Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold1548

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12822
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.32


Found at i:7131 original size:21 final size:21

Alignment explanation


    Indices: 7107--7148  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       7097 TCATCAGATC

                        *        
       7107 TACACCTTGAGGCATCGGGGG
          1 TACACCTTGAGGAATCGGGGG

                **               
       7128 TACAGGTTGAGGAATCGGGGG
          1 TACACCTTGAGGAATCGGGGG

       7149 AGGTAGAGGA


Statistics
Matches: 18,  Mismatches: 3, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19


Consensus pattern (21 bp):   
TACACCTTGAGGAATCGGGGG
Done.