Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 94 of 170
Found at i:29397592 original size:14 final size:15
Alignment explanation
Indices: 29397573--29397605 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
29397563 ATTTTTTTGC
29397573 ATAAA-TATAAAAAA
1 ATAAATTATAAAAAA
*
29397587 ATAAATTATATAAAA
1 ATAAATTATAAAAAA
29397602 ATAA
1 ATAA
29397606 GATGATTTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 5 0.29
15 12 0.71
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (15 bp):
ATAAATTATAAAAAA
Found at i:29398439 original size:20 final size:19
Alignment explanation
Indices: 29398410--29398467 Score: 55
Period size: 20 Copynumber: 2.9 Consensus size: 19
29398400 TTTTTTAAAA
*
29398410 ATAAAAATTTTAAAATTTTT
1 ATAAATATTTT-AAATTTTT
*
29398430 ATAAATATTTTGAA-TTTT
1 ATAAATATTTTAAATTTTT
*
29398448 AAAAATTATTTTCAAATTTT
1 ATAAA-TATTTT-AAATTTT
29398468 GAAAATTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
18 8 0.26
19 8 0.26
20 12 0.39
21 3 0.10
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (19 bp):
ATAAATATTTTAAATTTTT
Found at i:29398457 original size:19 final size:19
Alignment explanation
Indices: 29398426--29398481 Score: 69
Period size: 20 Copynumber: 2.9 Consensus size: 19
29398416 ATTTTAAAAT
*
29398426 TTTTATAAA-TATTTTGAA
1 TTTTAAAAATTATTTTGAA
*
29398444 TTTTAAAAATTATTTTCAAA
1 TTTTAAAAATTATTTT-GAA
*
29398464 TTTTGAAAATTATTTTGA
1 TTTTAAAAATTATTTTGA
29398482 TCTTTTGTTA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 8 0.25
19 7 0.22
20 17 0.53
ACGTcount: A:0.39, C:0.02, G:0.05, T:0.54
Consensus pattern (19 bp):
TTTTAAAAATTATTTTGAA
Found at i:29398472 original size:20 final size:19
Alignment explanation
Indices: 29398416--29398479 Score: 67
Period size: 20 Copynumber: 3.3 Consensus size: 19
29398406 AAAAATAAAA
*
29398416 ATTTTAAAATTTTTATAAA-T
1 ATTTT-AAA-TTTTAAAAATT
*
29398436 ATTTTGAATTTTAAAAATT
1 ATTTTAAATTTTAAAAATT
*
29398455 ATTTTCAAATTTTGAAAATT
1 ATTTT-AAATTTTAAAAATT
29398475 ATTTT
1 ATTTT
29398480 GATCTTTTGT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
18 8 0.21
19 8 0.21
20 22 0.58
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.55
Consensus pattern (19 bp):
ATTTTAAATTTTAAAAATT
Found at i:29402562 original size:22 final size:22
Alignment explanation
Indices: 29402534--29402577 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
29402524 ATTTGGTTTT
29402534 TATATTTTCGTACATAATTATG
1 TATATTTTCGTACATAATTATG
29402556 TATATTTTCGTACATAATTATG
1 TATATTTTCGTACATAATTATG
29402578 AGAGTATAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.09, G:0.09, T:0.50
Consensus pattern (22 bp):
TATATTTTCGTACATAATTATG
Found at i:29402718 original size:13 final size:14
Alignment explanation
Indices: 29402692--29402718 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
29402682 TTGTTAACAC
29402692 CGTTAAATTTTTTT
1 CGTTAAATTTTTTT
29402706 CGTTAAATTTTTT
1 CGTTAAATTTTTT
29402719 GGTGACATTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.07, G:0.07, T:0.63
Consensus pattern (14 bp):
CGTTAAATTTTTTT
Found at i:29406740 original size:43 final size:43
Alignment explanation
Indices: 29406693--29406834 Score: 194
Period size: 43 Copynumber: 3.3 Consensus size: 43
29406683 TTTTTAAAAA
* * *
29406693 AAACGCCGCTAAAGACTAAGACCTTTAGCGGCGCTCTTCTCAC
1 AAACGCCACTAAAGACTATGACCTTTAGCGGCGCTTTTCTCAC
* * * *
29406736 AAACGCCACTAAAAACCATGACCTTTAGCGGCACTTTTCCCAC
1 AAACGCCACTAAAGACTATGACCTTTAGCGGCGCTTTTCTCAC
* *
29406779 AAACGCCACTATAGACTATGACCTTTAGCGGCGCTTTTATCAC
1 AAACGCCACTAAAGACTATGACCTTTAGCGGCGCTTTTCTCAC
*
29406822 AAACGCCGCTAAA
1 AAACGCCACTAAA
29406835 AACATAATAT
Statistics
Matches: 84, Mismatches: 15, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 84 1.00
ACGTcount: A:0.31, C:0.32, G:0.15, T:0.22
Consensus pattern (43 bp):
AAACGCCACTAAAGACTATGACCTTTAGCGGCGCTTTTCTCAC
Found at i:29410412 original size:7 final size:7
Alignment explanation
Indices: 29410400--29410458 Score: 52
Period size: 7 Copynumber: 8.4 Consensus size: 7
29410390 CTAATTAATT
29410400 TAAACCC
1 TAAACCC
29410407 TAAACCC
1 TAAACCC
29410414 T-AACCC
1 TAAACCC
29410420 --AACCC
1 TAAACCC
29410425 TTAAATCCC
1 -TAAA-CCC
* *
29410434 TAAATCA
1 TAAACCC
29410441 TAAACCC
1 TAAACCC
29410448 TAAATCCC
1 TAAA-CCC
29410456 TAA
1 TAA
29410459 CTCTTAACCC
Statistics
Matches: 43, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
5 5 0.12
6 5 0.12
7 18 0.42
8 12 0.28
9 3 0.07
ACGTcount: A:0.42, C:0.37, G:0.00, T:0.20
Consensus pattern (7 bp):
TAAACCC
Found at i:29410453 original size:22 final size:22
Alignment explanation
Indices: 29410420--29410472 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
29410410 ACCCTAACCC
29410420 AACCCTTAAATCCCTAAATCATA
1 AACCC-TAAATCCCTAAATCATA
* *
29410443 AACCCTAAATCCCTAACTCTTA
1 AACCCTAAATCCCTAAATCATA
*
29410465 ACCCCTAA
1 AACCCTAA
29410473 CTCTTAACCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
22 22 0.81
23 5 0.19
ACGTcount: A:0.40, C:0.36, G:0.00, T:0.25
Consensus pattern (22 bp):
AACCCTAAATCCCTAAATCATA
Found at i:29410470 original size:14 final size:14
Alignment explanation
Indices: 29410453--29410481 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
29410443 AACCCTAAAT
29410453 CCCTAACTCTTAAC
1 CCCTAACTCTTAAC
29410467 CCCTAACTCTTAAC
1 CCCTAACTCTTAAC
29410481 C
1 C
29410482 ATTAAATCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.45, G:0.00, T:0.28
Consensus pattern (14 bp):
CCCTAACTCTTAAC
Found at i:29410762 original size:7 final size:7
Alignment explanation
Indices: 29410750--29410877 Score: 57
Period size: 7 Copynumber: 18.1 Consensus size: 7
29410740 ACTAGTTAAT
29410750 CTAAACC
1 CTAAACC
29410757 CTAAACC
1 CTAAACC
*
29410764 ATAAA-C
1 CTAAACC
*
29410770 TTAAACC
1 CTAAACC
29410777 CTAAAACC
1 CT-AAACC
*
29410785 ATAAACC
1 CTAAACC
* *
29410792 CTTAACA
1 CTAAACC
29410799 C-ATAACC
1 CTA-AACC
29410806 TCTAAACC
1 -CTAAACC
*
29410814 TTAAACC
1 CTAAACC
* *
29410821 C-CAGCC
1 CTAAACC
*
29410827 TTTAAACC
1 -CTAAACC
*
29410835 ATAAACC
1 CTAAACC
*
29410842 ATAAACC
1 CTAAACC
*
29410849 GTAAACC
1 CTAAACC
29410856 AC-AAACC
1 -CTAAACC
* *
29410863 ATAACCC
1 CTAAACC
29410870 CTAAACC
1 CTAAACC
29410877 C
1 C
29410878 ATAATCCACA
Statistics
Matches: 89, Mismatches: 23, Indels: 18
0.68 0.18 0.14
Matches are distributed among these distances:
6 8 0.09
7 66 0.74
8 14 0.16
9 1 0.01
ACGTcount: A:0.45, C:0.36, G:0.02, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:29410776 original size:20 final size:21
Alignment explanation
Indices: 29410751--29410790 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
29410741 CTAGTTAATC
29410751 TAAACCCT-AAACCATAAACT
1 TAAACCCTAAAACCATAAACT
29410771 TAAACCCTAAAACCATAAAC
1 TAAACCCTAAAACCATAAAC
29410791 CCTTAACACA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.53, C:0.30, G:0.00, T:0.17
Consensus pattern (21 bp):
TAAACCCTAAAACCATAAACT
Found at i:29410820 original size:15 final size:14
Alignment explanation
Indices: 29410750--29410896 Score: 75
Period size: 14 Copynumber: 10.4 Consensus size: 14
29410740 ACTAGTTAAT
*
29410750 CTAAACCCTAAACC
1 CTAAACCATAAACC
* *
29410764 ATAAA-CTTAAACC
1 CTAAACCATAAACC
29410777 CTAAAACCATAAACC
1 CT-AAACCATAAACC
*
29410792 CTTAACACAT-AACC
1 CTAAAC-CATAAACC
*
29410806 TCTAAACCTTAAACC
1 -CTAAACCATAAACC
* * *
29410821 C-CAGCCTTTAAACC
1 CTAAACC-ATAAACC
*
29410835 ATAAACCATAAACC
1 CTAAACCATAAACC
* *
29410849 GTAAACCACAAACC
1 CTAAACCATAAACC
* * *
29410863 ATAACCCCTAAACC
1 CTAAACCATAAACC
* *
29410877 CATAATCCACAAACC
1 C-TAAACCATAAACC
*
29410892 TTAAA
1 CTAAA
29410897 ATGGTAACAC
Statistics
Matches: 100, Mismatches: 25, Indels: 16
0.71 0.18 0.11
Matches are distributed among these distances:
13 11 0.11
14 55 0.55
15 34 0.34
ACGTcount: A:0.46, C:0.35, G:0.01, T:0.18
Consensus pattern (14 bp):
CTAAACCATAAACC
Found at i:29410853 original size:21 final size:21
Alignment explanation
Indices: 29410829--29410896 Score: 73
Period size: 21 Copynumber: 3.2 Consensus size: 21
29410819 CCCCAGCCTT
*
29410829 TAAACCATAAACCATAAACCG
1 TAAACCATAAACCATAAACCC
* *
29410850 TAAACCACAAACCATAACCCC
1 TAAACCATAAACCATAAACCC
* * *
29410871 TAAACCCATAATCCACAAACCT
1 TAAA-CCATAAACCATAAACCC
29410893 TAAA
1 TAAA
29410897 ATGGTAACAC
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
21 22 0.58
22 16 0.42
ACGTcount: A:0.50, C:0.34, G:0.01, T:0.15
Consensus pattern (21 bp):
TAAACCATAAACCATAAACCC
Found at i:29411168 original size:42 final size:42
Alignment explanation
Indices: 29411109--29411228 Score: 179
Period size: 41 Copynumber: 2.9 Consensus size: 42
29411099 TTTAAATCCT
**
29411109 TGAGCATTAGCGGCGCTTTATAAAAAACGCCGCTAAAAGCCC
1 TGAGCATTAGCGGCGCTTTCCAAAAAACGCCGCTAAAAGCCC
*
29411151 TGAGCATTAGCGGCGCTTTCCAAAAAACGCCGCT-AAAGCCT
1 TGAGCATTAGCGGCGCTTTCCAAAAAACGCCGCTAAAAGCCC
* * *
29411192 TGAGCATTAGTGGCGTTTTCCCAAAAACGCCGCTAAA
1 TGAGCATTAGCGGCGCTTTCCAAAAAACGCCGCTAAA
29411229 TCCTCGAAAG
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
41 37 0.52
42 34 0.48
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.21
Consensus pattern (42 bp):
TGAGCATTAGCGGCGCTTTCCAAAAAACGCCGCTAAAAGCCC
Found at i:29413532 original size:4 final size:4
Alignment explanation
Indices: 29413523--29413550 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
29413513 TACACTGTTG
29413523 GTAT GTAT GTAT GTAT GTAT GTAT GTAT
1 GTAT GTAT GTAT GTAT GTAT GTAT GTAT
29413551 CACATTCATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
GTAT
Found at i:29423346 original size:23 final size:22
Alignment explanation
Indices: 29423294--29423346 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
29423284 TCCACGTCTT
*
29423294 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
29423316 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
29423339 TTTCTTTT
1 TTTCTTTT
29423347 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:29430421 original size:20 final size:20
Alignment explanation
Indices: 29430392--29430430 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
29430382 AGATATCATC
29430392 ATTTTCAACTTAATTTGAAT
1 ATTTTCAACTTAATTTGAAT
*
29430412 ATTTTTAACTTAATTTGAA
1 ATTTTCAACTTAATTTGAA
29430431 AGAAATAGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.36, C:0.08, G:0.05, T:0.51
Consensus pattern (20 bp):
ATTTTCAACTTAATTTGAAT
Found at i:29433682 original size:27 final size:27
Alignment explanation
Indices: 29433619--29433704 Score: 95
Period size: 27 Copynumber: 3.2 Consensus size: 27
29433609 ACTCCCAAAC
*
29433619 TGTTATAAAATGACTGTTATGGCCCCCA
1 TGTTATAAAATGACTGTTAT-GCCCCTA
* **
29433647 CGTGGTAAAATGACTGTTATGCCCCTA
1 TGTTATAAAATGACTGTTATGCCCCTA
* *
29433674 TGTTATAAAATGACCG-TATG-CTCTA
1 TGTTATAAAATGACTGTTATGCCCCTA
29433699 TGTTAT
1 TGTTAT
29433705 GTATGAGTAT
Statistics
Matches: 49, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
25 10 0.20
26 4 0.08
27 18 0.37
28 17 0.35
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.35
Consensus pattern (27 bp):
TGTTATAAAATGACTGTTATGCCCCTA
Found at i:29437773 original size:16 final size:15
Alignment explanation
Indices: 29437748--29437781 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
29437738 AAAGCTGATA
*
29437748 ATAATTAATATACATT
1 ATAATAAATATA-ATT
29437764 ATAATAAATATAATT
1 ATAATAAATATAATT
29437779 ATA
1 ATA
29437782 TTAATTATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:29450595 original size:6 final size:6
Alignment explanation
Indices: 29450584--29450612 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
29450574 AAGATAAACC
29450584 AGAAAA AGAAAA AGAAAA AGAAAA AGAAA
1 AGAAAA AGAAAA AGAAAA AGAAAA AGAAA
29450613 TTACTTTTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (6 bp):
AGAAAA
Found at i:29451608 original size:16 final size:16
Alignment explanation
Indices: 29451570--29451609 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
29451560 AAATGTAATT
*
29451570 ATAAAAATAAAAAGTA
1 ATAAAAATAAAAAATA
* *
29451586 GTTAAAATAAAAAATA
1 ATAAAAATAAAAAATA
29451602 ATAAAAAT
1 ATAAAAAT
29451610 TCCATTTTTA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
ATAAAAATAAAAAATA
Found at i:29463492 original size:50 final size:50
Alignment explanation
Indices: 29463438--29463631 Score: 178
Period size: 50 Copynumber: 3.9 Consensus size: 50
29463428 ATGTCGTTGA
* * *
29463438 CACTGAGATAAGAGGTCCCATGTAGGAGCATGTCTGGGATATGGCGTTGG
1 CACTGAGATAAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCATTGG
* ** * *
29463488 CACTGAGATGAGAGGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGG
1 CACTGAGATAAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCATTGG
** * ** *
29463538 CACCAATATAAGAAATCCCATGTAAGACCATATCTGGGATATGGCATTGG
1 CACTGAGATAAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCATTGG
* * * * *
29463588 TAGTACAGGA-AACA--TCCCATGTAAGACCATGTCTGGGACATGGC
1 CACT-GA-GATAAGAGGTCCCATGTAAGACCATGTCTGGGATATGGC
29463632 TTTGACATGT
Statistics
Matches: 115, Mismatches: 27, Indels: 5
0.78 0.18 0.03
Matches are distributed among these distances:
49 28 0.24
50 82 0.71
51 4 0.03
52 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.22
Consensus pattern (50 bp):
CACTGAGATAAGAGGTCCCATGTAAGACCATGTCTGGGATATGGCATTGG
Found at i:29465286 original size:33 final size:33
Alignment explanation
Indices: 29465236--29465410 Score: 163
Period size: 33 Copynumber: 5.3 Consensus size: 33
29465226 TGGCAACCAT
* * * **
29465236 AGAGTAAGTTCATTGGGACAGTAAACATAAAGT
1 AGAGTAAGTCCACTGGGACAGTAAACACAAAAC
* * *
29465269 AGGGTAAGTCCGCTGGGATAGTAAACA-AAGAAC
1 AGAGTAAGTCCACTGGGACAGTAAACACAA-AAC
* * * *
29465302 AAAGTAAGTCCGCTAGGATAGTAAACACAAAAC
1 AGAGTAAGTCCACTGGGACAGTAAACACAAAAC
* * *
29465335 AGAGTAAGTCCATTGGGACAATAAACACAAAAT
1 AGAGTAAGTCCACTGGGACAGTAAACACAAAAC
* * *
29465368 AGGGTAAGTCCACTGGGACAGTAAATACAGAAC
1 AGAGTAAGTCCACTGGGACAGTAAACACAAAAC
*
29465401 AGGGTAAGTC
1 AGAGTAAGTC
29465411 TGTCGGGACA
Statistics
Matches: 117, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
32 2 0.02
33 113 0.97
34 2 0.02
ACGTcount: A:0.43, C:0.15, G:0.25, T:0.18
Consensus pattern (33 bp):
AGAGTAAGTCCACTGGGACAGTAAACACAAAAC
Found at i:29474566 original size:50 final size:50
Alignment explanation
Indices: 29474378--29474668 Score: 271
Period size: 50 Copynumber: 5.8 Consensus size: 50
29474368 GATAATAACA
* * ** * * * **
29474378 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGATGTTTCCTGT-AT
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * ** * *
29474427 TGCCAATGCCATATCCCAGATATGGTCTTACGTGGGAGTTCTCATATTGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
29474477 TGCCCATGCCATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTCGG
* * *
29474527 TGCCAATGCCATATCCCAGACATGGTCCTACATGAGACCTCTTATCTCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * * * *
29474577 TGTCAACGCCATGTCCTAAACATGGTCTTACATGGGACCTCTTATCTCGG
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * ** * *
29474627 TGCCAACGCCATGTTGCAGACACGGTCTTACATTGGACCTCT
1 TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCT
29474669 TTACCCAAAT
Statistics
Matches: 201, Mismatches: 38, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
49 39 0.19
50 162 0.81
ACGTcount: A:0.22, C:0.29, G:0.22, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:29485270 original size:82 final size:82
Alignment explanation
Indices: 29485129--29485297 Score: 329
Period size: 82 Copynumber: 2.1 Consensus size: 82
29485119 AGAACGATTC
29485129 TAATGTTACAAACAATGAGTGGCACCTAGCAATGCATCATTCCTACCTAAGTCACAAGAAATCAT
1 TAATGTTACAAACAATGAGTGGCACCTAGCAATGCATCATTCCTACCTAAGTCACAAGAAATCAT
29485194 GATTCGACATAACCTTT
66 GATTCGACATAACCTTT
*
29485211 TAATGTTACAAACAATGAGTGGCACCTAGCAATGCATCATTCCTACCTAAGTCATAAGAAATCAT
1 TAATGTTACAAACAATGAGTGGCACCTAGCAATGCATCATTCCTACCTAAGTCACAAGAAATCAT
29485276 GATTCGACATAACCTTT
66 GATTCGACATAACCTTT
29485293 TAATG
1 TAATG
29485298 ATTAACCTTT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
82 86 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.28
Consensus pattern (82 bp):
TAATGTTACAAACAATGAGTGGCACCTAGCAATGCATCATTCCTACCTAAGTCACAAGAAATCAT
GATTCGACATAACCTTT
Found at i:29506615 original size:51 final size:52
Alignment explanation
Indices: 29506474--29506622 Score: 178
Period size: 51 Copynumber: 2.9 Consensus size: 52
29506464 AAAGTGAAAG
* * *
29506474 TGATGGTCACGTGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATAGC
1 TGATGGTCACGTGTGTAGTACTATGTGCAGGATACTATGTGTACCAGATAGA
* * * *
29506526 T-TTGATCACGTGTGTAGTACTATGTGCA-GACTACTATGTGTATCGGATA-A
1 TGATGGTCACGTGTGTAGTACTATGTGCAGGA-TACTATGTGTACCAGATAGA
* * *
29506576 TGATGGTCACATGTGTAGTACTATGTGCAGGATAGTATGTGAACCAG
1 TGATGGTCACGTGTGTAGTACTATGTGCAGGATACTATGTGTACCAG
29506623 TATCATTAAT
Statistics
Matches: 80, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
50 2 0.03
51 75 0.94
52 3 0.04
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.32
Consensus pattern (52 bp):
TGATGGTCACGTGTGTAGTACTATGTGCAGGATACTATGTGTACCAGATAGA
Found at i:29506699 original size:46 final size:44
Alignment explanation
Indices: 29506623--29506710 Score: 106
Period size: 46 Copynumber: 2.0 Consensus size: 44
29506613 TGTGAACCAG
*
29506623 TATCATTAATTATAAAGTGGTTGCTATGTGCTG-ATCCCACCGGA
1 TATCATTAATTACAAAGTGGTTGCTATGTGCTGAAT-CCACCGGA
* * *
29506667 TATCATTGATTACAAAGGGTGGTTGTTGTGTGCTGAATCCACCG
1 TATCATTAATTACAAA--GTGGTTGCTATGTGCTGAATCCACCG
29506711 TGTATCTGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
44 14 0.38
46 21 0.57
47 2 0.05
ACGTcount: A:0.25, C:0.17, G:0.24, T:0.34
Consensus pattern (44 bp):
TATCATTAATTACAAAGTGGTTGCTATGTGCTGAATCCACCGGA
Found at i:29508884 original size:25 final size:25
Alignment explanation
Indices: 29508850--29508900 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
29508840 TCCGAATAAC
*
29508850 TTAGATGTACCATGTCCAACATCAT
1 TTAGATGTACCATGTCCAACACCAT
29508875 TTAGATGTACCATGTCCAACACCAT
1 TTAGATGTACCATGTCCAACACCAT
29508900 T
1 T
29508901 CAATTCCTTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.31
Consensus pattern (25 bp):
TTAGATGTACCATGTCCAACACCAT
Found at i:29512151 original size:21 final size:22
Alignment explanation
Indices: 29512105--29512152 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
29512095 ATGTCTGGGA
***
29512105 ATGTGTACTAATAGAGGTTGCT
1 ATGTGTACTAATAGAGGCAACT
29512127 ATGTGTACTAATAGA-GCAACT
1 ATGTGTACTAATAGAGGCAACT
29512148 ATGTG
1 ATGTG
29512153 CATGCAGAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.33
Consensus pattern (22 bp):
ATGTGTACTAATAGAGGCAACT
Found at i:29516093 original size:7 final size:7
Alignment explanation
Indices: 29516081--29516122 Score: 57
Period size: 7 Copynumber: 6.0 Consensus size: 7
29516071 TAAATAAGAG
29516081 CTCATCC
1 CTCATCC
29516088 CTCATCC
1 CTCATCC
*
29516095 ATCATCC
1 CTCATCC
*
29516102 ATCATCC
1 CTCATCC
*
29516109 CTCATCT
1 CTCATCC
29516116 CTCATCC
1 CTCATCC
29516123 ACCCTCTCAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.19, C:0.50, G:0.00, T:0.31
Consensus pattern (7 bp):
CTCATCC
Found at i:29516106 original size:21 final size:21
Alignment explanation
Indices: 29516082--29516123 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
29516072 AAATAAGAGC
29516082 TCATCCCTCATC-CATCATCCA
1 TCATCCCTCATCTC-TCATCCA
29516103 TCATCCCTCATCTCTCATCCA
1 TCATCCCTCATCTCTCATCCA
29516124 CCCTCTCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.21, C:0.48, G:0.00, T:0.31
Consensus pattern (21 bp):
TCATCCCTCATCTCTCATCCA
Found at i:29527131 original size:51 final size:50
Alignment explanation
Indices: 29527073--29527257 Score: 221
Period size: 51 Copynumber: 3.7 Consensus size: 50
29527063 CCGGTTTACA
* * *
29527073 TAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCA-TATCATCCGGTACACG
* * * * * *
29527124 TAGTAGCCTGCACATAATACTACACGCGTGATCGA-AGCTATCCGGTACGCA
1 TAGTAGCCTGCACATAGTACTACACACGTGA-CCATATC-ATCCGGTACACG
* *
29527175 TAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACG
1 TAGTAGCCTGCACATAGTACTACACACGTGACCATATCA-TCCGGTACACG
29527225 TAGTAGCCTGCACATAGTACTACACACGTGACC
1 TAGTAGCCTGCACATAGTACTACACACGTGACC
29527258 TAGCAACTTC
Statistics
Matches: 111, Mismatches: 19, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
49 1 0.01
50 44 0.40
51 64 0.58
52 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (50 bp):
TAGTAGCCTGCACATAGTACTACACACGTGACCATATCATCCGGTACACG
Found at i:29527255 original size:101 final size:101
Alignment explanation
Indices: 29527071--29527255 Score: 300
Period size: 101 Copynumber: 1.8 Consensus size: 101
29527061 ACCCGGTTTA
* *
29527071 CATAGTAGCCTGCACATAGTACTACACATGTGACCATTTTCATCCGATACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCA-TATCATCCGATACACGTAGTAGCCTGCA
*
29527136 CATAATACTACACGCGTGATCGAAGCTATCCGGTACG
65 CATAATACTACACACGTGATCGAAGCTATCCGGTACG
*
29527173 CATAGTAGCCTGCACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCCTGCA
1 CATAGTAGCCTGCACATAGTACTACACATGCGACCATATCA-TCCGATACACGTAGTAGCCTGCA
*
29527237 CATAGTACTACACACGTGA
65 CATAATACTACACACGTGA
29527256 CCTAGCAACT
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.51
102 34 0.44
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (101 bp):
CATAGTAGCCTGCACATAGTACTACACATGCGACCATATCATCCGATACACGTAGTAGCCTGCAC
ATAATACTACACACGTGATCGAAGCTATCCGGTACG
Found at i:29530863 original size:16 final size:15
Alignment explanation
Indices: 29530838--29530868 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
29530828 TGATAGATCT
29530838 CTGACGAACTTCCAA
1 CTGACGAACTTCCAA
29530853 CTGATCGAACTTCCAA
1 CTGA-CGAACTTCCAA
29530869 TAATCTGTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.32, C:0.32, G:0.13, T:0.23
Consensus pattern (15 bp):
CTGACGAACTTCCAA
Found at i:29531123 original size:21 final size:21
Alignment explanation
Indices: 29531097--29531138 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
29531087 ACGTAACACT
29531097 TAATTCATCATCATTACCATA
1 TAATTCATCATCATTACCATA
*
29531118 TAATTCATTATCATTACCATA
1 TAATTCATCATCATTACCATA
29531139 CGATCATGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.40
Consensus pattern (21 bp):
TAATTCATCATCATTACCATA
Found at i:29537312 original size:33 final size:33
Alignment explanation
Indices: 29537275--29537365 Score: 110
Period size: 33 Copynumber: 2.8 Consensus size: 33
29537265 TAGAGCAGAT
* * *
29537275 TATCTCTATTCTTTGTTTATTGTCCTAGTGGGC
1 TATCTCTATTCTATGTTTATTGTCCTAGCGGAC
* * * *
29537308 TATCTCTATTATGTGTTTACTGCCCTAGCGGAC
1 TATCTCTATTCTATGTTTATTGTCCTAGCGGAC
*
29537341 TATCTCCATTCTATGTTTATTGTCC
1 TATCTCTATTCTATGTTTATTGTCC
29537366 CAATAGACTA
Statistics
Matches: 47, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.47
Consensus pattern (33 bp):
TATCTCTATTCTATGTTTATTGTCCTAGCGGAC
Found at i:29538955 original size:24 final size:24
Alignment explanation
Indices: 29538926--29538973 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
29538916 ATATCTGCCA
29538926 AAGAATAGCTTAAGGTGGTGAAAG
1 AAGAATAGCTTAAGGTGGTGAAAG
*
29538950 AAGAATGGCTTAAGGTGGTGAAAG
1 AAGAATAGCTTAAGGTGGTGAAAG
29538974 CCCTAGTCTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.35, T:0.21
Consensus pattern (24 bp):
AAGAATAGCTTAAGGTGGTGAAAG
Found at i:29553133 original size:28 final size:27
Alignment explanation
Indices: 29553101--29553153 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
29553091 AAAATAATTA
*
29553101 AAATTAAATATGTTAACAATTTAAGTTT
1 AAATTAAATATGTTAA-AATTAAAGTTT
* *
29553129 AAATTAATTATTTTAAAATTAAAGT
1 AAATTAAATATGTTAAAATTAAAGT
29553154 GTGAATTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 8 0.36
28 14 0.64
ACGTcount: A:0.49, C:0.02, G:0.06, T:0.43
Consensus pattern (27 bp):
AAATTAAATATGTTAAAATTAAAGTTT
Found at i:29553160 original size:27 final size:28
Alignment explanation
Indices: 29553101--29553160 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
29553091 AAAATAATTA
* *
29553101 AAATTAAATATGTTAACAATTTAAGTTT
1 AAATTAAATATGTTAACAATTAAAGTGT
* *
29553129 AAATTAATTATTTTAA-AATTAAAGTGT
1 AAATTAAATATGTTAACAATTAAAGTGT
*
29553156 GAATT
1 AAATT
29553161 TCAACAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 13 0.48
28 14 0.52
ACGTcount: A:0.47, C:0.02, G:0.08, T:0.43
Consensus pattern (28 bp):
AAATTAAATATGTTAACAATTAAAGTGT
Found at i:29557781 original size:26 final size:27
Alignment explanation
Indices: 29557722--29557783 Score: 83
Period size: 27 Copynumber: 2.3 Consensus size: 27
29557712 CCTCATAGGT
29557722 TAAAATGACCGAAATACCCCTATAAGG
1 TAAAATGACCGAAATACCCCTATAAGG
* *
29557749 TAAAATGACCGTAATGCCCCTA-AAGGG
1 TAAAATGACCGAAATACCCCTATAA-GG
29557776 T-AAATGAC
1 TAAAATGAC
29557784 TGATTTGTGC
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
26 9 0.28
27 23 0.72
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.19
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCTATAAGG
Found at i:29559952 original size:22 final size:22
Alignment explanation
Indices: 29559927--29559968 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
29559917 TACCAAGTTG
29559927 ATAAT-AAT-TAA-TATATATT
1 ATAATAAATATAATTATATATT
29559946 ATAATAAATATAATTATATATT
1 ATAATAAATATAATTATATATT
29559968 A
1 A
29559969 GTTGTTATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 5 0.25
20 3 0.15
21 3 0.15
22 9 0.45
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
ATAATAAATATAATTATATATT
Found at i:29559955 original size:16 final size:15
Alignment explanation
Indices: 29559930--29559963 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
29559920 CAAGTTGATA
*
29559930 ATAATTAATATATATT
1 ATAATAAATATA-ATT
29559946 ATAATAAATATAATT
1 ATAATAAATATAATT
29559961 ATA
1 ATA
29559964 TATTAGTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATAATAAATATAATT
Found at i:29564003 original size:13 final size:13
Alignment explanation
Indices: 29563972--29564005 Score: 61
Period size: 12 Copynumber: 2.7 Consensus size: 13
29563962 TTTCTAAGAT
29563972 GGGAAATGAACAA
1 GGGAAATGAACAA
29563985 -GGAAATGAACAA
1 GGGAAATGAACAA
29563997 GGGAAATGA
1 GGGAAATGA
29564006 GAAAACAAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 12 0.60
13 8 0.40
ACGTcount: A:0.53, C:0.06, G:0.32, T:0.09
Consensus pattern (13 bp):
GGGAAATGAACAA
Found at i:29564698 original size:27 final size:28
Alignment explanation
Indices: 29564639--29564692 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
29564629 AAAATAATTA
*
29564639 AAATTAAATATTTTAATAATTTAAGTGC
1 AAATTAAATATTTTAATAATTAAAGTGC
*
29564667 AAATTAATTATTTT-ATAATTAAAGTG
1 AAATTAAATATTTTAATAATTAAAGTG
29564693 TGAATTTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 11 0.46
28 13 0.54
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.44
Consensus pattern (28 bp):
AAATTAAATATTTTAATAATTAAAGTGC
Found at i:29564989 original size:68 final size:67
Alignment explanation
Indices: 29564826--29565114 Score: 305
Period size: 68 Copynumber: 4.2 Consensus size: 67
29564816 AAAGAGGATA
* *
29564826 AGGTTTAAGACCATAGCTCGACTATGGCAACCAATAGAGTCTGATATGG-CA-TAAACTTATAGG
1 AGGTATAAGACCATAGCTCGACTATGGCAACCAATAGAGTCT-ATA-GGACATTAAAC--ATGGG
* *
29564889 GTTGCA
62 GTTACG
* * *
29564895 AGGTATAAGACCATAGCTCGACTATGGCAACTAATAAAGTCTATGAGGATATTAAACATGGGGTT
1 AGGTATAAGACCATAGCTCGACTATGGCAACCAATAGAGTCTAT-AGGACATTAAACATGGGGTT
*
29564960 ATG
65 ACG
* **
29564963 AGGTATAAGACTATAGCTCGACTATGGCAACCAATAGAGTCTGCCAGGACATTAAACATGGGGTT
1 AGGTATAAGACCATAGCTCGACTATGGCAACCAATAGAGTCT-ATAGGACATTAAACATGGGGTT
29565028 ACG
65 ACG
* * * * * * *
29565031 AGGTATAAGACCATAGCTC-AGTTATAGCAACTAATAGAGTCCACCAAGACATTAAACATCGGGT
1 AGGTATAAGACCATAGCTCGA-CTATGGCAACCAATAGAGTCTA-TAGGACATTAAACATGGGGT
*
29565095 TACA
64 TACG
*
29565099 AGGTGTAAGACCATAG
1 AGGTATAAGACCATAG
29565115 ATTTGCTATG
Statistics
Matches: 189, Mismatches: 25, Indels: 13
0.83 0.11 0.06
Matches are distributed among these distances:
67 1 0.01
68 142 0.75
69 41 0.22
70 5 0.03
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (67 bp):
AGGTATAAGACCATAGCTCGACTATGGCAACCAATAGAGTCTATAGGACATTAAACATGGGGTTA
CG
Found at i:29565125 original size:136 final size:136
Alignment explanation
Indices: 29564825--29565114 Score: 352
Period size: 136 Copynumber: 2.1 Consensus size: 136
29564815 GAAAGAGGAT
* *
29564825 AAGGTTTAAGACCATAGCTCGACTATGGCAACCAATAGAGTCTGATATGGCATAAACTTATAGGG
1 AAGGTATAAGACCATAGCTCGACTATGGCAACCAATAGAGTCTGACATGGCATAAAC-TATAGGG
* * * ** * * *
29564890 TTGCAAGGTATAAGACCATAGCTCGACTATGGCAACTAATAAAGTCTATGAGGATATTAAACATG
65 TTACAAGGTATAAGACCATAGCTCGACTATAGCAACTAATAAAGTCCACCAAGACATTAAACATC
*
29564955 GGGTTAT
130 GGGTTAC
* * * *
29564962 GAGGTATAAGACTATAGCTCGACTATGGCAACCAATAGAGTCTGCCA-GGACATTAAAC-ATGGG
1 AAGGTATAAGACCATAGCTCGACTATGGCAACCAATAGAGTCTGACATGG-CA-TAAACTATAGG
* * *
29565025 GTTACGAGGTATAAGACCATAGCTC-AGTTATAGCAACTAATAGAGTCCACCAAGACATTAAACA
64 GTTACAAGGTATAAGACCATAGCTCGA-CTATAGCAACTAATAAAGTCCACCAAGACATTAAACA
29565089 TCGGGTTAC
128 TCGGGTTAC
*
29565098 AAGGTGTAAGACCATAG
1 AAGGTATAAGACCATAG
29565115 ATTTGCTATG
Statistics
Matches: 129, Mismatches: 21, Indels: 7
0.82 0.13 0.04
Matches are distributed among these distances:
135 1 0.01
136 79 0.61
137 44 0.34
138 5 0.04
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.24
Consensus pattern (136 bp):
AAGGTATAAGACCATAGCTCGACTATGGCAACCAATAGAGTCTGACATGGCATAAACTATAGGGT
TACAAGGTATAAGACCATAGCTCGACTATAGCAACTAATAAAGTCCACCAAGACATTAAACATCG
GGTTAC
Found at i:29570391 original size:45 final size:45
Alignment explanation
Indices: 29570341--29570426 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
29570331 TGTTATTATG
* * * *
29570341 AAAATGAGTAAGACCATAGCTGAAAGATGTTATGGCGTCATGATA
1 AAAATGAATAAGACCATAGCTGAAAGACGCTATGGCATCATGATA
*
29570386 AAAATGAATAAGACCATAGGTGAAAGACGCTATGGCATCAT
1 AAAATGAATAAGACCATAGCTGAAAGACGCTATGGCATCAT
29570427 ATGAAAACGC
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.22
Consensus pattern (45 bp):
AAAATGAATAAGACCATAGCTGAAAGACGCTATGGCATCATGATA
Found at i:29576299 original size:265 final size:265
Alignment explanation
Indices: 29575826--29576355 Score: 936
Period size: 265 Copynumber: 2.0 Consensus size: 265
29575816 AACTTTAGTT
*
29575826 TTTGTTATTACAATTTTATAGTTTTAATTGCTAATTTTTTTGTTTCATGATCTCAATAGGTCTAT
1 TTTGTTATTACAATTTTATAGTTTCAATTGCTAATTTTTTTGTTTCATGATCTCAATAGGTCTAT
*
29575891 TACTAGCTGTATGTGTAAAAGAACTCCTGCTGAAGGCCTCTACCCTTTAGATCCAGAAATTGAAA
66 TACTAGCTGTATGCGTAAAAGAACTCCTGCTGAAGGCCTCTACCCTTTAGATCCAGAAATTGAAA
*
29575956 GGACATTGCTAAGAAGGAGAAGAGAACAAAAAGTAATGAATCAAGATGGTAACAATCCACCTACT
131 GGACATTGCTAAGAAGGAGAAGAGAACAAAAAGCAATGAATCAAGATGGTAACAATCCACCTACT
*
29576021 ATGAATGAGCAACTTAATCTAGGCGCTCCGAATGTTAATCCTCTTGTTGCTCAGATGTTTGATGA
196 ATGAATGAGCAACTTAATCTAGGAGCTCCGAATGTTAATCCTCTTGTTGCTCAGATGTTTGATGA
29576086 TCGGG
261 TCGGG
* **
29576091 TTTGTTATTACAATTTTTATAGTTTCAGTTGCTAATTTTTTT-TTTTGTGATCTCAATAGGTCTA
1 TTTGTTATTACAA-TTTTATAGTTTCAATTGCTAATTTTTTTGTTTCATGATCTCAATAGGTCTA
* * * *
29576155 TTACTAGCTGTATGCGTAGAGGAACTCCTGCTGAAGGGCTCTATCCTTTAGATCCAGAAATTGAA
65 TTACTAGCTGTATGCGTAAAAGAACTCCTGCTGAAGGCCTCTACCCTTTAGATCCAGAAATTGAA
29576220 AGGACATTGCTAAGAAGGAGAAGAGAACAAAAAGCAATGAATCAAGATGGTAACAATCCACCTAC
130 AGGACATTGCTAAGAAGGAGAAGAGAACAAAAAGCAATGAATCAAGATGGTAACAATCCACCTAC
*
29576285 TATGAATGAGCAACTTAATCTAGGAGCTTCGAATGTTAATCCTCTTGTTGCTCAGATGTTTGATG
195 TATGAATGAGCAACTTAATCTAGGAGCTCCGAATGTTAATCCTCTTGTTGCTCAGATGTTTGATG
29576350 ATCGGG
260 ATCGGG
29576356 ATAGGCCAAT
Statistics
Matches: 252, Mismatches: 12, Indels: 2
0.95 0.05 0.01
Matches are distributed among these distances:
265 226 0.90
266 26 0.10
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (265 bp):
TTTGTTATTACAATTTTATAGTTTCAATTGCTAATTTTTTTGTTTCATGATCTCAATAGGTCTAT
TACTAGCTGTATGCGTAAAAGAACTCCTGCTGAAGGCCTCTACCCTTTAGATCCAGAAATTGAAA
GGACATTGCTAAGAAGGAGAAGAGAACAAAAAGCAATGAATCAAGATGGTAACAATCCACCTACT
ATGAATGAGCAACTTAATCTAGGAGCTCCGAATGTTAATCCTCTTGTTGCTCAGATGTTTGATGA
TCGGG
Found at i:29586666 original size:19 final size:18
Alignment explanation
Indices: 29586644--29586691 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
29586634 TGAAAATCAT
*
29586644 AAAAATATTAATAATTATA
1 AAAAATATTAA-AAATATA
29586663 AAAAACTA-TAAAAATATA
1 AAAAA-TATTAAAAATATA
29586681 AAAAA-ATTAAA
1 AAAAATATTAAA
29586692 TGAGTAAAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 1 0.04
17 4 0.15
18 11 0.42
19 8 0.31
20 2 0.08
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (18 bp):
AAAAATATTAAAAATATA
Found at i:29587000 original size:11 final size:10
Alignment explanation
Indices: 29586984--29587039 Score: 53
Period size: 10 Copynumber: 5.6 Consensus size: 10
29586974 TTACATTTTA
29586984 AATTTTTATCT
1 AATTTTTAT-T
29586995 AATTTTTATT
1 AATTTTTATT
* *
29587005 AAATTTTATA
1 AATTTTTATT
29587015 AATTTTTA--
1 AATTTTTATT
*
29587023 AATTTTTTTAT
1 AATTTTTAT-T
29587034 AATTTT
1 AATTTT
29587040 GAAGTCATCT
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
8 7 0.18
10 16 0.42
11 15 0.39
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (10 bp):
AATTTTTATT
Found at i:29587011 original size:10 final size:10
Alignment explanation
Indices: 29586981--29587039 Score: 52
Period size: 11 Copynumber: 5.9 Consensus size: 10
29586971 TTTTTACATT
29586981 TTAAATTTTTA
1 TTAAA-TTTTA
*
29586992 TCTAATTTTTA
1 T-TAAATTTTA
29587003 TTAAATTTTA
1 TTAAATTTTA
29587013 -TAAA-TTT-
1 TTAAATTTTA
*
29587020 TTAAATTTTT
1 TTAAATTTTA
29587030 TTATAATTTT
1 TTA-AATTTT
29587040 GAAGTCATCT
Statistics
Matches: 41, Mismatches: 2, Indels: 10
0.77 0.04 0.19
Matches are distributed among these distances:
8 7 0.17
9 7 0.17
10 11 0.27
11 13 0.32
12 3 0.07
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (10 bp):
TTAAATTTTA
Found at i:29587301 original size:18 final size:18
Alignment explanation
Indices: 29587278--29587320 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
29587268 ATTTGAATTA
29587278 ATTTTTTAAAAATATTTT
1 ATTTTTTAAAAATATTTT
* *
29587296 ATTTTTTACATATATTTT
1 ATTTTTTAAAAATATTTT
29587314 ATTTTTT
1 ATTTTTT
29587321 CTGGCGTGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.67
Consensus pattern (18 bp):
ATTTTTTAAAAATATTTT
Found at i:29592667 original size:44 final size:44
Alignment explanation
Indices: 29592618--29592752 Score: 145
Period size: 44 Copynumber: 3.1 Consensus size: 44
29592608 AGAATATGAG
29592618 AAACTTAAACAATACCAAAAATTACAACATGGATCGACTAGCTT
1 AAACTTAAACAATACCAAAAATTACAACATGGATCGACTAGCTT
* ** * ** * *
29592662 AAACTTCAATTAT-TCAATTATT-CAACAATGG-T-AAC-ATCTT
1 AAACTTAAACAATACCAAAAATTACAAC-ATGGATCGACTAGCTT
29592702 CAAACTTAAACAATACCAAAAATTACAACATGGATCGACTAGCTT
1 -AAACTTAAACAATACCAAAAATTACAACATGGATCGACTAGCTT
29592747 AAACTT
1 AAACTT
29592753 CTAAGATTCC
Statistics
Matches: 68, Mismatches: 16, Indels: 14
0.69 0.16 0.14
Matches are distributed among these distances:
40 4 0.06
41 12 0.18
42 15 0.22
43 15 0.22
44 18 0.26
45 4 0.06
ACGTcount: A:0.45, C:0.20, G:0.07, T:0.27
Consensus pattern (44 bp):
AAACTTAAACAATACCAAAAATTACAACATGGATCGACTAGCTT
Found at i:29593013 original size:91 final size:91
Alignment explanation
Indices: 29592858--29593026 Score: 277
Period size: 91 Copynumber: 1.9 Consensus size: 91
29592848 TAGCTTTTTC
* *
29592858 TTGGTTTTCTTCCACTAACTTAATTATATTATTATAGTTATGTTTAGTTTTCTTTATTAATATAA
1 TTGGTTTTCTTCCACTAACTTAATTATATTATTAAAGTTATGTTTAGTTTTCTTTATAAATATAA
*
29592923 TTTATAACATTTTGTTGTTAATTATT
66 TGTATAACATTTTGTTGTTAATTATT
* *
29592949 TTGGTTTTCTTCCACTAACTTTATTTTATTATTAAAGTTATGTTTTA-TTTTCTTTATAAATATA
1 TTGGTTTTCTTCCACTAACTTAATTATATTATTAAAGTTATG-TTTAGTTTTCTTTATAAATATA
29593013 ATGTATAACATTTT
65 ATGTATAACATTTT
29593027 TTTAACAACA
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
91 68 0.94
92 4 0.06
ACGTcount: A:0.28, C:0.08, G:0.07, T:0.57
Consensus pattern (91 bp):
TTGGTTTTCTTCCACTAACTTAATTATATTATTAAAGTTATGTTTAGTTTTCTTTATAAATATAA
TGTATAACATTTTGTTGTTAATTATT
Found at i:29593541 original size:21 final size:21
Alignment explanation
Indices: 29593517--29593556 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
29593507 GTCATGTGAG
*
29593517 TGGGTCACATAGCCTTGTGGA
1 TGGGTCACATAGCCGTGTGGA
*
29593538 TGGGTCACATGGCCGTGTG
1 TGGGTCACATAGCCGTGTG
29593557 AACAAACCGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.20, G:0.38, T:0.28
Consensus pattern (21 bp):
TGGGTCACATAGCCGTGTGGA
Found at i:29594489 original size:12 final size:12
Alignment explanation
Indices: 29594472--29594496 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
29594462 ATGCACAAGT
29594472 TAACATAAATAA
1 TAACATAAATAA
29594484 TAACATAAATAA
1 TAACATAAATAA
29594496 T
1 T
29594497 GAGGTGTAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (12 bp):
TAACATAAATAA
Found at i:29609369 original size:15 final size:16
Alignment explanation
Indices: 29609339--29609377 Score: 53
Period size: 15 Copynumber: 2.4 Consensus size: 16
29609329 TAGTAAAAAT
29609339 ATAATTTTATTATTTTA
1 ATAA-TTTATTATTTTA
*
29609356 ATAATTTA-TATTTTT
1 ATAATTTATTATTTTA
29609371 ATAATTT
1 ATAATTT
29609378 TTAAAATGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 13 0.62
16 4 0.19
17 4 0.19
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (16 bp):
ATAATTTATTATTTTA
Found at i:29609814 original size:22 final size:22
Alignment explanation
Indices: 29609789--29609844 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
29609779 TGTTCAGATG
29609789 ATTATATATAAAATAAT-TAAAT
1 ATTATATA-AAAATAATATAAAT
*
29609811 ATTATATAAAAATAATATACAT
1 ATTATATAAAAATAATATAAAT
*
29609833 ATT-TTTAAAAAT
1 ATTATATAAAAAT
29609845 TTTAAAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
21 16 0.52
22 15 0.48
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
ATTATATAAAAATAATATAAAT
Found at i:29626121 original size:17 final size:17
Alignment explanation
Indices: 29626101--29626184 Score: 60
Period size: 17 Copynumber: 4.9 Consensus size: 17
29626091 TTATGATGGA
29626101 GCATGAACTGTTATTTT
1 GCATGAACTGTTATTTT
* **
29626118 GCATGAATTGTTATTCG
1 GCATGAACTGTTATTTT
* * *
29626135 GTATGAACTGATATTTC
1 GCATGAACTGTTATTTT
** * *
29626152 ATATGAATTATTATTTT
1 GCATGAACTGTTATTTT
* *
29626169 GCATGAGCTGTCATTT
1 GCATGAACTGTTATTT
29626185 GGTAAGAATT
Statistics
Matches: 48, Mismatches: 19, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
17 48 1.00
ACGTcount: A:0.26, C:0.11, G:0.18, T:0.45
Consensus pattern (17 bp):
GCATGAACTGTTATTTT
Found at i:29626201 original size:51 final size:51
Alignment explanation
Indices: 29626111--29626210 Score: 128
Period size: 51 Copynumber: 2.0 Consensus size: 51
29626101 GCATGAACTG
* * * *
29626111 TTATTTTGCATGAATTGTTATTCGGTATGAACTGATATTTCATATGAATTA
1 TTATTTTGCATGAACTGTCATTCGGTAAGAACTGATATTTCAAATGAATTA
* * * *
29626162 TTATTTTGCATGAGCTGTCATTTGGTAAGAATTGTTATTTCAAATGAAT
1 TTATTTTGCATGAACTGTCATTCGGTAAGAACTGATATTTCAAATGAAT
29626211 AGATGTTTGG
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.46
Consensus pattern (51 bp):
TTATTTTGCATGAACTGTCATTCGGTAAGAACTGATATTTCAAATGAATTA
Found at i:29629045 original size:22 final size:22
Alignment explanation
Indices: 29629020--29629068 Score: 98
Period size: 22 Copynumber: 2.2 Consensus size: 22
29629010 TTTATACCCA
29629020 TGTTTGTATTTGTAAAATAAAT
1 TGTTTGTATTTGTAAAATAAAT
29629042 TGTTTGTATTTGTAAAATAAAT
1 TGTTTGTATTTGTAAAATAAAT
29629064 TGTTT
1 TGTTT
29629069 AAGACATTAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.14, T:0.53
Consensus pattern (22 bp):
TGTTTGTATTTGTAAAATAAAT
Found at i:29629494 original size:22 final size:21
Alignment explanation
Indices: 29629449--29629492 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
29629439 AAATATATAT
29629449 AATAATTAAATATTATATAAA
1 AATAATTAAATATTATATAAA
*
29629470 AATAATATAAATATT-TTTAAA
1 AATAAT-TAAATATTATATAAA
29629491 AA
1 AA
29629493 ATTAAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 13 0.62
22 8 0.38
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
AATAATTAAATATTATATAAA
Found at i:29631474 original size:25 final size:27
Alignment explanation
Indices: 29631419--29631484 Score: 77
Period size: 27 Copynumber: 2.5 Consensus size: 27
29631409 CAATATTATT
29631419 TTTAATAATTTTT-TGTTTTCTCATATC
1 TTTAATAATTTTTATGTTTTCTCATA-C
29631446 TTTAATAATTTTTAT-TATTT-TCATA-
1 TTTAATAATTTTTATGT-TTTCTCATAC
*
29631471 TTTAATTATTTTTA
1 TTTAATAATTTTTA
29631485 ACCTCACAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
25 13 0.36
27 19 0.53
28 4 0.11
ACGTcount: A:0.27, C:0.06, G:0.02, T:0.65
Consensus pattern (27 bp):
TTTAATAATTTTTATGTTTTCTCATAC
Found at i:29634002 original size:12 final size:12
Alignment explanation
Indices: 29633982--29634020 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
29633972 CACACAACCG
*
29633982 TGTGGTAGGTCA
1 TGTGGTAGGCCA
*
29633994 TGTGTTAGGCCA
1 TGTGGTAGGCCA
29634006 TGTGGTAGGCCA
1 TGTGGTAGGCCA
29634018 TGT
1 TGT
29634021 AACTCACTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.15, C:0.13, G:0.38, T:0.33
Consensus pattern (12 bp):
TGTGGTAGGCCA
Found at i:29634124 original size:63 final size:63
Alignment explanation
Indices: 29634015--29634160 Score: 177
Period size: 63 Copynumber: 2.3 Consensus size: 63
29634005 ATGTGGTAGG
* * * * * *
29634015 CCATGTAACTCACTATTTTGGAATTAGAGACATATAGGCTAGAGACACAGGCGTCTGTGCAGG
1 CCATGTAACTCACTATTTTGGAATTAGAGACACAGAGGCTACAGACACAAGCGTCTGTCCAGA
* * * *
29634078 TCGTGTAACTCACTATTTTGGAATTAGGGACACACGA-GCTACAGACACAAGCGTGTGTCCAGA
1 CCATGTAACTCACTATTTTGGAATTAGAGACACA-GAGGCTACAGACACAAGCGTCTGTCCAGA
*
29634141 CCATGTAGCTCACTATTTTG
1 CCATGTAACTCACTATTTTG
29634161 AGCCACACTA
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
63 68 0.99
64 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (63 bp):
CCATGTAACTCACTATTTTGGAATTAGAGACACAGAGGCTACAGACACAAGCGTCTGTCCAGA
Found at i:29637461 original size:13 final size:13
Alignment explanation
Indices: 29637423--29637464 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
29637413 AAATAAACAA
29637423 TTAATAGAATCAG
1 TTAATAGAATCAG
*
29637436 TTAATCA-AGTCAG
1 TTAAT-AGAATCAG
29637449 TTAATAGAATCAG
1 TTAATAGAATCAG
29637462 TTA
1 TTA
29637465 GTCAAACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
12 1 0.04
13 23 0.92
14 1 0.04
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (13 bp):
TTAATAGAATCAG
Found at i:29637475 original size:26 final size:26
Alignment explanation
Indices: 29637423--29637475 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
29637413 AAATAAACAA
**
29637423 TTAATAGAATCAGTTAATCAAGTCAG
1 TTAATAGAATCAGTTAATCAAACCAG
*
29637449 TTAATAGAATCAGTTAGTCAAACCAG
1 TTAATAGAATCAGTTAATCAAACCAG
29637475 T
1 T
29637476 CATTGTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.42, C:0.13, G:0.15, T:0.30
Consensus pattern (26 bp):
TTAATAGAATCAGTTAATCAAACCAG
Found at i:29638077 original size:57 final size:57
Alignment explanation
Indices: 29638016--29638135 Score: 204
Period size: 57 Copynumber: 2.1 Consensus size: 57
29638006 GTGTTATGAT
* *
29638016 ACTGATGGTCGACACCCCCTTATCTGATTAAAAAAAGTTTTTTTGGGGTGTTGGGAC
1 ACTGATGGCCGACACCCCCTTATCTGATTAAAAAAAGTTTTTTTGGGGTGCTGGGAC
* *
29638073 ACTGATGGCCGACACCCCTTTATCTGATTAAAAAAGGTTTTTTTGGGGTGCTGGGAC
1 ACTGATGGCCGACACCCCCTTATCTGATTAAAAAAAGTTTTTTTGGGGTGCTGGGAC
29638130 ACTGAT
1 ACTGAT
29638136 AGCTGTCACA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
57 59 1.00
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (57 bp):
ACTGATGGCCGACACCCCCTTATCTGATTAAAAAAAGTTTTTTTGGGGTGCTGGGAC
Found at i:29638302 original size:53 final size:53
Alignment explanation
Indices: 29638191--29638309 Score: 134
Period size: 53 Copynumber: 2.2 Consensus size: 53
29638181 CAGTGATGGT
* **
29638191 CGACACCTTTTTTCCAGAATTAAAAAAAATTAGGGTGTTGGAACACTGATAAC
1 CGACACCCTTTTTCCAGAATTAAAAAAAATTAGGGTGTAAGAACACTGATAAC
* * * * *
29638244 TGACACCCCTTTTCCA-AATTAAAAAAAAATTGGGGTGCTAAG-ACATTGATGAC
1 CGACACCCTTTTTCCAGAATT-AAAAAAAATTAGGGTG-TAAGAACACTGATAAC
29638297 CGACACCCTTTTT
1 CGACACCCTTTTT
29638310 ATTAGTTCAA
Statistics
Matches: 54, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
52 4 0.07
53 48 0.89
54 2 0.04
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.29
Consensus pattern (53 bp):
CGACACCCTTTTTCCAGAATTAAAAAAAATTAGGGTGTAAGAACACTGATAAC
Found at i:29640636 original size:76 final size:76
Alignment explanation
Indices: 29640473--29640636 Score: 176
Period size: 76 Copynumber: 2.1 Consensus size: 76
29640463 TTTAAAATCG
* * * * * *
29640473 TTTTCAGAATGTATCACTTTGTAATTTTTTAAACTATTGATTTGAAATTTTTCAGTTGTCATTTT
1 TTTTCA-AATTTATCACTCTGTAATTCTTTAAAATATTGATTTCAAATTTTTCAGTTGTCATTTA
*
29640538 TTTTTAAAAAGA
65 TTTTGAAAAAGA
29640550 -TTTCTAAATTTATCACTCTGTAATTCTTTAAAATATTGA-TTCAAATTTTTTCAGTTTGT-A-T
1 TTTTC-AAATTTATCACTCTGTAATTCTTTAAAATATTGATTTCAAA-TTTTTCAG-TTGTCATT
29640611 TATTTTG-AAAAGAA
63 TATTTTGAAAAAG-A
29640625 TTTTCACAATTT
1 TTTTCA-AATTT
29640637 TCCAGTTATT
Statistics
Matches: 74, Mismatches: 7, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
74 5 0.07
75 13 0.18
76 51 0.69
77 5 0.07
ACGTcount: A:0.31, C:0.09, G:0.09, T:0.51
Consensus pattern (76 bp):
TTTTCAAATTTATCACTCTGTAATTCTTTAAAATATTGATTTCAAATTTTTCAGTTGTCATTTAT
TTTGAAAAAGA
Found at i:29642396 original size:19 final size:19
Alignment explanation
Indices: 29642372--29642409 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
29642362 ATCTAAAGTT
29642372 TTATTTAATTTAC-ATTTTA
1 TTATTT-ATTTACTATTTTA
29642391 TTATTTATTTACTATTTTA
1 TTATTTATTTACTATTTTA
29642410 CCCTTAGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 6 0.33
19 12 0.67
ACGTcount: A:0.29, C:0.05, G:0.00, T:0.66
Consensus pattern (19 bp):
TTATTTATTTACTATTTTA
Found at i:29644993 original size:65 final size:64
Alignment explanation
Indices: 29644890--29645020 Score: 253
Period size: 65 Copynumber: 2.0 Consensus size: 64
29644880 TTTAACTTAT
29644890 TCGTGTTGTATATTAAAAAAAGTAAAAGAGGAAAATGAAACCGACGAAATAAAAGAAATCGAAA
1 TCGTGTTGTATATTAAAAAAAGTAAAAGAGGAAAATGAAACCGACGAAATAAAAGAAATCGAAA
29644954 TCGTGTTGTATATTAAAAAAAAGTAAAAGAGGAAAATGAAACCGACGAAATAAAAGAAATCGAAA
1 TCGTGTTGTATATT-AAAAAAAGTAAAAGAGGAAAATGAAACCGACGAAATAAAAGAAATCGAAA
29645019 TC
1 TC
29645021 TACCTTTAAT
Statistics
Matches: 66, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
64 14 0.21
65 52 0.79
ACGTcount: A:0.54, C:0.08, G:0.18, T:0.19
Consensus pattern (64 bp):
TCGTGTTGTATATTAAAAAAAGTAAAAGAGGAAAATGAAACCGACGAAATAAAAGAAATCGAAA
Found at i:29646319 original size:131 final size:131
Alignment explanation
Indices: 29645908--29646349 Score: 593
Period size: 131 Copynumber: 3.4 Consensus size: 131
29645898 TTTTGATCCG
* * * * *
29645908 CTCCACTGC-AACTTCAGGGAAATAGGATTAGTGGCTTAAATCTGTTTGCTTACTACCTGGGGAA
1 CTCCACTGCTAAC--CAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACT-CCTGGGGAA
* * *
29645972 GATAAGATTCGTCGTCTTCGATTTGCTCCACTACTGCTTAGGGAGATAAGATCCGTAATTTTCAA
63 GATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAA
29646037 CCTA
128 CCTA
* * *
29646041 TTCCACTGCTAACCAGGGAGATAGGACTAGTGGCTTAAATCTACTTTCCTACTCCTGGGGAAGAT
1 CTCCACTGCTAACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGAT
* * * *
29646106 AAGATTCGCCGTCTTCGATCTGCTTCATTACTGCTTAGAGAGATAAGATCTGTAATTTCCAACCT
66 AAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCT
29646171 A
131 A
*
29646172 CTCCACTGCTGACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGAT
1 CTCCACTGCTAACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGAT
* *
29646237 AAGATTCACCGTCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCT
66 AAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCT
*
29646302 G
131 A
** * * * *
29646303 CTCTGCTGC-AATCCAGGAAGGCTA-GACTAGTGTCTTTAATCTGCTTC
1 CTCCACTGCTAA-CCAGGGA-GATAGGACTAGTGGCTTAAATCTGCTTC
29646350 ACTGTTAGTA
Statistics
Matches: 274, Mismatches: 32, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
130 1 0.00
131 225 0.82
132 37 0.14
133 8 0.03
134 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (131 bp):
CTCCACTGCTAACCAGGGAGATAGGACTAGTGGCTTAAATCTGCTTCCCTACTCCTGGGGAAGAT
AAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCT
A
Found at i:29646367 original size:44 final size:44
Alignment explanation
Indices: 29646317--29646515 Score: 129
Period size: 45 Copynumber: 4.5 Consensus size: 44
29646307 GCTGCAATCC
*
29646317 AGGAAGGCTAGACTAGTGTCTTTAATCTGCTTCACTGTTAGTAT
1 AGGAAGGCAAGACTAGTGTCTTTAATCTGCTTCACTGTTAGTAT
** * * * ** **
29646361 AGGAAGGCAAGATCTCCTATCTTTAACCTG-TTCCGCTGCAACCCA-
1 AGGAAGGCAAGA-CTAGTGTCTTTAATCTGCTT-CACTGTTA-GTAT
* *
29646406 AGG-AGGCAAGGCTAGTGTCTTCAATCTGCTTCACTGTTAGTAT
1 AGGAAGGCAAGACTAGTGTCTTTAATCTGCTTCACTGTTAGTAT
* * * * * * *
29646449 AGGAAAGCAAGATCT-GCTATCTTCAGTCTGCTCCGCTGTCAGT-T
1 AGGAAGGCAAGA-CTAG-TGTCTTTAATCTGCTTCACTGTTAGTAT
*
29646493 GATGAAGGCAAGACTAGTGTCTT
1 -AGGAAGGCAAGACTAGTGTCTT
29646516 CGATTTGCTT
Statistics
Matches: 114, Mismatches: 31, Indels: 20
0.69 0.19 0.12
Matches are distributed among these distances:
42 1 0.01
43 20 0.18
44 37 0.32
45 55 0.48
46 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (44 bp):
AGGAAGGCAAGACTAGTGTCTTTAATCTGCTTCACTGTTAGTAT
Found at i:29646504 original size:45 final size:45
Alignment explanation
Indices: 29646455--29646576 Score: 106
Period size: 44 Copynumber: 2.7 Consensus size: 45
29646445 GTATAGGAAA
** **
29646455 GCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAGTTGATGAAG
1 GCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAGTACAAAAAG
* * *
29646500 GCAAGA-CTAG-TGTCTTC-GATTTGCTTCGCTGTCAGTACAAAAAG
1 GCAAGATCT-GCTATCTTCAG-TCTGCTCCGCTGTCAGTACAAAAAG
* ** *
29646544 GCAAGATCTGCCATCTTCAACCTGCTCCACTGT
1 GCAAGATCTGCTATCTTCAGTCTGCTCCGCTGT
29646577 AACCTAGGGA
Statistics
Matches: 58, Mismatches: 14, Indels: 10
0.71 0.17 0.12
Matches are distributed among these distances:
43 1 0.02
44 34 0.59
45 23 0.40
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (45 bp):
GCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAGTACAAAAAG
Found at i:29646638 original size:177 final size:177
Alignment explanation
Indices: 29646319--29646663 Score: 431
Period size: 177 Copynumber: 1.9 Consensus size: 177
29646309 TGCAATCCAG
* * * * **
29646319 GAAGGCTAGACTAGTGTCTTTAATCTGCTTCACTGTTAGTATAGGAAGGCAAGATCTCCTATCTT
1 GAAGGCAAGACTAGTGTCTTCAATCTGCTTCACTGTCAGTACAAAAAGGCAAGATCTCCTATCTT
* * * * * *
29646384 TAACCTGTTCCGCTGCAACCCAAGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTGTTAGTAT
66 CAACCTGCTCCACTGCAACCCAAGGAGGCAAGGCTAGTGTCTTCAATCTACTTCACTGTCAGTAC
** **
29646449 AGGAAAGCAAGATCTGCTATCTTCAGTCTGCTCCGCTGTCAGTTGAT
131 AGGAAAGCAAGATCCACTATCTTCAACCTGCTCCGCTGTCAGTTGAT
* * *
29646496 GAAGGCAAGACTAGTGTCTTCGATTTGCTTCGCTGTCAGTACAAAAAGGCAAGATCTGCC-ATCT
1 GAAGGCAAGACTAGTGTCTTCAATCTGCTTCACTGTCAGTACAAAAAGGCAAGATCT-CCTATCT
* * * * * * *
29646560 TCAACCTGCTCCACTGTAACCTAGGGAGGCAAGGCTAGTGTCTTCGATCTACTTCGCTGTCGGTG
65 TCAACCTGCTCCACTGCAACCCAAGGAGGCAAGGCTAGTGTCTTCAATCTACTTCACTGTCAGTA
*
29646625 CAGGAAGGCAAGATCCACTATCTTCAACCTGCTCCGCTG
130 CAGGAAAGCAAGATCCACTATCTTCAACCTGCTCCGCTG
29646664 CAACCCGGGG
Statistics
Matches: 140, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
177 138 0.99
178 2 0.01
ACGTcount: A:0.24, C:0.25, G:0.23, T:0.28
Consensus pattern (177 bp):
GAAGGCAAGACTAGTGTCTTCAATCTGCTTCACTGTCAGTACAAAAAGGCAAGATCTCCTATCTT
CAACCTGCTCCACTGCAACCCAAGGAGGCAAGGCTAGTGTCTTCAATCTACTTCACTGTCAGTAC
AGGAAAGCAAGATCCACTATCTTCAACCTGCTCCGCTGTCAGTTGAT
Found at i:29646675 original size:88 final size:88
Alignment explanation
Indices: 29646294--29646700 Score: 393
Period size: 88 Copynumber: 4.6 Consensus size: 88
29646284 ATCTGTAATT
* * * * * ** *
29646294 TTCAACCTGCTCTGCTGCAATCCAGGAAGGCTAGACTAGTGTCTTTAATCTGCTTCACTGTTAGT
1 TTCAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCACTGTCAGT
*
29646359 ATAGGAAGGCAAGATCTC-CTATC
66 ACAGGAAGGCAAGATC-CGCTATC
* * * * *
29646382 TTTAACCTGTTCCGCTGCAACCCAAGGAGGCAAGGCTAGTGTCTTCAATCTGCTTCACTGTTAGT
1 TTCAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCACTGTCAGT
* * *
29646447 ATAGGAAAGCAAGATCTGCTATC
66 ACAGGAAGGCAAGATCCGCTATC
** **** * * * * *
29646470 TTCAGTCTGCTCCGCTGTCAGTTGATGAAGGCAAGACTAGTGTCTTCGATTTGCTTCGCTGTCAG
1 TTCAACCTGCTCCGCTG-CAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCACTGTCAG
** * *
29646535 TACAAAAAGGCAAGATCTGCCATC
65 TACAGGAAGGCAAGATCCGCTATC
* * * * * *
29646559 TTCAACCTGCTCCACTGTAACCTAGGGAGGCAAGGCTAGTGTCTTCGATCTACTTCGCTGTCGGT
1 TTCAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCACTGTCAGT
* *
29646624 GCAGGAAGGCAAGATCCACTATC
66 ACAGGAAGGCAAGATCCGCTATC
* * * *
29646647 TTCAACCTGCTCCGCTGCAACCCGGGGAGGTAAGGTTGGTGTCTTCGATCTGCT
1 TTCAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCT
29646701 ATTTTCAACC
Statistics
Matches: 258, Mismatches: 59, Indels: 4
0.80 0.18 0.01
Matches are distributed among these distances:
88 189 0.73
89 69 0.27
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (88 bp):
TTCAACCTGCTCCGCTGCAACCCAGGGAGGCAAGGCTAGTGTCTTCGATCTGCTTCACTGTCAGT
ACAGGAAGGCAAGATCCGCTATC
Found at i:29646744 original size:57 final size:57
Alignment explanation
Indices: 29646642--29646757 Score: 178
Period size: 57 Copynumber: 2.0 Consensus size: 57
29646632 GCAAGATCCA
* * * * *
29646642 CTATCTTCAACCTGCTCCGCTGCAACCCGGGGAGGTAAGGTTGGTGTCTTCGATCTG
1 CTATCTTCAACCTGCTCCGCTGCAACACAGGGAAGCAAGGCTGGTGTCTTCGATCTG
*
29646699 CTATTTTCAACCTGCTCCGCTGCAACACAGGGAAGCAAGGCTGGTGTCTTCGATCTG
1 CTATCTTCAACCTGCTCCGCTGCAACACAGGGAAGCAAGGCTGGTGTCTTCGATCTG
29646756 CT
1 CT
29646758 TCGCTGTCGG
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
57 53 1.00
ACGTcount: A:0.18, C:0.28, G:0.26, T:0.28
Consensus pattern (57 bp):
CTATCTTCAACCTGCTCCGCTGCAACACAGGGAAGCAAGGCTGGTGTCTTCGATCTG
Found at i:29646811 original size:145 final size:145
Alignment explanation
Indices: 29646548--29646845 Score: 438
Period size: 145 Copynumber: 2.1 Consensus size: 145
29646538 AAAAAGGCAA
* * *
29646548 GATCTGCCATCTTCAACCTGCTCCACTGTAACCTAGGGAGGCAAGGCTAGTGTCTTCGATCTACT
1 GATCTGCTATCTTCAACCTGCTCCACTGCAACCTAGGGAAGCAAGGCTAGTGTCTTCGATCTACT
*
29646613 TCGCTGTCGGTGCAGGAAGGCAAGATCCACTATCTTCAACCTGCTCCGCTGCAACCCG-GGGAGG
66 TCGCTGTCGGTGCAGGAAGGCAAGATCCACTATCTTCAACCTGCTCCACTGCAA-CCGAGGGAGG
* *
29646677 TAAGGTTGGTGTCTTC
130 CAAGGCTGGTGTCTTC
* * * *
29646693 GATCTGCTATTTTCAACCTGCTCCGCTGCAACAC-AGGGAAGCAAGGCTGGTGTCTTCGATCTGC
1 GATCTGCTATCTTCAACCTGCTCCACTGCAAC-CTAGGGAAGCAAGGCTAGTGTCTTCGATCTAC
** *
29646757 TTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCACTGCAACCGAGGGAGG
65 TTCGCTGTCGGTGCAGGAAGGCAAGATCCACTATCTTCAACCTGCTCCACTGCAACCGAGGGAGG
29646822 CAAGGCTGGTGTCTTC
130 CAAGGCTGGTGTCTTC
*
29646838 AATCTGCT
1 GATCTGCT
29646846 TCACTGTCGG
Statistics
Matches: 137, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
144 3 0.02
145 133 0.97
146 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.26
Consensus pattern (145 bp):
GATCTGCTATCTTCAACCTGCTCCACTGCAACCTAGGGAAGCAAGGCTAGTGTCTTCGATCTACT
TCGCTGTCGGTGCAGGAAGGCAAGATCCACTATCTTCAACCTGCTCCACTGCAACCGAGGGAGGC
AAGGCTGGTGTCTTC
Found at i:29646843 original size:88 final size:88
Alignment explanation
Indices: 29646693--29646883 Score: 303
Period size: 88 Copynumber: 2.2 Consensus size: 88
29646683 TGGTGTCTTC
* *
29646693 GATCTGCTATTTTCAACCTGCTCCGCTGCAACACAGGGAAGCAAGGCTGGTGTCTTCGATCTGCT
1 GATCTGCTATTTTCAACCTGCTCCACTGCAACACAGGGAAGCAAGGCTGGTGTCTTCAATCTGCT
*
29646758 TCGCTGTCGGTGCAGGAAGGCAA
66 TCACTGTCGGTGCAGGAAGGCAA
*
29646781 GATCTGCTATTTTCAACCTGCTCCACTGCAAC-CGAGGGAGGCAAGGCTGGTGTCTTCAATCTGC
1 GATCTGCTATTTTCAACCTGCTCCACTGCAACAC-AGGGAAGCAAGGCTGGTGTCTTCAATCTGC
* *
29646845 TTCACTGTCGGTGTAGGAAGGGAA
65 TTCACTGTCGGTGCAGGAAGGCAA
*
29646869 GATCTGCTATCTTCA
1 GATCTGCTATTTTCA
29646884 CTTATCTATT
Statistics
Matches: 95, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
87 1 0.01
88 94 0.99
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.27
Consensus pattern (88 bp):
GATCTGCTATTTTCAACCTGCTCCACTGCAACACAGGGAAGCAAGGCTGGTGTCTTCAATCTGCT
TCACTGTCGGTGCAGGAAGGCAA
Found at i:29646845 original size:43 final size:43
Alignment explanation
Indices: 29646704--29646851 Score: 102
Period size: 43 Copynumber: 3.4 Consensus size: 43
29646694 ATCTGCTATT
* *
29646704 TTCAACCTGCTCCGCTGCAACAC-AGGGAAGCAAGGCTGGTGTC
1 TTCAACCTGCTCCACTGCAAC-CGAGGGAGGCAAGGCTGGTGTC
* * * * *** * * * * *
29646747 TTCGATCTGCTTCGCTGTC-GGTGCAGGAAGGCAAGATCTGCTATT
1 TTCAACCTGCTCCACTG-CAACCG-AGGGAGGCAAG-GCTGGTGTC
29646792 TTCAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTGGTGTC
1 TTCAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTGGTGTC
* *
29646835 TTCAATCTGCTTCACTG
1 TTCAACCTGCTCCACTG
29646852 TCGGTGTAGG
Statistics
Matches: 74, Mismatches: 26, Indels: 10
0.67 0.24 0.09
Matches are distributed among these distances:
43 34 0.46
44 21 0.28
45 19 0.26
ACGTcount: A:0.20, C:0.28, G:0.27, T:0.25
Consensus pattern (43 bp):
TTCAACCTGCTCCACTGCAACCGAGGGAGGCAAGGCTGGTGTC
Found at i:29653494 original size:8 final size:8
Alignment explanation
Indices: 29653479--29653516 Score: 69
Period size: 8 Copynumber: 4.9 Consensus size: 8
29653469 TATGCCAATA
29653479 TAAT-AAT
1 TAATAAAT
29653486 TAATAAAT
1 TAATAAAT
29653494 TAATAAAT
1 TAATAAAT
29653502 TAATAAAT
1 TAATAAAT
29653510 TAATAAA
1 TAATAAA
29653517 AAAATAAATG
Statistics
Matches: 30, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
7 4 0.13
8 26 0.87
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
TAATAAAT
Found at i:29653522 original size:16 final size:16
Alignment explanation
Indices: 29653487--29653534 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
29653477 TATAATAATT
**
29653487 AATAAATTAATAAATT
1 AATAAATTAATAAAAA
29653503 AATAAATTAATAAAAA
1 AATAAATTAATAAAAA
29653519 AATAAATGTAA-AAAAA
1 AATAAAT-TAATAAAAA
29653535 GAAGGGATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
16 26 0.90
17 3 0.10
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (16 bp):
AATAAATTAATAAAAA
Found at i:29657225 original size:22 final size:23
Alignment explanation
Indices: 29657190--29657254 Score: 66
Period size: 22 Copynumber: 3.0 Consensus size: 23
29657180 AAAAACTATC
* *
29657190 TACAAATTAAATCTCTAAGATTA
1 TACAAATCATATCTCTAAGATTA
29657213 TA-AAATCATATCTTCTAAGA--A
1 TACAAATCATATC-TCTAAGATTA
*
29657234 TACATATCATATCT-TAAGATT
1 TACAAATCATATCTCTAAGATT
29657255 GAATATCTTC
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
20 5 0.14
21 4 0.11
22 17 0.49
23 9 0.26
ACGTcount: A:0.45, C:0.14, G:0.05, T:0.37
Consensus pattern (23 bp):
TACAAATCATATCTCTAAGATTA
Found at i:29658693 original size:30 final size:28
Alignment explanation
Indices: 29658654--29658711 Score: 80
Period size: 30 Copynumber: 2.0 Consensus size: 28
29658644 ATTATTAAAT
29658654 TATTAAATTTTAATAAAAAAATATAAGAAA
1 TATTAAATTTTAATAAAAAAA-AT-AGAAA
* *
29658684 TATTTAATTTTTATAAAAAAAATAGAAA
1 TATTAAATTTTAATAAAAAAAATAGAAA
29658712 AGGATTATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 5 0.19
29 2 0.08
30 19 0.73
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.36
Consensus pattern (28 bp):
TATTAAATTTTAATAAAAAAAATAGAAA
Found at i:29659067 original size:18 final size:20
Alignment explanation
Indices: 29659025--29659062 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
29659015 TTTTTGATGC
*
29659025 ATTTTATAATTTATATATAT
1 ATTTTACAATTTATATATAT
29659045 ATTTTACAATTTATATAT
1 ATTTTACAATTTATATAT
29659063 TTTTTCTTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (20 bp):
ATTTTACAATTTATATATAT
Found at i:29659107 original size:28 final size:29
Alignment explanation
Indices: 29659073--29659138 Score: 100
Period size: 28 Copynumber: 2.3 Consensus size: 29
29659063 TTTTTCTTTC
29659073 TAATTTTTAGTAAATTTTAA-ATATTTTTA
1 TAATTTTTAGTAAATTTTAATAT-TTTTTA
*
29659102 T-ATTTTTATTAAATTTTAATATTTTTTA
1 TAATTTTTAGTAAATTTTAATATTTTTTA
29659130 TAATTTTTA
1 TAATTTTTA
29659139 TTGATTTTTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
28 24 0.71
29 10 0.29
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.64
Consensus pattern (29 bp):
TAATTTTTAGTAAATTTTAATATTTTTTA
Found at i:29659117 original size:19 final size:18
Alignment explanation
Indices: 29659026--29659150 Score: 63
Period size: 20 Copynumber: 6.3 Consensus size: 18
29659016 TTTTGATGCA
*
29659026 TTTTATAATTTATATATATA
1 TTTTATAATTT-T-TATATT
* *
29659046 TTTTACAATTTATATATTTTT
1 TTTTATAATTT-T-TA-TATT
* **
29659067 TCTTTCTAATTTTTAGTAAA
1 T-TTTATAATTTTTA-TATT
*
29659087 TTTTAAATATTTTTATA-T
1 TTTTATA-ATTTTTATATT
*
29659105 TTTTATTAAATTTTAATATT
1 TTTTA-T-AATTTTTATATT
29659125 TTTTATAATTTTTATTGATT
1 TTTTATAATTTTTA-T-ATT
29659145 TTTTAT
1 TTTTAT
29659151 TTTTATTTGA
Statistics
Matches: 82, Mismatches: 15, Indels: 16
0.73 0.13 0.14
Matches are distributed among these distances:
18 12 0.15
19 16 0.20
20 42 0.51
21 4 0.05
22 8 0.10
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (18 bp):
TTTTATAATTTTTATATT
Found at i:29659129 original size:20 final size:20
Alignment explanation
Indices: 29659095--29659151 Score: 64
Period size: 19 Copynumber: 2.9 Consensus size: 20
29659085 AATTTTAAAT
*
29659095 ATTTTTATA-TTTTTATTAA
1 ATTTTAATATTTTTTATTAA
29659114 ATTTTAATATTTTTTA-TAA
1 ATTTTAATATTTTTTATTAA
* *
29659133 TTTTTATTGATTTTTTATT
1 ATTTTAAT-ATTTTTTATT
29659152 TTTATTTGAT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 17 0.53
20 14 0.44
21 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (20 bp):
ATTTTAATATTTTTTATTAA
Found at i:29660214 original size:2 final size:2
Alignment explanation
Indices: 29660207--29660236 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
29660197 ATACCTTTTC
29660207 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29660237 TGCTTTGGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:29666618 original size:12 final size:12
Alignment explanation
Indices: 29666601--29666629 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
29666591 ACTCAGGGTC
29666601 GGACACGGGCTG
1 GGACACGGGCTG
29666613 GGACACGGGCTG
1 GGACACGGGCTG
29666625 GGACA
1 GGACA
29666630 TCCTATTTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.21, C:0.24, G:0.48, T:0.07
Consensus pattern (12 bp):
GGACACGGGCTG
Found at i:29675799 original size:25 final size:25
Alignment explanation
Indices: 29675771--29675818 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
29675761 ATGCGGAAGT
29675771 GGATCGTAAAGTTAGCAAAAGTCGC
1 GGATCGTAAAGTTAGCAAAAGTCGC
* *
29675796 GGATCGTAAAGTTTGCCAAAGTC
1 GGATCGTAAAGTTAGCAAAAGTC
29675819 ACAGATTTGA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.33, C:0.17, G:0.27, T:0.23
Consensus pattern (25 bp):
GGATCGTAAAGTTAGCAAAAGTCGC
Found at i:29678591 original size:20 final size:20
Alignment explanation
Indices: 29678566--29678605 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
29678556 ATGAAAGCTT
29678566 GAAAAGAACACGCCACTCAA
1 GAAAAGAACACGCCACTCAA
29678586 GAAAAGAACACGCCACTCAA
1 GAAAAGAACACGCCACTCAA
29678606 ATTCTCAATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.50, C:0.30, G:0.15, T:0.05
Consensus pattern (20 bp):
GAAAAGAACACGCCACTCAA
Found at i:29679460 original size:14 final size:15
Alignment explanation
Indices: 29679438--29679476 Score: 62
Period size: 14 Copynumber: 2.7 Consensus size: 15
29679428 TTCAAGTCAG
29679438 ATAAAATAATTAAAA
1 ATAAAATAATTAAAA
*
29679453 AT-AAATAACTAAAA
1 ATAAAATAATTAAAA
29679467 ATAAAATAAT
1 ATAAAATAAT
29679477 AAACCAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
14 13 0.62
15 8 0.38
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
ATAAAATAATTAAAA
Found at i:29681187 original size:50 final size:51
Alignment explanation
Indices: 29681112--29681283 Score: 206
Period size: 50 Copynumber: 3.4 Consensus size: 51
29681102 CATTTGGGTA
* * *
29681112 AAGAGATCCCATGTAAGACCATGTCTGGGACATGGTGTTGGCATCGAGAT-
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
*
29681162 AAGAGGTCCCATGTAAGACCTTGTCTGGGACATGGCGTTGGCACCGAGATG
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
** * * * * *
29681213 AA-AGGTCCCCCGTAAGACCATGTCTGGGAGATGGCATGGGCACTGATATG
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
**
29681263 -AGAACTCCCATGTAAGACCAT
1 AAGAGGTCCCATGTAAGACCAT
29681284 ATTTGGGATA
Statistics
Matches: 104, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
49 1 0.01
50 101 0.97
51 2 0.02
ACGTcount: A:0.27, C:0.22, G:0.30, T:0.22
Consensus pattern (51 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
Found at i:29681304 original size:100 final size:100
Alignment explanation
Indices: 29681124--29681304 Score: 211
Period size: 100 Copynumber: 1.8 Consensus size: 100
29681114 GAGATCCCAT
** * ** * *
29681124 GTAAGACCATGTCTGGGACATGGTGTTGGCATCGAGATAAGAGGTCCCATGTAAGACCTTGTCTG
1 GTAAGACCATGTCTGGGACATGGCATGGGCATCGAGATAAGAACTCCCATGTAAGACCATATCTG
**
29681189 GGACATGGCGTTGGCACCGAGATGAAAGGTCCCCC
66 GGACATGGCACTGGCACCGAGATGAAAGGTCCCCC
* * * *
29681224 GTAAGACCATGTCTGGGAGATGGCATGGGCA-CTGATATGAGAACTCCCATGTAAGACCATATTT
1 GTAAGACCATGTCTGGGACATGGCATGGGCATC-GAGATAAGAACTCCCATGTAAGACCATATCT
* *
29681288 GGGATATGTCACTGGCA
65 GGGACATGGCACTGGCA
29681305 GTACAAGAAA
Statistics
Matches: 65, Mismatches: 15, Indels: 2
0.79 0.18 0.02
Matches are distributed among these distances:
99 1 0.02
100 64 0.98
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.23
Consensus pattern (100 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCATCGAGATAAGAACTCCCATGTAAGACCATATCTG
GGACATGGCACTGGCACCGAGATGAAAGGTCCCCC
Found at i:29685162 original size:26 final size:26
Alignment explanation
Indices: 29685126--29685176 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
29685116 ACAACAAAAA
*
29685126 ATGCTCGCACTCTTTCCCTGTTTTTC
1 ATGCTCACACTCTTTCCCTGTTTTTC
29685152 ATGCTCACACTCTTTCCCTGTTTTT
1 ATGCTCACACTCTTTCCCTGTTTTT
29685177 ATTTTCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.10, C:0.33, G:0.10, T:0.47
Consensus pattern (26 bp):
ATGCTCACACTCTTTCCCTGTTTTTC
Found at i:29685999 original size:30 final size:30
Alignment explanation
Indices: 29685964--29686021 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
29685954 AAAGGAAAAT
29685964 TGAACTAACTTATGCTTAACAACTTGCTAA
1 TGAACTAACTTATGCTTAACAACTTGCTAA
29685994 TGAACTAACTTATGCTTAACAACTTGCT
1 TGAACTAACTTATGCTTAACAACTTGCT
29686022 TTTAGCGATA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.34, C:0.21, G:0.10, T:0.34
Consensus pattern (30 bp):
TGAACTAACTTATGCTTAACAACTTGCTAA
Found at i:29687936 original size:3 final size:3
Alignment explanation
Indices: 29687930--29687955 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
29687920 CTTAATAATC
29687930 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
29687956 GAATAAGGTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:29688055 original size:17 final size:17
Alignment explanation
Indices: 29688033--29688065 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
29688023 TAATCTTATT
29688033 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
29688050 AAATATAATTTAATAA
1 AAATATAATTTAATAA
29688066 CATTCTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:29688291 original size:17 final size:17
Alignment explanation
Indices: 29688271--29688303 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
29688261 ATTAAGAATG
29688271 TTATTAAATTATATTTT
1 TTATTAAATTATATTTT
29688288 TTATTAAATTATATTT
1 TTATTAAATTATATTT
29688304 AATAATAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (17 bp):
TTATTAAATTATATTTT
Found at i:29690577 original size:18 final size:18
Alignment explanation
Indices: 29690546--29690595 Score: 64
Period size: 18 Copynumber: 2.7 Consensus size: 18
29690536 TTTTTACTTG
* *
29690546 TTTTTCCTTCTCTTTTTTA
1 TTTTT-CTTTTCTTTTTCA
*
29690565 TTTTTCTTTTCTTTTTCG
1 TTTTTCTTTTCTTTTTCA
29690583 TTTTTCTTTTCTT
1 TTTTTCTTTTCTT
29690596 AAGAATATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
18 23 0.82
19 5 0.18
ACGTcount: A:0.02, C:0.18, G:0.02, T:0.78
Consensus pattern (18 bp):
TTTTTCTTTTCTTTTTCA
Found at i:29693026 original size:33 final size:33
Alignment explanation
Indices: 29692980--29693066 Score: 111
Period size: 33 Copynumber: 2.6 Consensus size: 33
29692970 GAAAATCCTT
*
29692980 TATTTACTTTTGGAAATCAAGAGTTTACCATTG
1 TATTTACTGTTGGAAATCAAGAGTTTACCATTG
* * **
29693013 TATTTGCTGTTGGAAATCAACAGTTTGTCATTG
1 TATTTACTGTTGGAAATCAAGAGTTTACCATTG
* *
29693046 TATCTATTGTTGGAAATCAAG
1 TATTTACTGTTGGAAATCAAG
29693067 CACATTAGCT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 45 1.00
ACGTcount: A:0.29, C:0.11, G:0.18, T:0.41
Consensus pattern (33 bp):
TATTTACTGTTGGAAATCAAGAGTTTACCATTG
Found at i:29694708 original size:37 final size:37
Alignment explanation
Indices: 29694667--29694747 Score: 94
Period size: 37 Copynumber: 2.2 Consensus size: 37
29694657 ATTATGAAAC
*
29694667 ATAAAAAATATATAAAAGTATGT-GTATATATATAT-TT
1 ATAAAAAA-AT-TAAAAATATGTAGTATATATATATATT
* *
29694704 ATAAAAAAATTAAAAATGTGTACGTATATGTATATATT
1 ATAAAAAAATTAAAAATATGTA-GTATATATATATATT
29694742 ATAAAA
1 ATAAAA
29694748 CGTATGTATG
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
35 9 0.24
36 2 0.05
37 19 0.50
38 8 0.21
ACGTcount: A:0.53, C:0.01, G:0.09, T:0.37
Consensus pattern (37 bp):
ATAAAAAAATTAAAAATATGTAGTATATATATATATT
Found at i:29695863 original size:44 final size:45
Alignment explanation
Indices: 29695787--29695872 Score: 113
Period size: 44 Copynumber: 1.9 Consensus size: 45
29695777 GCCAGGGAAG
* *
29695787 TAAGATTTGCTATTCTCAGTCTGCCTCACTGCAACTTTAGGGGTA
1 TAAGACTTGCTATTCTCAGTCTGCCTCACTGCAACCTTAGGGGTA
* *
29695832 TAAGACTTGCT-TTTTCAGTCTG-CTCCGCTGCAACCTTAGGG
1 TAAGACTTGCTATTCTCAGTCTGCCT-CACTGCAACCTTAGGG
29695873 AGATAGGATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
43 2 0.06
44 24 0.67
45 10 0.28
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (45 bp):
TAAGACTTGCTATTCTCAGTCTGCCTCACTGCAACCTTAGGGGTA
Found at i:29695951 original size:44 final size:45
Alignment explanation
Indices: 29695901--29696013 Score: 133
Period size: 44 Copynumber: 2.6 Consensus size: 45
29695891 GATCTACTTT
* * *
29695901 ACTGCAACTTCAGAGAGATAAGATCTACT-ATTTTAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATCTACTGACTTCAATCTGCTCC
* *
29695945 ACTGCAACTTCAGGGAGATAGGAT-TACTGGCTTCAATCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATCTACTGACTTCAATCTGCTCC
* * *
29695989 ATTTCAACTT-AGGGAGATAAAATCT
1 ACTGCAACTTCAGGGAGATAAGATCT
29696014 TTAATTTTCA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
43 15 0.26
44 43 0.74
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30
Consensus pattern (45 bp):
ACTGCAACTTCAGGGAGATAAGATCTACTGACTTCAATCTGCTCC
Found at i:29696021 original size:87 final size:87
Alignment explanation
Indices: 29695850--29696013 Score: 197
Period size: 87 Copynumber: 1.9 Consensus size: 87
29695840 GCTTTTTCAG
* * **
29695850 TCTGCTCCGCTGCAACCTTAGGGAGATAGGATTACAGGTACGATCTACTTTACTGCAACTTCAGA
1 TCTGCTCCACTGCAACCTTAGGGAGATAGGATTACAGGTACAATCTACTCCACTGCAACTTCAGA
*
29695915 GAGATAAGATCTACTATTTTAA
66 GAGATAAAATCTACTATTTTAA
* * * * *
29695937 TCTGCTCCACTGCAA-CTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCATTTCAACTT-A
1 TCTGCTCCACTGCAACCTT-AGGGAGATAGGATTACAGG-TACAATCTACTCCACTGCAACTTCA
*
29696000 GGGAGATAAAATCT
64 GAGAGATAAAATCT
29696014 TTAATTTTCA
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
86 3 0.05
87 45 0.70
88 16 0.25
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (87 bp):
TCTGCTCCACTGCAACCTTAGGGAGATAGGATTACAGGTACAATCTACTCCACTGCAACTTCAGA
GAGATAAAATCTACTATTTTAA
Found at i:29696165 original size:44 final size:44
Alignment explanation
Indices: 29696117--29696996 Score: 430
Period size: 44 Copynumber: 20.2 Consensus size: 44
29696107 CTTCGATCTG
* * * ** *
29696117 CTCCACTACTGCTTAGGGAGGTAAGATCTGTAATTTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTCAACCTA
*
29696161 CTCCACTGCTGCTCAGGGAGATAAGGTCTACAATCTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTCAACCTA
* * * * * *
29696205 CTCCACTGCTGCTCAGGGAGATAAG-GC-A-AGTGGGTTAAATCTG
1 CTCCACTGCTGCTCAGGGAGATAAGATCTACAAT--CTTCAACCTA
* * * * ** ** * *
29696248 CTTCC-CTACTAC-CTTGGGAAGATAAGAATC-GCCGTCTTTGATCTG
1 C-TCCACTGCTGCTC-AGGG-AGATAAG-ATCTACAATCTTCAACCTA
* * * * * ** *
29696293 CTCTACT-ATAACTTAGGGAGATAAGATTTGTAATTTTCAACCTA
1 CTCCACTGCT-GCTCAGGGAGATAAGATCTACAATCTTCAACCTA
* * *
29696337 CTCTACTACTGCTCAGGGAGATAGGAT-TCACAATCTTCAACCTA
1 CTCCACTGCTGCTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* * *
29696381 TTCCACTGTTGACT-AGGGAGATAGGA-CTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
*
29696425 CTCCACTGCTGAC-CAGGGAGATAGGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATC-TACAATCTTCAACCTA
*
29696469 TTCCACTGCTGAC-CAGGGAGAT-AG-TACTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGAT-CT-ACAATCTTCAACCTA
* * *
29696513 TTCCACTGCTGAC-CAGGGATATAGGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATC-TACAATCTTCAACCTA
* * * * *
29696557 TTCCATTGCTGAC-CAAGAAGATATGA-CTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* * *
29696601 TTCCACTGCTGAC-CAGGGAGATAGGA-CTCAAAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* *
29696645 TTCCACTGCTGACT-AGGGAGATATGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATC-TACAATCTTCAACCTA
* * *
29696689 TTCCACTGCTGAC-CAGAGAGATAGGA-CTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* * *
29696733 TTCCACTGCTAAC-CAGGGAGA-AAG------GA--TTC-ACCTA
1 CTCCACTGCT-GCTCAGGGAGATAAGATCTACAATCTTCAACCTA
* * *
29696767 TTTCACTGCTGACT-AGGGAGATAGGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATC-TACAATCTTCAACCTA
* *
29696811 TTCCACTGCTGAC-CAGGGAGATAAGA-CTTACAATCTGCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATC-TACAATCTTCAACCTA
* *
29696855 TTCCACTGCTGAC-CAGGGAGATAGGA-CTCACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* * * * * * *
29696899 TTCCACTACTGAC-CAGGAAGATAGGAT-TCACCATCTTCAGCATA
1 CTCCACTGCTG-CTCAGGGAGATAAGATCT-ACAATCTTCAACCTA
* * *
29696943 TTCCACTGCTGACT-AGGGAGGTAGGA-CTTACAATCTTCAACCTA
1 CTCCACTGCTG-CTCAGGGAGATAAGATC-TACAATCTTCAACCTA
*
29696987 TTCCACTGCT
1 CTCCACTGCT
29696997 AACCAGAGAG
Statistics
Matches: 698, Mismatches: 90, Indels: 96
0.79 0.10 0.11
Matches are distributed among these distances:
34 22 0.03
35 5 0.01
37 1 0.00
41 3 0.00
42 2 0.00
43 29 0.04
44 610 0.87
45 23 0.03
46 1 0.00
47 2 0.00
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (44 bp):
CTCCACTGCTGCTCAGGGAGATAAGATCTACAATCTTCAACCTA
Found at i:29696211 original size:176 final size:176
Alignment explanation
Indices: 29696020--29696403 Score: 571
Period size: 176 Copynumber: 2.2 Consensus size: 176
29696010 ATCTTTAATT
* *
29696020 TTCAACTTACTCCACTGCTGCATAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACC
1 TTCAACCTACTCCACTGCTGCATAGGGAGATAAGGCAAGTGGCTTAAATCTGCTTCCCTACTACC
* * *
29696085 TTGGGAAGATAAGAGTCGCCGTCTTCGATCTGCTCCACTACT-GCTTAGGGAGGTAAGATCTGTA
66 TTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTA-TAACTTAGGGAGATAAGATCTGTA
*
29696149 ATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGG--TCTACAATC
130 ATTTTCAACCTACTCCACTACTGCTCAGGGAGAT-AGGATTC-ACAATC
*
29696196 TTCAACCTACTCCACTGCTGC-TCAGGGAGATAAGGCAAGTGGGTTAAATCTGCTTCCCTACTAC
1 TTCAACCTACTCCACTGCTGCAT-AGGGAGATAAGGCAAGTGGCTTAAATCTGCTTCCCTACTAC
* * *
29696260 CTTGGGAAGATAAGAATCGCCGTCTTTGATCTGCTCTACTATAACTTAGGGAGATAAGATTTGTA
65 CTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTATAACTTAGGGAGATAAGATCTGTA
*
29696325 ATTTTCAACCTACTCTACTACTGCTCAGGGAGATAGGATTCACAATC
130 ATTTTCAACCTACTCCACTACTGCTCAGGGAGATAGGATTCACAATC
* *
29696372 TTCAACCTATTCCACTGTTG-ACTAGGGAGATA
1 TTCAACCTACTCCACTGCTGCA-TAGGGAGATA
29696404 GGACTCACAA
Statistics
Matches: 189, Mismatches: 13, Indels: 12
0.88 0.06 0.06
Matches are distributed among these distances:
175 5 0.03
176 181 0.96
177 3 0.02
ACGTcount: A:0.27, C:0.24, G:0.21, T:0.29
Consensus pattern (176 bp):
TTCAACCTACTCCACTGCTGCATAGGGAGATAAGGCAAGTGGCTTAAATCTGCTTCCCTACTACC
TTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTATAACTTAGGGAGATAAGATCTGTAA
TTTTCAACCTACTCCACTACTGCTCAGGGAGATAGGATTCACAATC
Found at i:29696271 original size:88 final size:86
Alignment explanation
Indices: 29696020--29696274 Score: 203
Period size: 88 Copynumber: 2.9 Consensus size: 86
29696010 ATCTTTAATT
*
29696020 TTCAACTTACTCCACTGCTGCATAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACC
1 TTCAACCTACTCCACTGCTGC-TAGGGAGATAAGGC-AGTGGCTTAAATCTGCTTCCCTACTACC
* **
29696085 TTGGGAAGATAAGAGTCGCCGTC
64 TTGGGAAGATAAGAGTCACAATC
* * * * * * * *** * * * *
29696108 TTCGATCTGCTCCACTACTGCTTAGGGAGGTAAGATCTGTAATTTTCAACCTAC-TCCACTGCT-
1 TTCAACCTACTCCACTGCTGC-TAGGGAGATAAG-GCAGT-GGCTTAAATCTGCTTCC-CTACTA
* *
29696171 GCTCAGGG-AGATAAG-GTCTACAATC
62 CCT-TGGGAAGATAAGAGTC-ACAATC
*
29696196 TTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGCAAGTGGGTTAAATCTGCTTCCCTACTACC
1 TTCAACCTACTCCACTGCTGCT-AGGGAGATAAGGC-AGTGGCTTAAATCTGCTTCCCTACTACC
29696261 TTGGGAAGATAAGA
64 TTGGGAAGATAAGA
29696275 ATCGCCGTCT
Statistics
Matches: 119, Mismatches: 37, Indels: 21
0.67 0.21 0.12
Matches are distributed among these distances:
87 19 0.16
88 85 0.71
89 15 0.13
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (86 bp):
TTCAACCTACTCCACTGCTGCTAGGGAGATAAGGCAGTGGCTTAAATCTGCTTCCCTACTACCTT
GGGAAGATAAGAGTCACAATC
Found at i:29696398 original size:88 final size:88
Alignment explanation
Indices: 29696328--29697010 Score: 915
Period size: 88 Copynumber: 7.9 Consensus size: 88
29696318 ATTTGTAATT
* * * *
29696328 TTCAACCTACTCTACTACTG-CTCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGTT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGCT
* *
29696391 GACTAGGGAGATAGGACTCACAATC
64 GACCAGGGAGATAAGACTCACAATC
*
29696416 TTCAACCTACTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
29696481 CCAGGGAGAT-AGTACTCACAATC
66 CCAGGGAGATAAG-ACTCACAATC
* *
29696504 TTCAACCTATTCCACTGCTGACCAGGGATATAGGACTTACAATCTTCAACCTATTCCATTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
* * *
29696569 CCAAGAAGATATGACTCACAATC
66 CCAGGGAGATAAGACTCACAATC
* *
29696592 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAAAATCTTCAACCTATTCCACTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
* * *
29696657 CTAGGGAGATATGACTTACAATC
66 CCAGGGAGATAAGACTCACAATC
* * *
29696680 TTCAACCTATTCCACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
*
29696745 CCAGGGAGA-AAG------GA--
66 CCAGGGAGATAAGACTCACAATC
* *
29696759 TTC-ACCTATTTCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
*
29696823 CCAGGGAGATAAGACTTACAATC
66 CCAGGGAGATAAGACTCACAATC
* * *
29696846 TGCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
* * * *
29696911 CCAGGAAGATAGGATTCACCATC
66 CCAGGGAGATAAGACTCACAATC
* * * * *
29696934 TTCAGCATATTCCACTGCTGACTAGGGAGGTAGGACTTACAATCTTCAACCTATTCCACTGCTAA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
*
29696999 CCAGAGAGATAA
66 CCAGGGAGATAA
29697011 AGCTTTGTGA
Statistics
Matches: 529, Mismatches: 52, Indels: 28
0.87 0.09 0.05
Matches are distributed among these distances:
78 65 0.12
79 6 0.01
81 1 0.00
85 1 0.00
87 5 0.01
88 447 0.84
89 4 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (88 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
CCAGGGAGATAAGACTCACAATC
Found at i:29696443 original size:132 final size:132
Alignment explanation
Indices: 29696307--29697009 Score: 944
Period size: 132 Copynumber: 5.4 Consensus size: 132
29696297 ACTATAACTT
* ** * * * * *
29696307 AGGGAGATAAGATTTGTAATTTTCAACCTACTCTACTACTG-CTCAGGGAGATAGGATTCACAAT
1 AGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGACTCACAAT
* * *
29696371 CTTCAACCTATTCCACTGTTGACTAGGGAGATAGGACTCACAATCTTCAACCTACTCCACTGCTG
65 CTTCAACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTG
29696436 ACC
130 ACC
* *
29696439 AGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGTACTCACAATC
1 AGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
* * *
29696504 TTCAACCTATTCCACTGCTGACCAGGGATATAGGACTTACAATCTTCAACCTATTCCATTGCTGA
66 TTCAACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
29696569 CC
131 CC
* * * * *
29696571 AAGAAGATATGACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCAAAATC
1 AGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
*
29696636 TTCAACCTATTCCACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCCACTGCTGA
66 TTCAACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
29696701 CC
131 CC
* * * * *
29696703 AGAGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTAACCAGGGAGAAAGG-------A--
1 AGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
*
29696759 TTC-ACCTATTTCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
66 TTCAACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
29696823 CC
131 CC
*
29696825 AGGGAGATAAGACTTACAATCTGCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
1 AGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
* * * * * *
29696890 TTCAACCTATTCCACTACTGACCAGGAAGATAGGA-TTCACCATCTTCAGCATATTCCACTGCTG
66 TTCAACCTATTCCACTGCTGACTAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGCTG
*
29696954 ACT
130 ACC
* * * *
29696957 AGGGAGGTAGGACTTACAATCTTCAACCTATTCCACTGCTAACCAGAGAGATA
1 AGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATA
29697010 AAGCTTTGTG
Statistics
Matches: 506, Mismatches: 53, Indels: 24
0.87 0.09 0.04
Matches are distributed among these distances:
122 110 0.22
123 3 0.01
125 1 0.00
129 1 0.00
131 5 0.01
132 385 0.76
133 1 0.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (132 bp):
AGGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
TTCAACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGA
CC
Found at i:29696774 original size:34 final size:34
Alignment explanation
Indices: 29696728--29696792 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 34
29696718 ACAATCTTCA
29696728 ACCTATTCCACTGCTAACCAGGGAGAAAGGATTC
1 ACCTATTCCACTGCTAACCAGGGAGAAAGGATTC
* * * *
29696762 ACCTATTTCACTGCTGACTAGGGAGATAGGA
1 ACCTATTCCACTGCTAACCAGGGAGAAAGGA
29696793 CTTACAATCT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
34 27 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (34 bp):
ACCTATTCCACTGCTAACCAGGGAGAAAGGATTC
Found at i:29703489 original size:23 final size:22
Alignment explanation
Indices: 29703449--29703492 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
29703439 AAATTATAAA
*
29703449 ATATAAAAATATATATATGTAC
1 ATATAAAAAAATATATATGTAC
29703471 ATATAAGAAAAATATATATGTA
1 ATATAA-AAAAATATATATGTA
29703493 AGTAAATTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.57, C:0.02, G:0.07, T:0.34
Consensus pattern (22 bp):
ATATAAAAAAATATATATGTAC
Found at i:29704237 original size:19 final size:19
Alignment explanation
Indices: 29704213--29704268 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 19
29704203 AATCATATAT
29704213 TCTAAGATTCCATATCATA
1 TCTAAGATTCCATATCATA
*
29704232 TCTAAGATTGCATATATCATA
1 TCTAAGATT-C-CATATCATA
*
29704253 TCTAAGATTGCATATC
1 TCTAAGATTCCATATC
29704269 CTTGAAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 14 0.44
20 1 0.03
21 17 0.53
ACGTcount: A:0.36, C:0.18, G:0.09, T:0.38
Consensus pattern (19 bp):
TCTAAGATTCCATATCATA
Found at i:29704250 original size:21 final size:21
Alignment explanation
Indices: 29704224--29704267 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
29704214 CTAAGATTCC
29704224 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
29704245 ATATCATATCTAAGATTGCAT
1 ATATCATATCTAAGATTGCAT
29704266 AT
1 AT
29704268 CCTTGAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (21 bp):
ATATCATATCTAAGATTGCAT
Found at i:29704913 original size:44 final size:44
Alignment explanation
Indices: 29704818--29704979 Score: 132
Period size: 44 Copynumber: 3.7 Consensus size: 44
29704808 ACCTGATACG
* * * * * *
29704818 ATCTACTCTACTGCAACTTCAGAGAGATAAGCTCTATTATTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTCA
*
29704862 ATCTGCTCCACTGCAACTTCAGGGAGATAAGAT-TATTGGCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATT-ACTTCA
* * * * * *
29704906 ATTTGCTCCACTGCAGCTT-AGGGAGATAAAATCTGTAATTTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTA-CTTCA
* * **
29704950 ACCTACTCCACTGCTGC-TCAGGGAGATAAG
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAG
29704980 GTTAGTGGCT
Statistics
Matches: 95, Mismatches: 19, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
43 17 0.18
44 78 0.82
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (44 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGATCTATTACTTCA
Found at i:29705047 original size:88 final size:89
Alignment explanation
Indices: 29704955--29705231 Score: 260
Period size: 88 Copynumber: 3.1 Consensus size: 89
29704945 TTTCAACCTA
* *
29704955 CTCCACTGCTGCTCAGGGAGATAAGGT-TAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAG
1 CTCCACTACTGCTCAGGGAGATAAGGTCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAG
*
29705019 ATAAGATTCACCGTCTTCGATCTG
66 ATAAGAATCACCGTCTTCGATCTG
* * *** * * * * * *
29705043 CTCCACTACTGCTTAGGGAGATAAGATCT-GTAATTTTCAACCTAC-TCCACTGCT-GCTTAGGC
1 CTCCACTACTGCTCAGGGAGATAAGGTCTAGT-GGCTTAAATCTACTTCC-CTACTACCTTGGGA
* ** * * *
29705105 AGATAAG-GTCTACAATCTTCAACCTA
64 AGATAAGAATC-ACCGTCTTCGATCTG
* *
29705131 CTCCACTGCTGCTCAGGGAGATAA-GTCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAG
1 CTCCACTACTGCTCAGGGAGATAAGGTCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAG
**
29705195 ATAAGAATCGTCGTCTTCGATCTG
66 ATAAGAATCACCGTCTTCGATCTG
*
29705219 CTCTACTACTGCT
1 CTCCACTACTGCT
29705232 TAGGAATATA
Statistics
Matches: 139, Mismatches: 42, Indels: 16
0.71 0.21 0.08
Matches are distributed among these distances:
87 16 0.12
88 109 0.78
89 14 0.10
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.30
Consensus pattern (89 bp):
CTCCACTACTGCTCAGGGAGATAAGGTCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAG
ATAAGAATCACCGTCTTCGATCTG
Found at i:29705091 original size:44 final size:44
Alignment explanation
Indices: 29704911--29705361 Score: 183
Period size: 44 Copynumber: 10.2 Consensus size: 44
29704901 CTTCAATTTG
* * * *
29704911 CTCCACTGCAGCTTAGGGAGATAAAATCTGTAATTTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTA
* * * ** * * *
29704955 CTCCACTGCTGCTCAGGGAGATAAGGT-TAGT-GGCTTAAATCTC
1 CTCCACTACTGCTTAGGGAGATAAGATCT-GTAATCTTCAACCTA
* * * * * *
29704998 CTTCC-CTACTACCTT-GGGAAGATAAGAT-T-CACCGTCTTCGATCTG
1 C-TCCACTACT-GCTTAGGG-AGATAAGATCTGTA--ATCTTCAACCTA
*
29705043 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTA
* * * **
29705087 CTCCACTGCTGCTTAGGCAGATAAGGTCTACAATCTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTA
* * ** * * *
29705131 CTCCACTGCTGCTCAGGGAGATAAG-TCTAGT-GGCTTAAATCTG
1 CTCCACTACTGCTTAGGGAGATAAGATCT-GTAATCTTCAACCTA
* ** * * *
29705174 CTTCC-CTACTACCTT-GGGAAGATAAGAATC-GTCGTCTTCGATCTG
1 C-TCCACTACT-GCTTAGGG-AGATAAG-ATCTGTAATCTTCAACCTA
* * * *
29705219 CTCTACTACTGCTTAGGAATATAAGATCTGTAATTTTCAACCTA
1 CTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTA
* * * * ** * *
29705263 CTCCACTGCTGCTCAGGGAGAGAGGAT-TCACAATCTTTAACATA
1 CTCCACTACTGCTTAGGGAGATAAGATCT-GTAATCTTCAACCTA
* * * * *
29705307 TTACACTGCTGAC-CAGGGAGATAAGAT-TCATAATCTTCAACCTA
1 CTCCACTACTG-CTTAGGGAGATAAGATCT-GTAATCTTCAACCTA
*
29705351 TTCCACTACTG
1 CTCCACTACTG
29705362 ACAAGGGAGA
Statistics
Matches: 306, Mismatches: 78, Indels: 46
0.71 0.18 0.11
Matches are distributed among these distances:
43 37 0.12
44 230 0.75
45 36 0.12
46 3 0.01
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (44 bp):
CTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAACCTA
Done.