genome.fa.s1674.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1127
Parameters: 2 7 7 80 10 50 1000
Length:  47541

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1312	638	2.0	641	96	1	2400	25	22	17	34	1.96
1192--1507	87	3.6	90	79	10	380	33	18	15	33	1.92
4065--4328	40	6.6	40	95	0	474	29	20	28	21	1.98
12853--13116	40	6.6	40	95	0	474	29	20	28	21	1.98
14825--15116	90	3.3	90	81	7	398	32	17	16	33	1.92
14991--17064	645	3.2	645	94	0	3686	26	22	17	33	1.96
16971--17241	87	3.0	89	80	9	354	34	18	15	31	1.92
16925--17227	90	3.4	90	80	7	393	32	19	15	32	1.93
16281--18706	821	3.0	820	96	0	4406	27	21	17	32	1.96
17751--18048	90	3.3	90	80	6	399	31	19	16	32	1.94
19212--19514	90	3.4	89	82	7	409	31	19	15	33	1.93
20087--20348	87	2.9	90	80	6	345	33	18	14	32	1.91
20044--20334	90	3.3	90	80	7	378	32	17	15	34	1.92
20853--21155	90	3.4	89	79	6	380	31	19	15	33	1.93
18579--21810	821	3.9	822	96	0	5792	27	21	17	33	1.96
22373--22634	87	2.9	89	81	8	345	33	19	14	32	1.92
22318--22620	90	3.4	90	81	7	402	32	19	15	33	1.93
23139--23441	90	3.4	89	81	7	400	32	19	15	33	1.93
24014--24275	87	2.9	89	80	8	336	33	18	14	32	1.92
23959--24248	90	3.3	90	81	6	401	32	19	15	32	1.93
21675--26757	821	6.2	820	95	0	8920	27	21	17	32	1.96
24822--25097	87	3.1	90	80	9	357	35	18	14	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24780--25082	90	3.4	90	81	7	393	32	19	14	32	1.93
25601--25903	90	3.4	90	81	7	402	31	19	16	32	1.94
26422--26722	90	3.4	90	78	8	369	32	17	15	34	1.92
26657--26983	75	4.3	75	83	4	399	32	20	16	30	1.94
26642--26975	151	2.2	150	84	6	431	33	18	16	31	1.93
27471--27772	90	3.4	90	78	8	384	32	19	16	32	1.94
26907--28626	820	2.1	820	95	0	3093	27	22	17	32	1.96
28292--28591	90	3.4	90	80	7	385	31	18	15	34	1.92
28526--28892	75	4.9	73	80	5	376	32	20	15	31	1.93
28554--28887	150	2.2	148	85	4	429	32	20	15	32	1.93
29669--29784	44	2.7	44	89	6	166	15	25	15	43	1.86
36952--36985	9	3.8	9	88	0	50	17	35	2	44	1.64
41615--41660	18	2.6	18	86	3	58	56	0	6	36	1.25
41666--41701	19	1.9	18	94	5	63	63	11	2	22	1.39
41671--41721	24	2.1	25	89	10	79	60	7	3	27	1.42
43559--43636	29	2.7	28	84	11	104	25	15	30	28	1.96
43589--43915	172	1.9	174	92	3	561	30	14	24	31	1.94

Tables:   1

The End!