Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold3209
Parameters: 2 7 7 80 10 50 1000
Length:  46053

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1457--1530
29
2.6
29
86
4
96
25
31
16
27
1.96
9517--9590
29
2.6
29
86
4
96
25
31
16
27
1.96
15067--15189
29
4.3
29
75
7
117
23
17
20
38
1.93
15109--15189
28
2.9
28
84
1
99
22
19
19
38
1.94
18357--18440
20
4.2
20
71
8
80
16
27
14
41
1.87
18374--18511
41
3.4
41
86
3
179
21
29
11
37
1.88
26945--27007
27
2.3
27
88
0
90
47
15
15
20
1.82
26945--27018
27
2.7
27
85
0
85
47
17
14
20
1.83
28031--28073
19
2.3
19
84
8
52
37
2
20
39
1.66
29779--29862
41
2.0
41
81
4
98
20
26
17
35
1.95
33017--33299
139
2.0
139
100
0
566
32
19
15
32
1.93
34728--34806
37
2.1
37
86
4
106
25
29
18
26
1.98
34925--35165
47
5.1
47
90
1
356
27
30
9
31
1.89
38408--38590
40
4.6
40
79
6
176
24
26
22
26
2.00
38395--38552
80
2.0
80
83
2
201
25
26
20
27
1.99
38409--38590
80
2.3
80
80
5
199
24
26
22
25
2.00
38903--38974
29
2.5
29
86
4
92
27
31
13
26
1.94
38956--39101
43
3.4
43
99
0
283
27
35
14
22
1.93
39283--39390
15
7.2
15
67
12
78
44
7
22
25
1.79
39277--39400
30
4.1
30
93
1
203
43
6
24
25
1.78
43956--44063
15
7.2
15
67
12
78
44
7
22
25
1.79
43950--44073
30
4.1
30
93
1
203
43
6
24
25
1.78

Tables:   1

The End!