Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 106 of 173
Found at i:32808268 original size:23 final size:23
Alignment explanation
Indices: 32808220--32808269 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
32808210 ATTTTTAAAT
32808220 TTTA-AATTATTTAGTAATAATA
1 TTTAGAATTATTTAGTAATAATA
*
32808242 TTTAGAATTATTTAGTGATAATA
1 TTTAGAATTATTTAGTAATAATA
32808265 TTTAG
1 TTTAG
32808270 TGATAATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (23 bp):
TTTAGAATTATTTAGTAATAATA
Found at i:32808276 original size:36 final size:36
Alignment explanation
Indices: 32808227--32808304 Score: 138
Period size: 36 Copynumber: 2.2 Consensus size: 36
32808217 AATTTTAAAT
*
32808227 TATTTAGTAATAATATTTAGAATTATTTAGTGATAA
1 TATTTAGTAATAATATTTAGAATTATTTAATGATAA
*
32808263 TATTTAGTGATAATATTTAGAATTATTTAATGATAA
1 TATTTAGTAATAATATTTAGAATTATTTAATGATAA
32808299 TATTTA
1 TATTTA
32808305 AGAAAAATCT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (36 bp):
TATTTAGTAATAATATTTAGAATTATTTAATGATAA
Found at i:32811847 original size:20 final size:19
Alignment explanation
Indices: 32811822--32811860 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
32811812 TAACGGTTGA
32811822 TATCAAGAT-TTTGGCAAGAT
1 TATCAA-ATATTTGG-AAGAT
32811842 TATCAAATATTTGGAAGAT
1 TATCAAATATTTGGAAGAT
32811861 CCAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (19 bp):
TATCAAATATTTGGAAGAT
Found at i:32815956 original size:5 final size:5
Alignment explanation
Indices: 32815946--32816012 Score: 68
Period size: 5 Copynumber: 13.2 Consensus size: 5
32815936 AATTATGTTT
*
32815946 TTATA TTATA TTATTA TTA-A -TATA TTATA TTATA GTATA TTATA TTAT-
1 TTATA TTATA TTA-TA TTATA TTATA TTATA TTATA TTATA TTATA TTATA
32815994 TATATTA TTATA TATATA T
1 T-TA-TA TTATA T-TATA T
32816013 GACAAAGAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
3 2 0.04
4 3 0.06
5 34 0.64
6 13 0.25
7 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.58
Consensus pattern (5 bp):
TTATA
Found at i:32815984 original size:10 final size:9
Alignment explanation
Indices: 32815947--32816010 Score: 68
Period size: 8 Copynumber: 7.6 Consensus size: 9
32815937 ATTATGTTTT
32815947 TATATTATA
1 TATATTATA
32815956 T-TATTAT-
1 TATATTATA
32815963 TA-A-TATA
1 TATATTATA
32815970 TTATATTATA
1 -TATATTATA
32815980 GTATATTATA
1 -TATATTATA
32815990 T-TATTATA
1 TATATTATA
32815998 T-TATTATA
1 TATATTATA
32816006 TATAT
1 TATAT
32816011 ATGACAAAGA
Statistics
Matches: 48, Mismatches: 1, Indels: 12
0.79 0.02 0.20
Matches are distributed among these distances:
6 3 0.06
7 2 0.04
8 24 0.50
9 6 0.12
10 13 0.27
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.58
Consensus pattern (9 bp):
TATATTATA
Found at i:32816087 original size:45 final size:44
Alignment explanation
Indices: 32816021--32816125 Score: 140
Period size: 45 Copynumber: 2.3 Consensus size: 44
32816011 ATGACAAAGA
32816021 AAGAAAGAAAAGAAACAGAGAGCAAAACAAAACA-AAACAGAGAAGG
1 AAGAAAG-AAAGAAACAGAGAGCAAAACAAAACAGAAA-AG-GAAGG
* * *
32816067 GAGAAAGAAAGAAACAGAGAGCAAAACGAAACAGAGAAGGAAGG
1 AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAAAAGGAAGG
32816111 AAGGAAAGAAAGAAA
1 AA-GAAAGAAAGAAA
32816126 GAAAAGAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 5
0.85 0.06 0.08
Matches are distributed among these distances:
44 6 0.11
45 39 0.74
46 8 0.15
ACGTcount: A:0.65, C:0.09, G:0.27, T:0.00
Consensus pattern (44 bp):
AAGAAAGAAAGAAACAGAGAGCAAAACAAAACAGAAAAGGAAGG
Found at i:32816882 original size:29 final size:29
Alignment explanation
Indices: 32816829--32816887 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
32816819 TCCGAGCCTT
* *
32816829 GGGGCAAAAATGTAATTATGTAAAATTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTA
* *
32816858 GGGGCAAAATTGTAATTTTGAAAAAGTTA
1 GGGGCAAAAATGTAATTATGAAAAAGTTA
32816887 G
1 G
32816888 AGTCGAGGGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.42, C:0.03, G:0.24, T:0.31
Consensus pattern (29 bp):
GGGGCAAAAATGTAATTATGAAAAAGTTA
Found at i:32817115 original size:13 final size:13
Alignment explanation
Indices: 32817097--32817128 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
32817087 TTTCCAGCAA
32817097 TTATGAATTTATT
1 TTATGAATTTATT
32817110 TTATGAATTTATT
1 TTATGAATTTATT
*
32817123 TGATGA
1 TTATGA
32817129 TGATCCAAGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.31, C:0.00, G:0.12, T:0.56
Consensus pattern (13 bp):
TTATGAATTTATT
Found at i:32817368 original size:50 final size:50
Alignment explanation
Indices: 32817221--32817468 Score: 293
Period size: 50 Copynumber: 4.8 Consensus size: 50
32817211 ATTTGGGTAA
* *
32817221 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA-CC--GAGA-C--G
* *
32817277 AGAGG-CCCCTGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
* *
32817326 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
* * * *
32817376 AGAGGTCCCCTATAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
1 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGA-GACG
** *
32817426 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCA
1 AG-AGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCA
32817469 TGTTATTATC
Statistics
Matches: 169, Mismatches: 20, Indels: 11
0.85 0.10 0.05
Matches are distributed among these distances:
49 7 0.04
50 84 0.50
51 35 0.21
52 3 0.02
54 2 0.01
55 34 0.20
56 4 0.02
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (50 bp):
AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGACG
Found at i:32817427 original size:100 final size:102
Alignment explanation
Indices: 32817221--32817469 Score: 353
Period size: 100 Copynumber: 2.4 Consensus size: 102
32817211 ATTTGGGTAA
32817221 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCTTAAGATCATGAGAGGCCCC
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCC---AGATCATGAGAGGCCCC
* *
32817286 TGTAAGACCATGTCTGGGACATGGCATGGGCACCGAGACG
63 TATAAGACCATGTCTGGGACATGGCATGGGCACCGACACG
* * *
32817326 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCA-CC-GA-GATGAGAGGTCCCCTA
1 AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGG-CCCCTA
32817388 TAAGACCATGTCTGGGACATGGCATGGGCACC-ATCACG
65 TAAGACCATGTCTGGGACATGGCATGGGCACCGA-CACG
* *
32817426 AGAACATCCCATGTAAGACCATGTCTGGGACATGGCTTTGGCAT
1 AG-AGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCAT
32817470 GTTATTATCA
Statistics
Matches: 132, Mismatches: 8, Indels: 11
0.87 0.05 0.07
Matches are distributed among these distances:
99 9 0.07
100 44 0.33
101 37 0.28
104 2 0.02
105 40 0.30
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.20
Consensus pattern (102 bp):
AGAGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCCAGATCATGAGAGGCCCCTAT
AAGACCATGTCTGGGACATGGCATGGGCACCGACACG
Found at i:32820357 original size:19 final size:20
Alignment explanation
Indices: 32820333--32820372 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
32820323 AAAGGTTTTT
* *
32820333 AATGCATATG-ATGCAATGA
1 AATGCAAATGCATGAAATGA
32820352 AATGCAAATGCATGAAATGA
1 AATGCAAATGCATGAAATGA
32820372 A
1 A
32820373 TGCGAAAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.47, C:0.10, G:0.20, T:0.23
Consensus pattern (20 bp):
AATGCAAATGCATGAAATGA
Found at i:32822760 original size:18 final size:18
Alignment explanation
Indices: 32822737--32822786 Score: 55
Period size: 20 Copynumber: 2.7 Consensus size: 18
32822727 GTTAGAAAAA
*
32822737 ATTATAAAAAATATATAT
1 ATTATAAAAAATATAAAT
32822755 ATTATAAAATACATATAAAT
1 ATTATAAAA-A-ATATAAAT
* *
32822775 AATATAATAAAT
1 ATTATAAAAAAT
32822787 GATGCAACAA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
18 11 0.41
19 2 0.07
20 14 0.52
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (18 bp):
ATTATAAAAAATATAAAT
Found at i:32831694 original size:14 final size:15
Alignment explanation
Indices: 32831664--32831696 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
32831654 CCACGGATCA
*
32831664 AATCATTGGTGCCGG
1 AATCATTGGTACCGG
32831679 AATCATTGG-ACCGG
1 AATCATTGGTACCGG
32831693 AATC
1 AATC
32831697 TCAAACCAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (15 bp):
AATCATTGGTACCGG
Found at i:32834232 original size:19 final size:20
Alignment explanation
Indices: 32834186--32834241 Score: 71
Period size: 19 Copynumber: 2.9 Consensus size: 20
32834176 CCAGGGCTCG
32834186 TGGCACACGAAGTGCAT-AC
1 TGGCACACGAAGTGCATCAC
* *
32834205 TAGCGCACGAAGTGCATCA-
1 TGGCACACGAAGTGCATCAC
*
32834224 TGGCACACGAGGTGCATC
1 TGGCACACGAAGTGCATC
32834242 GTAGCGTATG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
19 30 0.97
20 1 0.03
ACGTcount: A:0.29, C:0.27, G:0.29, T:0.16
Consensus pattern (20 bp):
TGGCACACGAAGTGCATCAC
Found at i:32837624 original size:27 final size:28
Alignment explanation
Indices: 32837518--32837619 Score: 145
Period size: 27 Copynumber: 3.7 Consensus size: 28
32837508 AACCTGATCT
***
32837518 ACAGCTTGTGTGAGC-AGCCCAAATATC
1 ACAGCTTGTGTGAGCAAATTCAAATATC
32837545 ACAGCTTGTGTGAGCAAATTCAAATATC
1 ACAGCTTGTGTGAGCAAATTCAAATATC
*
32837573 -TAGCTTGTGTGAGCAAATTCAAATATC
1 ACAGCTTGTGTGAGCAAATTCAAATATC
*
32837600 ACAGCATGTGTGAGCAAATT
1 ACAGCTTGTGTGAGCAAATT
32837620 GAATAATTCT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 41 0.61
28 26 0.39
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (28 bp):
ACAGCTTGTGTGAGCAAATTCAAATATC
Found at i:32841663 original size:20 final size:21
Alignment explanation
Indices: 32841630--32841668 Score: 71
Period size: 20 Copynumber: 1.9 Consensus size: 21
32841620 AAGCGTGCTC
32841630 CCAATCGTCAAGACCAATCAT
1 CCAATCGTCAAGACCAATCAT
32841651 CCAATCG-CAAGACCAATC
1 CCAATCGTCAAGACCAATC
32841669 TTTTCCTCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.38, C:0.36, G:0.10, T:0.15
Consensus pattern (21 bp):
CCAATCGTCAAGACCAATCAT
Found at i:32845832 original size:16 final size:16
Alignment explanation
Indices: 32845813--32845845 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
32845803 GATAAATATA
*
32845813 TATTGTCATTGCATTT
1 TATTGTCATTACATTT
32845829 TATTGTCATTACATTT
1 TATTGTCATTACATTT
32845845 T
1 T
32845846 CATGTTAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.58
Consensus pattern (16 bp):
TATTGTCATTACATTT
Found at i:32848635 original size:31 final size:31
Alignment explanation
Indices: 32848590--32848649 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
32848580 TTTCAAGCAA
* * *
32848590 GCTCCTTATGCGAGCTTTCTGTGATAAGTAT
1 GCTCCCTATACGAGCTCTCTGTGATAAGTAT
32848621 GCTCCCTATACGAGCTCTCTGTGATAAGT
1 GCTCCCTATACGAGCTCTCTGTGATAAGT
32848650 CTCTGTGTGT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (31 bp):
GCTCCCTATACGAGCTCTCTGTGATAAGTAT
Found at i:32849051 original size:24 final size:25
Alignment explanation
Indices: 32848996--32849053 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 25
32848986 ATTTAAAATG
32848996 TAAATTATATTTAAAATAATAATAA
1 TAAATTATATTTAAAATAATAATAA
* *
32849021 TAAATTAT-TTT-TAATAATATTGAA
1 TAAATTATATTTAAAATAATAAT-AA
32849045 TAAATTATA
1 TAAATTATA
32849054 AAATAGAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 8 0.28
24 13 0.45
25 8 0.28
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (25 bp):
TAAATTATATTTAAAATAATAATAA
Found at i:32849826 original size:13 final size:13
Alignment explanation
Indices: 32849808--32849884 Score: 76
Period size: 13 Copynumber: 6.4 Consensus size: 13
32849798 AATTTTAAAT
32849808 TATTTAGTAATAA
1 TATTTAGTAATAA
32849821 TATTTAG-AAT--
1 TATTTAGTAATAA
*
32849831 TATTTAGTGATAA
1 TATTTAGTAATAA
*
32849844 TATTTAGTGATAA
1 TATTTAGTAATAA
32849857 TATTTAG-AAT--
1 TATTTAGTAATAA
* *
32849867 TATTTAATGATAA
1 TATTTAGTAATAA
32849880 TATTT
1 TATTT
32849885 TAACACTAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
10 13 0.24
11 4 0.07
12 5 0.09
13 32 0.59
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.49
Consensus pattern (13 bp):
TATTTAGTAATAA
Found at i:32849849 original size:23 final size:23
Alignment explanation
Indices: 32849801--32849850 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
32849791 ATTTTTAAAT
32849801 TTTA-AATTATTTAGTAATAATA
1 TTTAGAATTATTTAGTAATAATA
*
32849823 TTTAGAATTATTTAGTGATAATA
1 TTTAGAATTATTTAGTAATAATA
32849846 TTTAG
1 TTTAG
32849851 TGATAATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
22 4 0.15
23 22 0.85
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.50
Consensus pattern (23 bp):
TTTAGAATTATTTAGTAATAATA
Found at i:32849857 original size:36 final size:36
Alignment explanation
Indices: 32849808--32849884 Score: 136
Period size: 36 Copynumber: 2.1 Consensus size: 36
32849798 AATTTTAAAT
*
32849808 TATTTAGTAATAATATTTAGAATTATTTAGTGATAA
1 TATTTAGTAATAATATTTAGAATTATTTAATGATAA
*
32849844 TATTTAGTGATAATATTTAGAATTATTTAATGATAA
1 TATTTAGTAATAATATTTAGAATTATTTAATGATAA
32849880 TATTT
1 TATTT
32849885 TAACACTAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.40, C:0.00, G:0.10, T:0.49
Consensus pattern (36 bp):
TATTTAGTAATAATATTTAGAATTATTTAATGATAA
Found at i:32853398 original size:20 final size:19
Alignment explanation
Indices: 32853373--32853411 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 19
32853363 TAACGGTTGA
32853373 TATCAAGAT-TTTGGCAAGAT
1 TATCAA-ATATTTGG-AAGAT
32853393 TATCAAATATTTGGAAGAT
1 TATCAAATATTTGGAAGAT
32853412 CCAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.38, C:0.08, G:0.18, T:0.36
Consensus pattern (19 bp):
TATCAAATATTTGGAAGAT
Found at i:32858082 original size:146 final size:142
Alignment explanation
Indices: 32857834--32858120 Score: 425
Period size: 146 Copynumber: 2.0 Consensus size: 142
32857824 AAATTACTAC
32857834 TTTTCTTAAAAATCAAAATTTTATTTCAAAATAGTTGAAAAAAAATCAAAACATTGTTTTAAAAA
1 TTTTCTTAAAAATCAAAATTTTATTTCAAAATAGTTGAAAAAAAATCAAAACATTGTTTTAAAAA
32857899 ACTTAAACTTTTCCTTTAAAATGACTAAAAAACATATTTTTATTTTGAAAATCTAAACTTTCTCG
66 ACTTAAACTTTTCCTTTAAAATGACTAAAAAACATATTTTTATTTTGAAAATCTAAAC--TCTC-
32857964 TTTTAAAAAAAATAT
128 TTTTAAAAAAAATAT
* * ** *
32857979 TTTTCTTAAAGATCAAAGCTTTTATTTTGAAATAGTTGAAAAAAAATCAAAACTTTGTTTT-AAA
1 TTTTCTTAAAAATCAAA-ATTTTATTTCAAAATAGTTGAAAAAAAATCAAAACATTGTTTTAAAA
** * *
32858043 ATTTTAAAC-TTTCCTTTAAAATGACTAAAAAATATATATTTTTATTTTTAAAATCTAAACTCTC
65 AACTTAAACTTTTCCTTTAAAATGACT-AAAAA-ACATATTTTTATTTTGAAAATCTAAACTCTC
32858107 TTTTAAAAAAAATA
128 TTTTAAAAAAAATA
32858121 AAAAAGGGGA
Statistics
Matches: 130, Mismatches: 9, Indels: 8
0.88 0.06 0.05
Matches are distributed among these distances:
143 14 0.11
144 21 0.16
145 31 0.24
146 64 0.49
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.41
Consensus pattern (142 bp):
TTTTCTTAAAAATCAAAATTTTATTTCAAAATAGTTGAAAAAAAATCAAAACATTGTTTTAAAAA
ACTTAAACTTTTCCTTTAAAATGACTAAAAAACATATTTTTATTTTGAAAATCTAAACTCTCTTT
TAAAAAAAATAT
Found at i:32858937 original size:42 final size:42
Alignment explanation
Indices: 32858885--32859227 Score: 463
Period size: 42 Copynumber: 8.2 Consensus size: 42
32858875 ATATACAATA
* * *
32858885 CAATGAAAAGTAAATGGACCTCTACACCTAGGCCTTTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* *
32858927 CAATGAAAAGTAAATAGACCTCCACACTTGGGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * * * *
32858969 CAACGAAAAGTAAATAGACCTGCACACTTGAGTCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * * *
32859011 CGATGAAAAGTGAATGAACCTCCACACTTGGGCCTCTAAAT-
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* *
32859052 CTAATGAAAAGTGAATGGACCTCCACACCTGGGCTTCTAAATG
1 C-AATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
*
32859095 CAATGAAAAGTGAATGGACCTCCACACCTGGGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* *
32859137 CAATGAAAAGTGAATGGACCTCCACACCTGAGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
* * *
32859179 CAATAAAAAGTAAATGGACCTCCACACCCGAGCCTCTAAATG
1 CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
32859221 CAATGAA
1 CAATGAA
32859228 TGATTTGAGA
Statistics
Matches: 272, Mismatches: 27, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
41 1 0.00
42 270 0.99
43 1 0.00
ACGTcount: A:0.37, C:0.24, G:0.18, T:0.21
Consensus pattern (42 bp):
CAATGAAAAGTAAATGGACCTCCACACCTGGGCCTCTAAATG
Found at i:32864658 original size:12 final size:12
Alignment explanation
Indices: 32864641--32864668 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
32864631 GAATAAACAA
32864641 ATGAGCGAATGG
1 ATGAGCGAATGG
32864653 ATGAGCGAATGG
1 ATGAGCGAATGG
32864665 ATGA
1 ATGA
32864669 ATGAATGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.07, G:0.39, T:0.18
Consensus pattern (12 bp):
ATGAGCGAATGG
Found at i:32864674 original size:4 final size:4
Alignment explanation
Indices: 32864659--32864692 Score: 50
Period size: 4 Copynumber: 8.5 Consensus size: 4
32864649 ATGGATGAGC
* *
32864659 GAAT GGAT GAAT GAAT GAAT GAAT GAGT GAAT GA
1 GAAT GAAT GAAT GAAT GAAT GAAT GAAT GAAT GA
32864693 TTAAAATTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.44, C:0.00, G:0.32, T:0.24
Consensus pattern (4 bp):
GAAT
Found at i:32867951 original size:20 final size:19
Alignment explanation
Indices: 32867925--32867985 Score: 69
Period size: 20 Copynumber: 3.4 Consensus size: 19
32867915 TTTAGGTAAT
32867925 TAAATAATTAAATGATAAA
1 TAAATAATTAAATGATAAA
32867944 TGAAAT-A--AAAT-A-AAA
1 T-AAATAATTAAATGATAAA
32867959 TAAATAATTAAATGATAAA
1 TAAATAATTAAATGATAAA
32867978 TTAAATAA
1 -TAAATAA
32867986 AATAAAACAA
Statistics
Matches: 35, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
14 4 0.11
15 5 0.14
16 1 0.03
17 8 0.23
18 1 0.03
19 5 0.14
20 11 0.31
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.30
Consensus pattern (19 bp):
TAAATAATTAAATGATAAA
Found at i:32867965 original size:34 final size:34
Alignment explanation
Indices: 32867925--32867992 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
32867915 TTTAGGTAAT
32867925 TAAATAATTAAATGATAAATGAAATAAAATAAAA
1 TAAATAATTAAATGATAAATGAAATAAAATAAAA
*
32867959 TAAATAATTAAATGATAAATTAAATAAAATAAAA
1 TAAATAATTAAATGATAAATGAAATAAAATAAAA
32867993 CAAGCTTTCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (34 bp):
TAAATAATTAAATGATAAATGAAATAAAATAAAA
Found at i:32867979 original size:12 final size:11
Alignment explanation
Indices: 32867930--32867988 Score: 50
Period size: 12 Copynumber: 5.3 Consensus size: 11
32867920 GTAATTAAAT
32867930 AATTAAATGATA
1 AATTAAAT-ATA
*
32867942 AATGAAATA-A
1 AATTAAATATA
* *
32867952 AATAAAATAAA
1 AATTAAATATA
32867963 TAATTAAATGATA
1 -AATTAAAT-ATA
32867976 AATTAAATA-A
1 AATTAAATATA
32867986 AAT
1 AAT
32867989 AAAACAAGCT
Statistics
Matches: 40, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
10 13 0.32
11 3 0.08
12 22 0.55
13 2 0.05
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (11 bp):
AATTAAATATA
Found at i:32868983 original size:25 final size:24
Alignment explanation
Indices: 32868936--32869019 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 24
32868926 ACTACTCTTG
* *
32868936 TGAGCATACTGATTTATAGCTCGTGA
1 TGAGCATACCGA-TTACAGCTCGT-A
* *
32868962 -GAGCATACCGATCTACAACTCGAA
1 TGAGCATACCGAT-TACAGCTCGTA
32868986 TGAGCATACCGATTCACAGCTCGTA
1 TGAGCATACCGATT-ACAGCTCGTA
32869011 TGAGCATAC
1 TGAGCATAC
32869020 ATGTACCGGA
Statistics
Matches: 49, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
24 3 0.06
25 46 0.94
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (24 bp):
TGAGCATACCGATTACAGCTCGTA
Found at i:32872474 original size:156 final size:152
Alignment explanation
Indices: 32872165--32872470 Score: 408
Period size: 156 Copynumber: 2.0 Consensus size: 152
32872155 AATTTTCTTT
32872165 AAAAAAAATCACTACTTTTCTTAAAAATCAAAACTTTATTTCAAAATAGTTGAAAAAAAAATCAA
1 AAAAAAAATCACTACTTTTCTTAAAAATCAAAACTTTATTTCAAAATAGTTGAAAAAAAAATCAA
* * *
32872230 AACTTTGTTTTAAAAAATTTAAAATTTTCCTTTAAAATGACTAAAAAACAAATTTTTATTTTAAA
66 AACTTTGTCTT-AAAAATTTAAAACTTTCCTTT---ATGACTAAAAAACAAATTTTTATTTAAAA
32872295 AATCTAAACTTTCTCTTTTTTTTTAA
127 AATCTAAACTTTCTCTTTTTTTTTAA
* * **
32872321 AAAAAAAAT-ACTATTTTTCTTAAAGATCAAAACTTTTATTTTGAAATAGTTGAAAAAAAAATCA
1 AAAAAAAATCACTACTTTTCTTAAAAATCAAAAC-TTTATTTCAAAATAGTTGAAAAAAAAATCA
*
32872385 AAACTTTGTCTT-AAAATTTTAAACTTTCC-TT-T-ACTAAAAAACATAATTTTT-TTTAAAAAA
65 AAACTTTGTCTTAAAAATTTAAAACTTTCCTTTATGACTAAAAAACA-AATTTTTATTT--AAAA
32872445 AATCTAAACTTTCTCTTCTTCTTTTT
127 AATCTAAACTTTCTCTT-TT-TTTTT
32872471 TTTTTTAAAA
Statistics
Matches: 136, Mismatches: 8, Indels: 16
0.85 0.05 0.10
Matches are distributed among these distances:
148 14 0.10
149 8 0.06
150 20 0.15
151 2 0.01
152 5 0.04
153 2 0.01
154 15 0.11
155 22 0.16
156 48 0.35
ACGTcount: A:0.45, C:0.11, G:0.03, T:0.41
Consensus pattern (152 bp):
AAAAAAAATCACTACTTTTCTTAAAAATCAAAACTTTATTTCAAAATAGTTGAAAAAAAAATCAA
AACTTTGTCTTAAAAATTTAAAACTTTCCTTTATGACTAAAAAACAAATTTTTATTTAAAAAATC
TAAACTTTCTCTTTTTTTTTAA
Found at i:32875338 original size:24 final size:24
Alignment explanation
Indices: 32875311--32875362 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
32875301 TTAGTAAGTC
*
32875311 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
32875335 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
32875359 AAAT
1 AAAT
32875363 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:32878608 original size:27 final size:27
Alignment explanation
Indices: 32878570--32878624 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
32878560 TAGCCACATT
32878570 TTGGTGCCGCCTTTTTATTCCCCTCCA
1 TTGGTGCCGCCTTTTTATTCCCCTCCA
*
32878597 TTGGTGCTGCCTTTTTATTCCCCTCCA
1 TTGGTGCCGCCTTTTTATTCCCCTCCA
32878624 T
1 T
32878625 CAGCCTTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.07, C:0.35, G:0.15, T:0.44
Consensus pattern (27 bp):
TTGGTGCCGCCTTTTTATTCCCCTCCA
Found at i:32878633 original size:22 final size:24
Alignment explanation
Indices: 32878573--32878634 Score: 65
Period size: 27 Copynumber: 2.5 Consensus size: 24
32878563 CCACATTTTG
*
32878573 GTGCCGCCTTTTTATTCCCCTCCA
1 GTGCAGCCTTTTTATTCCCCTCCA
*
32878597 TTGGTGCTGCCTTTTTATTCCCCTCCA
1 ---GTGCAGCCTTTTTATTCCCCTCCA
32878624 -T-CAGCCTTTTT
1 GTGCAGCCTTTTT
32878635 TTTTCTATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
22 9 0.27
23 1 0.03
27 23 0.70
ACGTcount: A:0.08, C:0.35, G:0.13, T:0.44
Consensus pattern (24 bp):
GTGCAGCCTTTTTATTCCCCTCCA
Found at i:32879415 original size:40 final size:41
Alignment explanation
Indices: 32879338--32879418 Score: 105
Period size: 40 Copynumber: 2.0 Consensus size: 41
32879328 AAGTACCTTT
* *
32879338 TTTTTCTTTTTTTTCCTTCCTTCCCTTTTCTTCTTCTTTCC
1 TTTTTCTTTGTTTTCCTTCATTCCCTTTTCTTCTTCTTTCC
32879379 TTTTT-TTTGTTTTCCTTCATT-CC-TTTCTTTCTTTCTTTCC
1 TTTTTCTTTGTTTTCCTTCATTCCCTTTTC-TTC-TTCTTTCC
32879419 CTCTCCTTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
38 4 0.11
39 5 0.14
40 22 0.61
41 5 0.14
ACGTcount: A:0.01, C:0.28, G:0.01, T:0.69
Consensus pattern (41 bp):
TTTTTCTTTGTTTTCCTTCATTCCCTTTTCTTCTTCTTTCC
Found at i:32884753 original size:8 final size:8
Alignment explanation
Indices: 32884732--32884763 Score: 55
Period size: 8 Copynumber: 3.9 Consensus size: 8
32884722 AAATGGATAA
32884732 ATAAAAAT
1 ATAAAAAT
32884740 AGTAAAAAT
1 A-TAAAAAT
32884749 ATAAAAAT
1 ATAAAAAT
32884757 ATAAAAA
1 ATAAAAA
32884764 AAACAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 15 0.65
9 8 0.35
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (8 bp):
ATAAAAAT
Found at i:32884764 original size:17 final size:17
Alignment explanation
Indices: 32884732--32884763 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
32884722 AAATGGATAA
32884732 ATAAAAATAGTAAAAAT
1 ATAAAAATAGTAAAAAT
32884749 ATAAAAATA-TAAAAA
1 ATAAAAATAGTAAAAA
32884764 AAACAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.75, C:0.00, G:0.03, T:0.22
Consensus pattern (17 bp):
ATAAAAATAGTAAAAAT
Found at i:32886199 original size:44 final size:43
Alignment explanation
Indices: 32885980--32886412 Score: 168
Period size: 44 Copynumber: 9.9 Consensus size: 43
32885970 CGTCTTGTTG
* * * *
32885980 CTTCGATCCACTCCACTGCAACTTCAGAGAGATACGACTTGTA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTA
* ** * * *
32886023 GCTTCAATCTACTCCGCCACAACTTCAGGGGGACAAGATTTGTA
1 -CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTA
* * *
32886067 GTT---T-TA-TCCACTGTAACTTCAGGGAAATAAGATTCGTTGT-
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGA--C-TTGTA
* * * * * * * *
32886107 TTTCAGTATGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTGG
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGT-A
*
32886151 CTTCAATCTACTCCACTGCAACTTTAGGGAGATAAGACTTGTAA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGT-A
* * * * * **
32886195 CTTCAACCTATTCAATTGCAACATT-AAGGAGATAAGTTTTG-A
1 CTTCAATCTACTCCACTGCAAC-TTCAGGGAGATAAGACTTGTA
* * * *
32886237 -TAT-GATCTACTCTACTGCAACTTTAGGGAGATAAGATCCGTAATTTATA
1 CT-TCAATCTACTCCACTGCAACTTCAGGGAGATAAGA--C-----TTGTA
* ** * *
32886286 GCTTTAATCTGTTCCATTGCAACTTCAGGGAAATAAGA-TTCGCTA
1 -CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTT-G-TA
* * * ** * * *
32886331 TCTTCAGTCTGCTCCACTACAACTTCAAAGAGATAAGGCTGGTGG
1 -CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGT-A
* * *
32886376 CTTCAACCTGCTCCACTGCAACTTCAGGAAGATAAGA
1 CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGA
32886413 TCTGCCATAA
Statistics
Matches: 282, Mismatches: 79, Indels: 56
0.68 0.19 0.13
Matches are distributed among these distances:
38 19 0.07
39 2 0.01
40 5 0.02
41 28 0.10
42 5 0.02
43 6 0.02
44 130 0.46
45 55 0.20
46 1 0.00
48 2 0.01
49 1 0.00
50 1 0.00
51 27 0.10
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (43 bp):
CTTCAATCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTA
Found at i:32886444 original size:143 final size:143
Alignment explanation
Indices: 32886241--32887046 Score: 1071
Period size: 143 Copynumber: 5.6 Consensus size: 143
32886231 TTTTGATATG
* * * * * * *
32886241 ATCTACTCTACTGCAACTTTAGGGAGATAAGA--T-CCGTAATTTATAGCTTTAATCTGTTCCAT
1 ATCTGCTCCACTGCAACTTCAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCAC
* * * **
32886303 TGCAACT-TCAGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCACTACAACTTCAAAGAGATAA
66 TGCAA-TGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAA
32886367 GGCTGGTGGCTTCA
130 GGCTGGTGGCTTCA
* *
32886381 ACCTGCTCCACTGCAACTTCAGGAAGATAAGATCTGCCATAATTTGTAGATTTAATCTGTTCCAC
1 ATCTGCTCCACTGCAACTTCAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCAC
* * * *
32886446 TGCAACGCCAGAGAAATAAGATTCGTTGTCTTCAGTCTGCTTCGCTACAACTTCAGGGAGATAAG
66 TGCAATGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAG
* *
32886511 GATGGTGGATTCA
131 GCTGGTGGCTTCA
* * ** *
32886524 ATCTGCTCCATTACAACTTCAGGAAGATAAGATCTGTAATAATTTGTAGCTTTAATGTGTTCCAC
1 ATCTGCTCCACTGCAACTTCAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCAC
** * * * *
32886589 TGCAATGCCAGGGAAATAAGATTCATTTTCTTCAGTCTACTCTGCTACAACTTCAAGGAGATAAG
66 TGCAATGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAG
*
32886654 GCTAGTGGCTTCA
131 GCTGGTGGCTTCA
* * **
32886667 ATCTGCTCCACTTCAACTTCAGGAAGATAAGATCTACCATAATTTGTAATTTTAATCTGTTCCAC
1 ATCTGCTCCACTGCAACTTCAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCAC
* * * *
32886732 TGCAATGCCAGGGAAATAAGATTCGCTGTCTTTAGTTTGCTCCGCTGCAACTTCAGGGAAATAAG
66 TGCAATGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAG
32886797 GCTGGTGGCTTCA
131 GCTGGTGGCTTCA
* * * * *
32886810 ATTTGCTCCACTGCAACTTCAGGAAGATAAGATCCGCCATAATTTATAGGTTTAATCTATTCCAC
1 ATCTGCTCCACTGCAACTTCAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCAC
* * * * * *
32886875 TGCAACGCCAGGGAAAAATAAGATTCGTTGTCTTTAGTCTGCTCCGCTGCAATTTTAGGGAGATA
66 TGCAATGCCAGGG--AAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATA
32886940 AGGCTGGTGGCTTCA
129 AGGCTGGTGGCTTCA
* *
32886955 ATCTGCTCCACTGCAACTTCATGAAGATAAGATCTGCCAGAATTTGTAGCTTTAATCTGTTCCAC
1 ATCTGCTCCACTGCAACTTCAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCAC
*
32887020 TACAATGCCAGGGAAATAAGATTCGCT
66 TGCAATGCCAGGGAAATAAGATTCGCT
32887047 ATAATGACTT
Statistics
Matches: 579, Mismatches: 81, Indels: 9
0.87 0.12 0.01
Matches are distributed among these distances:
140 27 0.05
142 1 0.00
143 422 0.73
145 129 0.22
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (143 bp):
ATCTGCTCCACTGCAACTTCAGGAAGATAAGATCTGCCATAATTTGTAGCTTTAATCTGTTCCAC
TGCAATGCCAGGGAAATAAGATTCGCTGTCTTCAGTCTGCTCCGCTACAACTTCAGGGAGATAAG
GCTGGTGGCTTCA
Found at i:32886795 original size:45 final size:44
Alignment explanation
Indices: 32886727--32886842 Score: 119
Period size: 44 Copynumber: 2.6 Consensus size: 44
32886717 TTTAATCTGT
* * * *
32886727 TCCACTGCAA-TGCCAGGGAAATAAGATTCGCTGTCTTTAGTTTGC
1 TCCACTGCAACT-TCAGGGAAATAAGATT-GCTGGCTTCAATTTGC
* ** *
32886772 TCCGCTGCAACTTCAGGGAAATAAGGCTGGTGGCTTCAATTTGC
1 TCCACTGCAACTTCAGGGAAATAAGATTGCTGGCTTCAATTTGC
32886816 TCCACTGCAACTTCA-GGAAGATAAGAT
1 TCCACTGCAACTTCAGGGAA-ATAAGAT
32886843 CCGCCATAAT
Statistics
Matches: 58, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
43 4 0.07
44 31 0.53
45 22 0.38
46 1 0.02
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (44 bp):
TCCACTGCAACTTCAGGGAAATAAGATTGCTGGCTTCAATTTGC
Found at i:32887928 original size:17 final size:16
Alignment explanation
Indices: 32887906--32887958 Score: 70
Period size: 17 Copynumber: 3.1 Consensus size: 16
32887896 GGCCTCTCCC
32887906 TTTCTTTTTCTTTCTTT
1 TTTCTTTTTCTTT-TTT
32887923 TTTCTTTTATCTTTTTT
1 TTTCTTTT-TCTTTTTT
*
32887940 CTCTCTTTTTCTTTTTT
1 -TTTCTTTTTCTTTTTT
32887957 TT
1 TT
32887959 AAGTGAAGTA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
16 1 0.03
17 19 0.59
18 12 0.38
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTCTTTTTCTTTTTT
Found at i:32890541 original size:5 final size:5
Alignment explanation
Indices: 32890531--32890570 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
32890521 AATGCATTTG
32890531 ATGCA ATGCA ATGCTA ATGC- ATG-A ATGCA ATG-A ATGCA AT
1 ATGCA ATGCA ATGC-A ATGCA ATGCA ATGCA ATGCA ATGCA AT
32890571 AAATGCAAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
4 10 0.32
5 16 0.52
6 5 0.16
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (5 bp):
ATGCA
Found at i:32890565 original size:9 final size:9
Alignment explanation
Indices: 32890535--32890578 Score: 54
Period size: 9 Copynumber: 4.8 Consensus size: 9
32890525 CATTTGATGC
32890535 AATGCAATG
1 AATGCAATG
32890544 CTAATGC-ATG
1 --AATGCAATG
32890554 AATGCAATG
1 AATGCAATG
*
32890563 AATGCAATA
1 AATGCAATG
32890572 AATGCAA
1 AATGCAA
32890579 AAAAGAGGCG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
8 5 0.16
9 18 0.58
10 3 0.10
11 5 0.16
ACGTcount: A:0.45, C:0.14, G:0.18, T:0.23
Consensus pattern (9 bp):
AATGCAATG
Found at i:32892673 original size:9 final size:9
Alignment explanation
Indices: 32892651--32892695 Score: 51
Period size: 9 Copynumber: 5.2 Consensus size: 9
32892641 AAATGGATAA
32892651 ATAAAA-AT
1 ATAAAATAT
32892659 AGTAAAATAT
1 A-TAAAATAT
32892669 ATAAAATAT
1 ATAAAATAT
32892678 ATAAAA-AT
1 ATAAAATAT
*
32892686 -CAAAATAT
1 ATAAAATAT
32892694 AT
1 AT
32892696 TTAAGGAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
7 4 0.13
8 5 0.16
9 19 0.61
10 3 0.10
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (9 bp):
ATAAAATAT
Found at i:32930788 original size:23 final size:23
Alignment explanation
Indices: 32930747--32930791 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
32930737 TTTGTCATAC
32930747 TTATATATCACCATTTTCCTAGA
1 TTATATATCACCATTTTCCTAGA
32930770 TTATATATCACCATTTTCCTAG
1 TTATATATCACCATTTTCCTAG
32930792 TAAAATTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.04, T:0.44
Consensus pattern (23 bp):
TTATATATCACCATTTTCCTAGA
Found at i:32938143 original size:114 final size:114
Alignment explanation
Indices: 32938003--32938215 Score: 320
Period size: 114 Copynumber: 1.9 Consensus size: 114
32937993 AGAAAAAAAA
32938003 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAAAAAAATTAT-TTTTTTT
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTAC-AAAAAAAATTATATTTTTTT
32938067 CGTGTCAGAATCAGATATAAAAATACGAAAAAAAATTAAAAAAAAAATTT
65 CGTGTCAGAATCAGATATAAAAATACGAAAAAAAATTAAAAAAAAAATTT
* * * ***** *
32938117 TTTGGGTGCTGGCTTGTCAATGGCCGGCACCCAGTACAGAGTGCAAATTTTTTTTTATTTTTTTC
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAAAAAATTATATTTTTTTC
*
32938182 TTGTCAGAATCAGATATAAAAATACGAAAAAAAA
66 GTGTCAGAATCAGATATAAAAATACGAAAAAAAA
32938216 ATTTTGTACT
Statistics
Matches: 88, Mismatches: 10, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
113 6 0.07
114 82 0.93
ACGTcount: A:0.37, C:0.15, G:0.17, T:0.31
Consensus pattern (114 bp):
TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTACAAAAAAAATTATATTTTTTTC
GTGTCAGAATCAGATATAAAAATACGAAAAAAAATTAAAAAAAAAATTT
Found at i:32938413 original size:111 final size:112
Alignment explanation
Indices: 32938209--32938726 Score: 690
Period size: 111 Copynumber: 4.7 Consensus size: 112
32938199 AAAAATACGA
*
32938209 AAAAAAAATTTTGTACTGTGTACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAAATTTTTTT
1 AAAAAAAATTTTGTACTGTGTACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAAAATTTTTT
* *
32938274 TTTA-TTTTTTTCGTATTTTTATATCTGATTCTGACACCAAAAAAAT
66 TTAATTTTTTTTCGTATTTTTATATCTGATTCTGACACAAAAAAAAT
* *
32938320 -AAAAAAATTTTGTATTGTGTACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAAAAATTTTT
1 AAAAAAAATTTTGTACTGTGTACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAAAATTTTTT
*
32938384 TTAATTTTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAT
66 TTAATTTTTTTTCGTATTTTTATATCTGATTCTGACACAAAAAAAAT
*
32938431 AAAAGAAAAAGTTTTTTTGTACTGTGTACTGGGTGCC-AGCCATTGACAGGCCAGCATCCAAAAA
1 -AAA-AAAAA----TTTTGTACTGTGTACTGGGTGCCGA-CCATTGACAGGCCAGCACCCAAAAA
* ** *
32938495 A--------AA-ATTTCGT-AT-TTTT-ATATCTGATTCTGACACAAAAAAAAT
59 ATTTTTTTTAATTTTTTTTCGTATTTTTATATCTGATTCTGACACAAAAAAAAT
* * *
32938537 AAAAAAAAAATTTTGTACTGTGTATTGGGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTT
1 --AAAAAAAATTTTGTACTGTGTACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAAAATTTT
32938602 TTTTAATTTTTTTTCGTATTTTTATATCTGATTCTGACACAAAAAAAAT
64 TTTTAATTTTTTTTCGTATTTTTATATCTGATTCTGACACAAAAAAAAT
* *
32938651 -AAAAAAATTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGGTCAGCACCCAAAAAATTTTTT
1 AAAAAAAATTTTGTACTGTGTACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAAAA-TTTTT
32938715 TTTAATTTTTTT
65 TTTAATTTTTTT
32938727 CTTTTTCGTA
Statistics
Matches: 360, Mismatches: 23, Indels: 47
0.84 0.05 0.11
Matches are distributed among these distances:
102 46 0.13
106 30 0.08
107 8 0.02
108 1 0.00
109 4 0.01
110 68 0.19
111 100 0.28
112 18 0.05
113 6 0.02
114 31 0.09
117 1 0.00
118 47 0.13
ACGTcount: A:0.33, C:0.16, G:0.15, T:0.36
Consensus pattern (112 bp):
AAAAAAAATTTTGTACTGTGTACTGGGTGCCGACCATTGACAGGCCAGCACCCAAAAAATTTTTT
TTAATTTTTTTTCGTATTTTTATATCTGATTCTGACACAAAAAAAAT
Found at i:32938612 original size:220 final size:210
Alignment explanation
Indices: 32938282--32938708 Score: 674
Period size: 220 Copynumber: 2.0 Consensus size: 210
32938272 TTTTTATTTT
* *
32938282 TTTCGTATTTTTATATCTGATTCTGACACCAAAAAAATAAAAAAATTTTGTATTGTGTACTGGGT
1 TTTCGTATTTTTATATCTGATTCTGACACAAAAAAAATAAAAAAATTTTGTACTGTGTACTGGGT
32938347 GCCGACCATTGACAGGCCAGCACCCAAAAAAATTTTTTTAATTTTTTTTCGTATTTTTATATCTG
66 GCCGACCATTGACAGGCCAGCACCCAAAAAAATTTTTTTAATTTTTTTTCGTATTTTTATATCTG
32938412 ATTCTGACACGAAAAAAATAAAAGAAAAAGTTTTTTTGTACTGTGTACTGGGTGCCAGCCATTGA
131 ATTCTGACAC-AAAAAAA-AAAA-AAAAA----TTTTGTACTGTGTACTGGGTGCCAGCCATTGA
*
32938477 CAGGCCAGCATCCAAAAAAAAA
189 CAGGCCAGCACCCAAAAAAAAA
*
32938499 TTTCGTATTTTTATATCTGATTCTGACACAAAAAAAATAAAAAAAAAATTTTGTACTGTGTATTG
1 TTTCGTATTTTTATATCTGATTCTGACACAAAAAAAAT---AAAAAAATTTTGTACTGTGTACTG
* **
32938564 GGTGCCGGCCATTGACAGGCCAGCACCCAAAAATTTTTTTTTAATTTTTTTTCGTATTTTTATAT
63 GGTGCCGACCATTGACAGGCCAGCACCCAAAAAAATTTTTTTAATTTTTTTTCGTATTTTTATAT
* *
32938629 CTGATTCTGACACAAAAAAAATAAAAAAATTTTGTACTGTGTACTGGGTGCCGGCCATTGACAGG
128 CTGATTCTGACACAAAAAAAAAAAAAAAATTTTGTACTGTGTACTGGGTGCCAGCCATTGACAGG
*
32938694 TCAGCACCCAAAAAA
193 CCAGCACCCAAAAAA
32938709 TTTTTTTTTA
Statistics
Matches: 197, Mismatches: 10, Indels: 10
0.91 0.05 0.05
Matches are distributed among these distances:
213 48 0.24
217 42 0.21
218 3 0.02
219 7 0.04
220 97 0.49
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (210 bp):
TTTCGTATTTTTATATCTGATTCTGACACAAAAAAAATAAAAAAATTTTGTACTGTGTACTGGGT
GCCGACCATTGACAGGCCAGCACCCAAAAAAATTTTTTTAATTTTTTTTCGTATTTTTATATCTG
ATTCTGACACAAAAAAAAAAAAAAAATTTTGTACTGTGTACTGGGTGCCAGCCATTGACAGGCCA
GCACCCAAAAAAAAA
Found at i:32942017 original size:17 final size:17
Alignment explanation
Indices: 32941995--32942028 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
32941985 TATTAAAGTA
32941995 AAGTATAAGTCAAATGG
1 AAGTATAAGTCAAATGG
32942012 AAGTATAAGTCAAATGG
1 AAGTATAAGTCAAATGG
32942029 CGTATAAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.06, G:0.24, T:0.24
Consensus pattern (17 bp):
AAGTATAAGTCAAATGG
Found at i:32953865 original size:22 final size:22
Alignment explanation
Indices: 32953827--32953869 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
32953817 ACCACAATGC
32953827 AAACAATCCATCAAGCATCAACA
1 AAACAATCCATCAAGCA-CAACA
32953850 AAACAAT-CAT-ATAGCACAAC
1 AAACAATCCATCA-AGCACAAC
32953870 CTCAATAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
21 5 0.26
22 7 0.37
23 7 0.37
ACGTcount: A:0.53, C:0.28, G:0.05, T:0.14
Consensus pattern (22 bp):
AAACAATCCATCAAGCACAACA
Found at i:32953994 original size:39 final size:39
Alignment explanation
Indices: 32953951--32954130 Score: 245
Period size: 39 Copynumber: 4.6 Consensus size: 39
32953941 CATATTCACT
*
32953951 TTTAAGCATATATCACATTACAT-ATATAATCACATAACA
1 TTTAAGCATATATCACAATAC-TCATATAATCACATAACA
* *
32953990 TTTAAACATATATCACAATACTAATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
32954029 TTTAAGCGTATATCATAATACTCATATAATTACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* * *
32954068 CTCAAGCATGTATCACAATACTCATATAATCACATAACA
1 TTTAAGCATATATCACAATACTCATATAATCACATAACA
* *
32954107 TTCAAGCATATATCACAGTACTCA
1 TTTAAGCATATATCACAATACTCA
32954131 AAACCATGTT
Statistics
Matches: 124, Mismatches: 16, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
38 1 0.01
39 123 0.99
ACGTcount: A:0.45, C:0.20, G:0.04, T:0.31
Consensus pattern (39 bp):
TTTAAGCATATATCACAATACTCATATAATCACATAACA
Found at i:32962523 original size:22 final size:21
Alignment explanation
Indices: 32962491--32962531 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
32962481 ACATTTTGAC
*
32962491 TTTTTTTTCTCTTGTTTGGTT
1 TTTTTTTTCTCTTGGTTGGTT
32962512 TTTTCTTTTCTCTTGGTTGG
1 TTTT-TTTTCTCTTGGTTGG
32962532 AAAAACTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.00, C:0.12, G:0.17, T:0.71
Consensus pattern (21 bp):
TTTTTTTTCTCTTGGTTGGTT
Found at i:32964724 original size:20 final size:19
Alignment explanation
Indices: 32964695--32964792 Score: 56
Period size: 20 Copynumber: 5.0 Consensus size: 19
32964685 ATGGGACTTG
*
32964695 CACTTCGGTGCCCCTGTATA
1 CACTTTGGTGCCCCTGT-TA
* * * *
32964715 CACTTTGGTGTCTCTATTCG
1 CACTTTGGTGCCCCTGTT-A
* *
32964735 CACTATGGTGCCCCTGTTTG
1 CACTTTGGTGCCCCTG-TTA
32964755 CACATTT--TGCCCCTGTCTA
1 CAC-TTTGGTGCCCCTGT-TA
* *
32964774 CACCTTGGTGCCCTTGTTA
1 CACTTTGGTGCCCCTGTTA
32964793 TGCATCTATG
Statistics
Matches: 59, Mismatches: 13, Indels: 13
0.69 0.15 0.15
Matches are distributed among these distances:
18 3 0.05
19 15 0.25
20 37 0.63
21 4 0.07
ACGTcount: A:0.12, C:0.32, G:0.19, T:0.37
Consensus pattern (19 bp):
CACTTTGGTGCCCCTGTTA
Found at i:32967410 original size:27 final size:27
Alignment explanation
Indices: 32967377--32967598 Score: 261
Period size: 27 Copynumber: 8.3 Consensus size: 27
32967367 CCCTAAAATA
* *
32967377 GGTAAAATAACCAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
32967404 GATAAAATGACCGAAATA-CCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
** * *
32967430 GGTAAAATGATTGAAATACCCCCATAA
1 GGTAAAATGACCGAAATACCCCTATAG
* * *
32967457 GGTAAAATAATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
32967484 GGTAAAATGATCGAAATACCCCCATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
32967511 GGTAAAATGATCAAAATACCCCTATAG
1 GGTAAAATGACCGAAATACCCCTATAG
* *
32967538 GGTAGAATGACCAAAATACCCC-ATAG
1 GGTAAAATGACCGAAATACCCCTATAG
*
32967564 GGTAAAATAACCGAAATA-CCCTCATAG
1 GGTAAAATGACCGAAATACCCCT-ATAG
32967591 GGTAAAAT
1 GGTAAAAT
32967599 AAATGTTATA
Statistics
Matches: 173, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
25 3 0.02
26 42 0.24
27 128 0.74
ACGTcount: A:0.45, C:0.20, G:0.16, T:0.19
Consensus pattern (27 bp):
GGTAAAATGACCGAAATACCCCTATAG
Found at i:32967561 original size:80 final size:80
Alignment explanation
Indices: 32967376--32967598 Score: 304
Period size: 80 Copynumber: 2.8 Consensus size: 80
32967366 ACCCTAAAAT
* *
32967376 AGGTAAAATAACCAAAATACCCCTATAGGATAAAATGACCGAAATA-CCCTATAGGGTAAAATGA
1 AGGTAAAATAACCAAAATACCCC-ATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGA
**
32967440 TTGAAATACCCCCATA
65 TCAAAATACCCCCATA
* * *
32967456 AGGTAAAATAATCGAAATACCCCCATAGGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGA
1 AGGTAAAATAACCAAAATA-CCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGA
*
32967521 TCAAAATACCCCTATA
65 TCAAAATACCCCCATA
* * * * *
32967537 GGGTAGAATGACCAAAATACCCCATAGGGTAAAATAACCGAAATACCCTCATAGGGTAAAAT
1 AGGTAAAATAACCAAAATACCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAAT
32967599 AAATGTTATA
Statistics
Matches: 125, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
80 77 0.62
81 48 0.38
ACGTcount: A:0.45, C:0.20, G:0.16, T:0.19
Consensus pattern (80 bp):
AGGTAAAATAACCAAAATACCCCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATGAT
CAAAATACCCCCATA
Found at i:32971017 original size:6 final size:6
Alignment explanation
Indices: 32971006--32971083 Score: 156
Period size: 6 Copynumber: 13.0 Consensus size: 6
32970996 AAAGATAATC
32971006 ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT
1 ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT ACACAT
32971054 ACACAT ACACAT ACACAT ACACAT ACACAT
1 ACACAT ACACAT ACACAT ACACAT ACACAT
32971084 GGAAGTAAGA
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 72 1.00
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (6 bp):
ACACAT
Found at i:32981423 original size:20 final size:20
Alignment explanation
Indices: 32981400--32981450 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
32981390 CAGGGACACT
* *
32981400 GAAGTGTATATAGGGGCACC
1 GAAGTGTAAATAGGGGAACC
*
32981420 GAAGTCTAAATAGGGGAACC
1 GAAGTGTAAATAGGGGAACC
* *
32981440 AAAGTGCAAAT
1 GAAGTGTAAAT
32981451 CTCGTACAAA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.39, C:0.14, G:0.29, T:0.18
Consensus pattern (20 bp):
GAAGTGTAAATAGGGGAACC
Found at i:33005671 original size:50 final size:50
Alignment explanation
Indices: 33005578--33006075 Score: 681
Period size: 50 Copynumber: 9.8 Consensus size: 50
33005568 TTTCTTGTAC
* * * * * ** * *
33005578 TGCCAATGTCATATCGCAGATATGGTCTTACATGAGAATTCTCATATAGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* ** *
33005628 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
33005678 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGTACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
33005728 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
33005778 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
33005828 TGCCAATGCCATGCCCCAGAAATGGTCTTACATGGGACCTCTCATCTCAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
33005878 TGCCAATGCCATGTCCCAGACATTGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
33005928 TGCCAACGCCCTGTCCCAAACATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
33005978 TGCCAATACCATGTCCTAGACATGGTCTTACATGGGACCTCTCATAATCTCAACGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCT---CGG
*
33006034 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCTCT
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
33006076 TTACCCAAAT
Statistics
Matches: 399, Mismatches: 43, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
50 354 0.89
53 4 0.01
56 41 0.10
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:33008470 original size:16 final size:17
Alignment explanation
Indices: 33008442--33008475 Score: 61
Period size: 16 Copynumber: 2.1 Consensus size: 17
33008432 GATAATGAAT
33008442 TCAAAGAGATTTATAGC
1 TCAAAGAGATTTATAGC
33008459 TCAAAG-GATTTATAGC
1 TCAAAGAGATTTATAGC
33008475 T
1 T
33008476 TGGTTTTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.65
17 6 0.35
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (17 bp):
TCAAAGAGATTTATAGC
Found at i:33013744 original size:14 final size:14
Alignment explanation
Indices: 33013727--33013765 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
33013717 TTGGTCTAGT
*
33013727 TGAATTGAACCGAG
1 TGAACTGAACCGAG
*
33013741 TGAACTGAATCGAG
1 TGAACTGAACCGAG
*
33013755 TGAACCGAACC
1 TGAACTGAACC
33013766 AACCAAGAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.18
Consensus pattern (14 bp):
TGAACTGAACCGAG
Found at i:33021067 original size:30 final size:30
Alignment explanation
Indices: 33021031--33021089 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
33021021 AAATTATTTT
* * *
33021031 TAAAAATTTGGTGGCTCTTTTTGTAAATAC
1 TAAAAATTAGATGCCTCTTTTTGTAAATAC
33021061 TAAAAATTAGATGCCTCTTTTTGTAAATA
1 TAAAAATTAGATGCCTCTTTTTGTAAATA
33021090 TTTTCAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (30 bp):
TAAAAATTAGATGCCTCTTTTTGTAAATAC
Found at i:33025553 original size:17 final size:18
Alignment explanation
Indices: 33025527--33025565 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
33025517 GCAACTGTGG
33025527 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
33025543 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
33025561 AAAAT
1 AAAAT
33025566 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:33025742 original size:15 final size:15
Alignment explanation
Indices: 33025722--33025752 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
33025712 AAAACAATAT
33025722 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
33025737 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
33025752 A
1 A
33025753 CTTACATGAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.32, G:0.06, T:0.39
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:33029123 original size:15 final size:15
Alignment explanation
Indices: 33029113--33029142 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33029103 TCCCTTCTTG
33029113 ACCACGACCTTTTCC
1 ACCACGACCTTTTCC
*
33029128 ACCACGACCATTTCC
1 ACCACGACCTTTTCC
33029143 TCGATCTCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.47, G:0.07, T:0.23
Consensus pattern (15 bp):
ACCACGACCTTTTCC
Found at i:33029910 original size:17 final size:18
Alignment explanation
Indices: 33029884--33029922 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
33029874 CAAATTGTGG
33029884 AAAA-TGTTCTC-AATAT
1 AAAATTGTTCTCTAATAT
*
33029900 AAAATTGTTCTCTCATAT
1 AAAATTGTTCTCTAATAT
33029918 AAAAT
1 AAAAT
33029923 CAAAAGCTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 4 0.20
17 7 0.35
18 9 0.45
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.38
Consensus pattern (18 bp):
AAAATTGTTCTCTAATAT
Found at i:33030102 original size:15 final size:15
Alignment explanation
Indices: 33030079--33030109 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
33030069 AAAACAATAT
*
33030079 AACTTTTGACCTTTC
1 AACTCTTGACCTTTC
33030094 AACTCTTGACCTTTC
1 AACTCTTGACCTTTC
33030109 A
1 A
33030110 CTTACATGAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.42
Consensus pattern (15 bp):
AACTCTTGACCTTTC
Found at i:33042913 original size:43 final size:41
Alignment explanation
Indices: 33042866--33043286 Score: 202
Period size: 43 Copynumber: 9.9 Consensus size: 41
33042856 AACACATAAA
*
33042866 TGCATCATTGGATAAACCAACGCAATTATACTGGCACACACAG
1 TGCATCATCGGATAAACCAA-G-AATTATACTGGCACACACAG
* * * ** *
33042909 TGCATCATCAGATATACCGAAGTATCTATACCAGCACACACAA
1 TGCATCATCGGATAAACC-AAGAAT-TATACTGGCACACACAG
* * * *
33042952 TTCATCATCGGATATGA--AATATTTATACTGGCACACACAG
1 TGCATCATCGGATA-AACCAAGAATTATACTGGCACACACAG
* * * *
33042992 TGTATCATCGGATAAACCAAAGTATGTATACTAGCACATACAG
1 TGCATCATCGGATAAACC-AAGAAT-TATACTGGCACACACAG
* * *
33043035 TGCATCATCGGATAAACTAAAAAAATATACTGGC-CTACACAG
1 TGCATCATCGGATAAAC-CAAGAATTATACTGGCAC-ACACAG
* * * ** *
33043077 TGCATTATCGGATAAATCGAAGAAAATATACTACCACACATAG
1 TGCATCATCGGATAAA-CCAAG-AATTATACTGGCACACACAG
* * * * * ** *
33043120 TGCAAT-ACCAGATAAACTGAAGAAAATATATTGGCATGCATAG
1 TGC-ATCATCGGATAAAC-CAAG-AATTATACTGGCACACACAG
* * * ** *
33043163 CGCATCATCGGATAAACCAAAGAAAATATATTGGCATGCATAG
1 TGCATCATCGGATAAACC-AAG-AATTATACTGGCACACACAG
* * * *
33043206 TGCATCATCAGATAAACCGAAGAAAATATATTGGCACACATAG
1 TGCATCATCGGATAAACC-AAG-AATTATACTGGCACACACAG
* * * * * *
33043249 TTCATAATCAGACAAGCCTAAGCAATTATATTGGCACA
1 TGCATCATCGGATAAACC-AAG-AATTATACTGGCACA
33043287 TATAATGCAT
Statistics
Matches: 302, Mismatches: 60, Indels: 32
0.77 0.15 0.08
Matches are distributed among these distances:
39 1 0.00
40 26 0.09
41 4 0.01
42 38 0.13
43 227 0.75
44 6 0.02
ACGTcount: A:0.41, C:0.20, G:0.15, T:0.23
Consensus pattern (41 bp):
TGCATCATCGGATAAACCAAGAATTATACTGGCACACACAG
Found at i:33042990 original size:83 final size:83
Alignment explanation
Indices: 33042891--33043048 Score: 235
Period size: 83 Copynumber: 1.9 Consensus size: 83
33042881 ACCAACGCAA
* * *
33042891 TTATACTGGCACACACAGTGCATCATCAGATATACCGAAGTATCTATACCAGCACACACAATTCA
1 TTATACTGGCACACACAGTGCATCATCAGATAAACCAAAGTATCTATACCAGCACACACAATGCA
33042956 TCATCGGATATGAAATAT
66 TCATCGGATATGAAATAT
* * * * * *
33042974 TTATACTGGCACACACAGTGTATCATCGGATAAACCAAAGTATGTATACTAGCACATACAGTGCA
1 TTATACTGGCACACACAGTGCATCATCAGATAAACCAAAGTATCTATACCAGCACACACAATGCA
33043039 TCATCGGATA
66 TCATCGGATA
33043049 AACTAAAAAA
Statistics
Matches: 66, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
83 66 1.00
ACGTcount: A:0.37, C:0.23, G:0.15, T:0.25
Consensus pattern (83 bp):
TTATACTGGCACACACAGTGCATCATCAGATAAACCAAAGTATCTATACCAGCACACACAATGCA
TCATCGGATATGAAATAT
Found at i:33043186 original size:86 final size:86
Alignment explanation
Indices: 33042975--33043241 Score: 277
Period size: 86 Copynumber: 3.1 Consensus size: 86
33042965 ATGAAATATT
* * * * * ** * *
33042975 TATACTGGCACACACAGTGTATCATCGGATAAACCAAAGTATGTATACTAGCACATACAGTGCAT
1 TATATTGGCATACACAGCGCATCATCGGATAAACCAAAGAAAATATACTAGCACACATAGTGCAT
* *
33043040 CATCGGATAAACT-AAAAAAA
66 CATCAGATAAACTGAAGAAAA
* * * * * * *
33043060 TATACTGGCCTACACAGTGCATTATCGGATAAATCGAAGAAAATATACTACCACACATAGTGCAA
1 TATATTGGCATACACAGCGCATCATCGGATAAACCAAAGAAAATATACTAGCACACATAGTGC-A
*
33043125 T-ACCAGATAAACTGAAGAAAA
65 TCATCAGATAAACTGAAGAAAA
* * * * **
33043146 TATATTGGCATGCATAGCGCATCATCGGATAAACCAAAGAAAATATATTGGCATGCATAGTGCAT
1 TATATTGGCATACACAGCGCATCATCGGATAAACCAAAGAAAATATACTAGCACACATAGTGCAT
*
33043211 CATCAGATAAACCGAAGAAAA
66 CATCAGATAAACTGAAGAAAA
33043232 TATATTGGCA
1 TATATTGGCA
33043242 CACATAGTTC
Statistics
Matches: 149, Mismatches: 30, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
85 63 0.42
86 86 0.58
ACGTcount: A:0.42, C:0.19, G:0.16, T:0.22
Consensus pattern (86 bp):
TATATTGGCATACACAGCGCATCATCGGATAAACCAAAGAAAATATACTAGCACACATAGTGCAT
CATCAGATAAACTGAAGAAAA
Found at i:33043297 original size:129 final size:129
Alignment explanation
Indices: 33043025--33043313 Score: 305
Period size: 129 Copynumber: 2.2 Consensus size: 129
33043015 ATGTATACTA
* * * * *
33043025 GCACATACAGTGCATCATCGGATAAACTAAA-AAAATATACTGGCCTACACAGTGCATTATCGGA
1 GCACATATAGTGCATCATCGGATAAACCAAAGAAAATATACTGGCATACACAGTGCATCATCAGA
* *
33043089 TAAATCGAAGAAAATATACTACCACACATAGTGCAATACCAGATAAACTGAAGAAAATATATTG
66 TAAACCGAAGAAAATATACTACCACACATAGTGCAATACCAGACAAACTGAAGAAAATATATTG
*** * * * *
33043153 GCATGCATAGCGCATCATCGGATAAACCAAAGAAAATATATTGGCATGCATAGTGCATCATCAGA
1 GCACATATAGTGCATCATCGGATAAACCAAAGAAAATATACTGGCATACACAGTGCATCATCAGA
* ** * * * * *
33043218 TAAACCGAAGAAAATATATTGGCACACATAGTTC-ATAATCAGACAAGCCT-AAGCAATTATATT
66 TAAACCGAAGAAAATATACTACCACACATAGTGCAAT-ACCAGACAA-ACTGAAGAAAATATATT
33043281 G
129 G
* * * *
33043282 GCACATATAATGCATCATTGTATACACCAAAG
1 GCACATATAGTGCATCATCGGATAAACCAAAG
33043314 TATAACCTGT
Statistics
Matches: 128, Mismatches: 30, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
128 27 0.21
129 99 0.77
130 2 0.02
ACGTcount: A:0.43, C:0.19, G:0.16, T:0.23
Consensus pattern (129 bp):
GCACATATAGTGCATCATCGGATAAACCAAAGAAAATATACTGGCATACACAGTGCATCATCAGA
TAAACCGAAGAAAATATACTACCACACATAGTGCAATACCAGACAAACTGAAGAAAATATATTG
Found at i:33048477 original size:35 final size:37
Alignment explanation
Indices: 33048432--33048511 Score: 110
Period size: 38 Copynumber: 2.2 Consensus size: 37
33048422 GTACTGATAT
* *
33048432 GGGCTAAGGCCCAA-ACT-ATTACTGATACTGAAAAA
1 GGGCTTAGGCCCAAGACTCATTAATGATACTGAAAAA
*
33048467 GGGCTTAGGCCCAAGACTGCTTTAATGATACTGAAAAA
1 GGGCTTAGGCCCAAGACT-CATTAATGATACTGAAAAA
33048505 GGGCTTA
1 GGGCTTA
33048512 TGTTGCATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
35 13 0.33
36 3 0.08
38 23 0.59
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.23
Consensus pattern (37 bp):
GGGCTTAGGCCCAAGACTCATTAATGATACTGAAAAA
Found at i:33052653 original size:37 final size:37
Alignment explanation
Indices: 33052612--33052797 Score: 171
Period size: 37 Copynumber: 5.0 Consensus size: 37
33052602 CACCAAATAT
* * * *
33052612 TGCTCCAAGGAGTAATATCTATTGATTTTACTGAATG
1 TGCTCCAAAGAGCAATATCTACTGATTATACTGAATG
* * *
33052649 TGCT-CAAACAAGCAATATCTACTGGTTATATTGAATG
1 TGCTCCAAA-GAGCAATATCTACTGATTATACTGAATG
*
33052686 TGCTCCAAAGAGCAATGTCTACTGATTATACTGAATG
1 TGCTCCAAAGAGCAATATCTACTGATTATACTGAATG
* * *
33052723 TGCT-CAAACGAGCAATAACCACTGATCATACTGAATG
1 TGCTCCAAA-GAGCAATATCTACTGATTATACTGAATG
* * * *
33052760 TTTGCT-CAAACGAGCATTATCCACTGATCATATTGAAT
1 --TGCTCCAAA-GAGCAATATCTACTGATTATACTGAAT
33052798 AAGATCTTCT
Statistics
Matches: 126, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
36 7 0.06
37 82 0.65
38 4 0.03
39 33 0.26
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (37 bp):
TGCTCCAAAGAGCAATATCTACTGATTATACTGAATG
Found at i:33052758 original size:74 final size:74
Alignment explanation
Indices: 33052612--33052797 Score: 203
Period size: 74 Copynumber: 2.5 Consensus size: 74
33052602 CACCAAATAT
* * * * * * * *
33052612 TGCTCCAAGGAGTAATATCTATTGATTTTACTGAATGTGCTCAAACAAGCAATATCTACTGGTTA
1 TGCTCCAAAGAGCAATATCTACTGATTATACTGAATGTGCTCAAACAAGCAATAACCACTGATCA
*
33052677 TATTGAATG
66 TACTGAATG
* *
33052686 TGCTCCAAAGAGCAATGTCTACTGATTATACTGAATGTGCTCAAACGAGCAATAACCACTGATCA
1 TGCTCCAAAGAGCAATATCTACTGATTATACTGAATGTGCTCAAACAAGCAATAACCACTGATCA
33052751 TACTGAATG
66 TACTGAATG
* * * *
33052760 TTTGCT-CAAACGAGCATTATCCACTGATCATATTGAAT
1 --TGCTCCAAA-GAGCAATATCTACTGATTATACTGAAT
33052798 AAGATCTTCT
Statistics
Matches: 93, Mismatches: 16, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
74 63 0.68
75 4 0.04
76 26 0.28
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31
Consensus pattern (74 bp):
TGCTCCAAAGAGCAATATCTACTGATTATACTGAATGTGCTCAAACAAGCAATAACCACTGATCA
TACTGAATG
Found at i:33052784 original size:39 final size:37
Alignment explanation
Indices: 33052640--33052797 Score: 183
Period size: 37 Copynumber: 4.2 Consensus size: 37
33052630 CTATTGATTT
* * * *
33052640 TACTGAATGTGCTCAAACAAGCAATATCTACTGGTTA
1 TACTGAATGTGCTCAAACGAGCAATATCCACTGATCA
* * * *
33052677 TATTGAATGTGCTCCAAA-GAGCAATGTCTACTGATTA
1 TACTGAATGTGCT-CAAACGAGCAATATCCACTGATCA
*
33052714 TACTGAATGTGCTCAAACGAGCAATAACCACTGATCA
1 TACTGAATGTGCTCAAACGAGCAATATCCACTGATCA
*
33052751 TACTGAATGTTTGCTCAAACGAGCATTATCCACTGATCA
1 TACTGAATG--TGCTCAAACGAGCAATATCCACTGATCA
*
33052790 TATTGAAT
1 TACTGAAT
33052798 AAGATCTTCT
Statistics
Matches: 105, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
36 4 0.04
37 64 0.61
38 4 0.04
39 33 0.31
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (37 bp):
TACTGAATGTGCTCAAACGAGCAATATCCACTGATCA
Found at i:33054269 original size:39 final size:39
Alignment explanation
Indices: 33054214--33054463 Score: 324
Period size: 39 Copynumber: 6.4 Consensus size: 39
33054204 AGTAGATAAT
* * *
33054214 TGTTGTACTTCGGTACCCCTGATTGCAGTTATGTGCCCC
1 TGTTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCC
* * * *
33054253 TGTTGTACTTCAGTACCCCTAATCGTACTTACGTACCCC
1 TGTTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCC
* *
33054292 TGTTGTACTTCGGTACCTCTGA-CAGGACTTACGTGCCCC
1 TGTTGTACTTCGGTACCCCTGATC-GCACTTACGTGCCCC
* *
33054331 TGTTGTACTTTGGTACCCCTGATCGCACTTACGTGCCAC
1 TGTTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCC
* *
33054370 TGTTGTACTTCGGTTCCCTTGATCGCACTTACGTGCCCC
1 TGTTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCC
* * *
33054409 TATTGTACTTCGGTACCCCTGA-CACCACTTATGTGCCCC
1 TGTTGTACTTCGGTACCCCTGATC-GCACTTACGTGCCCC
33054448 TGTTGTACTTCGGTAC
1 TGTTGTACTTCGGTAC
33054464 TCTTGATAAC
Statistics
Matches: 182, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
38 2 0.01
39 179 0.98
40 1 0.01
ACGTcount: A:0.15, C:0.31, G:0.20, T:0.34
Consensus pattern (39 bp):
TGTTGTACTTCGGTACCCCTGATCGCACTTACGTGCCCC
Found at i:33055855 original size:15 final size:15
Alignment explanation
Indices: 33055831--33055860 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
33055821 TAATACTCCG
33055831 TAGCCCAAATTCGGC
1 TAGCCCAAATTCGGC
*
33055846 TAGCCTAAATTCGGC
1 TAGCCCAAATTCGGC
33055861 AACGGATACG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.30, G:0.20, T:0.23
Consensus pattern (15 bp):
TAGCCCAAATTCGGC
Found at i:33066084 original size:27 final size:27
Alignment explanation
Indices: 33066046--33066125 Score: 88
Period size: 27 Copynumber: 3.0 Consensus size: 27
33066036 TCTATACTCT
*
33066046 CATGTTTAACGTTCCGTCAAACTATCC
1 CATGTTTAACGTCCCGTCAAACTATCC
* *
33066073 CATGTTTAACGTCCCGTCGAACTATCT
1 CATGTTTAACGTCCCGTCAAACTATCC
** * * *
33066100 TGTGTTTAACATCCTGTCAGACTATC
1 CATGTTTAACGTCCCGTCAAACTATC
33066126 TACGATGTCA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.24, C:0.28, G:0.14, T:0.35
Consensus pattern (27 bp):
CATGTTTAACGTCCCGTCAAACTATCC
Found at i:33066419 original size:45 final size:45
Alignment explanation
Indices: 33066368--33066453 Score: 154
Period size: 45 Copynumber: 1.9 Consensus size: 45
33066358 ACTTGTTTAC
*
33066368 CATGATGCCATAGCGTCTTTTAGCAATGGTCTTACTCATTTCCAT
1 CATGATGCCATAGCATCTTTTAGCAATGGTCTTACTCATTTCCAT
*
33066413 CATGATGCCATAGCATCTTTTAGCTATGGTCTTACTCATTT
1 CATGATGCCATAGCATCTTTTAGCAATGGTCTTACTCATTT
33066454 TAGGCGTATA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (45 bp):
CATGATGCCATAGCATCTTTTAGCAATGGTCTTACTCATTTCCAT
Found at i:33070279 original size:61 final size:58
Alignment explanation
Indices: 33070170--33070281 Score: 161
Period size: 61 Copynumber: 1.9 Consensus size: 58
33070160 ACTTTAATAA
** * *
33070170 TAAATTAATATTATATTTATTAAGATAAATATTAGATTAAATTTAATATTAGATCTAT
1 TAAATTAATAGAATATTTATTAAGATAAATATTAAATTAAATTAAATATTAGATCTAT
33070228 TAAATTAATAGAATATTTATCTACAAGATAAATATTAAATTAAATTAAATATTA
1 TAAATTAATAGAATATTTAT-T--AAGATAAATATTAAATTAAATTAAATATTA
33070282 AGATAATCAC
Statistics
Matches: 47, Mismatches: 4, Indels: 3
0.87 0.07 0.06
Matches are distributed among these distances:
58 18 0.38
59 1 0.02
61 28 0.60
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.43
Consensus pattern (58 bp):
TAAATTAATAGAATATTTATTAAGATAAATATTAAATTAAATTAAATATTAGATCTAT
Found at i:33070308 original size:20 final size:18
Alignment explanation
Indices: 33070256--33070309 Score: 67
Period size: 20 Copynumber: 2.9 Consensus size: 18
33070246 ATCTACAAGA
33070256 TAAATATTAAATTAA-AT
1 TAAATATTAAATTAATAT
33070273 TAAATATTAAGA-TAATCACT
1 TAAATATTAA-ATTAAT-A-T
33070293 TAAATATTAAATTAATA
1 TAAATATTAAATTAATA
33070310 AAATGCTATC
Statistics
Matches: 32, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
17 13 0.41
18 1 0.03
19 3 0.09
20 15 0.47
ACGTcount: A:0.56, C:0.04, G:0.02, T:0.39
Consensus pattern (18 bp):
TAAATATTAAATTAATAT
Found at i:33076363 original size:15 final size:15
Alignment explanation
Indices: 33076343--33076397 Score: 53
Period size: 15 Copynumber: 3.9 Consensus size: 15
33076333 TGTTTGATAA
33076343 ACTGAAAAATTAAGT
1 ACTGAAAAATTAAGT
*
33076358 ACTGAAAAAATAAGT
1 ACTGAAAAATTAAGT
** *
33076373 GTTG--GAA-TAAGT
1 ACTGAAAAATTAAGT
33076385 ACTGAAAAATTAA
1 ACTGAAAAATTAA
33076398 ATGTTGAATT
Statistics
Matches: 30, Mismatches: 7, Indels: 6
0.70 0.16 0.14
Matches are distributed among these distances:
12 7 0.23
13 2 0.07
14 2 0.07
15 19 0.63
ACGTcount: A:0.53, C:0.05, G:0.16, T:0.25
Consensus pattern (15 bp):
ACTGAAAAATTAAGT
Found at i:33076886 original size:5 final size:5
Alignment explanation
Indices: 33076876--33076906 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
33076866 TGAGCATTCG
33076876 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
33076907 AATTTTCGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:33077562 original size:17 final size:17
Alignment explanation
Indices: 33077524--33077567 Score: 54
Period size: 19 Copynumber: 2.5 Consensus size: 17
33077514 GGGTGAGAAG
33077524 TAAAAGTTTAGGGGAAAA
1 TAAAAGTTTAGGGG-AAA
*
33077542 TAAAAAGTTTTGGGG-AA
1 T-AAAAGTTTAGGGGAAA
33077559 TAAAAGTTT
1 TAAAAGTTT
33077568 GAGGAAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 8 0.33
17 3 0.12
18 1 0.04
19 12 0.50
ACGTcount: A:0.45, C:0.00, G:0.25, T:0.30
Consensus pattern (17 bp):
TAAAAGTTTAGGGGAAA
Found at i:33077947 original size:9 final size:9
Alignment explanation
Indices: 33077933--33077969 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
33077923 TATAGTTTAA
33077933 TATTCGAAT
1 TATTCGAAT
33077942 TATTCGAAT
1 TATTCGAAT
*
33077951 TATTCGAGT
1 TATTCGAAT
33077960 TATTCGAAT
1 TATTCGAAT
33077969 T
1 T
33077970 TGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:33078022 original size:24 final size:24
Alignment explanation
Indices: 33077961--33078015 Score: 110
Period size: 24 Copynumber: 2.3 Consensus size: 24
33077951 TATTCGAGTT
33077961 ATTCGAATTTGAAAACTCAACTCG
1 ATTCGAATTTGAAAACTCAACTCG
33077985 ATTCGAATTTGAAAACTCAACTCG
1 ATTCGAATTTGAAAACTCAACTCG
33078009 ATTCGAA
1 ATTCGAA
33078016 CTCGAAATTC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.38, C:0.20, G:0.13, T:0.29
Consensus pattern (24 bp):
ATTCGAATTTGAAAACTCAACTCG
Found at i:33081316 original size:15 final size:15
Alignment explanation
Indices: 33081296--33081349 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 15
33081286 ATACTACAAA
33081296 ATATTTATTATTAAT
1 ATATTTATTATTAAT
*
33081311 ATATTTATAATTGTAAT
1 ATATTTATTA-T-TAAT
*
33081328 AAATATTTATTATTAAA
1 --ATATTTATTATTAAT
33081345 ATATT
1 ATATT
33081350 AATATTGAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
15 14 0.44
16 1 0.03
17 7 0.22
18 1 0.03
19 9 0.28
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (15 bp):
ATATTTATTATTAAT
Found at i:33102627 original size:28 final size:27
Alignment explanation
Indices: 33102592--33102691 Score: 128
Period size: 28 Copynumber: 3.6 Consensus size: 27
33102582 TTTAATAAGT
* * *
33102592 TCGCACACTTAGTGCTGAATAATCAAAC
1 TCGCACACTTAGTGCT-TACAATTAAAC
* *
33102620 TCACACACTTAGTGCTTTACCATTAAAC
1 TCGCACACTTAGTGC-TTACAATTAAAC
33102648 TCGCACACTTAGTGCCTTACAATTAAAC
1 TCGCACACTTAGTG-CTTACAATTAAAC
33102676 TCGCACACTTAGTGCT
1 TCGCACACTTAGTGCT
33102692 AATCTCATTA
Statistics
Matches: 63, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
27 2 0.03
28 59 0.94
29 2 0.03
ACGTcount: A:0.31, C:0.28, G:0.12, T:0.29
Consensus pattern (27 bp):
TCGCACACTTAGTGCTTACAATTAAAC
Found at i:33109166 original size:8 final size:8
Alignment explanation
Indices: 33109153--33109201 Score: 55
Period size: 8 Copynumber: 6.2 Consensus size: 8
33109143 TAAATATAAT
33109153 ATAATATA
1 ATAATATA
33109161 ATAATATA
1 ATAATATA
33109169 ATAATA-A
1 ATAATATA
*
33109176 ATAATTTA
1 ATAATATA
* *
33109184 ATCATATT
1 ATAATATA
*
33109192 TTAATATA
1 ATAATATA
33109200 AT
1 AT
33109202 TATTATTCAA
Statistics
Matches: 32, Mismatches: 8, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
7 6 0.19
8 26 0.81
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (8 bp):
ATAATATA
Found at i:33110174 original size:18 final size:18
Alignment explanation
Indices: 33110138--33110176 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
33110128 ACTCTAAAAA
*
33110138 TTAAAAAAAAATATTTTT
1 TTAAAAAAAAATATATTT
33110156 TTAAAAAAAAAT-TCATTT
1 TTAAAAAAAAATAT-ATTT
33110174 TTA
1 TTA
33110177 GCCTTTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 1 0.05
18 18 0.95
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (18 bp):
TTAAAAAAAAATATATTT
Found at i:33111309 original size:61 final size:60
Alignment explanation
Indices: 33111188--33111310 Score: 140
Period size: 61 Copynumber: 2.0 Consensus size: 60
33111178 AAAAATATAC
* * * * * * *
33111188 TTATTAAATTTTTAGAGTTAGAACTAAATTGATAGATTTTGTAAATATTGAGGGTCAATT
1 TTATTAAATTTTTAGAATCAGAACTAAAATGACAAATTTTGCAAATATTGAGGCTCAATT
* *
33111248 TTATTGAATTTTTTAGAATCAGAACTAAAATGACAAATTTTGCAAATCTTGATGGCT-AATT
1 TTATT-AAATTTTTAGAATCAGAACTAAAATGACAAATTTTGCAAATATTGA-GGCTCAATT
33111309 TT
1 TT
33111311 TTTTTAAAAT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
60 5 0.10
61 44 0.85
62 3 0.06
ACGTcount: A:0.37, C:0.07, G:0.15, T:0.42
Consensus pattern (60 bp):
TTATTAAATTTTTAGAATCAGAACTAAAATGACAAATTTTGCAAATATTGAGGCTCAATT
Found at i:33113422 original size:25 final size:27
Alignment explanation
Indices: 33113373--33113424 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
33113363 GCATGTACCC
* *
33113373 ATTTATATATATATTTTATATTCTATA
1 ATTTATATATACATTTTAGATTCTATA
33113400 ATTTATATATACA-TTTAGA-TCTATA
1 ATTTATATATACATTTTAGATTCTATA
33113425 TATATTTTCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
25 6 0.26
26 5 0.22
27 12 0.52
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (27 bp):
ATTTATATATACATTTTAGATTCTATA
Found at i:33113426 original size:27 final size:28
Alignment explanation
Indices: 33113373--33113431 Score: 68
Period size: 27 Copynumber: 2.1 Consensus size: 28
33113363 GCATGTACCC
* * *
33113373 ATTTATATATATATTTTATATTCTATA-
1 ATTTATATATACATTTTAGATTATATAT
33113400 ATTTATATATACA-TTTAGATCTATATAT
1 ATTTATATATACATTTTAGAT-TATATAT
33113428 ATTT
1 ATTT
33113432 TCCTTACAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 6 0.22
27 17 0.63
28 4 0.15
ACGTcount: A:0.37, C:0.05, G:0.02, T:0.56
Consensus pattern (28 bp):
ATTTATATATACATTTTAGATTATATAT
Found at i:33114120 original size:108 final size:109
Alignment explanation
Indices: 33113900--33114190 Score: 473
Period size: 108 Copynumber: 2.7 Consensus size: 109
33113890 TTTCAAAAAG
* *
33113900 GGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCTCTAAGGTGCTGGGTGTCGTTTTTTCTC
1 GGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCACTAAGGTGCTGGGTGTCGATTTTTCTC
33113965 GTTTAACCAAATGGCTTAATATCCTTTTAAAAATTTTACAATGA
66 GTTTAACCAAATGGCTTAATATCCTTTTAAAAATTTTACAATGA
* *
33114009 GGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCACTAAGGTGCCGTGTGTC-ATTTTTCTC
1 GGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCACTAAGGTGCTGGGTGTCGATTTTTCTC
33114073 GTTTAACCAAATGGCTTAATATCCTTTTAAAAATTTTACAATGA
66 GTTTAACCAAATGGCTTAATATCCTTTTAAAAATTTTACAATGA
* * * * *
33114117 GGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGTTTCGA--TTTCTC
1 GGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCACTAAGGTGCTGGGTGTCGATTTTTCTC
33114179 GTTTAACCAAAT
66 GTTTAACCAAAT
33114191 TGCCAAATAT
Statistics
Matches: 170, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
106 18 0.11
107 20 0.12
108 80 0.47
109 52 0.31
ACGTcount: A:0.27, C:0.16, G:0.21, T:0.36
Consensus pattern (109 bp):
GGCAATGTTTTGCATTTGGAAATTCGAGAAAACATGCACTAAGGTGCTGGGTGTCGATTTTTCTC
GTTTAACCAAATGGCTTAATATCCTTTTAAAAATTTTACAATGA
Found at i:33114719 original size:15 final size:15
Alignment explanation
Indices: 33114699--33114732 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
33114689 ATTTTGTTGC
*
33114699 AAAAATTATAATTTA
1 AAAAATTATAATTGA
33114714 AAAAATTATAATTGA
1 AAAAATTATAATTGA
33114729 AAAA
1 AAAA
33114733 GTAAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.32
Consensus pattern (15 bp):
AAAAATTATAATTGA
Found at i:33128175 original size:40 final size:40
Alignment explanation
Indices: 33128131--33128360 Score: 241
Period size: 40 Copynumber: 5.8 Consensus size: 40
33128121 TATTTATCGA
33128131 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCT
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCT
* * *
33128171 TGATTGCACATATGTGCCCCAGTTTGTGCTTC-AGTA-CCT
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGA-TACCCT
* *
33128210 CTGATTGCACATACGTGCCCTTGTTTGTACTTCTG-TACCCC
1 -TGATTGCACATACGTGCCCCTGTTTGTACTTC-GATACCCT
* * * * *
33128251 TAATTTCACATACGTGCCCATGTTTGTACTTCGGTACCCC
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCT
* * * ** * *
33128291 TAATTTCACTTGTGTGCCCCTGTTTGTACTTTGGTACCCT
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCT
* *
33128331 TGATTGCACATTCGTGCCCATGTTTGTACT
1 TGATTGCACATACGTGCCCCTGTTTGTACT
33128361 GATGTACCCC
Statistics
Matches: 161, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
39 5 0.03
40 154 0.96
41 2 0.01
ACGTcount: A:0.17, C:0.28, G:0.18, T:0.38
Consensus pattern (40 bp):
TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCT
Found at i:33128224 original size:80 final size:79
Alignment explanation
Indices: 33128131--33128400 Score: 285
Period size: 80 Copynumber: 3.4 Consensus size: 79
33128121 TATTTATCGA
33128131 TGATTGCACATACGTGCCCCTGTTTGTACTTCGATACCCTTGATTGCACATATGTGCCCCA-GTT
1 TGATTGCACATACGTGCCCCTGTTTGTACTTCG-TACCCTTGATTGCACATATGTG-CCCATGTT
* *
33128195 TGTGCTTCAGTACCTC
64 TGTACTTCAGTACCCC
* * * * *
33128211 TGATTGCACATACGTGCCCTTGTTTGTACTTCTGTACCCCTAATTTCACATACGTGCCCATGTTT
1 TGATTGCACATACGTGCCCCTGTTTGTACTTC-GTACCCTTGATTGCACATATGTGCCCATGTTT
*
33128276 GTACTTCGGTACCCC
65 GTACTTCAGTACCCC
* * * ** *
33128291 TAATTTCACTTGTGTGCCCCTGTTTGTACTTTGGTACCCTTGATTGCACAT-TCGTGCCCATGTT
1 TGATTGCACATACGTGCCCCTGTTTGTAC-TTCGTACCCTTGATTGCACATAT-GTGCCCATGTT
*
33128355 TGTAC-TGATGTACCCC
64 TGTACTTCA-GTACCCC
* ** * *
33128371 TGAATATACATATGTGCCCCTGTTTATACT
1 TGATTGCACATACGTGCCCCTGTTTGTACT
33128401 CTGGTAACCC
Statistics
Matches: 157, Mismatches: 28, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
79 6 0.04
80 148 0.94
81 3 0.02
ACGTcount: A:0.18, C:0.27, G:0.17, T:0.37
Consensus pattern (79 bp):
TGATTGCACATACGTGCCCCTGTTTGTACTTCGTACCCTTGATTGCACATATGTGCCCATGTTTG
TACTTCAGTACCCC
Found at i:33128328 original size:120 final size:121
Alignment explanation
Indices: 33128137--33128400 Score: 336
Period size: 120 Copynumber: 2.2 Consensus size: 121
33128127 TCGATGATTG
* * *
33128137 CACATACGTGCCCCTGTTTGTACTTCGATACCCTTGATTGCACATATGTGCCCCAGTTTGTGCTT
1 CACATACGTGCCCCTGTTTGTACTTCGATACCCCTAATTGCACATATGTGCCCCAGTTTGTACTT
* ** *
33128202 CAGTA-CCTCTGATTGCACATACGTGCCCTTGTTTGTACTTCTGTACCCCT-AATTT
66 CAGTACCCT-TGATTGCACATACGTGCCCATGTTTGTACTGATGTACCCCTGAATAT
* * * * * *
33128257 CACATACGTGCCCATGTTTGTACTTCGGTACCCCTAATTTCACTTGTGTGCCCCTGTTTGTACTT
1 CACATACGTGCCCCTGTTTGTACTTCGATACCCCTAATTGCACATATGTGCCCCAGTTTGTACTT
** *
33128322 TGGTACCCTTGATTGCACATTCGTGCCCATGTTTGTACTGATGTACCCCTGAATAT
66 CAGTACCCTTGATTGCACATACGTGCCCATGTTTGTACTGATGTACCCCTGAATAT
* *
33128378 -ACATATGTGCCCCTGTTTATACT
1 CACATACGTGCCCCTGTTTGTACT
33128401 CTGGTAACCC
Statistics
Matches: 123, Mismatches: 19, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
120 116 0.94
121 7 0.06
ACGTcount: A:0.18, C:0.28, G:0.17, T:0.37
Consensus pattern (121 bp):
CACATACGTGCCCCTGTTTGTACTTCGATACCCCTAATTGCACATATGTGCCCCAGTTTGTACTT
CAGTACCCTTGATTGCACATACGTGCCCATGTTTGTACTGATGTACCCCTGAATAT
Found at i:33128388 original size:40 final size:40
Alignment explanation
Indices: 33128137--33128400 Score: 223
Period size: 40 Copynumber: 6.6 Consensus size: 40
33128127 TCGATGATTG
* * * * *
33128137 CACATACGTGCCCCTGTTTGTACTTC-GATACCCTTGATTG
1 CACATATGTGCCCATGTTTGTACTTCTG-TACCCCTAATTT
* * * * *
33128177 CACATATGTGCCCCA-GTTTGTGCTTCAGTACCTCTGATTG
1 CACATATGTG-CCCATGTTTGTACTTCTGTACCCCTAATTT
* *
33128217 CACATACGTGCCCTTGTTTGTACTTCTGTACCCCTAATTT
1 CACATATGTGCCCATGTTTGTACTTCTGTACCCCTAATTT
* *
33128257 CACATACGTGCCCATGTTTGTACTTCGGTACCCCTAATTT
1 CACATATGTGCCCATGTTTGTACTTCTGTACCCCTAATTT
* * * * * *
33128297 CACTTGTGTGCCCCTGTTTGTACTT-TGGTACCCTTGATTG
1 CACATATGTGCCCATGTTTGTACTTCT-GTACCCCTAATTT
** *
33128337 CACAT-TCGTGCCCATGTTTGTACTGATGTACCCCTGAATAT
1 CACATAT-GTGCCCATGTTTGTACTTCTGTACCCCT-AATTT
* *
33128378 -ACATATGTGCCCCTGTTTATACT
1 CACATATGTGCCCATGTTTGTACT
33128401 CTGGTAACCC
Statistics
Matches: 185, Mismatches: 31, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
39 4 0.02
40 173 0.94
41 8 0.04
ACGTcount: A:0.18, C:0.28, G:0.17, T:0.37
Consensus pattern (40 bp):
CACATATGTGCCCATGTTTGTACTTCTGTACCCCTAATTT
Found at i:33128398 original size:20 final size:20
Alignment explanation
Indices: 33128344--33128400 Score: 53
Period size: 20 Copynumber: 2.9 Consensus size: 20
33128334 TTGCACATTC
* *
33128344 GTGCCCATGTTTGTACTGAT
1 GTGCCCCTGTTTATACTGAT
* **
33128364 GTACCCCTGAATATACAT-AT
1 GTGCCCCTGTTTATAC-TGAT
33128384 GTGCCCCTGTTTATACT
1 GTGCCCCTGTTTATACT
33128401 CTGGTAACCC
Statistics
Matches: 28, Mismatches: 8, Indels: 3
0.72 0.21 0.08
Matches are distributed among these distances:
19 1 0.04
20 26 0.93
21 1 0.04
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.37
Consensus pattern (20 bp):
GTGCCCCTGTTTATACTGAT
Found at i:33134249 original size:38 final size:38
Alignment explanation
Indices: 33134188--33134368 Score: 158
Period size: 38 Copynumber: 4.9 Consensus size: 38
33134178 ATTACACCGG
* * * * *
33134188 CACAAAGTCAGCTAAGCATAGAGCCCAAATAACACAAA
1 CACAAAGCCTGCTAGGCACAGAGCCCGAATAACACAAA
* *
33134226 CACAAAGCCTGCTAGGCACAGAGCCC-AATTAACACCAG
1 CACAAAGCCTGCTAGGCACAGAGCCCGAA-TAACACAAA
* * *
33134264 CACAAAGCCTACTAGGCACATA-CCTGAAT---A-AAA
1 CACAAAGCCTGCTAGGCACAGAGCCCGAATAACACAAA
* * * ***
33134297 CTCAAAGCTTGCTAGGCACACAGCCCGAATAACACCTG
1 CACAAAGCCTGCTAGGCACAGAGCCCGAATAACACAAA
*
33134335 CACAAAGCCTGCTAGGCACATAGCCCGAATAACA
1 CACAAAGCCTGCTAGGCACAGAGCCCGAATAACA
33134369 GCGTTTCTAT
Statistics
Matches: 114, Mismatches: 22, Indels: 14
0.76 0.15 0.09
Matches are distributed among these distances:
33 19 0.17
34 7 0.06
37 6 0.05
38 82 0.72
ACGTcount: A:0.40, C:0.31, G:0.16, T:0.13
Consensus pattern (38 bp):
CACAAAGCCTGCTAGGCACAGAGCCCGAATAACACAAA
Found at i:33134312 original size:71 final size:72
Alignment explanation
Indices: 33134223--33134366 Score: 211
Period size: 71 Copynumber: 2.0 Consensus size: 72
33134213 CAAATAACAC
*
33134223 AAACACAAAGCCTGCTAGGCACAGAGCCC-AATTAACACCAGCACAAAGCCTACTAGGCACATA-
1 AAACACAAAGCCTGCTAGGCACACAGCCCGAA-TAACACCAGCACAAAGCCTACTAGGCACATAG
*
33134286 CCTGAATA
65 CCCGAATA
* * * *
33134294 AAACTCAAAGCTTGCTAGGCACACAGCCCGAATAACACCTGCACAAAGCCTGCTAGGCACATAGC
1 AAACACAAAGCCTGCTAGGCACACAGCCCGAATAACACCAGCACAAAGCCTACTAGGCACATAGC
33134359 CCGAATA
66 CCGAATA
33134366 A
1 A
33134367 CAGCGTTTCT
Statistics
Matches: 65, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
71 55 0.85
72 10 0.15
ACGTcount: A:0.39, C:0.31, G:0.17, T:0.13
Consensus pattern (72 bp):
AAACACAAAGCCTGCTAGGCACACAGCCCGAATAACACCAGCACAAAGCCTACTAGGCACATAGC
CCGAATA
Found at i:33138117 original size:40 final size:40
Alignment explanation
Indices: 33138059--33138367 Score: 296
Period size: 40 Copynumber: 7.8 Consensus size: 40
33138049 TATTTATCGA
*
33138059 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
1 TGATTGCACATACATGCCCCTATTTGTACTTCGGTACCCC
*
33138099 TGATTGCACATACATGCCCCTGTTTGTACTTCGGTACCCC
1 TGATTGCACATACATGCCCCTATTTGTACTTCGGTACCCC
* * * *
33138139 TGATTGCACAAACATGCCCTTGTTTGTACTTTGGTACCCC
1 TGATTGCACATACATGCCCCTATTTGTACTTCGGTACCCC
* ** * * *
33138179 TAATAACACATACATACCCTTATTTGTACTTCGGTA-CCA
1 TGATTGCACATACATGCCCCTATTTGTACTTCGGTACCCC
** * * *
33138218 TGATTGTTCATACGTGTCCCTATTTGGACTTCGGTACCCC
1 TGATTGCACATACATGCCCCTATTTGTACTTCGGTACCCC
* ** * *
33138258 TAATTGCACATATGTGCCCCTGTCTGTACTTCGGTACCCC
1 TGATTGCACATACATGCCCCTATTTGTACTTCGGTACCCC
* *** * * * *
33138298 TGATTACACATTTGTGCCCATGTTTGTACTTCGTTACCCT
1 TGATTGCACATACATGCCCCTATTTGTACTTCGGTACCCC
* * * * *
33138338 TAAATGAACTTACATGCCCCTATTTATACT
1 TGATTGCACATACATGCCCCTATTTGTACT
33138368 CTAGTAATCC
Statistics
Matches: 218, Mismatches: 50, Indels: 2
0.81 0.19 0.01
Matches are distributed among these distances:
39 28 0.13
40 190 0.87
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.35
Consensus pattern (40 bp):
TGATTGCACATACATGCCCCTATTTGTACTTCGGTACCCC
Found at i:33138118 original size:20 final size:20
Alignment explanation
Indices: 33138095--33138157 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
33138085 TACTTCGGTA
33138095 CCCCTGATTGCACATACATG
1 CCCCTGATTGCACATACATG
* * * * *
33138115 CCCCTGTTTGTAC-TTCGGTA
1 CCCCTGATTGCACATAC-ATG
*
33138135 CCCCTGATTGCACAAACATG
1 CCCCTGATTGCACATACATG
33138155 CCC
1 CCC
33138158 TTGTTTGTAC
Statistics
Matches: 30, Mismatches: 11, Indels: 4
0.67 0.24 0.09
Matches are distributed among these distances:
19 2 0.07
20 27 0.90
21 1 0.03
ACGTcount: A:0.21, C:0.37, G:0.16, T:0.27
Consensus pattern (20 bp):
CCCCTGATTGCACATACATG
Found at i:33138147 original size:80 final size:80
Alignment explanation
Indices: 33138059--33138367 Score: 332
Period size: 80 Copynumber: 3.9 Consensus size: 80
33138049 TATTTATCGA
*
33138059 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCACATACATGCCCCTGTTT
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTAATTGCACATACATGCCCCTGTTT
33138124 GTACTTCGGTACCCC
66 GTACTTCGGTACCCC
* * * * * ** * * *
33138139 TGATTGCACAAACATGCCCTTGTTTGTACTTTGGTACCCCTAATAACACATACATACCCTTATTT
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTAATTGCACATACATGCCCCTGTTT
*
33138204 GTACTTCGGTA-CCA
66 GTACTTCGGTACCCC
** * * ** *
33138218 TGATTGTTCATACGTGTCCCTATTTGGACTTCGGTACCCCTAATTGCACATATGTGCCCCTGTCT
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTAATTGCACATACATGCCCCTGTTT
33138283 GTACTTCGGTACCCC
66 GTACTTCGGTACCCC
* ** * * * * * * * *
33138298 TGATTACACATTTGTGCCCATGTTTGTACTTCGTTACCCTTAAATGAACTTACATGCCCCTATTT
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTAATTGCACATACATGCCCCTGTTT
*
33138363 ATACT
66 GTACT
33138368 CTAGTAATCC
Statistics
Matches: 179, Mismatches: 49, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
79 61 0.34
80 118 0.66
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.35
Consensus pattern (80 bp):
TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTAATTGCACATACATGCCCCTGTTT
GTACTTCGGTACCCC
Found at i:33138264 original size:119 final size:120
Alignment explanation
Indices: 33138065--33138362 Score: 310
Period size: 119 Copynumber: 2.5 Consensus size: 120
33138055 TCGATGATTG
* * * * *
33138065 CACATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCACATACATGCCCCTGTTTGTACTT
1 CACATACATACCCCTATTTGTACTTCGGTACCCATGATTGCACATACATGCCCCTATTTGGACTT
* * * *
33138130 CGGTACCCCTGATTGCACAAACATGCCCTTGTTTGTACTTTGGTACCCCTAATAA
66 CGGTACCCCTAATTGCACAAACATGCCCCTGTCTGTACTTCGGTACCCCTAATAA
* ** * *
33138185 CACATACATACCCTTATTTGTACTTCGGTA-CCATGATTGTTCATACGTGTCCCTATTTGGACTT
1 CACATACATACCCCTATTTGTACTTCGGTACCCATGATTGCACATACATGCCCCTATTTGGACTT
* ** * *
33138249 CGGTACCCCTAATTGCACATATGTGCCCCTGTCTGTACTTCGGTACCCCTGATTA
66 CGGTACCCCTAATTGCACAAACATGCCCCTGTCTGTACTTCGGTACCCCTAATAA
*** * * * * * * * * *
33138304 CACATTTGTGCCCATGTTTGTACTTCGTTACCCTTAAATGAACTTACATGCCCCTATTT
1 CACATACATACCCCTATTTGTACTTCGGTACCCATGATTGCACATACATGCCCCTATTT
33138363 ATACTCTAGT
Statistics
Matches: 143, Mismatches: 34, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
119 96 0.67
120 47 0.33
ACGTcount: A:0.21, C:0.29, G:0.15, T:0.35
Consensus pattern (120 bp):
CACATACATACCCCTATTTGTACTTCGGTACCCATGATTGCACATACATGCCCCTATTTGGACTT
CGGTACCCCTAATTGCACAAACATGCCCCTGTCTGTACTTCGGTACCCCTAATAA
Found at i:33138352 original size:159 final size:159
Alignment explanation
Indices: 33138058--33138367 Score: 406
Period size: 159 Copynumber: 1.9 Consensus size: 159
33138048 ATATTTATCG
* * *
33138058 ATGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTGATTGCACATACATGCCCCTGTT
1 ATGATTGCACATACGTGCCCCTATTTGGACTTCGGTACCCCTAATTGCACATACATGCCCCTGTC
* * *
33138123 TGTACTTCGGTACCCCTGATTGCACAAACATGCCCTTGTTTGTACTTTGGTACCCCTAATAACAC
66 TGTACTTCGGTACCCCTGATTACACAAACATGCCCATGTTTGTACTTCGGTACCCCTAATAACAC
* *
33138188 ATACATACCCTTATTTGTACTTCGGTACC
131 ATACATACCCCTATTTATACTTCGGTACC
** * **
33138217 ATGATTGTTCATACGTGTCCCTATTTGGACTTCGGTACCCCTAATTGCACATATGTGCCCCTGTC
1 ATGATTGCACATACGTGCCCCTATTTGGACTTCGGTACCCCTAATTGCACATACATGCCCCTGTC
**** * * *
33138282 TGTACTTCGGTACCCCTGATTACACATTTGTGCCCATGTTTGTACTTCGTTACCCTTAAATGA-A
66 TGTACTTCGGTACCCCTGATTACACAAACATGCCCATGTTTGTACTTCGGTACCCCT-AATAACA
* *
33138346 CTTACATGCCCCTATTTATACT
130 CATACATACCCCTATTTATACT
33138368 CTAGTAATCC
Statistics
Matches: 128, Mismatches: 22, Indels: 2
0.84 0.14 0.01
Matches are distributed among these distances:
159 124 0.97
160 4 0.03
ACGTcount: A:0.21, C:0.28, G:0.15, T:0.35
Consensus pattern (159 bp):
ATGATTGCACATACGTGCCCCTATTTGGACTTCGGTACCCCTAATTGCACATACATGCCCCTGTC
TGTACTTCGGTACCCCTGATTACACAAACATGCCCATGTTTGTACTTCGGTACCCCTAATAACAC
ATACATACCCCTATTTATACTTCGGTACC
Found at i:33146939 original size:41 final size:41
Alignment explanation
Indices: 33146882--33146986 Score: 165
Period size: 41 Copynumber: 2.6 Consensus size: 41
33146872 ACAGATTCAA
* *
33146882 CGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAAATCAC
1 CGGCACGTAGCCTGCTAGGCTTATAACCTGATTCAAATCAC
* *
33146923 CGGCACGTAGCCTGCTAGGTTTATAACCTGATTCAGATCAC
1 CGGCACGTAGCCTGCTAGGCTTATAACCTGATTCAAATCAC
*
33146964 CGGCACGTAGCCTGCTAGACTTA
1 CGGCACGTAGCCTGCTAGGCTTA
33146987 AAGTCTGAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 58 1.00
ACGTcount: A:0.24, C:0.29, G:0.22, T:0.26
Consensus pattern (41 bp):
CGGCACGTAGCCTGCTAGGCTTATAACCTGATTCAAATCAC
Found at i:33151701 original size:16 final size:16
Alignment explanation
Indices: 33151680--33151717 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
33151670 TAAATTACTG
*
33151680 ATTACAGCTCTATTCC
1 ATTACAGATCTATTCC
*
33151696 ATTACATATCTATTCC
1 ATTACAGATCTATTCC
33151712 ATTACA
1 ATTACA
33151718 ACCCTATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.26, G:0.03, T:0.39
Consensus pattern (16 bp):
ATTACAGATCTATTCC
Found at i:33151724 original size:16 final size:16
Alignment explanation
Indices: 33151689--33151730 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
33151679 GATTACAGCT
*
33151689 CTATTCCATTACATAT
1 CTATTCCATTACATAC
33151705 CTATTCCATTACA-ACC
1 CTATTCCATTACATA-C
*
33151721 CTATTTCATT
1 CTATTCCATT
33151731 GACTCCACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 1 0.04
16 22 0.96
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (16 bp):
CTATTCCATTACATAC
Found at i:33151841 original size:16 final size:17
Alignment explanation
Indices: 33151805--33151842 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
33151795 AAAAAAAGCA
33151805 AAAATAGAAAATGAATT
1 AAAATAGAAAATGAATT
* *
33151822 AAAATATAAAAT-ATTT
1 AAAATAGAAAATGAATT
33151838 AAAAT
1 AAAAT
33151843 TTATTGAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
16 8 0.42
17 11 0.58
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (17 bp):
AAAATAGAAAATGAATT
Found at i:33152802 original size:34 final size:33
Alignment explanation
Indices: 33152678--33152807 Score: 136
Period size: 34 Copynumber: 3.8 Consensus size: 33
33152668 TTTTAAAAAA
*
33152678 TAAATTAGGGTTTAGAGTTTTTTTTAAAAATTAAT
1 TAAATTAGGGTTT--AGTTTTTTTAAAAAATTAAT
* *** * *
33152713 TAAATTAGGTTTTAGGGGTTTAAAATAAATAAAT
1 TAAATTAGGGTTTAGTTTTTTTAAA-AAATTAAT
*
33152747 TAAATTAGGGTTTA-TAATTTTTAAGAAAATTAAT
1 TAAATTAGGGTTTAGT-TTTTTTAA-AAAATTAAT
33152781 TAAATTAGGGTTTAGTTTTTTTAAAAA
1 TAAATTAGGGTTTAGTTTTTTTAAAAA
33152808 TAATTTTTGT
Statistics
Matches: 77, Mismatches: 14, Indels: 10
0.76 0.14 0.10
Matches are distributed among these distances:
33 10 0.13
34 53 0.69
35 14 0.18
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.45
Consensus pattern (33 bp):
TAAATTAGGGTTTAGTTTTTTTAAAAAATTAAT
Found at i:33153087 original size:125 final size:126
Alignment explanation
Indices: 33152917--33153167 Score: 335
Period size: 125 Copynumber: 2.0 Consensus size: 126
33152907 AGTCGTTTTA
* * *
33152917 AAAAAATTAATTTTGAGAAGACGGTTCTAAAAAGATAATATCAAAAACGCTTCAAGCATGATGCA
1 AAAAAATTAATTTTGAGAAGACAGTTCTAAAAAGATAATACCAAAAACGCTTCAAGCAGGATGCA
* * *
33152982 CTGTCAGCAAAATTACTAAAAAAAGCTCCCACGTGAACGCTCTTTTTTTACAGTAGTTCCT
66 CTGTCAACAAAATTACTAAAAAAAGCTCCCACGTGAACGCTCTTTTTCTAAAGTAGTTCCT
* * * **
33153043 AAAAAA-TAATTTTGAGAAGACAGTTCTGAAAAA-ATAGTGCCAAAAATGCTTCAATTAGGATGC
1 AAAAAATTAATTTTGAGAAGACAGTTCT-AAAAAGATAATACCAAAAACGCTTCAAGCAGGATGC
* * * * *
33153106 ACTGTCAACAAAATTATTGAAAAAAGCTCTCACGTGGATGCTCTTTTTCTAAAGTAGTTCCT
65 ACTGTCAACAAAATTACTAAAAAAAGCTCCCACGTGAACGCTCTTTTTCTAAAGTAGTTCCT
33153168 GCTTGGCCTT
Statistics
Matches: 108, Mismatches: 16, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
125 97 0.90
126 11 0.10
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (126 bp):
AAAAAATTAATTTTGAGAAGACAGTTCTAAAAAGATAATACCAAAAACGCTTCAAGCAGGATGCA
CTGTCAACAAAATTACTAAAAAAAGCTCCCACGTGAACGCTCTTTTTCTAAAGTAGTTCCT
Found at i:33158935 original size:9 final size:9
Alignment explanation
Indices: 33158918--33158954 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
33158908 TTTTTTTTCG
33158918 AATTCGAAT
1 AATTCGAAT
*
33158927 AACTCGAAT
1 AATTCGAAT
33158936 AATTCGAAT
1 AATTCGAAT
33158945 AATTCGAAT
1 AATTCGAAT
33158954 A
1 A
33158955 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:33159037 original size:30 final size:31
Alignment explanation
Indices: 33159003--33159063 Score: 97
Period size: 30 Copynumber: 2.0 Consensus size: 31
33158993 AAACCTTTTT
*
33159003 ACTTTTCCCTCAAAACTTTTACT-CCTTCCC
1 ACTTTTCCCCCAAAACTTTTACTCCCTTCCC
*
33159033 ACTTTTCCCCCAAAACTTTTATTCCCTTCCC
1 ACTTTTCCCCCAAAACTTTTACTCCCTTCCC
33159064 CTCCCAACCC
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
30 21 0.75
31 7 0.25
ACGTcount: A:0.20, C:0.41, G:0.00, T:0.39
Consensus pattern (31 bp):
ACTTTTCCCCCAAAACTTTTACTCCCTTCCC
Found at i:33172502 original size:41 final size:41
Alignment explanation
Indices: 33172415--33172492 Score: 120
Period size: 41 Copynumber: 1.9 Consensus size: 41
33172405 ATAGGTGAAA
* *
33172415 AAAAAAATCCTCAAATGAGGTATTTGTTTGACAGCTGGATG
1 AAAAAAATCCTCAAATGAGGTATTTGATTGACACCTGGATG
* *
33172456 AAAAAAATCCTCTAATGAGTTATTTGATTGACACCTG
1 AAAAAAATCCTCAAATGAGGTATTTGATTGACACCTG
33172493 TCTTAAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (41 bp):
AAAAAAATCCTCAAATGAGGTATTTGATTGACACCTGGATG
Found at i:33172502 original size:42 final size:41
Alignment explanation
Indices: 33172414--33172502 Score: 106
Period size: 41 Copynumber: 2.1 Consensus size: 41
33172404 TATAGGTGAA
* * *
33172414 AAAAAAAATCCTCAAATGAGGTATTTGTTTGACAGCTGGAT
1 AAAAAAAATCCTCAAATGAGGTATTTGATTGACACCTGCAT
* * * *
33172455 GAAAAAAATCCTCTAATGAGTTATTTGATTGACACCTGTCTT
1 AAAAAAAATCCTCAAATGAGGTATTTGATTGACACCTG-CAT
33172497 AAAAAA
1 AAAAAA
33172503 GGACATAAGT
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
41 33 0.85
42 6 0.15
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.30
Consensus pattern (41 bp):
AAAAAAAATCCTCAAATGAGGTATTTGATTGACACCTGCAT
Found at i:33175442 original size:51 final size:50
Alignment explanation
Indices: 33175358--33175454 Score: 167
Period size: 51 Copynumber: 1.9 Consensus size: 50
33175348 AGGTCCTAAC
33175358 ACTTGATGTAGTAAGTAGTGCTTTTAACATTGATTCTTTCTTGAAACTAT
1 ACTTGATGTAGTAAGTAGTGCTTTTAACATTGATTCTTTCTTGAAACTAT
* *
33175408 ACTTAGATGTAGTAAGTAGTGCTTTTAGCGTTGATTCTTTCTTGAAA
1 ACTT-GATGTAGTAAGTAGTGCTTTTAACATTGATTCTTTCTTGAAA
33175455 TTGGTATTAG
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
50 4 0.09
51 40 0.91
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.43
Consensus pattern (50 bp):
ACTTGATGTAGTAAGTAGTGCTTTTAACATTGATTCTTTCTTGAAACTAT
Found at i:33189392 original size:11 final size:11
Alignment explanation
Indices: 33189376--33189407 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
33189366 ATATTACAGA
33189376 TGCTACTTTAT
1 TGCTACTTTAT
33189387 TGCTACTTTAT
1 TGCTACTTTAT
33189398 TGCTACTTTA
1 TGCTACTTTA
33189408 GTGGCAACTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.19, C:0.19, G:0.09, T:0.53
Consensus pattern (11 bp):
TGCTACTTTAT
Found at i:33189600 original size:91 final size:91
Alignment explanation
Indices: 33189445--33189626 Score: 355
Period size: 91 Copynumber: 2.0 Consensus size: 91
33189435 TGTTATAATT
33189445 AGTTTTAATGACTTTAACAATCATATCACCAATTACCCATAAACAAACTTGTTTTACATAGATCC
1 AGTTTTAATGACTTTAACAATCATATCACCAATTACCCATAAACAAACTTGTTTTACATAGATCC
33189510 TAGAAGATTAGGAAACTTTATCCAGA
66 TAGAAGATTAGGAAACTTTATCCAGA
*
33189536 AGTTTTAATGACTTTAATAATCATATCACCAATTACCCATAAACAAACTTGTTTTACATAGATCC
1 AGTTTTAATGACTTTAACAATCATATCACCAATTACCCATAAACAAACTTGTTTTACATAGATCC
33189601 TAGAAGATTAGGAAACTTTATCCAGA
66 TAGAAGATTAGGAAACTTTATCCAGA
33189627 CAATTATGAG
Statistics
Matches: 90, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 90 1.00
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (91 bp):
AGTTTTAATGACTTTAACAATCATATCACCAATTACCCATAAACAAACTTGTTTTACATAGATCC
TAGAAGATTAGGAAACTTTATCCAGA
Done.