Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Scaffold2415
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 45847
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.30
Found at i:829 original size:27 final size:27
Alignment explanation
Indices: 792--996 Score: 252
Period size: 27 Copynumber: 7.6 Consensus size: 27
782 TAAATTGTAC
792 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
819 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
846 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
872 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
900 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
928 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
955 AGCACTAAGTGTGCGAGTTGA-TGATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
982 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
997 GACTCAATAT
Statistics
Matches: 155, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 131 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:8744 original size:27 final size:27
Alignment explanation
Indices: 8711--8915 Score: 252
Period size: 27 Copynumber: 7.6 Consensus size: 27
8701 TAAATTGTAC
8711 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
8738 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
8765 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
8791 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
8819 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
8847 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* *
8874 AGCACTAAGTGTGCGAGTTGA-TGATAT
1 AGCACTAAGTGTGCGATTTGACT-ATGT
*
8901 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
8916 GACTCAATAT
Statistics
Matches: 155, Mismatches: 19, Indels: 8
0.85 0.10 0.04
Matches are distributed among these distances:
26 1 0.01
27 131 0.85
28 23 0.15
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:13882 original size:22 final size:20
Alignment explanation
Indices: 13837--13882 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
13827 TCCAAATTAG
*
13837 CTAGTTGTTATTTAAGTTGT
1 CTAGTTGTTATTTAAATTGT
*
13857 CTAGTTGTTGTTTTAAATATGT
1 CTAGTTGTT-ATTTAAAT-TGT
13879 CTAG
1 CTAG
13883 ATGAATATCC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 9 0.41
21 6 0.27
22 7 0.32
ACGTcount: A:0.22, C:0.07, G:0.20, T:0.52
Consensus pattern (20 bp):
CTAGTTGTTATTTAAATTGT
Found at i:17457 original size:15 final size:15
Alignment explanation
Indices: 17437--17484 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
17427 TCAAAGATGG
17437 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
17452 GTTTATGTAGATG-G
1 GTTTATGGATATGAA
*
17466 GTTTATGGATATAAA
1 GTTTATGGATATGAA
17481 GTTT
1 GTTT
17485 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:17471 original size:14 final size:14
Alignment explanation
Indices: 17431--17474 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
17421 AAGGATTCAA
17431 AGATGGGTTTATGG
1 AGATGGGTTTATGG
* * *
17445 ATATGAAGTTTATGT
1 AGATG-GGTTTATGG
17460 AGATGGGTTTATGG
1 AGATGGGTTTATGG
17474 A
1 A
17475 TATAAAGTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.27, C:0.00, G:0.34, T:0.39
Consensus pattern (14 bp):
AGATGGGTTTATGG
Found at i:17500 original size:29 final size:29
Alignment explanation
Indices: 17431--17490 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
17421 AAGGATTCAA
*
17431 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
*
17460 AGATGGGTTTATGGATATAAAGTTTTTGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
17489 AG
1 AG
17491 GTTTGGTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.42
Consensus pattern (29 bp):
AGATGGGTTTATGGATATAAAGTTTATGT
Found at i:20422 original size:23 final size:22
Alignment explanation
Indices: 20371--20422 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
20361 CCTCGTCTTT
*
20371 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
20393 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
20416 TTCTTTT
1 TTCTTTT
20423 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:24004 original size:14 final size:14
Alignment explanation
Indices: 23962--24006 Score: 56
Period size: 14 Copynumber: 3.3 Consensus size: 14
23952 TTAAAGAAGC
23962 AACTCATTAAATTA
1 AACTCATTAAATTA
* *
23976 AATTCATCAAA-TA
1 AACTCATTAAATTA
*
23989 AACTCATTTAATTA
1 AACTCATTAAATTA
24003 AACT
1 AACT
24007 AAGATGAGTT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 10 0.40
14 15 0.60
ACGTcount: A:0.49, C:0.16, G:0.00, T:0.36
Consensus pattern (14 bp):
AACTCATTAAATTA
Found at i:26488 original size:24 final size:24
Alignment explanation
Indices: 26461--26531 Score: 79
Period size: 24 Copynumber: 3.0 Consensus size: 24
26451 TTCACATTCT
* *
26461 TTCTCTCTCTCAAACTCTTTTTCA
1 TTCTCTCTCTCAATCTCATTTTCA
* * *
26485 TTCTCTTTTTCAATCTCATTTTCT
1 TTCTCTCTCTCAATCTCATTTTCA
* *
26509 TTTTCACTCTCAATCTCATTTTC
1 TTCTCTCTCTCAATCTCATTTTC
26532 TTTTTCTTTC
Statistics
Matches: 38, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.15, C:0.30, G:0.00, T:0.55
Consensus pattern (24 bp):
TTCTCTCTCTCAATCTCATTTTCA
Found at i:26503 original size:18 final size:18
Alignment explanation
Indices: 26482--26531 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
26472 AAACTCTTTT
26482 TCATTCTCTTTTTCAATC
1 TCATTCTCTTTTTCAATC
* *
26500 TCATTTTCTTTTTCACTC
1 TCATTCTCTTTTTCAATC
* *
26518 TCAATCTCATTTTC
1 TCATTCTCTTTTTC
26532 TTTTTCTTTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.16, C:0.28, G:0.00, T:0.56
Consensus pattern (18 bp):
TCATTCTCTTTTTCAATC
Found at i:27849 original size:15 final size:15
Alignment explanation
Indices: 27829--27876 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
27819 TCAAAGATGG
27829 GTTTATGGATATGAA
1 GTTTATGGATATGAA
* * *
27844 GTTTATGTAGATG-G
1 GTTTATGGATATGAA
*
27858 GTTTATGGATATAAA
1 GTTTATGGATATGAA
27873 GTTT
1 GTTT
27877 TTGTAGGTTT
Statistics
Matches: 25, Mismatches: 7, Indels: 2
0.74 0.21 0.06
Matches are distributed among these distances:
14 10 0.40
15 15 0.60
ACGTcount: A:0.29, C:0.00, G:0.27, T:0.44
Consensus pattern (15 bp):
GTTTATGGATATGAA
Found at i:27863 original size:14 final size:14
Alignment explanation
Indices: 27823--27866 Score: 52
Period size: 14 Copynumber: 3.1 Consensus size: 14
27813 AAGGATTCAA
27823 AGATGGGTTTATGG
1 AGATGGGTTTATGG
* * *
27837 ATATGAAGTTTATGT
1 AGATG-GGTTTATGG
27852 AGATGGGTTTATGG
1 AGATGGGTTTATGG
27866 A
1 A
27867 TATAAAGTTT
Statistics
Matches: 23, Mismatches: 6, Indels: 2
0.74 0.19 0.06
Matches are distributed among these distances:
14 12 0.52
15 11 0.48
ACGTcount: A:0.27, C:0.00, G:0.34, T:0.39
Consensus pattern (14 bp):
AGATGGGTTTATGG
Found at i:27892 original size:29 final size:29
Alignment explanation
Indices: 27823--27882 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
27813 AAGGATTCAA
*
27823 AGATGGGTTTATGGATATGAAGTTTATGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
*
27852 AGATGGGTTTATGGATATAAAGTTTTTGT
1 AGATGGGTTTATGGATATAAAGTTTATGT
27881 AG
1 AG
27883 GTTTGGTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.00, G:0.30, T:0.42
Consensus pattern (29 bp):
AGATGGGTTTATGGATATAAAGTTTATGT
Found at i:29802 original size:39 final size:40
Alignment explanation
Indices: 29558--29820 Score: 273
Period size: 40 Copynumber: 6.6 Consensus size: 40
29548 TTGAATGCTG
* * * * * *
29558 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
29598 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATAC-AAGT
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAA-A
* * * *
29638 TCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
29678 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
29718 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
*
29758 TCCGGGTTAAGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
29797 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
29821 TGAACGAGGA
Statistics
Matches: 194, Mismatches: 24, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.18
40 149 0.77
41 10 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:29840 original size:79 final size:80
Alignment explanation
Indices: 29559--29855 Score: 221
Period size: 80 Copynumber: 3.7 Consensus size: 80
29549 TGAATGCTGT
* ** * * * **
29559 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * **
29622 TGTGCGAGATAC-AAGTT
64 CGTGCGAGTTACTAA-AA
* * * * **
29639 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
** *
29703 GTGCGAGTTGTTAAAT
65 GTGCGAGTTACTAAAA
* ** * *
29719 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
29783 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
29798 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
29856 TAGTGATTTG
Statistics
Matches: 182, Mismatches: 29, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
78 16 0.09
79 46 0.25
80 110 0.60
81 10 0.05
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:37274 original size:40 final size:39
Alignment explanation
Indices: 37171--37385 Score: 220
Period size: 39 Copynumber: 5.4 Consensus size: 39
37161 TATATCCGAC
* * *
37171 TAAGATCCGAAGGCATTTGTGCGAGATAC-AAGTTCCGGGT
1 TAAG-TCCGAAGGCATTCGTGCGAGTTACTAA-ATCCGGGT
* * * *
37211 TAAGCCCGCGAAGGCCTTTGTGCGAGATACTAAATTCCGGGT
1 TAAG-TC-CGAAGGCATTCGTGCGAGTTACTAAA-TCCGGGT
**
37253 TAAGTCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGT
1 TAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
*
37292 TAAGTCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGT
1 TAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
* * *
37331 TAAGTCCCGAAGGCATT-GTGTGAGTTACTAAAACC-GGC
1 TAAGT-CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
*
37369 TATGTCCCGAAGGCATT
1 TAAGT-CCGAAGGCATT
37386 TAACGAGGAG
Statistics
Matches: 155, Mismatches: 16, Indels: 10
0.86 0.09 0.06
Matches are distributed among these distances:
38 18 0.12
39 65 0.42
40 37 0.24
41 22 0.14
42 13 0.08
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (39 bp):
TAAGTCCGAAGGCATTCGTGCGAGTTACTAAATCCGGGT
Found at i:37347 original size:79 final size:80
Alignment explanation
Indices: 37204--37356 Score: 213
Period size: 79 Copynumber: 1.9 Consensus size: 80
37194 AGATACAAGT
* *
37204 TCCGGGTTAAGCCCGCGAAGGCCTTTGTGCGAGATACTAAATTCCGGGTTAAGTCCGAAGGCATT
1 TCCGGGTTAAGCCCGCGAAGGCATTCGTGCGAGATACTAAATTCCGGGTTAAGTCCGAAGGCATT
37269 CGTGCGAGTTGTTAAA
66 -GTGCGAGTTGTTAAA
* * *
37285 TCCGGGTTAAG-TC-CGAAGGCATTCGTGCGAGTTATTAAA-TCCGGGTTAAGTCCCGAAGGCAT
1 TCCGGGTTAAGCCCGCGAAGGCATTCGTGCGAGATACTAAATTCCGGGTTAAGT-CCGAAGGCAT
*
37347 TGTGTGAGTT
65 TGTGCGAGTT
37357 ACTAAAACCG
Statistics
Matches: 65, Mismatches: 6, Indels: 5
0.86 0.08 0.07
Matches are distributed among these distances:
78 20 0.31
79 33 0.51
80 1 0.02
81 11 0.17
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGCCCGCGAAGGCATTCGTGCGAGATACTAAATTCCGGGTTAAGTCCGAAGGCATT
GTGCGAGTTGTTAAA
Found at i:44703 original size:40 final size:41
Alignment explanation
Indices: 44646--44808 Score: 141
Period size: 40 Copynumber: 4.2 Consensus size: 41
44636 CGGACTAAGA
* *
44646 CGAAGGCATTT-GTGCGAGATAC-AAGTTCCGG-GTTAAGCC
1 CGAAGGCCTTTCGTGCGAGATACTAA-ATCCGGCGTTAAGCC
*
44685 CGAAGGCCTTTCGTGCGAGATACTAAATCCGGCGTTAAGTC
1 CGAAGGCCTTTCGTGCGAGATACTAAATCCGGCGTTAAGCC
* * *
44726 CG-AGG-CATTCGTGCGAG-T-TTTAAT-C-GCGTTAAGTCC
1 CGAAGGCCTTTCGTGCGAGATACTAAATCCGGCGTTAAG-CC
* * *
44762 CGAAGG-CATTCGTGCGAGTTATTAAATCCGG-GTTAAGTCC
1 CGAAGGCCTTTCGTGCGAGATACTAAATCCGGCGTTAAG-CC
44802 CGAAGGC
1 CGAAGGC
44809 ATTGTGTGAG
Statistics
Matches: 106, Mismatches: 8, Indels: 18
0.80 0.06 0.14
Matches are distributed among these distances:
35 8 0.08
36 4 0.04
37 19 0.18
38 2 0.02
39 26 0.25
40 35 0.33
41 12 0.11
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (41 bp):
CGAAGGCCTTTCGTGCGAGATACTAAATCCGGCGTTAAGCC
Found at i:44777 original size:76 final size:76
Alignment explanation
Indices: 44677--44820 Score: 204
Period size: 76 Copynumber: 1.9 Consensus size: 76
44667 CAAGTTCCGG
*
44677 GTTAAGCCCGAAGGCCTTTCGTGCGAGATACTAAATCCGGCGTTAAGT-CCG-AGGCATTCGTGC
1 GTTAAGCCCGAAGGCCATTCGTGCGAGATACTAAATCCGG-GTTAAGTCCCGAAGGCATT-GTGC
44740 GAGTTTTAATCGC
64 GAGTTTTAATCGC
* * *
44753 GTTAAGTCCCGAAGG-CATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTGTGTG
1 GTTAAG-CCCGAAGGCCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCG
44817 AGTT
65 AGTT
44821 ACTAAAACCG
Statistics
Matches: 61, Mismatches: 4, Indels: 6
0.86 0.06 0.08
Matches are distributed among these distances:
75 7 0.11
76 39 0.64
77 15 0.25
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (76 bp):
GTTAAGCCCGAAGGCCATTCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGA
GTTTTAATCGC
Found at i:44809 original size:40 final size:40
Alignment explanation
Indices: 44646--44850 Score: 219
Period size: 39 Copynumber: 5.2 Consensus size: 40
44636 CGGACTAAGA
* * *
44646 CGAAGGCATTTGTGCGAGATAC-AAGTTCCGGGTTAAG-CC
1 CGAAGGCATTCGTGCGAGTTACTAA-ATCCGGGTTAAGTCC
* *
44685 CGAAGGCCTTTCGTGCGAGATACTAAATCCGGCGTTAAGT-C
1 CGAAGG-CATTCGTGCGAGTTACTAAATCCGG-GTTAAGTCC
* *
44726 CG-AGGCATTCGTGCGAGTT--TTAAT-CGCGTTAAGTCC
1 CGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTCC
*
44762 CGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCC
1 CGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTCC
* * * *
44802 CGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCC
1 CGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTCC
44841 CGAAGGCATT
1 CGAAGGCATT
44851 TGAACGAGGA
Statistics
Matches: 143, Mismatches: 14, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
35 7 0.05
36 5 0.03
37 21 0.15
39 56 0.39
40 43 0.30
41 11 0.08
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTCC
Done.