Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D03
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 50986338
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Warning! 218898 characters in sequence are not A, C, G, or T
File 95 of 170
Found at i:29705094 original size:176 final size:176
Alignment explanation
Indices: 29704911--29705331 Score: 596
Period size: 176 Copynumber: 2.4 Consensus size: 176
29704901 CTTCAATTTG
* ** *
29704911 CTCCACTGCAGCTTAGGGAGATAAAATCTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGA
1 CTCCACTGCTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGA
*
29704976 TAAGGT-TAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGATTCACCGTCTTCGAT
66 TAA-GTCTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGAATCACCGTCTTCGAT
*
29705040 CTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTA
130 CTGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAACCTA
* **
29705087 CTCCACTGCTGCTTAGGCAGATAAGGTCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGA
1 CTCCACTGCTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGA
* **
29705152 TAAGTCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCGTCGTCTTCGATC
66 TAAGTCTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGAATCACCGTCTTCGATC
* *
29705217 TGCTCTACTACTGCTTAGGAATATAAGATCTGTAATTTTCAACCTA
131 TGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAACCTA
* * ** * * * *
29705263 CTCCACTGCTGCTCAGGGAGAGAGGAT-TCACAATCTTTAACATATTACACTGCTGAC-CAGGGA
1 CTCCACTGCTGCTTAGGGAGATAAAATCT-ACAATCTTCAACCTACTCCACTGCTG-CTCAGGGA
29705326 GATAAG
64 GATAAG
29705332 ATTCATAATC
Statistics
Matches: 219, Mismatches: 23, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
175 3 0.01
176 215 0.98
177 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.19, T:0.29
Consensus pattern (176 bp):
CTCCACTGCTGCTTAGGGAGATAAAATCTACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGA
TAAGTCTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGAATCACCGTCTTCGATC
TGCTCCACTACTGCTTAGGAAGATAAGATCTGTAATTTTCAACCTA
Found at i:29705153 original size:132 final size:130
Alignment explanation
Indices: 29704880--29705155 Score: 313
Period size: 132 Copynumber: 2.1 Consensus size: 130
29704870 CACTGCAACT
** * *
29704880 TCAGGGAGATAAGATTATTGGCTTCAATTTGCTCCACTGCAGCTTAGGGAGATAAAATCTGTAAT
1 TCAGGGAGATAAGATTACCGGCTTCAATCTGCTCCACTACAGCTTAGGGAGATAAAATCTGTAAT
* *** * *
29704945 TTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGGTTAGTGGCTTAAATCTCCTTCCCTACTAC
66 TTTCAACCTACTCCACTGCTGCTCAGGCAGATAAGGTTACAAGCTTAAACCTACTTCCCTACTAC
* * * * *
29705010 -CTTGGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGT
1 TC-AGGG-AGATAAGATT-ACCGGCTTCAATCTGCTCCACTACAGCTTAGGGAGATAAAATCTGT
* * *
29705074 AATTTTCAACCTACTCCACTGCTGCTTAGGCAGATAAGGTCTACAATCTTCAACCTAC-TCCACT
63 AATTTTCAACCTACTCCACTGCTGCTCAGGCAGATAAGGT-TACAAGCTTAAACCTACTTCC-CT
* *
29705138 GCTGC
126 ACTAC
29705143 TCAGGGAGATAAG
1 TCAGGGAGATAAG
29705156 TCTAGTGGCT
Statistics
Matches: 119, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
129 1 0.01
130 3 0.03
131 10 0.08
132 86 0.72
133 18 0.15
134 1 0.01
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (130 bp):
TCAGGGAGATAAGATTACCGGCTTCAATCTGCTCCACTACAGCTTAGGGAGATAAAATCTGTAAT
TTTCAACCTACTCCACTGCTGCTCAGGCAGATAAGGTTACAAGCTTAAACCTACTTCCCTACTAC
Found at i:29705363 original size:44 final size:44
Alignment explanation
Indices: 29705249--29705380 Score: 158
Period size: 44 Copynumber: 3.0 Consensus size: 44
29705239 ATAAGATCTG
* * *
29705249 TAATTTTCAACCTACTCCACTGCTG-CTCAGGGAGAGAGGATTCA
1 TAATCTTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCA
* * * * *
29705293 CAATCTTTAACATATTACACTGCTGACCAGGGAGATAAGATTCA
1 TAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
* *
29705337 TAATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTCA
1 TAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
29705381 CCTATTTCAT
Statistics
Matches: 72, Mismatches: 15, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
44 71 0.99
45 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (44 bp):
TAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCA
Found at i:29705483 original size:254 final size:254
Alignment explanation
Indices: 29705126--29705661 Score: 810
Period size: 254 Copynumber: 2.1 Consensus size: 254
29705116 ACAATCTTCA
* * * *
29705126 ACCTACTCCACTGCTG-CTCAGGGAGATAAGTCTAGTGGCTTAAATCTGCTTCCCTACTACCTTG
1 ACCTATTCCACTGATGAC-CAGGGAGATAAGGCTACTGGCTTAAATCTGCTTCCCTACTACCTTG
* *
29705190 GGAAGATAAGAATCGTCGTCTTCGATCTGCTCTACTACTGCTTAG-GAATATAAGATCTGTAATT
65 GGAAGATAAGAATCGTCGTCTTCGATCTGCTCCACTACTGCTTAGAG-AGATAAGATCTGTAATT
* * *
29705254 TTCAACCTACTCCACTGCTGCTCAGGGAGAGAGGATTCACAATCTTTAACATATTAC-ACTGCTG
129 TTCAACCTACTCCACCGCTGCTCAGGGAGAGAGAATTCACAATCTTCAACATATT-CTACTGCTG
*
29705318 ACCAGGGAGATAAGATTCATAATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTC
193 ACCAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTC
* * * *
29705380 ACCTATTTCATTGTTGACCAGGGAGATAAGGCTACTGGCTTAAATTTGCTTCCCTACTACCTTGG
1 ACCTATTCCACTGATGACCAGGGAGATAAGGCTACTGGCTTAAATCTGCTTCCCTACTACCTTGG
29705445 GAAGATAAGAATCG-CTGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTT
66 GAAGATAAGAATCGTC-GTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTT
* * * *
29705509 TCAACCTACTTCACCGCTGCTCAGGGAGATAGAATTCACAATCTTCAGCCTATTCTACTGCTGAC
130 TCAACCTACTCCACCGCTGCTCAGGGAGAGAGAATTCACAATCTTCAACATATTCTACTGCTGAC
* * * *
29705574 CAGGGAGATAGGATTCACAATCTTCGACCTATTCCACTGCTGACCAGGGAGATAGGATTC
195 CAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTC
29705634 ACCTATTCCACTGATGACCAGGGAGATA
1 ACCTATTCCACTGATGACCAGGGAGATA
29705662 GGATTCACCT
Statistics
Matches: 254, Mismatches: 24, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
253 2 0.01
254 250 0.98
255 2 0.01
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.29
Consensus pattern (254 bp):
ACCTATTCCACTGATGACCAGGGAGATAAGGCTACTGGCTTAAATCTGCTTCCCTACTACCTTGG
GAAGATAAGAATCGTCGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCTGTAATTTT
CAACCTACTCCACCGCTGCTCAGGGAGAGAGAATTCACAATCTTCAACATATTCTACTGCTGACC
AGGGAGATAAGATTCACAATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTC
Found at i:29705578 original size:44 final size:43
Alignment explanation
Indices: 29705508--29712087 Score: 645
Period size: 44 Copynumber: 153.7 Consensus size: 43
29705498 ATCTGTAATT
*
29705508 TTCAACCTACTT-CACCGCTG-CTCAGGGAGATAGAATTCACAATC
1 TTCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * *
29705552 TTCAGCCTATTCTACTGCTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* *
29705596 TTCGACCTATTCCACTGCTGACCAGGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* *
29705631 TTC-ACCTATTCCACTGATGACCAGGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* * *
29705665 TTC-ACCTATTCCACTGCTAACCAGGGAAATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
** * * *
29705708 TTCAACCTATTCCACTATTGACCAGGGAGATAGGACTCACAACC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * *
29705752 TTCAACCTATTCCACTGCTGGCCAAGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * ** ****
29705796 TTCAACCTGTTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* ** * * * * **
29705839 TTAAATTTGCTTCC-CTACT-ACCTTGGGAAGATA-AGATTCGCCGTC
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * ** * * ** *
29705884 TTCTATCTGCTCCACTACT-ACTTTA-GGAGATA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC--CAGGGAGATAGA-AT-TACAATC
* * *
29705928 TTCAACCTACTCTACTGCTG-CTCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* *
29705972 TTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
*
29706016 TTCAACCTATTCCACTGCTGACCAGGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* *
29706051 TTC-ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
** * * *
29706094 TTCAACCTATTCCACTATTGATCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * *
29706138 TTCAACCTATTCCACTCCTGACCAGGGAGATTGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGA-TAGAATTACAATC
* * ** ****
29706182 TTCAACCTGTTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * ** **
29706225 TT-ACATCTGCTTCC-CTACT-ACCTTGGAAAGATAAGAATCGCCGTC
1 TTCA-ACCT-ATTCCACTGCTGACC-AGG-GAGAT-AGAATTACAATC
* ** ** * * * * * ** *
29706270 TTCGATTTGGTCTACTACTG-CTTAGAGAGATAAGATTTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGAT-AGAATTACAATC
* *
29706314 TTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * * * *
29706358 TTCAACCTCTTACACTACTGACCAGGCAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * * * * *
29706402 TTGAACCTATTCCACTACTGGCAAGGGACATAGGATTGAC---C
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * * * *
29706443 -T--A--T-TT-CACTACTGACTAGGCATATATGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * ****
29706480 TTCAACCTATTCCACTACTGACCACGGAGATA-AGGTTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * **
29706523 TTAAATCTTCTTCC-CTACT-ACCTTGGGAAGATA-AGATTCGCCGTC
1 TTCAA-CCTATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * ** * ** ** *
29706568 TTCGATCTGCTCCACTACTG-CTTTGGGAGATA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* * *
29706612 TTCAACCTACTGCACTGCTG-CTCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * * *
29706656 TTAAACCTATTCCATTGCTGACCAGGGAGATAGGATTCATAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* *
29706700 TTCAACCTATTCCACTGCTGACCAAGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
*
29706735 TTC-ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * * * *
29706778 TTCAACCTATTTCACTGTTAACCAGGGAGATACGACTCATAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
*
29706822 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
** * ****
29706866 TTCAACCTATTCCACTATTGACCAGGGAGATA-AGACTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * ** **
29706909 TTAAATCTCCTTCC-CTACT-ACCTTGGGAAGATAAGAATCGCCGTC
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGAT-AGAATTACAATC
* * ** * * ** ** *
29706954 TTCGATCTGCTCTACTACTG-CTTTGGGAGATA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* * * **
29706998 TTCAACTTACTCCACTACTGTTCAGGGAGATAGAATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * * *
29707042 TACAACCTATTACACTGCTGACCAGAGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* ** * **
29707086 TTCAATCTATTCCACTATTGA-CAAGG-G--A-AA-T--AGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* * * *
29707121 TTC-ACCTATTTCACTGCT-AGCCAGGGAAATATGACTTACAATA
1 TTCAACCTATTCCACTGCTGA-CCAGGGAGATA-GAATTACAATC
* * * ***
29707164 TTCAACCTATTCCACTACTGACCAGAGAGATA-AGACTAGTGGT-
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTA-CAATC
* * * * * * * *
29707207 TTAAATCTTCTTCC-CTACT-ACCTTGGGAAGATAAAATTCGCCATC
1 TTCAA-CCTATTCCACTGCTGACC-AGGG-AGATAGAATT-ACAATC
* * * * ** * *** *
29707252 TTCGATCTACTCCACTACT-ACTTTGGGAAATA-AGATCTGTGATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* * * *
29707296 TTCAACCTACTCCACCGCTG-CTTAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* *
29707340 TTCAACCTACTT-CACTGTTGACCAGGGAGATAG------GA--
1 TTCAACCTA-TTCCACTGCTGACCAGGGAGATAGAATTACAATC
* * * *
29707375 TTC-ACCTATCCCACTACTAACCAGGGAGATAAGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGAT-AGAATTACAATC
*** * * ** ***
29707418 TTCAAGAAATTCCACTACTGACCAGGGAGACA-AGGCTAGTGGT-
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTA-CAATC
* * * * ** * * *
29707461 TTAAATCTACTTCC-CTACT-ACCTTTGAAAGATA-AGATTCGCCATT
1 TTCAACCTA-TTCCACTGCTGACC--AGGGAGATAGA-ATT-ACAATC
* * * * ** * * ** *
29707506 TTCGATCTACTCTACTATTG-CTTAGGGAGATA-ACTTTTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA--ATTACAATC
* *
29707550 TTCAACCTATTCCACTGCTG-CTCAAGGAGATA-AGATTCACAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-ATT-ACAATC
29707594 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAA-TTACAATC
* * ** ****
29707638 TTCAACCTGTTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * **
29707681 TTAAATCTACTTCC-CTACT-ACCTTGGAAAGATAAGAATTGCCGTC
1 TTCAACCTA-TTCCACTGCTGACC-AGG-GAGAT-AGAATTACAATC
* ** ** * * * * ** *
29707726 TTCGATTTGGTCTACTACT--CCTTAGAGAGATAAGATTTGTAATT
1 TTCAACCTATTCCACTGCTGACC--AGGGAGAT-AGAATTACAATC
* * * *
29707770 TTAAACCTACTCCACTGCT-ATTCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGA-CCAGGGAGATAGAATT-ACAATC
* * * * *
29707814 TTAAACCTCTTACAGTGCTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * *
29707858 TTCAACCTATTCCACTACTGACAAGGGAGATAGGATTGAC---C
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* *
29707899 -T--A--T-TT-CACTGCTGACTAGGGAGATATGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * * ****
29707936 TTCAACCTAATCCACTACTGACTAGGGAGATA-AGGTTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * * **
29707979 TTAAATCTTCTTCC-CTACT-ACCCTGGAAGATA-AGATTCGCCGTC
1 TTCAA-CCTATTCCACTGCTGA-CCAGGGAGATAGA-ATT-ACAATC
* * ** * * ** ** *
29708023 TTCGATCTGCTCAACTACTG-CTTTGGGAGATA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* * *
29708067 TTCAACCTACTCCACTGCTG-CTCTA-TGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-C-AGGGAGATAGAATT-ACAATC
* * *
29708111 TTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * **
29708155 TTCAACCTATTCCA-TAGCTAACCA---AG-GAG-ATT-GGA--
1 TTCAACCTATTCCACT-GCTGACCAGGGAGATAGAATTACAATC
*
29708190 TTC-ACCTATTCCACTGCTGACCAGGGAGATAAGATTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGAT-AGAATTACAATC
* *
29708233 TTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTTA-AGATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACA-ATC
* *
29708277 TTCAACCTATTCCACTGCTGACTAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * ** ****
29708321 TTCAACCTATTCCACTACTGACCAGGAAGAAAAGGCTT-GTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAG-ATAGAATTACAATC
* * * * * * **
29708364 TTAAATCTACTTCC-CTACT-ACCTTGGAAAGATA-AGATTCGCCGTC
1 TTCAACCTA-TTCCACTGCTGACC-AGG-GAGATAGA-ATT-ACAATC
* * * * ** * ** *
29708409 TTCGATCTACTCTACTATTG-CCTAGGGAGATA-ACTTTTGTAATT
1 TTCAACCTATTCCACTGCTGACC-AGGGAGATAGA--ATTACAATC
* * * * *
29708453 TTCAACATATTCCAGTGCTG-CTCAGGGAGATAGGATACACAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAAT-TACAATC
* * ** * * *
29708497 TTCTACCTATTTCACTATTGACGAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * *
29708541 TTCAACCTATTCCACTACTGGCCATGGG-GATAAGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCA-GGGAGAT-AGAATTACAATC
* * * * **
29708585 TTTAACCTATTCCACTACTGACTAGTGAGAT--AA-GGCTAATGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTAC-AAT--C
* * * * * ** **
29708628 TTAAATCTACTTCC-CTACT-ACCTTGGTAAGATAAGAATCGCCGTC
1 TTCAACCTA-TTCCACTGCTGACC-AGG-GAGAT-AGAATTACAATC
* * ** * * * ** *
29708673 TTCGATCTGCTCTACTACT-ACTTAGGGAGATA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* *
29708717 TTCAACCT-TCTCCACTGCT-ACTCAGGGAGATAGGATTCACATTC
1 TTCAACCTAT-TCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* *
29708761 TTCAACCTATTCCAATGTTGACCAGGGAGATAGAACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAA-TTACAATC
* ** ** ****
29708805 TTCAACCTATTCCACTACCAACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * *
29708848 TTAAATCTGCTTCC-CTACT-ACCTCGGAAAGATA-AGATT-CGACGTC
1 TTCAACCT-ATTCCACTGCTGACC-AGG-GAGATAGA-ATTAC-A-ATC
* * * * * * ** *
29708893 TTCGATCTACTCCACTACTG-CTTAGGGAGGTA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* * * * *
29708937 TTCAACCTACTCCACTGCTG-CTTAAGGAGAGAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * * * * *
29708981 TTTAACCTATTACACTTCTGACCAAGGAGATAGGATTCATAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * *
29709025 TTCAACCTATTCCACTACTGACAAGGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* * * * ** ****
29709060 TTC-ACCTATTTCACTGTTGAACAGAGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * ** * * * * **
29709102 CTAAATTTGCTTCC-CTACT-ACCTTGGGAAGATA-AGATTCGCTGTC
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * ** * * *
29709147 TTCGATCTGCTCCACTACTG-CTTAGGGAGATAAGATATGT--AATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGAT-AGA-AT-TACAATC
*
29709191 TTCAACCTACTT-CACTGCTG-CTCAGGGAGATAAAATTCACAATC
1 TTCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * * * *
29709235 TTCAGCCTATTCTAGTGCTGACCAGGGAGATAGGATTCATAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* *
29709279 TTCAACCTATTCCACTACTGACCAGGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* ** * *
29709314 TTC-ACCTATTCCACTGCTAACTTGAGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* *
29709357 TTCAACCTATTCCACTGCTGACGAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * * * ** ****
29709401 TTTAACCTGTTTCACTACTGACCAGAGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * * * *
29709444 TTAAATCTGCTTCC-CTACT-ACCCTGGAAAGATAAGAATCGCCGTCTTCGATT
1 TTCAACCT-ATTCCACTGCTGA-CCAGG-GAGAT-AGAA------T-TACAATC
* * *
29709496 TTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCAAAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * * *
29709540 TTCAACCTCTTACACTGCTGACCGGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * ** *
29709584 ATCAACCTATTCCACTACTGAAAAGGGAGATAGGATTGAC---C
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* *
29709625 -T--A--T-TT-CACTGCTGACTAGGGAGATATGATTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* ** ****
29709662 TTCAACCTATTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * * * **
29709705 TTACATCTTCTT-CTCTACT-ACCTTCGGAAGATATG-ATTCGCCGTC
1 TT-CAACCTATTCCACTGCTGACC--AGGGAGATA-GAATT-ACAATC
* * ** * * ** * ** *
29709750 TTCGATCTGCTCAACTACTG-CTTTGGGAGGTA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* * * *
29709794 TTCAACCTACTCCATTGCTG-CTCTGGGAGATAAGATTTACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGAT-AGAATTACAATC
* *
29709838 TTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* *
29709882 TTCAACCTATTCCACTGCTGACCAAGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* *
29709917 TTC-AGCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * *
29709960 TTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * *
29710004 TTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* ** ****
29710048 TTCAACCTATTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * **
29710091 TTAAATCTCCTTCC-CTACT-ACCTCGGGAAGATA-AGATTCGCTGTC
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * * * **
29710136 TTCGATCT-TCTCCACTACTG-CTTAGGGAGATA-AGATCTGTAAT-
1 TTCAACCTAT-TCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* *
29710179 TGTCAACCTACTCCACTGCTG-CTCAGGGAGAGA-AGATTCACAATC
1 T-TCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-ATT-ACAATC
* * * * *
29710224 TTTAACCTATTACACTGCTGACCAAGGAGATAGGATTCATAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * * **
29710268 TTCAACCTATTCCACTACT-AACAGGG-G--AG-A-GAGGA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* * * ** ****
29710303 TTC-ACCTATTTCATTGTTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* ** * * * * *
29710345 TTAAATTTGCTTCC-CTACT-ACCTTGGGAAGATA-AGATTCGCTATC
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * ** * * ** *
29710390 TTCGATCTGCTGCACTGCTG-CTTAGGGAGATA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* *
29710434 TTCAACCTACTT-CATTGTTG-CTCAGGGAGATAGAATTCACAATC
1 TTCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * *
29710478 TTCAGCCTATTCTACTGCTGACCAGGGAGATATG-ATTCACAAAC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATT-ACAATC
* *
29710522 TTCAACCTATTCGACTGCTGACCAGGGAGATAGGATT-C-A--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* *
29710561 -T----CTATTCCACTGCTAACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* ** * *
29710600 TTAAACCTATTCCACTATTGACCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* *
29710644 TTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * ** ****
29710688 TTCAACCTGTTCCACTTCTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* ** ** * * * ** **
29710731 TTAAATTTGCTCCCCTACT-ACCTTGGGAAGATAAGAATCGCCGTC
1 TTCAACCTATTCCACTGCTGACC-AGGG-AGAT-AGAATTACAATC
** ** ** * * * * * * ** *
29710776 TTTGATTTGGTCTACTACT-TCTTAGAGAGATAAGATTTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGAT-AGAATTACAATC
* * *
29710820 TTCAACCTACTCCACTGCTG-CTCAGGGACATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * * * *
29710864 CTCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * ** * *
29710908 TTCAACCTATTTCACTACTGAAAAAGGAGAT---A--A-GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* * * *
29710943 TT-GACCTATTTCACTGCTGACTAGGGAGATATGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* ** ****
29710986 TTCAACCTATTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * **
29711029 TTACATCTTCTTCC-CTACT-ACCTTCGGAAGATATG-ATTCACCGTC
1 TT-CAACCTATTCCACTGCTGACC--AGGGAGATA-GAATT-ACAATC
* * * ** ** *
29711074 TTCAATCTACTT-AACTACTG-CTTTGGGAGATA-AGATCTGTAATT
1 TTCAACCTA-TTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* * * *
29711118 TTCAACCTACTCCATTGCTG-CTCTGGGAGATAAGATTTACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGAT-AGAATTACAATC
* * *
29711162 TTCAACCTATTCCATTGCTGACCAAGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* *
29711206 TTCAACCTATTCCACTGCTGACCAAGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* *
29711241 TTC-ACCTATTCCACTGCTGACCAGGGAGATAGGACTTAAAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * *
29711284 TTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * *
29711328 TTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * * ** ****
29711372 TTCAACCTGTTGCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * * ** *
29711415 TTAAATCTGCTTCC-CTACT-ACCTTGGGAAGATAAGAATCACCGTA
1 TTCAACCT-ATTCCACTGCTGACC-AGGG-AGAT-AGAATTACAATC
** ** ** * * * * * * ** *
29711460 TTTGATTTGGTCTACTACAG-CTTAGAGAGATAAGATTTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGAT-AGAATTACAATC
* ** * * *
29711504 TTCAACTTACACCACTACTG-CTTAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * * *
29711548 TGCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATT-ACAATC
* * *
29711592 TTCAACCTATTCCACTACTGACAAGGGAGATAG------GA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* * *
29711627 TGC-ACCTAGTT-CACTGCTGACTAGGGAGATATGACTTACAATC
1 TTCAACCTA-TTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* ** ****
29711670 TTCAACCTATTCCACTACTGACCAGGGAGATA-AGGCTAGTGGC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGA-ATTACAATC
* * * * * **
29711713 TT-AAGTCTTCTTCC-CTACT-ACCTTGGGAAGATA-AGATTCGCCGTC
1 TTCAA--CCTATTCCACTGCTGACC-AGGG-AGATAGA-ATT-ACAATC
* * ** * ** ** *
29711758 TTCGATCTGCTCCACTACTG-CTTTGGGAGATA-AGATCTGTAATT
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGA-AT-TACAATC
* * *
29711802 TTCAACCTACTGCACTGCTG-CTCAGGGAGATAGGATTCACAATC
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGAATT-ACAATC
* * *
29711846 TTCAACCTATTCCATTGCTGACCAGGGAGATAGGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* **
29711890 TTCAACCTATTCCACTGTTGACCAGGGAG--AG----AGGA--
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
* **
29711925 TTC-ACCTATTCCACTGCTGACTAGGGAGATAGGACCTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * *
29711968 TTCAACCTATTCCACTGTTGACCAGGGAGATACGACTCACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
* * *
29712012 TTCAACCTATTCCACTGCTAACCAGAGAGATATGACTTACAATC
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA-GAATTACAATC
*
29712056 TTCAACCTATTCCACTACTGACCAGGGAGATA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATA
29712088 AGGCTAGTGG
Statistics
Matches: 4789, Mismatches: 1252, Indels: 990
0.68 0.18 0.14
Matches are distributed among these distances:
33 2 0.00
34 420 0.09
35 82 0.02
36 6 0.00
37 22 0.00
38 11 0.00
39 7 0.00
40 19 0.00
41 26 0.01
42 85 0.02
43 418 0.09
44 3295 0.69
45 352 0.07
46 13 0.00
47 4 0.00
48 2 0.00
50 3 0.00
51 8 0.00
52 14 0.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (43 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGAATTACAATC
Found at i:29705643 original size:34 final size:34
Alignment explanation
Indices: 29705600--29705698 Score: 171
Period size: 34 Copynumber: 2.9 Consensus size: 34
29705590 ACAATCTTCG
29705600 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
*
29705634 ACCTATTCCACTGATGACCAGGGAGATAGGATTC
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
* *
29705668 ACCTATTCCACTGCTAACCAGGGAAATAGGA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA
29705699 CTTACAATCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 61 1.00
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (34 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
Found at i:29705818 original size:88 final size:87
Alignment explanation
Indices: 29705668--29713684 Score: 1473
Period size: 88 Copynumber: 93.3 Consensus size: 87
29705658 GATAGGATTC
* * *
29705668 ACCTATTCCACTGCTAACCAGGGAAATAGGACTTACAATCTTCAACCTATTCCACTATTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
* *
29705733 GGAGATAGGACTCACAACCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * *
29705756 ACCTATTCCACTGCTGGCCAAGGAGATAGGACTTACAATCTTCAACCTGTTCCACTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
**** *
29705821 GGAGATAAGG-C-TAGTGGCTTAA
65 GGAGAT-AGGACTTACAATCTTCA
** * * * * * ** * * **
29705843 ATTTGCTTCC-CTACT-ACCTTGGGAAGATAAGATTCGCCGTCTTCTATCTGCTCCACTACT-AC
1 ACCT-ATTCCACTGCTGACC-AGGG-AGATAGGATT-ACAATCTTCAACCTATTCCACTACTGAC
* * *
29705905 TTTA-GGAGATAAGATCTGT--AATTTTCA
62 --CAGGGAGATAGGA-CT-TACAATCTTCA
* * * *
29705932 ACCTACTCTACTGCTG-CTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACCA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCA
*
29705996 GGGAGATAGGATTTACAATCTTCA
64 GGGAGATAGGACTTACAATCTTCA
* *
29706020 ACCTATTCCACTGCTGACCAGGGAGATAGG------A--TTC-ACCTATTCCACTGCTAACCAGG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTACAATCTTCAACCTATTCCACTACTGACCAGG
29706076 GAGATAGGACTTACAATCTTCA
66 GAGATAGGACTTACAATCTTCA
** * * *
29706098 ACCTATTCCACTATTGATCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
*
29706163 GGAGATTGGACTTACAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * * **** * *
29706186 ACCTGTTCCACTACTGACCAGGGAGATAAGG-CTAGTGGCTT-ACATCTGCTTCC-CTACT-ACC
1 ACCTATTCCACTGCTGACCAGGGAGAT-AGGATTACAATCTTCA-ACCT-ATTCCACTACTGACC
* * * * ** ** *
29706247 TTGGAAAGATAAGAATCGCCGTCTTCG
63 -AGG-GAGATAGGACTTACAATCTTCA
** ** * * * * * ** * * *
29706274 ATTTGGTCTACTACTG-CTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTG-CTC
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGAC-C
29706337 AGGGAGATAGGA-TTCACAATCTTCA
63 AGGGAGATAGGACTT-ACAATCTTCA
* * * * * * *
29706362 ACCTCTTACACTACTGACCAGGCAGATAGGATTCACAATCTTGAACCTATTCCACTACTGGCAAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCAG
*
29706427 GGACATAGGA-TTGAC---C-T--
65 GGAGATAGGACTT-ACAATCTTCA
* * * * * *
29706444 A--T-TT-CACTACTGACTAGGCATATATGACTTACAATCTTCAACCTATTCCACTACTGACCAC
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
**** *
29706505 GGAGATAAGG--TTAGTGGCTTAA
65 GGAGAT-AGGACTTACAATCTTCA
* * * * * * ** * * **
29706527 ATCTTCTTCC-CTACT-ACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTG-C
1 A-CCTATTCCACTGCTGACC-AGGG-AGATAGGATT-ACAATCTTCAACCTATTCCACTACTGAC
** * *
29706589 TTTGGGAGATAAGATCTGT--AATTTTCA
62 -CAGGGAGATAGGA-CT-TACAATCTTCA
* * * * *
29706616 ACCTACTGCACTGCTG-CTCAGGGAGATAGGATTCACAATCTTAAACCTATTCCATTGCTGACCA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCA
*
29706680 GGGAGATAGGA-TTCATAATCTTCA
64 GGGAGATAGGACTT-ACAATCTTCA
* *
29706704 ACCTATTCCACTGCTGACCAAGGAGATAGG------A--TTC-ACCTATTCCACTGCTGACCAGG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTACAATCTTCAACCTATTCCACTACTGACCAGG
29706760 GAGATAGGACTTACAATCTTCA
66 GAGATAGGACTTACAATCTTCA
* * * * * * *
29706782 ACCTATTTCACTGTTAACCAGGGAGATACGACTCATAATCTTCAACCTATTCCACTGCTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
*
29706847 GGAGATAGGATTTACAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
** * * **** * * * *
29706870 ACCTATTCCACTATTGACCAGGGAGATAAGACTAGTGGCTTAAATCTCCTTCC-CTACT-ACCTT
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTACAATCTTCAACCT-ATTCCACTACTGACC-A
* * ** ** *
29706933 GGGAAGATAAGAATCGCCGTCTTCG
64 GGG-AGATAGGACTTACAATCTTCA
* ** * * ** * ** * * * **
29706958 ATCTGCTCTACTACTG-CTTTGGGAGATAAGATCTGTAATTTTCAACTTACTCCACTACTGTTCA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGAT-TACAATCTTCAACCTATTCCACTACTGACCA
* *
29707022 GGGAGATA-GAATTCACAATCTACA
64 GGGAGATAGGACTT-ACAATCTTCA
* * * * *
29707046 ACCTATTACACTGCTGACCAGAGAGATAGGATTCACAATCTTCAATCTATTCCACTATTGACAAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCAG
*
29707111 GGAAATAGG---------CTTC-
65 GGAGATAGGACTTACAATCTTCA
* * * *
29707124 ACCTATTTCACTGCT-AGCCAGGGAAATATGACTTACAATATTCAACCTATTCCACTACTGACCA
1 ACCTATTCCACTGCTGA-CCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCA
* * *** *
29707188 GAGAGATAAGAC-TAGTGGT-TTAA
64 GGGAGATAGGACTTA-CAATCTTCA
* * * * ** * * * * *
29707211 ATCTTCTTCC-CTACT-ACCTTGGGAAGATAAAATTCGCCATCTTCGATCTACTCCACTACT-AC
1 A-CCTATTCCACTGCTGACC-AGGG-AGATAGGATT-ACAATCTTCAACCTATTCCACTACTGAC
** * * * *
29707273 TTTGGGAAATAAGATCTGT--GATTTTCA
62 -CAGGGAGATAGGA-CT-TACAATCTTCA
* * * **
29707300 ACCTACTCCACCGCTG-CTTAGGGAGATAGGATTCACAATCTTCAACCTACTT-CACTGTTGACC
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGATT-ACAATCTTCAACCTA-TTCCACTACTGACC
29707363 AGGGAGATAGG-------A--TTC-
63 AGGGAGATAGGACTTACAATCTTCA
* * * * ***
29707378 ACCTATCCCACTACTAACCAGGGAGATAAGACTTACAATCTTCAAGAAATTCCACTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
* *** *
29707443 GGAGACAAGG-C-TAGTGGT-TTAA
65 GGAGA-TAGGACTTA-CAATCTTCA
* * * ** * * * * * * * * *
29707465 ATCTACTTCC-CTACT-ACCTTTGAAAGATAAGATTCGCCATTTTCGATCTACTCTACTATTG-C
1 ACCTA-TTCCACTGCTGACC--AGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGAC
* ** *
29707527 TTAGGGAGATA--ACTTTTGTAATTTTCA
62 -CAGGGAGATAGGAC--TTACAATCTTCA
* * * *
29707554 ACCTATTCCACTGCTG-CTCAAGGAGATAAGATTCACAATTTTCAACCTATTCCACTGCTGACCA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCA
*
29707618 GGGAGATAGAACTTACAATCTTCA
64 GGGAGATAGGACTTACAATCTTCA
* * * **** * *
29707642 ACCTGTTCCACTACTGACCAGGGAGATAAGG-CTAGTGGCTTAAATCTACTTCC-CTACT-ACCT
1 ACCTATTCCACTGCTGACCAGGGAGAT-AGGATTACAATCTTCAACCTA-TTCCACTACTGACC-
* * * * * ** *
29707704 TGGAAAGATAAGAATTGCCGTCTTCG
63 AGG-GAGATAGGACTTACAATCTTCA
** ** * * * * ** * * * * *
29707730 ATTTGGTCTACTACT--CCTTAGAGAGATAAGATTTGTAATTTTAAACCTACTCCACTGCT-ATT
1 ACCTATTCCACTGCTGACC--AGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGA-C
*
29707792 CAGGGAGATAGGA-TTCACAATCTTAA
62 CAGGGAGATAGGACTT-ACAATCTTCA
* * * *
29707818 ACCTCTTACAGTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACAAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCAG
29707883 GGAGATAGGA-TTGAC---C-T--
65 GGAGATAGGACTT-ACAATCTTCA
* * * *
29707900 A--T-TT-CACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTAATCCACTACTGACTAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
**** *
29707961 GGAGATAAGG--TTAGTGGCTTAA
65 GGAGAT-AGGACTTACAATCTTCA
* * * * * * * ** * * ** *
29707983 ATCTTCTTCC-CTACT-ACCCTGGAAGATAAGATTCGCCGTCTTCGATCTGCTCAACTACTG-CT
1 A-CCTATTCCACTGCTGA-CCAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGAC-
** * *
29708045 TTGGGAGATAAGATCTGT--AATTTTCA
62 CAGGGAGATAGGA-CT-TACAATCTTCA
* * * *
29708071 ACCTACTCCACTGCTG-CTCTA-TGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACC
1 ACCTATTCCACTGCTGAC-C-AGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACC
*
29708134 AGGGAGATAGGA-TTCACAATATTCA
63 AGGGAGATAGGACTT-ACAATCTTCA
* * * *
29708159 ACCTATTCCA-TAGCTAACCAAGGAGATTGG------A--TTC-ACCTATTCCACTGCTGACCAG
1 ACCTATTCCACT-GCTGACCAGGGAGATAGGATTACAATCTTCAACCTATTCCACTACTGACCAG
* *
29708214 GGAGATAAGATTTACAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * *
29708237 ACCTATTCCACTGTTGACCAGGGAGATAGGACTTA-AGATCTTCAACCTATTCCACTGCTGACTA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACA-ATCTTCAACCTATTCCACTACTGACCA
29708301 GGGAGATAGGACTTACAATCTTCA
64 GGGAGATAGGACTTACAATCTTCA
* * * * **** * *
29708325 ACCTATTCCACTACTGACCAGGAAGAAAAGGCTT-GTGGCTTAAATCTACTTCC-CTACT-ACCT
1 ACCTATTCCACTGCTGACCAGGGAG-ATAGGATTACAATCTTCAACCTA-TTCCACTACTGACC-
* * * * ** *
29708387 TGGAAAGATAAGA-TTCGCCGTCTTCG
63 AGG-GAGATAGGACTT-ACAATCTTCA
* * * ** *** ** * * * *
29708413 ATCTACTCTACTATTG-CCTAGGGAGATAACTTTTGTAATTTTCAACATATTCCAGTGCTG-CTC
1 ACCTATTCCACTGCTGACC-AGGGAGAT-AGGATTACAATCTTCAACCTATTCCACTACTGAC-C
* * *
29708476 AGGGAGATAGGA-TACACAATTTTCT
63 AGGGAGATAGGACT-TACAATCTTCA
* ** * * *
29708501 ACCTATTTCACTATTGACGAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTGGCCAT
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCA-
* *
29708566 GGG-GATAAGACTTACAATCTTTA
64 GGGAGATAGGACTTACAATCTTCA
* * * * * *
29708589 ACCTATTCCACTACTGACTAGTGAGATAAGG-CT--AATGGCTTAAATCTACTTCC-CTACT-AC
1 ACCTATTCCACTGCTGACCAGGGAGAT-AGGATTACAAT--CTTCAACCTA-TTCCACTACTGAC
* * * * ** ** *
29708649 CTTGGTAAGATAAGAATCGCCGTCTTCG
62 C-AGG-GAGATAGGACTTACAATCTTCA
* ** * * * * ** * *
29708677 ATCTGCTCTACTACT-ACTTAGGGAGATAAGATCTGTAATTTTCAACCT-TCTCCACTGCT-ACT
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGAT-TACAATCTTCAACCTAT-TCCACTACTGAC-
*
29708739 CAGGGAGATAGGA-TTCACATTCTTCA
62 CAGGGAGATAGGACTT-ACAATCTTCA
* * * **
29708765 ACCTATTCCAATGTTGACCAGGGAGATAGAACTTACAATCTTCAACCTATTCCACTACCAACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
**** *
29708830 GGAGATAAGG-C-TAGTGGCTTAA
65 GGAGAT-AGGACTTACAATCTTCA
* * * * * * * * * *
29708852 ATCTGCTTCC-CTACT-ACCTCGGAAAGATAAGATT-CGACGTCTTCGATCTACTCCACTACTG-
1 ACCT-ATTCCACTGCTGACC-AGG-GAGATAGGATTAC-A-ATCTTCAACCTATTCCACTACTGA
* * * *
29708913 CTTAGGGAGGTAAGATCTGT--AATTTTCA
61 C-CAGGGAGATAGGA-CT-TACAATCTTCA
* * * * * * *
29708941 ACCTACTCCACTGCTG-CTTAAGGAGAGAGGATTCACAATCTTTAACCTATTACACTTCTGACCA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCA
* *
29709005 AGGAGATAGGA-TTCATAATCTTCA
64 GGGAGATAGGACTT-ACAATCTTCA
* * * ** * *
29709029 ACCTATTCCACTACTGACAAGGGAGATAGG------A--TTC-ACCTATTTCACTGTTGAACAGA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTACAATCTTCAACCTATTCCACTACTGACCAGG
**** * *
29709085 GAGATAAGG-C-TAGTGGCCTAA
66 GAGAT-AGGACTTACAATCTTCA
** * * * * * ** * * **
29709106 ATTTGCTTCC-CTACT-ACCTTGGGAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTG-C
1 ACCT-ATTCCACTGCTGACC-AGGG-AGATAGGATT-ACAATCTTCAACCTATTCCACTACTGAC
* * ** *
29709168 TTAGGGAGATAAGA-TATGTAATTTTCA
62 -CAGGGAGATAGGACT-TACAATCTTCA
** * * * *
29709195 ACCTACTT-CACTGCTG-CTCAGGGAGATAAAATTCACAATCTTCAGCCTATTCTAGTGCTGACC
1 ACCTA-TTCCACTGCTGAC-CAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACC
*
29709258 AGGGAGATAGGA-TTCATAATCTTCA
63 AGGGAGATAGGACTT-ACAATCTTCA
* * * ** *
29709283 ACCTATTCCACTACTGACCAGGGAGATAGG------A--TTC-ACCTATTCCACTGCTAACTTGA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTACAATCTTCAACCTATTCCACTACTGACCAGG
29709339 GAGATAGGACTTACAATCTTCA
66 GAGATAGGACTTACAATCTTCA
* * * *
29709361 ACCTATTCCACTGCTGACGAGGGAGATAGGACTTACAATCTTTAACCTGTTTCACTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
* **** *
29709426 AGAGATAAGG-C-TAGTGGCTTAA
65 GGAGAT-AGGACTTACAATCTTCA
* * * * * * * * * *
29709448 ATCTGCTTCC-CTACT-ACCCTGGAAAGATAAGAATCGCCGTCTTCGATTTTCAACCTACTCCAC
1 ACCT-ATTCCACTGCTGA-CCAGG-GAGAT-AG----G--AT-TACAATCTTCAACCTATTCCAC
* *
29709511 TGCTG-CTCAGGGAGATAGGA-TTCAAAATCTTCA
55 TACTGAC-CAGGGAGATAGGACTT-ACAATCTTCA
* * * * **
29709544 ACCTCTTACACTGCTGACCGGGGAGATAGGATTCACAATCATCAACCTATTCCACTACTGAAAAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCAG
29709609 GGAGATAGGA-TTGAC---C-T--
65 GGAGATAGGACTT-ACAATCTTCA
* *
29709626 A--T-TT-CACTGCTGACTAGGGAGATATGATTTACAATCTTCAACCTATTCCACTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
****
29709687 GGAGATAAGG-C-TAGTGGCTTACA
65 GGAGAT-AGGACTTACAATCTT-CA
* * * * * * * * * ** * * ** *
29709710 TCTTCTT-CTCTACT-ACCTTCGGAAGATATGATTCGCCGTCTTCGATCTGCTCAACTACTG-CT
1 ACCTATTCCACTGCTGACC--AGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGAC-
** * * *
29709772 TTGGGAGGTAAGATCTGT--AATTTTCA
62 CAGGGAGATAGGA-CT-TACAATCTTCA
* * * * * *
29709798 ACCTACTCCATTGCTG-CTCTGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCA
29709862 GGGAGATAGGA-TTCACAATCTTCA
64 GGGAGATAGGACTT-ACAATCTTCA
* * *
29709886 ACCTATTCCACTGCTGACCAAGGAGATAGG------A--TTC-AGCTATTCCACTGCTGACCAGG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTACAATCTTCAACCTATTCCACTACTGACCAGG
29709942 GAGATAGGACTTACAATCTTCA
66 GAGATAGGACTTACAATCTTCA
* * * * * *
29709964 ACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTTACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
29710029 GGAGATAGGACTTACAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * **** * * *
29710052 ACCTATTCCACTACTGACCAGGGAGATAAGG-CTAGTGGCTTAAATCTCCTTCC-CTACT-ACCT
1 ACCTATTCCACTGCTGACCAGGGAGAT-AGGATTACAATCTTCAACCT-ATTCCACTACTGACC-
* * * ** *
29710114 CGGGAAGATAAGA-TTCGCTGTCTTCG
63 AGGG-AGATAGGACTT-ACAATCTTCA
* * * * ** * *
29710140 ATCT-TCTCCACTACTG-CTTAGGGAGATAAGATCTGTAAT-TGTCAACCTACTCCACTGCTG-C
1 ACCTAT-TCCACTGCTGAC-CAGGGAGATAGGAT-TACAATCT-TCAACCTATTCCACTACTGAC
* * *
29710201 TCAGGGAGAGAAGA-TTCACAATCTTTA
62 -CAGGGAGATAGGACTT-ACAATCTTCA
* * * *
29710228 ACCTATTACACTGCTGACCAAGGAGATAGGATTCATAATCTTCAACCTATTCCACTACT-AACAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCA-
*
29710292 GGGAGAGAGG-------A--TTC-
64 GGGAGATAGGACTTACAATCTTCA
* * * * **** * ** *
29710306 ACCTATTTCATTGTTGACCAGGGAGATAAGG-CTAGTGGCTTAAATTTGCTTCC-CTACT-ACCT
1 ACCTATTCCACTGCTGACCAGGGAGAT-AGGATTACAATCTTCAACCT-ATTCCACTACTGACC-
* * * * *
29710368 TGGGAAGATAAGA-TTCGCTATCTTCG
63 AGGG-AGATAGGACTT-ACAATCTTCA
* ** * * * ** * * **
29710394 ATCTGCTGCACTGCTG-CTTAGGGAGATAAGATCTGTAATTTTCAACCTACTT-CATTGTTG-CT
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGAT-TACAATCTTCAACCTA-TTCCACTACTGAC-
*
29710456 CAGGGAGATA-GAATTCACAATCTTCA
62 CAGGGAGATAGGACTT-ACAATCTTCA
* * * * * *
29710482 GCCTATTCTACTGCTGACCAGGGAGATATGATTCACAAACTTCAACCTATTCGACTGCTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCAG
29710547 GGAGATAGGA-TT-C-A---T--
65 GGAGATAGGACTTACAATCTTCA
* * *
29710562 --CTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
*
29710625 GGAGATAGGACTCACAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * *
29710648 ACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTTCTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
**** *
29710713 GGAGATAAGG-C-TAGTGGCTTAA
65 GGAGAT-AGGACTTACAATCTTCA
** ** * * * * ** ** ** ** ** * *
29710735 ATTTGCTCCCCTACT-ACCTTGGGAAGATAAGAATCGCCGTCTTTGATTTGGTCTACTACT-TCT
1 ACCTATTCCACTGCTGACC-AGGG-AGAT-AGGATTACAATCTTCAACCTATTCCACTACTGAC-
* * * * ** *
29710798 TAGAGAGATAAGATTTGTAATTTTCA
62 CAGGGAGATAGGACTTACAATCTTCA
* * * * * *
29710824 ACCTACTCCACTGCTG-CTCAGGGACATAGGATTCACAATCCTCAACCTCTTACACTGCTGACCA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCA
*
29710888 GGGAGATAGGA-TTCACAATATTCA
64 GGGAGATAGGACTT-ACAATCTTCA
* * ** * * * *
29710912 ACCTATTTCACTACTGAAAAAGGAGATAAGATTGAC---C-T--A--T-TT-CACTGCTGACTAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCAG
*
29710967 GGAGATATGACTTACAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * **** * * *
29710990 ACCTATTCCACTACTGACCAGGGAGATAAGG-CTAGTGGCTTACATCTTCTTCC-CTACT-ACCT
1 ACCTATTCCACTGCTGACCAGGGAGAT-AGGATTACAATCTT-CAACCTATTCCACTACTGACC-
* * * **
29711052 TCGGAAGATATGA-TTCACCGTCTTCA
63 -AGGGAGATAGGACTT-ACAATCTTCA
* * * ** * ** * * * *
29711078 ATCTACTT-AACTACTG-CTTTGGGAGATAAGATCTGTAATTTTCAACCTACTCCATTGCTG-CT
1 ACCTA-TTCCACTGCTGAC-CAGGGAGATAGGAT-TACAATCTTCAACCTATTCCACTACTGAC-
* * *
29711140 CTGGGAGATAAGATTTACAATCTTCA
62 CAGGGAGATAGGACTTACAATCTTCA
* * * *
29711166 ACCTATTCCATTGCTGACCAAGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCAG
29711231 GGAGATAGG-------A--TTC-
65 GGAGATAGGACTTACAATCTTCA
* **
29711244 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
* *
29711309 GGAGATAGGACTCACAATCTTTA
65 GGAGATAGGACTTACAATCTTCA
* * * *
29711332 ACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTGTTGCACTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
**** *
29711397 GGAGATAAGG-C-TAGTGGCTTAA
65 GGAGAT-AGGACTTACAATCTTCA
* * * * * * ** * ** ** ** * *
29711419 ATCTGCTTCC-CTACT-ACCTTGGGAAGATAAGAATCACCGTATTTGATTTGGTCTACTACAG-C
1 ACCT-ATTCCACTGCTGACC-AGGG-AGAT-AGGATTACAATCTTCAACCTATTCCACTACTGAC
* * * * ** *
29711481 TTAGAGAGATAAGATTTGTAATTTTCA
62 -CAGGGAGATAGGACTTACAATCTTCA
* ** * * * * * *
29711508 ACTTACACCACTACTG-CTTAGGGAGATAGGATTCACAATCTGCAACCTCTTACACTGCTGACCA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCA
29711572 GGGAGATAGGA-TTCACAATCTTCA
64 GGGAGATAGGACTT-ACAATCTTCA
* * * * *
29711596 ACCTATTCCACTACTGACAAGGGAGATAGG------A--TGC-ACCTAGTT-CACTGCTGACTAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTACAATCTTCAACCTA-TTCCACTACTGACCAG
*
29711651 GGAGATATGACTTACAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * **** * *
29711674 ACCTATTCCACTACTGACCAGGGAGATAAGG-CTAGTGGCTT-AAGTCTTCTTCC-CTACT-ACC
1 ACCTATTCCACTGCTGACCAGGGAGAT-AGGATTACAATCTTCAA--CCTATTCCACTACTGACC
* * * ** *
29711735 TTGGGAAGATAAGA-TTCGCCGTCTTCG
63 -AGGG-AGATAGGACTT-ACAATCTTCA
* ** * ** * ** * * * *
29711762 ATCTGCTCCACTACTG-CTTTGGGAGATAAGATCTGTAATTTTCAACCTACTGCACTGCTG-CTC
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGAT-TACAATCTTCAACCTATTCCACTACTGAC-C
29711825 AGGGAGATAGGA-TTCACAATCTTCA
63 AGGGAGATAGGACTT-ACAATCTTCA
* * **
29711850 ACCTATTCCATTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
*
29711915 GGAGAGAGG-------A--TTC-
65 GGAGATAGGACTTACAATCTTCA
* * **
29711928 ACCTATTCCACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
* *
29711993 GGAGATACGACTCACAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * *
29712016 ACCTATTCCACTGCTAACCAGAGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
**** *
29712081 GGAGATAAGG-C-TAGTGGCTTAA
65 GGAGAT-AGGACTTACAATCTTCA
* * * * * * ** * * ** * *
29712103 ATCTACTTCC-TTACT-ACCTTGGGAAGATAAGAATTGCCGTCTTCGATCTGCTCTACGACTG-C
1 ACCTA-TTCCACTGCTGACC-AGGG-AGAT-AGGATTACAATCTTCAACCTATTCCACTACTGAC
** * *
29712165 TTTGGGAGATAAGATCTGT--AATTTTCA
62 -CAGGGAGATAGGA-CT-TACAATCTTCA
* * * * * * *
29712192 ACTTACTCCACTACTG-CTCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACCA
*
29712256 GAGAGATAGGA-TTCACAATCTTCA
64 GGGAGATAGGACTT-ACAATCTTCA
* * * * * ** * *
29712280 ACCTATTACACTACTGACAAAGGAGAT---A--A-GA--TTC-ACCTATTTTACTGCTGACTAGG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTACAATCTTCAACCTATTCCACTACTGACCAGG
*
29712336 GAGATATGACTTACAATCTTCA
66 GAGATAGGACTTACAATCTTCA
* * * * * **** * ** *
29712358 ACCTATTCAACTACTGACCAGAGAGGTAAGG-CTAGTGGCTTAAATTTTCTTCC-CTACT-ACCT
1 ACCTATTCCACTGCTGACCAGGGAGAT-AGGATTACAATCTTCAA-CCTATTCCACTACTGACC-
* * * * **
29712420 TGGGAAGATAAGA-TTCGCCATCTTTG
63 AGGG-AGATAGGACTT-ACAATCTTCA
* ** * ** * * * * * * *
29712446 ATCTGCTCCACTACTG-CTTTGGGAAATAAGATTTATAATTTTCAACCTACTCCATTGCTG-CTC
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGAC-C
*
29712509 AGGGAGATAGGA-TTCAGAATCTTCA
63 AGGGAGATAGGACTT-ACAATCTTCA
** * *
29712534 ACCTATTCCACTGCTGACCAAAGAGATAGG------A--TTC-ACCTATCCCACTGCTGACCAGG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTACAATCTTCAACCTATTCCACTACTGACCAGG
*
29712590 GAGATAGGACTTACAATCTTTA
66 GAGATAGGACTTACAATCTTCA
* * * **** * * *
29712612 ACCTATTCCTCTACTGACCAGGGAGATAAGG-CTAGTGGCTTAAATCTACTTTC-CTACT-ACCT
1 ACCTATTCCACTGCTGACCAGGGAGAT-AGGATTACAATCTTCAACCTA-TTCCACTACTGACC-
* * * ** ** *
29712674 TGGGAAGATAAGAATCGCCGTCTTCG
63 AGGG-AGATAGGACTTACAATCTTCA
* ** * ** * * ** * *
29712700 ATCTGCTCTACTATTG-CTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGACTA
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGAT-TACAATCTTCAACCTATTCCACTACTGACCA
29712764 GGGAGATAGGACTTACAATCTTCA
64 GGGAGATAGGACTTACAATCTTCA
* * * * * **** * *
29712788 ACCTATTCCACTACTAACCAGGAAGACAAGGCTT-GTGGCTTAAATCTACTTCC-CTACT-ACCT
1 ACCTATTCCACTGCTGACCAGGGAGA-TAGGATTACAATCTTCAACCTA-TTCCACTACTGACC-
* * * * ** *
29712850 AGGAAAGATAAGATTTGCTGTCTTCG
63 AGG-GAGATAGGACTTACAATCTTCA
* * * ** * * *** ** * * *
29712876 ATCTACTCTACTATTG-CTTAGGGCGATAACTTTTGTAATTTTCAACCTA-TCCAGTGCT-ACTC
1 ACCTATTCCACTGCTGAC-CAGGGAGAT-AGGATTACAATCTTCAACCTATTCCACTACTGAC-C
*
29712938 AGGGAGATAGGA-TTCACAATTTTCA
63 AGGGAGATAGGACTT-ACAATCTTCA
* ** * * * * *
29712963 ACCTATTTCACTATTGACGAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGGCCAT
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
* *
29713028 GGAGATAAGACTTATAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
* * * * **** * * *
29713051 ACCTATTCCACTACTGACTAGTGAGATAAGG-CTAGTGGCTTAAATCTACTT-CTCTACT-ACCT
1 ACCTATTCCACTGCTGACCAGGGAGAT-AGGATTACAATCTTCAACCTA-TTCCACTACTGACC-
* * * ** ** * *
29713113 TGGGAAGATAAGAATCGCCGTTTTCG
63 AGGG-AGATAGGACTTACAATCTTCA
* ** * * * * * * *** * **
29713139 ATCTGCTCTACTACT-TCTTAGGGAGAAAAGATCGGTAATTTTCAACCT-TCTCCACTGTTG-CT
1 ACCTATTCCACTGCTGAC-CAGGGAGATAGGAT-TACAATCTTCAACCTAT-TCCACTACTGAC-
*
29713201 AAGGGAGATAGGA-TTCACAATCTTCA
62 CAGGGAGATAGGACTT-ACAATCTTCA
* *
29713227 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTTCACTACCGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
* * **** *
29713292 GGAGATAAGTC-TAGTGGCTTAA
65 GGAGATAGGACTTACAATCTTCA
* * * * * * ** * * ** * *
29713314 ATCTGCTTCC-CTACT-ACCTCGGGAAGATAAGATTCGCCGTCTTCGATCTGCTGCACTGCTG-C
1 ACCT-ATTCCACTGCTGACC-AGGG-AGATAGGATT-ACAATCTTCAACCTATTCCACTACTGAC
* * *
29713376 TTAGGGAGATAAGATCTGT--AATTTTCA
62 -CAGGGAGATAGGA-CT-TACAATCTTCA
* * * * * *
29713403 ACCTACTT-CATTACTG-CTCAGGGAGATAGAATTCACAATCTTCAGCCTATTCTACTGCTGACC
1 ACCTA-TTCCACTGCTGAC-CAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTACTGACC
*
29713466 AGGGAGATAGGA-TTCACAATCTTTA
63 AGGGAGATAGGACTT-ACAATCTTCA
* *
29713491 ACCTATTCCACTGCCGACCAGGGAGATAGGATT-C-A---T----CTATTCCACTACTAACCAGG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGATTACAATCTTCAACCTATTCCACTACTGACCAGG
29713547 GAGATAGGACTTACAATCTTCA
66 GAGATAGGACTTACAATCTTCA
* * * *
29713569 ACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCGCTGCTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTACTGACCAG
29713634 GGAGATAGGACTTACAATCTTCA
65 GGAGATAGGACTTACAATCTTCA
* *
29713657 ACCTGTTCCACTACTGACCAGGGAGATA
1 ACCTATTCCACTGCTGACCAGGGAGATA
29713685 AGGCTAGTGG
Statistics
Matches: 5616, Mismatches: 1662, Indels: 1302
0.65 0.19 0.15
Matches are distributed among these distances:
76 2 0.00
77 38 0.01
78 1150 0.20
79 111 0.02
80 10 0.00
81 19 0.00
82 7 0.00
83 3 0.00
84 6 0.00
85 24 0.00
86 95 0.02
87 546 0.10
88 3065 0.55
89 438 0.08
90 31 0.01
91 10 0.00
93 1 0.00
94 7 0.00
95 36 0.01
96 16 0.00
97 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (87 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGATTACAATCTTCAACCTATTCCACTACTGACCAGG
GAGATAGGACTTACAATCTTCA
Found at i:29705922 original size:420 final size:423
Alignment explanation
Indices: 29705254--29706213 Score: 1279
Period size: 420 Copynumber: 2.3 Consensus size: 423
29705244 ATCTGTAATT
* * * * * * * * * *
29705254 TTCAACCTACTCCACTGCT-GCTCAGGGAGAGAGGATTCACAATCTTTAACATATTACACTGCTG
1 TTCAACCTATTCCACTACTAAC-CAGGGAAATAGGACTCACAATCTTCAACCTATTCCACTACTG
* * * *
29705318 ACCAGGGAGATAAGATTCATAATCTTCAACCTATTCCACTACTGA-CAAGGGAGATAGGA-TT-C
65 ACCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACTACTGACCAA-GGAGATAGGACTTAC
* * **
29705380 -A-C--CTA--T-TT-CATTGTTGACCAGGGAGATAAGGCTACTGGCTTAAATTTGCTTCCCTAC
129 AATCTTCAACCTGTTCCACTACTGACCAGGGAGATAAGGCTACTGGCTTAAATTTGCTTCCCTAC
* *
29705437 TACCTTGGGAAGATAAGAATCGCTGTCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGATCT
194 TACCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCT
* *
29705502 GTAATTTTCAACCTACT-TCACCGCTGCTCAGGGAGATAGAATTCACAATCTTCAGCCTATTCTA
259 GTAATTTTCAACCTACTCT-ACCGCTGCTCAGGGAGATAGAATTCACAATCTTCAACCTATTCCA
*
29705566 CTGCTGACCAGGGAGATAGGATTCACAATCTTCGACCTATTCCACTGCTGACCAGGGAGATAGGA
323 CTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGA
*
29705631 TTCACCTATTCCACTGATGACCAGGGAGATAGG-A-
388 TTCACCTATTCCACTGATAACCAGGGAGATAGGAAC
* * *
29705665 TTC-ACCTATTCCACTGCTAACCAGGGAAATAGGACTTACAATCTTCAACCTATTCCACTATTGA
1 TTCAACCTATTCCACTACTAACCAGGGAAATAGGACTCACAATCTTCAACCTATTCCACTACTGA
* *
29705729 CCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACTGCTGGCCAAGGAGATAGGACTTACAA
66 CCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACTACTGACCAAGGAGATAGGACTTACAA
*
29705794 TCTTCAACCTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTA
131 TCTTCAACCTGTTCCACTACTGACCAGGGAGATAAGGCTACTGGCTTAAATTTGCTTCCCTACTA
* *
29705859 CCTTGGGAAGATAAGATTCGCCGTCTTCTATCTGCTCCACTACTACTTTAG-GAGATAAGATCTG
196 CCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTAC-TTAGAGAGATAAGATCTG
* * *
29705923 TAATTTTCAACCTACTCTACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATT
260 TAATTTTCAACCTACTCTACCGCTGCTCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACT
*
29705988 GCTGACCAGGGAGATAGGATTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATT
325 GCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATT
*
29706053 CACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATC
390 CACCTATTCCACTGATAACCAGGGAGATAGG------AA-C
* * * * *
29706094 TTCAACCTATTCCACTATTGATCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGA
1 TTCAACCTATTCCACTACTAACCAGGGAAATAGGACTCACAATCTTCAACCTATTCCACTACTGA
* * * * *
29706159 CCAGGGAGATTGGACTTACAATCTTCAACCTGTTCCACTACTGACCAGGGAGATA
66 CCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACTACTGACCAAGGAGATA
29706214 AGGCTAGTGG
Statistics
Matches: 475, Mismatches: 50, Indels: 29
0.86 0.09 0.05
Matches are distributed among these distances:
410 96 0.20
411 9 0.02
412 1 0.00
413 1 0.00
414 1 0.00
416 2 0.00
418 1 0.00
419 2 0.00
420 252 0.53
421 5 0.01
427 1 0.00
429 3 0.01
430 101 0.21
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (423 bp):
TTCAACCTATTCCACTACTAACCAGGGAAATAGGACTCACAATCTTCAACCTATTCCACTACTGA
CCAGGGAGATAGGACTCACAACCTTCAACCTATTCCACTACTGACCAAGGAGATAGGACTTACAA
TCTTCAACCTGTTCCACTACTGACCAGGGAGATAAGGCTACTGGCTTAAATTTGCTTCCCTACTA
CCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGT
AATTTTCAACCTACTCTACCGCTGCTCAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTG
CTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTC
ACCTATTCCACTGATAACCAGGGAGATAGGAAC
Found at i:29706063 original size:34 final size:34
Alignment explanation
Indices: 29706020--29706084 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
29706010 ACAATCTTCA
*
29706020 ACCTATTCCACTGCTGACCAGGGAGATAGGATTC
1 ACCTATTCCACTGCTAACCAGGGAGATAGGATTC
29706054 ACCTATTCCACTGCTAACCAGGGAGATAGGA
1 ACCTATTCCACTGCTAACCAGGGAGATAGGA
29706085 CTTACAATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (34 bp):
ACCTATTCCACTGCTAACCAGGGAGATAGGATTC
Found at i:29706105 original size:78 final size:81
Alignment explanation
Indices: 29705971--29706213 Score: 321
Period size: 78 Copynumber: 3.0 Consensus size: 81
29705961 GATTCACAAT
* * *
29705971 CTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTTACAATCTTCAACCTATTCCACTGCTG
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTG
29706036 ACCAGGGAGATAGG-A
66 ACCAGGGAGATAGGAA
* *
29706051 -TTC-ACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTATTG
1 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTG
*
29706114 ATCAGGGAGATAGGACTCACAA
66 ACCAGGGAGATAGG------AA
* * *
29706136 TCTTCAACCTATTCCACTCCTGACCAGGGAGATTGGACTTACAATCTTCAACCTGTTCCACTACT
1 -CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACT
29706201 GACCAGGGAGATA
65 GACCAGGGAGATA
29706214 AGGCTAGTGG
Statistics
Matches: 141, Mismatches: 12, Indels: 12
0.85 0.07 0.07
Matches are distributed among these distances:
78 68 0.48
79 3 0.02
85 1 0.01
87 3 0.02
88 66 0.47
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (81 bp):
CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTG
ACCAGGGAGATAGGAA
Found at i:29706126 original size:386 final size:385
Alignment explanation
Indices: 29705552--29706511 Score: 1429
Period size: 386 Copynumber: 2.5 Consensus size: 385
29705542 ATTCACAATC
* * *
29705552 TTCAGCCTATTCTACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCGACCTATTCCACTGCTG
1 TTCAACCTACTCTACTGCTG-CTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTG
*
29705616 ACCAGGGAGATAGG------A--TTC-ACCTATTCCACTGATGACCAGGGAGATAGGATTCACCT
65 ACCAGGGAGATAGGATTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCT
29705672 ATTCCACTGCTAACCAGGGAAATAGGACTTACAATCTTCAACCTATTCCACTATTGACCAGGGAG
130 ATTCCACTGCTAACCAGGGAAATAGGACTTACAATCTTCAACCTATTCCACTATTGACCAGGGAG
* *
29705737 ATAGGACTCACAACCTTCAACCTATTCCACTGCTGGCCAAGGAGATAGGACTTACAATCTTCAAC
195 ATAGGACTCACAACCTTCAACCTATTCCACTCCTGACCAAGGAGATAGGACTTACAATCTTCAAC
* *
29705802 CTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTACCTTGGGA
260 CTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAA
* *
29705867 AGATAAGATTCGCCGTCTTCTATCTGCTCCACTACTACTTTAG-GAGATAAGATCTGTAATT
325 AGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTAC-TTAGAGAGATAAGATCTGTAATT
*
29705928 TTCAACCTACTCTACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGA
1 TTCAACCTACTCTACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
29705993 CCAGGGAGATAGGATTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCT
66 CCAGGGAGATAGGA-TTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCT
* *
29706058 ATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTATTGATCAGGGAG
130 ATTCCACTGCTAACCAGGGAAATAGGACTTACAATCTTCAACCTATTCCACTATTGACCAGGGAG
* * *
29706123 ATAGGACTCACAATCTTCAACCTATTCCACTCCTGACCAGGGAGATTGGACTTACAATCTTCAAC
195 ATAGGACTCACAACCTTCAACCTATTCCACTCCTGACCAAGGAGATAGGACTTACAATCTTCAAC
*
29706188 CTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACATCTGCTTCCCTACTACCTTGGAA
260 CTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAA
* * * * *
29706253 AGATAAGAATCGCCGTCTTCGATTTGGTCTACTACTGCTTAGAGAGATAAGATTTGTAATT
325 AGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGTAATT
* * * *
29706314 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTCTTACACTACTGA
1 TTCAACCTACTCTACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
* * * * * * *
29706379 CCAGGCAGATAGGATTCACAATCTTGAACCTATTCCACTACTGGCAAGGGACATAGGATTGACCT
66 CCAGGGAGATAGGATT-ACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCT
* * * * * * * * *
29706444 ATTTCACTACTGACTAGGCATATATGACTTACAATCTTCAACCTATTCCACTACTGACCACGGAG
130 ATTCCACTGCTAACCAGGGAAATAGGACTTACAATCTTCAACCTATTCCACTATTGACCAGGGAG
29706509 ATA
195 ATA
29706512 AGGTTAGTGG
Statistics
Matches: 527, Mismatches: 44, Indels: 16
0.90 0.07 0.03
Matches are distributed among these distances:
375 1 0.00
376 72 0.14
383 1 0.00
385 9 0.02
386 444 0.84
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (385 bp):
TTCAACCTACTCTACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
CCAGGGAGATAGGATTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACCTA
TTCCACTGCTAACCAGGGAAATAGGACTTACAATCTTCAACCTATTCCACTATTGACCAGGGAGA
TAGGACTCACAACCTTCAACCTATTCCACTCCTGACCAAGGAGATAGGACTTACAATCTTCAACC
TGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAA
GATAAGAATCGCCGTCTTCGATCTGCTCCACTACTACTTAGAGAGATAAGATCTGTAATT
Found at i:29706320 original size:298 final size:288
Alignment explanation
Indices: 29705998--29706809 Score: 901
Period size: 298 Copynumber: 2.7 Consensus size: 288
29705988 GCTGACCAGG
* ** * *
29705998 GAGATAGGATTTACAATCTTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACCTATTC
1 GAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCACCTATTC
* * *
29706062 CACTGCTAACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTATTGATCAGGGAGATA
65 CACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTACTGACCAGGGAGATA
* *
29706126 GGACTCACAATCTTCAACCTATTCCACTCCTGACCAGGGAGATTGGACTTACAATCTTCAACCTG
129 GG-------A--TTC-ACCTATTCCACTACTGACCAGGGAGATTGGACTTACAATCTTCAACCTA
*
29706191 TTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACATCTGCTTCCCTACTACCTTGGAAAGA
184 TTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGA
* * *
29706256 TAAGAATCGCCGTCTTCGATTTGGTCTACTACTGCTTAGA
249 TAAGAATCGCCGTCTTCGATCTGCTCCACTACTGCTTAGA
29706296 GAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTC
1 GAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCAC---C-T-
* * * * * *
29706361 AACCTCTTACACTACTGACCAGGCAGATAGGATTCACAATCTTGAACCTATTCCACTACTGGCAA
61 -A----TTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCA
* * * * * *
29706426 GGGACATAGGATTGACCTATTTCACTACTGACTAGGCATATAT-GACTTACAATCTTCAACCTAT
121 GGGAGATAGGATTCACCTATTCCACTACTGACCAGGGAGAT-TGGACTTACAATCTTCAACCTAT
* * * *
29706490 TCCACTACTGACCACGGAGATAAGGTTAGTGGCTTAAATCTTCTTCCCTACTACCTTGGGAAGAT
185 TCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGAT
* * *
29706555 AAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGG
250 AAGAATCGCCGTCTTCGATCTGCTCCACTACTGCTTAGA
* *
29706594 GAGATAAGATCTGTAATTTTCAACCTACTGCACTGCTGCTCAGGGAGATAGGATTCACAATCTTA
1 GAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGA-T-----TC---
* * *
29706659 AACCTATTCCATTGCTGACCAGGGAGATAGGATTCATAATCTTCAACCTATTCCACTGCTGACCA
57 -ACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCA
* * *
29706724 AGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATT
121 GGGAGATAGGATTCACCTATTCCACTACTGACCAGGGAGATTGGACTTACAATCTTCAACCTATT
* ** *
29706789 TCACTGTTAACCAGGGAGATA
186 CCACTACTGACCAGGGAGATA
29706810 CGACTCATAA
Statistics
Matches: 432, Mismatches: 58, Indels: 48
0.80 0.11 0.09
Matches are distributed among these distances:
297 1 0.00
298 358 0.83
299 4 0.01
301 2 0.00
302 2 0.00
304 4 0.01
305 1 0.00
307 2 0.00
308 58 0.13
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (288 bp):
GAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACCTATTCC
ACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGG
ATTCACCTATTCCACTACTGACCAGGGAGATTGGACTTACAATCTTCAACCTATTCCACTACTGA
CCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCG
TCTTCGATCTGCTCCACTACTGCTTAGA
Found at i:29706604 original size:684 final size:682
Alignment explanation
Indices: 29705785--29707379 Score: 2532
Period size: 684 Copynumber: 2.3 Consensus size: 682
29705775 AAGGAGATAG
*
29705785 GACTTACAATCTTCAACCTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAAT-TTGC
1 GACTTACAATCTTCAACCTATTCCACTACTGACCA-GGAGATAAGGCTAGTGGCTTAAATCTT-C
* *
29705849 TTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCTATCTGCTCCACTACTACTTTAGGAGA
64 TTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTGGGAGA
29705914 TAAGATCTGTAATTTTCAACCTACTCTACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACC
129 TAAGATCTGTAATTTTCAACCTACTC-ACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACC
* *
29705979 TATTCCATTGCTGACCAGGGAGATAGGATTTACAATCTTCAACCTATTCCACTGCTGACCAGGGA
193 TATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGA
29706044 GATAGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCAC
258 GATAGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCAC
* * * *
29706109 TATTGATCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTCCTGACCAGGGAGATTGGAC
323 TATTAACCAGGGAGATACGACTCACAATCTTCAACCTATTCCACTCCTGACCAGGGAGATAGGAC
* * * *
29706174 TTACAATCTTCAACCTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACATCTGCTTCC
388 TTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGACTAGTGGCTTAAATCTCCTTCC
* *
29706239 CTACTACCTTGGAAAGATAAGAATCGCCGTCTTCGATTTGGTCTACTACTGCTTAGAGAGATAAG
453 CTACTACCTTGGAAAGATAAGAATCGCCGTCTTCGATCTGCTCTACTACTGCTTAGAGAGATAAG
* * * * *
29706304 ATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTCTT
518 ATCTGTAATTTTCAACCTACTCCACTACTGCTCAGGGAGATAGAATTCACAATCTACAACCTATT
* * *
29706369 ACACTACTGACCAG-GCAGATAGGATTCACAATCTTGAACCTATTCCACTACTGGCAAGGGACAT
583 ACACTACTGACCAGAG-AGATAGGATTCACAATCTTCAACCTATTCCACTACTGACAAGGGAAAT
* * *
29706433 AGGATTGACCTATTTCACTACT-GACTAGGCATATAT
647 AGGATTCACCTATTTCACTACTAG-CCAGGCAAATAT
*
29706469 GACTTACAATCTTCAACCTATTCCACTACTGACCACGGAGATAAGGTTAGTGGCTTAAATCTTCT
1 GACTTACAATCTTCAACCTATTCCACTACTGACCA-GGAGATAAGGCTAGTGGCTTAAATCTTCT
*
29706534 TCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGAT
65 TCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTGGGAGAT
*
29706599 AAGATCTGTAATTTTCAACCTACTGCACTGCTGCTCAGGGAGATAGGATTCACAATCTTAAACCT
130 AAGATCTGTAATTTTCAACCTACT-CACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCT
*
29706664 ATTCCATTGCTGACCAGGGAGATAGGATTCATAATCTTCAACCTATTCCACTGCTGACCAAGGAG
194 ATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAG
* *
29706729 ATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTTCACT
259 ATAGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACT
* * * *
29706794 GTTAACCAGGGAGATACGACTCATAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATT
324 ATTAACCAGGGAGATACGACTCACAATCTTCAACCTATTCCACTCCTGACCAGGGAGATAGGACT
*
29706859 TACAATCTTCAACCTATTCCACTATTGACCAGGGAGATAAGACTAGTGGCTTAAATCTCCTTCCC
389 TACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGACTAGTGGCTTAAATCTCCTTCCC
* * *
29706924 TACTACCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCTACTACTGCTTTGGGAGATAAGA
454 TACTACCTTGGAAAGATAAGAATCGCCGTCTTCGATCTGCTCTACTACTGCTTAGAGAGATAAGA
* *
29706989 TCTGTAATTTTCAACTTACTCCACTACTGTTCAGGGAGATAGAATTCACAATCTACAACCTATTA
519 TCTGTAATTTTCAACCTACTCCACTACTGCTCAGGGAGATAGAATTCACAATCTACAACCTATTA
* * *
29707054 CACTGCTGACCAGAGAGATAGGATTCACAATCTTCAATCTATTCCACTATTGACAAGGGAAATAG
584 CACTACTGACCAGAGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACAAGGGAAATAG
* * *
29707119 GCTTCACCTATTTCACTGCTAGCCAGGGAAATAT
649 GATTCACCTATTTCACTACTAGCCAGGCAAATAT
* * *
29707153 GACTTACAATATTCAACCTATTCCACTACTGACCAGAGAGATAAGACTAGTGGTTTAAATCTTCT
1 GACTTACAATCTTCAACCTATTCCACTACTGACCAG-GAGATAAGGCTAGTGGCTTAAATCTTCT
* * * *
29707218 TCCCTACTACCTTGGGAAGATAAAATTCGCCATCTTCGATCTACTCCACTACTACTTTGGGAAAT
65 TCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTGGGAGAT
* * *
29707283 AAGATCTGTGATTTTCAACCTACTCCACCGCTGCTTAGGGAGATAGGATTCACAATCTTCAACCT
130 AAGATCTGTAATTTTCAACCTACT-CACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCT
* *
29707348 ACTT-CACTGTTGACCAGGGAGATAGGATTCAC
194 A-TTCCATTGCTGACCAGGGAGATAGGATTCAC
29707380 CTATCCCACT
Statistics
Matches: 839, Mismatches: 66, Indels: 12
0.91 0.07 0.01
Matches are distributed among these distances:
683 1 0.00
684 831 0.99
685 7 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.29
Consensus pattern (682 bp):
GACTTACAATCTTCAACCTATTCCACTACTGACCAGGAGATAAGGCTAGTGGCTTAAATCTTCTT
CCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTTGGGAGATA
AGATCTGTAATTTTCAACCTACTCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTAT
TCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGAT
AGGATTCACCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTAT
TAACCAGGGAGATACGACTCACAATCTTCAACCTATTCCACTCCTGACCAGGGAGATAGGACTTA
CAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTA
CTACCTTGGAAAGATAAGAATCGCCGTCTTCGATCTGCTCTACTACTGCTTAGAGAGATAAGATC
TGTAATTTTCAACCTACTCCACTACTGCTCAGGGAGATAGAATTCACAATCTACAACCTATTACA
CTACTGACCAGAGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACAAGGGAAATAGGA
TTCACCTATTTCACTACTAGCCAGGCAAATAT
Found at i:29706706 original size:386 final size:383
Alignment explanation
Indices: 29706362--29707179 Score: 1064
Period size: 386 Copynumber: 2.1 Consensus size: 383
29706352 ACAATCTTCA
* * *
29706362 ACCTCTTACACTACTGACCAGGCAGATAGGA-TTCACAATCTTGAACCTATTCCAC-T-A-CTGG
1 ACCTATTACACTACTGACCAGGCAGATAGGACTT-ACAATCTTCAACCTATTCCACTTAACCAGG
** * * * * * *
29706423 CA-A-GGGA-CATAGGATT-GACCTATTTCACTACTGACTAGGCATATATGACTTACAATCTTCA
65 CAGATACGACCATAAGATTCAACCTATTCCACTACTGACCAGGCAGATAGGACTTACAATCTTCA
** *
29706484 ACCTATTCCACTACTGACCACGGAGATAAGGTTAGTGGCTTAAATCTTCTTCCCTACTACCTTGG
130 ACCTATTCCACTACTGACCACGGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTACTACCTTGG
*
29706549 GAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTTT
195 GAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTTT
* * * * *
29706614 CAACCTACTGCACTGCTGCTCAGGGAGATAGGATTCACAATCTTA-AACCTATTCCATTGCTGAC
260 CAACCTACTCCACTACTGCTCAGGGAGATAGAATTCACAATC-TACAACCTATTACACTGCTGAC
*
29706678 CAGGGAGATAGGATTCATAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTC
324 CAGAGAGATAGGATTCATAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTC
* * * *
29706738 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTTCACTGTTAACCAG
1 ACCTATTACACTACTGACCAGGCAGATAGGACTTACAATCTTCAACCTATTCCAC--TTAACCAG
* ** * * *
29706803 GGAGATACGACTCATAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTTACAATCTT
64 GCAGATACGAC-CATAAGATTCAACCTATTCCACTACTGACCAGGCAGATAGGACTTACAATCTT
* *
29706868 CAACCTATTCCACTATTGACCAGGGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTACTACCTT
128 CAACCTATTCCACTACTGACCACGGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTACTACCTT
*
29706933 GGGAAGATAAGAATCGCCGTCTTCGATCTGCTCTACTACTGCTTTGGGAGATAAGATCTGTAATT
193 GGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATT
* *
29706998 TTCAACTTACTCCACTACTGTTCAGGGAGATAGAATTCACAATCTACAACCTATTACACTGCTGA
258 TTCAACCTACTCCACTACTGCTCAGGGAGATAGAATTCACAATCTACAACCTATTACACTGCTGA
* * ** * *
29707063 CCAGAGAGATAGGATTCACAATCTTCAATCTATTCCACTATTGA-CAAGGGAAATAGGCTTC
323 CCAGAGAGATAGGATTCATAATCTTCAACCTATTCCACTGCTGACCAA-GGAGATAGGATTC
* * * * * *
29707124 ACCTATTTCACTGCT-AGCCAGGGAAATATGACTTACAATATTCAACCTATTCCACT
1 ACCTATTACACTACTGA-CCAGGCAGATAGGACTTACAATCTTCAACCTATTCCACT
29707180 ACTGACCAGA
Statistics
Matches: 381, Mismatches: 47, Indels: 20
0.85 0.10 0.04
Matches are distributed among these distances:
376 46 0.12
377 2 0.01
379 1 0.00
380 1 0.00
381 4 0.01
382 1 0.00
383 2 0.01
384 1 0.00
385 12 0.03
386 311 0.82
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (383 bp):
ACCTATTACACTACTGACCAGGCAGATAGGACTTACAATCTTCAACCTATTCCACTTAACCAGGC
AGATACGACCATAAGATTCAACCTATTCCACTACTGACCAGGCAGATAGGACTTACAATCTTCAA
CCTATTCCACTACTGACCACGGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGG
AAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTTTC
AACCTACTCCACTACTGCTCAGGGAGATAGAATTCACAATCTACAACCTATTACACTGCTGACCA
GAGAGATAGGATTCATAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTC
Found at i:29706747 original size:34 final size:34
Alignment explanation
Indices: 29706704--29706768 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
29706694 ATAATCTTCA
29706704 ACCTATTCCACTGCTGACCAAGGAGATAGGATTC
1 ACCTATTCCACTGCTGACCAAGGAGATAGGATTC
*
29706738 ACCTATTCCACTGCTGACCAGGGAGATAGGA
1 ACCTATTCCACTGCTGACCAAGGAGATAGGA
29706769 CTTACAATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (34 bp):
ACCTATTCCACTGCTGACCAAGGAGATAGGATTC
Found at i:29706833 original size:122 final size:122
Alignment explanation
Indices: 29706624--29706858 Score: 366
Period size: 122 Copynumber: 1.9 Consensus size: 122
29706614 CAACCTACTG
* * *
29706624 CACTGCTGCTCAGGGAGATAGGATTCACAATCTTAAACCTATTCCATTGCTGACCAGGGAGATAG
1 CACTGCTGCTCAGGGAGATAGGATTCACAATCTTAAACCTATTCCACTGCTAACCAGGGAGATAC
*
29706689 GATTCATAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTC
66 GACTCATAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTC
* * *
29706746 CACTGCTGAC-CAGGGAGATAGGACTT-ACAATCTTCAACCTATTTCACTGTTAACCAGGGAGAT
1 CACTGCTG-CTCAGGGAGATAGGA-TTCACAATCTTAAACCTATTCCACTGCTAACCAGGGAGAT
*
29706809 ACGACTCATAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATT
64 ACGACTCATAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATT
29706859 TACAATCTTC
Statistics
Matches: 103, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
122 100 0.97
123 3 0.03
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (122 bp):
CACTGCTGCTCAGGGAGATAGGATTCACAATCTTAAACCTATTCCACTGCTAACCAGGGAGATAC
GACTCATAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTC
Found at i:29706896 original size:298 final size:297
Alignment explanation
Indices: 29706142--29706900 Score: 751
Period size: 298 Copynumber: 2.5 Consensus size: 297
29706132 ACAATCTTCA
* * * * * *
29706142 ACCTATTCCACTCCTGACCAGGGAGATTGGACTTACAATCTTCAACCTGTTCCACTACTGACCAG
1 ACCTATTCCACTACTGACCAGGCAGATAGGACTTACAATCTTCAACCTATTCCACTACTAACCAC
* * * * * * * **
29706207 GGAGATAAGGC-TAGTGGCTTACAT-CTGCTTCCCTACTACCTTGGAAAGATAAGAATCGCCGTC
66 GGAGATAA-GCTTAAT-GCTTAAATCCT-ATTCCCTACTACCTAGGGAAGATAAGATTCACAATC
* ** ** * * * *
29706270 TTCGATTTGGTCTACTACTGCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGC
128 TTCAACCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGC
* *
29706335 TCAGGGAGATAGGATTCACAATCTTCAACCTCTTACACTACTGACCAGGCAGATAGGATTCACAA
193 TCAGGGAGATAGGATTCACAATCTTAAACCTATTACACTACTGACCAGGCAGATAGGATTCACAA
* * *
29706400 TCTTGAACCTATTCCACTACTGGCAAGGGACATAGGATTG
258 TCTTCAACCTATTCCACTACTGCCAAGGGACATAGGATTC
* * * * *
29706440 ACCTATTTCACTACTGACTAGGCATATATGACTTACAATCTTCAACCTATTCCACTACTGACCAC
1 ACCTATTCCACTACTGACCAGGCAGATAGGACTTACAATCTTCAACCTATTCCACTACTAACCAC
* * * * * * **
29706505 GGAGATAAGGTTAGTGGCTTAAATCTTCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTT
66 GGAGATAAGCTTAAT-GCTTAAATCCTATTCCCTACTACCTAGGGAAGATAAGATTCACAATCTT
* * * ** *
29706570 CGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTACTGCACTGCTGCTC
130 CAACCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTC
* * * * *
29706635 AGGGAGATAGGATTCACAATCTTAAACCTATTCCATTGCTGACCAGGGAGATAGGATTCATAATC
195 AGGGAGATAGGATTCACAATCTTAAACCTATTACACTACTGACCAGGCAGATAGGATTCACAATC
* *
29706700 TTCAACCTATTCCACTGCTGACCAA-GGAGATAGGATTC
260 TTCAACCTATTCCACTACTG-CCAAGGGACATAGGATTC
* * * ** *
29706738 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTTCACTGTTAACCAG
1 ACCTATTCCACTACTGACCAGGCAGATAGGACTTACAATCTTCAACCTATTCCACTACTAACCAC
* * * * *
29706803 GGAGATACGACTCATAAT-CTTCAA-CCTATTCCACTGCTGACC-AGGG-AGATAGGATTTACAA
66 GGAGATAAG-CT--TAATGCTTAAATCCTATTCC-CTACT-ACCTAGGGAAGATAAGATTCACAA
* *
29706864 TCTTCAACCTATTCCACTATTGAC-CAGGGAGATAAGA
126 TCTTCAACCTACTCCACTACTG-CTCAGGGAGATAAGA
29706901 CTAGTGGCTT
Statistics
Matches: 388, Mismatches: 64, Indels: 18
0.83 0.14 0.04
Matches are distributed among these distances:
297 1 0.00
298 363 0.94
299 18 0.05
300 3 0.01
301 3 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (297 bp):
ACCTATTCCACTACTGACCAGGCAGATAGGACTTACAATCTTCAACCTATTCCACTACTAACCAC
GGAGATAAGCTTAATGCTTAAATCCTATTCCCTACTACCTAGGGAAGATAAGATTCACAATCTTC
AACCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTCA
GGGAGATAGGATTCACAATCTTAAACCTATTACACTACTGACCAGGCAGATAGGATTCACAATCT
TCAACCTATTCCACTACTGCCAAGGGACATAGGATTC
Found at i:29706984 original size:298 final size:292
Alignment explanation
Indices: 29706680--29707310 Score: 702
Period size: 298 Copynumber: 2.1 Consensus size: 292
29706670 TTGCTGACCA
* * * *
29706680 GGGAGATAGGAT-TCATAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAG-GAT-T-C-AC
1 GGGAGATAAGATCT-ATAATCTTCAACCTACTCCACTACTGACCAAGGAGATAGAAATCTACAAC
* * * * *
29706740 CTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTTCACTGTTAACCAGG
65 CTATTACACTGCTGACCAGAGAGATAGGA-TTCACAATCTTCAACCTATTCCACTATTAA-CAAG
* * * *
29706804 GAGATACGACTCATAATCTTCAACCTATTCCACTGCT-GACCAGGGAGATAGGATTTACAATCTT
128 G-G--A--A---ATAAGCTTC-ACCTATTCCACTGCTAG-CCAGGGAAATAGGACTTACAATATT
* *
29706868 CAACCTATTCCACTATTGACCAGGGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTACTACCTT
183 CAACCTATTCCACTACTGACCAGAGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTACTACCTT
* * * *
29706933 GGGAAGATAAGAA-TCGCCGTCTTCGATCTGCTCTACTACTGCTTT
248 GGGAAGATAA-AATTCGCCATCTTCGATCTACTCCACTACTACTTT
* * * ** *
29706978 GGGAGATAAGATCTGTAATTTTCAACTTACTCCACTACTGTTCAGGGAGATAGAATTCACAATCT
1 GGGAGATAAGATCTATAATCTTCAACCTACTCCACTACTGACCAAGGAGATAG-----A-AATCT
* *
29707043 ACAACCTATTACACTGCTGACCAGAGAGATAGGATTCACAATCTTCAATCTATTCCACTATTGAC
60 ACAACCTATTACACTGCTGACCAGAGAGATAGGATTCACAATCTTCAACCTATTCCACTATTAAC
* * *
29707108 AAGGGAAATAGGCTTCACCTATTTCACTGCTAGCCAGGGAAATATGACTTACAATATTCAACCTA
125 AAGGGAAATAAGCTTCACCTATTCCACTGCTAGCCAGGGAAATAGGACTTACAATATTCAACCTA
* *
29707173 TTCCACTACTGACCAGAGAGATAAGACTAGTGGTTTAAATCTTCTTCCCTACTACCTTGGGAAGA
190 TTCCACTACTGACCAGAGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGA
29707238 TAAAATTCGCCATCTTCGATCTACTCCACTACTACTTT
255 TAAAATTCGCCATCTTCGATCTACTCCACTACTACTTT
* * * *
29707276 GGGAAATAAGATCTGTGATTTTCAACCTACTCCAC
1 GGGAGATAAGATCTATAATCTTCAACCTACTCCAC
29707311 CGCTGCTTAG
Statistics
Matches: 284, Mismatches: 35, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
297 2 0.01
298 208 0.73
299 9 0.03
302 1 0.00
304 1 0.00
305 2 0.01
306 2 0.01
307 7 0.02
308 52 0.18
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (292 bp):
GGGAGATAAGATCTATAATCTTCAACCTACTCCACTACTGACCAAGGAGATAGAAATCTACAACC
TATTACACTGCTGACCAGAGAGATAGGATTCACAATCTTCAACCTATTCCACTATTAACAAGGGA
AATAAGCTTCACCTATTCCACTGCTAGCCAGGGAAATAGGACTTACAATATTCAACCTATTCCAC
TACTGACCAGAGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAAAT
TCGCCATCTTCGATCTACTCCACTACTACTTT
Found at i:29707268 original size:386 final size:386
Alignment explanation
Indices: 29706474--29707969 Score: 1122
Period size: 386 Copynumber: 3.9 Consensus size: 386
29706464 TATATGACTT
* ** *
29706474 ACAATCTTCAACCTATTCCACTACTGACCACGGAGATAAGGTTAGTGGCTTAAATCTTCTTCCCT
1 ACAATCTTCAACCTACTCCACTACTGACCACGGAGATAAGACTAGTGGCTTAAATCTCCTTCCCT
*
29706539 ACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGAT
66 ACTACCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGAT
* * * *
29706604 CTGTAATTTTCAACCTACTGCACTGCTGCTCAGGGAGATAGGATTCACAATCTTAAACCTATTCC
131 CTGTAATTTTCAACCTACTCCACTACTGCTCAGGGAGATAGAATTCACAATCTTAAACCTATTAC
* * * * *
29706669 ATTGCTGACCAGGGAGATAGGATTCATAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGG
196 ACTGCTGACCAGAGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAAATAGG
* * * **
29706734 ATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTTCACTGTTAA
261 ATTCACCTATTCCACTGCTGACCAGGGAAATAGGACTTACAATATTCAACCTATTCCACTACTAA
* * * * ** *
29706799 CCAGGGAGATACGACTCATAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTT
326 CCAGAGAGATAAGACTCATAATCTTAAACCTATTCCACTACTGACCAGGGAGATAAAATTC
* * *
29706860 ACAATCTTCAACCTATTCCACTATTGACCAGGGAGATAAGACTAGTGGCTTAAATCTCCTTCCCT
1 ACAATCTTCAACCTACTCCACTACTGACCACGGAGATAAGACTAGTGGCTTAAATCTCCTTCCCT
*
29706925 ACTACCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCTACTACTGCTTTGGGAGATAAGAT
66 ACTACCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGAT
* *
29706990 CTGTAATTTTCAACTTACTCCACTACTGTTCAGGGAGATAGAATTCACAATC-TACAACCTATTA
131 CTGTAATTTTCAACCTACTCCACTACTGCTCAGGGAGATAGAATTCACAATCTTA-AACCTATTA
* *
29707054 CACTGCTGACCAGAGAGATAGGATTCACAATCTTCAATCTATTCCACTATTGA-CAAGGGAAATA
195 CACTGCTGACCAGAGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAA-GGAAATA
* * *
29707118 GGCTTCACCTATTTCACTGCT-AGCCAGGGAAATATGACTTACAATATTCAACCTATTCCACTAC
259 GGATTCACCTATTCCACTGCTGA-CCAGGGAAATAGGACTTACAATATTCAACCTATTCCACTAC
* ** * * *
29707182 TGACCAGAGAGATAAGACT-AGTGGT-TTAAATCTTCTTCC-CTACT-ACCTTGGGAAGATAAAA
323 TAACCAGAGAGATAAGACTCA-TAATCTTAAA-CCTATTCCACTACTGACC-AGGG-AGATAAAA
29707243 TTC
384 TTC
* * * * *** * ** * * *
29707246 GCCATCTTCGATCTACTCCACTACT-ACTTTGGGAAATAAGATCT-GTGATTTTCAACCTAC-TC
1 ACAATCTTCAACCTACTCCACTACTGAC-CACGGAGATAAGA-CTAGTG-GCTTAAATCTCCTTC
** * * * * ** * * * * ** **
29707308 CACCGCT-GCTTAGGG-AGATAGGATTCACAATCTTCAACCTACTTCACTGTTGAC-CAGGGAGA
63 C-CTACTACCTT-GGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTG-CTTTGGGAGA
* * *
29707370 T-AG----G--A--TTC-ACCTA-TCCCACTACTAAC-CAGGGAGATAAGACTT-ACAATCTTCA
125 TAAGATCTGTAATTTTCAACCTACT-CCACTACT-GCTCAGGGAGAT-AGAATTCACAATCTTAA
*** * * * * * *** * *
29707422 AGAAATTCCACTACTGACCAGGGAGACAAGG-CT-AGTGGT-TTAAATCTACTTCC-CTACT-AC
187 ACCTATTACACTGCTGACCAGAGAGA-TAGGATTCA-CAATCTTCAACCTA-TTCCACTACTGAC
** * * * * * * * * *
29707482 CTTTGAAAGATAAGATTCGCCATTTTCGATCTACTCTACTATTGCTTAGGGAGATA--ACTTTTG
249 C-AAGGAA-ATAGGATTCACC-TATTCCA-CTGCT-GAC-----C--AGGGAAATAGGAC--TTA
* * * * * * * *
29707545 TAATTTTCAACCTATTCCACTGCT-GCTCA-AGGAGATAAGATTCACAATTTTCAACCTATTCCA
300 CAATATTCAACCTATTCCACTACTAAC-CAGA-GAGATAAGACTCATAATCTTAAACCTATTCCA
* *
29707608 CTGCTGACCAGGGAGATAGAACTT-
363 CTACTGACCAGGGAGATA-AAATTC
** * * *
29707632 ACAATCTTCAACCTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCT
1 ACAATCTTCAACCTACTCCACTACTGACCACGGAGATAAGACTAGTGGCTTAAATCTCCTTCCCT
* * * * * * * *
29707697 ACTACCTTGGAAAGATAAGAATTGCCGTCTTCGATTTGGTCTACTACTCCTTAGAGAGATAAGAT
66 ACTACCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGAT
* * * ** * *
29707762 TTGTAATTTTAAACCTACTCCACTGCTATTCAGGGAGATAGGATTCACAATCTTAAACCTCTTAC
131 CTGTAATTTTCAACCTACTCCACTACTGCTCAGGGAGATAGAATTCACAATCTTAAACCTATTAC
* * *
29707827 AGTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGA-CAAGGGAGATAG
196 ACTGCTGACCAGAGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAA-GGAAATAG
* * * * * * * *
29707891 GATTGACCTATTTCACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTAATCCACTACTG
260 GATTCACCTATTCCACTGCTGACCAGGGAAATAGGACTTACAATATTCAACCTATTCCACTACTA
* *
29707956 ACTAGGGAGATAAG
325 ACCAGAGAGATAAG
29707970 GTTAGTGGCT
Statistics
Matches: 845, Mismatches: 193, Indels: 144
0.71 0.16 0.12
Matches are distributed among these distances:
374 1 0.00
375 18 0.02
376 63 0.07
377 16 0.02
378 4 0.00
379 2 0.00
380 1 0.00
381 1 0.00
384 6 0.01
385 40 0.05
386 547 0.65
387 37 0.04
388 5 0.01
391 1 0.00
393 3 0.00
394 4 0.00
395 14 0.02
396 64 0.08
397 17 0.02
398 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (386 bp):
ACAATCTTCAACCTACTCCACTACTGACCACGGAGATAAGACTAGTGGCTTAAATCTCCTTCCCT
ACTACCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGAT
CTGTAATTTTCAACCTACTCCACTACTGCTCAGGGAGATAGAATTCACAATCTTAAACCTATTAC
ACTGCTGACCAGAGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAAATAGG
ATTCACCTATTCCACTGCTGACCAGGGAAATAGGACTTACAATATTCAACCTATTCCACTACTAA
CCAGAGAGATAAGACTCATAATCTTAAACCTATTCCACTACTGACCAGGGAGATAAAATTC
Found at i:29707304 original size:254 final size:253
Alignment explanation
Indices: 29707044--29708150 Score: 980
Period size: 254 Copynumber: 4.3 Consensus size: 253
29707034 TCACAATCTA
* * *
29707044 CAACCTATTACACTGCTGAC-CAGAGAGATAGGATTCACAATCTTCAATCTATTCCACTATTGAC
1 CAACCTATTCCACTGCTG-CTCAGAGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGAC
* * * * * *
29707108 AAGGGAAATAGGCTTCACCTATTTCACTGCT-AGCCAGGGAAATATGACTTACAATATTCAACCT
65 AAGGGAGATAGGATTCACCTATTTCACTACTGA-CCAGGGAGATAAGACTTACAATCTTCAACCT
29707172 ATTCCACTACTGACCAGAGAGATAAGACTAGTGGTTTAAATCTTCTTCCCTACTACCTTGGGAAG
129 ATTCCACTACTGACCAGAGAGATAAGACTAGTGGTTTAAATCTTCTTCCCTACTACCTT-GGAAG
* * * *
29707237 ATAAAATTCGCCATCTTCGATCTACTCCACTACTACTTTGGGAAATAAGATCTGTGATTTT
193 ATAAGATTCGCCATCTTCGATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATTTT
* * * * **
29707298 CAACCTACTCCACCGCTGCTTAGGGAGATAGGATTCACAATCTTCAACCTACTT-CACTGTTGAC
1 CAACCTATTCCACTGCTGCTCAGAGAGATAGGATTCACAATCTTCAACCTA-TTCCACTACTGAC
* ** * ***
29707362 CAGGGAGATAGGATTCACCTATCCCACTACTAACCAGGGAGATAAGACTTACAATCTTCAAGAAA
65 AAGGGAGATAGGATTCACCTATTTCACTACTGACCAGGGAGATAAGACTTACAATCTTCAACCTA
* * * * *
29707427 TTCCACTACTGACCAGGGAGACAAGGCTAGTGGTTTAAATCTACTTCCCTACTACCTTTGAAAGA
130 TTCCACTACTGACCAGAGAGATAAGACTAGTGGTTTAAATCTTCTTCCCTACTACC-TTGGAAGA
* * * * ** *
29707492 TAAGATTCGCCATTTTCGATCTACTCTACTATTGCTTAGGGAGATAACTTTTGTAATTTT
194 TAAGATTCGCCATCTTCGATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATTTT
* * *
29707552 CAACCTATTCCACTGCTGCTCA-AGGAGATAAGATTCACAATTTTCAACCTATTCCACTGCTGAC
1 CAACCTATTCCACTGCTGCTCAGA-GAGATAGGATTCACAATCTTCAACCTATTCCACTACTGAC
* * * * ****
29707616 CAGGGAGATAGAACTTACAATCTTCAACCTGTTCCACTACTGACCAGGGAGATAAGGC-TAGTGG
65 AAGGGAGATAGGA-TT-C-A-C--CTA--T-TT-CACTACTGACCAGGGAGATAAGACTTACAAT
* * * * * * ** ** ** *
29707680 CTTAAATCTACTTCC-CTACT-ACCTTGGAAAGATAAGAATTGCCGTCTTCGAT-TTGGTCTACT
120 CTTCAACCTA-TTCCACTACTGACC--AGAGAGATAAGACTAGTGGT-TTAAATCTTCTTC-CCT
* * ** * ** * * *
29707742 ACT-CCTTAGAGAGATAAGATTTGTAATTTTAAACCTACTCCACTGCTA-TTCAGGGAGATAGGA
180 ACTACCTTGGA-AGATAAGATTCGCCATCTTCGATCTACTCCACTACTACTT-AGGGAGATAAGA
** *
29707805 T-TCACAATCTT
243 TCT-GTAATTTT
* * * * *
29707816 AAACCTCTTACAGTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGAC
1 CAACCTATTCCACTGCTG-CTCAGAGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGAC
* * * *
29707880 AAGGGAGATAGGATTGACCTATTTCACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTA
65 AAGGGAGATAGGATTCACCTATTTCACTACTGACCAGGGAGATAAGACTTACAATCTTCAACCTA
* * * ** * *
29707945 ATCCACTACTGACTAGGGAGATAAGGTTAGTGGCTTAAATCTTCTTCCCTACTACCCTGGAAGAT
130 TTCCACTACTGACCAGAGAGATAAGACTAGTGGTTTAAATCTTCTTCCCTACTACCTTGGAAGAT
* * * * *
29708010 AAGATTCGCCGTCTTCGATCTGCTCAACTACTGCTTTGGGAGATAAGATCTGTAATTTT
195 AAGATTCGCCATCTTCGATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATTTT
* * * *
29708069 CAACCTACTCCACTGCTGCTCTA-TGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGAC
1 CAACCTATTCCACTGCTGCTC-AGAGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGAC
*
29708133 CAGGGAGATAGGATTCAC
65 AAGGGAGATAGGATTCAC
29708151 AATATTCAAC
Statistics
Matches: 662, Mismatches: 156, Indels: 71
0.74 0.18 0.08
Matches are distributed among these distances:
252 1 0.00
253 121 0.18
254 321 0.48
255 24 0.04
256 4 0.01
257 1 0.00
258 3 0.00
260 3 0.00
261 1 0.00
262 4 0.01
263 21 0.03
264 148 0.22
265 10 0.02
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (253 bp):
CAACCTATTCCACTGCTGCTCAGAGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACA
AGGGAGATAGGATTCACCTATTTCACTACTGACCAGGGAGATAAGACTTACAATCTTCAACCTAT
TCCACTACTGACCAGAGAGATAAGACTAGTGGTTTAAATCTTCTTCCCTACTACCTTGGAAGATA
AGATTCGCCATCTTCGATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATTTT
Found at i:29707325 original size:298 final size:299
Alignment explanation
Indices: 29706821--29707379 Score: 849
Period size: 298 Copynumber: 1.9 Consensus size: 299
29706811 GACTCATAAT
* * * *
29706821 CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTTACAATCTTCAACCTATTCCACTATTG
1 CTTCAACCTATTCCACTGCTGACCAGGGAAATAGGACTTACAATATTCAACCTATTCCACTACTG
*
29706886 ACCAGGGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGAATCGCC
66 ACCAGAGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGAATCGCC
* * * * * * *
29706951 GTCTTCGATCTGCTCTACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACTTACTCCACTAC
131 ATCTTCGATCTACTCCACTACTACTTTGGGAAATAAGATCTGTAATTTTCAACCTACTCCACCAC
29707016 TGTTCAGGGAGATAGAATTCACAATCTACAACCTA-TTACACTGCTGACCAGAGAGATAGGATTC
196 TGTTCAGGGAGATAGAATTCACAATCTACAACCTACTT-CACTGCTGACCAGAGAGATAGGATTC
29707080 ACAATCTTCAATCTATTCCACTATTGACAAGGGAAATAGG
260 ACAATCTTCAATCTATTCCACTATTGACAAGGGAAATAGG
* *
29707120 CTTC-ACCTATTTCACTGCT-AGCCAGGGAAATATGACTTACAATATTCAACCTATTCCACTACT
1 CTTCAACCTATTCCACTGCTGA-CCAGGGAAATAGGACTTACAATATTCAACCTATTCCACTACT
* *
29707183 GACCAGAGAGATAAGACTAGTGGTTTAAATCTTCTTCCCTACTACCTTGGGAAGATAA-AATTCG
65 GACCAGAGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGAA-TCG
*
29707247 CCATCTTCGATCTACTCCACTACTACTTTGGGAAATAAGATCTGTGATTTTCAACCTACTCCACC
129 CCATCTTCGATCTACTCCACTACTACTTTGGGAAATAAGATCTGTAATTTTCAACCTACTCCACC
* * * * *
29707312 GCTGCTT-AGGGAGATAGGATTCACAATCTTCAACCTACTTCACTGTTGACCAGGGAGATAGGAT
194 ACTG-TTCAGGGAGATAGAATTCACAATCTACAACCTACTTCACTGCTGACCAGAGAGATAGGAT
29707376 TCAC
258 TCAC
29707380 CTATCCCACT
Statistics
Matches: 234, Mismatches: 22, Indels: 9
0.88 0.08 0.03
Matches are distributed among these distances:
297 3 0.01
298 223 0.95
299 8 0.03
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (299 bp):
CTTCAACCTATTCCACTGCTGACCAGGGAAATAGGACTTACAATATTCAACCTATTCCACTACTG
ACCAGAGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTACTACCTTGGGAAGATAAGAATCGCC
ATCTTCGATCTACTCCACTACTACTTTGGGAAATAAGATCTGTAATTTTCAACCTACTCCACCAC
TGTTCAGGGAGATAGAATTCACAATCTACAACCTACTTCACTGCTGACCAGAGAGATAGGATTCA
CAATCTTCAATCTATTCCACTATTGACAAGGGAAATAGG
Found at i:29707445 original size:298 final size:300
Alignment explanation
Indices: 29706796--29707445 Score: 774
Period size: 298 Copynumber: 2.2 Consensus size: 300
29706786 ATTTCACTGT
* * * * *
29706796 TAACCAGGGAGATACGACTCATAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTTA
1 TAACCAGGGAGATAAGACTTACAATCTTCAA--TATTCCACTGCTGACCAGGGAAATAGGACTTA
* * *
29706861 CAATCTTCAACCTATTCCACTATTGACCAGGGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTA
64 CAATATTCAACCTATTCCACTACTGACCAGAGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTA
* * * * *
29706926 CTACCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCTACTACTGCTTTGGGAGATAAGATC
129 CTACCTTGGGAAGATAAGAATCGCCATCTTCGATCTACTCCACTACTACTTTGGGAAATAAGATC
* *
29706991 TGTAATTTTCAACTTACTCCACTACTGTTCAGGGAGATAGAATTCACAATCTACAACCTATTACA
194 TGTAATTTTCAACCTACTCCACCACTGTTCAGGGAGATAGAATTCACAATCTACAACCTATTACA
*
29707056 CTGCTGACCAGAGAGATAGGATTCACAATCTTCAATCTATTCCACTAT
259 CTGCTGACCAGAGAGATAGGATTCAC-A-CTT-AATC---TCCACTAC
* * * * * *
29707104 TGACAAGGGAAAT-AGGCTT-C-A-C--C--TATTTCACTGCT-AGCCAGGGAAATATGACTTAC
1 TAACCAGGGAGATAAGACTTACAATCTTCAATATTCCACTGCTGA-CCAGGGAAATAGGACTTAC
* *
29707160 AATATTCAACCTATTCCACTACTGACCAGAGAGATAAGACTAGTGGTTTAAATCTTCTTCCCTAC
65 AATATTCAACCTATTCCACTACTGACCAGAGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTAC
29707225 TACCTTGGGAAGATAA-AATTCGCCATCTTCGATCTACTCCACTACTACTTTGGGAAATAAGATC
130 TACCTTGGGAAGATAAGAA-TCGCCATCTTCGATCTACTCCACTACTACTTTGGGAAATAAGATC
* * * *
29707289 TGTGATTTTCAACCTACTCCACCGCTGCTT-AGGGAGATAGGATTCACAATCTTCAACCTACTT-
194 TGTAATTTTCAACCTACTCCACCACTG-TTCAGGGAGATAGAATTCACAATCTACAACCTA-TTA
* *
29707352 CACTGTTGACCAGGGAGATAGGATTCAC-C-T-ATC-CCACTAC
257 CACTGCTGACCAGAGAGATAGGATTCACACTTAATCTCCACTAC
* *
29707392 TAACCAGGGAGATAAGACTTACAATCTTCAAGAAATTCCACTACTGACCAGGGA
1 TAACCAGGGAGATAAGACTTACAATCTTC-A-ATATTCCACTGCTGACCAGGGA
29707446 GACAAGGCTA
Statistics
Matches: 290, Mismatches: 37, Indels: 40
0.79 0.10 0.11
Matches are distributed among these distances:
288 16 0.06
289 5 0.02
290 1 0.00
291 1 0.00
292 4 0.01
294 2 0.01
295 1 0.00
297 3 0.01
298 236 0.81
299 5 0.02
302 1 0.00
304 1 0.00
305 1 0.00
307 3 0.01
308 10 0.03
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (300 bp):
TAACCAGGGAGATAAGACTTACAATCTTCAATATTCCACTGCTGACCAGGGAAATAGGACTTACA
ATATTCAACCTATTCCACTACTGACCAGAGAGATAAGACTAGTGGCTTAAATCTCCTTCCCTACT
ACCTTGGGAAGATAAGAATCGCCATCTTCGATCTACTCCACTACTACTTTGGGAAATAAGATCTG
TAATTTTCAACCTACTCCACCACTGTTCAGGGAGATAGAATTCACAATCTACAACCTATTACACT
GCTGACCAGAGAGATAGGATTCACACTTAATCTCCACTAC
Found at i:29708145 original size:297 final size:297
Alignment explanation
Indices: 29707598--29708264 Score: 966
Period size: 297 Copynumber: 2.2 Consensus size: 297
29707588 ACAATTTTCA
*
29707598 ACCTATTCCACTGCTGACCAGGGAGATAGAACTTACAATCTTCAACCTGTTCCACTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAG-ACTTACAATCTTCAACCTATTCCACTACTGACCAG
*
29707663 GGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGAAAGATAAGAATTGCCGTCTT
65 GGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCCTGGAAAGATAAGAATTGCCGTCTT
* * * * *
29707728 CGATTTGGTCTACTACTCCTTAGAGAGATAAGATTTGTAATTTTAAACCTACTCCACTGCTATTC
130 CGATCTGCTCAACTACTCCTTAGAGAGATAAGATCTGTAATTTTAAACCTACTCCACTGCTACTC
* *
29707793 AGGGAGATAGGATTCACAATCTTAAACCTCTTACAGTGCTGACCAGGGAGATAGGATTCACAATC
195 AGGGAGATAGGATTCACAATCTTAAACCTATTACAGTGCTGACCAGGGAGATAGGATTCACAATA
* *
29707858 TTCAACCTATTCCACTA-CTGA-CAAGGGAGATAGGATTG
260 TTCAACCTATTCCA-TAGCTAACCAA-GGAGATAGGATTC
* * * *
29707896 ACCTATTTCACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTAATCCACTACTGACTAG
1 ACCTATTCCACTGCTGACCAGGGAGATA-GACTTACAATCTTCAACCTATTCCACTACTGACCAG
* *
29707961 GGAGATAAGGTTAGTGGCTTAAATCTTCTTCCCTACTACCCTGG-AAGATAAG-ATTCGCCGTCT
65 GGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCCTGGAAAGATAAGAATT-GCCGTCT
* * * * *
29708024 TCGATCTGCTCAACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCT
129 TCGATCTGCTCAACTACTCCTTAGAGAGATAAGATCTGTAATTTTAAACCTACTCCACTGCTACT
* * * *
29708089 CTA-TGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAA
194 C-AGGGAGATAGGATTCACAATCTTAAACCTATTACAGTGCTGACCAGGGAGATAGGATTCACAA
*
29708153 TATTCAACCTATTCCATAGCTAACCAAGGAGATTGGATTC
258 TATTCAACCTATTCCATAGCTAACCAAGGAGATAGGATTC
* **
29708193 ACCTATTCCACTGCTGACCAGGGAGATAAGATTTACAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGAT-AGACTTACAATCTTCAACCTATTCCACTACTGACCAG
29708258 GGAGATA
65 GGAGATA
29708265 GGACTTAAGA
Statistics
Matches: 329, Mismatches: 34, Indels: 13
0.88 0.09 0.03
Matches are distributed among these distances:
296 5 0.02
297 219 0.67
298 104 0.32
299 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.29
Consensus pattern (297 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGACTTACAATCTTCAACCTATTCCACTACTGACCAGG
GAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCCTGGAAAGATAAGAATTGCCGTCTTC
GATCTGCTCAACTACTCCTTAGAGAGATAAGATCTGTAATTTTAAACCTACTCCACTGCTACTCA
GGGAGATAGGATTCACAATCTTAAACCTATTACAGTGCTGACCAGGGAGATAGGATTCACAATAT
TCAACCTATTCCATAGCTAACCAAGGAGATAGGATTC
Found at i:29708198 original size:34 final size:35
Alignment explanation
Indices: 29708154--29708219 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
29708144 GATTCACAAT
29708154 ATTCAACCTATTCCA-TAGCTAACCAAGGAGATTGG
1 ATTCAACCTATTCCACT-GCTAACCAAGGAGATTGG
* *
29708189 ATTC-ACCTATTCCACTGCTGACCAGGGAGAT
1 ATTCAACCTATTCCACTGCTAACCAAGGAGAT
29708220 AAGATTTACA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 23 0.82
35 5 0.18
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (35 bp):
ATTCAACCTATTCCACTGCTAACCAAGGAGATTGG
Found at i:29708702 original size:220 final size:220
Alignment explanation
Indices: 29707896--29709056 Score: 744
Period size: 220 Copynumber: 5.3 Consensus size: 220
29707886 GATAGGATTG
* * * * * *
29707896 ACCTATTTCACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTAATCCACTACTGACTAG
1 ACCTATTCCACTACTGACCAGGG-GATAAGACTTACAATCTTCAACCTATTCCACTACTGACAAG
* * * * *
29707961 GGAGATAAGGTTAGTGGCTTAAATCTTCTTCCCTACTACC-CTGG-AAGATAAGATTCGCCGTCT
65 GGAGATAAGGCTAATGGCTTAAATCTACTTCCCTACTACCTC-GGAAAGATAAGAATCGACGTCT
* * * * *
29708024 TCGATCTGCTCAACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTG-C
129 TCGATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGAC
*
29708088 TCTA-TGAGATAGGATTCACAATCTTCA
194 TC-AGGGAGATAGGATTCACAATCTTCA
* * * * *
29708115 ACCTATTCCATTGCTGACCAGGGAGATAGGA-TTCACAATATTCAACCTATTCCA-TAGCTAACC
1 ACCTATTCCACTACTGACCAGGG-GATAAGACTT-ACAATCTTCAACCTATTCCACTA-CTGA-C
* * * * * * **
29708178 AA-GGAG---A---T--TGGATT-CACCTA-TTCCACTGCTGACC-AGG-GAGATAAG-ATTTAC
62 AAGGGAGATAAGGCTAATGGCTTAAATCTACTTCC-CTACT-ACCTCGGAAAGATAAGAATCGAC
* * * * ** * * *
29708229 AATCTTCAACCTATTCCACTGTTGAC-CAGGGAGATAGGA-CT-TAAGATCTTCAACCTATTCCA
125 -GTCTTCGATCTACTCCACTACT-ACTTAGGGAGATAAGATCTGT-A-ATTTTCAACCTATTCCA
29708291 CTGCTGACT-AGGGAGATAGGACTT-ACAATCTTCA
186 CTGCTGACTCAGGGAGATAGGA-TTCACAATCTTCA
* * * **** * * *
29708325 ACCTATTCCACTACTGACCAGGAAGAAAAGGCTT-GTGGCTTAAATCTACTTCC-CTACT-ACCT
1 ACCTATTCCACTACTGACCAGG-GGATAAGACTTACAATCTTCAACCTA-TTCCACTACTGA-CA
* * ** *** * ** * * * * * *** *
29708387 TGGAAAGATAAGATTCGCCGTCTTCGATCTAC-TCTACTATTGCCTAGG-GAGATAACTTTTGTA
63 AGG-GAGATAAGGCT-AATGGCTTAAATCTACTTC-CCTACTACCTCGGAAAGATAAGAATCG-A
* * * * * * * * * ** * *
29708450 -ATTTTC-AACATATTCCAGTGCTGCTCAGGGAGATAGGATAC-ACAATTTTCTACCTATTTCAC
124 CGTCTTCGATC-TACTCCACTACTACTTAGGGAGATAAGAT-CTGTAATTTTCAACCTATTCCAC
** * *
29708512 TATTGAC-GAGGGAGATAGGACTCACAATCTTCA
187 TGCTGACTCAGGGAGATAGGATTCACAATCTTCA
* * *
29708545 ACCTATTCCACTACTGGCCATGGGGATAAGACTTACAATCTTTAACCTATTCCACTACTGACTAG
1 ACCTATTCCACTACTGACCA-GGGGATAAGACTTACAATCTTCAACCTATTCCACTACTGACAAG
* * * *
29708610 TGAGATAAGGCTAATGGCTTAAATCTACTTCCCTACTACCTTGGTAAGATAAGAATCGCCGTCTT
65 GGAGATAAGGCTAATGGCTTAAATCTACTTCCCTACTACCTCGGAAAGATAAGAATCGACGTCTT
* *
29708675 CGATCTGCTCTACTACTACTTAGGGAGATAAGATCTGTAATTTTCAACCT-TCTCCACTGCT-AC
130 CGATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATTTTCAACCTAT-TCCACTGCTGAC
*
29708738 TCAGGGAGATAGGATTCACATTCTTCA
194 TCAGGGAGATAGGATTCACAATCTTCA
* ** ** *
29708765 ACCTATTCCAATGTTGACCAGGGAGAT-AGAACTTACAATCTTCAACCTATTCCACTACCAACCA
1 ACCTATTCCACTACTGACCAGGG-GATAAG-ACTTACAATCTTCAACCTATTCCACTACTGACAA
* * *
29708829 GGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAAGATTCGACGTCT
64 GGGAGATAAGGCTAATGGCTTAAATCTACTTCCCTACTACCTCGGAAAGATAAGAATCGACGTCT
* * *
29708894 TCGATCTACTCCACTACTGCTTAGGGAGGTAAGATCTGTAATTTTCAACCTACTCCACTGCTG-C
129 TCGATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGAC
* * * *
29708958 TTAAGGAGAGAGGATTCACAATCTTTA
194 TCAGGGAGATAGGATTCACAATCTTCA
* * * * *
29708985 ACCTATTACACTTCTGACCAAGGAGATAGGA-TTCATAATCTTCAACCTATTCCACTACTGACAA
1 ACCTATTCCACTACTGACC-AGGGGATAAGACTT-ACAATCTTCAACCTATTCCACTACTGACAA
29709049 GGGAGATA
64 GGGAGATA
29709057 GGATTCACCT
Statistics
Matches: 724, Mismatches: 160, Indels: 115
0.72 0.16 0.12
Matches are distributed among these distances:
208 4 0.01
209 20 0.03
210 112 0.15
211 15 0.02
213 2 0.00
216 2 0.00
218 4 0.01
219 91 0.13
220 444 0.61
221 27 0.04
222 3 0.00
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.29
Consensus pattern (220 bp):
ACCTATTCCACTACTGACCAGGGGATAAGACTTACAATCTTCAACCTATTCCACTACTGACAAGG
GAGATAAGGCTAATGGCTTAAATCTACTTCCCTACTACCTCGGAAAGATAAGAATCGACGTCTTC
GATCTACTCCACTACTACTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTGCTGACTC
AGGGAGATAGGATTCACAATCTTCA
Found at i:29709135 original size:254 final size:254
Alignment explanation
Indices: 29708831--29709329 Score: 786
Period size: 254 Copynumber: 2.0 Consensus size: 254
29708821 ACCAACCAGG
*
29708831 GAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCGGAAAGATAAGATTCGAC-GTCTT
1 GAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGAAAGATAAGATTCG-CTGTCTT
* * *
29708895 CGATCTACTCCACTACTGCTTAGGGAGGTAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTT
65 CGATCTACTCCACTACTGCTTAGGGAGATAAGATATGTAATTTTCAACCTACTCCACTGCTGCTC
** * *
29708960 AAGGAGAGAGGATTCACAATCTTTAACCTATTAC-ACTTCTGACCAAGGAGATAGGATTCATAAT
130 AAGGAGAGAAAATTCACAATCTTCAACCTATT-CTACTGCTGACCAAGGAGATAGGATTCATAAT
*
29709024 CTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTCACCTATTTCACTGTTGAACAGA
194 CTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTCACCTATTCCACTGTTGAACAGA
* * *
29709085 GAGATAAGGCTAGTGGCCTAAATTTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCTGTCTTC
1 GAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGAAAGATAAGATTCGCTGTCTTC
* *
29709150 GATCTGCTCCACTACTGCTTAGGGAGATAAGATATGTAATTTTCAACCTACTTCACTGCTGCTCA
66 GATCTACTCCACTACTGCTTAGGGAGATAAGATATGTAATTTTCAACCTACTCCACTGCTGCTCA
* * * * *
29709215 GGGAGATAAAATTCACAATCTTCAGCCTATTCTAGTGCTGACCAGGGAGATAGGATTCATAATCT
131 AGGAGAGAAAATTCACAATCTTCAACCTATTCTACTGCTGACCAAGGAGATAGGATTCATAATCT
*
29709280 TCAACCTATTCCACTACTGACCAGGGAGATAGGATTCACCTATTCCACTG
196 TCAACCTATTCCACTACTGACAAGGGAGATAGGATTCACCTATTCCACTG
29709330 CTAACTTGAG
Statistics
Matches: 223, Mismatches: 20, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
253 2 0.01
254 221 0.99
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (254 bp):
GAGATAAGGCTAGTGGCCTAAATCTGCTTCCCTACTACCTCGGAAAGATAAGATTCGCTGTCTTC
GATCTACTCCACTACTGCTTAGGGAGATAAGATATGTAATTTTCAACCTACTCCACTGCTGCTCA
AGGAGAGAAAATTCACAATCTTCAACCTATTCTACTGCTGACCAAGGAGATAGGATTCATAATCT
TCAACCTATTCCACTACTGACAAGGGAGATAGGATTCACCTATTCCACTGTTGAACAGA
Found at i:29709419 original size:254 final size:254
Alignment explanation
Indices: 29708809--29709420 Score: 594
Period size: 254 Copynumber: 2.4 Consensus size: 254
29708799 ACAATCTTCA
* * * *** * * * **
29708809 ACCTATTCCACTAC-CAACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCG
1 ACCTATTCCACTGCTGAA-CAGAGAGATAAGGCTACAAGCCTAAACCTGATTCCCTACTACCGAG
* * * * * * *
29708873 GAAAGATAAGATTCGAC-GTCTTCGATCTACTCCACTACTGCTTAGGGAGGTAAGATCTGTAATT
65 GGAAGATAAGATTC-ACAATCTTCAACCTGCTCCACTACTGCTTAGGGAGATAAGATATGTAATT
* ** * *
29708937 TTCAACCTACTCCACTGCTGCTTAAGGAGAGAGGATTCACAATCTTTAACCTATTACACTTCTGA
129 TTCAACCTACTCCACTGCTGCTCAAGGAGAGAAAATTCACAATCTTCAACCTATTACACTGCTGA
29709002 CCAAGGAGATAGGATTCATAATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTC
194 CCAAGGAGATAGGATTCATAATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTC
* * *** ** * **
29709063 ACCTATTTCACTGTTGAACAGAGAGATAAGGCTAGTGGCCTAAATTTGCTTCCCTACTACCTTGG
1 ACCTATTCCACTGCTGAACAGAGAGATAAGGCTACAAGCCTAAACCTGATTCCCTACTACCGAGG
* ** * *
29709128 GAAGATAAGATTCGCTGTCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATATGTAATTTT
66 GAAGATAAGATTCACAATCTTCAACCTGCTCCACTACTGCTTAGGGAGATAAGATATGTAATTTT
* * * * *
29709193 CAACCTACTTCACTGCTGCTCAGGGAGATAAAATTCACAATCTTCAGCCTATT-CTAGTGCTGAC
131 CAACCTACTCCACTGCTGCTCAAGGAGAGAAAATTCACAATCTTCAACCTATTAC-ACTGCTGAC
* *
29709257 CAGGGAGATAGGATTCATAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGATTC
195 CAAGGAGATAGGATTCATAATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTC
* * * * *
29709317 ACCTATTCCACTGCT-AACTTGAGAGAT-AGGACTTACAATCTTCAACCT-ATTCCACTGCTGA-
1 ACCTATTCCACTGCTGAAC-AGAGAGATAAGG-C-TACAAGCCTAAACCTGATTCC-CTACT-AC
* * * *
29709378 CGAGGG-AGATAGGACTT-ACAATCTTTAACCTGTTTCACTACTG
61 CGAGGGAAGATAAGA-TTCACAATCTTCAACCTGCTCCACTACTG
29709421 ACCAGAGAGA
Statistics
Matches: 300, Mismatches: 49, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
253 8 0.03
254 272 0.91
255 19 0.06
256 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (254 bp):
ACCTATTCCACTGCTGAACAGAGAGATAAGGCTACAAGCCTAAACCTGATTCCCTACTACCGAGG
GAAGATAAGATTCACAATCTTCAACCTGCTCCACTACTGCTTAGGGAGATAAGATATGTAATTTT
CAACCTACTCCACTGCTGCTCAAGGAGAGAAAATTCACAATCTTCAACCTATTACACTGCTGACC
AAGGAGATAGGATTCATAATCTTCAACCTATTCCACTACTGACAAGGGAGATAGGATTC
Found at i:29709645 original size:34 final size:34
Alignment explanation
Indices: 29709588--29709654 Score: 89
Period size: 34 Copynumber: 2.0 Consensus size: 34
29709578 ACAATCATCA
29709588 ACCTATTCCACTACTGAAAAGGGAGATAGGATTG
1 ACCTATTCCACTACTGAAAAGGGAGATAGGATTG
* * ** *
29709622 ACCTATTTCACTGCTGACTAGGGAGATATGATT
1 ACCTATTCCACTACTGAAAAGGGAGATAGGATT
29709655 TACAATCTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.28
Consensus pattern (34 bp):
ACCTATTCCACTACTGAAAAGGGAGATAGGATTG
Found at i:29709973 original size:78 final size:81
Alignment explanation
Indices: 29709842--29710079 Score: 313
Period size: 78 Copynumber: 2.9 Consensus size: 81
29709832 ACAATCTTCA
*
29709842 ACCTATTCCATTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTGACCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGCTGACCA
*
29709906 AGGAGATAGGA-T-TC-
65 GGGAGATAGGACTATCT
* *
29709920 AGCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
29709985 GGAGATAGGACTCACAATCTTT
66 GGAGATAGGACT----ATC--T
* * *
29710007 AACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCA
1 -ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCA
29710072 GGGAGATA
65 GGGAGATA
29710080 AGGCTAGTGG
Statistics
Matches: 140, Mismatches: 9, Indels: 12
0.87 0.06 0.07
Matches are distributed among these distances:
78 68 0.49
79 3 0.02
84 2 0.01
88 67 0.48
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (81 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
GGAGATAGGACTATCT
Found at i:29710033 original size:122 final size:122
Alignment explanation
Indices: 29709818--29710678 Score: 375
Period size: 122 Copynumber: 6.8 Consensus size: 122
29709808 TTGCTGCTCT
* * *
29709818 GGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATCT
1 GGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
*
29709883 TCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCAGCTATTCCACTGCTGACCA
66 TCAACCAATTCCACTGCTGACCAAGGAGATAGGATTCAGCTATTCCACTGCTGACCA
* *
29709940 GGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCT
1 GGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
* * * * *
29710005 TTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGAC
66 TCAACCAATTCCACTGCTGACCAAGGAGATAGG-------A--TTC-AGCTATTCCACTGCTGAC
29710070 CA
121 CA
* **** * * * * * * * * **
29710072 GGGAGATAAGGC-TAGTGGCTTAAATCTCCTTCC-CTACT-ACCTCGGGAAGATAAGATTCGCTG
1 GGGAGATAAGACTTACAATCTTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGGACTCACAA
* * * * * * * *
29710134 TCTTCGATC-TTCTCCACTACTG-CTTAGGGAGATAAGATCTGTAATTGTCAACCTACTCCACTG
63 TCTTCAACCAAT-TCCACTGCTGAC-CAAGGAGAT-AG----G--A-T-TC-AGCTATTCCACTG
29710197 CTG-CTCA
116 CTGAC-CA
* * * * * *
29710204 GGGAGAGAAGA-TTCACAATCTTTAACCTATTACACTGCTGACCAAGGAGATAGGATTCATAATC
1 GGGAGATAAGACTT-ACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
* * * * * * * * *
29710268 TTCAACCTATTCCACTACT-AACAGGGGAGAGAGGATTCACCTATTTCATTGTTGACCA
65 TTCAACCAATTCCACTGCTGACCA-AGGAGATAGGATTCAGCTATTCCACTGCTGACCA
* **** * ** * * * * * * *
29710326 GGGAGATAAGGC-TAGTGGCTTAAATTTGCTTCC-CTACT-ACCTTGGGAAGATAAGATTCGCTA
1 GGGAGATAAGACTTACAATCTTCAACCT-ATTCCACTGCTGACC-AGGG-AGATAGGACTCACAA
* * *** * * * * *
29710388 TCTTCGATCTGCTGCACTGCTG-CTTAGGGAGATAAGATCTGTAATTTTCAACCTACTT-CATTG
63 TCTTCAACCAATTCCACTGCTGAC-CAAGGAGAT-AG----G--A--TTC-AGCTA-TTCCACTG
*
29710451 TTG-CTCA
116 CTGAC-CA
* * * * * *
29710458 GGGAGAT-AGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGATATGATTCACAAAC
1 GGGAGATAAGACTT-ACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATC
* * * * *
29710522 TTCAACCTATTCGACTGCTGACCAGGGAGATAGGATTCATCTATTCCACTGCTAACCA
65 TTCAACCAATTCCACTGCTGACCAAGGAGATAGGATTCAGCTATTCCACTGCTGACCA
* * **
29710580 GGGAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGGGAGATAGGACTCACAATCT
1 GGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
* * *
29710645 TCAACCTATTCCACTGTTGACCAGGGAGATAGGA
66 TCAACCAATTCCACTGCTGACCAAGGAGATAGGA
29710679 CTTACAATCT
Statistics
Matches: 548, Mismatches: 135, Indels: 112
0.69 0.17 0.14
Matches are distributed among these distances:
120 3 0.01
121 15 0.03
122 241 0.44
123 14 0.03
124 1 0.00
125 2 0.00
127 3 0.01
129 2 0.00
130 3 0.01
131 33 0.06
132 191 0.35
133 33 0.06
134 6 0.01
137 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (122 bp):
GGGAGATAAGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCT
TCAACCAATTCCACTGCTGACCAAGGAGATAGGATTCAGCTATTCCACTGCTGACCA
Found at i:29710035 original size:386 final size:386
Alignment explanation
Indices: 29709630--29710333 Score: 1097
Period size: 386 Copynumber: 1.8 Consensus size: 386
29709620 TGACCTATTT
* * *
29709630 CACTGCTGACTAGGGAGATATGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAA
1 CACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAA
* * * *
29709695 GGCTAGTGGCTTACATCTTCTTCTCTACTACCTTC-GGAAGATATGATTCGCCGTCTTCGATCTG
66 GGCTAGTGGCTTAAATCTCCTTCCCTACTACC-TCGGGAAGATAAGATTCGCCGTCTTCGATCTG
* * * * *
29709759 CTCAACTACTGCTTTGGGAGGTAAGATCTGTAATTTTCAACCTACTCCATTGCTGCTCTGGGAGA
130 CTCAACTACTGCTTAGGGAGATAAGATCTGTAATTGTCAACCTACTCCACTGCTGCTCAGGGAGA
* * * * *
29709824 TAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACC
195 GAAGATTCACAATCTTCAACCTATTACACTGCTGACCAAGGAGATAGGATTCACAATCTTCAACC
* * * *
29709889 TATTCCACTGCTGACCA-AGGAGATAGGATTCAGCTATTCCACTGCTGACCAGGGAGATAGGACT
260 TATTCCACTACT-AACAGAGGAGAGAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACT
29709953 TACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTC
324 TACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTC
*
29710016 CACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAA
1 CACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAA
* *
29710081 GGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGAAGATAAGATTCGCTGTCTTCGATCTTC
66 GGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGAAGATAAGATTCGCCGTCTTCGATCTGC
*
29710146 TCCACTACTGCTTAGGGAGATAAGATCTGTAATTGTCAACCTACTCCACTGCTGCTCAGGGAGAG
131 TCAACTACTGCTTAGGGAGATAAGATCTGTAATTGTCAACCTACTCCACTGCTGCTCAGGGAGAG
* *
29710211 AAGATTCACAATCTTTAACCTATTACACTGCTGACCAAGGAGATAGGATTCATAATCTTCAACCT
196 AAGATTCACAATCTTCAACCTATTACACTGCTGACCAAGGAGATAGGATTCACAATCTTCAACCT
* * * *
29710276 ATTCCACTACTAACAGGGGAGAGAGGATTCACCTATTTCATTGTTGACCAGGGAGATA
261 ATTCCACTACTAACAGAGGAGAGAGGATTCACCTATTCCACTGCTGACCAGGGAGATA
29710334 AGGCTAGTGG
Statistics
Matches: 285, Mismatches: 31, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
385 5 0.02
386 280 0.98
ACGTcount: A:0.28, C:0.24, G:0.19, T:0.28
Consensus pattern (386 bp):
CACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAA
GGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGAAGATAAGATTCGCCGTCTTCGATCTGC
TCAACTACTGCTTAGGGAGATAAGATCTGTAATTGTCAACCTACTCCACTGCTGCTCAGGGAGAG
AAGATTCACAATCTTCAACCTATTACACTGCTGACCAAGGAGATAGGATTCACAATCTTCAACCT
ATTCCACTACTAACAGAGGAGAGAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTA
CAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTC
Found at i:29710125 original size:298 final size:295
Alignment explanation
Indices: 29709203--29710129 Score: 802
Period size: 298 Copynumber: 3.1 Consensus size: 295
29709193 CAACCTACTT
* * * *
29709203 CACTGCTGCTCAGGGAGATAAAATTCACAATCTTCAGCCTATTCTAGTGCTGACCAGGGAGATAG
1 CACTGCTGCTCAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAG
* * *
29709268 GATTCATAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGATTCACCTATTCCACTGCTA
66 GATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACCTATTCCACTGCTG
* * *
29709333 ACTTGAGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACGAGGGAGATAGGACTTACA
131 ACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGAC-TACA
** * * * ** * * *
29709398 ATCTTTAACCTGTTTCACTACTGACCAGAGAGATAAGG-C-TAGTGGCTTAAATCTGCTTCC-CT
195 ATCTTTAACCAATTCCACT-CTTACCAGGGAGAT-AGGACTTACAGTCTTCAATCT-ATTCCACT
* * * ** *
29709460 ACT-ACCCTGGAAAGATAAGAATCGCCGTCTTCGATTTTCAACCTACTC
257 ACTGA-CCTGG-GAGATAAGACT-G-TGTCTT--A-AATC-TCCT--TC
* * * * *
29709508 CACTGCTGCTCAGGGAGATAGGATTCAAAATCTTCAACCTCTTACACTGCTGACCGGGGAGATAG
1 CACTGCTGCTCAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAG
* * * *
29709573 GATTCACAATCATCAACCTATTCCACTACTGA-AAAGGGAGATAGGATTGACCTATTTCACTGCT
66 GATTCACAATCTTCAACCTATTCCACTACTGACCAA-GGAGATAGGATTCACCTATTCCACTGCT
* * * *
29709637 GACTAGGGAGATATGATTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGG-CTAG
130 GACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT-AGGACTAC
*** * ** * * * * * * **
29709701 TGGC-TT-A-CATCTTCTTCTCTACTACCTTCGGAAGATATGA-TTCGCCGTCTTCGATCTGCTC
194 AATCTTTAACCA-ATTCCACTCT--TACC--AGGGAGATAGGACTT-ACAGTCTTCAATCTATTC
* * * * * * * *
29709762 AACTACTG-CTTTGGGAGGTAAGATCTGTAATTTTCAACCTAC-TC
253 CACTACTGAC-CTGGGAGATAAGA-CTGT-GTCTTAAATCTCCTTC
* * * *
29709806 CATTGCTGCTCTGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAG
1 CACTGCTGCTCAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAG
* *
29709871 GATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCAGCTATTCCACTGCTG
66 GATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACCTATTCCACTGCTG
* *
29709936 ACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACA
131 ACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACT-ACA
* *
29710001 ATCTTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTAC
195 ATCTTTAACCAATTCCACT-CTTACCAGGGAGATAGGACTTACAGTCTTCAATCTATTCCACTAC
* * *
29710066 TGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTC
259 TGACCTGGGAGATAAGACT-GTGTCTTAAATCTCCTTC
* *
29710104 C-CTACTACCTC-GGGAAGATAAGATTC
1 CACTGCT-GCTCAGGG-AGATAAGATTC
29710130 GCTGTCTTCG
Statistics
Matches: 484, Mismatches: 110, Indels: 63
0.74 0.17 0.10
Matches are distributed among these distances:
297 18 0.04
298 220 0.45
299 7 0.01
300 6 0.01
301 10 0.02
302 10 0.02
303 5 0.01
304 6 0.01
305 182 0.38
306 20 0.04
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (295 bp):
CACTGCTGCTCAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAG
GATTCACAATCTTCAACCTATTCCACTACTGACCAAGGAGATAGGATTCACCTATTCCACTGCTG
ACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTACAA
TCTTTAACCAATTCCACTCTTACCAGGGAGATAGGACTTACAGTCTTCAATCTATTCCACTACTG
ACCTGGGAGATAAGACTGTGTCTTAAATCTCCTTC
Found at i:29710360 original size:254 final size:254
Alignment explanation
Indices: 29709926--29710587 Score: 785
Period size: 254 Copynumber: 2.6 Consensus size: 254
29709916 ATTCAGCTAT
* * * * *
29709926 TCCACTGCTGAC-CAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGTTGACCAGGGAG
1 TCCACTGCTG-CTCAGGGAGA-AAGAATTCACAATCTTCAACCTATTCTACTGCTGACCAAGGAG
* * * * * * * *
29709989 ATAGGACTCACAATCTTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAAC
64 ATAGGATTCACAAACTTCAACCTATTCCACTACTGAACAGGGAGAGAGG-------A--TTC-AC
*
29710054 CTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGA
119 CTATTCCACTGCTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGA
* *
29710119 AGATAAGATTCGCTGTCTTCGATCTTCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTGTCA
184 AGATAAGATTCGCTATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTGTCA
29710184 ACCTAC
249 ACCTAC
*
29710190 TCCACTGCTGCTCAGGGAGAGAAG-ATTCACAATCTTTAACCTATTAC-ACTGCTGACCAAGGAG
1 TCCACTGCTGCTCAGGGAGA-AAGAATTCACAATCTTCAACCTATT-CTACTGCTGACCAAGGAG
* * * *
29710253 ATAGGATTCATAATCTTCAACCTATTCCACTACT-AACAGGGGAGAGAGGATTCACCTATTTCAT
64 ATAGGATTCACAAACTTCAACCTATTCCACTACTGAACA-GGGAGAGAGGATTCACCTATTCCAC
* * * *
29710317 TGTTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAAGAT
128 TGCTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGAAGATAAGAT
* * *
29710382 TCGCTATCTTCGATCTGCTGCACTGCTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTAC
193 TCGCTATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTGTCAACCTAC
* * * * * *
29710444 TTCATTGTTGCTCAGGGAGATAGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGAT
1 TCCACTGCTGCTCAGGGAGAAAGAATTCACAATCTTCAACCTATTCTACTGCTGACCAAGGAGAT
* * * * * *
29710509 ATGATTCACAAACTTCAACCTATTCGACTGCTGACCAGGGAGATAGGATTCATCTATTCCACTGC
66 AGGATTCACAAACTTCAACCTATTCCACTACTGAACAGGGAGAGAGGATTCACCTATTCCACTGC
*
29710574 TAACCAGGGAGATA
131 TGACCAGGGAGATA
29710588 GGACTTACAA
Statistics
Matches: 347, Mismatches: 44, Indels: 24
0.84 0.11 0.06
Matches are distributed among these distances:
253 3 0.01
254 242 0.70
255 6 0.02
257 1 0.00
263 6 0.02
264 88 0.25
265 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (254 bp):
TCCACTGCTGCTCAGGGAGAAAGAATTCACAATCTTCAACCTATTCTACTGCTGACCAAGGAGAT
AGGATTCACAAACTTCAACCTATTCCACTACTGAACAGGGAGAGAGGATTCACCTATTCCACTGC
TGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGAAGATAAGATTCG
CTATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTGTCAACCTAC
Found at i:29710554 original size:640 final size:635
Alignment explanation
Indices: 29709339--29710973 Score: 2091
Period size: 640 Copynumber: 2.5 Consensus size: 635
29709329 GCTAACTTGA
* * * *
29709339 GAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACGAGGGAGATAGGACTTACAATCTTT
1 GAGATAGGACTCACAATCTTCAACCTATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTC
* *
29709404 AACCTGTTTCACTACTGACCAGAGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACC-CT
66 AACCTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTC-
* * *
29709468 GGAAAGATAAGAATCGCCGTCTTCGATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATT
130 GGGAAGATAAGAATCGCCGTCTTCGA-TTTC-TCC-ACT--ACTGCT--T-AGGGAGATAAGATT
** * * *
29709533 CAAAATCTTCAACCT-CTTACACTGCTGAC-CGGGGAGATAGGATTCACAATCATCAACCTATTC
187 -GTAAT-TTCAACCTAC-TCCACTGCTG-CTCAGGGAGATAGGATTCACAATCATCAACCTATTA
* * * * *
29709596 CACTACTGA-AAAGGGAGATAGG------A-TT-GACCTATTTCACTGCTGACTAGGGAGATATG
248 CACTGCTGACCAA-GGAGATAGGATTCAAATTTCAACCTATTTCACTACTAAC-AGGG-G--A-G
* * *
29709652 ATTTACA-ATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACATCTTCT
307 A--TA-AGA--TTC-ACCTATTTCACTGCTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTTCT
* * * * *
29709716 TCTCTACTACCTTCGGAAGATATGATTCGCCGTCTTCGATCTGCTCAACTACTGCTTTGGGAGGT
366 TCCCTACTACCTTCGGAAGATAAGATTCGCCATCTTCGATCTGCTCAACTACTGCTTAGGGAGAT
* *
29709781 AAGATCTGTAATTTTCAACCTACTCCATTGCTGCTCTGGGAGATAAGATTTACAATCTTCAACCT
431 AAGATCTGTAATTTTCAACCTACTCCATTGCTGCTCAGGGAGATAAGATTCACAATCTTCAACCT
* *
29709846 ATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAG
496 ATTCCACTGCTGACCAGGGAGATAGGATTCACAAACTTCAACCTATTCCACTGCTGACCAAGGAG
* *
29709911 ATAGGATTCAGCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACT
561 ATAGGATTCAGCTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTAAACCTATTCCACT
*
29709976 GTTGACCAGG
626 ATTGACCAGG
* *
29709986 GAGATAGGACTCACAATCTTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTC
1 GAGATAGGACTCACAATCTTCAACCTATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTC
* *
29710051 AACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCG
66 AACCTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCG
* *
29710116 GGAAGATAAGATTCGCTGTCTTCGATCTTCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTG
131 GGAAGATAAGAATCGCCGTCTTCGAT-TTCTCCACTACTGCTTAGGGAGATAAGAT-TGTAATT-
* * * *
29710181 TCAACCTACTCCACTGCTGCTCAGGGAGAGAAGATTCACAATCTTTAACCTATTACACTGCTGAC
193 TCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATCATCAACCTATTACACTGCTGAC
* * *
29710246 CAAGGAGATAGGATTCATAATCTTCAACCTATTCCACTACTAACAGGGGAGAGAGGATTCACCTA
258 CAAGGAGATAGGATTCA-AAT-TTCAACCTATTTCACTACTAACAGGGGAGATAAGATTCACCTA
* * *
29710311 TTTCATTGTTGACCAGGGAGATAAGGCTAGTGGCTTAAAT-TTGCTTCCCTACTACCTTGGGAAG
321 TTTCACTGCTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTT-CTTCCCTACTACCTTCGGAAG
* *
29710375 ATAAGATTCGCTATCTTCGATCTGCTGC-ACTGCTGCTTAGGGAGATAAGATCTGTAATTTTCAA
385 ATAAGATTCGCCATCTTCGATCTGCT-CAACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAA
* * * *
29710439 CCTACTTCATTGTTGCTCAGGGAGAT-AGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAG
449 CCTACTCCATTGCTGCTCAGGGAGATAAG-ATTCACAATCTTCAACCTATTCCACTGCTGACCAG
* * * *
29710503 GGAGATATGATTCACAAACTTCAACCTATTCGACTGCTGACCAGGGAGATAGGATTCATCTATTC
513 GGAGATAGGATTCACAAACTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCAGCTATTC
29710568 CACTGCTAACCAGGGAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGG
578 CACTGCTAACCAGGGAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGG
29710626 GAGATAGGACTCACAATCTTCAACCTATTCCACTG-TTGACCAGGGAGATAGGACTTACAATCTT
1 GAGATAGGACTCACAATCTTCAACCTATTCCACTGCTT-ACCAGGGAGATAGGACTTACAATCTT
* * * *
29710690 CAACCTGTTCCACTTCTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTCCCCTACTACCTT
65 CAACCTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTC
* * * * *
29710755 GGGAAGATAAGAATCGCCGTCTTTGATTTGGTCTACTACTTCTTAGAGAGATAAGATTTGTAATT
130 GGGAAGATAAGAATCGCCGTCTTCGATTT-CTCCACTACTGCTTAGGGAGATAAGA-TTGTAA-T
* * *
29710820 TTCAACCTACTCCACTGCTGCTCAGGGACATAGGATTCACAATCCTCAACCTCTTACACTGCTGA
192 TTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATCATCAACCTATTACACTGCTGA
* ** *
29710885 CCAGGGAGATAGGATTCACAATATTCAACCTATTTCACTACTGAA-AAAGGAGATAAGATTGACC
257 CCAAGGAGATAGGATTCA-AAT-TTCAACCTATTTCACTACT-AACAGGGGAGATAAGATTCACC
*
29710949 TATTTCACTGCTGACTAGGGAGATA
319 TATTTCACTGCTGACCAGGGAGATA
29710974 TGACTTACAA
Statistics
Matches: 869, Mismatches: 93, Indels: 59
0.85 0.09 0.06
Matches are distributed among these distances:
639 10 0.01
640 661 0.76
641 14 0.02
643 8 0.01
645 5 0.01
646 4 0.00
647 144 0.17
648 2 0.00
649 6 0.01
650 15 0.02
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (635 bp):
GAGATAGGACTCACAATCTTCAACCTATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTC
AACCTGTTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTCG
GGAAGATAAGAATCGCCGTCTTCGATTTCTCCACTACTGCTTAGGGAGATAAGATTGTAATTTCA
ACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACAATCATCAACCTATTACACTGCTGACCAA
GGAGATAGGATTCAAATTTCAACCTATTTCACTACTAACAGGGGAGATAAGATTCACCTATTTCA
CTGCTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTTCTTCCCTACTACCTTCGGAAGATAAGA
TTCGCCATCTTCGATCTGCTCAACTACTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTC
CATTGCTGCTCAGGGAGATAAGATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAG
GATTCACAAACTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCAGCTATTCCACTGCTA
ACCAGGGAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGG
Found at i:29710554 original size:684 final size:675
Alignment explanation
Indices: 29709794--29713298 Score: 3149
Period size: 684 Copynumber: 5.1 Consensus size: 675
29709784 ATCTGTAATT
* * * * * *
29709794 TTCAACCTACTCCATTGCTG-CTCTGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTG
1 TTCAACCTATTCCACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTG
*
29709858 ACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGG-A-TTC-
65 ACCAGGGAGATAGGATT--C-A--TTC-ACCTATTCCACTGCTGACCAGGGAGATAGGAACTTCA
* * *
29709920 AGCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAG
124 ACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAG
* * * * * ****
29709985 GGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTTACCAGGGAGAT-AGGACTTACAATCT
189 GGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGG-C-TAGTGGCT
* * * ** * * *
29710049 TCAACCTATTCCACTACTGACC-AGGG-AGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTAC
252 TAAATCTATTCC-CTACT-ACCTTGGGAAGATAAGAATAGCGTCTTAGATCT-CTTCCCTACTAC
* * * * * *
29710112 CTCGGGAAGATAAGATTCGCT-GTCTTCGATCTTCTCCACTACTGCTTAGGGAGATAAGA-TCTG
314 CTCGGGAAGATAAGATTTG-TAATTTTC-AACTTCTCCACTACTGCTTAGGGAGATAGGATTC-A
* * * * *
29710175 TAATTGTCAACCTACTCCACTGCTG-CTCAGGGAGAGAAGATTCACAATCTTTAACCTATTACAC
376 CAATTGTCAACCTACTACACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAACCTATTACAC
* * * * *
29710239 TGCTGACCAAGGAGATAGGATTCATAATCTTCAACCTATTCCACTACTAAC-AGGG-GAGA-GAG
440 TACTGACCAAGGAGATAGGA---A-AA--TTC-ACCTATTCCACTGCTGACTAGGGAGAGACTAC
* * * **
29710301 GA-TTC-ACCTATTTCATTGTTGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACT
498 AACTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATTT-CTTCCCTACT
** * * *
29710364 ACCTTGGGAAGATAAGATTCGCTATCTTCGATCTGCTGCACTGCTGCTTAGGGAGATAAGATCTG
562 ACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTG
* * *
29710429 TAATTTTCAACCTACTTCATTGTTGCTCAGGGAGATAGAATTCACAATC
627 TAATTTTCAACCTACTCCATTGCTGCTCAGGGAGATAGGATTCACAATC
* * * * *
29710478 TTCAGCCTATTCTACTGCTGACCAGGGAGATATGATTCACAAACTTCAACCTATTCGACTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
* *
29710543 CCAGGGAGATAGGATTCA-T---CTATTCCACTGCTAACCAGGGAGATAGGACTTACAATCTTAA
66 CCAGGGAGATAGGATTCATTCACCTATTCCACTGCTGACCAGGGAGATAGG------AA-CTTCA
*
29710604 ACCTATTCCACTATTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAG
124 ACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAG
* *
29710669 GGAGATAGGACTTACAATCTTCAACCTGTTCCACTTCTGACCAGGGAGATAAGGCTAGTGGCTTA
189 GGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTA
* * * * * *** *
29710734 AATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTTTGAT-T-TGGTCTACTACTTC
254 AATCT-ATTCCCTACTACCTTGGGAAGATAAGAATAG-CGTCTTAGATCTCTTCCCTACTACCTC
** * * * *
29710797 TTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGACATAGGATTCACAA
317 -GGGA-AGATAAGATTTGTAATTTTCAA-CTTCTCCACTACTGCTTAGGGAGATAGGATTCACAA
** * *
29710862 TCCTCAACCT-CTTACACTGCTGACCAGGGAGATAGGATTCACAATATTCAACCTATTTCACTAC
379 TTGTCAACCTAC-TACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTACACTAC
** * * *
29710926 TGAAAAAGGAGAT---AAGATTGACCTATTTCACTGCTGACTAGGGAGATATGACTTACAATCTT
443 TGACCAAGGAGATAGGAAAATTCACCTATTCCACTGCTGACTAGGGAG--A-GAC-TACAA-CTT
*
29710988 CAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACATCTTCTTCCCTACTACCTT
503 CAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAAT-TTCTTCCCTACTACCTT
* * * * * **
29711053 CGGAAGATATGATTCACCGTCTTCAATCTACTTAACTACTGCTTTGGGAGATAAGATCTGTAATT
567 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATT
* * *
29711118 TTCAACCTACTCCATTGCTGCTCTGGGAGATAAGATTTACAATC
632 TTCAACCTACTCCATTGCTGCTCAGGGAGATAGGATTCACAATC
* *
29711162 TTCAACCTATTCCATTGCTGACCAAGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
*
29711227 CCAAGGAGATAGG----ATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTAAAATCTTCA
66 CCAGGGAGATAGGATTCATTCACCTATTCCACTGCTGACCAGGGAGATAGG------AA-CTTCA
* *
29711288 ACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTT-ACCA
124 ACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTG-TTGACCA
* *
29711352 GGGAGATAGGACTTACAATCTTCAACCTGTTGCACTACTGACCAGGGAGATAAGGCTAGTGGCTT
188 GGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTT
* * * * ***
29711417 AAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCACCGTATTTGAT-T-TGGTCTACTACAG
253 AAATCT-ATTCCCTACTACCTTGGGAAGATAAGAAT-AGCGTCTTAGATCTCTTCCCTACTAC--
** *
29711480 CT-TAGAGAGATAAGATTTGTAATTTTCAACTTACACCACTACTGCTTAGGGAGATAGGATTCAC
314 CTCGGGA-AGATAAGATTTGTAATTTTCAACTT-CTCCACTACTGCTTAGGGAGATAGGATTCAC
*
29711544 AATCTG-CAACCT-CTTACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCAC
377 AAT-TGTCAACCTAC-TACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTACAC
*
29711607 TACTGA-CAAGGGAGATAGG---ATGCACCTAGTT-CACTGCTGACTAGGGAGATATGACTTACA
440 TACTGACCAA-GGAGATAGGAAAATTCACCTA-TTCCACTGCTGACTAGGGAG--A-GAC-TACA
*
29711667 ATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAGTCTTCTTCCCTACT
499 A-CTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAAT-TTCTTCCCTACT
29711732 ACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTG
562 ACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTG
* *
29711797 TAATTTTCAACCTACTGCACTGCTGCTCAGGGAGATAGGATTCACAATC
627 TAATTTTCAACCTACTCCATTGCTGCTCAGGGAGATAGGATTCACAATC
* * *
29711846 TTCAACCTATTCCATTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
* *
29711911 CCAGGGAGAGAGG----ATTCACCTATTCCACTGCTGACTAGGGAGATAGGACCTACAATCTTCA
66 CCAGGGAGATAGGATTCATTCACCTATTCCACTGCTGACCAGGGAGATAGG------AA-CTTCA
* * *
29711972 ACCTATTCCACTGTTGACCAGGGAGATACGACTCACAATCTTCAACCTATTCCACTGCTAACCAG
124 ACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAG
* *
29712037 AGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTA
189 GGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTA
* * * * * * *
29712102 AATCTACTTCCTTACTACCTTGGGAAGATAAGAATTGCCGTCTTCGATCTGC-TCTACGACTGCT
254 AATCTA-TTCCCTACTACCTTGGGAAGATAAGAATAG-CGTCTTAGATCT-CTTC-CCTACTACC
* * * *
29712166 TTGGG-AGATAAGATCTGTAATTTTCAACTTACTCCACTACTGCTCACGGAGATAGGATTCACAA
315 TCGGGAAGATAAGATTTGTAATTTTCAACTT-CTCCACTACTGCTTAGGGAGATAGGATTCACAA
* * *
29712230 TCT-ACAACCTATTACACTGCTGACCAGAGAGATAGGATTCACAATCTTCAACCTATTACACTAC
379 T-TGTCAACCTACTACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTACACTAC
* * **
29712294 TGACAAAGGAGAT---AAGATTCACCTATTTTACTGCTGACTAGGGAGATATGACTTACAATCTT
443 TGACCAAGGAGATAGGAAAATTCACCTATTCCACTGCTGACTAGGGAG--A-GAC-TACAA-CTT
* * *
29712356 CAACCTATTCAACTACTGACCAGAGAGGTAAGGCTAGTGGCTTAAATTTTCTTCCCTACTACCTT
503 CAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAA-TTTCTTCCCTACTACCTT
* * * * *
29712421 GGGAAGATAAGATTCGCCATCTTTGATCTGCTCCACTACTGCTTTGGGAAATAAGATTTATAATT
567 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATT
*
29712486 TTCAACCTACTCCATTGCTGCTCAGGGAGATAGGATTCAGAATC
632 TTCAACCTACTCCATTGCTGCTCAGGGAGATAGGATTCACAATC
** *
29712530 TTCAACCTATTCCACTGCTGACCAAAGAGATAGG-------A--TTC-ACCTATCCCACTGCTGA
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
* * * *
29712585 CCAGGGAGATAGGACTTACAATCTTTAACCTATTCCTCTACTGACCAGGGAGATAAGGCTAGTGG
66 CCAGGGAGATAGGA-TT-C-A---TTCACCTATTCCACTGCTGACCAGGGAGAT-AGG--A---A
* * * ** * * * * ** * * ** * *
29712650 CTTAAATCTACTTTC-CTACT-ACCTTGGGAAGATAAGAATCGCCGTCTTCGATCTGCTCTACTA
119 CTTCAACCTA-TTCCACTGTTGACC-AGGG-AGATAGGACTCACAATCTTCAACCTATTCCACTG
* * * *
29712713 TTG-CTTAGGGAGATAAGATCTGT--AATTTTCAACCTATTCCACTACTGACTAGGGAGAT-AGG
181 TTGAC-CAGGGAGATAGGA-CT-TACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGG
**** * * * * ** * * * *
29712774 ACTTACAATCTTCAACCTATTCCACTACTAACC--AGGAAGACAAGGCTTGTGGCTTAAATCTAC
243 -C-TAGTGGCTTAAATCTATTCC-CTACT-ACCTTGGGAAGATAAGAATAGCGTCTTAGATCT-C
* * * * * * * * *
29712837 TTCCCTACTACCTAGGAAAGATAAGATTTGCT-GTCTTCGATCTACTCTACTATTGCTTAGGGCG
303 TTCCCTACTACCTCGGGAAGATAAGATTTG-TAATTTTC-AACTTCTCCACTACTGCTTAGGGAG
*** *** * * * *
29712901 ATAACTTTTGTAATTTTCAACCTA-TCCAGTGCT-ACTCAGGGAGATAGGATTCACAATTTTCAA
366 ATAGGATTCACAATTGTCAACCTACTACACTGCTGAC-CAGGGAGATAGGATTCACAATCTTCAA
* * * * * *
29712964 CCTATTTCACTATTGACGAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGGCCATG
430 CCTATTACACTACTGACCAAGGAGATAGGA---A-AA--TTC-ACCTATTCCACTGCTGACTA-G
* * * *
29713029 GAGATAAGACTTATAATCTTCAACCTATTCCACTACTGACTAGTGAGATAAGGCTAGTGGCTTAA
487 G-GA-GAGAC-TACAA-CTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAA
* * * * * * *
29713094 ATCTACTTCTCTACTACCTTGGGAAGATAAGAATCGCCGTTTTCGATCTGCTCTACTACTTCTTA
548 AT-TTCTTCCCTACTACCTTGGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTT
* * * * * *
29713159 GGGAGAAAAGATCGGTAATTTTCAACCTTCTCCACTGTTGCTAAGGGAGATAGGATTCACAATC
612 GGGAGATAAGATCTGTAATTTTCAACCTACTCCATTGCTGCTCAGGGAGATAGGATTCACAATC
* * *
29713223 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTTCACTACCG
1 TTCAACCTATTCCACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTG
29713287 ACCAGGGAGATA
65 ACCAGGGAGATA
29713299 AGTCTAGTGG
Statistics
Matches: 2384, Mismatches: 318, Indels: 219
0.82 0.11 0.07
Matches are distributed among these distances:
674 68 0.03
675 9 0.00
676 1 0.00
677 2 0.00
678 3 0.00
679 2 0.00
680 1 0.00
681 8 0.00
682 19 0.01
683 123 0.05
684 1841 0.77
685 47 0.02
686 7 0.00
687 5 0.00
689 1 0.00
690 1 0.00
692 4 0.00
693 209 0.09
694 3 0.00
695 2 0.00
700 1 0.00
702 3 0.00
703 24 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (675 bp):
TTCAACCTATTCCACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGA
CCAGGGAGATAGGATTCATTCACCTATTCCACTGCTGACCAGGGAGATAGGAACTTCAACCTATT
CCACTGTTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATA
GGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTAT
TCCCTACTACCTTGGGAAGATAAGAATAGCGTCTTAGATCTCTTCCCTACTACCTCGGGAAGATA
AGATTTGTAATTTTCAACTTCTCCACTACTGCTTAGGGAGATAGGATTCACAATTGTCAACCTAC
TACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTACACTACTGACCAAGGAGAT
AGGAAAATTCACCTATTCCACTGCTGACTAGGGAGAGACTACAACTTCAACCTATTCCACTACTG
ACCAGGGAGATAAGGCTAGTGGCTTAAATTTCTTCCCTACTACCTTGGGAAGATAAGATTCGCCG
TCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTACTCCATTGCT
GCTCAGGGAGATAGGATTCACAATC
Found at i:29710673 original size:254 final size:254
Alignment explanation
Indices: 29709926--29710675 Score: 604
Period size: 254 Copynumber: 2.9 Consensus size: 254
29709916 ATTCAGCTAT
* * * * *
29709926 TCCACTGCTGAC-CAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGTTGACCAGGGAG
1 TCCACTGCTG-CTCAGGGAGAGAAGA-TTCACAATCTTCAACCTATTACACTGCTGACCAAGGAG
* * * * * * *
29709989 ATAGGACTCACAATCTTTAACCAATTCCACTGCTTACCA-GGGAGATAGGACTTACAATCTTCAA
64 ATAGGATTCACAAACTTCAACCTATTCCACTAC-TAACAGGGGAGAGAGG-------A--TTC-A
* * *** * ** *
29710053 CCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGG
118 CCTATTCCACTGCTAACCAGGGAGATAAGGCTACAAGCTTAAACCTGATTCCCTACTACCTAGGG
* * ** * * * * *
29710118 AAGATAAGATTCGCTGTCTTCGATCTTCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTGTC
183 AAGATAAGACTCACAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGATCTGTAATTGTC
29710183 AACCTAC
248 AACCTAC
*
29710190 TCCACTGCTGCTCAGGGAGAGAAGATTCACAATCTTTAACCTATTACACTGCTGACCAAGGAGAT
1 TCCACTGCTGCTCAGGGAGAGAAGATTCACAATCTTCAACCTATTACACTGCTGACCAAGGAGAT
* * * * *
29710255 AGGATTCATAATCTTCAACCTATTCCACTACTAACAGGGGAGAGAGGATTCACCTATTTCATTGT
66 AGGATTCACAAACTTCAACCTATTCCACTACTAACAGGGGAGAGAGGATTCACCTATTCCACTGC
* *** ** * * * *
29710320 TGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAAGATTCG
131 TAACCAGGGAGATAAGGCTACAAGCTTAAACCTGATTCCCTACTACCTAGGGAAGATAAGACTCA
* * * * * * *
29710385 CTATCTTCGATCTGCTGCACTGCTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTAC
196 CAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGATCTGTAATTGTCAACCTAC
* * * * * *
29710444 TTCATTGTTGCTCAGGGAGA-TAGAATTCACAATCTTCAGCCTATT-CTACTGCTGACCAGGGAG
1 TCCACTGCTGCTCAGGGAGAGAAG-ATTCACAATCTTCAACCTATTAC-ACTGCTGACCAAGGAG
* * * * * *
29710507 ATATGATTCACAAACTTCAACCTATTCGACTGCTGACCA-GGGAGATAGGATTCATCTATTCCAC
64 ATAGGATTCACAAACTTCAACCTATTCCACTACT-AACAGGGGAGAGAGGATTCACCTATTCCAC
* *
29710571 TGCTAACCAGGGAGAT-AGGACTTACAATCTTAAACCT-ATTCCACTATTGACC-AGGG-AGATA
128 TGCTAACCAGGGAGATAAGG-C-TACAAGCTTAAACCTGATTCC-CTACT-ACCTAGGGAAGATA
* * *
29710632 GGACTCACAATCTTCAACCTATTCCACTGTTGAC-CAGGGAGATA
189 AGACTCACAATCTTCAACCTACTCCACTGCTG-CTCAGGGAGATA
29710676 GGACTTACAA
Statistics
Matches: 411, Mismatches: 64, Indels: 32
0.81 0.13 0.06
Matches are distributed among these distances:
253 6 0.01
254 282 0.69
255 23 0.06
256 3 0.01
257 1 0.00
263 7 0.02
264 89 0.22
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (254 bp):
TCCACTGCTGCTCAGGGAGAGAAGATTCACAATCTTCAACCTATTACACTGCTGACCAAGGAGAT
AGGATTCACAAACTTCAACCTATTCCACTACTAACAGGGGAGAGAGGATTCACCTATTCCACTGC
TAACCAGGGAGATAAGGCTACAAGCTTAAACCTGATTCCCTACTACCTAGGGAAGATAAGACTCA
CAATCTTCAACCTACTCCACTGCTGCTCAGGGAGATAAGATCTGTAATTGTCAACCTAC
Found at i:29710939 original size:386 final size:386
Alignment explanation
Indices: 29710320--29711017 Score: 1035
Period size: 386 Copynumber: 1.8 Consensus size: 386
29710310 ATTTCATTGT
* *
29710320 TGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAAGATTCG
1 TGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCG
* * * * *
29710385 CTATCTTCGATCTGCTGCACTGCTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTTCATT
66 CCATCTTCGATCTGCTGCACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACT
* * * * *
29710450 GTTGCTCAGGGAGATAGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGATATGATT
131 GCTGCTCAGGGACATAGAATTCACAATCCTCAACCTATTCTACTGCTGACCAGGGAGATAGGATT
* ** * * *
29710515 CACAAACTTCAACCTATTCGACTGCTGACCAGGGAGATAGGATTCATCTATTCCACTGCTAACCA
196 CACAAACTTCAACCTATTCGACTACTGAAAAAGGAGATAAGATTCACCTATTCCACTGCTAACCA
*
29710580 GGGAGATAGGACTTACAATCTTAAACCTATTCCACTATTGACCAGGGAGATAGGACTCACAATCT
261 GGGAGATAGGACTTACAATCTTAAACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATCT
29710645 TCAACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTTC
326 TCAACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTTC
29710706 TGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCG
1 TGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCG
* * * * * *
29710771 CCGTCTTTGATTTGGT-CTACTACTTCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCAC
66 CCATCTTCGATCTGCTGC-ACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCAC
* *
29710835 TGCTGCTCAGGGACATAGGATTCACAATCCTCAACCTCTTAC-ACTGCTGACCAGGGAGATAGGA
130 TGCTGCTCAGGGACATAGAATTCACAATCCTCAACCTATT-CTACTGCTGACCAGGGAGATAGGA
* * *
29710899 TTCACAATA-TTCAACCTATTTC-ACTACTGAAAAAGGAGATAAGATTGACCTATTTCACTGCTG
194 TTCACAA-ACTTCAACCTA-TTCGACTACTGAAAAAGGAGATAAGATTCACCTATTCCACTGCTA
* * *
29710962 ACTAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATA
257 ACCAGGGAGATAGGACTTACAATCTTAAACCTATTCCACTACTGACCAGGGAGATA
29711018 AGGCTAGTGG
Statistics
Matches: 275, Mismatches: 33, Indels: 8
0.87 0.10 0.03
Matches are distributed among these distances:
385 1 0.00
386 269 0.98
387 5 0.02
ACGTcount: A:0.29, C:0.23, G:0.19, T:0.29
Consensus pattern (386 bp):
TGACCAGGGAGATAAGGCTAGTGGCTTAAATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCG
CCATCTTCGATCTGCTGCACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACT
GCTGCTCAGGGACATAGAATTCACAATCCTCAACCTATTCTACTGCTGACCAGGGAGATAGGATT
CACAAACTTCAACCTATTCGACTACTGAAAAAGGAGATAAGATTCACCTATTCCACTGCTAACCA
GGGAGATAGGACTTACAATCTTAAACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATCT
TCAACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTTC
Found at i:29710981 original size:298 final size:298
Alignment explanation
Indices: 29710648--29711315 Score: 937
Period size: 298 Copynumber: 2.2 Consensus size: 298
29710638 ACAATCTTCA
* *
29710648 ACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTTCTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTTCTGACCAG
* *
29710713 GGAGATAAGGCTAGTGGCTTAAAT-TTGCTCCCCTACTACCTTGGGAAGATAAGAATCGCCGTCT
66 GGAGATAAGGCTAGTGGCTTAAATCTT-CTCCCCTACTACCTTCGGAAGATAAGAATCACCGTCT
** * ** * *
29710777 TTGATTTGGTCT-ACTACTTCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGC
130 TCAATCTACT-TAACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGC
* * *
29710841 TCAGGGACATAGGATTCACAATCCTCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAA
194 TCAGGGACATAAGATTCACAATCCTCAACCTATTACACTGCTGACCAAGGAGATAGGATTCACAA
* *
29710906 TATTCAACCTATTTCACTACTGAAAAAGGAGATAAGATTG
259 TATTCAACCTATTCCACTACTGAAAAAGGAGATAAGATTC
* * * *
29710946 ACCTATTTCACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTTCTGACCAG
* * * *
29711011 GGAGATAAGGCTAGTGGCTTACATCTTCTTCCCTACTACCTTCGGAAGATATGATTCACCGTCTT
66 GGAGATAAGGCTAGTGGCTTAAATCTTCTCCCCTACTACCTTCGGAAGATAAGAATCACCGTCTT
* * *
29711076 CAATCTACTTAACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTACTCCATTGCTGCTC
131 CAATCTACTTAACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTC
* * * * * * *
29711141 TGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAAGGAGATAGGATTCACAATC
196 AGGGACATAAGATTCACAATCCTCAACCTATTACACTGCTGACCAAGGAGATAGGATTCACAATA
* ** *
29711206 TTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTC
261 TTCAACCTATTCCACTACTGAAAAAGGAGATAAGATTC
*
29711244 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGT-TGACCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACT-TCTGACCA
29711308 GGGAGATA
65 GGGAGATA
29711316 GGACTCACAA
Statistics
Matches: 324, Mismatches: 43, Indels: 6
0.87 0.12 0.02
Matches are distributed among these distances:
297 1 0.00
298 321 0.99
299 2 0.01
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (298 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTTCTGACCAG
GGAGATAAGGCTAGTGGCTTAAATCTTCTCCCCTACTACCTTCGGAAGATAAGAATCACCGTCTT
CAATCTACTTAACTACTGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTC
AGGGACATAAGATTCACAATCCTCAACCTATTACACTGCTGACCAAGGAGATAGGATTCACAATA
TTCAACCTATTCCACTACTGAAAAAGGAGATAAGATTC
Found at i:29711212 original size:386 final size:382
Alignment explanation
Indices: 29710868--29711691 Score: 1013
Period size: 386 Copynumber: 2.2 Consensus size: 382
29710858 ACAATCCTCA
* * *
29710868 ACCTCTTACACTGCTGACCAGGGAGATAGGA-TTCACAATATTCAACCTATTTCACTACTGA-A-
1 ACCTATTACACTGCTGACCAGGGAGATAGGACTT-AAAATATTCAACCTATTCCACTACTGACAG
* * * * * * * *
29710930 A-A-AGGA-GATAA-GATTGACCTATTTCACTGCTGACTAGGGAGATATGACTTACAATCTTCAA
65 AGATAGGACCACAATCATTAACCAATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAA
* *
29710991 CCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTACATCTTCTTCCCTACTACCTTCGG
130 CCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTCGG
* * * * * *
29711056 AAGATATGATTCACCGTCTTCAATCTACT-TAACTACTGCTTTGGGAGATAAGATCTGTAATTTT
195 AAGATAAGAATCACCGTATTCAATCTACTCT-ACTACAGCTTAGAGAGATAAGATCTGTAATTTT
* * * * * * *
29711120 CAACCTACTCCATTGCTGCTCT-GGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGAC
259 CAACCTACACCACTACTGCT-TAGGGAGATAAGATTCACAATCTGCAACCTATTACACTGCTGAC
*
29711184 CAAGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTC
323 CAAGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGACATAGGATTC
* * **
29711244 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTACACTGCTGACCAGGGAGATAGGACTTAAAATATTCAACCTATTCCACTACTGA-CA-
* *
29711309 GGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTT
64 -GAGATAGGAC-CACAATCATTAACCAATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTT
* *
29711374 CAACCTGTTGCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTT
127 CAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTT
* ** * ** *
29711439 GGGAAGATAAGAATCACCGTATTTGATTTGGTCTACTACAGCTTAGAGAGATAAGATTTGTAATT
192 CGGAAGATAAGAATCACCGTATTCAATCTACTCTACTACAGCTTAGAGAGATAAGATCTGTAATT
* * *
29711504 TTCAACTTACACCACTACTGCTTAGGGAGATAGGATTCACAATCTGCAACCTCTTACACTGCTGA
257 TTCAACCTACACCACTACTGCTTAGGGAGATAAGATTCACAATCTGCAACCTATTACACTGCTGA
* * * *
29711569 CCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGA-CAAGGGAGATAGGATGC
322 CCAAGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAA-GGACATAGGATTC
* * * *
29711630 ACCTAGTT-CACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGAC
1 ACCTA-TTACACTGCTGACCAGGGAGATAGGACTTAAAATATTCAACCTATTCCACTACTGAC
29711692 CAGGGAGATA
Statistics
Matches: 381, Mismatches: 52, Indels: 21
0.84 0.11 0.05
Matches are distributed among these distances:
376 51 0.13
377 2 0.01
378 1 0.00
381 1 0.00
382 1 0.00
383 4 0.01
385 8 0.02
386 310 0.81
387 3 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (382 bp):
ACCTATTACACTGCTGACCAGGGAGATAGGACTTAAAATATTCAACCTATTCCACTACTGACAGA
GATAGGACCACAATCATTAACCAATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAAC
CTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTCGGA
AGATAAGAATCACCGTATTCAATCTACTCTACTACAGCTTAGAGAGATAAGATCTGTAATTTTCA
ACCTACACCACTACTGCTTAGGGAGATAAGATTCACAATCTGCAACCTATTACACTGCTGACCAA
GGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGACCAAGGACATAGGATTC
Found at i:29711253 original size:34 final size:34
Alignment explanation
Indices: 29711210--29711274 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
29711200 ACAATCTTCA
29711210 ACCTATTCCACTGCTGACCAAGGAGATAGGATTC
1 ACCTATTCCACTGCTGACCAAGGAGATAGGATTC
*
29711244 ACCTATTCCACTGCTGACCAGGGAGATAGGA
1 ACCTATTCCACTGCTGACCAAGGAGATAGGA
29711275 CTTAAAATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.22
Consensus pattern (34 bp):
ACCTATTCCACTGCTGACCAAGGAGATAGGATTC
Found at i:29711295 original size:78 final size:81
Alignment explanation
Indices: 29711166--29711403 Score: 286
Period size: 78 Copynumber: 2.9 Consensus size: 81
29711156 ACAATCTTCA
* *
29711166 ACCTATTCCATTGCTGACCAAGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTGCTGACCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGCTGACCA
*
29711230 AGGAGATAGGA-T-TC-
65 GGGAGATAGGACTATCT
* *
29711244 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
29711309 GGAGATAGGACTCACAATCTTT
66 GGAGATAGGACT----ATC--T
* * * * *
29711331 AACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTGTTGCACTACTGACCA
1 -ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCA
29711396 GGGAGATA
65 GGGAGATA
29711404 AGGCTAGTGG
Statistics
Matches: 137, Mismatches: 12, Indels: 12
0.85 0.07 0.07
Matches are distributed among these distances:
78 67 0.49
79 3 0.02
84 2 0.01
88 65 0.47
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (81 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGCTGACCAG
GGAGATAGGACTATCT
Found at i:29711340 original size:122 final size:122
Alignment explanation
Indices: 29711142--29711362 Score: 343
Period size: 122 Copynumber: 1.8 Consensus size: 122
29711132 TTGCTGCTCT
* * * *
29711142 GGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAAGGAGATAGGATTCACAATCT
1 GGGAGATAAGACTTAAAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGACTCACAATCT
*
29711207 TCAACCTATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCA
66 TCAACCAATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCA
* * *
29711264 GGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCT
1 GGGAGATAAGACTTAAAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGACTCACAATCT
* * *
29711329 TTAACCAATTCCACTGCTTACCAGGGAGATAGGA
66 TCAACCAATTCCACTGCTGACCAAGGAGATAGGA
29711363 CTTACAATCT
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
122 88 1.00
ACGTcount: A:0.32, C:0.24, G:0.19, T:0.25
Consensus pattern (122 bp):
GGGAGATAAGACTTAAAATCTTCAACCTATTCCACTGCTGACCAAGGAGATAGGACTCACAATCT
TCAACCAATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCA
Found at i:29711402 original size:298 final size:297
Alignment explanation
Indices: 29710648--29711405 Score: 731
Period size: 298 Copynumber: 2.5 Consensus size: 297
29710638 ACAATCTTCA
* * * *
29710648 ACCTATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTTCTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTACTGACCAG
*** * **** * * * * * **
29710713 GGAGATAAGGCTAGTGGCTTAAATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTT
66 GGAGATAAGGCTACAAGCTTACATCCAATTCCCTACTACC-TAGGAAGATAGGATTCACAATCTT
** ** ** * * * *
29710778 TGATTTGGTCT-ACTACTTCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCT
130 CAACCTACT-TAACTACTGCTCAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCT
* * *
29710842 CAGGGACATAGGATTCACAATCCTCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAAT
194 CAGGGACATAAGATTCACAATCCTCAACCTATTACACTGCTGACCAAGGAGATAGGATTCACAAT
* *
29710907 ATTCAACCTATTTCACTACTGAAAAAGGAGATAAGATTG
259 ATTCAACCTATTCCACTACTGAAAAAGGAGATAAGATTC
* * * *
29710946 ACCTATTTCACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTACTGACCAG
*** *** * * **
29711011 GGAGATAAGGCTAGTGGCTTACATCTTCTTCCCTACTACCTTCGGAAGATATGATTCACCGTCTT
66 GGAGATAAGGCTACAAGCTTACATCCAATTCCCTACTACC-TAGGAAGATAGGATTCACAATCTT
* ** *
29711076 CAATCTACTTAACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTACTCCATTGCTGCTC
130 CAACCTACTTAACTACTGCTCAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTC
* * * * * * *
29711141 TGGGAGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAAGGAGATAGGATTCACAATC
195 AGGGACATAAGATTCACAATCCTCAACCTATTACACTGCTGACCAAGGAGATAGGATTCACAATA
* ** *
29711206 TTCAACCTATTCCACTGCTGACCAAGGAGATAGGATTC
260 TTCAACCTATTCCACTACTGAAAAAGGAGATAAGATTC
**
29711244 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTACTGACCAG
* * *
29711309 GGAGAT-AGGACTCACAATCTTTA-A-CCAATTCCACTGCTTACC-AGGGAGATAGGACTT-ACA
66 GGAGATAAGG-CT-ACAAGC-TTACATCCAATTCC-CTAC-TACCTAGGAAGATAGGA-TTCACA
* *
29711369 ATCTTCAACCT-GTTGCACTACTGAC-CAGGGAGATAAG
125 ATCTTCAACCTACTT-AACTACTG-CTCAGGGAGATAAG
29711406 GCTAGTGGCT
Statistics
Matches: 387, Mismatches: 64, Indels: 18
0.83 0.14 0.04
Matches are distributed among these distances:
297 6 0.02
298 365 0.94
299 9 0.02
300 7 0.02
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (297 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTACTGACCAG
GGAGATAAGGCTACAAGCTTACATCCAATTCCCTACTACCTAGGAAGATAGGATTCACAATCTTC
AACCTACTTAACTACTGCTCAGGGAGATAAGATCTGTAATTTTCAACCTACTCCACTGCTGCTCA
GGGACATAAGATTCACAATCCTCAACCTATTACACTGCTGACCAAGGAGATAGGATTCACAATAT
TCAACCTATTCCACTACTGAAAAAGGAGATAAGATTC
Found at i:29711405 original size:640 final size:631
Alignment explanation
Indices: 29709109--29711359 Score: 2026
Period size: 640 Copynumber: 3.5 Consensus size: 631
29709099 GGCCTAAATT
* * ** * * * *
29709109 TGCTTCCCTACTACCTTGGGAAGATAAGAT-TCGCTGTCTTCGATCTGCTCCACTACTGCTTAGG
1 TGCTTCACTACT-CCTTAGGAAGATAAGATCT-GCAATCTTCAACCTACTCCACTACTGCTCAGG
** * * *
29709173 GAGATAAGATATGTAATTTTCAACCTACTTCACTGCTG-CTCAGGGAGATAAAATTCACAATCTT
64 GAGATAAGAT-TACAATCTTCAACCTACTCCACTGCTGAC-CAGGGAGATAAGATTCACAATCTT
* * * * *
29709237 CAGCCTATTCTAGTGCTGACCAGGGAGATAGGATTCATAATCTTCAACCTATTCCACTACTGACC
127 CAACCTATTCCACTGCTGACCAAGGAGATAGGATTC---A--TTC-ACCTATTCCACTGCTGACC
* ** * *
29709302 AGGGAGATAGGA-TTC-ACCTATTCCACTGCTAACTTGAGAGATAGGACTTACAATCTTCAACCT
186 AGGGAGATAGGACTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCT
* * * * * *
29709365 ATTCCACTGCTGACGAGGGAGATAGGACTTACAATCTTTAACCTGTTTCACTACTGACCAGAGAG
251 ATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAG
* *
29709430 ATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCCTGGAAAGATAAGAATCGCCGTCTTCGAT
316 ATAAGGCTAGTGGCTTAAATCTG-TTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTTCGA-
* * * *** * *
29709495 TTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCAAAATCTTCAACCT-CTTACACTGCT
379 TTT--ATCTACT--ACT--T-CTTAGGGAGATAAGATTTGTAATTTTCAACCTAC-TCCACTGCT
* * * ** *
29709559 GAC-CGGGGAGATAGGATTCACAATCATCAACCTATTCCACTACTGAAAAGGGAGATAGGATTGA
436 G-CTCAGGGAGATAGGATTCACAATCATCAACCTATTACACTGCTGACCAGGGAGATAGGATTCA
* ** * ** * * * ** * *
29709623 C-CTATTTC-A-CT-GCTGACTAGGGAGATATGATTTACA-ATCTTCAACCTATTCCACTACTGA
500 CAATA-TTCAACCTATTTCACTACTGAAAAAGGAGATA-AGA--TT-AACCTATTTCACTGCTGA
* * * * * * * *
29709683 CCAGGGAGATAAGGCTAGTGGCTTACATCTTCTTCTCTACTACCTTCGGAAGATATGATTCGCCG
560 CCAGGGAGATAAGGCTAGTGGCTT-CAACTTCTTCCCTACTACC-TAGGGAGATAAGACTAGCTG
*
29709748 TCTTCGATC
623 GCTTCGATC
* * * * * * * * *
29709757 TGC-TCAACTACTGCTTTGGGAGGTAAGATCTGTAATTTTCAACCTACTCCATTGCTGCTCTGGG
1 TGCTTC-ACTACTCCTTAGGAAGATAAGATCTGCAATCTTCAACCTACTCCACTACTGCTCAGGG
* * *
29709821 AGATAAGATTTACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGATTCACAATCTTCA
65 AGATAAGA-TTACAATCTTCAACCTACTCCACTGCTGACCAGGGAGATAAGATTCACAATCTTCA
*
29709886 ACCTATTCCACTGCTGACCAAGGAGATAGG----ATTCAGCTATTCCACTGCTGACCAGGGAGAT
129 ACCTATTCCACTGCTGACCAAGGAGATAGGATTCATTCACCTATTCCACTGCTGACCAGGGAGAT
* * *
29709947 AGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCA
194 AGG-------A-CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCT
29710012 ATTCCACTGCTT-ACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGA
251 ATTCCACTG-TTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGA
* * * *
29710076 GATAAGGCTAGTGGCTTAAATCTCCTTCCCTACTACCTCGGGAAGATAAGATTCGCTGTCTTCGA
315 GATAAGGCTAGTGGCTTAAATCT-GTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTTCGA
* * * * *
29710141 TCTTCTCCACTACTGCTTAGGGAGATAAGATCTGTAATTGTCAACCTACTCCACTGCTGCTCAGG
379 T-TTATCTACTACTTCTTAGGGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGG
* * * * * * *
29710206 GAGAGAAGATTCACAATCTTTAACCTATTACACTGCTGACCAAGGAGATAGGATTCATAATCTTC
443 GAGATAGGATTCACAATCATCAACCTATTACACTGCTGACCAGGGAGATAGGATTCACAATATTC
* ** * * * * *
29710271 AACCTATTCCACTACT-AACAGGGGAGAGAGGATTCACCTATTTCATTGTTGACCAGGGAGATAA
508 AACCTATTTCACTACTGAA-AAAGGAGATAAGATTAACCTATTTCACTGCTGACCAGGGAGATAA
* * * * * **
29710335 GGCTAGTGGCTTAAATTTGCTTCCCTACTACCTTGGGAAGATAAGATTCGCTATCTTCGATC
572 GGCTAGTGGCTTCAACTT-CTTCCCTACTACCTAGGG-AGATAAGACTAGCTGGCTTCGATC
* * * * * * * * **
29710397 TGCTGCACTGCTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTTCATTGTTGCTCAGGGA
1 TGCTTCACTACTCCTTAGGAAGATAAGATCTGCAATCTTCAACCTACTCCACTACTGCTCAGGGA
* * * * *
29710462 GAT-AGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGATATGATTCACAAACTTCA
66 GATAAG-ATT-ACAATCTTCAACCTACTCCACTGCTGACCAGGGAGATAAGATTCACAATCTTCA
* * *
29710526 ACCTATTCGACTGCTGACCAGGGAGATAGGATTCA-T---CTATTCCACTGCTAACCAGGGAGAT
129 ACCTATTCCACTGCTGACCAAGGAGATAGGATTCATTCACCTATTCCACTGCTGACCAGGGAGAT
**
29710587 AGGACTTACAATCTTAAACCTATTCCACTATTGACCAGGGAGATAGGACTCACAATCTTCAACCT
194 AGGAC-T----TC---AACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCT
* *
29710652 ATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTGTTCCACTTCTGACCAGGGAG
251 ATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAG
* * *
29710717 ATAAGGCTAGTGGCTTAAATTTGCTCCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTTTGAT
316 ATAAGGCTAGTGGCTTAAATCTG-TTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTTCGAT
* *
29710782 TTGGTCTACTACTTCTTAGAGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGG
380 TT-ATCTACTACTTCTTAGGGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGG
* * *
29710847 ACATAGGATTCACAATCCTCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATATTCA
444 AGATAGGATTCACAATCATCAACCTATTACACTGCTGACCAGGGAGATAGGATTCACAATATTCA
* * * *
29710912 ACCTATTTCACTACTGAAAAAGGAGATAAGATTGACCTATTTCACTGCTGACTAGGGAGATATGA
509 ACCTATTTCACTACTGAAAAAGGAGATAAGATTAACCTATTTCACTGCTGACCAGGGAGATAAGG
**** * * *
29710977 CTTACAATCTTCAACCTATTCCACTACTGACC-AGGGAGATAAGGCTAG-TGGCTTAC-ATC
574 C-TAGTGGCTTCAACTTCTTCC-CTACT-ACCTAGGGAGATAAGACTAGCTGGCTT-CGATC
* * * * * * ** **
29711036 TTCTTCCCTACTACCTTCGGAAGATATGAT-T-CACCGTCTTCAATCTACTTAACTACTGCTTTG
1 TGCTTCACTACT-CCTTAGGAAGATAAGATCTGCA--ATCTTCAACCTACTCCACTACTGCTCAG
** * * * *
29711099 GGAGATAAGATCTGTAATTTTCAACCTACTCCATTGCTG-CTCTGGGAGATAAGATTTACAATCT
63 GGAGATAAGAT-TACAATCTTCAACCTACTCCACTGCTGAC-CAGGGAGATAAGATTCACAATCT
*
29711163 TCAACCTATTCCATTGCTGACCAAGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGAC
126 TCAACCTATTCCACTGCTGACCAAGGAGATAGGATT--C-A--TTC-ACCTATTCCACTGCTGAC
* * *
29711228 CAAGGAGATAGGA-TTC-ACCTATTCCACTGCTGACCAGGGAGATAGGACTTAAAATCTTCAACC
185 CAGGGAGATAGGACTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACC
* * * * *
29711291 TATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTCCACTGCTTACCAGGGA
250 TATTCCACTGTTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGA
29711356 GATA
315 GATA
29711360 GGACTTACAA
Statistics
Matches: 1321, Mismatches: 216, Indels: 140
0.79 0.13 0.08
Matches are distributed among these distances:
632 1 0.00
633 2 0.00
637 30 0.02
638 4 0.00
639 32 0.02
640 879 0.67
641 27 0.02
642 7 0.01
643 14 0.01
644 4 0.00
645 4 0.00
646 5 0.00
647 272 0.21
648 13 0.01
650 27 0.02
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (631 bp):
TGCTTCACTACTCCTTAGGAAGATAAGATCTGCAATCTTCAACCTACTCCACTACTGCTCAGGGA
GATAAGATTACAATCTTCAACCTACTCCACTGCTGACCAGGGAGATAAGATTCACAATCTTCAAC
CTATTCCACTGCTGACCAAGGAGATAGGATTCATTCACCTATTCCACTGCTGACCAGGGAGATAG
GACTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGT
TGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAG
TGGCTTAAATCTGTTCCCTACTACCTTGGGAAGATAAGAATCGCCGTCTTCGATTTATCTACTAC
TTCTTAGGGAGATAAGATTTGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCA
CAATCATCAACCTATTACACTGCTGACCAGGGAGATAGGATTCACAATATTCAACCTATTTCACT
ACTGAAAAAGGAGATAAGATTAACCTATTTCACTGCTGACCAGGGAGATAAGGCTAGTGGCTTCA
ACTTCTTCCCTACTACCTAGGGAGATAAGACTAGCTGGCTTCGATC
Found at i:29711449 original size:298 final size:291
Alignment explanation
Indices: 29711186--29711999 Score: 887
Period size: 298 Copynumber: 2.7 Consensus size: 291
29711176 TTGCTGACCA
* ** * * *
29711186 AGGAGATAGGATTCACAATCTTCAACCTATTCCACTGCTGAC-CAAGGAGATAGGATTCACCTAT
1 AGGAGATAAGATTCGTAATTTTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCACCTAT
*
29711250 TCCACTGCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAGGGAGAT
65 TCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGAT
* *
29711315 AGGACTCACAATCTTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCT
130 AGGA-TCAC--TC--T-ACCAATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCT
* *
29711380 GTTGCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAG
189 ATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAG
* * * * * * *
29711445 ATAAGAATCACCGTATTTGATTTGGTCTACTACAGCTT
254 ATAAGATTCACCGTCTTCGATCTGCTCCACTACTGCTT
* * * * *
29711483 AGAGAGATAAGATTTGTAATTTTCAACTTACACCACTACTGCTTAGGGAGATAGGATTCACAATC
1 AG-GAGATAAGATTCGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCAC---C
* **
29711548 TGCAACCTCTTACACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTACTG
62 T---A----TTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGTTG
* * *
29711612 ACAAGGGAGATAGGATGCAC-CT---AGTT-CACTGCTGACTAGGGAGATATGACTTACAATCTT
119 ACCAGGGAGATAGGAT-CACTCTACCAATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTT
* *
29711672 CAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAGTCTTCTTCCCTACTACCTT
183 CAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTT
*
29711737 GGGAAGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTT
248 GGGAAGATAAGATTCACCGTCTTCGATCTGCTCCACTACTGC-TT
* *
29711782 GGGAGATAAGA-TCTGTAATTTTCAACCTACTGCACTGCTGCTCAGGGAGATAGGATTCACAATC
1 AGGAGATAAGATTC-GTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGG-------A--
* *
29711846 TTCAACCTATTCCATTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGA
56 TTC-ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGA
* * *
29711911 CCAGGGAGAGAGGAT---TC-ACCTATTCCACTGCTGACTAGGGAGATAGGACCTACAATCTTCA
120 CCAGGGAGATAGGATCACTCTACCAATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCA
**
29711972 ACCTATTCCACTGTTGACCAGGGAGATA
185 ACCTATTCCACTACTGACCAGGGAGATA
29712000 CGACTCACAA
Statistics
Matches: 433, Mismatches: 52, Indels: 63
0.79 0.09 0.11
Matches are distributed among these distances:
295 1 0.00
297 6 0.01
298 337 0.78
299 7 0.02
301 2 0.00
302 1 0.00
303 1 0.00
304 1 0.00
305 4 0.01
307 6 0.01
308 67 0.15
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (291 bp):
AGGAGATAAGATTCGTAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACCTATT
CCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATA
GGATCACTCTACCAATTCCACTGCTGACTAGGGAGATAGGACTTACAATCTTCAACCTATTCCAC
TACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAT
TCACCGTCTTCGATCTGCTCCACTACTGCTT
Found at i:29711694 original size:386 final size:386
Alignment explanation
Indices: 29710954--29711701 Score: 1090
Period size: 386 Copynumber: 1.9 Consensus size: 386
29710944 TGACCTATTT
* *
29710954 CACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAA
1 CACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAA
* * * * *
29711019 GGCTAGTGGCTTACATCTTCTTCCCTACTACCTTCGGAAGATATGATTCACCGTCTTCAATCTAC
66 GGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTCGGAAGATAAGAATCACCGTATTCAATCTAC
* * * * * *
29711084 TTAACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTACTCCATTGCTGCTCTGGGAGAT
131 TTAACTACAGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACACCACTACTGCTCTGGGAGAT
* * * *
29711149 AAGATTTACAATCTTCAACCTATTCCATTGCTGACCAAGGAGATAGGATTCACAATCTTCAACCT
196 AAGATTCACAATCTGCAACCTATTACACTGCTGACCAAGGAGATAGGATTCACAATCTTCAACCT
* *
29711214 ATTCCACTGCTGACCAAGGAGATAGGATTCACCTATTCCACTGCTGACCAGGGAGATAGGACTTA
261 ATTCCACTACTGACCAAGGAGATAGGATGCACCTATTCCACTGCTGACCAGGGAGATAGGACTTA
**
29711279 AAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTC
326 AAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTC
* * *
29711340 CACTGCTTACCAGGGAGATAGGACTTACAATCTTCAACCTGTTGCACTACTGACCAGGGAGATAA
1 CACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAA
* ** * **
29711405 GGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTGGGAAGATAAGAATCACCGTATTTGATTTGG
66 GGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTCGGAAGATAAGAATCACCGTATTCAATCTAC
* *
29711470 TCT-ACTACAGCTTAGAGAGATAAGATTTGTAATTTTCAACTTACACCACTACTGCT-TAGGGAG
131 T-TAACTACAGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACACCACTACTGCTCT-GGGAG
* * *
29711533 ATAGGATTCACAATCTGCAACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAAC
194 ATAAGATTCACAATCTGCAACCTATTACACTGCTGACCAAGGAGATAGGATTCACAATCTTCAAC
* *
29711598 CTATTCCACTACTGA-CAAGGGAGATAGGATGCACCTAGTT-CACTGCTGACTAGGGAGATATGA
259 CTATTCCACTACTGACCAA-GGAGATAGGATGCACCTA-TTCCACTGCTGACCAGGGAGATAGGA
*
29711661 CTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATA
322 CTTAAAATCTTCAACCTATTCCACTACTGACCAGGGAGATA
29711702 AGGCTAGTGG
Statistics
Matches: 320, Mismatches: 38, Indels: 8
0.87 0.10 0.02
Matches are distributed among these distances:
385 4 0.01
386 313 0.98
387 3 0.01
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (386 bp):
CACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAA
GGCTAGTGGCTTAAATCTGCTTCCCTACTACCTTCGGAAGATAAGAATCACCGTATTCAATCTAC
TTAACTACAGCTTAGAGAGATAAGATCTGTAATTTTCAACCTACACCACTACTGCTCTGGGAGAT
AAGATTCACAATCTGCAACCTATTACACTGCTGACCAAGGAGATAGGATTCACAATCTTCAACCT
ATTCCACTACTGACCAAGGAGATAGGATGCACCTATTCCACTGCTGACCAGGGAGATAGGACTTA
AAATCTTCAACCTATTCCACTACTGACCAGGGAGATAGGACTCACAATCTTTAACCAATTC
Found at i:29711937 original size:34 final size:34
Alignment explanation
Indices: 29711894--29711958 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
29711884 ACAATCTTCA
*
29711894 ACCTATTCCACTGTTGACCAGGGAGAGAGGATTC
1 ACCTATTCCACTGCTGACCAGGGAGAGAGGATTC
* *
29711928 ACCTATTCCACTGCTGACTAGGGAGATAGGA
1 ACCTATTCCACTGCTGACCAGGGAGAGAGGA
29711959 CCTACAATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (34 bp):
ACCTATTCCACTGCTGACCAGGGAGAGAGGATTC
Found at i:29711979 original size:78 final size:82
Alignment explanation
Indices: 29711839--29712085 Score: 297
Period size: 78 Copynumber: 3.0 Consensus size: 82
29711829 AGATAGGATT
*
29711839 CACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAGGA-CTCACAATCTTCAACCTATTCC
1 CACAA-CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACCT-ACAATCTTCAACCTATTCC
29711903 ACTGTTGACCAGGGAGA-G
64 ACTGTTGACCAGGGAGACG
** *
29711921 -AGGA-TTC-ACCTATTCCACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCCAC
1 CACAACTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACCTACAATCTTCAACCTATTCCAC
29711983 TGTTGACCAGGGAGATACG
66 TGTTGACCAGGGAG--ACG
* * * *
29712002 ACTCACAATCTTCAACCTATTCCACTGCTAACCAGAGAGATATGACTTACAATCTTCAACCTATT
1 ---CACAA-CTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACCTACAATCTTCAACCTATT
**
29712067 CCACTACTGACCAGGGAGA
62 CCACTGTTGACCAGGGAGA
29712086 TAAGGCTAGT
Statistics
Matches: 141, Mismatches: 13, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
78 64 0.45
79 5 0.04
80 1 0.01
81 3 0.02
85 2 0.01
86 1 0.01
87 3 0.02
88 62 0.44
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (82 bp):
CACAACTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACCTACAATCTTCAACCTATTCCAC
TGTTGACCAGGGAGACG
Found at i:29712036 original size:122 final size:122
Alignment explanation
Indices: 29711814--29712041 Score: 361
Period size: 122 Copynumber: 1.9 Consensus size: 122
29711804 CAACCTACTG
* * *
29711814 CACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACCAGGGAGATAG
1 CACTGCTGCTCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAC
* * *
29711879 GACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAGAGAGGATTCACCTATTC
66 GACTCACAATCTTCAACCTATTCCACTGCTAACCAGAGAGAGAGGATTCACCTATTC
*
29711936 CACTGCTGACT-AGGGAGATAGGAC-CTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGAT
1 CACTGCTG-CTCAGGGAGATAGGACTC-ACAATCTTCAACCTATTCCACTGCTGACCAGGGAGAT
29711999 ACGACTCACAATCTTCAACCTATTCCACTGCTAACCAGAGAGA
64 ACGACTCACAATCTTCAACCTATTCCACTGCTAACCAGAGAGA
29712042 TATGACTTAC
Statistics
Matches: 97, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
121 1 0.01
122 94 0.97
123 2 0.02
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.24
Consensus pattern (122 bp):
CACTGCTGCTCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAC
GACTCACAATCTTCAACCTATTCCACTGCTAACCAGAGAGAGAGGATTCACCTATTC
Found at i:29712086 original size:298 final size:297
Alignment explanation
Indices: 29711244--29712089 Score: 770
Period size: 298 Copynumber: 2.8 Consensus size: 297
29711234 GATAGGATTC
* * * ** *
29711244 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTAAAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTACACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTGACAAG
* * * * *
29711309 GGAGATAGGACT-CACAATCTTTAACCAATTCCACTGCTTACCAGGGAGATAGGACTTACAATCT
66 GGAGAGAGGA-TGCAC---C--T----AGTT-CACTGCTGACTAGGGAGATAGGACCTACAATCT
* * * *** ** *
29711373 TCAACCTGTTGCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTGCTTCCCTACTACCT
120 TCAACCTATTCCACTACTGACCAGGGAGATAAGACTACAAGCTTAAGCCT-ATTCCCTACTACCT
* * * ** * ** ** ** * * * * *
29711438 TGGGAAGATAAGAATCACCGTATTTGATTTGGTCTACTACAGCTTAGAGAGATAAGATTTGTAAT
184 AGAGAAGATAAGATTCACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAAT
* *
29711503 TTTCAACTTACACCACTACTGCTTAGGGAGATAGGATTCACAATCTGCA
249 TTTCAACCTACACCACTACTGCTCAGGGAGATAGGATTCACAATCTGCA
* *
29711552 ACCTCTTACACTGCTGACCAGGGAGATAGGATTCACAATCTTCAACCTATTCCACTACTGACAAG
1 ACCTATTACACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTGACAAG
* * *
29711617 GGAGATAGGATGCACCTAGTTCACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTC
66 GGAGAGAGGATGCACCTAGTTCACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTC
* *** * * * *
29711682 CACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAGTCTTCTTCCCTACTACCTTGGGAAGATAA
131 CACTACTGACCAGGGAGATAAGACTACAAGCTTAAG-CCTATTCCCTACTACCTAGAGAAGATAA
* ** * * * **
29711747 GATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCTAC
195 GATTCACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAATTTTCAACCTAC
** * *
29711812 TGCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCA
260 ACCACTACTGCTCAGGGAGATAGGATTCACAATCTGCA
* * ** *
29711850 ACCTATTCCATTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAG
1 ACCTATTACACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTGACAAG
*
29711915 GGAGAGAGGATTCACCTA-TTCCACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATT
66 GGAGAGAGGATGCACCTAGTT-CACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATT
** * * *
29711979 CCACTGTTGACCAGGGAGATACGACTCACAATCTTCAA-CCTATTCCACTGCTAACC-AGAG-AG
130 CCACTACTGACCAGGGAGATAAGACT-ACAAGCTT-AAGCCTATTCC-CTACT-ACCTAGAGAAG
* *
29712041 ATATGACTT-ACAATCTTCAACCTATTCCACTACTGAC-CAGGGAGATAAG
191 ATAAGA-TTCACAATCTTCAACCTACTCCACTACTG-CTCAGGGAGATAAG
29712090 GCTAGTGGCT
Statistics
Matches: 461, Mismatches: 68, Indels: 28
0.83 0.12 0.05
Matches are distributed among these distances:
297 2 0.00
298 364 0.79
299 17 0.04
300 5 0.01
303 1 0.00
305 1 0.00
307 1 0.00
308 70 0.15
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (297 bp):
ACCTATTACACTGCTGACCAGGGAGATAGGACTCACAATCTTCAACCTATTCCACTACTGACAAG
GGAGAGAGGATGCACCTAGTTCACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTC
CACTACTGACCAGGGAGATAAGACTACAAGCTTAAGCCTATTCCCTACTACCTAGAGAAGATAAG
ATTCACAATCTTCAACCTACTCCACTACTGCTCAGGGAGATAAGATCTGTAATTTTCAACCTACA
CCACTACTGCTCAGGGAGATAGGATTCACAATCTGCA
Found at i:29712174 original size:298 final size:287
Alignment explanation
Indices: 29711870--29712524 Score: 713
Period size: 298 Copynumber: 2.2 Consensus size: 287
29711860 TTGCTGACCA
* * * * * *
29711870 GGGAGATAGGACTCACAATCTTCAACCTATTCCACTGTTGAC-CAGGGAGAGAGGATTCACCTAT
1 GGGAGATAAGA-TCATAATTTTCAACCTACTCCACTGCTG-CTCAGGGAGATAGGATTCACCTAT
* * * * ** * *
29711934 TCCACTGCTGACTAGGGAGATAGGAC-CTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGA
64 TACACTGCTGACCAGAGAGATAGGACTC-ACAATCTTCAACCTATTACACTACTGACAAAGGAGA
29711998 TACGACTCACAATCTTCAACCTATTCCACTGCTAACCAGAGAGATATGACTTACAATCTTCAACC
128 T---A---A-AA--TTC-ACCTATTCCACTGCTAACCAGAGAGATATGACTTACAATCTTCAACC
* * *
29712063 TATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCTTACTACCTTGGGAA
183 TATTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAA
* *
29712128 GATAAGAATT-GCCGTCTTCGATCTGCTCTACGACTGCTTT
248 GATAAG-ATTCGCCATCTTCGATCTGCTCCACGACTGCTTT
* * * *
29712168 GGGAGATAAGATCTGTAATTTTCAACTTACTCCACTACTGCTCACGGAGATAGGATTCACAATCT
1 GGGAGATAAGATC-ATAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGG-------AT-T
*
29712233 ACAACCTATTACACTGCTGACCAGAGAGATAGGATTCACAATCTTCAACCTATTACACTACTGAC
57 -C-ACCTATTACACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTACACTACTGAC
* ** * * *
29712298 AAAGGAGATAAGATTCACCTATTTTACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTA
120 AAAGGAGATAAAATTCACCTATTCCACTGCTAACCAGAGAGATATGACTTACAATCTTCAACCTA
* * *
29712363 TTCAACTACTGACCAGAGAGGTAAGGCTAGTGGCTTAAATTTTCTTCCCTACTACCTTGGGAAGA
185 TTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGA
* *
29712428 TAAGATTCGCCATCTTTGATCTGCTCCACTACTGCTTT
250 TAAGATTCGCCATCTTCGATCTGCTCCACGACTGCTTT
* * *
29712466 GGGAAATAAGATTTATAATTTTCAACCTACTCCATTGCTGCTCAGGGAGATAGGATTCA
1 GGGAGATAAGA-TCATAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCA
29712525 GAATCTTCAA
Statistics
Matches: 300, Mismatches: 42, Indels: 40
0.79 0.11 0.10
Matches are distributed among these distances:
288 1 0.00
289 1 0.00
290 1 0.00
291 2 0.01
297 6 0.02
298 217 0.72
299 4 0.01
301 1 0.00
302 1 0.00
305 3 0.01
306 1 0.00
307 1 0.00
308 60 0.20
309 1 0.00
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (287 bp):
GGGAGATAAGATCATAATTTTCAACCTACTCCACTGCTGCTCAGGGAGATAGGATTCACCTATTA
CACTGCTGACCAGAGAGATAGGACTCACAATCTTCAACCTATTACACTACTGACAAAGGAGATAA
AATTCACCTATTCCACTGCTAACCAGAGAGATATGACTTACAATCTTCAACCTATTCAACTACTG
ACCAGAGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGATTCGCC
ATCTTCGATCTGCTCCACGACTGCTTT
Found at i:29712262 original size:44 final size:44
Alignment explanation
Indices: 29712213--29712315 Score: 154
Period size: 44 Copynumber: 2.3 Consensus size: 44
29712203 TACTGCTCAC
* *
29712213 GGAGATAGGATTCACAATCTACAACCTATTACACTGCTGAC-CA
1 GGAGATAGGATTCACAATCTACAACCTATTACACTACTGACAAA
*
29712256 GAGAGATAGGATTCACAATCTTCAACCTATTACACTACTGACAAA
1 G-GAGATAGGATTCACAATCTACAACCTATTACACTACTGACAAA
*
29712301 GGAGATAAGATTCAC
1 GGAGATAGGATTCAC
29712316 CTATTTTACT
Statistics
Matches: 54, Mismatches: 4, Indels: 3
0.89 0.07 0.05
Matches are distributed among these distances:
43 1 0.02
44 51 0.94
45 2 0.04
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (44 bp):
GGAGATAGGATTCACAATCTACAACCTATTACACTACTGACAAA
Found at i:29712378 original size:386 final size:386
Alignment explanation
Indices: 29711560--29712378 Score: 1187
Period size: 386 Copynumber: 2.1 Consensus size: 386
29711550 CAACCTCTTA
* * * *
29711560 CACTGCTGACCAGGGAGATAGGA-TTCACAATCTTCAACCTATTCCACTACTGACAAGGGAGATA
1 CACTGCTGACTAGGGAGATAGGACCT-ACAATCTTCAACCTATTCAACTACTGACCAGGGAGATA
* * * * *
29711624 -G------GA--TGC-ACCTAGTTCACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTA
65 CGACTCACAATCTTCAACCTAGTTCACTGCTAACCAGAGAGATATGACTTACAATCTTCAACCTA
* *
29711679 TTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAGTCTTCTTCCCTACTACCTTGGGAAGA
130 TTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGA
*
29711744 TAAGATTCGCCGTCTTCGATCTGCTCCACTACTGCTTTGGGAGATAAGATCTGTAATTTTCAACC
195 TAAGATTCGCCGTCTTCGATCTGCTCCACGACTGCTTTGGGAGATAAGATCTGTAATTTTCAACC
* * * * * * *
29711809 TACTGCACTGCTGCTCAGGGAGATAGGATTCACAATCTTCAACCTATTCCATTGCTGACCAGGGA
260 TACTCCACTACTGCTCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCAGAGA
* ** * * *
29711874 GATAGGACTCACAATCTTCAACCTATTCCACTGTTGACCAGGGAGAGAGGATTCACCTATTC
325 GATAGGACTCACAATCTTCAACCTATTACACTACTGACAAAGGAGAGAAGATTCACCTATTC
* **
29711936 CACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAC
1 CACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCAACTACTGACCAGGGAGATAC
29712001 GACTCACAATCTTCAACCTA-TTCCACTGCTAACCAGAGAGATATGACTTACAATCTTCAACCTA
66 GACTCACAATCTTCAACCTAGTT-CACTGCTAACCAGAGAGATATGACTTACAATCTTCAACCTA
*
29712065 TTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCTTACTACCTTGGGAAGA
130 TTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGA
*
29712130 TAAGAATT-GCCGTCTTCGATCTGCTCTACGACTGCTTTGGGAGATAAGATCTGTAATTTTCAAC
195 TAAG-ATTCGCCGTCTTCGATCTGCTCCACGACTGCTTTGGGAGATAAGATCTGTAATTTTCAAC
*
29712194 TTACTCCACTACTGCTCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCAGAG
259 CTACTCCACTACTGCTCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCAGAG
* * *
29712259 AGATAGGATTCACAATCTTCAACCTATTACACTACTGACAAAGGAGATAAGATTCACCTATTT
324 AGATAGGACTCACAATCTTCAACCTATTACACTACTGACAAAGGAGAGAAGATTCACCTATTC
* * *
29712322 TACTGCTGACTAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAG
1 CACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCAACTACTGACCAG
29712379 AGAGGTAAGG
Statistics
Matches: 392, Mismatches: 38, Indels: 16
0.88 0.09 0.04
Matches are distributed among these distances:
376 57 0.15
377 2 0.01
383 1 0.00
385 4 0.01
386 325 0.83
387 3 0.01
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (386 bp):
CACTGCTGACTAGGGAGATAGGACCTACAATCTTCAACCTATTCAACTACTGACCAGGGAGATAC
GACTCACAATCTTCAACCTAGTTCACTGCTAACCAGAGAGATATGACTTACAATCTTCAACCTAT
TCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTAAATCTACTTCCCTACTACCTTGGGAAGAT
AAGATTCGCCGTCTTCGATCTGCTCCACGACTGCTTTGGGAGATAAGATCTGTAATTTTCAACCT
ACTCCACTACTGCTCACGGAGATAGGATTCACAATCTACAACCTATTACACTGCTGACCAGAGAG
ATAGGACTCACAATCTTCAACCTATTACACTACTGACAAAGGAGAGAAGATTCACCTATTC
Found at i:29712499 original size:44 final size:44
Alignment explanation
Indices: 29712451--29712545 Score: 100
Period size: 44 Copynumber: 2.2 Consensus size: 44
29712441 CTTTGATCTG
** * * *
29712451 CTCCACTACTGCTTTGGGAAATAAGATTTATAATTTTCAACCTA
1 CTCCACTACTGCTCAGGGAAATAAGATTCAGAATCTTCAACCTA
* * * *
29712495 CTCCATTGCTGCTCAGGGAGATAGGATTCAGAATCTTCAACCTA
1 CTCCACTACTGCTCAGGGAAATAAGATTCAGAATCTTCAACCTA
*
29712539 TTCCACT
1 CTCCACT
29712546 GCTGACCAAA
Statistics
Matches: 40, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.28, C:0.24, G:0.15, T:0.33
Consensus pattern (44 bp):
CTCCACTACTGCTCAGGGAAATAAGATTCAGAATCTTCAACCTA
Found at i:29712579 original size:34 final size:34
Alignment explanation
Indices: 29712534--29712598 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
29712524 AGAATCTTCA
*
29712534 ACCTATTCCACTGCTGACCAAAGAGATAGGATTC
1 ACCTATCCCACTGCTGACCAAAGAGATAGGATTC
**
29712568 ACCTATCCCACTGCTGACCAGGGAGATAGGA
1 ACCTATCCCACTGCTGACCAAAGAGATAGGA
29712599 CTTACAATCT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.20
Consensus pattern (34 bp):
ACCTATCCCACTGCTGACCAAAGAGATAGGATTC
Found at i:29712618 original size:298 final size:298
Alignment explanation
Indices: 29711972--29712639 Score: 810
Period size: 298 Copynumber: 2.2 Consensus size: 298
29711962 ACAATCTTCA
* * * * *
29711972 ACCTATTCCACTGTTGACCAGGGAGATACGACTCACAATCTTCAACCTATTCCACTGCTAACCAG
1 ACCTATCCCACTGATGACCAGGGAGATAGGACTTACAATCTTTAACCTATTCCACTGCTAACCAG
* *
29712037 AGAGATATGACTTACAATCTTCAACCTATTCCACTACTGACCAGGGAGATAAGGCTAGTGGCTTA
66 AGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTA
* * *
29712102 AATCTACTTCCTTACTACCTTGGGAAGATAAGAATTGCCGTCTTCGATCTGCTCTACGACTGCTT
131 AATCTACTTCCCTACTACCTTGGGAAGATAAGAATTGCCATCTTCGATCTGCTCCACGACTGCTT
* * *
29712167 TGGGAGATAAGATCTGTAATTTTCAACTTACTCCACTACTGCTCACGGAGATAGGATTCACAATC
196 TGGGAAATAAGATCTATAATTTTCAACCTACTCCACTACTGCTCACGGAGATAGGATTCACAATC
*
29712232 TACAACCTATTACACTGCTGACCAGAGAGATAGGATTC
261 TACAACCTATTACACTGCTGACCAAAGAGATAGGATTC
* * * ** * * ** * **
29712270 A-CAATCTTCAACCT-ATTACACTACTGACAAAGGAGATA-AGA---TTCACCTATTTTACTGCT
1 ACCTATC--CCA-CTGATGAC-C-AGGGAGATAGGACTTACA-ATCTTTAACCTATTCCACTGCT
* * * *
29712329 GACTAGGGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAGAGAGGTAAGGCTAGT
60 AACCAGAGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAGAGAGATAAGGCTAGT
* * * *
29712394 GGCTTAAATTTTCTTCCCTACTACCTTGGGAAGATAAG-ATTCGCCATCTTTGATCTGCTCCACT
125 GGCTTAAATCTACTTCCCTACTACCTTGGGAAGATAAGAATT-GCCATCTTCGATCTGCTCCACG
* * * *
29712458 ACTGCTTTGGGAAATAAGATTTATAATTTTCAACCTACTCCATTGCTGCTCAGGGAGATAGGATT
189 ACTGCTTTGGGAAATAAGATCTATAATTTTCAACCTACTCCACTACTGCTCACGGAGATAGGATT
* * *
29712523 CAGAATCTTCAACCTATTCCACTGCTGACCAAAGAGATAGGATTC
254 CACAATCTACAACCTATTACACTGCTGACCAAAGAGATAGGATTC
* * * *
29712568 ACCTATCCCACTGCTGACCAGGGAGATAGGACTTACAATCTTTAACCTATTCCTCTACTGACCAG
1 ACCTATCCCACTGATGACCAGGGAGATAGGACTTACAATCTTTAACCTATTCCACTGCTAACCAG
*
29712633 GGAGATA
66 AGAGATA
29712640 AGGCTAGTGG
Statistics
Matches: 300, Mismatches: 57, Indels: 26
0.78 0.15 0.07
Matches are distributed among these distances:
295 11 0.04
296 4 0.01
297 11 0.04
298 252 0.84
299 9 0.03
300 4 0.01
301 9 0.03
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (298 bp):
ACCTATCCCACTGATGACCAGGGAGATAGGACTTACAATCTTTAACCTATTCCACTGCTAACCAG
AGAGATATGACTTACAATCTTCAACCTATTCAACTACTGACCAGAGAGATAAGGCTAGTGGCTTA
AATCTACTTCCCTACTACCTTGGGAAGATAAGAATTGCCATCTTCGATCTGCTCCACGACTGCTT
TGGGAAATAAGATCTATAATTTTCAACCTACTCCACTACTGCTCACGGAGATAGGATTCACAATC
TACAACCTATTACACTGCTGACCAAAGAGATAGGATTC
Found at i:29712766 original size:44 final size:44
Alignment explanation
Indices: 29712718--29713686 Score: 166
Period size: 44 Copynumber: 22.3 Consensus size: 44
29712708 TACTATTGCT
*
29712718 TAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGAC
1 TAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTACTGAC
* *
29712762 TAGGGAGATAGGA-CT-TACAATCTTCAACCTATTCCACTACTAAC
1 TAGGGAGATAAGATCTGT--AATCTTCAACCTATTCCACTACTGAC
* * * * ** * *
29712806 CAGGAAGACAAG-GCTTGT-GGCTTAAATCTACTTCC-CTACT-ACC
1 TAGGGAGATAAGATC-TGTAATCTTCAACCTA-TTCCACTACTGA-C
* * * * * * * *
29712849 TAGGAAAGATAAGATTTGCT-GTCTTCGATCTACTCTACTATTG-C
1 TAGG-GAGATAAGATCTG-TAATCTTCAACCTATTCCACTACTGAC
* ** * * * *
29712893 TTAGGGCGATAACTTTTGTAATTTTCAACCTA-TCCAGTGCT-AC
1 -TAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTACTGAC
* ** * * *
29712936 TCAGGGAGATAGGAT-TCACAATTTTCAACCTATTTCACTATTGAC
1 T-AGGGAGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * ** * *
29712981 GAGGGAGATAGGA-CTCACAATCTTCAACCTATTCCACTGCTGGC
1 TAGGGAGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * *
29713025 CATGGAGATAAGA-CTTATAATCTTCAACCTATTCCACTACTGAC
1 TAGGGAGATAAGATC-TGTAATCTTCAACCTATTCCACTACTGAC
* * ** * * *
29713069 TAGTGAGATAAG-GCTAGT-GGCTTAAATCTACTT-CTCTACT-ACC
1 TAGGGAGATAAGATCT-GTAATCTTCAACCTA-TTCCACTACTGA-C
* *** * * * ** * *
29713112 TTGGGAAGATAAGAATC-GCCGTTTTCGATCTGCTCTACTACT-TC
1 TAGGG-AGATAAG-ATCTGTAATCTTCAACCTATTCCACTACTGAC
* * * **
29713156 TTAGGGAGAAAAGATCGGTAATTTTCAACCT-TCTCCACTGTTG-C
1 -TAGGGAGATAAGATCTGTAATCTTCAACCTAT-TCCACTACTGAC
* ** *
29713200 TAAGGGAGATAGGAT-TCACAATCTTCAACCTATTCCACTGCTGAC
1 T-AGGGAGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * * *
29713245 CAGGGAGATAGGA-CT-TACAATCTTCAACCTATTTCACTACCGAC
1 TAGGGAGATAAGATCTGT--AATCTTCAACCTATTCCACTACTGAC
* ** * * *
29713289 CAGGGAGATAAG-TCTAGT-GGCTTAAATCTGCTTCC-CTACT-ACC
1 TAGGGAGATAAGATCT-GTAATCTTCAACCT-ATTCCACTACTGA-C
* *** * * ** * *
29713332 TCGGGAAGATAAGAT-TCGCCGTCTTCGATCTGCTGCACTGCTG-C
1 TAGGG-AGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* *
29713376 TTAGGGAGATAAGATCTGTAATTTTCAACCTACTT-CATTACTG-C
1 -TAGGGAGATAAGATCTGTAATCTTCAACCTA-TTCCACTACTGAC
** * * *
29713420 TCAGGGAGAT-AGAAT-TCACAATCTTCAGCCTATTCTACTGCTGAC
1 T-AGGGAGATAAG-ATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * ** * * *
29713465 CAGGGAGATAGGAT-TCACAATCTTTAACCTATTCCACTGCCGAC
1 TAGGGAGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * *
29713509 CAGGGAGAT-AG----G--A--TTC-ATCTATTCCACTACTAAC
1 TAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTACTGAC
* * **
29713543 CAGGGAGATAGGA-CT-TACAATCTTCAACCTATTCCACTGTTGAC
1 TAGGGAGATAAGATCTGT--AATCTTCAACCTATTCCACTACTGAC
* * ** * *
29713587 CAGGGAGATAGGA-CTCACAATCTTCAACCTATTCCGCTGCTGAC
1 TAGGGAGATAAGATCT-GTAATCTTCAACCTATTCCACTACTGAC
* * *
29713631 CAGGGAGATAGGA-CT-TACAATCTTCAACCTGTTCCACTACTGAC
1 TAGGGAGATAAGATCTGT--AATCTTCAACCTATTCCACTACTGAC
*
29713675 CAGGGAGATAAG
1 TAGGGAGATAAG
29713687 GCTAGTGGCT
Statistics
Matches: 687, Mismatches: 163, Indels: 150
0.69 0.16 0.15
Matches are distributed among these distances:
34 23 0.03
35 3 0.00
37 1 0.00
41 1 0.00
42 6 0.01
43 96 0.14
44 493 0.72
45 61 0.09
46 3 0.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (44 bp):
TAGGGAGATAAGATCTGTAATCTTCAACCTATTCCACTACTGAC
Found at i:29713221 original size:220 final size:221
Alignment explanation
Indices: 29712568--29713518 Score: 961
Period size: 220 Copynumber: 4.3 Consensus size: 221
29712558 GATAGGATTC
* * *
29712568 ACCTATCCCACTGCTGACCAGGGAGATAGGACTTACAATCTTTAACCTATTCCTCTACTGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
*
29712633 GGAGATAAGGCTAGTGGCTTAAATCTACTT-TCCTACTACCTTGGGAAGATAAGAATCGCCGTCT
66 GGAGATAAGGCTAGTGGCTTAAATCTACTTCTACTACTACCTTGGGAAGATAAGAATCGCCGTCT
29712697 TCGATCTGCTCTACTA-TTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGA
131 TCGATCTGCTCTACTACTT-CTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGA
29712761 CTAGGGAGATAGGACTT-ACAATCTTCA
195 CTAGGGAGATAGGA-TTCACAATCTTCA
* * * * **** * *
29712788 ACCTATTCCACTACTAACCAGGAAGACAAGG-CTT-GTGGCTTAAATCTACTTCC-CTACT-ACC
1 ACCTATTCCACTGCTGACCAGGGAGA-TAGGACTTACAATCTTCAACCTA-TTCCACTACTGACC
* ** * * ** ** * *** *
29712849 TAGGAAAGATAAGATTTGCTGTCTTCGATCTAC-TCTACTA-TTGCTTAGGG-CGATAACTTTTG
64 -AGG-GAGATAAGGCTAG-TGGCTTAAATCTACTTCTACTACTACCTT-GGGAAGATAAGAATCG
*** * * * * * * * * * * ** *
29712911 TAATTTTCAACCT-ATCCAGTGCTACTCAGGGAGATAGGAT-TCACAATTTTCAACCTATTTCAC
125 CCGTCTTCGATCTGCTCTACTACTTCTTAGGGAGATAAGATCT-GTAATTTTCAACCTATTCCAC
* * *
29712974 TATTGACGAGGGAGATAGGACTCACAATCTTCA
189 TACTGACTAGGGAGATAGGATTCACAATCTTCA
* * * * *
29713007 ACCTATTCCACTGCTGGCCATGGAGATAAGACTTATAATCTTCAACCTATTCCACTACTGACTAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
* *
29713072 TGAGATAAGGCTAGTGGCTTAAATCTACTTCT-CTACTACCTTGGGAAGATAAGAATCGCCGTTT
66 GGAGATAAGGCTAGTGGCTTAAATCTACTTCTACTACTACCTTGGGAAGATAAGAATCGCCGTCT
* * **
29713136 TCGATCTGCTCTACTACTTCTTAGGGAGAAAAGATCGGTAATTTTCAACCT-TCTCCACTGTTG-
131 TCGATCTGCTCTACTACTTCTTAGGGAGATAAGATCTGTAATTTTCAACCTAT-TCCACTACTGA
29713199 CTAAGGGAGATAGGATTCACAATCTTCA
195 CT-AGGGAGATAGGATTCACAATCTTCA
* *
29713227 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTTCACTACCGACCAG
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
* * * * *
29713292 GGAGATAAGTCTAGTGGCTTAAATCTGCTTC-CCTACTACCTCGGGAAGATAAGATTCGCCGTCT
66 GGAGATAAGGCTAGTGGCTTAAATCTACTTCTACTACTACCTTGGGAAGATAAGAATCGCCGTCT
* * *
29713356 TCGATCTGCTGC-ACTGCTGCTTAGGGAGATAAGATCTGTAATTTTCAACCTACTT-CATTACTG
131 TCGATCTGCT-CTACTACTTCTTAGGGAGATAAGATCTGTAATTTTCAACCTA-TTCCACTACTG
*
29713419 -CTCAGGGAGATAGAATTCACAATCTTCA
194 ACT-AGGGAGATAGGATTCACAATCTTCA
* * * * *
29713447 GCCTATTCTACTGCTGACCAGGGAGATAGGA-TTCACAATCTTTAACCTATTCCACTGCCGACCA
1 ACCTATTCCACTGCTGACCAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTACTGACCA
29713511 GGGAGATA
65 GGGAGATA
29713519 GGATTCATCT
Statistics
Matches: 584, Mismatches: 121, Indels: 52
0.77 0.16 0.07
Matches are distributed among these distances:
218 24 0.04
219 143 0.24
220 391 0.67
221 25 0.04
222 1 0.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (221 bp):
ACCTATTCCACTGCTGACCAGGGAGATAGGACTTACAATCTTCAACCTATTCCACTACTGACCAG
GGAGATAAGGCTAGTGGCTTAAATCTACTTCTACTACTACCTTGGGAAGATAAGAATCGCCGTCT
TCGATCTGCTCTACTACTTCTTAGGGAGATAAGATCTGTAATTTTCAACCTATTCCACTACTGAC
TAGGGAGATAGGATTCACAATCTTCA
Found at i:29713638 original size:122 final size:122
Alignment explanation
Indices: 29713421--29713643 Score: 358
Period size: 122 Copynumber: 1.8 Consensus size: 122
29713411 CATTACTGCT
* * *
29713421 CAGGGAGATAGAATTCACAATCTTCAGCCTATTCTACTGCTGACCAGGGAGATAGGATTCACAAT
1 CAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAAT
*
29713486 CTTTAACCTATTCCACTGCCGACCAGGGAGATAGGATTCATCTATTCCACTACTAAC
66 CTTCAACCTATTCCACTGCCGACCAGGGAGATAGGATTCATCTATTCCACTACTAAC
* *
29713543 CAGGGAGATAGGACTT-ACAATCTTCAACCTATTCCACTGTTGACCAGGGAGATAGGACTCACAA
1 CAGGGAGATA-GAATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAA
* *
29713607 TCTTCAACCTATTCCGCTGCTGACCAGGGAGATAGGA
65 TCTTCAACCTATTCCACTGCCGACCAGGGAGATAGGA
29713644 CTTACAATCT
Statistics
Matches: 92, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
122 88 0.96
123 4 0.04
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (122 bp):
CAGGGAGATAGAATTCACAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAGGACTCACAAT
CTTCAACCTATTCCACTGCCGACCAGGGAGATAGGATTCATCTATTCCACTACTAAC
Found at i:29714880 original size:15 final size:15
Alignment explanation
Indices: 29714860--29714888 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
29714850 ATACCTCACA
29714860 CACCGTGTTATCAAT
1 CACCGTGTTATCAAT
29714875 CACCGTGTTATCAA
1 CACCGTGTTATCAA
29714889 GCAACAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.28, G:0.14, T:0.31
Consensus pattern (15 bp):
CACCGTGTTATCAAT
Found at i:29723668 original size:50 final size:49
Alignment explanation
Indices: 29723603--29723880 Score: 188
Period size: 50 Copynumber: 5.8 Consensus size: 49
29723593 GGAAGATTTA
* * *
29723603 ATCCGACCCATTGCAACTTTAGGGGTATAGGATTTGTAGTTGTAGCTTC
1 ATCCAACCCACTGCAACTTCAGGGGTATAGGATTTGTAGTTGTAGCTTC
*
29723652 ATTCCAACCCACTGCAACTTCAGGGGGTATA-GA-----AATTGTAGCTTC
1 A-TCCAACCCACTGCAACTTCA-GGGGTATAGGATTTGTAGTTGTAGCTTC
* * * ***
29723697 AATCCGATCCACTGCAACTTTAGGAACATAGGA----T--TTGTAGCTTC
1 -ATCCAACCCACTGCAACTTCAGGGGTATAGGATTTGTAGTTGTAGCTTC
** * * * * *
29723741 ATCTTACTCCACTGCAACTTTAGGGAG-ATAAGATTCGTTA-TGGTAGATTC
1 ATCCAAC-CCACTGCAACTTCAGGG-GTATAGGATTTG-TAGTTGTAGCTTC
* * * *
29723791 GACCCGACCCACTACAACTTCAAGGGTATAGGATTTGTAGTTGTAGCTTC
1 -ATCCAACCCACTGCAACTTCAGGGGTATAGGATTTGTAGTTGTAGCTTC
*
29723841 ATTCCAACCCACTGCAACTTCAGGGGTATAGGAATTGTAG
1 A-TCCAACCCACTGCAACTTCAGGGGTATAGGATTTGTAG
29723881 CTTCAATCTG
Statistics
Matches: 179, Mismatches: 33, Indels: 33
0.73 0.13 0.13
Matches are distributed among these distances:
43 4 0.02
44 36 0.20
45 30 0.17
46 1 0.01
49 6 0.03
50 90 0.50
51 12 0.07
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (49 bp):
ATCCAACCCACTGCAACTTCAGGGGTATAGGATTTGTAGTTGTAGCTTC
Found at i:29723821 original size:189 final size:187
Alignment explanation
Indices: 29723496--29724015 Score: 695
Period size: 189 Copynumber: 2.8 Consensus size: 187
29723486 GGGTTATTGG
* * * * *
29723496 AATTTTAGCTTCAATCTGATCCACTACAACTTCAGGGATATAGGATTCGTAGCTTCAATCCAATC
1 AATTGTAGCTTCAATCTGATCCACTGCAACTTTAGGGATATAGGATTTGTAGCTTC-ATCTAATC
* * * * * * *
29723561 CACTACAACTTCAGGGAGATAAGATTCACTATGGAAGATTTAATCCGACCCATTGCAACTTTAGG
65 CACTACAACTTTAGGGAGATAAGATTCGCTATGGTAGATTTAATCCGACCCACTACAACTTCAAG
29723626 GGTATAGGATTTGTAGTTGTAGCTTCATTCCAACCCACTGCAACTTCAGGGGGTATAGA
130 GGTATAGGATTTGTAGTTGTAGCTTCATTCCAACCCACTGCAACTTCA-GGGGTATAGA
* * * *
29723685 AATTGTAGCTTCAATCCGATCCACTGCAACTTTAGGAACATAGGATTTGTAGCTTCATCTTACTC
1 AATTGTAGCTTCAATCTGATCCACTGCAACTTTAGGGATATAGGATTTGTAGCTTCATC-TAATC
* * ** *
29723750 CACTGCAACTTTAGGGAGATAAGATTCGTTATGGTAGATTCGACCCGACCCACTACAACTTCAAG
65 CACTACAACTTTAGGGAGATAAGATTCGCTATGGTAGATTTAATCCGACCCACTACAACTTCAAG
*
29723815 GGTATAGGATTTGTAGTTGTAGCTTCATTCCAACCCACTGCAACTTCAGGGGTATAGG
130 GGTATAGGATTTGTAGTTGTAGCTTCATTCCAACCCACTGCAACTTCAGGGGTATAGA
* * * * **
29723873 AATTGTAGCTTCAATCTGATCTACTGTAACTTTAGGGGTATATGATTTGTAGCTTCATCCTGGTC
1 AATTGTAGCTTCAATCTGATCCACTGCAACTTTAGGGATATAGGATTTGTAGCTTCAT-CTAATC
* *
29723938 CACTACAACTTTAGGGAG--AAGATTTGCTATGGTA-ACTTTAATACGACCCACTACAACTTCAA
65 CACTACAACTTTAGGGAGATAAGATTCGCTATGGTAGA-TTTAATCCGACCCACTACAACTTCAA
*
29724000 GGGTATAGAATTTGTA
129 GGGTATAGGATTTGTA
29724016 CTGTTTCATT
Statistics
Matches: 289, Mismatches: 39, Indels: 9
0.86 0.12 0.03
Matches are distributed among these distances:
185 1 0.00
186 51 0.18
188 83 0.29
189 154 0.53
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (187 bp):
AATTGTAGCTTCAATCTGATCCACTGCAACTTTAGGGATATAGGATTTGTAGCTTCATCTAATCC
ACTACAACTTTAGGGAGATAAGATTCGCTATGGTAGATTTAATCCGACCCACTACAACTTCAAGG
GTATAGGATTTGTAGTTGTAGCTTCATTCCAACCCACTGCAACTTCAGGGGTATAGA
Found at i:29723948 original size:44 final size:44
Alignment explanation
Indices: 29723494--29723953 Score: 183
Period size: 44 Copynumber: 9.9 Consensus size: 44
29723484 ATGGGTTATT
* * * *
29723494 GGAATTTTAGCTTCAATCTGATCCACTACAACTTCAGGGATATA
1 GGAATTGTAGCTTCAATCTGATCCACTGCAACTTTAGGGGTATA
** * *
29723538 GG-ATTCGTAGCTTCAATCCAATCCACTACAACTTCAGGGAG-ATA
1 GGAATT-GTAGCTTCAATCTGATCCACTGCAACTTTAGGG-GTATA
* * * * * * *
29723582 AGATTCACTATGGAAGATTTAATCCGACCCATTGCAACTTTAGGGGTATA
1 GGA---A-T-T-GTAGCTTCAATCTGATCCACTGCAACTTTAGGGGTATA
* ** * *
29723632 GGATTTGTAGTTGTAGCTTCATTCCAACCCACTGCAACTTCAGGGGGTATA
1 GGA-----A-TTGTAGCTTCAATCTGATCCACTGCAACTTTA-GGGGTATA
* * ***
29723683 GAAATTGTAGCTTCAATCCGATCCACTGCAACTTTAGGAACATA
1 GGAATTGTAGCTTCAATCTGATCCACTGCAACTTTAGGGGTATA
* *
29723727 GGATTTGTAGCTTC-ATCTTACTCCACTGCAACTTTAGGGAG-ATAA
1 GGAATTGTAGCTTCAATCTGA-TCCACTGCAACTTTAGGG-GTAT-A
* * * * * * * * * *
29723772 GATTCGTTATGGTAGATTCGACCCGACCCACTACAACTTCAAGGGTATA
1 G----G-AATTGTAGCTTCAATCTGATCCACTGCAACTTTAGGGGTATA
* ** * *
29723821 GGATTTGTAGTTGTAGCTTCATTCCAACCCACTGCAACTTCAGGGGTATA
1 GGA-----A-TTGTAGCTTCAATCTGATCCACTGCAACTTTAGGGGTATA
* *
29723871 GGAATTGTAGCTTCAATCTGATCTACTGTAACTTTAGGGGTATA
1 GGAATTGTAGCTTCAATCTGATCCACTGCAACTTTAGGGGTATA
* * * *
29723915 TGATTTGTAGCTTC-ATCCTGGTCCACTACAACTTTAGGG
1 GGAATTGTAGCTTCAAT-CTGATCCACTGCAACTTTAGGG
29723954 AGAAGATTTG
Statistics
Matches: 315, Mismatches: 72, Indels: 58
0.71 0.16 0.13
Matches are distributed among these distances:
43 9 0.03
44 135 0.43
45 32 0.10
46 1 0.00
48 1 0.00
49 7 0.02
50 113 0.36
51 14 0.04
52 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (44 bp):
GGAATTGTAGCTTCAATCTGATCCACTGCAACTTTAGGGGTATA
Found at i:29727401 original size:43 final size:43
Alignment explanation
Indices: 29727301--29727418 Score: 166
Period size: 43 Copynumber: 2.8 Consensus size: 43
29727291 CTTTTGAAAG
** * *
29727301 CGCCGCTAAAGACCATGATTTTTAGCGGCGC-ATTCCTACAAA
1 CGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAA
*
29727343 CGCCGCTAAAGACCATGACCTTTAACGGCGCTTTTCCCACAAA
1 CGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAA
* *
29727386 CGCCGCTAAATACCATGACCTTTAGCGACGCTT
1 CGCCGCTAAAGACCATGACCTTTAGCGGCGCTT
29727419 CTACCACACA
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 28 0.42
43 39 0.58
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.23
Consensus pattern (43 bp):
CGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCACAAA
Found at i:29727526 original size:41 final size:42
Alignment explanation
Indices: 29727448--29727526 Score: 108
Period size: 41 Copynumber: 1.9 Consensus size: 42
29727438 ATCATAACTT
* * *
29727448 TTTTAGTGGCGCTTATATTACAAACGCCGCTATAAAAACGAC
1 TTTTAGTGACGCTTATATTACAAACGCCACTAAAAAAACGAC
29727490 TTTTAGTGACGCTT-T-TTCACAAACGCCACTAAAAAAA
1 TTTTAGTGACGCTTATATT-ACAAACGCCACTAAAAAAA
29727527 TAACTTCTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
40 2 0.06
41 18 0.55
42 13 0.39
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (42 bp):
TTTTAGTGACGCTTATATTACAAACGCCACTAAAAAAACGAC
Found at i:29729393 original size:5 final size:5
Alignment explanation
Indices: 29729349--29729375 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
29729339 GATTCTTGTT
29729349 TTTTA TTTTA TTTTA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTTTA TTTTA TT
29729376 GGTAAAATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTTTA
Found at i:29729562 original size:25 final size:24
Alignment explanation
Indices: 29729520--29729571 Score: 70
Period size: 25 Copynumber: 2.1 Consensus size: 24
29729510 ATTAACATAT
29729520 AAAATAGTACAAATTAAAACTAAAA
1 AAAATAGTACAAATTAAAA-TAAAA
*
29729545 AAAATATTAACAAA-TAAAATAAAA
1 AAAATAGT-ACAAATTAAAATAAAA
29729569 AAA
1 AAA
29729572 GTTTTTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
24 8 0.32
25 12 0.48
26 5 0.20
ACGTcount: A:0.73, C:0.06, G:0.02, T:0.19
Consensus pattern (24 bp):
AAAATAGTACAAATTAAAATAAAA
Found at i:29732038 original size:109 final size:106
Alignment explanation
Indices: 29731925--29732131 Score: 333
Period size: 109 Copynumber: 1.9 Consensus size: 106
29731915 CGCAAAAAAA
* **
29731925 ATTTCATTTTGAACAAAATGACGTCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTTATA
1 ATTTCATTTTCAACAAAATGACACCGTTTTGCTATGCTAAAAA-TTTTTATTTTA-TTTTTTATA
* *
29731990 TATTGATTTGTTTTTTGCGGCGTTTTTTATAAAAAAACACCGCT
64 AATTGATTTATTTTTTGCGGCGTTTTTTA-AAAAAAACACCGCT
*
29732034 ATTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATAAA
1 ATTTCATTTTCAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATAAA
29732099 TTGATTTATTTTTTGCGGCGTTTTTTAAAAAAA
66 TTGATTTATTTTTTGCGGCGTTTTTTAAAAAAA
29732132 CGCCGGTATT
Statistics
Matches: 92, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
106 6 0.07
107 36 0.39
108 11 0.12
109 39 0.42
ACGTcount: A:0.29, C:0.11, G:0.11, T:0.49
Consensus pattern (106 bp):
ATTTCATTTTCAACAAAATGACACCGTTTTGCTATGCTAAAAATTTTTATTTTATTTTTTATAAA
TTGATTTATTTTTTGCGGCGTTTTTTAAAAAAAACACCGCT
Found at i:29732240 original size:260 final size:261
Alignment explanation
Indices: 29731769--29732524 Score: 1241
Period size: 260 Copynumber: 2.9 Consensus size: 261
29731759 TTTTTTGCGG
* *
29731769 GCAATTTTATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAAATGTTTATTTTATTTTTTT
1 GCAATTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTT
* * *
29731834 ATAAATTGATTTATTTTTTGTGGCGTTTTTAAAAAAAACGCCGCTATTTCTTACCTTTAGCGGCG
66 ATAAATTGATTTATTTTTTGCGGCGTTTTTTAAAAAAACGCCGCTATTGCTTACCTTTAGCGGC-
* *
29731899 GTTTTT-TGAGAAACGCCGCAAAAAAAATTTCATTTTGAACAAAATGACGTCGTTTTGCTATGCT
130 GTTTTTATGAGAAACGCCGCAAAAAAATTTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCT
29731963 AAAAATTTTTTATTTTATTTTTTTATATATTGATTTGTTTTTTGCGGCGTTTTTTATAAAAAAAC
195 AAAAATTTTTTATTTTATTTTTTTATATATTGATTTGTTTTTTGCGGCGTTTTTT-TAAAAAAAC
29732028 ACC
259 ACC
*
29732031 GCTATTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCT-AAAAATTTTTATTTTA-TTTTTT
1 GCAATTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTT
*
29732094 ATAAATTGATTTATTTTTTGCGGCGTTTTTTAAAAAAACGCCGGTATTGCTTACCTTTAGCGGCG
66 ATAAATTGATTTATTTTTTGCGGCGTTTTTTAAAAAAACGCCGCTATTGCTTACCTTTAGCGGCG
**
29732159 TTTTTATGAGAAACGCCGCAAAAATTTTTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTA
131 TTTTTATGAGAAACGCCGCAAAAAAATTTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTA
* *
29732224 AAAATTTTTTATTTTATTTTTTATATATATTGATTTGTTTTTTGCGGCGTTTTTTTATAAAAACG
196 AAAATTTTTTATTTTATTTTTT-TATATATTGATTTGTTTTTTGCGGCGTTTTTTTAAAAAAACA
29732289 CC
260 CC
29732291 GCAATTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTT
1 GCAATTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTT
* *
29732356 ATAAATTGATTTATTTTTTTGCGGGGTTTTTTAAAAAAACGACGCCGCTATTGCTTACCTTTAAC
66 ATAAATTGATTTA-TTTTTTGCGGCGTTTTTT-AAAAAA--ACGCCGCTATTGCTTACCTTTAGC
*
29732421 GGCATTTTTATGAGAAACGCCGCAAAAAAAATTTTCATTTTGAACAAAATGACGCCGTTTTGCTA
127 GGCGTTTTTATGAGAAACGCCGC-AAAAAAATTTTCATTTTGAACAAAATGACGCCGTTTTGCTA
* * *
29732486 TGCTAAAATTTTTTTATTTT-TATTTTTATAAATTGATTT
191 TGCTAAAAATTTTTTATTTTATTTTTTTATATATTGATTT
29732525 CTTATAAAAT
Statistics
Matches: 462, Mismatches: 23, Indels: 15
0.92 0.05 0.03
Matches are distributed among these distances:
259 6 0.01
260 193 0.42
261 63 0.14
262 58 0.13
263 17 0.04
264 6 0.01
265 12 0.03
266 49 0.11
267 58 0.13
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.45
Consensus pattern (261 bp):
GCAATTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTT
ATAAATTGATTTATTTTTTGCGGCGTTTTTTAAAAAAACGCCGCTATTGCTTACCTTTAGCGGCG
TTTTTATGAGAAACGCCGCAAAAAAATTTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTA
AAAATTTTTTATTTTATTTTTTTATATATTGATTTGTTTTTTGCGGCGTTTTTTTAAAAAAACAC
C
Found at i:29732312 original size:109 final size:108
Alignment explanation
Indices: 29732186--29732396 Score: 325
Period size: 109 Copynumber: 1.9 Consensus size: 108
29732176 GCAAAAATTT
* * *
29732186 TTTCATTTTGAACAAAATGACGCCGTTTTGCTATGCTAAAAATTTTTTATTTTATTTTTTATATA
1 TTTCATTTTCAACAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTT-TATA
* * *
29732251 TATTGATTT-GTTTTTTGCGGCGTTTTTTTATAAAAACGCCGCAA
65 AATTGATTTAGTTTTTTGCGG-GGTTTTTTAAAAAAACGCCGCAA
*
29732295 TTTCATTTTCAGCAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTTATAA
1 TTTCATTTTCAACAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTTATAA
*
29732360 ATTGATTTATTTTTTTGCGGGGTTTTTTAAAAAAACG
66 ATTGATTTAGTTTTTTGCGGGGTTTTTTAAAAAAACG
29732397 ACGCCGCTAT
Statistics
Matches: 93, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
108 27 0.29
109 66 0.71
ACGTcount: A:0.28, C:0.11, G:0.12, T:0.49
Consensus pattern (108 bp):
TTTCATTTTCAACAAAATGACACCGTTTTGCTATGCTAAAAAATTTTTATTTTATTTTTTTATAA
ATTGATTTAGTTTTTTGCGGGGTTTTTTAAAAAAACGCCGCAA
Found at i:29733099 original size:15 final size:14
Alignment explanation
Indices: 29733082--29733152 Score: 65
Period size: 14 Copynumber: 4.9 Consensus size: 14
29733072 ATCCCTGAAT
*
29733082 CCCTAAACCTTAAAT
1 CCCTAAACCTT-AAC
29733097 CCCT-AACTCTTAAC
1 CCCTAAAC-CTTAAC
*
29733111 CCCT-AACATCTAAC
1 CCCTAAACCT-TAAC
*
29733125 CCCTAAACCCCTAAC
1 CCCTAAA-CCTTAAC
29733140 CCCTAAACCTTAA
1 CCCTAAACCTTAA
29733153 ATCCCAACCC
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
13 1 0.02
14 25 0.53
15 20 0.43
16 1 0.02
ACGTcount: A:0.35, C:0.42, G:0.00, T:0.23
Consensus pattern (14 bp):
CCCTAAACCTTAAC
Found at i:29733117 original size:7 final size:7
Alignment explanation
Indices: 29733097--29733145 Score: 53
Period size: 7 Copynumber: 6.9 Consensus size: 7
29733087 AACCTTAAAT
29733097 CCCTAAC
1 CCCTAAC
* *
29733104 TCTTAAC
1 CCCTAAC
29733111 CCCTAAC
1 CCCTAAC
**
29733118 ATCTAAC
1 CCCTAAC
29733125 CCCTAAAC
1 CCCT-AAC
29733133 CCCTAAC
1 CCCTAAC
29733140 CCCTAA
1 CCCTAA
29733146 ACCTTAAATC
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
7 26 0.79
8 7 0.21
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (7 bp):
CCCTAAC
Found at i:29733145 original size:22 final size:22
Alignment explanation
Indices: 29733108--29733169 Score: 63
Period size: 22 Copynumber: 2.9 Consensus size: 22
29733098 CCTAACTCTT
** *
29733108 AACCCCTAACATCTAACCCCTA
1 AACCCCTAACCCCTAAACCCTA
*
29733130 AACCCCTAACCCCTAAACCTTA
1 AACCCCTAACCCCTAAACCCTA
* *
29733152 AATCCC-AACCCTTAAACC
1 AACCCCTAACCCCTAAACC
29733170 ATAATCCCTA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
21 11 0.32
22 23 0.68
ACGTcount: A:0.37, C:0.45, G:0.00, T:0.18
Consensus pattern (22 bp):
AACCCCTAACCCCTAAACCCTA
Found at i:29733167 original size:21 final size:22
Alignment explanation
Indices: 29733128--29733180 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
29733118 ATCTAACCCC
* *
29733128 TAAACCCCTAACCCCTAAACCT
1 TAAATCCCTAACCCCTAAACCA
*
29733150 TAAATCCC-AACCCTTAAACCA
1 TAAATCCCTAACCCCTAAACCA
29733171 T-AATCCCTAA
1 TAAATCCCTAA
29733181 TTCATAATCC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 6 0.22
21 14 0.52
22 7 0.26
ACGTcount: A:0.40, C:0.40, G:0.00, T:0.21
Consensus pattern (22 bp):
TAAATCCCTAACCCCTAAACCA
Found at i:29733186 original size:14 final size:14
Alignment explanation
Indices: 29733168--29733209 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
29733158 AACCCTTAAA
29733168 CCATAATCCCTAAT
1 CCATAATCCCTAAT
*
29733182 TCATAATCCCTAAAT
1 CCATAATCCCT-AAT
*
29733197 CCATACTCCCTAA
1 CCATAATCCCTAA
29733210 ACCTTAAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
14 12 0.50
15 12 0.50
ACGTcount: A:0.36, C:0.36, G:0.00, T:0.29
Consensus pattern (14 bp):
CCATAATCCCTAAT
Found at i:29733206 original size:15 final size:15
Alignment explanation
Indices: 29733164--29733210 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
29733154 TCCCAACCCT
29733164 TAAA-CCATAATCCC
1 TAAATCCATAATCCC
*
29733178 T-AATTCATAATCCC
1 TAAATCCATAATCCC
*
29733192 TAAATCCATACTCCC
1 TAAATCCATAATCCC
29733207 TAAA
1 TAAA
29733211 CCTTAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
13 2 0.07
14 11 0.39
15 15 0.54
ACGTcount: A:0.40, C:0.32, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAATCCATAATCCC
Found at i:29733400 original size:15 final size:15
Alignment explanation
Indices: 29733382--29733432 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
29733372 CCTAGCATGT
29733382 CTAACCCTTAAATCC
1 CTAACCCTTAAATCC
*
29733397 CTAACCCTCT-AACCC
1 CTAACCCT-TAAATCC
*
29733412 CTAAACCTTAAATCC
1 CTAACCCTTAAATCC
29733427 C-AACCC
1 CTAACCC
29733433 CTAATCCATA
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
14 5 0.17
15 24 0.80
16 1 0.03
ACGTcount: A:0.33, C:0.45, G:0.00, T:0.22
Consensus pattern (15 bp):
CTAACCCTTAAATCC
Found at i:29733988 original size:114 final size:113
Alignment explanation
Indices: 29733762--29734298 Score: 682
Period size: 114 Copynumber: 4.7 Consensus size: 113
29733752 AGCATTTTTG
** * *
29733762 GCCGCTAAATCCCTAAAAGCTCAAAAAACGGCGTCGTTGGGCTTAGAATTTTTTGCGGCGCTTTC
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAG-GTTTTTTGCGGCGCTTTC
* *
29733827 TCAAAAACACTGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
65 TCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
* * *
29733876 GCCGCTAAATCCCCAAAAGCTCAGAAAACGGCGTCGTTGGGCTCAGGTTTTTTGCGGCGCTTTCT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTCT
29733941 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAAC
66 CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTT-AAAAAC
* * * * * * *
29733990 GCCGCTAAATCCTCGAAAGCTAACAAAATGGTGTCGTTGGGTTTAGGATTTCTTGCGGCG-TTTT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGG-TTTTTTGCGGCGCTTTC
* * * * *
29734054 TGAGGAAGCGCCGCTAAATCCCTGAGCATTAGTGGCGCTTTAC-TAAAAAC
65 TCA-AAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTT-CTTAAAAAC
* *
29734104 GCCTCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAAGTTTTTTTGCGGCGCTTTT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTT-AGGTTTTTTGCGGCGC-TTT
* * **
29734169 ATCAAAAACGCCGCTAAAGCCCTGAGCATTAGTGGTTCTTTCTTAAAAAC
64 CTCAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
* * * **** *
29734219 GGCACTAAACCCCCGAAAGCTTGGGAAACGGTGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTCT
1 GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTCT
29734284 CAAAAACGCCGCTAA
66 CAAAAACGCCGCTAA
29734299 TGCTTATTTT
Statistics
Matches: 369, Mismatches: 46, Indels: 17
0.85 0.11 0.04
Matches are distributed among these distances:
113 77 0.21
114 164 0.44
115 122 0.33
116 6 0.02
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (113 bp):
GCCGCTAAATCCCCGAAAGCTCACAAAACGGCGTCGTTGGGCTTAGGTTTTTTGCGGCGCTTTCT
CAAAAACGCCGCTAAAGCCCTGAGCATTAGCGGCGCTTTCTTAAAAAC
Found at i:29755504 original size:19 final size:19
Alignment explanation
Indices: 29755465--29755504 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
29755455 AATAGGGATC
*
29755465 AATTTAAATAAAAATTTAA
1 AATTTAAATAAAAATTAAA
29755484 AATTTAAA-ATAAAATTAAA
1 AATTTAAATA-AAAATTAAA
29755503 AA
1 AA
29755505 CATGGGACAC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 1 0.05
19 18 0.95
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (19 bp):
AATTTAAATAAAAATTAAA
Found at i:29767773 original size:20 final size:20
Alignment explanation
Indices: 29767748--29767809 Score: 70
Period size: 20 Copynumber: 3.1 Consensus size: 20
29767738 TAAATGTGTT
29767748 CAGGGGCACATATGTGCAAA
1 CAGGGGCACATATGTGCAAA
* ** * *
29767768 CAGGGGTACCGAAGTACAAA
1 CAGGGGCACATATGTGCAAA
*
29767788 CAGGGGCACATATGTGGAAA
1 CAGGGGCACATATGTGCAAA
29767808 CA
1 CA
29767810 TGTAATAATT
Statistics
Matches: 31, Mismatches: 11, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.37, C:0.19, G:0.31, T:0.13
Consensus pattern (20 bp):
CAGGGGCACATATGTGCAAA
Found at i:29769697 original size:37 final size:37
Alignment explanation
Indices: 29769656--29769824 Score: 203
Period size: 37 Copynumber: 4.6 Consensus size: 37
29769646 CAAGTTACAC
* *** *
29769656 TCAGTATAACAGTAGGATTTGCTCGATTGAAAGTCCT
1 TCAGTATAACAGTAAGATTTGCTCGATTGAGCTTCAT
* *
29769693 TCAGTATAACAGTAACATTTGCTCGGTTGAGCTTCAT
1 TCAGTATAACAGTAAGATTTGCTCGATTGAGCTTCAT
* * * *
29769730 ACAGTATAATAGTAAGATTTTCTCGATTGAGCTTCTT
1 TCAGTATAACAGTAAGATTTGCTCGATTGAGCTTCAT
* * *
29769767 TCAGTATAACGGTACGATTTCCTCGATTGAGCTTCAT
1 TCAGTATAACAGTAAGATTTGCTCGATTGAGCTTCAT
*
29769804 TCAGTATAACGGTAAGATTTG
1 TCAGTATAACAGTAAGATTTG
29769825 GTTCGATATA
Statistics
Matches: 111, Mismatches: 21, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
37 111 1.00
ACGTcount: A:0.28, C:0.17, G:0.20, T:0.36
Consensus pattern (37 bp):
TCAGTATAACAGTAAGATTTGCTCGATTGAGCTTCAT
Found at i:29770503 original size:13 final size:13
Alignment explanation
Indices: 29770485--29770519 Score: 70
Period size: 13 Copynumber: 2.7 Consensus size: 13
29770475 TACACTTACC
29770485 AAATCAAAGATTT
1 AAATCAAAGATTT
29770498 AAATCAAAGATTT
1 AAATCAAAGATTT
29770511 AAATCAAAG
1 AAATCAAAG
29770520 TTAAAACCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 22 1.00
ACGTcount: A:0.57, C:0.09, G:0.09, T:0.26
Consensus pattern (13 bp):
AAATCAAAGATTT
Found at i:29772886 original size:50 final size:50
Alignment explanation
Indices: 29772828--29773119 Score: 340
Period size: 50 Copynumber: 5.9 Consensus size: 50
29772818 CATTTGGGTA
*
29772828 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* *
29772878 AAGAGGTCCCATGTAAGACCATGTCTGCGACATGGCCTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
*
29772928 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* * * * *
29772978 GAGAGGTCTCC-CGTAAGACCATGTCTGGGACATGGCATGGGCACCAATAT
1 AAGAGGTC-CCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * * * *
29773028 GAGAACTCCCATGTAAGACCATATCTGGGATATGGTATTGGCA--G-TAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
* ** * *
29773075 AGGAAACATCCCATGTAAGACCATGTCTAGGACATGGCCTTGGCA
1 A--AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
29773120 TGTTATTATT
Statistics
Matches: 211, Mismatches: 27, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
47 3 0.01
49 36 0.17
50 170 0.81
51 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGAT
Found at i:29774974 original size:22 final size:22
Alignment explanation
Indices: 29774949--29774993 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
29774939 AAAAAATATG
29774949 TTAAAAGAACAAAAATGAAAAA
1 TTAAAAGAACAAAAATGAAAAA
** * *
29774971 TTAAATTACCCAAAATGAAAAA
1 TTAAAAGAACAAAAATGAAAAA
29774993 T
1 T
29774994 ATAGGGTCCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.64, C:0.09, G:0.07, T:0.20
Consensus pattern (22 bp):
TTAAAAGAACAAAAATGAAAAA
Found at i:29776723 original size:21 final size:20
Alignment explanation
Indices: 29776683--29776725 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
29776673 TTATGTACCT
*
29776683 TTTATTCTTTATTTTTTTTA
1 TTTATTCTTTATTTTGTTTA
29776703 TTTAGTTCTTTCA-TTTGTTTA
1 TTTA-TTCTTT-ATTTTGTTTA
29776724 TT
1 TT
29776726 AATTTGTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 15 0.75
22 1 0.05
ACGTcount: A:0.14, C:0.07, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTATTCTTTATTTTGTTTA
Found at i:29776862 original size:15 final size:15
Alignment explanation
Indices: 29776842--29776876 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
29776832 TTTCTATGCC
29776842 ATTGTTATATTTATT
1 ATTGTTATATTTATT
*
29776857 ATTGTTGTATTTATT
1 ATTGTTATATTTATT
29776872 ATTGT
1 ATTGT
29776877 GGCATATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.23, C:0.00, G:0.11, T:0.66
Consensus pattern (15 bp):
ATTGTTATATTTATT
Found at i:29789132 original size:217 final size:217
Alignment explanation
Indices: 29788740--29789732 Score: 1563
Period size: 217 Copynumber: 4.6 Consensus size: 217
29788730 TCGGTGGCCA
*
29788740 ATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* * *
29788805 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTAAAGTTACAGTAGAGCAGACTAAGTAAGCA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* *
29788870 AGTCTTATCCTCCTGAAGTTGTAGTGAGGCAAACTGAAGATGGAAAATCTTATCTCCCTGAAGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGTT
* *
29788935 GCAGTAGAGCAGATCAAAGCCG
196 GCAGTGGAGCAGATTAAAGCCG
* * *
29788957 ATAATCATATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCCCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* * *
29789022 TACAGAGAGTAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGTAAGCA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* * *
29789087 AGTCTTATCCTCCTGAAGTTGCAATGAGGCAGACTAAATATGGAAAATCTTATCTCCCTGAAGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGTT
* *
29789152 GCAGTGGAGTAGATTAAAGCCA
196 GCAGTGGAGCAGATTAAAGCCG
*
29789174 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* * * * *
29789239 TACAGAAAGCAGATCGCATCTAGTCTAATCTCCCTAAAATTGCAGTGGAGCAGACTAAGTAAGCA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
* * *
29789304 AGTCTTATCCTCCTGAAGTTGCGGTGAGGCCGACTGAAGATGGTAAATCTTATCTCCCTGAAGTT
131 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGTT
29789369 GCAGTGGAGCAGATTAAAGCCG
196 GCAGTGGAGCAGATTAAAGCCG
* * *
29789391 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGAATAAAACCGTGGATCTTATCTCTCTATAAA
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTC--TGAA
* *
29789456 GTTGCAGAGAGTAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGTAAG
64 GTTGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG
* * * * *
29789521 CAAGTCTTATCCTCTTAAAGTTACAGTGAGGCAGACTGAAGATGGCAAATCTTATTTCCCTGAAG
129 CAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAG
* *
29789586 TTACAGTGGAACAGATTAAAGCCG
194 TTGCAGTGGAGCAGATTAAAGCCG
* * * *
29789610 ATAATCCTATCTCCCTGAAGTTGTAGTGTAGCGGATTAAAATCTTGGATCTTATCTCTATGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
*
29789675 TGCAGAGAGCAAATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
66 TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAA
29789733 CTCAAGCTGA
Statistics
Matches: 709, Mismatches: 65, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
217 515 0.73
219 194 0.27
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (217 bp):
ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
TGCAGAGAGCAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAGCA
AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGATGGAAAATCTTATCTCCCTGAAGTT
GCAGTGGAGCAGATTAAAGCCG
Found at i:29789446 original size:44 final size:44
Alignment explanation
Indices: 29788740--29789728 Score: 252
Period size: 44 Copynumber: 22.8 Consensus size: 44
29788730 TCGGTGGCCA
* * * *
29788740 ATAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAACC-
1 ATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAACCG
* * * * *** *
29788783 TTGGATCTTATCTCTCTGAAGTTGCAG-AGAGCAG-ATCGCATC-
1 AT-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAACCG
* * * * * *
29788825 -TAGTCTTATCTCCCTAAAGTTACAGTAGAGCAGACTAAGTAAGC-
1 ATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAA--AACCG
* * * **
29788869 A-AGTCTTATC-CTCCTGAAGTTGTAGT-GAGGCA-AACTGAAGATGG
1 ATAATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGAA-T-AAAACCG
* * *
29788913 AAAATCTTATCTCCCTGAAGTTGCAGTAGAGCAG-ATCAAAGCCG
1 ATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAAT-AAAACCG
* * * *
29788957 ATAATCATATCTTCCTGAAGTTGCAGTGGAGCGGATTAAAACC-
1 ATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAACCG
* * * * * *** *
29789000 TTGGATCTTATC-CCTCTGAAGTTACAG-AGAGTAG-ATCGCATC-
1 AT-AATCTTATCTCC-CTGAAGTTGCAGTGGAGCAGAATAAAACCG
* * * *
29789042 -TAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACTAAGTAAGC-
1 ATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAA--AACCG
* * * **
29789086 A-AGTCTTATC-CTCCTGAAGTTGCAAT-GAGGCAGACTAAATATGG
1 ATAATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGAATAAA-ACCG
* * * * *
29789130 AAAATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAGCCA
1 ATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAACCG
* * *
29789174 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC-
1 ATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAACCG
* * * ** *** *
29789217 TTAGATCTTATCTCTCTGAAGTTACAG-AAAGCAG-ATCGCATC-
1 ATA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAACCG
* * * * * *
29789259 -TAGTCTAATCTCCCTAAAATTGCAGTGGAGCAGACTAAGTAAGC-
1 ATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAA--AACCG
* * * * * *
29789303 A-AGTCTTATC-CTCCTGAAGTTGCGGT-GAGGCCGACTGAAGA-TG
1 ATAATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGAAT-AAAACCG
* * *
29789346 GTAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCG
1 AT-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAACCG
* *
29789391 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGAATAAAACCG
1 ATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAACCG
* * * * * *** *
29789435 -TGGATCTTATCTCTCTATAAAGTTGCAG-AGAGTAG-ATCGCATC-
1 AT-AATCTTATCTC-C-CTGAAGTTGCAGTGGAGCAGAATAAAACCG
* * * *
29789478 -TAGTCTTATCTCCCTGAAGTTGCAGTGGAACAGACTAAGTAAGC-
1 ATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAA--AACCG
* * * * * * **
29789522 A-AGTCTTATC-CTCTTAAAGTTACAGT-GAGGCAGACTGAAGATGG
1 ATAATCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGAAT-AAAACCG
* * * * *
29789566 CA-AATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAAAGCCG
1 -ATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAACCG
* * * * * *
29789610 ATAATCCTATCTCCCTGAAGTTGTAGTGTAGCGGATTAAAATC-
1 ATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAACCG
* * ** * *** *
29789653 TTGGATCTTATCTCTATGAAGTTGCAG-AGAGCA-AATCGCATC-
1 AT-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAACCG
*
29789695 -TAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
1 ATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
29789729 CTAACTCAAG
Statistics
Matches: 688, Mismatches: 193, Indels: 131
0.68 0.19 0.13
Matches are distributed among these distances:
40 84 0.12
41 35 0.05
42 29 0.04
43 42 0.06
44 357 0.52
45 119 0.17
46 22 0.03
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (44 bp):
ATAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGAATAAAACCG
Found at i:29791125 original size:30 final size:30
Alignment explanation
Indices: 29791057--29791137 Score: 78
Period size: 30 Copynumber: 2.8 Consensus size: 30
29791047 TAATTTAAAT
* *
29791057 TTTTTTTATATA-AT-TATTTTTATCTATA
1 TTTTTCTATATATATATATTTTTATCAATA
* * * *
29791085 TATGTGTATATATATATATTTTTATGAATA
1 TTTTTCTATATATATATATTTTTATCAATA
29791115 TTTTTCTATATATGA-ATATTTTT
1 TTTTTCTATATAT-ATATATTTTT
29791138 TTATATTTAT
Statistics
Matches: 42, Mismatches: 8, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
28 9 0.21
29 2 0.05
30 30 0.71
31 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.05, T:0.62
Consensus pattern (30 bp):
TTTTTCTATATATATATATTTTTATCAATA
Found at i:29791128 original size:18 final size:18
Alignment explanation
Indices: 29791107--29791143 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
29791097 TATATATTTT
29791107 TATGAATATTTTTCTATA
1 TATGAATATTTTTCTATA
*
29791125 TATGAATATTTTTTTATA
1 TATGAATATTTTTCTATA
29791143 T
1 T
29791144 TTATACGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.59
Consensus pattern (18 bp):
TATGAATATTTTTCTATA
Found at i:29791382 original size:21 final size:20
Alignment explanation
Indices: 29791342--29791384 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 20
29791332 TTAGGTACCT
*
29791342 TTTATTCTTTATTTTTTTTA
1 TTTATTCTTTATTTTGTTTA
29791362 TTTAGTTCTTTCA-TTTGTTTA
1 TTTA-TTCTTT-ATTTTGTTTA
29791383 TT
1 TT
29791385 AATTTGTGTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 4 0.20
21 15 0.75
22 1 0.05
ACGTcount: A:0.14, C:0.07, G:0.05, T:0.74
Consensus pattern (20 bp):
TTTATTCTTTATTTTGTTTA
Found at i:29791521 original size:15 final size:15
Alignment explanation
Indices: 29791501--29791535 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
29791491 TTTCTATGCC
29791501 ATTGTTGTATTTATT
1 ATTGTTGTATTTATT
29791516 ATTGTTGTATTTATT
1 ATTGTTGTATTTATT
29791531 ATTGT
1 ATTGT
29791536 AGCATACATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.14, T:0.66
Consensus pattern (15 bp):
ATTGTTGTATTTATT
Found at i:29793085 original size:36 final size:36
Alignment explanation
Indices: 29793036--29793106 Score: 90
Period size: 36 Copynumber: 2.0 Consensus size: 36
29793026 TGTTTTATTG
* * *
29793036 TTATGTTGTTATTATATTACTAC-TATTTTTTTGTTT
1 TTATGTTGATATTATATAACT-CTTATTTTATTGTTT
*
29793072 TTATTTTGATATTATATAACTCTTATTTTATTGTT
1 TTATGTTGATATTATATAACTCTTATTTTATTGTT
29793107 ATTTTTATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
35 1 0.03
36 29 0.97
ACGTcount: A:0.23, C:0.06, G:0.07, T:0.65
Consensus pattern (36 bp):
TTATGTTGATATTATATAACTCTTATTTTATTGTTT
Found at i:29793651 original size:12 final size:13
Alignment explanation
Indices: 29793632--29793664 Score: 59
Period size: 12 Copynumber: 2.6 Consensus size: 13
29793622 TAAACTCAAG
29793632 TCAAAAATAAAAA
1 TCAAAAATAAAAA
29793645 T-AAAAATAAAAA
1 TCAAAAATAAAAA
29793657 TCAAAAAT
1 TCAAAAAT
29793665 CAAACATTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 12 0.63
13 7 0.37
ACGTcount: A:0.76, C:0.06, G:0.00, T:0.18
Consensus pattern (13 bp):
TCAAAAATAAAAA
Found at i:29793668 original size:7 final size:6
Alignment explanation
Indices: 29793634--29793664 Score: 53
Period size: 6 Copynumber: 5.0 Consensus size: 6
29793624 AACTCAAGTC
29793634 AAAAAT AAAAAT AAAAAT AAAAAT CAAAAAT
1 AAAAAT AAAAAT AAAAAT AAAAAT -AAAAAT
29793665 CAAACATTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 18 0.75
7 6 0.25
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (6 bp):
AAAAAT
Found at i:29806477 original size:85 final size:82
Alignment explanation
Indices: 29806338--29806542 Score: 331
Period size: 85 Copynumber: 2.5 Consensus size: 82
29806328 GATATACGTC
*
29806338 TTTCAACAAATCATTTCAAAAAACAAA-AAAATATGTTATACTAACAAAATGATCCTATAGCAGT
1 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAACGATCCTATAGCAGT
29806402 AAGATGTTAACCAACCA
66 AAGATGTTAACCAACCA
* * *
29806419 TTTCAACAAATCATTTAAAAAAAAAAAAAACAAAATATGTTATGCTAACAAAACGATCCTATAGC
1 TTTCAACAAATCATTT---CAAAAAACAAACAAAATATGTTATACTAACAAAACGATCCTATAGC
*
29806484 AGTAAGATGTTAACCAATCA
63 AGTAAGATGTTAACCAACCA
29806504 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTA
1 TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTA
29806543 ACCATCTCAA
Statistics
Matches: 113, Mismatches: 7, Indels: 7
0.89 0.06 0.06
Matches are distributed among these distances:
81 16 0.14
82 21 0.19
84 9 0.08
85 67 0.59
ACGTcount: A:0.51, C:0.16, G:0.07, T:0.26
Consensus pattern (82 bp):
TTTCAACAAATCATTTCAAAAAACAAACAAAATATGTTATACTAACAAAACGATCCTATAGCAGT
AAGATGTTAACCAACCA
Found at i:29806911 original size:159 final size:155
Alignment explanation
Indices: 29806615--29807046 Score: 508
Period size: 159 Copynumber: 2.7 Consensus size: 155
29806605 CAATATGCCA
* * *
29806615 TCTTTTTTTGGCTTCTAGTTCTCATACTCGTACCAGACTGAGA-ATAAAAATCAAAACCCCAAAT
1 TCTTTTTTTGGCTTCTAGTTCTCGTACTCGTACCAGACTAAGACA-AAAAATCAGAA-CCCAAAT
* * ** * *
29806679 TAGATTTAAATAATTTGGAATTAACATTAAAAAAGTGTTTACGATATATTTGTGATCTAGTTGTG
64 TAGATTTAAATATTTTGGAATTGACATT-AAAAAGTGTTTACGATATACCTGTGATCCAGTTGTA
* *
29806744 TTAGGCTGAATG-CATGGTGTTCTGTTGT
128 TTAAGCTGAATGTCA-GGTGTTATGTTGT
* * *
29806772 TCTTTTTTTGGCTTCTAGTTCTTGTACTCATACCAGACTAAGACCAAAAACATTAGAACCCTAAA
1 TCTTTTTTTGGCTTCTAGTTCTCGTACTCGTACCAGACTAAGA-CAAAAA-ATCAGAACCC-AAA
* ** **
29806837 TTAGATTAAAATATTTTTTAATTGACATTAAAATAGTGCATACGATATACCTGTGATCCAGTTGT
63 TTAGATTTAAATATTTTGGAATTGACATTAAAA-AGTGTTTACGATATACCTGTGATCCAGTTGT
*
29806902 ATTAAGCTGAATGTGAGGTGTTATGTTGT
127 ATTAAGCTGAATGTCAGGTGTTATGTTGT
* * * * *
29806931 TATTTTTTGGGCTTTTAGTTCTCGTACTTGTACCAGACTAAAAGCAACAAAATCAGAACCCAAAT
1 TCTTTTTTTGGCTTCTAGTTCTCGTACTCGTACCAGACTAAGA-CAA-AAAATCAGAACCCAAAT
* *
29806996 TAGATTTTAATATTTTGGAATTGACAATTAAAAAGTGTTTACAATATACCT
64 TAGATTTAAATATTTTGGAATTGAC-ATTAAAAAGTGTTTACGATATACCT
29807047 ATGTTCCCAT
Statistics
Matches: 231, Mismatches: 36, Indels: 15
0.82 0.13 0.05
Matches are distributed among these distances:
157 39 0.17
158 51 0.22
159 137 0.59
160 4 0.02
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.38
Consensus pattern (155 bp):
TCTTTTTTTGGCTTCTAGTTCTCGTACTCGTACCAGACTAAGACAAAAAATCAGAACCCAAATTA
GATTTAAATATTTTGGAATTGACATTAAAAAGTGTTTACGATATACCTGTGATCCAGTTGTATTA
AGCTGAATGTCAGGTGTTATGTTGT
Found at i:29811633 original size:10 final size:9
Alignment explanation
Indices: 29811603--29811639 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
29811593 CTAGTTAGTG
29811603 TTTAACTTGT
1 TTTAA-TTGT
*
29811613 TTTAATTTT
1 TTTAATTGT
29811622 TTTAATTGT
1 TTTAATTGT
29811631 TTTAATTGT
1 TTTAATTGT
29811640 GGGTAAACCC
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
9 20 0.80
10 5 0.20
ACGTcount: A:0.22, C:0.03, G:0.08, T:0.68
Consensus pattern (9 bp):
TTTAATTGT
Found at i:29811688 original size:18 final size:18
Alignment explanation
Indices: 29811661--29811706 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
29811651 AAAAATTTTC
29811661 TAAA-TATTTTTTAAATT
1 TAAATTATTTTTTAAATT
* *
29811678 TTAATTATTTTTTAAGTT
1 TAAATTATTTTTTAAATT
29811696 TAAATTCATTT
1 TAAATT-ATTT
29811707 GCTGACGTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
17 3 0.12
18 17 0.71
19 4 0.17
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (18 bp):
TAAATTATTTTTTAAATT
Found at i:29818043 original size:5 final size:5
Alignment explanation
Indices: 29818033--29818062 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
29818023 TGTTTCAAGC
29818033 TTTAT TTTAT TTTAT TTTAT TTTACT TTTA
1 TTTAT TTTAT TTTAT TTTAT TTTA-T TTTA
29818063 ATTCATCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (5 bp):
TTTAT
Found at i:29818218 original size:20 final size:19
Alignment explanation
Indices: 29818193--29818231 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
29818183 CTCCTTTATT
29818193 TATATAAATAAATTAATAAA
1 TATATAAATAAA-TAATAAA
*
29818213 TATATAAATATATAATAAA
1 TATATAAATAAATAATAAA
29818232 AAAATTTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TATATAAATAAATAATAAA
Found at i:29827529 original size:40 final size:40
Alignment explanation
Indices: 29827492--29827677 Score: 227
Period size: 40 Copynumber: 4.7 Consensus size: 40
29827482 GCTACTCGTT
* *
29827492 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
29827532 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
29827572 CAAATGCCTTCGGG-CTTAACCCGGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
29827612 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
29827653 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
29827678 CATCATTCAA
Statistics
Matches: 131, Mismatches: 9, Indels: 12
0.86 0.06 0.08
Matches are distributed among these distances:
39 12 0.09
40 98 0.75
41 21 0.16
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:29835493 original size:40 final size:40
Alignment explanation
Indices: 29835456--29835641 Score: 250
Period size: 40 Copynumber: 4.7 Consensus size: 40
29835446 GCTACTCGTT
* *
29835456 CAAATGCCTTCGGGACATAGCCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
29835496 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
*
29835536 CAAATGCCTTCGGGACTTAACCCGAATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * * * *
29835576 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
29835617 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
29835642 CATCATTCAA
Statistics
Matches: 132, Mismatches: 11, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
39 3 0.02
40 118 0.89
41 11 0.08
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:29845842 original size:98 final size:97
Alignment explanation
Indices: 29845731--29845924 Score: 273
Period size: 98 Copynumber: 2.0 Consensus size: 97
29845721 TTAAAAAATA
* *
29845731 AAATATATTTAACATAATGATAAATATAAAA-AAATATTTTCATTATATAATTATATAATTATTA
1 AAATATATTTAACATAATGATAAATATAAAATAAATATTTT-ATTATATAATTACAT-ATAATTA
*
29845795 ATTTATTTATATAAATAAAGGAGTTATTAATTAG
64 ATTTATTTATATAAATAAAAGAGTTATTAATTAG
* * * * *
29845829 AAATATTTTTAACATAATGATATATTTAAAATAGATATTTTATTATATAATTACATATAATTATT
1 AAATATATTTAACATAATGATAAATATAAAATAAATATTTTATTATATAATTACATATAATTAAT
* *
29845894 TTATTTATATAAATAAAATATTTATTAATTA
66 TTATTTATATAAATAAAAGAGTTATTAATTA
29845925 AAAAGATGAA
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
97 35 0.41
98 42 0.49
99 8 0.09
ACGTcount: A:0.48, C:0.02, G:0.04, T:0.46
Consensus pattern (97 bp):
AAATATATTTAACATAATGATAAATATAAAATAAATATTTTATTATATAATTACATATAATTAAT
TTATTTATATAAATAAAAGAGTTATTAATTAG
Found at i:29845918 original size:26 final size:25
Alignment explanation
Indices: 29845855--29845919 Score: 69
Period size: 26 Copynumber: 2.5 Consensus size: 25
29845845 ATGATATATT
*
29845855 TAAAATAGA-TATTTTATTATATAAT
1 TAAAATA-ATTATTTTATTATATAAA
*
29845880 TACATATAATTATTTTATTTATATAAA
1 TA-AAATAATTATTTTA-TTATATAAA
*
29845907 TAAAATATTTATT
1 TAAAATAATTATT
29845920 AATTAAAAAG
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
25 3 0.09
26 20 0.61
27 10 0.30
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.51
Consensus pattern (25 bp):
TAAAATAATTATTTTATTATATAAA
Found at i:29845928 original size:17 final size:17
Alignment explanation
Indices: 29845895--29845927 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
29845885 ATAATTATTT
29845895 TATTTATATAAATAAAA
1 TATTTATATAAATAAAA
*
29845912 TATTTAT-TAATTAAAA
1 TATTTATATAAATAAAA
29845928 AGATGAATTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TATTTATATAAATAAAA
Found at i:29850655 original size:51 final size:50
Alignment explanation
Indices: 29850533--29850719 Score: 169
Period size: 51 Copynumber: 3.7 Consensus size: 50
29850523 TATTATCATT
** * * * *
29850533 CGATACACGTAGTAGCCTTAACATAGTACTACACATGTGATCAAACTTTT
1 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTAATCAAACTATC
* ** *
29850583 CGGTTTACGTAGTAGTCTGCACATAGTACTACACACGTAATCATTAA-TATC
1 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTAATCA--AACTATC
* * *
29850634 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTTTC
1 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTAATC-AAACTATC
* * *** *
29850685 CGGTGCGTATAGTAGCCTACACATAGTACTACACA
1 CGATACACGTAGTAGCCTGCACATAGTACTACACA
29850720 TGTGACCATC
Statistics
Matches: 110, Mismatches: 23, Indels: 7
0.79 0.16 0.05
Matches are distributed among these distances:
50 36 0.33
51 71 0.65
52 3 0.03
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (50 bp):
CGATACACGTAGTAGCCTGCACATAGTACTACACACGTAATCAAACTATC
Found at i:29850674 original size:101 final size:101
Alignment explanation
Indices: 29850533--29850719 Score: 261
Period size: 101 Copynumber: 1.8 Consensus size: 101
29850523 TATTATCATT
* * *
29850533 CGATACACGTAGTAGCCTTAACATAGTACTACACATGTGATC-AAACTTTTCGGTTTACG-TAGT
1 CGATACACGTAGTAGCCTGAACATAGTACTACACACGTGATCGAAACTTTCCGG--TACGATAGT
* *
29850596 AGTCTGCACATAGTACTACACACGTAATCATTAATATC
64 AGCCTACACATAGTACTACACACGTAATCATTAATATC
* * *
29850634 CGATACACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAGCTTTCCGGTGCGTATAGTA
1 CGATACACGTAGTAGCCTGAACATAGTACTACACACGTGATCGAAACTTTCCGGTACG-ATAGTA
29850699 GCCTACACATAGTACTACACA
65 GCCTACACATAGTACTACACA
29850720 TGTGACCATC
Statistics
Matches: 75, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
100 3 0.04
101 39 0.52
102 33 0.44
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (101 bp):
CGATACACGTAGTAGCCTGAACATAGTACTACACACGTGATCGAAACTTTCCGGTACGATAGTAG
CCTACACATAGTACTACACACGTAATCATTAATATC
Found at i:29853237 original size:26 final size:26
Alignment explanation
Indices: 29853207--29853261 Score: 76
Period size: 26 Copynumber: 2.1 Consensus size: 26
29853197 TTGCTTCTTG
*
29853207 GTTGTTAATCAG-TTATTTTGTGATTT
1 GTTGTTAA-CAGATTATTTCGTGATTT
*
29853233 GTTGTTAACCGATTATTTCGTGATTT
1 GTTGTTAACAGATTATTTCGTGATTT
29853259 GTT
1 GTT
29853262 CTTTGTTGTG
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.18, C:0.07, G:0.20, T:0.55
Consensus pattern (26 bp):
GTTGTTAACAGATTATTTCGTGATTT
Found at i:29855785 original size:72 final size:72
Alignment explanation
Indices: 29855668--29855810 Score: 241
Period size: 72 Copynumber: 2.0 Consensus size: 72
29855658 TCTTTTCAAA
* * **
29855668 CTCAAGTTTTAAACGATCTCGGGAATTAAGAAGAGATTGTGTCCTAACTTACTGGGTATGATCCA
1 CTCAAGTTTTAAACGATCTCGGGAATTAAGAAAAGACTGTGTCCTAACTTACTGGACATGATCCA
29855733 TTTTTTT
66 TTTTTTT
*
29855740 CTCAAGTTTTAAACGATCTCGGGAATTAAGAAAAGACTGTGTCCTAACTTACTGGACATGATCCC
1 CTCAAGTTTTAAACGATCTCGGGAATTAAGAAAAGACTGTGTCCTAACTTACTGGACATGATCCA
29855805 TTTTTT
66 TTTTTT
29855811 AAATCCGAGA
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (72 bp):
CTCAAGTTTTAAACGATCTCGGGAATTAAGAAAAGACTGTGTCCTAACTTACTGGACATGATCCA
TTTTTTT
Found at i:29859467 original size:31 final size:32
Alignment explanation
Indices: 29859406--29859468 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
29859396 AATTGAATGG
29859406 AGAGAAAATAAAATAATTGAAAACACTGAAATT
1 AGAGAAAATAAAATAATT-AAAACACTGAAATT
* * *
29859439 AGAGAAAATAAGATAGTT-AAACATTGAAAT
1 AGAGAAAATAAAATAATTAAAACACTGAAAT
29859469 GAAAATTACA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 11 0.41
33 16 0.59
ACGTcount: A:0.59, C:0.05, G:0.14, T:0.22
Consensus pattern (32 bp):
AGAGAAAATAAAATAATTAAAACACTGAAATT
Found at i:29860839 original size:17 final size:16
Alignment explanation
Indices: 29860817--29860850 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
29860807 TCCAATTACC
29860817 TATTAATTATCATATAT
1 TATTAATTAT-ATATAT
*
29860834 TATTAATTCTATATAT
1 TATTAATTATATATAT
29860850 T
1 T
29860851 TTCCTTGATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTAATTATATATAT
Found at i:29861521 original size:20 final size:20
Alignment explanation
Indices: 29861475--29861528 Score: 58
Period size: 20 Copynumber: 2.8 Consensus size: 20
29861465 GTTAAAAATT
*
29861475 AAATTTTGAT-AAAA-TTGTA
1 AAATTTT-ATAAAAATTTATA
*
29861494 AAAGTTTATAAAAATTTATA
1 AAATTTTATAAAAATTTATA
*
29861514 AAATTTTAAAAAAAT
1 AAATTTTATAAAAAT
29861529 AAAATATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 2 0.07
19 10 0.34
20 17 0.59
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.39
Consensus pattern (20 bp):
AAATTTTATAAAAATTTATA
Found at i:29861547 original size:26 final size:25
Alignment explanation
Indices: 29861504--29861556 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 25
29861494 AAAGTTTATA
29861504 AAAATTTATAAAATTTTAAAAAAAT
1 AAAATTTATAAAATTTTAAAAAAAT
*
29861529 AAAATATT-TAAAATGTTTAAAATAAT
1 AAAAT-TTATAAAAT-TTTAAAAAAAT
29861555 AA
1 AA
29861557 TTTTAATGAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.36
Consensus pattern (25 bp):
AAAATTTATAAAATTTTAAAAAAAT
Found at i:29865281 original size:13 final size:13
Alignment explanation
Indices: 29865263--29865287 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
29865253 AGCATTAGAT
29865263 AAAAAAGAAAAGA
1 AAAAAAGAAAAGA
29865276 AAAAAAGAAAAG
1 AAAAAAGAAAAG
29865288 CCCCACTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAAAAGAAAAGA
Found at i:29866137 original size:32 final size:32
Alignment explanation
Indices: 29866088--29866148 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
29866078 TTTGCCTCTT
* * *
29866088 CTATTTGCTACTACCTTCACGGATCATAACGA
1 CTATTTGCCACTACCTTCACCGACCATAACGA
*
29866120 CTATTTGCCACTGCCTTCACCGACCATAA
1 CTATTTGCCACTACCTTCACCGACCATAA
29866149 TTGCTGCTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.26, C:0.33, G:0.11, T:0.30
Consensus pattern (32 bp):
CTATTTGCCACTACCTTCACCGACCATAACGA
Found at i:29867827 original size:30 final size:29
Alignment explanation
Indices: 29867741--29867827 Score: 84
Period size: 30 Copynumber: 2.9 Consensus size: 29
29867731 TGTCAAAGCC
*
29867741 TCTTATACTTTTTACAGATTTGAAATTTAGT
1 TCTTATACTTTTT--AGATTTAAAATTTAGT
* ***
29867772 TCATATACTTTTTTTTTTTAGAAATTTAGT
1 TCTTATACTTTTTAGATTTA-AAATTTAGT
*
29867802 TCTTTTACTTTTTAGATTTCAAAATT
1 TCTTATACTTTTTAGATTT-AAAATT
29867828 CAAGTCCAAT
Statistics
Matches: 44, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
29 3 0.07
30 28 0.64
31 13 0.30
ACGTcount: A:0.28, C:0.09, G:0.07, T:0.56
Consensus pattern (29 bp):
TCTTATACTTTTTAGATTTAAAATTTAGT
Found at i:29868949 original size:7 final size:7
Alignment explanation
Indices: 29868937--29868991 Score: 51
Period size: 7 Copynumber: 8.1 Consensus size: 7
29868927 CTTGTACCTC
29868937 TTTTTCT
1 TTTTTCT
29868944 TTTTTC-
1 TTTTTCT
*
29868950 TTTTTCA
1 TTTTTCT
*
29868957 TTTTCCT
1 TTTTTCT
*
29868964 TTCTT-T
1 TTTTTCT
* *
29868970 TCTTTCC
1 TTTTTCT
29868977 TTTTTCT
1 TTTTTCT
29868984 TTTTTCT
1 TTTTTCT
29868991 T
1 T
29868992 ACCCATTCCC
Statistics
Matches: 37, Mismatches: 9, Indels: 4
0.74 0.18 0.08
Matches are distributed among these distances:
6 10 0.27
7 27 0.73
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTTTCT
Found at i:29869090 original size:27 final size:27
Alignment explanation
Indices: 29869052--29869108 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
29869042 AAAATATCAT
*
29869052 TGTCGTTCGTTGTCATTCACCATTCAC
1 TGTCATTCGTTGTCATTCACCATTCAC
*
29869079 TGTCATTCGTTGTCGTTCACCATTCAC
1 TGTCATTCGTTGTCATTCACCATTCAC
29869106 TGT
1 TGT
29869109 GTTTAGCAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.14, C:0.28, G:0.16, T:0.42
Consensus pattern (27 bp):
TGTCATTCGTTGTCATTCACCATTCAC
Found at i:29870029 original size:17 final size:18
Alignment explanation
Indices: 29870007--29870041 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
29869997 AACAATTAAA
29870007 TAAATT-GGAAATAAAAT
1 TAAATTGGGAAATAAAAT
29870024 TAAATTGGGAAATAAAAT
1 TAAATTGGGAAATAAAAT
29870042 CAGATTTTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.57, C:0.00, G:0.14, T:0.29
Consensus pattern (18 bp):
TAAATTGGGAAATAAAAT
Done.