Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Scaffold3298

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6056
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30


Found at i:1329 original size:29 final size:29

Alignment explanation


    Indices: 1294--1367  Score: 105
    Period size: 29  Copynumber: 2.6  Consensus size: 29

       1284 GTTGTGAGAT

                            *          *  
       1294 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
          1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA

                                *        
       1323 TGGCACTAAGTGTGCGAGTTTAAAGTACA
          1 TGGCACTAAGTGTGCGAGTTGAAAGTACA

                            
       1352 TGGCACTAAGTGTGCG
          1 TGGCACTAAGTGTGCG

       1368 TGGTTGATTA


Statistics
Matches: 41,  Mismatches: 3, Indels: 2
        0.89            0.07        0.04

Matches are distributed among these distances:
  28    5  0.12
  29   36  0.88

ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26


Consensus pattern (29 bp):   
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Done.