTGAGTGGCTTGACCACAATGC
1 TATTGAGTGGCTTGACCACAATGT
* * **
26682804 TATTGAGTGGCTTGGCCATAACAT
1 TATTGAGTGGCTTGACCACAATGT
* *
26682828 TATTGATTGGCTTGGCCACAATGT
1 TATTGAGTGGCTTGACCACAATGT
* *
26682852 TATTGATTGGCTTGTCCACAATGT
1 TATTGAGTGGCTTGACCACAATGT
26682876 GTAGTTTTAC
Statistics
Matches: 83, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 83 1.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.34
Consensus pattern (24 bp):
TATTGAGTGGCTTGACCACAATGT
Found at i:26691691 original size:25 final size:25
Alignment explanation
Indices: 26691663--26691710 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
26691653 ACAACCTATC
* *
26691663 TATAGTAGTCTCAGTATATACTACT
1 TATAGCAGTCTCAGGATATACTACT
* *
26691688 TATAGCAGTTTCGGGATATACTA
1 TATAGCAGTCTCAGGATATACTA
26691711 TCAAAAATAG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.31, C:0.15, G:0.17, T:0.38
Consensus pattern (25 bp):
TATAGCAGTCTCAGGATATACTACT
Found at i:26693959 original size:89 final size:90
Alignment explanation
Indices: 26693850--26694037 Score: 333
Period size: 89 Copynumber: 2.1 Consensus size: 90
26693840 CACTCGATCC
*
26693850 AAACACCCCAAACCATCCACAACCTCCCACACATATCAAACACTCAGTATTTTACCACATTTCAA
1 AAACATCCCAAACCATCCACAACCTCCCACACATATCAAACACTCAGTATTTTACCACATTTCAA
26693915 ACTCCATCATGGTACAAGAACAAAA
66 ACTCCATCATGGTACAAGAACAAAA
* *
26693940 AAA-ATCCCAAACCGTCCACAACCTCCCACACATCTCAAACACTCAGTATTTTACCACATTTCAA
1 AAACATCCCAAACCATCCACAACCTCCCACACATATCAAACACTCAGTATTTTACCACATTTCAA
*
26694004 ACTCCTTCATGGTACAAGAACAAAA
66 ACTCCATCATGGTACAAGAACAAAA
26694029 AAACATCCC
1 AAACATCCC
26694038 CCTTGCACGT
Statistics
Matches: 93, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
89 85 0.91
90 8 0.09
ACGTcount: A:0.41, C:0.35, G:0.05, T:0.20
Consensus pattern (90 bp):
AAACATCCCAAACCATCCACAACCTCCCACACATATCAAACACTCAGTATTTTACCACATTTCAA
ACTCCATCATGGTACAAGAACAAAA
Found at i:26696989 original size:19 final size:20
Alignment explanation
Indices: 26696967--26697013 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
26696957 TTTTAGGCTG
26696967 CACAGGGT-CAGTGTTGCAA
1 CACAGGGTACAGTGTTGCAA
*
26696986 CACAGGCCTACAGTGTTGCAA
1 CACAGG-GTACAGTGTTGCAA
*
26697007 CATAGGG
1 CACAGGG
26697014 GGTGTTGCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
19 6 0.26
20 1 0.04
21 16 0.70
ACGTcount: A:0.28, C:0.23, G:0.30, T:0.19
Consensus pattern (20 bp):
CACAGGGTACAGTGTTGCAA
Found at i:26697477 original size:24 final size:24
Alignment explanation
Indices: 26697445--26697529 Score: 100
Period size: 24 Copynumber: 3.6 Consensus size: 24
26697435 TTTACTGAAA
*
26697445 TATTGAGTGGCTAGACCACAACGT
1 TATTGAGTGGCTTGACCACAACGT
* * *
26697469 TATTGAGTGGCTTGACCATAATGC
1 TATTGAGTGGCTTGACCACAACGT
* **
26697493 TATTGAGTGGTTTG-GGACAACGT
1 TATTGAGTGGCTTGACCACAACGT
26697516 TATTGAGTGGCTTG
1 TATTGAGTGGCTTG
26697530 TCCATAATGT
Statistics
Matches: 50, Mismatches: 11, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
23 17 0.34
24 33 0.66
ACGTcount: A:0.24, C:0.14, G:0.29, T:0.33
Consensus pattern (24 bp):
TATTGAGTGGCTTGACCACAACGT
Found at i:26699722 original size:10 final size:10
Alignment explanation
Indices: 26699707--26699754 Score: 51
Period size: 10 Copynumber: 4.6 Consensus size: 10
26699697 TAACATGTTG
26699707 AATTTTAATT
1 AATTTTAATT
*
26699717 AATTTTATAGTA
1 AATTTTA-A-TT
*
26699729 AATTTTGATT
1 AATTTTAATT
*
26699739 AATTTTGATT
1 AATTTTAATT
26699749 AATTTT
1 AATTTT
26699755 CGACATATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 24 0.73
11 2 0.06
12 7 0.21
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (10 bp):
AATTTTAATT
Found at i:26704770 original size:41 final size:43
Alignment explanation
Indices: 26704660--26704801 Score: 127
Period size: 41 Copynumber: 3.4 Consensus size: 43
26704650 AGCTCGTACA
* * * * *
26704660 ATGCCAACGTCCCAGACGT-GGTCTTACATGTAATCACATATCG
1 ATGCCAATGTCCCAGACATAGGTCTTACACGTAAACAAATA-CG
* *
26704703 ATGCCACTGTCCTAG--ATAGGGTCTTACACG-AAACAAATACG
1 ATGCCAATGTCCCAGACATA-GGTCTTACACGTAAACAAATACG
* *
26704744 ATGCCAATGTCCCAGACATAGG-CTTACACGTAACACAAGT-TG
1 ATGCCAATGTCCCAGACATAGGTCTTACACGTAA-ACAAATACG
26704786 ATGCCAA-GTCCCAGAC
1 ATGCCAATGTCCCAGAC
26704802 GTGGTCATAG
Statistics
Matches: 82, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
41 33 0.40
42 19 0.23
43 30 0.37
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.22
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATAGGTCTTACACGTAAACAAATACG
Found at i:26707642 original size:41 final size:41
Alignment explanation
Indices: 26707520--26707706 Score: 236
Period size: 41 Copynumber: 4.6 Consensus size: 41
26707510 TTATTTCCTA
* * *
26707520 AATTTCACATACGTGTCCCTATTTGTACTTTGGTACCCCTG
1 AATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTG
* * *
26707561 AATTGCACATACGTG-CCCTGTTTTTACTTCGATACCCCTG
1 AATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTG
* *
26707601 AACTGCACATACGTGCCCCTGTTTGTACTTTGGTACACCTG
1 AATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTG
* *
26707642 AATTGCACATATGTGCCCCTGTTTGTA-TATCT-GTACCCCTA
1 AATTGCACATACGTGCCCCTGTTTGTACT-T-TGGTACCCCTG
*
26707683 AATTGCACATACGTGCCCATGTTT
1 AATTGCACATACGTGCCCCTGTTT
26707707 ACATTTCGGT
Statistics
Matches: 127, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
40 36 0.28
41 90 0.71
42 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (41 bp):
AATTGCACATACGTGCCCCTGTTTGTACTTTGGTACCCCTG
Found at i:26707728 original size:82 final size:81
Alignment explanation
Indices: 26707516--26707706 Score: 226
Period size: 81 Copynumber: 2.3 Consensus size: 81
26707506 TTAATTATTT
* * * * *
26707516 CCTAAATTTCACATACGTGTCCC-TATTTGTACTTTGGTACCCCTGAATTGCACATACGTGCCCT
1 CCTAAACTGCACATACGTG-CCCATGTTTGTACTTTGGTACACCTAAATTGCACATACGTGCCCT
*
26707580 GTTTTTACTTCGATACC
65 GTTTGTACTTCGATACC
* * * *
26707597 CCTGAACTGCACATACGTGCCCCTGTTTGTACTTTGGTACACCTGAATTGCACATATGTGCCCCT
1 CCTAAACTGCACATACGTGCCCATGTTTGTACTTTGGTACACCTAAATTGCACATACGTG-CCCT
26707662 GTTTGTA-TATCTG-TACC
65 GTTTGTACT-TC-GATACC
*
26707679 CCTAAATTGCACATACGTGCCCATGTTT
1 CCTAAACTGCACATACGTGCCCATGTTT
26707707 ACATTTCGGT
Statistics
Matches: 96, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
80 3 0.03
81 51 0.53
82 41 0.43
83 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (81 bp):
CCTAAACTGCACATACGTGCCCATGTTTGTACTTTGGTACACCTAAATTGCACATACGTGCCCTG
TTTGTACTTCGATACC
Found at i:26714605 original size:26 final size:27
Alignment explanation
Indices: 26714536--26714664 Score: 179
Period size: 27 Copynumber: 4.8 Consensus size: 27
26714526 CTGCACCAAG
*
26714536 ATACCCCCATAGGGTAAAATGACCGAA
1 ATACCCCCATAGGGTAAAATGATCGAA
* *
26714563 ACACCCCCATAGGGTAGAATGATCGAA
1 ATACCCCCATAGGGTAAAATGATCGAA
* * *
26714590 ATA-CCCCATAGAGTAGAATGATTGAA
1 ATACCCCCATAGGGTAAAATGATCGAA
*
26714616 ATACCCCTATAGGGTAAAATGATCGAA
1 ATACCCCCATAGGGTAAAATGATCGAA
*
26714643 ATACCCCCATAGGATAAAATGA
1 ATACCCCCATAGGGTAAAATGA
26714665 CTGTTATACC
Statistics
Matches: 89, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
26 24 0.27
27 65 0.73
ACGTcount: A:0.41, C:0.22, G:0.19, T:0.19
Consensus pattern (27 bp):
ATACCCCCATAGGGTAAAATGATCGAA
Found at i:26714622 original size:53 final size:54
Alignment explanation
Indices: 26714536--26714665 Score: 174
Period size: 53 Copynumber: 2.4 Consensus size: 54
26714526 CTGCACCAAG
* *
26714536 ATACCCCCATAGGGTAAAATGACCGAAACACCCCCATAGGGTAGAATGATCGAA
1 ATACCCCCATAGAGTAAAATGACCGAAACACCCCCATAGGGTAAAATGATCGAA
* ** * *
26714590 ATA-CCCCATAGAGTAGAATGATTGAAATACCCCTATAGGGTAAAATGATCGAA
1 ATACCCCCATAGAGTAAAATGACCGAAACACCCCCATAGGGTAAAATGATCGAA
26714643 ATACCCCCATAG-GATAAAATGAC
1 ATACCCCCATAGAG-TAAAATGAC
26714666 TGTTATACCC
Statistics
Matches: 65, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
53 47 0.72
54 18 0.28
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.18
Consensus pattern (54 bp):
ATACCCCCATAGAGTAAAATGACCGAAACACCCCCATAGGGTAAAATGATCGAA
Found at i:26721872 original size:91 final size:90
Alignment explanation
Indices: 26721740--26721906 Score: 255
Period size: 91 Copynumber: 1.8 Consensus size: 90
26721730 CCAACCTTGT
* * *
26721740 TCAAAAGAAAAGTTATATCGACATCTAGACAAGTAAGGAGGGAGAGCAGTAGTGCAATAAATCGA
1 TCAAAAGAAAAGTTATATCAACATCTAGACAAG-AAGGAGGGAGAGAAGTAGTGCAAAAAATCGA
26721805 TGGAATGATAAACGTCCCAACCTCAA
65 TGGAATGATAAACGTCCCAACCTCAA
* *
26721831 TCAAAAGAAAAGTTATATCAACATCTAAAGATAA-AAGGAGGGAGATAAGTAGTGCAAAAAATCG
1 TCAAAAGAAAAGTTATATCAACATCT--AGACAAGAAGGAGGGAGAGAAGTAGTGCAAAAAATCG
26721895 ATGGAATGATAA
64 ATGGAATGATAA
26721907 GATGGATGCA
Statistics
Matches: 69, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
91 64 0.93
93 5 0.07
ACGTcount: A:0.47, C:0.13, G:0.22, T:0.19
Consensus pattern (90 bp):
TCAAAAGAAAAGTTATATCAACATCTAGACAAGAAGGAGGGAGAGAAGTAGTGCAAAAAATCGAT
GGAATGATAAACGTCCCAACCTCAA
Found at i:26730215 original size:29 final size:29
Alignment explanation
Indices: 26730173--26730359 Score: 180
Period size: 29 Copynumber: 6.4 Consensus size: 29
26730163 GATCATTGAA
*
26730173 TATGAAAAGGGATAGCTTTGGCTATCGAT
1 TATGAAAAGGGATAGCTTCGGCTATCGAT
*
26730202 TATGAAAAGGGATAGCTTCGGCTATCGAA
1 TATGAAAAGGGATAGCTTCGGCTATCGAT
* *
26730231 TATGAAAAGGGATAGCTTTGGCTATCGGT
1 TATGAAAAGGGATAGCTTCGGCTATCGAT
* * * * * * * *
26730260 TACGAAAAGGGAT-GGTGACGACCAACAAC
1 TATGAAAAGGGATAGCT-TCGGCTATCGAT
* * * *
26730289 TATGAAAAGGGAT-GGTGACGACTATCGAA
1 TATGAAAAGGGATAGCT-TCGGCTATCGAT
*
26730318 TATGAAAAGGGATAGCTTTGGCTATCGAT
1 TATGAAAAGGGATAGCTTCGGCTATCGAT
*
26730347 TATGGAAAGGGAT
1 TATGAAAAGGGAT
26730360 GGGGACGACC
Statistics
Matches: 130, Mismatches: 26, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
28 2 0.02
29 126 0.97
30 2 0.02
ACGTcount: A:0.34, C:0.12, G:0.29, T:0.25
Consensus pattern (29 bp):
TATGAAAAGGGATAGCTTCGGCTATCGAT
Found at i:26730322 original size:87 final size:87
Alignment explanation
Indices: 26730223--26730393 Score: 279
Period size: 87 Copynumber: 2.0 Consensus size: 87
26730213 ATAGCTTCGG
* *
26730223 CTATCGAATATGAAAAGGGATAGCTTTGGCTATCGGTTACGAAAAGGGATGGTGACGACCAACAA
1 CTATCGAATATGAAAAGGGATAGCTTTGGCTATCGATTACGAAAAGGGATGGGGACGACCAACAA
26730288 CTATGAAAAGGGATGGTGACGA
66 CTATGAAAAGGGATGGTGACGA
* * * *
26730310 CTATCGAATATGAAAAGGGATAGCTTTGGCTATCGATTATGGAAAGGGATGGGGACGACCATCAT
1 CTATCGAATATGAAAAGGGATAGCTTTGGCTATCGATTACGAAAAGGGATGGGGACGACCAACAA
*
26730375 CTATGAAAGGGGATGGTGA
66 CTATGAAAAGGGATGGTGA
26730394 TGACCATCAA
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 77 1.00
ACGTcount: A:0.34, C:0.13, G:0.31, T:0.22
Consensus pattern (87 bp):
CTATCGAATATGAAAAGGGATAGCTTTGGCTATCGATTACGAAAAGGGATGGGGACGACCAACAA
CTATGAAAAGGGATGGTGACGA
Found at i:26730414 original size:87 final size:87
Alignment explanation
Indices: 26730225--26730417 Score: 273
Period size: 87 Copynumber: 2.2 Consensus size: 87
26730215 AGCTTCGGCT
* *
26730225 ATCGAATATGAAAAGGGATAGCTTTGGCTATCGGTTACGAAAAGGGATGGTGACGACCAACAACT
1 ATCGAATATGAAAAGGGATAGCTTTGGCTATCGATTACGAAAAGGGATGGGGACGACCAACAACT
*
26730290 ATGAAAAGGGATGGTGACGACT
66 ATGAAAAGGGATGGTGACGACC
* * * *
26730312 ATCGAATATGAAAAGGGATAGCTTTGGCTATCGATTATGGAAAGGGATGGGGACGACCATCATCT
1 ATCGAATATGAAAAGGGATAGCTTTGGCTATCGATTACGAAAAGGGATGGGGACGACCAACAACT
* *
26730377 ATGAAAGGGGATGGTGATGACC
66 ATGAAAAGGGATGGTGACGACC
26730399 ATC-AATTAATG-AAAGGGAT
1 ATCGAA-T-ATGAAAAGGGAT
26730418 GGTTTCAACC
Statistics
Matches: 95, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
86 2 0.02
87 90 0.95
88 3 0.03
ACGTcount: A:0.35, C:0.12, G:0.30, T:0.22
Consensus pattern (87 bp):
ATCGAATATGAAAAGGGATAGCTTTGGCTATCGATTACGAAAAGGGATGGGGACGACCAACAACT
ATGAAAAGGGATGGTGACGACC
Found at i:26730420 original size:29 final size:28
Alignment explanation
Indices: 26730265--26730460 Score: 121
Period size: 29 Copynumber: 6.8 Consensus size: 28
26730255 TCGGTTACGA
* *
26730265 AAAGGGATGGTGACGACCAACAACTATG
1 AAAGGGATGGTGACGACCATCAATTATG
*
26730293 AAAAGGGATGGTGACGACTATCGAA-TATG
1 -AAAGGGATGGTGACGACCATC-AATTATG
* ** * * *
26730322 AAAAGGGATAGCT-TTGGCTATCGATTATGG
1 -AAAGGGAT-GGTGACGACCATCAATTAT-G
*
26730352 AAAGGGATGGGGACGACCATC-ATCTATG
1 AAAGGGATGGTGACGACCATCAAT-TATG
*
26730380 AAAGGGGATGGTGATGACCATCAATTAATG
1 AAA-GGGATGGTGACGACCATCAATT-ATG
** *
26730410 AAAGGGATGGTTTCAACCATCGAA-TATG
1 AAAGGGATGGTGACGACCATC-AATTATG
* * *
26730438 AAAAGGGACGGTTACAACCATCA
1 -AAAGGGATGGTGACGACCATCA
26730461 TTTAGCATAC
Statistics
Matches: 135, Mismatches: 21, Indels: 23
0.75 0.12 0.13
Matches are distributed among these distances:
28 12 0.09
29 108 0.80
30 15 0.11
ACGTcount: A:0.36, C:0.14, G:0.29, T:0.21
Consensus pattern (28 bp):
AAAGGGATGGTGACGACCATCAATTATG
Found at i:26730432 original size:87 final size:87
Alignment explanation
Indices: 26730225--26730445 Score: 232
Period size: 87 Copynumber: 2.5 Consensus size: 87
26730215 AGCTTCGGCT
** * ** * *
26730225 ATCGAATATGAAAAGGGATAGCTTTGGCTATCGGTTACGAAAAGGGATGGTGACGACCAACAACT
1 ATCGAATATGAAAAGGGATAGCTTTAACCATCGAATATGAAAAGGGATGGGGACGACCAACAACT
*
26730290 ATGAAAAGGGATGGTGACGACT
66 ATGAAAAGGGATGGTGACGACC
** * * * * *
26730312 ATCGAATATGAAAAGGGATAGCTTTGGCTATCGATTATGGAAAGGGATGGGGACGACCATCATCT
1 ATCGAATATGAAAAGGGATAGCTTTAACCATCGAATATGAAAAGGGATGGGGACGACCAACAACT
* *
26730377 ATGAAAGGGGATGGTGATGACC
66 ATGAAAAGGGATGGTGACGACC
*
26730399 ATC-AATTAATG-AAAGGGAT-GGTTTCAACCATCGAATATGAAAAGGGA
1 ATCGAA-T-ATGAAAAGGGATAGCTTT-AACCATCGAATATGAAAAGGGA
26730446 CGGTTACAAC
Statistics
Matches: 116, Mismatches: 15, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
86 6 0.05
87 107 0.92
88 3 0.03
ACGTcount: A:0.36, C:0.13, G:0.29, T:0.22
Consensus pattern (87 bp):
ATCGAATATGAAAAGGGATAGCTTTAACCATCGAATATGAAAAGGGATGGGGACGACCAACAACT
ATGAAAAGGGATGGTGACGACC
Found at i:26733550 original size:21 final size:21
Alignment explanation
Indices: 26733488--26733556 Score: 54
Period size: 21 Copynumber: 3.4 Consensus size: 21
26733478 AAAATAAAAA
*
26733488 AAAAATAGTGATAACAATATT
1 AAAAATAATGATAACAATATT
* * * *
26733509 AAACAT-A--ATAATAGTAGT
1 AAAAATAATGATAACAATATT
*
26733527 AAAAATAATGATAACATTATT
1 AAAAATAATGATAACAATATT
*
26733548 AAAATTAAT
1 AAAAATAAT
26733557 TAATAGCAAC
Statistics
Matches: 35, Mismatches: 10, Indels: 6
0.69 0.20 0.12
Matches are distributed among these distances:
18 13 0.37
19 1 0.03
21 21 0.60
ACGTcount: A:0.58, C:0.04, G:0.07, T:0.30
Consensus pattern (21 bp):
AAAAATAATGATAACAATATT
Found at i:26737334 original size:20 final size:20
Alignment explanation
Indices: 26737309--26737347 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
26737299 TTGCTTCATC
26737309 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
26737329 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
26737348 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:26737614 original size:50 final size:50
Alignment explanation
Indices: 26737548--26737738 Score: 184
Period size: 50 Copynumber: 3.7 Consensus size: 50
26737538 TAATACTAAC
* * **
26737548 ATGCCAAAGCCGTGTCCCAGACATGGTCTTACATGGGAGTTCTCATATCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACATCTCATATCG
* * ** *
26737598 ATGCCCATGCCATGTCCCAGACATTGTCTTACGGGGGACATCTCATCTCG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACATCTCATATCG
* * * * *
26737648 GTGCCAACGCCATGTCCTAGACATGGTCTTACGTGGGACCTCTCATAACCTCAG
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACATCTCAT-A--TC-G
* *
26737702 TAATTCTAATGCCATGTCCCAGACATGGTCTTACATG
1 --ATGCCAATGCCATGTCCCAGACATGGTCTTACATG
26737739 AGATCTCATC
Statistics
Matches: 112, Mismatches: 23, Indels: 6
0.79 0.16 0.04
Matches are distributed among these distances:
50 80 0.71
53 2 0.02
54 1 0.01
56 29 0.26
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACATCTCATATCG
Found at i:26745252 original size:50 final size:50
Alignment explanation
Indices: 26745181--26745325 Score: 179
Period size: 49 Copynumber: 2.9 Consensus size: 50
26745171 GATACTAACA
* * **
26745181 TGCCAAAGTCATGTCCTAGACATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
26745231 TG-CACATGCCATGTCCCAGACATGGTCTT--ATGGGGACCTCTCATCTCGG
1 TGCCA-ACGCCATGTCCTAGACATGGTCTTACAT-GGGACCTCTCATATCGG
*
26745280 TGCCAACGCCATGTCCTAGACATGGTCTTACGTGGGACCTCTCATA
1 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATA
26745326 ACCTCAATAA
Statistics
Matches: 80, Mismatches: 10, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
48 2 0.03
49 40 0.50
50 37 0.46
51 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (50 bp):
TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:26772036 original size:43 final size:41
Alignment explanation
Indices: 26771931--26772182 Score: 125
Period size: 43 Copynumber: 5.9 Consensus size: 41
26771921 AAAAACGCTG
*
26771931 CTATAAAACATGACCTTTAGCGGCGCTTTTATAAAAACACCA
1 CTATAAAACATGACCTTTAGCGGCGC-TTTACAAAAACACCA
* * * **
26771973 CTA-AAGAACATAACCATTAGCGGCGCTTTACCCATAAACGTCA
1 CTATAA-AACATGACCTTTAGCGGCGCTTTA--CAAAAACACCA
* * ** *
26772016 CTATAAAACATGATCTTTAGCGGCTCTTTTATCGCAAACGCCA
1 CTATAAAACATGACCTTTAGCGGCGC-TTTA-CAAAAACACCA
** ** *
26772059 CTA-AAGAACATGACCTTTAGTAGCGCTTTTATCGCAAACACCG
1 CTATAA-AACATGACCTTTAGCGGCGC-TTTA-CAAAAACACCA
* * * ** * *
26772102 TTA-AAGAATATGACCTTTAGTGGCGCTTTTATCGCAAACGCCG
1 CTATAA-AACATGACCTTTAGCGGCGC-TTTA-CAAAAACACCA
*
26772145 CTA-AAGAACATGACCTTTAGCAGCGCTTTTATCAAAAA
1 CTATAA-AACATGACCTTTAGCGGCGC-TTTA-CAAAAA
26772183 TGCTGTTAAA
Statistics
Matches: 174, Mismatches: 30, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
41 6 0.03
42 23 0.13
43 139 0.80
44 6 0.03
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.27
Consensus pattern (41 bp):
CTATAAAACATGACCTTTAGCGGCGCTTTACAAAAACACCA
Found at i:26772141 original size:129 final size:127
Alignment explanation
Indices: 26771937--26772177 Score: 279
Period size: 129 Copynumber: 1.9 Consensus size: 127
26771927 GCTGCTATAA
*
26771937 AACATGACCTTTAGCGGCGCTTTTATAAAAACACCACTAAAGAACATAACCATTAGCGGCGCTTT
1 AACATGACCTTTAGCAGCGCTTTTATAAAAACACCACTAAAGAACATAACCATTAGCGGCGCTTT
* * * *
26772002 ACCCATAAACGTCACTATAA-AACATGATCTTTAGCGGCTCTTTTATCGCAAACGCCACTAAAG
66 ACCCA-AAACGCCACTA-AAGAACATGACCTTTAGCAGCGCTTTTATCGCAAACGCCACTAAAG
* ** ** * * * *
26772065 AACATGACCTTTAGTAGCGCTTTTATCGCAAACACCGTTAAAGAATATGACCTTTAGTGGCGCTT
1 AACATGACCTTTAGCAGCGCTTTTAT-AAAAACACCACTAAAGAACATAACCATTAGCGGCGC-T
* *
26772130 TTATCGC-AAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTATC
64 TTA-CCCAAAACGCCACTAAAGAACATGACCTTTAGCAGCGCTTTTATC
26772178 AAAAATGCTG
Statistics
Matches: 93, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
128 26 0.28
129 61 0.66
130 4 0.04
131 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (127 bp):
AACATGACCTTTAGCAGCGCTTTTATAAAAACACCACTAAAGAACATAACCATTAGCGGCGCTTT
ACCCAAAACGCCACTAAAGAACATGACCTTTAGCAGCGCTTTTATCGCAAACGCCACTAAAG
Found at i:26772192 original size:86 final size:86
Alignment explanation
Indices: 26771940--26772182 Score: 267
Period size: 86 Copynumber: 2.8 Consensus size: 86
26771930 GCTATAAAAC
** * * * *
26771940 ATGACCTTTAGCGGCGCTTTTAT-AAAAACACCACTAAAGAACATAACCATTAGCGGCGC-TTTA
1 ATGACCTTTAGCGGCGCTTTTATCGCAAACGCCACTAAAGAACATGACCTTTAGCAGCGCTTTTA
* * ** ** *
26772003 CCCATAAACGTCACTATAA-AAC
66 -TCAAAAACACCGTTA-AAGAAT
* * *
26772025 ATGATCTTTAGCGGCTCTTTTATCGCAAACGCCACTAAAGAACATGACCTTTAGTAGCGCTTTTA
1 ATGACCTTTAGCGGCGCTTTTATCGCAAACGCCACTAAAGAACATGACCTTTAGCAGCGCTTTTA
**
26772090 TCGCAAACACCGTTAAAGAAT
66 TCAAAAACACCGTTAAAGAAT
* *
26772111 ATGACCTTTAGTGGCGCTTTTATCGCAAACGCCGCTAAAGAACATGACCTTTAGCAGCGCTTTTA
1 ATGACCTTTAGCGGCGCTTTTATCGCAAACGCCACTAAAGAACATGACCTTTAGCAGCGCTTTTA
26772176 TCAAAAA
66 TCAAAAA
26772183 TGCTGTTAAA
Statistics
Matches: 131, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
85 23 0.18
86 104 0.79
87 4 0.03
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.27
Consensus pattern (86 bp):
ATGACCTTTAGCGGCGCTTTTATCGCAAACGCCACTAAAGAACATGACCTTTAGCAGCGCTTTTA
TCAAAAACACCGTTAAAGAAT
Found at i:26774576 original size:40 final size:39
Alignment explanation
Indices: 26774492--26774675 Score: 235
Period size: 39 Copynumber: 4.6 Consensus size: 39
26774482 TTGAATGATG
* * * *
26774492 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
26774532 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
26774572 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
26774611 TCCGGGTTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
26774650 TCCGGGCTTAGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
26774676 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
39 72 0.57
40 46 0.37
41 8 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:26774693 original size:79 final size:78
Alignment explanation
Indices: 26774492--26774708 Score: 233
Period size: 79 Copynumber: 2.7 Consensus size: 78
26774482 TTGAATGATG
** * * * **
26774492 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTTACTATATCCGGGTTAAG-TCCGAAGGCATT
*
26774556 TGTGCGAGATACTAAT
63 TGTGCGAGATACTAAA
** *
26774572 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCGAAGGCATTTGT
1 TCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTTGT
*
26774637 GCGAGTTACTAAA
66 GCGAGATACTAAA
* *
26774650 TCCGGGCTTAGTCCCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 TCCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTATATCCGGGTT-AAGTCCGAAGG
26774709 TACGTGATTT
Statistics
Matches: 120, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
78 42 0.35
79 60 0.50
80 18 0.15
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (78 bp):
TCCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTATATCCGGGTTAAGTCCGAAGGCATTTGT
GCGAGATACTAAA
Found at i:26782547 original size:40 final size:39
Alignment explanation
Indices: 26782463--26782684 Score: 240
Period size: 40 Copynumber: 5.6 Consensus size: 39
26782453 TTGAATGATG
* *
26782463 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACTAAT
* *
26782502 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
26782543 TCCGGGCTAAGCCCGAAGGCATTTGTGC--GATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
26782580 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
26782619 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
* *
26782658 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAG-CCCGAAGGCATTTG
26782685 AACGAGTAGC
Statistics
Matches: 161, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
37 37 0.23
39 34 0.21
40 78 0.48
41 11 0.07
42 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:26782716 original size:79 final size:77
Alignment explanation
Indices: 26782516--26782717 Score: 214
Period size: 76 Copynumber: 2.6 Consensus size: 77
26782506 GGACTAAGAT
** * * * *
26782516 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCT-AAGCCCGAAGGCATTTGTGCGATACTAAT
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGATACTAAT
*
26782580 TCCGGGCTAAGC
66 ACCGGGCTAAGC
** *
26782592 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGA--TACTA
*
26782656 ATAACCGGGCTATGTC
64 AT-ACCGGGCTAAG-C
* *
26782672 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
26782718 TACGTGATTT
Statistics
Matches: 108, Mismatches: 12, Indels: 9
0.84 0.09 0.07
Matches are distributed among these distances:
76 32 0.30
77 20 0.19
78 2 0.02
79 29 0.27
80 25 0.23
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (77 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGATACTAAT
ACCGGGCTAAGC
Found at i:26786287 original size:40 final size:40
Alignment explanation
Indices: 26786223--26786328 Score: 115
Period size: 40 Copynumber: 2.6 Consensus size: 40
26786213 TTTTTTGCGC
* * * **
26786223 CATTTTTCAAAAAGCACCGCTAATGGTCTCCCTATAGCGA
1 CATTTTTCAAAAAGCGCCACTAATGCTCGACCTATAGCGA
* * * *
26786263 CGTTTTTCAAAAAGCGCCATTAATGCTCGATCTATAGCGG
1 CATTTTTCAAAAAGCGCCACTAATGCTCGACCTATAGCGA
26786303 CATTTTTCAAAAAGCG-CAGCTAATGC
1 CATTTTTCAAAAAGCGCCA-CTAATGC
26786329 CACTAAAGCT
Statistics
Matches: 54, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
39 2 0.04
40 52 0.96
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (40 bp):
CATTTTTCAAAAAGCGCCACTAATGCTCGACCTATAGCGA
Found at i:26786464 original size:155 final size:155
Alignment explanation
Indices: 26786178--26786469 Score: 433
Period size: 155 Copynumber: 1.9 Consensus size: 155
26786168 AAATAAACAC
** *
26786178 AAAGCTCAACATAAAACGATGGTGTTGTGCTTAATTTTTTTGCGCCATTTTTCAAAAAGCACCGC
1 AAAGCTCAACATAAAACGACCGCGTTGTGCTTAATTTTTTTGCGCCATTTTTCAAAAAGCACCGC
**
26786243 TAATGGTCTCCCTATAGCGACGTTTTTCAAAAAGCGCCATTAATGCTCGATCTATAGCGGCATTT
66 TAATGGTCGACCTATAGCGACGTTTTTCAAAAAGCGCCATTAATGCTCGATCTATAGCGGCATTT
26786308 TTCAAAAAGCGCAGCTAATGCCACT
131 TTCAAAAAGCGCAGCTAATGCCACT
* **
26786333 AAAGCTCAACATAAAACGACCGCGTTGTGCTTAATTTTTTTGCGGCATTTTTCAAAAAGCGTCGC
1 AAAGCTCAACATAAAACGACCGCGTTGTGCTTAATTTTTTTGCGCCATTTTTCAAAAAGCACCGC
** * * ** *
26786398 TAATGGTCGACCTATAGCGGTGTTTTTTGAAAAA-TGCTGTTAATGCTCGATCTATAGCGGCGTT
66 TAATGGTCGACCTATAGCGACG-TTTTTCAAAAAGCGCCATTAATGCTCGATCTATAGCGGCATT
26786462 TTTCAAAA
130 TTTCAAAA
26786470 TGTGTCGATA
Statistics
Matches: 121, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
155 111 0.92
156 10 0.08
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.32
Consensus pattern (155 bp):
AAAGCTCAACATAAAACGACCGCGTTGTGCTTAATTTTTTTGCGCCATTTTTCAAAAAGCACCGC
TAATGGTCGACCTATAGCGACGTTTTTCAAAAAGCGCCATTAATGCTCGATCTATAGCGGCATTT
TTCAAAAAGCGCAGCTAATGCCACT
Found at i:26786482 original size:40 final size:40
Alignment explanation
Indices: 26786374--26786544 Score: 152
Period size: 40 Copynumber: 4.3 Consensus size: 40
26786364 TAATTTTTTT
* * * * *
26786374 GCGGCATTTTTCAAAAAGCGTCGCTAATGGTCGACCTATA
1 GCGGCGTTTTTCAAAATGTGTCGCTAATGCTCGATCTATA
* *
26786414 GCGGTGTTTTTTGAAAAATGCTGT---TAATGCTCGATCTATA
1 GCGGCG-TTTTT-CAAAATG-TGTCGCTAATGCTCGATCTATA
* *
26786454 GCGGCGTTTTTCAAAATGTGTCGATAATGCTTGATCTATA
1 GCGGCGTTTTTCAAAATGTGTCGCTAATGCTCGATCTATA
* * * *
26786494 GCGGTGTTTTTCAAGAA-ATGCCGCTAATGCTCAATCTATA
1 GCGGCGTTTTTCAA-AATGTGTCGCTAATGCTCGATCTATA
*
26786534 GTGGCGTTTTT
1 GCGGCGTTTTT
26786545 TATCCAAACG
Statistics
Matches: 106, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
37 3 0.03
38 6 0.06
39 5 0.05
40 78 0.74
41 7 0.07
42 5 0.05
43 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.36
Consensus pattern (40 bp):
GCGGCGTTTTTCAAAATGTGTCGCTAATGCTCGATCTATA
Found at i:26786513 original size:80 final size:80
Alignment explanation
Indices: 26786374--26786544 Score: 218
Period size: 80 Copynumber: 2.1 Consensus size: 80
26786364 TAATTTTTTT
* * * * * *
26786374 GCGGCATTTTTCAAAAAGCGTCGCTAATGGTCGACCTATAGCGGTGTTTTTTGAAAAATGCTGTT
1 GCGGCGTTTTTCAAAAAGCGTCGATAATGCTCGACCTATAGCGGTGTTTTTTCAAAAATGCCGCT
*
26786439 AATGCTCGATCTATA
66 AATGCTCAATCTATA
* * * *
26786454 GCGGCGTTTTTCAAAATGTGTCGATAATGCTTGATCTATAGCGGTG-TTTTTCAAGAAATGCCGC
1 GCGGCGTTTTTCAAAAAGCGTCGATAATGCTCGACCTATAGCGGTGTTTTTTCAA-AAATGCCGC
26786518 TAATGCTCAATCTATA
65 TAATGCTCAATCTATA
*
26786534 GTGGCGTTTTT
1 GCGGCGTTTTT
26786545 TATCCAAACG
Statistics
Matches: 78, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
79 7 0.09
80 71 0.91
ACGTcount: A:0.25, C:0.17, G:0.23, T:0.36
Consensus pattern (80 bp):
GCGGCGTTTTTCAAAAAGCGTCGATAATGCTCGACCTATAGCGGTGTTTTTTCAAAAATGCCGCT
AATGCTCAATCTATA
Found at i:26789353 original size:17 final size:17
Alignment explanation
Indices: 26789312--26789356 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
26789302 TGAAACCAAA
26789312 AAGAAAAATAAAAAAGT
1 AAGAAAAATAAAAAAGT
*
26789329 TAGTAAAAATAAGAAAA-T
1 AAG-AAAAATAA-AAAAGT
26789347 AAGAAAAATA
1 AAGAAAAATA
26789357 TTTATAATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
17 9 0.38
18 11 0.46
19 4 0.17
ACGTcount: A:0.73, C:0.00, G:0.11, T:0.16
Consensus pattern (17 bp):
AAGAAAAATAAAAAAGT
Found at i:26790785 original size:19 final size:20
Alignment explanation
Indices: 26790755--26790792 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
26790745 CTTTTTATTT
*
26790755 AATTTAAACTAAAATATAAA
1 AATTTAAACTAAAACATAAA
26790775 AATTT-AACTAAAACATAA
1 AATTTAAACTAAAACATAA
26790793 TAAAAGTGCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (20 bp):
AATTTAAACTAAAACATAAA
Found at i:26815300 original size:40 final size:40
Alignment explanation
Indices: 26815242--26815432 Score: 233
Period size: 40 Copynumber: 4.8 Consensus size: 40
26815232 ATAACCACAT
* * * * * * *
26815242 GCACAATTGCCTTTGGGTCTTAACCCGGGT-ATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
* *
26815282 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
26815322 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTA
* *
26815362 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTA
* *
26815402 GCATAAATGCCTTCGGGACTTAGCCCGGATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATA
26815433 TCATTCAAAT
Statistics
Matches: 141, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 137 0.97
41 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTA
Found at i:26820352 original size:38 final size:38
Alignment explanation
Indices: 26820300--26820407 Score: 153
Period size: 38 Copynumber: 2.8 Consensus size: 38
26820290 CTAAATTCCA
* * *
26820300 AAATAATACATGACTCGTATTTACGAGTAGTAGGTCCC
1 AAATAATACATGACTCGTGTTTACGAGTAGCAAGTCCC
* *
26820338 AAATAATACTTGACTCGTGTTTACGAGTAGCAATTCCC
1 AAATAATACATGACTCGTGTTTACGAGTAGCAAGTCCC
* *
26820376 AAATAATACATAACTCATGTTTACGAGTAGCA
1 AAATAATACATGACTCGTGTTTACGAGTAGCA
26820408 GTTTCATACA
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
38 62 1.00
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.30
Consensus pattern (38 bp):
AAATAATACATGACTCGTGTTTACGAGTAGCAAGTCCC
Found at i:26824807 original size:13 final size:13
Alignment explanation
Indices: 26824789--26824814 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26824779 GGTTGTCTCC
26824789 AAAATGAAAATGA
1 AAAATGAAAATGA
26824802 AAAATGAAAATGA
1 AAAATGAAAATGA
26824815 CCTGGAAATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAATGAAAATGA
Found at i:26824807 original size:58 final size:58
Alignment explanation
Indices: 26824685--26824804 Score: 156
Period size: 57 Copynumber: 2.1 Consensus size: 58
26824675 TGAAGATGGC
* *
26824685 GAAAATGGAGAAATGGAAAACATTTAGAAATTATTATGGTTTTCTCCAAAATGGAAAA
1 GAAAATGGAGAAATGGAAAACATTTAGAAATAATTATGGTTGTCTCCAAAATGGAAAA
* * *
26824743 GAAAATGGAGAAATTG-AATCATTT-GAAAATAATTGTGGTTGTCTCCAAAAT-GAAAA
1 GAAAATGGAGAAATGGAAAACATTTAG-AAATAATTATGGTTGTCTCCAAAATGGAAAA
26824799 TGAAAA
1 -GAAAA
26824805 ATGAAAATGA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
56 6 0.11
57 34 0.62
58 15 0.27
ACGTcount: A:0.47, C:0.07, G:0.19, T:0.28
Consensus pattern (58 bp):
GAAAATGGAGAAATGGAAAACATTTAGAAATAATTATGGTTGTCTCCAAAATGGAAAA
Found at i:26827820 original size:23 final size:22
Alignment explanation
Indices: 26827794--26827837 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
26827784 AATTGACTAA
26827794 GTGT-AATTGAATAATGAATATAG
1 GTGTGAATTGAAT--TGAATATAG
26827817 GTGTGGAATTGAATTGAATAT
1 GTGT-GAATTGAATTGAATAT
26827838 CGACTTAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.39, C:0.00, G:0.25, T:0.36
Consensus pattern (22 bp):
GTGTGAATTGAATTGAATATAG
Found at i:26838276 original size:12 final size:12
Alignment explanation
Indices: 26838259--26838283 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26838249 TGAATTATGT
26838259 AAGAATGCACTA
1 AAGAATGCACTA
26838271 AAGAATGCACTA
1 AAGAATGCACTA
26838283 A
1 A
26838284 CTTATGTATT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (12 bp):
AAGAATGCACTA
Found at i:26867026 original size:125 final size:127
Alignment explanation
Indices: 26866841--26867238 Score: 407
Period size: 137 Copynumber: 3.0 Consensus size: 127
26866831 TAGAAAAAGG
* * *
26866841 AATTATATTCTTTCCAAAAGAATATTAA-TTTCTATGTATTTTATATTTTGACCAAAATTAAATA
1 AATTATATTCTTTCCAAAAGAATATTAATTTTC-ATGTCTTTTATATTTTGACCGAAATTAATTA
* * *
26866905 ATATAATTATTTATATTAATAAATT-TA-GT-C-A-AATATTTTGTATGAATCAAATTCATATAT
65 ATATAACTATTTATATTAATAAATTATATATACAATAATATTTTATATGAATCAAATTC--ATA-
26866965 T
127 T
26866966 AATTATATTCTTTCCAAATA-AATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTA
1 AATTATATTCTTTCCAAA-AGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTA
*
26867030 ATATAACTATTTATATTAATAAATTCGGTAAAATATATACAATTAATATTTTATTTGAATCAAAT
65 ATATAACTATTTATATTAATAAA-T---T---ATATATACAA-TAATATTTTATATGAATCAAAT
26867095 TCATAT
122 TCATAT
* **
26867101 -ATTAATTATATCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGAATGAAATTAAT
1 AATT-A-TAT-TCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAAT
* * *
26867165 TAATATAACCATTTATATTAATAAATTCACTAAAATATAAACAATAAATATTTTGTATAAATCAA
63 TAATATAACTATTTATATTAATAAATT-A-T---ATAT--ACAAT-AATATTTTATATGAATCAA
26867230 ATTCATAT
120 ATTCATAT
26867238 A
1 A
26867239 TTAATTTTAT
Statistics
Matches: 231, Mismatches: 15, Indels: 41
0.80 0.05 0.14
Matches are distributed among these distances:
125 76 0.33
126 6 0.03
129 1 0.00
131 1 0.00
132 1 0.00
133 3 0.01
134 4 0.02
135 7 0.03
136 10 0.04
137 101 0.44
138 21 0.09
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.45
Consensus pattern (127 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTTCATGTCTTTTATATTTTGACCGAAATTAATTAA
TATAACTATTTATATTAATAAATTATATATACAATAATATTTTATATGAATCAAATTCATAT
Found at i:26867183 original size:137 final size:137
Alignment explanation
Indices: 26866935--26867250 Score: 499
Period size: 137 Copynumber: 2.3 Consensus size: 137
26866925 AAATTTAGTC
*
26866935 AAATATTTTGTATGAATCAAATTCATATATTAATTATATTCTTTCCAAATAAATATTAATTTTCA
1 AAATATTTTGTATGAATCAAATTCATATATTAATTATA-TCTTTCCAAATAAATATTAATTTCCA
* * **
26867000 TGTCTTTTATATTTTGACCGAAATTAATTAATATAACTATTTATATTAATAAATTCGGTAAAATA
65 TGTCTTTTATATTTTGAACGAAATTAATTAATATAACCATTTATATTAATAAATTCACTAAAATA
*
26867065 TATACAAT
130 TAAACAAT
* * *
26867073 TAATATTTTATTTGAATCAAATTCATATATTAATTATATCTTTCCAAA-AGAATATTAATTTCCA
1 AAATATTTTGTATGAATCAAATTCATATATTAATTATATCTTTCCAAATA-AATATTAATTTCCA
*
26867137 TGTCTTTTATATTTTGAATGAAATTAATTAATATAACCATTTATATTAATAAATTCACTAAAATA
65 TGTCTTTTATATTTTGAACGAAATTAATTAATATAACCATTTATATTAATAAATTCACTAAAATA
26867202 TAAACAAT
130 TAAACAAT
* *
26867210 AAATATTTTGTATAAATCAAATTCATATATTAATTTTATCT
1 AAATATTTTGTATGAATCAAATTCATATATTAATTATATCT
26867251 ATGTTCTCTA
Statistics
Matches: 162, Mismatches: 15, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
136 1 0.01
137 126 0.78
138 35 0.22
ACGTcount: A:0.42, C:0.09, G:0.04, T:0.45
Consensus pattern (137 bp):
AAATATTTTGTATGAATCAAATTCATATATTAATTATATCTTTCCAAATAAATATTAATTTCCAT
GTCTTTTATATTTTGAACGAAATTAATTAATATAACCATTTATATTAATAAATTCACTAAAATAT
AAACAAT
Found at i:26879306 original size:41 final size:41
Alignment explanation
Indices: 26879245--26879353 Score: 166
Period size: 41 Copynumber: 2.7 Consensus size: 41
26879235 GAATGTAAAA
* **
26879245 AAGGGCACGTATGTGTAATTCTGGGGTACCGAAGTACAAAC
1 AAGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAC
*
26879286 AAGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAT
1 AAGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAC
*
26879327 AAGGGCATGTATGTGCAATTC-AGGGTA
1 AAGGGCACGTATGTGCAATTCAAGGGTA
26879354 TAATTAATTA
Statistics
Matches: 63, Mismatches: 5, Indels: 1
0.91 0.07 0.01
Matches are distributed among these distances:
40 6 0.10
41 57 0.90
ACGTcount: A:0.33, C:0.16, G:0.29, T:0.22
Consensus pattern (41 bp):
AAGGGCACGTATGTGCAATTCAAGGGTACCGAAGTACAAAC
Found at i:26879311 original size:21 final size:21
Alignment explanation
Indices: 26879285--26879348 Score: 60
Period size: 21 Copynumber: 3.1 Consensus size: 21
26879275 GAAGTACAAA
26879285 CAAGGGCACGTATGTGCAATT
1 CAAGGGCACGTATGTGCAATT
* * * *
26879306 CAAGGGTACCG-AAGTACAAAT
1 CAAGGGCA-CGTATGTGCAATT
*
26879327 -AAGGGCATGTATGTGCAATT
1 CAAGGGCACGTATGTGCAATT
26879347 CA
1 CA
26879349 GGGTATAATT
Statistics
Matches: 31, Mismatches: 9, Indels: 6
0.67 0.20 0.13
Matches are distributed among these distances:
19 1 0.03
20 13 0.42
21 15 0.48
22 2 0.06
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (21 bp):
CAAGGGCACGTATGTGCAATT
Found at i:26884635 original size:41 final size:41
Alignment explanation
Indices: 26884547--26884637 Score: 101
Period size: 41 Copynumber: 2.2 Consensus size: 41
26884537 AGGGGTATCG
* * *
26884547 AAGTACAAATAGGAGCACATATGTGTAAATCAGGGGTACTA
1 AAGTACAAAAAGGAGCACATATGTGTAAATCAAGGCTACTA
* * * * *
26884588 AAGTACAAAAAGGAGCACGTATTTGTAATTTAAGGCTACTG
1 AAGTACAAAAAGGAGCACATATGTGTAAATCAAGGCTACTA
*
26884629 ACGTACAAA
1 AAGTACAAA
26884638 CAGGGGCATG
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 41 1.00
ACGTcount: A:0.42, C:0.13, G:0.22, T:0.23
Consensus pattern (41 bp):
AAGTACAAAAAGGAGCACATATGTGTAAATCAAGGCTACTA
Found at i:26888007 original size:40 final size:40
Alignment explanation
Indices: 26887923--26888186 Score: 241
Period size: 40 Copynumber: 6.7 Consensus size: 40
26887913 TTGAATGCTG
* * *
26887923 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTA-AGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGA-T-ACTAAA
** *
26887963 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAG-TCCCGAAGGCCTTTGTGCGAGATACTAAA
* *
26888003 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAA
* * * *
26888043 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAA
** * * **
26888083 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAA
* * * *
26888123 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAA
* * *
26888162 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCCTTTG
26888187 AACGAGGAGC
Statistics
Matches: 196, Mismatches: 23, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
38 18 0.09
39 17 0.09
40 149 0.76
41 11 0.06
42 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAA
Found at i:26888060 original size:80 final size:79
Alignment explanation
Indices: 26887923--26888186 Score: 282
Period size: 80 Copynumber: 3.3 Consensus size: 79
26887913 TTGAATGCTG
* * * * **
26887923 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACTATATCCGGACTAAGAT-CCGAAGGCCT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCCT
*
26887986 TTGTGCGAGATACTAA
64 TTGTGCGAGTTACTAA
* * *
26888002 TTCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTT
* *
26888067 CGTGCGAGTTATTAAA
65 TGTGCGAGTTACT-AA
* * * * * *
26888083 TCCGGGTTAAGTCCCGAAGGCAGTCGTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGG-CATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
*
26888147 GTGTGAGTTACTAA
66 GTGCGAGTTACTAA
* *
26888161 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
26888187 AACGAGGAGC
Statistics
Matches: 155, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
78 23 0.15
79 12 0.08
80 111 0.72
81 9 0.06
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.27
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCCTTT
GTGCGAGTTACTAA
Found at i:26895879 original size:39 final size:37
Alignment explanation
Indices: 26895775--26896027 Score: 237
Period size: 39 Copynumber: 6.7 Consensus size: 37
26895765 TTGAATGCTG
* * *
26895775 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACTATA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGT-ACTA-A
** *
26895815 TCCGGACTAAGAT-CCGAAGG-TTTGTGCGAGATACTAA
1 TCCGGGTTAAG-TCCCGAAGGCATTGTGCGAG-TACTAA
26895852 TTCCGGGTTAAGTCCCGAAGGCATTGTGCGAG-A-TAA
1 -TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTACTAA
**
26895888 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTACT-AA
**
26895927 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTACT-AA
* *
26895966 TCCGGGTTATGTCCCGAAGGCATT-TGTGAGTTACTAA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAG-TACTAA
* * *
26896003 ACCGGGCTATGTCCCGAAGGCATTG
1 TCCGGGTTAAGTCCCGAAGGCATTG
26896028 AACGAGGAGC
Statistics
Matches: 190, Mismatches: 12, Indels: 24
0.84 0.05 0.11
Matches are distributed among these distances:
35 24 0.13
36 10 0.05
37 32 0.17
38 25 0.13
39 81 0.43
40 17 0.09
41 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (37 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTACTAA
Found at i:26895988 original size:78 final size:73
Alignment explanation
Indices: 26895839--26896027 Score: 238
Period size: 76 Copynumber: 2.5 Consensus size: 73
26895829 CGAAGGTTTG
* *
26895839 TGCGAGATACTAATTCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATAATCCGGGTTAAGTCCCG
1 TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATAATCCGGGTTAAGTCCCG
26895904 AAGGCATT
66 AAGGCATT
* * *
26895912 CGTGCGAGTT-TTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAATCCGGGTTAT
1 --TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAG--AT-AATCCGGGTTAA
26895976 GTCCCGAAGGCATT
60 GTCCCGAAGGCATT
* * *
26895990 TGTGAGTTACTAAA-CCGGGCTATGTCCCGAAGGCATTG
1 TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTG
26896028 AACGAGGAGC
Statistics
Matches: 100, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
74 27 0.27
75 15 0.15
76 28 0.28
77 5 0.05
78 25 0.25
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (73 bp):
TGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATAATCCGGGTTAAGTCCCG
AAGGCATT
Found at i:26896045 original size:115 final size:112
Alignment explanation
Indices: 26895853--26896060 Score: 240
Period size: 115 Copynumber: 1.8 Consensus size: 112
26895843 AGATACTAAT
* * **
26895853 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATAATCCGGGTTAAGTCCCGAAGGCATTCGTGCG
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATAAACCGGGCTAAGTCCCGAAGGCATTCGAACG
*** *
26895918 AGTTTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAA
66 AGAGCTAAATCC-GGTTAAATCCCGAAGGCATTCGTGCGAGTTTTAAA
* * *
26895966 TCCGGGTTATGTCCCGAAGGCATT-TGTGAGTTACTAAACCGGGCTATGTCCCGAAGGCATT-GA
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAG--A-TAAACCGGGCTAAGTCCCGAAGGCATTCGA
* *
26896029 ACGAGGAGCTATATCCGGTTAAATTCCGAAGG
63 ACGA-GAGCTAAATCCGGTTAAATCCCGAAGG
26896061 TACGTGATTT
Statistics
Matches: 78, Mismatches: 13, Indels: 7
0.80 0.13 0.07
Matches are distributed among these distances:
112 5 0.06
113 23 0.29
114 19 0.24
115 31 0.40
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (112 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATAAACCGGGCTAAGTCCCGAAGGCATTCGAACG
AGAGCTAAATCCGGTTAAATCCCGAAGGCATTCGTGCGAGTTTTAAA
Found at i:26896046 original size:76 final size:73
Alignment explanation
Indices: 26895839--26896027 Score: 229
Period size: 74 Copynumber: 2.5 Consensus size: 73
26895829 CGAAGGTTTG
* *
26895839 TGCGAGATACTAATTCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATAATCCGGGTTAAGTCCCG
1 TGCGAG-TTCTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATAATCCGGGTTAAGTCCCG
26895904 AAGGCATTC
65 AAGGCATTC
* * *
26895913 GTGCGAGTTTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTTTAAATCCGGGTTATGT
1 -TGCGAGTTCTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAG--AT-AATCCGGGTTAAGT
26895978 CCCGAAGGCATT-
61 CCCGAAGGCATTC
* * *
26895990 TGTGAGTTACTAAA-CCGGGCTATGTCCCGAAGGCATTG
1 TGCGAGTT-CTAAATCCGGGTTAAGTCCCGAAGGCATTG
26896028 AACGAGGAGC
Statistics
Matches: 100, Mismatches: 9, Indels: 10
0.84 0.08 0.08
Matches are distributed among these distances:
74 28 0.28
75 14 0.14
76 28 0.28
77 5 0.05
78 25 0.25
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (73 bp):
TGCGAGTTCTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGATAATCCGGGTTAAGTCCCGA
AGGCATTC
Found at i:26906067 original size:50 final size:50
Alignment explanation
Indices: 26906009--26906111 Score: 163
Period size: 50 Copynumber: 2.1 Consensus size: 50
26905999 TCCTCTAGAG
* *
26906009 AACATATGGAAAGCATT-AAACATGTTATATTCTTTCCAAAAAAGAATTAT
1 AACATATGGAAAGCATTAAAAAATGTTATATGCTTTCC-AAAAAGAATTAT
*
26906059 AACATATGGAAAGTATTAAAAAATGTTATATGCTTTCCAAAAAGAATTAT
1 AACATATGGAAAGCATTAAAAAATGTTATATGCTTTCCAAAAAGAATTAT
26906109 AAC
1 AAC
26906112 TAACATGTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
50 31 0.63
51 18 0.37
ACGTcount: A:0.48, C:0.11, G:0.11, T:0.31
Consensus pattern (50 bp):
AACATATGGAAAGCATTAAAAAATGTTATATGCTTTCCAAAAAGAATTAT
Found at i:26909883 original size:28 final size:29
Alignment explanation
Indices: 26909851--26909949 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
26909841 ATAATAAGCC
*
26909851 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
26909879 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
26909907 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
26909936 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26909950 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:26923774 original size:16 final size:16
Alignment explanation
Indices: 26923753--26923797 Score: 69
Period size: 13 Copynumber: 3.0 Consensus size: 16
26923743 AATTACGGAA
26923753 ACGTTATTAACAAATT
1 ACGTTATTAACAAATT
26923769 ACGTTATTAAC-AA--
1 ACGTTATTAACAAATT
26923782 ACGTTATTAACAAATT
1 ACGTTATTAACAAATT
26923798 CCCAATTTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 11 0.42
14 2 0.08
15 2 0.08
16 11 0.42
ACGTcount: A:0.44, C:0.13, G:0.07, T:0.36
Consensus pattern (16 bp):
ACGTTATTAACAAATT
Found at i:26925414 original size:16 final size:17
Alignment explanation
Indices: 26925383--26925415 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
26925373 TAATATTTTA
26925383 AAAATATTAATTTAATAT
1 AAAATATT-ATTTAATAT
26925401 AAAATATT-TTTAATA
1 AAAATATTATTTAATA
26925416 CTATAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AAAATATTATTTAATAT
Found at i:26925499 original size:5 final size:5
Alignment explanation
Indices: 26925489--26925533 Score: 54
Period size: 5 Copynumber: 8.4 Consensus size: 5
26925479 ACTTCAATGG
*
26925489 TAATA TAATA TATAGTAA TACTA TAATA TAATA TAATA TAATA TA
1 TAATA TAATA TA-A-T-A TAATA TAATA TAATA TAATA TAATA TA
26925534 TAACTATTAC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
5 29 0.83
6 2 0.06
7 1 0.03
8 3 0.09
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (5 bp):
TAATA
Found at i:26925515 original size:18 final size:16
Alignment explanation
Indices: 26925489--26925569 Score: 67
Period size: 18 Copynumber: 4.9 Consensus size: 16
26925479 ACTTCAATGG
26925489 TAATATAATATATAGTAA
1 TAATATAATATATA-T-A
*
26925507 TACTATAATATA-ATA
1 TAATATAATATATATA
26925522 TAATATAATATATA-A
1 TAATATAATATATATA
* * *
26925537 CTATTACTAATACATAAAA
1 -TAATA-TAATATAT-ATA
26925556 TAATATAATATATA
1 TAATATAATATATA
26925570 ATTATTACTA
Statistics
Matches: 52, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
15 13 0.25
16 7 0.13
17 15 0.29
18 16 0.31
19 1 0.02
ACGTcount: A:0.56, C:0.05, G:0.01, T:0.38
Consensus pattern (16 bp):
TAATATAATATATATA
Found at i:26925559 original size:34 final size:33
Alignment explanation
Indices: 26925489--26925598 Score: 125
Period size: 34 Copynumber: 3.3 Consensus size: 33
26925479 ACTTCAATGG
* *
26925489 TAATATAATATAT-AGTAATACT-ATAATATAATA
1 TAATATAATATATAACTATTACTAATAATA-AA-A
26925522 TAATATAATATATAACTATTACTAATACATAAAA
1 TAATATAATATATAACTATTACTAATA-ATAAAA
* * *
26925556 TAATATAATATATAATTATTACTAAAAATATAA
1 TAATATAATATATAACTATTACTAATAATAAAA
26925589 TATATATAAT
1 TA-ATATAAT
26925599 TATTATTACA
Statistics
Matches: 68, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
33 20 0.29
34 40 0.59
35 5 0.07
36 3 0.04
ACGTcount: A:0.55, C:0.05, G:0.01, T:0.39
Consensus pattern (33 bp):
TAATATAATATATAACTATTACTAATAATAAAA
Found at i:26925899 original size:244 final size:251
Alignment explanation
Indices: 26925589--26926057 Score: 612
Period size: 249 Copynumber: 1.9 Consensus size: 251
26925579 AAAAATATAA
*
26925589 TATATATAATTATTATTACAATATAAATTATAACAAAAGATATAGTATTACATGATATTATAATG
1 TATATATAATTATTATTA-AATATAAATTACAACAAAAGATATAGTATTACATGATATTATAATG
* * * *
26925654 TTTAATCATTTATGCATATATATAAACT-AT-TA-AT-ATATTATATGATGTGATATAGCATTAT
65 TTTAATCATTGATGCATATATATAAACTAATATATATGATATGATATGATATGATATAGCATTAC
* * * * * * *
26925715 ATAATATAGTAGGATGACTAACTTTCAAATGTATGAAAAACATAAGGACTTTGAGCA-TATTTCA
130 ATAATACAGTAGAAAGACTAACTTTCAAATGTAAGAAAAACATAAAGACTTAGAGCACAATTT-A
*
26925779 ACTAGTACAATAATAAA-ATTAATATATAAAAATAAGTAATAGACAATGTACTACTAT
194 ACTAGTACAATAATAAACAATAATATATAAAAATAAGTAATAGACAATGTACTACTAT
* * * * *
26925836 TATATATAATTATTA-T-AATATACATTACAATAAAAGATATAGTATTGCATGGTATTTTAATGT
1 TATATATAATTATTATTAAATATAAATTACAACAAAAGATATAGTATTACATGATATTATAATGT
* *
26925899 TTAATCATTGATGCATATATATAAATTAATAATATATGATATGATATGATATGATATATCATTAC
66 TTAATCATTGATGCATATATATAAACTAAT-ATATATGATATGATATGATATGATATAGCATTAC
* * ** *
26925964 ATAATACAGTAGAAAGGCTAACTTTCAGATGTAAGAAAAGTATAAAGACTTAGTGCACAATTTAA
130 ATAATACAGTAGAAAGACTAACTTTCAAATGTAAGAAAAACATAAAGACTTAGAGCACAATTTAA
* *
26926029 CTAGTATAATGATAAACAATAATATATAA
195 CTAGTACAATAATAAACAATAATATATAA
26926058 TAATGTGCAA
Statistics
Matches: 188, Mismatches: 27, Indels: 11
0.83 0.12 0.05
Matches are distributed among these distances:
244 66 0.35
245 2 0.01
246 1 0.01
247 17 0.09
248 2 0.01
249 85 0.45
250 15 0.08
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.36
Consensus pattern (251 bp):
TATATATAATTATTATTAAATATAAATTACAACAAAAGATATAGTATTACATGATATTATAATGT
TTAATCATTGATGCATATATATAAACTAATATATATGATATGATATGATATGATATAGCATTACA
TAATACAGTAGAAAGACTAACTTTCAAATGTAAGAAAAACATAAAGACTTAGAGCACAATTTAAC
TAGTACAATAATAAACAATAATATATAAAAATAAGTAATAGACAATGTACTACTAT
Found at i:26928847 original size:13 final size:13
Alignment explanation
Indices: 26928829--26928855 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
26928819 TTGTCCTCAA
26928829 GCAAATAATGTAT
1 GCAAATAATGTAT
26928842 GCAAATAATGTAT
1 GCAAATAATGTAT
26928855 G
1 G
26928856 AATATGCATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.19, T:0.30
Consensus pattern (13 bp):
GCAAATAATGTAT
Found at i:26932306 original size:41 final size:41
Alignment explanation
Indices: 26932240--26932345 Score: 149
Period size: 41 Copynumber: 2.6 Consensus size: 41
26932230 AATGAGATAA
* * * * *
26932240 TTCAAACTTTATGTCTAGCAAGCTTGATGTCGGTGAAATGT
1 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATAT
*
26932281 TTCAGACTTTACGTCTTGCAGGCTTGATGCCGGTGAAATAT
1 TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATAT
*
26932322 TTTAGACTTTACGTCTAGCAGGCT
1 TTCAGACTTTACGTCTAGCAGGCT
26932346 AATTGTTGGT
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 57 1.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.36
Consensus pattern (41 bp):
TTCAGACTTTACGTCTAGCAGGCTTGATGCCGGTGAAATAT
Found at i:26932879 original size:68 final size:70
Alignment explanation
Indices: 26932799--26932949 Score: 189
Period size: 71 Copynumber: 2.2 Consensus size: 70
26932789 CAGGTACACT
* * *
26932799 TTTGGTTATAATATTTGTTAAGC-ATATGTATATATGCATTCGGCTAAT-ATGTTTAAAGTGTAT
1 TTTGGTTATAATATTTGTCAAGCAATATGTATATATGCATTCGGCGAATCATGTTTAAAGAGTAT
26932862 ATACA
66 ATACA
* * * *
26932867 TTTGGTTCTAATATTTGTCATGCATATATGTATATATGCATTCGGCGATTCATGTTTATAGAGTA
1 TTTGGTTATAATATTTGTCAAGCA-ATATGTATATATGCATTCGGCGAATCATGTTTAAAGAGTA
*
26932932 TATGCA
65 TATACA
* *
26932938 TTCGGTTTTAAT
1 TTTGGTTATAAT
26932950 TCTTGATAAT
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
68 20 0.29
70 23 0.33
71 27 0.39
ACGTcount: A:0.28, C:0.09, G:0.17, T:0.45
Consensus pattern (70 bp):
TTTGGTTATAATATTTGTCAAGCAATATGTATATATGCATTCGGCGAATCATGTTTAAAGAGTAT
ATACA
Found at i:26940429 original size:40 final size:41
Alignment explanation
Indices: 26940322--26940462 Score: 223
Period size: 41 Copynumber: 3.5 Consensus size: 41
26940312 AATGAGATAA
* * *
26940322 TTCA-ACTTTACGTCTAGCAAGCTTGATGCTGGTGAAATGT
1 TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAAATGT
26940362 TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAAATGT
1 TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAAATGT
*
26940403 TTCAGACTTTA-GTCTAGCAGGCTTGATGCCGGTGAAATAT
1 TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAAATGT
*
26940443 TTCACACTTTATGTCTAGCA
1 TTCAGACTTTATGTCTAGCA
26940463 AGCTAATTGC
Statistics
Matches: 94, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
40 42 0.45
41 52 0.55
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (41 bp):
TTCAGACTTTATGTCTAGCAGGCTTGATGCCGGTGAAATGT
Found at i:26940474 original size:81 final size:81
Alignment explanation
Indices: 26940322--26940477 Score: 226
Period size: 81 Copynumber: 1.9 Consensus size: 81
26940312 AATGAGATAA
* * * *
26940322 TTCAACTTTACGTCTAGCAAGCTTGATGCTGGTGAAATGTTTCAGACTTTATGTCTAGCAGGCTT
1 TTCAACTTTACGTCTAGCAAGCTTGATGCCGGTGAAATATTTCACACTTTATGTCTAGCAAGCTT
*
26940387 GATGCCGGTGAAATGT
66 AATGCCGGTGAAATGT
*
26940403 TTCAGACTTTA-GTCTAGCAGGCTTGATGCCGGTGAAATATTTCACACTTTATGTCTAGCAAGC-
1 TTCA-ACTTTACGTCTAGCAAGCTTGATGCCGGTGAAATATTTCACACTTTATGTCTAGCAAGCT
26940466 TAATTGCCGGTG
65 TAA-TGCCGGTG
26940478 TATTGAATCA
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
80 2 0.03
81 59 0.88
82 6 0.09
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (81 bp):
TTCAACTTTACGTCTAGCAAGCTTGATGCCGGTGAAATATTTCACACTTTATGTCTAGCAAGCTT
AATGCCGGTGAAATGT
Found at i:26940970 original size:70 final size:69
Alignment explanation
Indices: 26940896--26941030 Score: 157
Period size: 70 Copynumber: 1.9 Consensus size: 69
26940886 TTGATAAATG
* *
26940896 TATGTGGTAAA-TACATGTACATATTTGGTTATAATATTTGTTAAGC-ATATGTATATATGCATT
1 TATGT-GTAAAGTACATATAC--ATTTGGTTATAATATTTGTCAAGCAATATGTATATATGCATT
26940959 CGGCTAA
63 CGGCTAA
* ** * *
26940966 TATGTTTAAAGTGTATATACATTTGGTTCTAATATTTGTCATGCATATATGTATATATGCATTCG
1 TATGTGTAAAGTACATATACATTTGGTTATAATATTTGTCAAGCA-ATATGTATATATGCATTCG
26941031 AGGATTCATG
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
68 21 0.38
69 4 0.07
70 30 0.55
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.44
Consensus pattern (69 bp):
TATGTGTAAAGTACATATACATTTGGTTATAATATTTGTCAAGCAATATGTATATATGCATTCGG
CTAA
Found at i:26959028 original size:22 final size:22
Alignment explanation
Indices: 26959003--26959047 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
26958993 ATAATACGTA
26959003 TTAATTCATAATACAA-TTAATT
1 TTAATTCAT-ATACAATTTAATT
* *
26959025 TTAATTTATATCCAATTTAATT
1 TTAATTCATATACAATTTAATT
26959047 T
1 T
26959048 GGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.40, C:0.09, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAATTCATATACAATTTAATT
Found at i:26963205 original size:46 final size:46
Alignment explanation
Indices: 26963149--26963240 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
26963139 TGACTTTATC
26963149 AACCACAATCGAAGAATAACAATTAATCGGATCAAAATGAGGTGAT
1 AACCACAATCGAAGAATAACAATTAATCGGATCAAAATGAGGTGAT
26963195 AACCACAATCGAAGAATAACAATTAATCGGATCAAAATGAGGTGAT
1 AACCACAATCGAAGAATAACAATTAATCGGATCAAAATGAGGTGAT
26963241 CTTTTAATAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.48, C:0.15, G:0.17, T:0.20
Consensus pattern (46 bp):
AACCACAATCGAAGAATAACAATTAATCGGATCAAAATGAGGTGAT
Found at i:26963633 original size:18 final size:18
Alignment explanation
Indices: 26963610--26963648 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
26963600 CTCTTTTTGC
26963610 TCTTTTTT-ATTCTCTTTT
1 TCTTTTTTGATT-TCTTTT
26963628 TCTTTTTTGATTTCTTTT
1 TCTTTTTTGATTTCTTTT
26963646 TCT
1 TCT
26963649 GTCTTCCTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.05, C:0.15, G:0.03, T:0.77
Consensus pattern (18 bp):
TCTTTTTTGATTTCTTTT
Found at i:26967534 original size:20 final size:20
Alignment explanation
Indices: 26967506--26967544 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
26967496 CAATTTAAAA
*
26967506 TATAAAAATTTATTAATATG
1 TATAAAAATTCATTAATATG
*
26967526 TATATAAATTCATTAATAT
1 TATAAAAATTCATTAATAT
26967545 ATGTAAAAAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.03, G:0.03, T:0.46
Consensus pattern (20 bp):
TATAAAAATTCATTAATATG
Found at i:26967681 original size:20 final size:20
Alignment explanation
Indices: 26967642--26967682 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26967632 AAATATTTTC
*
26967642 AGTAAATCATTTTCTAGAAA
1 AGTAAATCATTTTCCAGAAA
*
26967662 AGTAAATCATTTTCCGGAAA
1 AGTAAATCATTTTCCAGAAA
26967682 A
1 A
26967683 CATTTTACTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (20 bp):
AGTAAATCATTTTCCAGAAA
Found at i:26968937 original size:46 final size:46
Alignment explanation
Indices: 26968865--26968958 Score: 152
Period size: 46 Copynumber: 2.0 Consensus size: 46
26968855 ACAATACTAT
* *
26968865 AACTCGGTATGGTTTCCTTCACTGAAATACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTCCTTCACTGAAACACCATACCTACTTTTCAC
* *
26968911 AACTCAGTATGGTTTTCTTCATTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTCCTTCACTGAAACACCATACCTACTTTTCAC
26968957 AA
1 AA
26968959 TTTGCCATGG
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.29, C:0.27, G:0.10, T:0.35
Consensus pattern (46 bp):
AACTCAGTATGGTTTCCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:26971525 original size:50 final size:50
Alignment explanation
Indices: 26971401--26971697 Score: 310
Period size: 50 Copynumber: 5.8 Consensus size: 50
26971391 GATAATAACA
* * * ** * *
26971401 TGCCAAAGTCATGTCCCAGACATAGTCTTACATGGGATGTTTCATGTAC--
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATAT-CGG
* * * * * **
26971450 TACCAGTGCCATATCCCATATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
** *
26971500 TGCCAATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
*
26971550 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * *
26971600 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATGATCTCAATGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC---GG
* *
26971656 TGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
26971698 TTACCTATAT
Statistics
Matches: 208, Mismatches: 32, Indels: 9
0.84 0.13 0.04
Matches are distributed among these distances:
48 1 0.00
49 35 0.17
50 131 0.63
53 2 0.01
56 39 0.19
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:26975585 original size:28 final size:28
Alignment explanation
Indices: 26975520--26975618 Score: 119
Period size: 28 Copynumber: 3.5 Consensus size: 28
26975510 CATGAGATTG
* * *
26975520 GCACTAAGTGTGCGGGTTCAAATTGTATA
1 GCACTAAGTGTGCGAGTT-AGATTATATA
*
26975549 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTAGATTATATA
* *
26975577 GCACTAAGTGTGCGAGTTCGACTAT-TAA
1 GCACTAAGTGTGCGAGTTAGATTATAT-A
26975605 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
26975619 GGCTTATTAT
Statistics
Matches: 63, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 1 0.02
28 45 0.71
29 17 0.27
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.30
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTAGATTATATA
Found at i:26981525 original size:38 final size:39
Alignment explanation
Indices: 26981409--26981631 Score: 247
Period size: 40 Copynumber: 5.6 Consensus size: 39
26981399 GCTACTCGTT
*
26981409 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATT-TAGTAACTCGCA
*
26981449 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTC-GGACTTAGCCCGGATTTAGTAACTCGCA
* *
26981489 CAAATGCCTTCGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
26981527 CAAATGCCTTC-GATCTTAGTCCGGATTTAGTATCTCACA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
26981566 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
26981607 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
26981632 CATCATTCAA
Statistics
Matches: 162, Mismatches: 15, Indels: 12
0.86 0.08 0.06
Matches are distributed among these distances:
37 1 0.01
38 33 0.20
39 35 0.22
40 81 0.50
41 12 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:26989328 original size:40 final size:40
Alignment explanation
Indices: 26989291--26989515 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
26989281 GCTACTCGTT
*
26989291 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
26989331 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
26989371 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
26989410 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
26989450 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
26989491 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26989516 CATCATTCAA
Statistics
Matches: 167, Mismatches: 13, Indels: 10
0.88 0.07 0.05
Matches are distributed among these distances:
38 2 0.01
39 33 0.20
40 119 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:26989402 original size:79 final size:79
Alignment explanation
Indices: 26989291--26989515 Score: 285
Period size: 79 Copynumber: 2.8 Consensus size: 79
26989281 GCTACTCGTT
* * *
26989291 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
26989356 ATTTAGTAACTCGCA
65 ATTTAGTAACTCGCA
* *
26989371 CAAATGCCTTCGGGCTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCG
1 CAAATGCCTTCGGGCTTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGCCCG
*
26989434 GATTTAGTATCTCGCA
64 GATTTAGTAACTCGCA
* * * * *
26989450 CAAATGCCTTCGGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
26989514 GA
64 GA
26989516 CATCATTCAA
Statistics
Matches: 126, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 4 0.03
79 66 0.52
80 44 0.35
81 12 0.10
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (79 bp):
CAAATGCCTTCGGGCTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
TTTAGTAACTCGCA
Found at i:26989475 original size:119 final size:120
Alignment explanation
Indices: 26989291--26989515 Score: 298
Period size: 119 Copynumber: 1.9 Consensus size: 120
26989281 GCTACTCGTT
26989291 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
* *
26989356 ATTTAGTAAC-TCGCACAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * * **
26989410 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGTATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGA-CATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
* *
26989472 CGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
63 CGGATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
26989516 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
118 6 0.07
119 65 0.71
120 21 0.23
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:26993102 original size:46 final size:46
Alignment explanation
Indices: 26993029--26993161 Score: 187
Period size: 46 Copynumber: 2.9 Consensus size: 46
26993019 TATAACTCAG
* * * *
26993029 TATGGTTTCCTTCACTGAAATATCATACCTACTTTTCACAACTAAA
1 TATGATTTTCTTCACTGAAACACCATACCTACTTTTCACAACTAAA
* * *
26993075 TATGGTTTT-TCTCATTGAAACACCATACCTACTTTTCACAACTCAA
1 TATGATTTTCT-TCACTGAAACACCATACCTACTTTTCACAACTAAA
26993121 TATGATTTTCTTCACTGAAACACCATACCTACTTTTCACAA
1 TATGATTTTCTTCACTGAAACACCATACCTACTTTTCACAA
26993162 TTTGCCATGA
Statistics
Matches: 78, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
45 1 0.01
46 76 0.97
47 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.06, T:0.37
Consensus pattern (46 bp):
TATGATTTTCTTCACTGAAACACCATACCTACTTTTCACAACTAAA
Found at i:26994580 original size:21 final size:20
Alignment explanation
Indices: 26994535--26994580 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
26994525 TTGTTGAAAT
26994535 GGTT-AATTTAATCAATTTA
1 GGTTGAATTTAATCAATTTA
*
26994554 GCTTGAATTTAATTC-ATGTTA
1 GGTTGAATTTAA-TCAAT-TTA
26994575 GGTTGA
1 GGTTGA
26994581 TTGCATTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (20 bp):
GGTTGAATTTAATCAATTTA
Found at i:27002336 original size:24 final size:24
Alignment explanation
Indices: 27002304--27002352 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
27002294 TAACATATAA
27002304 TGATAATTAAATAATGCAAATAGG
1 TGATAATTAAATAATGCAAATAGG
27002328 TGATAATTAAATAATGCAAATAGG
1 TGATAATTAAATAATGCAAATAGG
27002352 T
1 T
27002353 CTTTATGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.16, T:0.31
Consensus pattern (24 bp):
TGATAATTAAATAATGCAAATAGG
Found at i:27004223 original size:19 final size:19
Alignment explanation
Indices: 27004183--27004236 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
27004173 AAAATCAGAG
* *
27004183 TAATTTTCAAAATTTGAAAA
1 TAATTTTTAAAA-TTCAAAA
27004203 TAATTTTTAAAATTCAAAA
1 TAATTTTTAAAATTCAAAA
*
27004222 T-ATTTATAGAAATTC
1 TAATTTTTA-AAATTC
27004237 TAATATTTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
18 6 0.20
19 13 0.43
20 11 0.37
ACGTcount: A:0.48, C:0.06, G:0.04, T:0.43
Consensus pattern (19 bp):
TAATTTTTAAAATTCAAAA
Found at i:27004632 original size:21 final size:21
Alignment explanation
Indices: 27004608--27004647 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
27004598 ACCTTTTCTA
27004608 AAGTTAAAAGTCAAAACTATC
1 AAGTTAAAAGTCAAAACTATC
27004629 AAGTTAAAAGTCAAAACTA
1 AAGTTAAAAGTCAAAACTA
27004648 CATTATTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.55, C:0.12, G:0.10, T:0.23
Consensus pattern (21 bp):
AAGTTAAAAGTCAAAACTATC
Found at i:27016859 original size:51 final size:49
Alignment explanation
Indices: 27016728--27016870 Score: 180
Period size: 50 Copynumber: 2.8 Consensus size: 49
27016718 ATGTAAAAGT
* *
27016728 GAAAGTGATGGTCACGTGTGTAGTACTATGTGTAGGCTACTACATGTACC
1 GAAA-TGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACATGTACC
* * * *
27016778 GGAATGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTACGTGTATC
1 GAAATGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACATGTACC
27016828 -AAATTGTAATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
1 GAAA-TG--ATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
27016871 TGTGAACCGA
Statistics
Matches: 81, Mismatches: 8, Indels: 7
0.84 0.08 0.07
Matches are distributed among these distances:
49 6 0.07
50 41 0.51
51 32 0.40
52 2 0.02
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (49 bp):
GAAATGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACATGTACC
Found at i:27016874 original size:26 final size:26
Alignment explanation
Indices: 27016793--27016874 Score: 66
Period size: 26 Copynumber: 3.2 Consensus size: 26
27016783 GATAGGTCGC
27016793 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
* * *
27016819 ACGTGTA-T-CAAAT-TGTAATGG-TCAC-
1 ATGTGTAGTAC-TATGTG-CA-GGCT-ACT
27016844 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCAGGCTACT
27016870 ATGTG
1 ATGTG
27016875 AACCGAACAT
Statistics
Matches: 41, Mismatches: 6, Indels: 18
0.63 0.09 0.28
Matches are distributed among these distances:
24 3 0.07
25 15 0.37
26 20 0.49
27 3 0.07
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.34
Consensus pattern (26 bp):
ATGTGTAGTACTATGTGCAGGCTACT
Found at i:27016932 original size:45 final size:45
Alignment explanation
Indices: 27016876--27016970 Score: 154
Period size: 45 Copynumber: 2.1 Consensus size: 45
27016866 TACTATGTGA
* * *
27016876 ACCGAACATCATTGATTAGTAAGGTGGTTGCTATGTGCTGATTCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTACGTGCTGAATCC
*
27016921 ACCGGACATCATTGATTAATAAGGTGGTTGCTACGTGCTGAATCC
1 ACCGAACATCATTGATTAATAAGGTGGTTGCTACGTGCTGAATCC
27016966 ACCGA
1 ACCGA
27016971 GTATCTGTTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29
Consensus pattern (45 bp):
ACCGAACATCATTGATTAATAAGGTGGTTGCTACGTGCTGAATCC
Found at i:27021290 original size:46 final size:46
Alignment explanation
Indices: 27021196--27021324 Score: 141
Period size: 46 Copynumber: 2.8 Consensus size: 46
27021186 TATCTCTGGT
** * * ** * *
27021196 TTCTCGAGTCTATAACAAATGCAGGAGCTTAGAAAATATTTTTATA
1 TTCTCGAGTCTGCAACATATGCAGGAGCTCAGAACCTAGTCTTATA
*
27021242 TTCTCGAGTCTGCAACATATGCAGGAGCTCAGAACCTAGTCTTGTA
1 TTCTCGAGTCTGCAACATATGCAGGAGCTCAGAACCTAGTCTTATA
* ** *
27021288 TTCTCGAGTTTGCAATGTATGCACGAGCTCAGAACCT
1 TTCTCGAGTCTGCAACATATGCAGGAGCTCAGAACCT
27021325 GGGCAAACTC
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 70 1.00
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (46 bp):
TTCTCGAGTCTGCAACATATGCAGGAGCTCAGAACCTAGTCTTATA
Found at i:27026963 original size:46 final size:46
Alignment explanation
Indices: 27026912--27027002 Score: 110
Period size: 46 Copynumber: 2.0 Consensus size: 46
27026902 AAAATTTCAA
**
27026912 AACCTAATCCTGTATTCTTGAGTCCGCAACATATGAAGGAACTCAG
1 AACCTAATCCTGTATTCTCAAGTCCGCAACATATGAAGGAACTCAG
* * ** * *
27026958 AACCTATTCTTGTATTCTCAAGTGTGCAACATATGCAGGAGCTCA
1 AACCTAATCCTGTATTCTCAAGTCCGCAACATATGAAGGAACTCA
27027003 AACTTAGGTA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.31, C:0.23, G:0.18, T:0.29
Consensus pattern (46 bp):
AACCTAATCCTGTATTCTCAAGTCCGCAACATATGAAGGAACTCAG
Found at i:27027464 original size:25 final size:26
Alignment explanation
Indices: 27027410--27027466 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
27027400 ATTTATAAAT
* *
27027410 TTGAAAAATATGAAATATTAATTGAG
1 TTGAATAATATGAAATATTAATGGAG
*
27027436 TTGAATAATA-GAAGTATTAGATGGA-
1 TTGAATAATATGAAATATTA-ATGGAG
27027461 TTGAAT
1 TTGAAT
27027467 TTGTATATTT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 14 0.52
26 13 0.48
ACGTcount: A:0.46, C:0.00, G:0.19, T:0.35
Consensus pattern (26 bp):
TTGAATAATATGAAATATTAATGGAG
Found at i:27027814 original size:12 final size:12
Alignment explanation
Indices: 27027797--27027823 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
27027787 CCTTCTTCTC
27027797 CCCTTTCCCCTT
1 CCCTTTCCCCTT
27027809 CCCTTTCCCCTT
1 CCCTTTCCCCTT
27027821 CCC
1 CCC
27027824 CTTGGTTTGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.00, C:0.63, G:0.00, T:0.37
Consensus pattern (12 bp):
CCCTTTCCCCTT
Found at i:27031007 original size:59 final size:58
Alignment explanation
Indices: 27030934--27031132 Score: 195
Period size: 59 Copynumber: 3.3 Consensus size: 58
27030924 AATACTAAGA
*
27030934 ATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTAAAATTAT
1 ATTTTA-TATATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTAAAATTAT
* ** * * * * * * *
27030993 ATTTTATAGTATTATATA-TTATGATTTTAGTAAATTCATATAAGAA-TATTTAATACTAAGA
1 ATTTTATA-TATTATATATTTTTG-TTAAATTATATTTA-ATAATAATTATTTAA-AATTA-T
* *
27031054 ATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTTAAATTAT
1 ATTTTA-TATATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTAAAATTAT
27031113 ATTTTATAATATTATATATT
1 ATTTTAT-ATATTATATATT
27031133 ATAAATTTAG
Statistics
Matches: 107, Mismatches: 24, Indels: 18
0.72 0.16 0.12
Matches are distributed among these distances:
58 7 0.07
59 47 0.44
60 18 0.17
61 29 0.27
62 6 0.06
ACGTcount: A:0.42, C:0.01, G:0.04, T:0.54
Consensus pattern (58 bp):
ATTTTATATATTATATATTTTTGTTAAATTATATTTAATAATAATTATTTAAAATTAT
Found at i:27031068 original size:61 final size:59
Alignment explanation
Indices: 27030912--27031082 Score: 159
Period size: 59 Copynumber: 2.8 Consensus size: 59
27030902 TGATACAATC
* * * *
27030912 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTA
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATA-TTATGTTAAAGTAAATTCA
* * * * * **
27030972 ATAATAATTATTTAA-AATTA-TATTTTA-TAGTATTATATATTATGATTTTAGTAAATTCA
1 ATAAGAA-TATTTAATACTAAGAATTTTATTA-AATTATATATTATG-TTAAAGTAAATTCA
*
27031031 TATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAA
1 -ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATA-TTATGTTAAA
27031083 TTATATTTAA
Statistics
Matches: 84, Mismatches: 19, Indels: 15
0.71 0.16 0.13
Matches are distributed among these distances:
58 6 0.07
59 30 0.36
60 18 0.21
61 24 0.29
62 6 0.07
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (59 bp):
ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTATGTTAAAGTAAATTCA
Found at i:27031076 original size:18 final size:17
Alignment explanation
Indices: 27031054--27031188 Score: 77
Period size: 18 Copynumber: 8.0 Consensus size: 17
27031044 AATACTAAGA
27031054 ATTTTATTAAATTATAT
1 ATTTTATTAAATTATAT
*
27031071 ATTTTTGTTAAA-T-TAT
1 A-TTTTATTAAATTATAT
* *
27031087 A-TTTAAT-AATAAT-T
1 ATTTTATTAAATTATAT
* *
27031101 ATTTTAAATTATATTTTAT
1 ATTTT--ATTAAATTATAT
* *
27031120 AATATTA-TATATTATA-
1 -ATTTTATTAAATTATAT
* *
27031136 AATTTAGTAAATTCATAT
1 ATTTTATTAAATT-ATAT
*
27031154 ATTTTAGTAAATTATAT
1 ATTTTATTAAATTATAT
27031171 ATTTTTATTAAATTATAT
1 A-TTTTATTAAATTATAT
27031189 TTAATAATAA
Statistics
Matches: 90, Mismatches: 15, Indels: 25
0.69 0.12 0.19
Matches are distributed among these distances:
13 2 0.02
14 6 0.07
15 8 0.09
16 9 0.10
17 20 0.22
18 40 0.44
19 1 0.01
20 4 0.04
ACGTcount: A:0.41, C:0.01, G:0.02, T:0.56
Consensus pattern (17 bp):
ATTTTATTAAATTATAT
Found at i:27031084 original size:120 final size:120
Alignment explanation
Indices: 27030912--27031154 Score: 450
Period size: 120 Copynumber: 2.0 Consensus size: 120
27030902 TGATACAATC
27030912 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
* * *
27030977 AATTATTTAAAATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCAT
66 AATTATTTAAAATTATATTTTATAATATTATATATTATAAATTTAGTAAATTCAT
27031032 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
1 ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
*
27031097 AATTATTTTAAATTATATTTTATAATATTATATATTATAAATTTAGTAAATTCAT
66 AATTATTTAAAATTATATTTTATAATATTATATATTATAAATTTAGTAAATTCAT
27031152 ATA
1 ATA
27031155 TTTTAGTAAA
Statistics
Matches: 119, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
120 119 1.00
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.51
Consensus pattern (120 bp):
ATAAGAATATTTAATACTAAGAATTTTATTAAATTATATATTTTTGTTAAATTATATTTAATAAT
AATTATTTAAAATTATATTTTATAATATTATATATTATAAATTTAGTAAATTCAT
Found at i:27031107 original size:26 final size:25
Alignment explanation
Indices: 27031069--27031127 Score: 82
Period size: 26 Copynumber: 2.3 Consensus size: 25
27031059 ATTAAATTAT
*
27031069 ATATTTTTGTTAAATTATATTTAATA
1 ATATTATT-TTAAATTATATTTAATA
*
27031095 ATAATTATTTTAAATTATATTTTATA
1 AT-ATTATTTTAAATTATATTTAATA
27031121 ATATTAT
1 ATATTAT
27031128 ATATTATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
25 5 0.17
26 20 0.67
27 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (25 bp):
ATATTATTTTAAATTATATTTAATA
Found at i:27031126 original size:15 final size:15
Alignment explanation
Indices: 27031082--27031136 Score: 55
Period size: 15 Copynumber: 3.9 Consensus size: 15
27031072 TTTTTGTTAA
*
27031082 ATTATATTTAATAAT
1 ATTATATTTTATAAT
*
27031097 AAT-TA-TTT-TAA-
1 ATTATATTTTATAAT
27031108 ATTATATTTTATAAT
1 ATTATATTTTATAAT
*
27031123 ATTATATATTATAA
1 ATTATATTTTATAA
27031137 ATTTAGTAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
11 2 0.06
12 5 0.16
13 5 0.16
14 5 0.16
15 15 0.47
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
ATTATATTTTATAAT
Found at i:27050463 original size:19 final size:18
Alignment explanation
Indices: 27050439--27050481 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
27050429 GTGACAAGGA
27050439 GTGCACGACTAGCAAGGGT
1 GTGCACG-CTAGCAAGGGT
*
27050458 GTGCAC-TTAGCAAGGGT
1 GTGCACGCTAGCAAGGGT
*
27050475 GCGCACG
1 GTGCACG
27050482 GGCTTGAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 15 0.71
19 6 0.29
ACGTcount: A:0.23, C:0.23, G:0.37, T:0.16
Consensus pattern (18 bp):
GTGCACGCTAGCAAGGGT
Found at i:27050470 original size:17 final size:17
Alignment explanation
Indices: 27050448--27050480 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
27050438 AGTGCACGAC
*
27050448 TAGCAAGGGTGTGCACT
1 TAGCAAGGGTGCGCACT
27050465 TAGCAAGGGTGCGCAC
1 TAGCAAGGGTGCGCAC
27050481 GGGCTTGAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.21, G:0.36, T:0.18
Consensus pattern (17 bp):
TAGCAAGGGTGCGCACT
Found at i:27051186 original size:29 final size:30
Alignment explanation
Indices: 27051128--27051186 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
27051118 TGCCATTGAA
* * * *
27051128 AATATTTACCAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAGAGACAACCAAATTTT
27051158 AATATTTACAAAAAGA-ACAACCAAATTTT
1 AATATTTACAAAAAGAGACAACCAAATTTT
27051187 GCAAATAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 10 0.40
30 15 0.60
ACGTcount: A:0.49, C:0.14, G:0.05, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACAACCAAATTTT
Found at i:27069928 original size:10 final size:10
Alignment explanation
Indices: 27069913--27069962 Score: 61
Period size: 10 Copynumber: 5.2 Consensus size: 10
27069903 ATGCAATATA
27069913 TCATACAAAT
1 TCATACAAAT
*
27069923 TCATACACGA-
1 TCATACA-AAT
27069933 TC--ACAAAT
1 TCATACAAAT
27069941 TCATACAAAT
1 TCATACAAAT
27069951 TCATACAAAT
1 TCATACAAAT
27069961 TC
1 TC
27069963 GACATGCTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
7 1 0.03
8 5 0.15
10 27 0.79
11 1 0.03
ACGTcount: A:0.46, C:0.24, G:0.02, T:0.28
Consensus pattern (10 bp):
TCATACAAAT
Found at i:27074629 original size:25 final size:25
Alignment explanation
Indices: 27074595--27074698 Score: 111
Period size: 25 Copynumber: 4.2 Consensus size: 25
27074585 TGATGTAAAC
* *
27074595 GGTAAGCTCCTCCGAGCTGAATAAT
1 GGTAAACTCATCCGAGCTGAATAAT
*
27074620 GGTAAACTCCTCCGAGCTGAATAAT
1 GGTAAACTCATCCGAGCTGAATAAT
* * ** *
27074645 GGTAAGCTCATGCGAGCTGTGTATT
1 GGTAAACTCATCCGAGCTGAATAAT
* *
27074670 GGTAAACTCATACGAGCTGAA-ATT
1 GGTAAACTCATCCGAGCTGAATAAT
27074694 GGTAA
1 GGTAA
27074699 CCCTAATGAC
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
24 8 0.12
25 60 0.88
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (25 bp):
GGTAAACTCATCCGAGCTGAATAAT
Found at i:27074673 original size:50 final size:49
Alignment explanation
Indices: 27074595--27074698 Score: 127
Period size: 50 Copynumber: 2.1 Consensus size: 49
27074585 TGATGTAAAC
* * *
27074595 GGTAAGCTCCTCCGAGCTGAATAATGGTAAACTCCTCCGAGCTGAATAAT
1 GGTAAGCTCATCCGAGCTGAATAATGGTAAACTCATACGAGCTGAA-AAT
* ** * *
27074645 GGTAAGCTCATGCGAGCTGTGTATTGGTAAACTCATACGAGCTGAAATT
1 GGTAAGCTCATCCGAGCTGAATAATGGTAAACTCATACGAGCTGAAAAT
27074694 GGTAA
1 GGTAA
27074699 CCCTAATGAC
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
49 7 0.15
50 39 0.85
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (49 bp):
GGTAAGCTCATCCGAGCTGAATAATGGTAAACTCATACGAGCTGAAAAT
Done.