Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold3113

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 755

Length: 1259
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37


Found at i:605 original size:29 final size:28

Alignment explanation


    Indices: 560--617  Score: 80
    Period size: 29  Copynumber: 2.0  Consensus size: 28

        550 GTCTTAACTC

                                        
        560 AAACTTTGCAAAATTACAATTTTGCCCT
          1 AAACTTTGCAAAATTACAATTTTGCCCT

                       * *     *         
        588 AAACTTTTGCATATTTACACTTTTGCCCT
          1 AAAC-TTTGCAAAATTACAATTTTGCCCT

             
        617 A
          1 A

        618 GGCTCAGGAA


Statistics
Matches: 26,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  28    4  0.15
  29   22  0.85

ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40


Consensus pattern (28 bp):   
AAACTTTGCAAAATTACAATTTTGCCCT
Done.