Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 117 of 173
Found at i:36242029 original size:27 final size:26
Alignment explanation
Indices: 36241978--36242040 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
36241968 TATTTAAAAT
*
36241978 ATATATTTAAAAAATATATATTATAAA
1 ATATATTTAAAAAATATATAATAT-AA
36242005 ATATATTTAAAATAATGA-A-AATATAA
1 ATATATTTAAAA-AAT-ATATAATATAA
*
36242031 AGATATTTAA
1 ATATATTTAA
36242041 CTAACTTAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 11 0.34
27 16 0.50
28 4 0.12
29 1 0.03
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (26 bp):
ATATATTTAAAAAATATATAATATAA
Found at i:36245557 original size:3 final size:3
Alignment explanation
Indices: 36245501--36245537 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
36245491 CTTATTAACT
* *
36245501 TTA TTA TTA TTA TTA TTA TTA TCA TTA TTA TCA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
36245538 ATTTTCATTA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:36245670 original size:20 final size:20
Alignment explanation
Indices: 36245634--36245671 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36245624 ATTTTATCTA
*
36245634 ATATATATAAATTTTTATAT
1 ATATATATAAATATTTATAT
*
36245654 ATATATATACATATTTAT
1 ATATATATAAATATTTAT
36245672 GTACGTATAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (20 bp):
ATATATATAAATATTTATAT
Found at i:36246185 original size:108 final size:108
Alignment explanation
Indices: 36245991--36246397 Score: 638
Period size: 108 Copynumber: 3.8 Consensus size: 108
36245981 TCAAAAAAGG
* * *
36245991 AAAATATTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTATTG
1 AAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
* *
36246056 GGTTTCAATTTCTCGTTCGACCAAATGACTTAATATCATTTTC
66 GGTTTCGATTTCTCGTTCGACCAAATGACTTAATATCCTTTTC
36246099 AAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
1 AAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
36246164 GGTTTCGATTTCTCGTTCGACCAAATGACTTAATATCCTTTTC
66 GGTTTCGATTTCTCGTTCGACCAAATGACTTAATATCCTTTTC
* * *
36246207 AAAAATTTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTACT
1 AAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAAGGTACT
* * *
36246272 GGGTGTCGATTTTTCTCGTTCAACCAAAT-AGCTAAATATCCTTTTC
65 GGGTTTCGA--TTTCTCGTTCGACCAAATGA-CTTAATATCCTTTTC
* * *
36246318 -AAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCTCTAGGGTGCTG
1 AAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
36246382 GGTTTCGATTTCTCGT
66 GGTTTCGATTTCTCGT
36246398 CTAACCAAAT
Statistics
Matches: 277, Mismatches: 18, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
107 8 0.03
108 147 0.53
109 47 0.17
110 44 0.16
111 31 0.11
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (108 bp):
AAAAAATTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
GGTTTCGATTTCTCGTTCGACCAAATGACTTAATATCCTTTTC
Found at i:36246385 original size:218 final size:217
Alignment explanation
Indices: 36245991--36246397 Score: 649
Period size: 218 Copynumber: 1.9 Consensus size: 217
36245981 TCAAAAAAGG
* * *
36245991 AAAATATTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTATTG
1 AAAATATTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAACATGCCCTAAGGTACTG
* * *
36246056 GGTTTCAATTTCTCGTTCGACCAAATGACTTAATATCATTTTCAAAAAATTTCAAAATAAGGCAA
66 GGTGTCAATTTCTCGTTCAACCAAATGACTAAATATCATTTTCAAAAAATTTCAAAATAAGGCAA
36246121 TGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTTCTCGTTCGACC
131 TGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTTCTCGTTCGACC
36246186 AAATGACTTAATATCCTTTTCA
196 AAATGACTTAATATCCTTTTCA
*
36246208 AAAAT-TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTACT
1 AAAATATTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAG-AAACATGCCCTAAGGTACT
* *
36246272 GGGTGTCGATTTTTCTCGTTCAACCAAAT-AGCTAAATATCCTTTTC-AAAAATTTCAAAATAAG
65 GGGTGTC-A-ATTTCTCGTTCAACCAAATGA-CTAAATATCATTTTCAAAAAATTTCAAAATAAG
* * *
36246335 GCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCTCTAGGGTGCTGGGTTTCGATTTCTCGT
127 GCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTTCTCGT
36246398 CTAACCAAAT
Statistics
Matches: 174, Mismatches: 12, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
216 38 0.22
217 27 0.16
218 79 0.45
219 30 0.17
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (217 bp):
AAAATATTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGAAACATGCCCTAAGGTACTG
GGTGTCAATTTCTCGTTCAACCAAATGACTAAATATCATTTTCAAAAAATTTCAAAATAAGGCAA
TGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGGGTTTCGATTTCTCGTTCGACC
AAATGACTTAATATCCTTTTCA
Found at i:36250161 original size:21 final size:21
Alignment explanation
Indices: 36250134--36250174 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
36250124 TGAGTCAAAC
*
36250134 AAAAAAAAATAAAAAATGAATG
1 AAAAAATAA-AAAAAATGAATG
*
36250156 AAAAAATGAAAAAAATGAA
1 AAAAAATAAAAAAAATGAA
36250175 AGAGTAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.78, C:0.00, G:0.10, T:0.12
Consensus pattern (21 bp):
AAAAAATAAAAAAAATGAATG
Found at i:36251556 original size:44 final size:43
Alignment explanation
Indices: 36251508--36251822 Score: 207
Period size: 44 Copynumber: 7.2 Consensus size: 43
36251498 AGACACAAAC
36251508 CTTGCCTCTCTCGGTTGAGATGGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTCTCGGTTGAGA-GGAGCTGGTTGAAGACAAAAGAT
* * * * ** *
36251552 CTTGCCTTTCT-GCATTGACAGCGAAGCAGGTCAAAGACATAA-A-
1 CTTGCCTCTCTCG-GTTGAGAG-G-AGCTGGTTGAAGACAAAAGAT
*
36251595 CTTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
1 C-TTGCCTCTCTCGGTTGAGA-GGAGCTGGTTGAAGACAAAAGAT
* * * ** * *
36251640 CTTGCCT-TCCTGCAG-TGACAGCGAAGCAGGTCAAAGACACAA-AC
1 CTTGCCTCT-CT-CGGTTGAGAG-G-AGCTGGTTGAAGACAAAAGAT
*
36251684 CTTGCCTCTCTCGGTTGTGACGGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTCTCGGTTGAGA-GGAGCTGGTTGAAGACAAAAGAT
* * * * * *
36251728 CTTGCCTTTCT-GCATTG-GCAGCGAAGCAGGTCGAAGACACAA-AC
1 CTTGCCTCTCTCG-GTTGAG-AG-G-AGCTGGTTGAAGACAAAAGAT
* *
36251772 CTTGTCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGAT
1 CTTGCCTCTCTCGGTTGAGA-GGAGCTGGTTGAAGACAAAAGAT
36251816 CTTGCCT
1 CTTGCCT
36251823 TCCTACAGTG
Statistics
Matches: 202, Mismatches: 45, Indels: 48
0.68 0.15 0.16
Matches are distributed among these distances:
43 53 0.26
44 96 0.48
45 53 0.26
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (43 bp):
CTTGCCTCTCTCGGTTGAGAGGAGCTGGTTGAAGACAAAAGAT
Found at i:36251893 original size:88 final size:88
Alignment explanation
Indices: 36251415--36251884 Score: 753
Period size: 88 Copynumber: 5.3 Consensus size: 88
36251405 AATGAAGTTG
* * * *
36251415 CAAACCTTACCTCTCTCGGTTGT-AGTGGAGTTGGTTGAAGATAACAGATCTTGCCTTCCTGCAG
1 CAAACCTTGCCTCTCTCGGTTGTGA-TGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCAG
* *
36251479 TGACAGTGAAGCATGTCAAAGACA
65 TGACAGCGAAGCAGGTCAAAGACA
* * *
36251503 CAAACCTTGCCTCTCTCGGTTGAGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTTCTGCATT
1 CAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCAGT
36251568 GACAGCGAAGCAGGTCAAAGACA
66 GACAGCGAAGCAGGTCAAAGACA
* *
36251591 TAAACTTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCAGT
1 CAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCAGT
36251656 GACAGCGAAGCAGGTCAAAGACA
66 GACAGCGAAGCAGGTCAAAGACA
* * *
36251679 CAAACCTTGCCTCTCTCGGTTGTGACGGAGCTGGTTGAAGACAAAAGATCTTGCCTTTCTGCATT
1 CAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCAGT
* *
36251744 GGCAGCGAAGCAGGTCGAAGACA
66 GACAGCGAAGCAGGTCAAAGACA
* *
36251767 CAAACCTTGTCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTACAGT
1 CAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCAGT
36251832 GACAGCGAAGCAGGTCAAAGACA
66 GACAGCGAAGCAGGTCAAAGACA
*
36251855 CAAACCTTGCCTCTCTCGGTTGTGACGGAG
1 CAAACCTTGCCTCTCTCGGTTGTGATGGAG
36251885 TAGATTGAAT
Statistics
Matches: 351, Mismatches: 30, Indels: 2
0.92 0.08 0.01
Matches are distributed among these distances:
88 350 1.00
89 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.25
Consensus pattern (88 bp):
CAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCAGT
GACAGCGAAGCAGGTCAAAGACA
Found at i:36252393 original size:125 final size:125
Alignment explanation
Indices: 36252154--36252384 Score: 293
Period size: 125 Copynumber: 1.8 Consensus size: 125
36252144 AATAGATTGG
*
36252154 AGATCGAAGATGGCAGATTGTACCTCACTATGACTACAGTAGAGTATATTGAAGCCGATAATTCT
1 AGATCGAAGAAGGCAGATTGTACCTCACTATGACTACAGTAGAGTATATTGAAGCCGATAATTCT
*** ** * *
36252219 ATTCCCTGGTTGGCAGTGGAATAGATTGAAGATTTCAGATCTTATTTCCCAAAGTGGAGC
66 ATTCCCTGGGCAGCAGTGGAATAGATCAAAGATTGCAGATCTTAGTTCCCAAAGTGGAGC
* * * * *
36252279 AGATTGAAGAAGGCAGATTTTACCTCCCTATGATTACAGTGGAGTATATTGAAGCC-AGTAATTC
1 AGATCGAAGAAGGCAGATTGTACCTCACTATGACTACAGTAGAGTATATTGAAGCCGA-TAATTC
* * *
36252343 TATCTCCTTGGGCAGTAGTGTAATAGATCAAAGATTGCAGAT
65 TAT-TCCCTGGGCAGCAGTGGAATAGATCAAAGATTGCAGAT
36252385 TCTGTTCCCC
Statistics
Matches: 89, Mismatches: 15, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
124 1 0.01
125 59 0.66
126 29 0.33
ACGTcount: A:0.31, C:0.16, G:0.23, T:0.30
Consensus pattern (125 bp):
AGATCGAAGAAGGCAGATTGTACCTCACTATGACTACAGTAGAGTATATTGAAGCCGATAATTCT
ATTCCCTGGGCAGCAGTGGAATAGATCAAAGATTGCAGATCTTAGTTCCCAAAGTGGAGC
Found at i:36253971 original size:3 final size:3
Alignment explanation
Indices: 36253918--36253951 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
36253908 CTTGTTAACT
* *
36253918 TTA TTA TTA TTA TTA TTA TCA TTA TTA TCA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
36253952 ATTTTCATTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.32, C:0.06, G:0.00, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:36254258 original size:24 final size:26
Alignment explanation
Indices: 36254231--36254281 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
36254221 TTTCTTTTTT
36254231 TATGTTCA-TTTATGTATTT-GTTTA
1 TATGTTCATTTTATGTATTTAGTTTA
*
36254255 TATGTTCATTTTATGTTTTTAGTTTA
1 TATGTTCATTTTATGTATTTAGTTTA
36254281 T
1 T
36254282 TTATTTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 8 0.33
25 10 0.42
26 6 0.25
ACGTcount: A:0.20, C:0.04, G:0.12, T:0.65
Consensus pattern (26 bp):
TATGTTCATTTTATGTATTTAGTTTA
Found at i:36254709 original size:109 final size:108
Alignment explanation
Indices: 36254403--36254941 Score: 784
Period size: 109 Copynumber: 5.0 Consensus size: 108
36254393 TCAAAAAAGG
*
36254403 AAAATATTTCAAAATAAGGCAATATTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
1 AAAAT-TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTG
* *
36254468 GGTTTCGATTTCTCGTTCGACCAAATGACTTAATATCCTTTTCC
65 GGTTTCGATTTCTCGTTCGACCAAATGACTAAATATCCTTTTCA
* *
36254512 AAAATTTTCAAAATAAGGCAATATTTTGCATTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
1 AAAATTTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
36254577 GTTTCGATTTCTCGTTCGACCAAAT-AGCTAAATATCCTTTT-A
66 GTTTCGATTTCTCGTTCGACCAAATGA-CTAAATATCCTTTTCA
*
36254619 AAAACTTTTCAAAAATAAGGTAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACT
1 AAAA-TTTTC-AAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACT
* *
36254684 AGGTTTCGATTTCTCGTTCGACCAAATGACTTAATATCCTTTTCA
64 GGGTTTCGATTTCTCGTTCGACCAAATGACTAAATATCCTTTTCA
* * * *
36254729 ACAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTACTG
1 AAAATTTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAAGGTACTG
* * *
36254794 GGTGTCGATTTTTCTCGTTCAACAAAAT-AGCTAAATATCCTTTTCA
65 GGTTTCGA--TTTCTCGTTCGACCAAATGA-CTAAATATCCTTTTCA
* *
36254840 AAAA-TTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCTCTAAGGTGCTGG
1 AAAATTTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
*
36254904 GTTTCGATTTCTCG-TCTAACCAAATTGAC-AAATATCCT
66 GTTTCGATTTCTCGTTC-GACCAAA-TGACTAAATATCCT
36254942 CTTGAATTTT
Statistics
Matches: 392, Mismatches: 26, Indels: 26
0.88 0.06 0.06
Matches are distributed among these distances:
106 2 0.01
107 27 0.07
108 138 0.35
109 147 0.38
110 44 0.11
111 34 0.09
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.34
Consensus pattern (108 bp):
AAAATTTTCAAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGGAACGTGCCCTAAGGTACTGG
GTTTCGATTTCTCGTTCGACCAAATGACTAAATATCCTTTTCA
Found at i:36255987 original size:18 final size:18
Alignment explanation
Indices: 36255964--36256000 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
36255954 GCCAGGTGCA
*
36255964 TATCCTAGCCCTTATATG
1 TATCCTAACCCTTATATG
36255982 TATCCTAACCCTTATATG
1 TATCCTAACCCTTATATG
36256000 T
1 T
36256001 TTCATTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.24, C:0.27, G:0.08, T:0.41
Consensus pattern (18 bp):
TATCCTAACCCTTATATG
Found at i:36256279 original size:21 final size:21
Alignment explanation
Indices: 36256255--36256330 Score: 100
Period size: 21 Copynumber: 3.6 Consensus size: 21
36256245 ACAACCAGAA
*
36256255 CAACCACAACCCCTATCGGAG
1 CAACCACAACCCCTGTCGGAG
* *
36256276 CAACCATAACCCCTGTCAGAG
1 CAACCACAACCCCTGTCGGAG
*
36256297 CAACCATAA-CCCTCGTCGGAG
1 CAACCACAACCCCT-GTCGGAG
36256318 CAACCACAACCCC
1 CAACCACAACCCC
36256331 CGCCAGAAGC
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
20 4 0.08
21 41 0.85
22 3 0.06
ACGTcount: A:0.33, C:0.43, G:0.13, T:0.11
Consensus pattern (21 bp):
CAACCACAACCCCTGTCGGAG
Found at i:36256556 original size:62 final size:59
Alignment explanation
Indices: 36256436--36256560 Score: 162
Period size: 62 Copynumber: 2.1 Consensus size: 59
36256426 ATATTTGTAC
* * * **
36256436 AAATTGTTTTTATATTGTTTCATTTAATAAAATAAAAGTTGTTTTGAATATTTTAATAG
1 AAATTATTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAATGCAATAG
36256495 TAAATTATTTTTATATT-TTGTCTTATTTAATAAAATAAAAGTTCTTTTGAATAATGCAATAG
1 -AAATTATTTTTATATTGTT-TC--ATTTAATAAAATAAAAGTTCTTTTGAATAATGCAATAG
36256557 AAAT
1 AAAT
36256561 AATGCAACAT
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
59 2 0.04
60 17 0.30
61 4 0.07
62 34 0.60
ACGTcount: A:0.39, C:0.03, G:0.09, T:0.49
Consensus pattern (59 bp):
AAATTATTTTTATATTGTTTCATTTAATAAAATAAAAGTTCTTTTGAATAATGCAATAG
Found at i:36259889 original size:125 final size:124
Alignment explanation
Indices: 36259578--36259951 Score: 461
Period size: 125 Copynumber: 3.0 Consensus size: 124
36259568 TAAGGTCAAA
* * *
36259578 CAGGAACTACTATAGAAAAA-AAAGTCCACGTGGGAGCTTTCTCG--GTAATTTTGCTGACAATG
1 CAGGAACTACTGTAGAAAAAGAGAGTCCACGTGGGAGCTTT-T-GTAGTAATTTTGCTGACAGTG
* *
36259640 CATCCTACTTGAAGTGTTTTTGACACTATTTTTT-AGAACCATCTTCTCAAAATTATTTTT
64 CATCCTACTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTT
* * * * *
36259700 CAGGAACTATTGTAGAAAAAGAGCGTCCACGTGGGAGTTTTTTTCAGTAATTTTGCTAACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGAGTCCACGTGGGAGCTTTTGT-AGTAATTTTGCTGACAGTGC
* * *
36259765 ATCCTGCTTGAAGCGTTTTTG-CAACTATTTTTTCAGAACCGTATTTTCAAAATTATTTTTT
65 ATCCTACTTGAAGCGTTTTTGAC-ACTATTTTTTCAGAACCGTCTTCTCAAAATTA-TTTTT
* * *
36259826 CAGGAACTACTGTAGAAAAAGAGTGTCCACGTGGGAACTTTTGTAGTAATTTTGCTGATAGTGCA
1 CAGGAACTACTGTAGAAAAAGAGAGTCCACGTGGGAGCTTTTGTAGTAATTTTGCTGACAGTGCA
* * * * * *
36259891 TCTTACTTGAAGCATTTTTGACATTATCTTTTCAGAATCGTCTCCTCAAAATTAATTTTT
66 TCCTACTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATT-ATTTTT
36259951 C
1 C
36259952 TAAAACTACT
Statistics
Matches: 214, Mismatches: 29, Indels: 15
0.83 0.11 0.06
Matches are distributed among these distances:
122 19 0.09
123 18 0.08
124 46 0.21
125 85 0.40
126 46 0.21
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.37
Consensus pattern (124 bp):
CAGGAACTACTGTAGAAAAAGAGAGTCCACGTGGGAGCTTTTGTAGTAATTTTGCTGACAGTGCA
TCCTACTTGAAGCGTTTTTGACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTT
Found at i:36260069 original size:34 final size:33
Alignment explanation
Indices: 36260028--36260141 Score: 129
Period size: 34 Copynumber: 3.4 Consensus size: 33
36260018 CACAAAATTA
36260028 TTTTTAAAAAAACTAAACCCTAATTTAATTAAT
1 TTTTTAAAAAAACTAAACCCTAATTTAATTAAT
** *
36260061 TTTCTTAAAAACTCTAAACCTTAATTTAATTAAT
1 TTT-TTAAAAAAACTAAACCCTAATTTAATTAAT
* *** *
36260095 TAATTTAAAACCCCTAAAACCTAATTTAATTAAT
1 T-TTTTAAAAAAACTAAACCCTAATTTAATTAAT
*
36260129 TTTTAAAAAAAAC
1 TTTTTAAAAAAAC
36260142 ACTAAACCTT
Statistics
Matches: 66, Mismatches: 13, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
33 10 0.15
34 55 0.83
35 1 0.02
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.39
Consensus pattern (33 bp):
TTTTTAAAAAAACTAAACCCTAATTTAATTAAT
Found at i:36260096 original size:69 final size:68
Alignment explanation
Indices: 36260030--36260157 Score: 168
Period size: 68 Copynumber: 1.9 Consensus size: 68
36260020 CAAAATTATT
* * *
36260030 TTTAAAAAAACTAAACCCTAATTTAATTAATTTTCT-TAAAAACTCTAAACCTTAATTTAATTAA
1 TTTAAAAAAACTAAAACCTAATTTAATTAATTTT-TAAAAAAACACTAAACCTTAATTTAATTAA
36260094 TTAA
65 TTAA
*** *
36260098 TTTAAAACCCCTAAAACCTAATTTAATTAATTTTTAAAAAAAACACTAAACCTTGATTTA
1 TTTAAAAAAACTAAAACCTAATTTAATTAATTTTT-AAAAAAACACTAAACCTTAATTTA
36260158 TTTTTAAAAA
Statistics
Matches: 51, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
67 1 0.02
68 30 0.59
69 20 0.39
ACGTcount: A:0.47, C:0.15, G:0.01, T:0.38
Consensus pattern (68 bp):
TTTAAAAAAACTAAAACCTAATTTAATTAATTTTTAAAAAAACACTAAACCTTAATTTAATTAAT
TAA
Found at i:36260149 original size:34 final size:32
Alignment explanation
Indices: 36260023--36260150 Score: 127
Period size: 34 Copynumber: 3.8 Consensus size: 32
36260013 CTAAACACAA
36260023 AATT-ATTTTTAAAAAA-ACTAAACCCTAATTT
1 AATTAATTTTTAAAAAACACTAAA-CCTAATTT
* *
36260054 AATTAATTTTCTTAAAAACTCTAAACCTTAATTT
1 AATTAATTTT-TAAAAAACACTAAACC-TAATTT
* *
36260088 AATTAATTAATTT-AAAACCCCTAAAACCTAATTT
1 AATTAATT--TTTAAAAAACACT-AAACCTAATTT
36260122 AATTAATTTTTAAAAAAAACACTAAACCT
1 AATTAATTTTT--AAAAAACACTAAACCT
36260151 TGATTTATTT
Statistics
Matches: 81, Mismatches: 6, Indels: 17
0.78 0.06 0.16
Matches are distributed among these distances:
31 4 0.05
32 8 0.10
33 8 0.10
34 46 0.57
35 13 0.16
36 2 0.02
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.38
Consensus pattern (32 bp):
AATTAATTTTTAAAAAACACTAAACCTAATTT
Found at i:36263443 original size:15 final size:16
Alignment explanation
Indices: 36263381--36263446 Score: 55
Period size: 15 Copynumber: 4.1 Consensus size: 16
36263371 ATCTAATATG
*
36263381 TATATCTTTCCACAAGA
1 TATATCTTT-CATAAGA
* *
36263398 TA-CTCTTTCATAGGGA
1 TATATCTTTCATA-AGA
*
36263414 TATATCTTTTAATAAGA
1 TATATC-TTTCATAAGA
36263431 TATA-CTTTCATAAGA
1 TATATCTTTCATAAGA
36263446 T
1 T
36263447 TGTGTTGTTT
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
15 13 0.33
16 10 0.26
17 10 0.26
18 6 0.15
ACGTcount: A:0.35, C:0.15, G:0.09, T:0.41
Consensus pattern (16 bp):
TATATCTTTCATAAGA
Found at i:36264150 original size:56 final size:56
Alignment explanation
Indices: 36264064--36264179 Score: 223
Period size: 56 Copynumber: 2.1 Consensus size: 56
36264054 GTTATACTAC
36264064 CTAAGAATGTCTCTCATTTGCCTTCAGAATAATAATAAATGAATGGATGATCCTCT
1 CTAAGAATGTCTCTCATTTGCCTTCAGAATAATAATAAATGAATGGATGATCCTCT
*
36264120 CTAAGAATGTCTCTCATTTGCCTTTAGAATAATAATAAATGAATGGATGATCCTCT
1 CTAAGAATGTCTCTCATTTGCCTTCAGAATAATAATAAATGAATGGATGATCCTCT
36264176 CTAA
1 CTAA
36264180 CTTGGTGATG
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.34
Consensus pattern (56 bp):
CTAAGAATGTCTCTCATTTGCCTTCAGAATAATAATAAATGAATGGATGATCCTCT
Found at i:36264717 original size:23 final size:23
Alignment explanation
Indices: 36264682--36264729 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
36264672 TTTTTTCCAT
*
36264682 AAAAATGATTAAAAAATCATAAA
1 AAAAATGAATAAAAAATCATAAA
*
36264705 AAAAATTAATAAAAAATCATAAA
1 AAAAATGAATAAAAAATCATAAA
36264728 AA
1 AA
36264730 TTACCAAAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.73, C:0.04, G:0.02, T:0.21
Consensus pattern (23 bp):
AAAAATGAATAAAAAATCATAAA
Found at i:36264731 original size:20 final size:20
Alignment explanation
Indices: 36264679--36264732 Score: 63
Period size: 23 Copynumber: 2.5 Consensus size: 20
36264669 ATATTTTTTC
* *
36264679 CATAAAAATGATTAAAAAAT
1 CATAAAAATTAATAAAAAAT
36264699 CATAAAAAAAATTAATAAAAAAT
1 CAT---AAAAATTAATAAAAAAT
36264722 CATAAAAATTA
1 CATAAAAATTA
36264733 CCAAAAAATA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
20 11 0.38
23 18 0.62
ACGTcount: A:0.69, C:0.06, G:0.02, T:0.24
Consensus pattern (20 bp):
CATAAAAATTAATAAAAAAT
Found at i:36264752 original size:20 final size:20
Alignment explanation
Indices: 36264700--36264745 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
36264690 TTAAAAAATC
* **
36264700 ATAAAAAAAATTAATAAAAA
1 ATAATAAAAATTACCAAAAA
*
36264720 ATCATAAAAATTACCAAAAA
1 ATAATAAAAATTACCAAAAA
36264740 ATAATA
1 ATAATA
36264746 TATATTAAAA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.22
Consensus pattern (20 bp):
ATAATAAAAATTACCAAAAA
Found at i:36271986 original size:17 final size:18
Alignment explanation
Indices: 36271944--36271986 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 18
36271934 TAAGTTTACA
36271944 TATTTTTTAATATTTTTT
1 TATTTTTTAATATTTTTT
36271962 TATTTTTTACA-A-TTTTT
1 TATTTTTTA-ATATTTTTT
36271979 TATTTTTT
1 TATTTTTT
36271987 TAACAATTCT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
17 13 0.54
18 10 0.42
19 1 0.04
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (18 bp):
TATTTTTTAATATTTTTT
Found at i:36271992 original size:19 final size:19
Alignment explanation
Indices: 36271946--36272009 Score: 69
Period size: 18 Copynumber: 3.4 Consensus size: 19
36271936 AGTTTACATA
* *
36271946 TTTTTTAATATTTTTTTA-
1 TTTTTTAACAATTTTTTAT
36271964 TTTTTT-ACAATTTTTTAT
1 TTTTTTAACAATTTTTTAT
**
36271982 TTTTTTAACAATTCTAATAT
1 TTTTTTAACAATT-TTTTAT
36272002 TTTTTTAA
1 TTTTTTAA
36272010 TTTATAATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
17 9 0.23
18 12 0.31
19 6 0.15
20 12 0.31
ACGTcount: A:0.27, C:0.05, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTTAACAATTTTTTAT
Found at i:36272044 original size:20 final size:19
Alignment explanation
Indices: 36271928--36272043 Score: 66
Period size: 19 Copynumber: 6.2 Consensus size: 19
36271918 GTTTTTTTAA
*
36271928 TTTTTAT-AAGTTTACATAT
1 TTTTTATCAATTTTA-ATAT
**
36271947 TTTTTA--ATATTTTTTTAT
1 TTTTTATCA-ATTTTAATAT
*
36271965 TTTTTA-CAATTTT-TTATT
1 TTTTTATCAATTTTAATA-T
* *
36271983 TTTTTAACAATTCTAATAT
1 TTTTTATCAATTTTAATAT
*
36272002 TTTTT-T-AATTTATAATAAG
1 TTTTTATCAATTT-TAAT-AT
*
36272021 TTTATATCAATTTTAATAT
1 TTTTTATCAATTTTAATAT
36272040 TTTT
1 TTTT
36272044 AATATTTTTT
Statistics
Matches: 77, Mismatches: 11, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
17 7 0.09
18 26 0.34
19 32 0.42
20 7 0.09
21 5 0.06
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTTTATCAATTTTAATAT
Found at i:36272062 original size:18 final size:19
Alignment explanation
Indices: 36272031--36272070 Score: 64
Period size: 18 Copynumber: 2.1 Consensus size: 19
36272021 TTTATATCAA
36272031 TTTTAATATTTTTAATATTT
1 TTTTAATA-TTTTAATATTT
36272051 TTTTAATA-TTTAATATTT
1 TTTTAATATTTTAATATTT
36272069 TT
1 TT
36272071 ATAAAAAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 12 0.60
20 8 0.40
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTTAATATTTTAATATTT
Found at i:36272070 original size:83 final size:82
Alignment explanation
Indices: 36271919--36272071 Score: 193
Period size: 83 Copynumber: 1.9 Consensus size: 82
36271909 TCAATTCAAG
* * * * * *
36271919 TTTTTTTAATTTTTATAAGTTTACATATTTTTTAATATTTTTTTATTTTTTACAATTTTTTATTT
1 TTTTTTTAATTTTAATAAGTTTACATATATTTTAATATTTTTATATTTTTTACAATATTTAATAT
36271984 TTTTAACAATTCTAATA
66 TTTTAACAATTCTAATA
* *
36272001 TTTTTTTAATTTATAATAAGTTTATATCA-ATTTTAATATTTTTAATATTTTTT-TAATATTTAA
1 TTTTTTTAATTT-TAATAAGTTTACAT-ATATTTTAATATTTTT-ATATTTTTTACAATATTTAA
36272064 TATTTTTA
63 TATTTTTA
36272072 TAAAAAATCT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
82 12 0.20
83 39 0.65
84 9 0.15
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (82 bp):
TTTTTTTAATTTTAATAAGTTTACATATATTTTAATATTTTTATATTTTTTACAATATTTAATAT
TTTTAACAATTCTAATA
Found at i:36272072 original size:47 final size:45
Alignment explanation
Indices: 36271928--36272073 Score: 127
Period size: 47 Copynumber: 3.2 Consensus size: 45
36271918 GTTTTTTTAA
* *
36271928 TTTT-TATAAGTTTACATATTTTTTAATATTTTTTTATTTTTTACA-AT
1 TTTTATATAATTTTA-ATA-TTTTTAATATTTTTTTA-ATTTTA-ATAT
** * * * *
36271975 TTTT-TATTTTTTTAACAATTCTAATATTTTTTTAATTTATAATAA
1 TTTTATATAATTTTAATATTTTTAATATTTTTTTAATTT-TAATAT
*
36272020 GTTTATATCAATTTTAATATTTTTAATATTTTTTTAATATTTAATAT
1 TTTTATAT-AATTTTAATATTTTTAATATTTTTTTAAT-TTTAATAT
36272067 TTTTATA
1 TTTTATA
36272074 AAAAATCTTA
Statistics
Matches: 78, Mismatches: 16, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
44 4 0.05
45 21 0.27
46 5 0.06
47 46 0.59
48 2 0.03
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (45 bp):
TTTTATATAATTTTAATATTTTTAATATTTTTTTAATTTTAATAT
Found at i:36272086 original size:83 final size:81
Alignment explanation
Indices: 36271919--36272090 Score: 188
Period size: 83 Copynumber: 2.1 Consensus size: 81
36271909 TCAATTCAAG
* * * **
36271919 TTTTTTTAATTTTTATAAGTTTACATATTTTTTAATATTTTTTTATTTTTTACAATTTTTTATTT
1 TTTTTTTAATTTTAATAAGTTTACATATATTTTAATATTTTTATATTTTTTACAATTTAATATTT
* * *
36271984 TTTTAACAATTCTAATA
66 TTATAAAAAATCT-ATA
*
36272001 TTTTTTTAATTTATAATAAGTTTATATCA-ATTTTAATATTTTTAATATTTTTTTA-ATATTTAA
1 TTTTTTTAATTT-TAATAAGTTTACAT-ATATTTTAATATTTTT-ATA-TTTTTTACA-ATTTAA
36272064 TATTTTTATAAAAAATCT-TA
61 TATTTTTATAAAAAATCTATA
36272084 TTTTTTT
1 TTTTTTT
36272091 TATAATTTTT
Statistics
Matches: 76, Mismatches: 9, Indels: 9
0.81 0.10 0.10
Matches are distributed among these distances:
82 12 0.16
83 34 0.45
84 4 0.05
85 26 0.34
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.64
Consensus pattern (81 bp):
TTTTTTTAATTTTAATAAGTTTACATATATTTTAATATTTTTATATTTTTTACAATTTAATATTT
TTATAAAAAATCTATA
Found at i:36272090 original size:47 final size:46
Alignment explanation
Indices: 36271996--36272117 Score: 111
Period size: 47 Copynumber: 2.6 Consensus size: 46
36271986 TTAACAATTC
** ** *
36271996 TAATATTTTTTTAATTTATAATAAGTTTATATCAATTTTAATATTTT
1 TAATATTTTTTTAATTT-TAATATTTTTATAAAAATCTTAATATTTT
*
36272043 TAATATTTTTTTAATATTTAATATTTTTATAAAAAATCTT-ATTTTTT
1 TAATATTTTTTTAAT-TTTAATATTTTTAT-AAAAATCTTAATATTTT
* * * *
36272090 TTATAATTTTTCTGATTTTTATATTTTT
1 TAAT-ATTTTTTTAATTTTAATATTTTT
36272118 GTGATATCAT
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
47 45 0.73
48 17 0.27
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (46 bp):
TAATATTTTTTTAATTTTAATATTTTTATAAAAATCTTAATATTTT
Found at i:36272115 original size:17 final size:18
Alignment explanation
Indices: 36272087--36272122 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
36272077 AATCTTATTT
36272087 TTTTTATAATTTTTCTGA
1 TTTTTATAATTTTTCTGA
*
36272105 TTTTTAT-ATTTTTGTGA
1 TTTTTATAATTTTTCTGA
36272122 T
1 T
36272123 ATCATTTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.19, C:0.03, G:0.08, T:0.69
Consensus pattern (18 bp):
TTTTTATAATTTTTCTGA
Found at i:36276079 original size:18 final size:18
Alignment explanation
Indices: 36276039--36276076 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
36276029 ATGATATTGG
*
36276039 TTATTATAAAATATTTTC
1 TTATTATAAAATAATTTC
36276057 TTATTATAAAATAAATTTC
1 TTATTATAAAAT-AATTTC
36276076 T
1 T
36276077 ATTGTTAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 12 0.67
19 6 0.33
ACGTcount: A:0.42, C:0.05, G:0.00, T:0.53
Consensus pattern (18 bp):
TTATTATAAAATAATTTC
Found at i:36282539 original size:51 final size:50
Alignment explanation
Indices: 36282477--36282574 Score: 133
Period size: 50 Copynumber: 1.9 Consensus size: 50
36282467 CCTCTACCCG
* * *
36282477 TATGATCCTTATTTTGTAATCAGTGAGTTACACGGCCTGGACACATGCCCA
1 TATGATCCTTA-TCTATAATCAGTAAGTTACACGGCCTGGACACATGCCCA
* * *
36282528 TATGATGCTTATCTATAATCAGTAATTTACACGGCCTTGACACATGC
1 TATGATCCTTATCTATAATCAGTAAGTTACACGGCCTGGACACATGC
36282575 TCTTGTCCCT
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
50 31 0.76
51 10 0.24
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (50 bp):
TATGATCCTTATCTATAATCAGTAAGTTACACGGCCTGGACACATGCCCA
Found at i:36283264 original size:24 final size:24
Alignment explanation
Indices: 36283237--36283287 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 24
36283227 TAAGAAGAAT
*
36283237 AAAAATTAAAAAGA-AAAAGAAAG
1 AAAAAATAAAAAGAGAAAAGAAAG
* *
36283260 AAAAAATGAAAAGAGACAAGAAAG
1 AAAAAATAAAAAGAGAAAAGAAAG
36283284 AAAA
1 AAAA
36283288 TGTTTAATTC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
23 12 0.50
24 12 0.50
ACGTcount: A:0.76, C:0.02, G:0.16, T:0.06
Consensus pattern (24 bp):
AAAAAATAAAAAGAGAAAAGAAAG
Found at i:36286123 original size:26 final size:26
Alignment explanation
Indices: 36286043--36286123 Score: 62
Period size: 26 Copynumber: 3.2 Consensus size: 26
36286033 TTCGATCACG
36286043 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
* * ***
36286069 CGTGTA-T-CGGATGAAAATGG-TCAC-A
1 TGTGTAGTAC-TATGTGCA-GGCT-ACTA
36286094 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTATGTGCAGGCTACTA
36286120 TGTG
1 TGTG
36286124 AATCGGGTAT
Statistics
Matches: 38, Mismatches: 10, Indels: 14
0.61 0.16 0.23
Matches are distributed among these distances:
24 1 0.03
25 16 0.42
26 20 0.53
27 1 0.03
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (26 bp):
TGTGTAGTACTATGTGCAGGCTACTA
Found at i:36286129 original size:51 final size:51
Alignment explanation
Indices: 36285935--36286123 Score: 213
Period size: 51 Copynumber: 3.7 Consensus size: 51
36285925 GAAGTTGCTA
* ** * *
36285935 GGTCACGTGTGTAGTACTATGTGCAGGCTACTAAATGTACCGAAATG-ATA-
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCG-GATGAAAAT
* * ***
36285985 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT-AGCTT
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATGAAAAT
* * * *
36286035 CGATCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGATGAAAAT
1 -GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATGAAAAT
36286087 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
1 GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
36286124 AATCGGGTAT
Statistics
Matches: 114, Mismatches: 21, Indels: 7
0.80 0.15 0.05
Matches are distributed among these distances:
49 2 0.02
50 37 0.32
51 73 0.64
52 2 0.02
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (51 bp):
GGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCGGATGAAAAT
Found at i:36288567 original size:26 final size:25
Alignment explanation
Indices: 36288493--36288569 Score: 75
Period size: 26 Copynumber: 3.0 Consensus size: 25
36288483 AATTTTTATA
36288493 AAAATTATATATTTAATTA-AAATTT
1 AAAA-TATATATTTAATTATAAATTT
* * * *
36288518 TAAATATATTTTTTATTATTAATTT
1 AAAATATATATTTAATTATAAATTT
* *
36288543 AAAATAATAAATTTGATTATAAATTT
1 AAAAT-ATATATTTAATTATAAATTT
36288569 A
1 A
36288570 TTGAGACGGA
Statistics
Matches: 41, Mismatches: 9, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
24 12 0.29
25 12 0.29
26 17 0.41
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (25 bp):
AAAATATATATTTAATTATAAATTT
Found at i:36289183 original size:24 final size:24
Alignment explanation
Indices: 36289156--36289203 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
36289146 GCTCACGAAC
* *
36289156 AAGCTCATTTCTTGGCTCGTTTAT
1 AAGCTCATTTATTGACTCGTTTAT
**
36289180 AAGCTTGTTTATTGACTCGTTTAT
1 AAGCTCATTTATTGACTCGTTTAT
36289204 TTATTAATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.19, C:0.17, G:0.17, T:0.48
Consensus pattern (24 bp):
AAGCTCATTTATTGACTCGTTTAT
Found at i:36289484 original size:23 final size:23
Alignment explanation
Indices: 36289426--36289495 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
36289416 TGATTAACAT
*
36289426 TGTTCGTGAACATGCTCAATTATA
1 TGTTCGTGAACATGCTCGATTA-A
* * *
36289450 TGTTCATGAACATGTTCGTTTAA
1 TGTTCGTGAACATGCTCGATTAA
*
36289473 TGTTCGTAAACATGCTCGATTAA
1 TGTTCGTGAACATGCTCGATTAA
36289496 GTTAAATGAA
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
23 20 0.53
24 18 0.47
ACGTcount: A:0.29, C:0.16, G:0.17, T:0.39
Consensus pattern (23 bp):
TGTTCGTGAACATGCTCGATTAA
Found at i:36295944 original size:34 final size:35
Alignment explanation
Indices: 36295889--36295955 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
36295879 CAAACACCAG
*
36295889 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
* *
36295924 AAAACATTTTCCCG-AAATCATTTTACGGAAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAAA
36295956 TATTTTACTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.45, C:0.15, G:0.09, T:0.31
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:36298400 original size:21 final size:20
Alignment explanation
Indices: 36298362--36298436 Score: 66
Period size: 20 Copynumber: 3.8 Consensus size: 20
36298352 AAATAATAAT
* *
36298362 TATAAAAATATATATACATA
1 TATAAAAATAAAAATACATA
36298382 TATAAAAATAAAAATTACATA
1 TATAAAAATAAAAA-TACATA
**
36298403 TA-AAATTTAAAAA-A-ATA
1 TATAAAAATAAAAATACATA
*
36298420 TATAAATAAAAAAAATA
1 TATAAA-AATAAAAATA
36298437 GTAATTACAT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
17 5 0.11
18 4 0.09
19 5 0.11
20 22 0.50
21 8 0.18
ACGTcount: A:0.68, C:0.03, G:0.00, T:0.29
Consensus pattern (20 bp):
TATAAAAATAAAAATACATA
Found at i:36298414 original size:46 final size:47
Alignment explanation
Indices: 36298354--36298446 Score: 118
Period size: 45 Copynumber: 2.0 Consensus size: 47
36298344 TCAGTTTAAA
* * *
36298354 ATAATAATTATAAAAATATATATACATATATAAAAATAAAAATTACAT
1 ATAATAATTATAAAAAAATATATAAATA-AAAAAAATAAAAATTACAT
**
36298402 ATAA-AATT-TAAAAAAATATATAAATAAAAAAAATAGTAATTACAT
1 ATAATAATTATAAAAAAATATATAAATAAAAAAAATAAAAATTACAT
36298447 TATTAGAATT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
45 16 0.40
46 16 0.40
47 4 0.10
48 4 0.10
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.31
Consensus pattern (47 bp):
ATAATAATTATAAAAAAATATATAAATAAAAAAAATAAAAATTACAT
Found at i:36300084 original size:132 final size:132
Alignment explanation
Indices: 36299847--36300408 Score: 899
Period size: 132 Copynumber: 4.3 Consensus size: 132
36299837 CACTGCAACT
* ** * *
36299847 TTAGGGAGATAAGATTTGGTGGCTTAAATCTACTTCCCACTGTCTTGGAAAGATAAGATTCGCCG
1 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
* * * *
36299912 ACTTCGATCTGCTCCGCTACTGCTTAGGGAGATAATATCTATAATCTTCAACCTTCTCCGCTACT
66 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTACT
36299977 GC
131 GC
*
36299979 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAAATAAGATTCGCCG
1 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
*
36300044 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCCTCTCCGCTACT
66 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTACT
36300109 GC
131 GC
36300111 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
1 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
* * * * * *
36300176 TCTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATCTACACTCTTCAACCTTCTCCACTGCT
66 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTACT
*
36300241 AC
131 GC
* * * *
36300243 TCAGGGAGACAAGACTTGGTGGCTTAAAACTGCTTCCCACTATCTTGGAAAGATAAGATTCACCG
1 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
*
36300308 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTGCT
66 TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTACT
36300373 GC
131 GC
* *
36300375 TCAAGGAGACAAGGCTTGGTGGCTTAAATCTGCT
1 TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCT
36300409 GTCTTATTCA
Statistics
Matches: 397, Mismatches: 33, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
132 397 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.30
Consensus pattern (132 bp):
TTAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTCGCCG
TCTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTATAATCTTCAACCTTCTCCGCTACT
GC
Found at i:36300342 original size:44 final size:44
Alignment explanation
Indices: 36299897--36300345 Score: 158
Period size: 44 Copynumber: 10.2 Consensus size: 44
36299887 TGTCTTGGAA
* * *
36299897 AGATAAGATTCGCCGACTTCGATCTGCTCCGCTACTGCTTAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* **** * * *
36299941 AGATAATA-TCTATAATCTTCAACCTTCTCCGCTACTGCTTAGGG
1 AGATAAGATTC-GCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * ** * * *
36299985 AGACAAGGCTT-GGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTCGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * *
36300029 AAATAAGATTCGCCGTCTTCGATCTACTCCACTACTGCTTAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
**** * *
36300073 AGATAAGA-TCTATAATCTTCAACCCT-CTCCGCTACTGCTTAGGG
1 AGATAAGATTC-GCCGTCTTCAA-TCTGCTCCACTACTGCTTAGGG
* * ** * * *
36300117 AGACAAGGCTT-GGTGGCTTAAATCTGCTTCCCACTA-T-CTT-GGAA
1 AGATAA-GATTCGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* *
36300161 AGATAAGATTCGCCGTCTTCGATCTGCTCCACTACTACTTAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* * * * * *
36300205 AGATAAGATCTAC-AC-TCTTCAACCTTCTCCACTGCTACTCAGGG
1 AGATAAGAT-T-CGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
* ** * * * *
36300249 AGACAAGACTT-GGTGGCTTAAAACTGCTTCCCACTA-T-CTT-GGAA
1 AGATAAGA-TTCGCCGTCTTCAATCTGC-T-CCACTACTGCTTAGG-G
* * *
36300293 AGATAAGATTCACCGTCTTCGATCTACTCCACTACTGCTTAGGG
1 AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
36300337 AGATAAGAT
1 AGATAAGAT
36300346 CTATAATCTT
Statistics
Matches: 286, Mismatches: 85, Indels: 68
0.65 0.19 0.15
Matches are distributed among these distances:
42 18 0.06
43 26 0.09
44 206 0.72
45 18 0.06
46 18 0.06
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.29
Consensus pattern (44 bp):
AGATAAGATTCGCCGTCTTCAATCTGCTCCACTACTGCTTAGGG
Found at i:36311721 original size:13 final size:12
Alignment explanation
Indices: 36311698--36311735 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
36311688 CATTAATGGC
36311698 ATAAA-AAATAA
1 ATAAACAAATAA
36311709 TATAAACAAATAA
1 -ATAAACAAATAA
36311722 ATAAACGAAATAA
1 ATAAAC-AAATAA
36311735 A
1 A
36311736 AACAATAATC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 11 0.46
13 13 0.54
ACGTcount: A:0.74, C:0.05, G:0.03, T:0.18
Consensus pattern (12 bp):
ATAAACAAATAA
Found at i:36312141 original size:21 final size:20
Alignment explanation
Indices: 36312103--36312145 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
36312093 AAATAATAAT
* *
36312103 TATAAAAATATATATACATA
1 TATAAAAATAAAAATACATA
36312123 TATAAAAATAAAAATTACATA
1 TATAAAAATAAAAA-TACATA
36312144 TA
1 TA
36312146 AAAGTTACAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 12 0.60
21 8 0.40
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
TATAAAAATAAAAATACATA
Found at i:36317725 original size:10 final size:10
Alignment explanation
Indices: 36317710--36317734 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
36317700 TTTGTTAAAA
36317710 ATTTATATGT
1 ATTTATATGT
36317720 ATTTATATGT
1 ATTTATATGT
36317730 ATTTA
1 ATTTA
36317735 ATTATAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.32, C:0.00, G:0.08, T:0.60
Consensus pattern (10 bp):
ATTTATATGT
Found at i:36320982 original size:16 final size:17
Alignment explanation
Indices: 36320961--36320999 Score: 62
Period size: 16 Copynumber: 2.3 Consensus size: 17
36320951 TGTAATTAAC
36320961 TTTTTATATA-TAATAT
1 TTTTTATATATTAATAT
36320977 TTTTTATATATTAATAT
1 TTTTTATATATTAATAT
36320994 TATTTT
1 T-TTTT
36321000 CAACAAAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 10 0.48
17 7 0.33
18 4 0.19
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (17 bp):
TTTTTATATATTAATAT
Found at i:36322581 original size:21 final size:22
Alignment explanation
Indices: 36322535--36322578 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
36322525 TTATTTTTAT
*
36322535 ATTTTATAATAAAAATTAAAAA
1 ATTTTATAATAAAAAATAAAAA
36322557 ATTTTAT-ATAAAAAAATAAAAA
1 ATTTTATAAT-AAAAAATAAAAA
36322579 TTTATAGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 2 0.10
22 18 0.90
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
ATTTTATAATAAAAAATAAAAA
Found at i:36324650 original size:40 final size:40
Alignment explanation
Indices: 36324606--36324717 Score: 136
Period size: 39 Copynumber: 2.8 Consensus size: 40
36324596 CGTTTGGACA
* * * *
36324606 AAAAATGCCTCTAAAAATCGAGCATTAGCGGTGCATTTAG
1 AAAAACGCCACTAAAAATAGAGCATTAGCGGCGCATTTAG
* * * *
36324646 AAAAACGCCACT-AAAATAAAGCATTAGCAGCGCTTTTTG
1 AAAAACGCCACTAAAAATAGAGCATTAGCGGCGCATTTAG
*
36324685 AGAAACGCCACTAAAAATAGAGCATTAGCGGCG
1 AAAAACGCCACTAAAAATAGAGCATTAGCGGCG
36324718 TTTATAAGGA
Statistics
Matches: 60, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
39 32 0.53
40 28 0.47
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.21
Consensus pattern (40 bp):
AAAAACGCCACTAAAAATAGAGCATTAGCGGCGCATTTAG
Found at i:36324871 original size:41 final size:41
Alignment explanation
Indices: 36324817--36325099 Score: 216
Period size: 41 Copynumber: 6.9 Consensus size: 41
36324807 TGCTGGGGGA
* * * *
36324817 TTTAGCGACGTTTTTGAAGAAGAGCCACTAATGATCTAGGC
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTAGGC
* * * *
36324858 TTTAACGGTGTTTTTGAAGATGCGCCGCTAATGATCT-GAGC
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTAG-GC
* **
36324899 TTTAGCGGCGATTTTGAAGAAGCTACGCTAATGCTCTAGGC
1 TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTAGGC
* *
36324940 TTTAGCGGCATTTTTTAGAA-AA-CGCCGCTAATTCTCTAGGC
1 TTTAGCGGC-GTTTTT-GAAGAAGCGCCGCTAATGCTCTAGGC
* * * *
36324981 TTTAGCGGCATTTTTGAAGAAAGCGCCACTATTGCTCTGGGC
1 TTTAGCGGCGTTTTTGAAG-AAGCGCCGCTAATGCTCTAGGC
** * ** ** * *
36325023 TTTAAAGGCGTTTTT-TAGAAAGTTCCAATAATTCTCTGGGC
1 TTTAGCGGCGTTTTTGAAG-AAGCGCCGCTAATGCTCTAGGC
* * *
36325064 TTTAGCGGTGTTTTT-TAGAAAGTGCCGCTAATGCTC
1 TTTAGCGGCGTTTTTGAAG-AAGCGCCGCTAATGCTC
36325100 AGGGGCTTTT
Statistics
Matches: 196, Mismatches: 39, Indels: 14
0.79 0.16 0.06
Matches are distributed among these distances:
39 3 0.02
40 6 0.03
41 150 0.77
42 34 0.17
43 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTAGGC
Found at i:36325055 original size:83 final size:82
Alignment explanation
Indices: 36324897--36325071 Score: 199
Period size: 83 Copynumber: 2.1 Consensus size: 82
36324887 AATGATCTGA
* * **
36324897 GCTTTAGCGGCGATTTTGAAGAAGCTACGCTAATGCTCTAGGCTTTAGCGGCATTTTTTAGAAAA
1 GCTTTAGCGGCGATTTTGAAGAAGCGACACTAATGCTCTAGGCTTTAAAGGCATTTTTTAGAAAA
**
36324962 CGCCGCTAATTCTCTAG
66 CGCCAATAATTCTCTAG
* * * *
36324979 GCTTTAGCGGC-ATTTTTGAAGAAAGCGCCACTATTGCTCTGGGCTTTAAAGGCGTTTTTTAGAA
1 GCTTTAGCGGCGA-TTTTGAAG-AAGCGACACTAATGCTCTAGGCTTTAAAGGCATTTTTTAGAA
*** *
36325043 AGTTCCAATAATTCTCTGG
64 AACGCCAATAATTCTCTAG
36325062 GCTTTAGCGG
1 GCTTTAGCGG
36325072 TGTTTTTTAG
Statistics
Matches: 77, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 1 0.01
82 19 0.25
83 57 0.74
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.33
Consensus pattern (82 bp):
GCTTTAGCGGCGATTTTGAAGAAGCGACACTAATGCTCTAGGCTTTAAAGGCATTTTTTAGAAAA
CGCCAATAATTCTCTAG
Found at i:36326801 original size:102 final size:101
Alignment explanation
Indices: 36326625--36326960 Score: 435
Period size: 102 Copynumber: 3.3 Consensus size: 101
36326615 TATCGATGAA
* *
36326625 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGCCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
*
36326690 TAAGTGAAGGCTACAATGTGTACTGAGAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACTGA-AAGCTTTGGT
* *
36326727 CACGTGTGTAATACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
* *
36326792 TAAGTGAAGGCTATTATGTGTACCGAAAAGCTTTGGT
66 TAAGTGAAGGCTACTATGTGTACTG-AAAGCTTTGGT
* * * * * *
36326829 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGGA-CCATAAA-ACTTGATCACGTGTGTAGTA
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATA-ATGGTCACATGTGTAGTA
* * * * *
36326892 CTATGTGAAGGCTACTACGTGAACTGTAAAAC-TTGAT
65 CTAAGTGAAGGCTACTATGTGTACTG-AAAGCTTTGGT
**
36326929 CACGTGTGTAGTACTAAGTGAAGGCTACTACG
1 CACGTGTGTAGTACTGTGTGAAGGCTACTACG
36326961 CGTATCGAAT
Statistics
Matches: 206, Mismatches: 26, Indels: 6
0.87 0.11 0.03
Matches are distributed among these distances:
100 33 0.16
101 46 0.22
102 126 0.61
103 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (101 bp):
CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATAATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACTATGTGTACTGAAAGCTTTGGT
Found at i:36326899 original size:50 final size:50
Alignment explanation
Indices: 36326625--36326960 Score: 302
Period size: 51 Copynumber: 6.6 Consensus size: 50
36326615 TATCGATGAA
* * * *
36326625 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATA-ATGGC
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA-CCATAAA-ACTTGGT
* * * * *
36326676 CACATGTGTAGTACTAAGTGAAGGCTACAATGTGTA-C-TGAGAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCAT-A-AAAC-TTGGT
* * * * ***
36326727 CACGTGTGTAATACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTA-CCATAAAACTTGGT
* * * * *
36326778 CACATGTGTAGTACTAAGTGAAGGCTATTATGTGTACCGA-AAAGCTTTGGT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACC-ATAAAAC-TTGGT
* * * *
36326829 CACGTGTGTAGTATTGTGTGAAGGCTACTACGTGGACCATAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCATAAAACTTGGT
* ** *
36326879 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGAACTGTAAAACTTGAT
1 CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCATAAAACTTGGT
*
36326929 CACGTGTGTAGTACTAAGTGAAGGCTACTACG
1 CACGTGTGTAGTACTATGTGAAGGCTACTACG
36326961 CGTATCGAAT
Statistics
Matches: 229, Mismatches: 46, Indels: 21
0.77 0.16 0.07
Matches are distributed among these distances:
48 1 0.00
49 1 0.00
50 87 0.38
51 136 0.59
52 2 0.01
53 1 0.00
54 1 0.00
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.29
Consensus pattern (50 bp):
CACGTGTGTAGTACTATGTGAAGGCTACTACGTGTACCATAAAACTTGGT
Found at i:36331328 original size:51 final size:50
Alignment explanation
Indices: 36331268--36331656 Score: 359
Period size: 51 Copynumber: 7.7 Consensus size: 50
36331258 GATGAACACG
* *
36331268 TGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAT-TTGGTCACA
* * * * * *
36331319 TGTGTAGTACTAAGTGAAGGCTACAATGTGTATCGAGAAGTTTTGGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAA-ATTTGGTCACA
* * *
36331370 TGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAT-TTGGTCACA
* * * * * * * * * *
36331421 TGTGTAGTTCTAAGTGAAAGCTACAATGTGTACCGAGAAGCTTTTGTCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAA-ATTTGGTCACA
* * * *
36331472 TGTATAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAAT-TTGGTCACA
* * * * * *
36331523 TGTGTAGTAGTAAGTGAAGGCTGCTAAGTGTA-CCAAAAAGCTTTGGTCACA
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAA--TTTGGTCACA
* * * * * *
36331574 TGTATAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACG
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGAT-AAATTTGGTCACA
36331624 TGTGTAGTACTATGTGAAGGCTACTACGTGTAT
1 TGTGTAGTACTATGTGAAGGCTACTACGTGTAT
36331657 GGAATGATAA
Statistics
Matches: 262, Mismatches: 68, Indels: 17
0.76 0.20 0.05
Matches are distributed among these distances:
50 44 0.17
51 211 0.81
52 7 0.03
ACGTcount: A:0.29, C:0.14, G:0.26, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTATGTGAAGGCTACTACGTGTATCGATAAATTTGGTCACA
Found at i:36331444 original size:102 final size:102
Alignment explanation
Indices: 36331264--36331647 Score: 540
Period size: 102 Copynumber: 3.8 Consensus size: 102
36331254 TATCGATGAA
* * *
36331264 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGTATCGATAAATAATGGTCACATGTGTAGTAC
1 CACGTGTATAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
*
36331329 TAAGTGAAGGCTACAATGTGTATCGAGAAGTTTTGGT
66 TAAGTGAAGGCTACAATGTGTACCGAGAAGTTTTGGT
* *
36331366 CACGTGTGTAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTTC
1 CACGTGTATAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
*
36331431 TAAGTGAAAGCTACAATGTGTACCGAGAAGCTTTT-GT
66 TAAGTGAAGGCTACAATGTGTACCGAGAAG-TTTTGGT
*
36331468 CACGTGTATAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAG
1 CACGTGTATAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
* * * *
36331533 TAAGTGAAGGCTGCTAA-GTGTACCAAAAAGCTTTGGT
66 TAAGTGAAGGCTAC-AATGTGTACCGAGAAGTTTTGGT
* * * *** * *
36331570 CACATGTATAGTACTATGTGAAGGCTACTACGTGAACCG-TAAAACTTGATCACGTGTGTAGTAC
1 CACGTGTATAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
*
36331634 TATGTGAAGGCTAC
66 TAAGTGAAGGCTAC
36331648 TACGTGTATG
Statistics
Matches: 255, Mismatches: 24, Indels: 7
0.89 0.08 0.02
Matches are distributed among these distances:
101 34 0.13
102 215 0.84
103 6 0.02
ACGTcount: A:0.29, C:0.15, G:0.26, T:0.30
Consensus pattern (102 bp):
CACGTGTATAGTACTGTGTGAAGGCTACTACGTGAATCGATAAATGATGGTCACATGTGTAGTAC
TAAGTGAAGGCTACAATGTGTACCGAGAAGTTTTGGT
Found at i:36333214 original size:14 final size:14
Alignment explanation
Indices: 36333197--36333245 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
36333187 GCATGGTTTT
36333197 GGGTTTTGGATTTA
1 GGGTTTTGGATTTA
* *
36333211 GGGTTTAGGGTTTA
1 GGGTTTTGGATTTA
* *
36333225 GTGTTATGGATTTTA
1 GGGTTTTGGA-TTTA
36333240 GGGTTT
1 GGGTTT
36333246 AATTACTTTT
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
14 18 0.69
15 8 0.31
ACGTcount: A:0.14, C:0.00, G:0.37, T:0.49
Consensus pattern (14 bp):
GGGTTTTGGATTTA
Found at i:36333223 original size:28 final size:29
Alignment explanation
Indices: 36333191--36333246 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 29
36333181 TACAATGCAT
* *
36333191 GGTTTTGGGTTTTGGA-TTTAGGGTTTAG
1 GGTTTAGGGTTATGGATTTTAGGGTTTAG
*
36333219 GGTTTAGTGTTATGGATTTTAGGGTTTA
1 GGTTTAGGGTTATGGATTTTAGGGTTTA
36333247 ATTACTTTTG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
28 13 0.54
29 11 0.46
ACGTcount: A:0.14, C:0.00, G:0.36, T:0.50
Consensus pattern (29 bp):
GGTTTAGGGTTATGGATTTTAGGGTTTAG
Found at i:36334744 original size:31 final size:31
Alignment explanation
Indices: 36334706--36334785 Score: 142
Period size: 31 Copynumber: 2.6 Consensus size: 31
36334696 TTGAATTTTA
*
36334706 ATTGGTTTTTGCAGCTAAGATGGTACCTTCT
1 ATTGGTTTTTGCTGCTAAGATGGTACCTTCT
36334737 ATTGGTTTTTGCTGCTAAGATGGTACCTTCT
1 ATTGGTTTTTGCTGCTAAGATGGTACCTTCT
*
36334768 ATTGATTTTTGCTGCTAA
1 ATTGGTTTTTGCTGCTAA
36334786 ATCAACCATG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.19, C:0.15, G:0.21, T:0.45
Consensus pattern (31 bp):
ATTGGTTTTTGCTGCTAAGATGGTACCTTCT
Found at i:36338291 original size:43 final size:43
Alignment explanation
Indices: 36338237--36338344 Score: 180
Period size: 43 Copynumber: 2.5 Consensus size: 43
36338227 GACCTTTAAA
* *
36338237 GGCGTTTGTGGGTAAAGCGTCGCTAAAGATAATGTTCTTTAGC
1 GGCGTTTGTGGGTAAAGCGCCGATAAAGATAATGTTCTTTAGC
*
36338280 GGCGTTTGTGGGTAAAGCGCCGATAAAGATCATGTTCTTTAGC
1 GGCGTTTGTGGGTAAAGCGCCGATAAAGATAATGTTCTTTAGC
*
36338323 GGCGTTTGTGGGTAAAACGCCG
1 GGCGTTTGTGGGTAAAGCGCCG
36338345 CAAAAGTTAG
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 61 1.00
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.30
Consensus pattern (43 bp):
GGCGTTTGTGGGTAAAGCGCCGATAAAGATAATGTTCTTTAGC
Found at i:36345542 original size:28 final size:29
Alignment explanation
Indices: 36345499--36345573 Score: 91
Period size: 28 Copynumber: 2.6 Consensus size: 29
36345489 CGATAGATAG
36345499 AAAAAAATGATA-AAAATAAATAAAA-TAT
1 AAAAAAAT-ATAGAAAATAAATAAAATTAT
**
36345527 AAAAAAATATAGAAAATTTATAAAATTTAT
1 AAAAAAATATAGAAAATAAATAAAA-TTAT
*
36345557 AAAAATATATAGAAAAT
1 AAAAAAATATAGAAAAT
36345574 TTATTTTTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
27 3 0.07
28 19 0.46
30 19 0.46
ACGTcount: A:0.69, C:0.00, G:0.04, T:0.27
Consensus pattern (29 bp):
AAAAAAATATAGAAAATAAATAAAATTAT
Found at i:36345548 original size:11 final size:10
Alignment explanation
Indices: 36345524--36345577 Score: 56
Period size: 11 Copynumber: 5.3 Consensus size: 10
36345514 ATAAATAAAA
**
36345524 TATAAAAAAA
1 TATAAAAATT
36345534 TATAGAAAATT
1 TATA-AAAATT
36345545 TAT-AAAATT
1 TATAAAAATT
*
36345554 TATAAAAATA
1 TATAAAAATT
36345564 TATAGAAAATT
1 TATA-AAAATT
36345575 TAT
1 TAT
36345578 TTTTAAAACA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
9 9 0.24
10 13 0.35
11 15 0.41
ACGTcount: A:0.61, C:0.00, G:0.04, T:0.35
Consensus pattern (10 bp):
TATAAAAATT
Found at i:36345558 original size:30 final size:28
Alignment explanation
Indices: 36345499--36345577 Score: 97
Period size: 30 Copynumber: 2.8 Consensus size: 28
36345489 CGATAGATAG
**
36345499 AAAAAAATGATA-AAAATAAATAAAATAT
1 AAAAAAAT-ATAGAAAATTTATAAAATAT
36345527 AAAAAAATATAGAAAATTTATAAAATTTAT
1 AAAAAAATATAGAAAATTTATAAAA--TAT
*
36345557 AAAAATATATAGAAAATTTAT
1 AAAAAAATATAGAAAATTTAT
36345578 TTTTAAAACA
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
27 3 0.07
28 19 0.42
30 23 0.51
ACGTcount: A:0.67, C:0.00, G:0.04, T:0.29
Consensus pattern (28 bp):
AAAAAAATATAGAAAATTTATAAAATAT
Found at i:36345567 original size:10 final size:10
Alignment explanation
Indices: 36345508--36345573 Score: 59
Period size: 9 Copynumber: 6.8 Consensus size: 10
36345498 GAAAAAAATG
*
36345508 ATAAAAATAA
1 ATAAAAATAT
36345518 AT-AAAATAT
1 ATAAAAATAT
36345527 A-AAAAA-AT
1 ATAAAAATAT
*
36345535 ATAGAAAATTT
1 ATA-AAAATAT
*
36345546 AT-AAAATTT
1 ATAAAAATAT
36345555 ATAAAAATAT
1 ATAAAAATAT
36345565 ATAGAAAAT
1 ATA-AAAAT
36345574 TTATTTTTAA
Statistics
Matches: 47, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
8 3 0.06
9 21 0.45
10 15 0.32
11 8 0.17
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (10 bp):
ATAAAAATAT
Found at i:36346084 original size:10 final size:10
Alignment explanation
Indices: 36346060--36346145 Score: 73
Period size: 10 Copynumber: 9.4 Consensus size: 10
36346050 TGTTGGTAAT
36346060 TATTTTTATA
1 TATTTTTATA
36346070 T-TTTTTATA
1 TATTTTTATA
36346079 TATTTTT-TA
1 TATTTTTATA
* *
36346088 AAATTTTA-A
1 TATTTTTATA
36346097 TAATTTTTA-A
1 T-ATTTTTATA
36346107 T-TTTTTATA
1 TATTTTTATA
36346116 TATTTTTA-A
1 TATTTTTATA
36346125 -A-TTTTA-A
1 TATTTTTATA
*
36346132 TATTTATATA
1 TATTTTTATA
36346142 TATT
1 TATT
36346146 ATAATTTTTA
Statistics
Matches: 63, Mismatches: 5, Indels: 16
0.75 0.06 0.19
Matches are distributed among these distances:
7 6 0.10
8 8 0.13
9 24 0.38
10 25 0.40
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (10 bp):
TATTTTTATA
Found at i:36346084 original size:19 final size:19
Alignment explanation
Indices: 36346060--36346129 Score: 90
Period size: 20 Copynumber: 3.7 Consensus size: 19
36346050 TGTTGGTAAT
*
36346060 TATTTTTATATTTTTTATA
1 TATTTTTAAATTTTTTATA
* *
36346079 TATTTTTTAAAATTTTAATA
1 TA-TTTTTAAATTTTTTATA
36346099 -ATTTTT-AATTTTTTATA
1 TATTTTTAAATTTTTTATA
36346116 TATTTTTAAATTTT
1 TATTTTTAAATTTT
36346130 AATATTTATA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
17 9 0.21
18 11 0.26
19 9 0.21
20 14 0.33
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TATTTTTAAATTTTTTATA
Found at i:36346110 original size:16 final size:16
Alignment explanation
Indices: 36346089--36346159 Score: 58
Period size: 16 Copynumber: 4.4 Consensus size: 16
36346079 TATTTTTTAA
36346089 AATTTTAATAATTTTT
1 AATTTTAATAATTTTT
*
36346105 AATTTTTTATATATTTTT
1 AA-TTTTAATA-ATTTTT
*
36346123 AAATTTTAAT-ATTTAT
1 -AATTTTAATAATTTTT
*
36346139 ATATATT-ATAATTTTT
1 A-ATTTTAATAATTTTT
36346155 -ATTTT
1 AATTTT
36346160 TTATCATATA
Statistics
Matches: 44, Mismatches: 6, Indels: 12
0.71 0.10 0.19
Matches are distributed among these distances:
14 4 0.09
15 3 0.07
16 16 0.36
17 7 0.16
18 12 0.27
19 2 0.05
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
AATTTTAATAATTTTT
Found at i:36346127 original size:26 final size:27
Alignment explanation
Indices: 36346060--36346168 Score: 93
Period size: 28 Copynumber: 4.1 Consensus size: 27
36346050 TGTTGGTAAT
* * *
36346060 TATTTTTATATTTTTTATATATTTTTTA
1 TATTTTTATAATTTTTA-ATTTTTTATA
* *
36346088 AAATTTTAATAATTTTTAATTTTTTATA
1 TATTTTT-ATAATTTTTAATTTTTTATA
*
36346116 TATTTTTA-AA-TTTTAA-TATTTATA
1 TATTTTTATAATTTTTAATTTTTTATA
*
36346140 TA-TATTATAATTTTT-ATTTTTTATCA
1 TATTTTTATAATTTTTAATTTTTTAT-A
36346166 TAT
1 TAT
36346169 ATCACAATTA
Statistics
Matches: 65, Mismatches: 10, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
23 4 0.06
24 12 0.18
25 16 0.25
26 5 0.08
27 1 0.02
28 18 0.28
29 9 0.14
ACGTcount: A:0.33, C:0.01, G:0.00, T:0.66
Consensus pattern (27 bp):
TATTTTTATAATTTTTAATTTTTTATA
Found at i:36346151 original size:24 final size:24
Alignment explanation
Indices: 36346096--36346168 Score: 67
Period size: 24 Copynumber: 2.9 Consensus size: 24
36346086 TAAAATTTTA
*
36346096 ATAATTTTTAATTTTTTATATATTT
1 ATAA-TTTTAATTTTATATATATTT
*
36346121 TTAAATTTTAATATTTATATATA-TT
1 AT-AATTTTAAT-TTTATATATATTT
* *
36346146 ATAATTTTTATTTTTTATCATAT
1 ATAATTTTAATTTTATAT-ATAT
36346169 ATCACAATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
23 6 0.15
24 11 0.28
25 11 0.28
26 11 0.28
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.64
Consensus pattern (24 bp):
ATAATTTTAATTTTATATATATTT
Found at i:36346156 original size:9 final size:9
Alignment explanation
Indices: 36346061--36346156 Score: 67
Period size: 9 Copynumber: 10.9 Consensus size: 9
36346051 GTTGGTAATT
36346061 ATTTTTATA
1 ATTTTTATA
*
36346070 TTTTTTATA
1 ATTTTTATA
*
36346079 TATTTTTTAAA
1 -A-TTTTTATA
*
36346090 ATTTTAATA
1 ATTTTTATA
36346099 ATTTTTA-A
1 ATTTTTATA
*
36346107 TTTTTTATA
1 ATTTTTATA
36346116 TATTTTTA-A
1 -ATTTTTATA
*
36346125 ATTTTAAT-
1 ATTTTTATA
*
36346133 ATTTATAT-
1 ATTTTTATA
*
36346141 A-TATTATA
1 ATTTTTATA
36346149 ATTTTTAT
1 ATTTTTAT
36346157 TTTTTATCAT
Statistics
Matches: 66, Mismatches: 14, Indels: 14
0.70 0.15 0.15
Matches are distributed among these distances:
7 4 0.06
8 21 0.32
9 27 0.41
10 7 0.11
11 7 0.11
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (9 bp):
ATTTTTATA
Found at i:36346169 original size:26 final size:25
Alignment explanation
Indices: 36346079--36346170 Score: 89
Period size: 25 Copynumber: 3.6 Consensus size: 25
36346069 ATTTTTTATA
* *
36346079 TATTTTTTA-AAATTTTAATAATTTT
1 TATTTTTTATATATATT-ATAATTTT
* *
36346104 TAATTTTTTATATAT-TTTTAAATTT
1 T-ATTTTTTATATATATTATAATTTT
* *
36346129 TAATATTTATATATATTATAATTTT
1 TATTTTTTATATATATTATAATTTT
36346154 TATTTTTTATCATATAT
1 TATTTTTTAT-ATATAT
36346171 CACAATTACA
Statistics
Matches: 54, Mismatches: 9, Indels: 7
0.77 0.13 0.10
Matches are distributed among these distances:
24 11 0.20
25 24 0.44
26 16 0.30
27 3 0.06
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (25 bp):
TATTTTTTATATATATTATAATTTT
Found at i:36349767 original size:41 final size:39
Alignment explanation
Indices: 36349722--36349839 Score: 130
Period size: 40 Copynumber: 3.0 Consensus size: 39
36349712 GCGCTTGGAC
* *
36349722 AAAAAACGCCACAAAAAATCAAGCATTAGCGGCGCTTTT
1 AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTTTT
* ** *
36349761 ATAAAAACGCTGCTAAAGGTCGAGCATTAGCGGCGCTTTT
1 A-AAAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTTTT
* * *
36349801 AGGAAAACGCCGCTAAAAAT-AAGCATTATCGGCGTTTTT
1 A-AAAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTTTT
36349840 TGAAATGCGC
Statistics
Matches: 64, Mismatches: 14, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
39 17 0.27
40 47 0.73
ACGTcount: A:0.36, C:0.20, G:0.20, T:0.23
Consensus pattern (39 bp):
AAAAAACGCCGCTAAAAATCAAGCATTAGCGGCGCTTTT
Found at i:36349950 original size:41 final size:41
Alignment explanation
Indices: 36349893--36350126 Score: 342
Period size: 41 Copynumber: 5.7 Consensus size: 41
36349883 TGAGTTTTTG
* ** *
36349893 GGGCCTTTAGTGGCGTTTTTGAGGAAGCGCCGCTAATGCCC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
36349934 GGGCCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
36349975 GGGCCTTTAGCGGCGTTTTTGAATAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* *
36350016 GTGCCTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* *
36350057 GGGCCTTTAGTGGCGTTTTTCAAAAAGCGCCGCTAATGCTC
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*** *
36350098 GATTCTTTAGCGGCGTTTTTGAGAAAGCG
1 GGGCCTTTAGCGGCGTTTTTGAAAAAGCG
36350127 TTGCTAATAG
Statistics
Matches: 178, Mismatches: 15, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 178 1.00
ACGTcount: A:0.18, C:0.24, G:0.29, T:0.29
Consensus pattern (41 bp):
GGGCCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
Found at i:36351410 original size:7 final size:7
Alignment explanation
Indices: 36351398--36351437 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
36351388 TCTAATTTAA
*
36351398 GGGTTAT
1 GGGTTAG
36351405 GGGTTAG
1 GGGTTAG
36351412 GGGTTAG
1 GGGTTAG
36351419 GGGTTA-
1 GGGTTAG
36351425 GGGTTAG
1 GGGTTAG
*
36351432 AGGTTA
1 GGGTTA
36351438 AGATTAGTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 6 0.20
7 24 0.80
ACGTcount: A:0.17, C:0.00, G:0.50, T:0.33
Consensus pattern (7 bp):
GGGTTAG
Found at i:36351417 original size:14 final size:14
Alignment explanation
Indices: 36351398--36351437 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
36351388 TCTAATTTAA
*
36351398 GGGTTATGGGTTAG
1 GGGTTAGGGGTTAG
36351412 GGGTTAGGGGTTA-
1 GGGTTAGGGGTTAG
*
36351425 GGGTTAGAGGTTA
1 GGGTTAGGGGTTA
36351438 AGATTAGTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
13 12 0.50
14 12 0.50
ACGTcount: A:0.17, C:0.00, G:0.50, T:0.33
Consensus pattern (14 bp):
GGGTTAGGGGTTAG
Found at i:36351543 original size:75 final size:78
Alignment explanation
Indices: 36351452--36351619 Score: 200
Period size: 81 Copynumber: 2.2 Consensus size: 78
36351442 TAGTTAGGAA
* * * *
36351452 TTTAGGGTTTATGGATTCGGTGTCAGGTT-A-T-GG-TTTAGAGTAATTAGTGTGTTTTAATTTA
1 TTTAGGGGTTAGGGATTCGGGGTCAGGTTAATTAGGATTTAGAGTAATTAGT-TGTTTTAATTCA
*
36351513 TATATTAAATAATG
65 TATATTAAATAAGG
* *
36351527 TTTAGGGGTTAGGGATTCGGGGTCAGGTTAGAGTTTAGGATTTAGATTAATTAGTTTTTTTAATT
1 TTTAGGGGTTAGGGATTCGGGGTCAGGTTA-A--TTAGGATTTAGAGTAATTAGTTGTTTTAATT
36351592 CATATATTAAATAAGG
63 CATATATTAAATAAGG
*
36351608 TTTAAGGGTTAG
1 TTTAGGGGTTAG
36351620 TGGTTAGGGG
Statistics
Matches: 78, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
75 26 0.33
77 1 0.01
80 1 0.01
81 36 0.46
82 14 0.18
ACGTcount: A:0.27, C:0.03, G:0.26, T:0.44
Consensus pattern (78 bp):
TTTAGGGGTTAGGGATTCGGGGTCAGGTTAATTAGGATTTAGAGTAATTAGTTGTTTTAATTCAT
ATATTAAATAAGG
Found at i:36352649 original size:148 final size:146
Alignment explanation
Indices: 36352473--36352821 Score: 495
Period size: 147 Copynumber: 2.4 Consensus size: 146
36352463 AATAAAAGAT
* * * * *
36352473 TTTTAGCATAGCAAAACAGTGTCGTTTTATTCCAAATGAAATAATTTTTTGCGGCGTTTTTGTGA
1 TTTTAGCATAGCAAAACAGTATCGTTTTATTCCAAATAAAATAATTTTTTACGGCATTTTTATGA
* *
36352538 AAAACGTCGCAAAAGGTAAGCAATAGCGGCGTTTTTATAAAAAACGCCACAAAAAATAATTTTAC
66 AAAACGCCGCAAAAGGTAAGCAATAGCGGCGTTTTTATAAAAAACACCAC-AAAAATAATTTTA-
* *
36352603 TTTTAAAAAATAGCGCCC
129 TTTTAAAAAATAGCACCA
* * * *
36352621 TTTTAGCATAGCAAAACACTATCGTTTTATTCCAGATAAAATAA-TTTGTACGGCATTTTTATGG
1 TTTTAGCATAGCAAAACAGTATCGTTTTATTCCAAATAAAATAATTTTTTACGGCATTTTTATGA
* *
36352685 AAAACGCCGCAAAAGGTAAGCAATAGCGGCGTTTTTTTAAAAAACATCACAAAAATAATTTTATT
66 AAAACGCCGCAAAAGGTAAGCAATAGCGGCGTTTTTATAAAAAACACCACAAAAATAATTTTATT
36352750 TTAAAAAATAGCACCA
131 TTAAAAAATAGCACCA
* * *
36352766 TTTTA-TATAACAAAACAGTATCGTTTTATTCTAAATAAAATAATTTTTTTACGGCA
1 TTTTAGCATAGCAAAACAGTATCGTTTTATTCCAAATAAAATAA-TTTTTTACGGCA
36352822 ATAGCGACAT
Statistics
Matches: 178, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
144 33 0.19
145 21 0.12
146 23 0.13
147 61 0.34
148 40 0.22
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33
Consensus pattern (146 bp):
TTTTAGCATAGCAAAACAGTATCGTTTTATTCCAAATAAAATAATTTTTTACGGCATTTTTATGA
AAAACGCCGCAAAAGGTAAGCAATAGCGGCGTTTTTATAAAAAACACCACAAAAATAATTTTATT
TTAAAAAATAGCACCA
Found at i:36356527 original size:35 final size:34
Alignment explanation
Indices: 36356488--36356553 Score: 89
Period size: 34 Copynumber: 1.9 Consensus size: 34
36356478 TAATTGTGTT
36356488 ATTAATTTATTAT-TTTAAAATTTAAAATTAAATTC
1 ATTAATTT-TTATATTT-AAATTTAAAATTAAATTC
**
36356523 ATTAATTTTTATATTTAGTTTTAAAATTAAA
1 ATTAATTTTTATATTTAAATTTAAAATTAAA
36356554 ATTTTCATAG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
34 17 0.61
35 11 0.39
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.53
Consensus pattern (34 bp):
ATTAATTTTTATATTTAAATTTAAAATTAAATTC
Found at i:36356659 original size:24 final size:22
Alignment explanation
Indices: 36356631--36356674 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 22
36356621 AAATTTAAAA
36356631 CATAAAACATAATATAATATTTAT
1 CATAAAA-ATAA-ATAATATTTAT
*
36356655 CATAAAAATAAATATTATTT
1 CATAAAAATAAATAATATTT
36356675 GATTAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 4 0.21
24 7 0.37
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.39
Consensus pattern (22 bp):
CATAAAAATAAATAATATTTAT
Found at i:36356771 original size:43 final size:43
Alignment explanation
Indices: 36356706--36356953 Score: 311
Period size: 43 Copynumber: 5.7 Consensus size: 43
36356696 GGTTATTTTT
* * *
36356706 TAGCGGCGTTTTTGCGATAAGCGCCGCTAAAGGTCGTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
* *
36356749 TAGCAGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCGTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
* * *
36356792 TAGCGGTGTTTGTGGGAAAAGCGCTGCTAAAAGGTTGTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCT-AAAGGTCGTGGTCTA
* * *
36356836 TAGCGGCGTTT-TCGGGAAGAGCGCCGCTAAAGGTCATGGTCTT
1 TAGCGGCGTTTGT-GGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
* ** * *
36356879 TAGCTGCGTTTGTGGGAAAAGTACTGCTAAAGGT-GATGGTCTT
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCG-TGGTCTA
36356922 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
1 TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAG
36356954 ACCATGACCT
Statistics
Matches: 175, Mismatches: 26, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
43 137 0.78
44 38 0.22
ACGTcount: A:0.22, C:0.17, G:0.35, T:0.27
Consensus pattern (43 bp):
TAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
Found at i:36356839 original size:87 final size:86
Alignment explanation
Indices: 36356706--36356953 Score: 320
Period size: 87 Copynumber: 2.9 Consensus size: 86
36356696 GGTTATTTTT
* * * * * *
36356706 TAGCGGCGTTTTTGCGATAAGCGCCGCTAAAGGTCGTGGTCTATAGCAGCGTTTGTGGGAAAAGC
1 TAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTTGTGGTCTATAGCGGCGTTTGTGGGAAAAGC
* *
36356771 GTCGCTAAAGGTCGTGGTCTA
66 GCCGCTAAAGGTCATGGTCTA
* *
36356792 TAGCGGTGTTTGTGGGAAAAGCGCTGCTAAAAGGTTGTGGTCTATAGCGGCGTTT-TCGGGAAGA
1 TAGCGGCGTTTGTGGGAAAAGCGCTGCT-AAAGGTTGTGGTCTATAGCGGCGTTTGT-GGGAAAA
*
36356856 GCGCCGCTAAAGGTCATGGTCTT
64 GCGCCGCTAAAGGTCATGGTCTA
* ** *
36356879 TAGCTGCGTTTGTGGGAAAAGTACTGCTAAAGG-TGATGGTCTTTAGCGGCGTTTGTGGGAAAAG
1 TAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTTG-TGGTCTATAGCGGCGTTTGTGGGAAAAG
36356943 CGCCGCTAAAG
65 CGCCGCTAAAG
36356954 ACCATGACCT
Statistics
Matches: 141, Mismatches: 17, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
85 2 0.01
86 64 0.45
87 75 0.53
ACGTcount: A:0.22, C:0.17, G:0.35, T:0.27
Consensus pattern (86 bp):
TAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTTGTGGTCTATAGCGGCGTTTGTGGGAAAAGC
GCCGCTAAAGGTCATGGTCTA
Found at i:36356939 original size:130 final size:130
Alignment explanation
Indices: 36356706--36356952 Score: 358
Period size: 130 Copynumber: 1.9 Consensus size: 130
36356696 GGTTATTTTT
* *
36356706 TAGCGGCGTTTTTGCGATAAGCGCCGCTAAAGGTCGTGGTCTATAGCAGCGTTTGTGGGAAAAGC
1 TAGCGGCGTTTTCGCGATAAGCGCCGCTAAAGGTCATGGTCTATAGCAGCGTTTGTGGGAAAAGC
* *
36356771 GTCGCTAAAGGTCGTGGTCTATAGCGGTGTTTGTGGGAAAAGCGCTGCTAAAAGGTTGTGGTCTA
66 GTCGCTAAAGGTCGTGGTCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGGTTGTGGTCTA
* * *
36356836 TAGCGGCGTTTTCGGGA-AGAGCGCCGCTAAAGGTCATGGTCTTTAGCTGCGTTTGTGGGAAAA-
1 TAGCGGCGTTTTCGCGATA-AGCGCCGCTAAAGGTCATGGTCTATAGCAGCGTTTGTGGGAAAAG
*
36356899 -GTACTGCTAAAGGT-GATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAA
65 CGT-C-GCTAAAGGTCG-TGGTCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAA
36356953 GACCATGACC
Statistics
Matches: 105, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
128 2 0.02
129 3 0.03
130 100 0.95
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.27
Consensus pattern (130 bp):
TAGCGGCGTTTTCGCGATAAGCGCCGCTAAAGGTCATGGTCTATAGCAGCGTTTGTGGGAAAAGC
GTCGCTAAAGGTCGTGGTCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGGTTGTGGTCTA
Found at i:36356991 original size:130 final size:131
Alignment explanation
Indices: 36356722--36356997 Score: 301
Period size: 130 Copynumber: 2.1 Consensus size: 131
36356712 CGTTTTTGCG
*
36356722 ATAAGCGCCGCTAAAGGTCGTGGTCTATAGCAGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCGTG
1 ATAAGCGCCGCTAAAGGTCATGGTCTATAGCAGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCGTG
* * **** ** * * *
36356787 GTCTATAGCGGTGTTTGTGGGAAAAGCGCTGCTAAAAGGTTGTGGTCTATAGCGGCGTTTTCGGG
66 GTCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGACCATGACCTATAGCAGCATTTTCGGA
36356852 A
131 A
* * *
36356853 A-GAGCGCCGCTAAAGGTCATGGTCTTTAGCTGCGTTTGTGGGAAAA--GTACTGCTAAAGGT-G
1 ATAAGCGCCGCTAAAGGTCATGGTCTATAGCAGCGTTTGTGGGAAAAGCGT-C-GCTAAAGGTCG
* * *
36356914 ATGGTCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCT-AAAGACCATGACCTTTAGCAGCATTTTT
64 -TGGTCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGACCATGACCTATAGCAGCATTTTC
**
36356978 TTAA
128 GGAA
*
36356982 ATAAACGCCGCTAAAG
1 ATAAGCGCCGCTAAAG
36356998 TTAGCGGCAC
Statistics
Matches: 119, Mismatches: 22, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
128 2 0.02
129 22 0.18
130 94 0.79
131 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.31, T:0.27
Consensus pattern (131 bp):
ATAAGCGCCGCTAAAGGTCATGGTCTATAGCAGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCGTG
GTCTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAAGACCATGACCTATAGCAGCATTTTCGGA
A
Found at i:36357898 original size:21 final size:21
Alignment explanation
Indices: 36357865--36357924 Score: 79
Period size: 21 Copynumber: 2.9 Consensus size: 21
36357855 CCTTTTGTCC
36357865 TTTTTTAGTT-TTTTT-ATTTG
1 TTTTTTA-TTATTTTTAATTTG
36357885 TTTTTTATTATTTTTAATTTG
1 TTTTTTATTATTTTTAATTTG
*
36357906 TTTATTATTATTTTATAAT
1 TTTTTTATTATTTT-TAAT
36357925 ATTTTATGTA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
19 2 0.06
20 12 0.33
21 18 0.50
22 4 0.11
ACGTcount: A:0.20, C:0.00, G:0.05, T:0.75
Consensus pattern (21 bp):
TTTTTTATTATTTTTAATTTG
Found at i:36357930 original size:21 final size:20
Alignment explanation
Indices: 36357885--36357941 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 20
36357875 TTTTTATTTG
*
36357885 TTTT-TTATTATTTTTAATT
1 TTTTATTATTATTTTTAATA
36357904 TGTTTATTATTATTTTATAATA
1 T-TTTATTATTATTTT-TAATA
36357926 TTTTATGTA-TATTTTT
1 TTTTAT-TATTATTTTT
36357942 TTGGTGGAGC
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
19 1 0.03
20 4 0.12
21 21 0.64
22 7 0.21
ACGTcount: A:0.25, C:0.00, G:0.04, T:0.72
Consensus pattern (20 bp):
TTTTATTATTATTTTTAATA
Found at i:36358719 original size:15 final size:16
Alignment explanation
Indices: 36358699--36358729 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
36358689 ATGTTTGAAA
36358699 TGTAAAAT-TATATTT
1 TGTAAAATATATATTT
36358714 TGTAAAATATATATTT
1 TGTAAAATATATATTT
36358730 GGAATAATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (16 bp):
TGTAAAATATATATTT
Found at i:36362485 original size:13 final size:13
Alignment explanation
Indices: 36362467--36362491 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36362457 GATATATTTG
36362467 CATATACATAATA
1 CATATACATAATA
36362480 CATATACATAAT
1 CATATACATAAT
36362492 TTTTTTACAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (13 bp):
CATATACATAATA
Found at i:36363098 original size:31 final size:31
Alignment explanation
Indices: 36363060--36363122 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
36363050 GATTTACAAG
36363060 TAAGGGGGAGGCTCTCTATTTATAGTTGAGC
1 TAAGGGGGAGGCTCTCTATTTATAGTTGAGC
36363091 TAAGGGGGAGGCTCTCTATTTATAGTTGAGC
1 TAAGGGGGAGGCTCTCTATTTATAGTTGAGC
36363122 T
1 T
36363123 CCCCTAAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.22, C:0.13, G:0.32, T:0.33
Consensus pattern (31 bp):
TAAGGGGGAGGCTCTCTATTTATAGTTGAGC
Found at i:36367946 original size:7 final size:7
Alignment explanation
Indices: 36367934--36367964 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
36367924 GAATGTACAT
36367934 TAATGAA
1 TAATGAA
36367941 TAATGAA
1 TAATGAA
36367948 TAATGAA
1 TAATGAA
*
36367955 TAATCAA
1 TAATGAA
36367962 TAA
1 TAA
36367965 ATAAATTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.58, C:0.03, G:0.10, T:0.29
Consensus pattern (7 bp):
TAATGAA
Found at i:36369342 original size:13 final size:13
Alignment explanation
Indices: 36369324--36369348 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36369314 TTCTTTGCGC
36369324 TTGTTTGTTTGTG
1 TTGTTTGTTTGTG
36369337 TTGTTTGTTTGT
1 TTGTTTGTTTGT
36369349 CCTTCTTACA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.00, G:0.28, T:0.72
Consensus pattern (13 bp):
TTGTTTGTTTGTG
Found at i:36383355 original size:118 final size:113
Alignment explanation
Indices: 36383136--36383361 Score: 398
Period size: 118 Copynumber: 2.0 Consensus size: 113
36383126 CTACTTCTTG
36383136 ATTTATTTCCTGTGTGCAAAATATGACCTGTGCATATTGGTAACATTCAAAGGTAAAATGGTAAA
1 ATTTATTTCCTGTGTGCAAAATATGACCTGTGCATATTGGTAACATTCAAAGGTAAAATGGTAAA
*
36383201 AAGATACCAAAAAGAAAAAAGAATGAACCATGGATTTAACCCCCTGGT
66 AAGATACCAAAAACAAAAAAGAATGAACCATGGATTTAACCCCCTGGT
36383249 ATTTATTTCCTGTGTGCAAAATATGACCTGTGCATATTGGTAACATTCAAAGGAAAGGTAAAATG
1 ATTTATTTCCTGTGTGCAAAATATGACCTGTGCATATTGGTAACATTC-----AAAGGTAAAATG
36383314 GTAAAAAGATACCAAAAACAAAAAAGAATGAACCATGGATTTAACCCC
61 GTAAAAAGATACCAAAAACAAAAAAGAATGAACCATGGATTTAACCCC
36383362 TTCGTTTTTA
Statistics
Matches: 107, Mismatches: 1, Indels: 5
0.95 0.01 0.04
Matches are distributed among these distances:
113 48 0.45
118 59 0.55
ACGTcount: A:0.42, C:0.15, G:0.17, T:0.26
Consensus pattern (113 bp):
ATTTATTTCCTGTGTGCAAAATATGACCTGTGCATATTGGTAACATTCAAAGGTAAAATGGTAAA
AAGATACCAAAAACAAAAAAGAATGAACCATGGATTTAACCCCCTGGT
Found at i:36389202 original size:12 final size:13
Alignment explanation
Indices: 36389185--36389214 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
36389175 TTATTTAATA
36389185 TTAATAT-AAATT
1 TTAATATAAAATT
36389197 TTAATATAAAATT
1 TTAATATAAAATT
36389210 TTAAT
1 TTAAT
36389215 TTATTATTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 7 0.41
13 10 0.59
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
TTAATATAAAATT
Found at i:36389247 original size:28 final size:26
Alignment explanation
Indices: 36389203--36389261 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 26
36389193 AATTTTAATA
*
36389203 TAAAATTTTAATTTATTATTATATTTTT
1 TAAAATTTTAATGTATT-TT-TATTTTT
36389231 TAAAATATTT-ATGTATTTTTATTTTT
1 TAAAAT-TTTAATGTATTTTTATTTTT
36389257 TAAAA
1 TAAAA
36389262 GTAGGATCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 12 0.41
27 2 0.07
28 12 0.41
29 3 0.10
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.61
Consensus pattern (26 bp):
TAAAATTTTAATGTATTTTTATTTTT
Found at i:36390208 original size:9 final size:9
Alignment explanation
Indices: 36390194--36390251 Score: 89
Period size: 9 Copynumber: 6.4 Consensus size: 9
36390184 GTAGTGATTC
*
36390194 AATTCGGTT
1 AATTCGGGT
36390203 AATTCGGGT
1 AATTCGGGT
36390212 AATTCGGGT
1 AATTCGGGT
*
36390221 AATTCGGTT
1 AATTCGGGT
36390230 AATTCGGGT
1 AATTCGGGT
*
36390239 AATTCGGTT
1 AATTCGGGT
36390248 AATT
1 AATT
36390252 TTTAACAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 45 1.00
ACGTcount: A:0.24, C:0.10, G:0.26, T:0.40
Consensus pattern (9 bp):
AATTCGGGT
Found at i:36390217 original size:18 final size:18
Alignment explanation
Indices: 36390194--36390251 Score: 98
Period size: 18 Copynumber: 3.2 Consensus size: 18
36390184 GTAGTGATTC
* *
36390194 AATTCGGTTAATTCGGGT
1 AATTCGGGTAATTCGGTT
36390212 AATTCGGGTAATTCGGTT
1 AATTCGGGTAATTCGGTT
36390230 AATTCGGGTAATTCGGTT
1 AATTCGGGTAATTCGGTT
36390248 AATT
1 AATT
36390252 TTTAACAAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.24, C:0.10, G:0.26, T:0.40
Consensus pattern (18 bp):
AATTCGGGTAATTCGGTT
Found at i:36390226 original size:27 final size:27
Alignment explanation
Indices: 36390194--36390251 Score: 107
Period size: 27 Copynumber: 2.1 Consensus size: 27
36390184 GTAGTGATTC
36390194 AATTCGGTTAATTCGGGTAATTCGGGT
1 AATTCGGTTAATTCGGGTAATTCGGGT
*
36390221 AATTCGGTTAATTCGGGTAATTCGGTT
1 AATTCGGTTAATTCGGGTAATTCGGGT
36390248 AATT
1 AATT
36390252 TTTAACAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.24, C:0.10, G:0.26, T:0.40
Consensus pattern (27 bp):
AATTCGGTTAATTCGGGTAATTCGGGT
Found at i:36401098 original size:14 final size:14
Alignment explanation
Indices: 36401076--36401126 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 14
36401066 TATACAATAT
36401076 ATAAAAATATTCTC
1 ATAAAAATATTCTC
* *
36401090 ATAATAATA-T-TG
1 ATAAAAATATTCTC
*
36401102 ATAAAAATACTCTC
1 ATAAAAATATTCTC
*
36401116 ATAATAATATT
1 ATAAAAATATT
36401127 TTTTACTTTC
Statistics
Matches: 29, Mismatches: 6, Indels: 4
0.74 0.15 0.10
Matches are distributed among these distances:
12 9 0.31
13 2 0.07
14 18 0.62
ACGTcount: A:0.51, C:0.10, G:0.02, T:0.37
Consensus pattern (14 bp):
ATAAAAATATTCTC
Found at i:36401105 original size:26 final size:26
Alignment explanation
Indices: 36401076--36401126 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
36401066 TATACAATAT
*
36401076 ATAAAAATATTCTCATAATAATATTG
1 ATAAAAATACTCTCATAATAATATTG
36401102 ATAAAAATACTCTCATAATAATATT
1 ATAAAAATACTCTCATAATAATATT
36401127 TTTTACTTTC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.51, C:0.10, G:0.02, T:0.37
Consensus pattern (26 bp):
ATAAAAATACTCTCATAATAATATTG
Found at i:36401275 original size:23 final size:23
Alignment explanation
Indices: 36401249--36401295 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
36401239 TAATTACTTG
36401249 TAATATCAACTCCGTCAGAGATT
1 TAATATCAACTCCGTCAGAGATT
36401272 TAATATCAACTCCGTCAGAGATT
1 TAATATCAACTCCGTCAGAGATT
36401295 T
1 T
36401296 TAAGTAGTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.21, G:0.13, T:0.32
Consensus pattern (23 bp):
TAATATCAACTCCGTCAGAGATT
Found at i:36402422 original size:56 final size:56
Alignment explanation
Indices: 36402361--36402470 Score: 139
Period size: 56 Copynumber: 2.0 Consensus size: 56
36402351 GTCCATGCCC
* * * *
36402361 GTGTGAATATACTGACTTGGGACACACGGCCAAGCCACACGCCCGTGTGCTAAGTT
1 GTGTGAATATACTGACTTAGGACACACAGCCAAACCACACGCCCATGTGCTAAGTT
* * * * *
36402417 GTGTGAGTATACTGCCTTAGGTCATACATCCAAACCACACGCCCATGTGCTAAG
1 GTGTGAATATACTGACTTAGGACACACAGCCAAACCACACGCCCATGTGCTAAG
36402471 CCGTGTGAGC
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
56 45 1.00
ACGTcount: A:0.26, C:0.27, G:0.24, T:0.23
Consensus pattern (56 bp):
GTGTGAATATACTGACTTAGGACACACAGCCAAACCACACGCCCATGTGCTAAGTT
Found at i:36403538 original size:25 final size:25
Alignment explanation
Indices: 36403463--36403539 Score: 93
Period size: 25 Copynumber: 3.1 Consensus size: 25
36403453 GAGTAGTAAA
* *
36403463 CGGGAAGCTCTT-CTGAGCTGAATAA
1 CGGGAAGCTCTTGC-GAGCTAAATAT
* * *
36403488 CGGGAAGCTCATGAGAGCTAAGTAT
1 CGGGAAGCTCTTGCGAGCTAAATAT
36403513 CGGGAAGCTCTTGCGAGCTAAATAT
1 CGGGAAGCTCTTGCGAGCTAAATAT
36403538 CG
1 CG
36403540 AAAAGCTCAT
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
25 43 1.00
ACGTcount: A:0.29, C:0.19, G:0.30, T:0.22
Consensus pattern (25 bp):
CGGGAAGCTCTTGCGAGCTAAATAT
Found at i:36403545 original size:25 final size:25
Alignment explanation
Indices: 36403492--36403556 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
36403482 GAATAACGGG
* * **
36403492 AAGCTCATGAGAGCTAAGTATCGGG
1 AAGCTCATGCGAGCTAAATATCGAA
*
36403517 AAGCTCTTGCGAGCTAAATATCGAA
1 AAGCTCATGCGAGCTAAATATCGAA
*
36403542 AAGCTCATGCAAGCT
1 AAGCTCATGCGAGCT
36403557 GTGGTGCGTC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.22
Consensus pattern (25 bp):
AAGCTCATGCGAGCTAAATATCGAA
Found at i:36409957 original size:55 final size:56
Alignment explanation
Indices: 36409846--36409965 Score: 161
Period size: 55 Copynumber: 2.2 Consensus size: 56
36409836 GTGTCCACGC
* * * *
36409846 CCGTGTGAATATACTGACTTGGGACACACGACCAAGCCACACGCCCGTGTGCTAAG
1 CCGTGTGAGTATACTAACTTGGGACACACGACCAAACCACACACCCGTGTGCTAAG
* * *
36409902 CCGTGTGAGTATACTAACTT-GGTCAGACGCCCAAACCACACACCCGTGTGCTAAG
1 CCGTGTGAGTATACTAACTTGGGACACACGACCAAACCACACACCCGTGTGCTAAG
*
36409957 CCGTTTGAG
1 CCGTGTGAG
36409966 CAATTTGAGC
Statistics
Matches: 56, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
55 38 0.68
56 18 0.32
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (56 bp):
CCGTGTGAGTATACTAACTTGGGACACACGACCAAACCACACACCCGTGTGCTAAG
Found at i:36411019 original size:25 final size:25
Alignment explanation
Indices: 36410954--36411019 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
36410944 CAGTAAACGG
* * * *
36410954 GAAGGTCATGAGAGCTAAGTATCGG
1 GAAGCTCATGCGAGCTAAATATCGA
* *
36410979 GAAGCTCTTGCAAGCTAAATATCGA
1 GAAGCTCATGCGAGCTAAATATCGA
*
36411004 GAAGCTGATGCGAGCT
1 GAAGCTCATGCGAGCT
36411020 GTGGTGTGTC
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.32, C:0.17, G:0.30, T:0.21
Consensus pattern (25 bp):
GAAGCTCATGCGAGCTAAATATCGA
Found at i:36414649 original size:17 final size:17
Alignment explanation
Indices: 36414624--36414672 Score: 55
Period size: 17 Copynumber: 2.9 Consensus size: 17
36414614 TTTAGGGTTT
*
36414624 TTAGGTTTAAGGTTTTG
1 TTAGTTTTAAGGTTTTG
* *
36414641 TTAGTTTTAGGGTTTAG
1 TTAGTTTTAAGGTTTTG
*
36414658 GT-GTTTTAAGGTTTT
1 TTAGTTTTAAGGTTTT
36414673 TGGAATTTTA
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
16 11 0.42
17 15 0.58
ACGTcount: A:0.16, C:0.00, G:0.29, T:0.55
Consensus pattern (17 bp):
TTAGTTTTAAGGTTTTG
Found at i:36414750 original size:17 final size:17
Alignment explanation
Indices: 36414720--36414775 Score: 58
Period size: 19 Copynumber: 3.1 Consensus size: 17
36414710 GTTTTAAGGG
36414720 TTTTATAGGTTTAGGGAT
1 TTTTAT-GGTTTAGGGAT
*
36414738 TTTTATGGTTTAGGGCT
1 TTTTATGGTTTAGGGAT
* *
36414755 CCTTATAGGGTTTAGGGAT
1 --TTTTATGGTTTAGGGAT
36414774 TT
1 TT
36414776 GAGATAGACA
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
17 12 0.38
18 6 0.19
19 14 0.44
ACGTcount: A:0.18, C:0.05, G:0.29, T:0.48
Consensus pattern (17 bp):
TTTTATGGTTTAGGGAT
Found at i:36428762 original size:42 final size:43
Alignment explanation
Indices: 36428660--36428780 Score: 138
Period size: 43 Copynumber: 2.8 Consensus size: 43
36428650 AACTTGTACA
* * *
36428660 ATGCC-ATCGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAAT-GTCCCAGACATGGTCTTACACGAAATCAAATATCG
* * * * *
36428703 ATGTCACTGTCCTAGACAAGGTCTTACACGAAATCATATA-CG
1 ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
36428745 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATC
1 ATGCCAATGTCCCAGACATGGTCTTACACG-AAATC
36428781 TCAAATAGAT
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
42 28 0.44
43 35 0.55
44 1 0.02
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGAAATCAAATATCG
Found at i:36435275 original size:16 final size:15
Alignment explanation
Indices: 36435235--36435276 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
36435225 AGATGATAAT
36435235 TATTAATATATAATTA
1 TATTAAT-TATAATTA
36435251 TA-TACATTATAATATA
1 TATTA-ATTATAAT-TA
36435267 TATTAATTAT
1 TATTAATTAT
36435277 TATCAGCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
15 8 0.35
16 13 0.57
17 2 0.09
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (15 bp):
TATTAATTATAATTA
Found at i:36435852 original size:20 final size:22
Alignment explanation
Indices: 36435819--36435859 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
36435809 AGACCAATTT
36435819 TTCTCCTAAATTTT-AATTTAA
1 TTCTCCTAAATTTTCAATTTAA
*
36435840 TTCT-CTAATTTTTCAATTTA
1 TTCTCCTAAATTTTCAATTTA
36435860 TTAAATTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.29, C:0.15, G:0.00, T:0.56
Consensus pattern (22 bp):
TTCTCCTAAATTTTCAATTTAA
Found at i:36435877 original size:25 final size:24
Alignment explanation
Indices: 36435831--36435891 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
36435821 CTCCTAAATT
* *
36435831 TTAATTTAATTCTCTAATTTTTCA-A
1 TTAATTAAATTAT-TAATTTTT-ATA
*
36435856 TTTATTAAATTATTAATATTTTATA
1 TTAATTAAATTATTAAT-TTTTATA
36435881 TTAATTAAATT
1 TTAATTAAATT
36435892 TTTGAAAAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
24 5 0.17
25 25 0.83
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (24 bp):
TTAATTAAATTATTAATTTTTATA
Found at i:36449067 original size:4 final size:4
Alignment explanation
Indices: 36449058--36449089 Score: 57
Period size: 4 Copynumber: 8.2 Consensus size: 4
36449048 ATCTAAGCCC
36449058 CATA CATA CATA CATA CATA CATA C-TA CATA C
1 CATA CATA CATA CATA CATA CATA CATA CATA C
36449090 TTATTCATCC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 3 0.11
4 24 0.89
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (4 bp):
CATA
Found at i:36451054 original size:23 final size:20
Alignment explanation
Indices: 36451024--36451067 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 20
36451014 TCCATCCACT
36451024 AGTTTATATATATAGTTAGATTA
1 AGTTTATA-AT-TAGTTA-ATTA
36451047 AGTTTATAATTAGTTAATTA
1 AGTTTATAATTAGTTAATTA
36451067 A
1 A
36451068 TTAGGTTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 5 0.24
21 6 0.29
22 2 0.10
23 8 0.38
ACGTcount: A:0.41, C:0.00, G:0.11, T:0.48
Consensus pattern (20 bp):
AGTTTATAATTAGTTAATTA
Found at i:36453164 original size:20 final size:20
Alignment explanation
Indices: 36453139--36453177 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
36453129 TTGTTTCTTC
36453139 TTTACTTACTCT-CTTACTTG
1 TTTACTTACT-TGCTTACTTG
36453159 TTTACTTACTTGCTTACTT
1 TTTACTTACTTGCTTACTT
36453178 AAATAACTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.15, C:0.23, G:0.05, T:0.56
Consensus pattern (20 bp):
TTTACTTACTTGCTTACTTG
Found at i:36453522 original size:50 final size:50
Alignment explanation
Indices: 36453468--36453574 Score: 133
Period size: 50 Copynumber: 2.1 Consensus size: 50
36453458 ACATAGGAGT
* * * * *
36453468 TCTCATATTAGTACCCATGCCATGTCTCAGACATGGTCTTACGGGGGACC
1 TCTCATATCAGTACCAACGCCATGTCCCAGACATGGTCTTACGGGAGACC
* * * *
36453518 TCTCATCTCGGTGCCAACGCCATGTCCCAGACATGGTCTTACGTGAGACC
1 TCTCATATCAGTACCAACGCCATGTCCCAGACATGGTCTTACGGGAGACC
36453568 TCTCATA
1 TCTCATA
36453575 AACTCAATAA
Statistics
Matches: 47, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.21, C:0.31, G:0.21, T:0.27
Consensus pattern (50 bp):
TCTCATATCAGTACCAACGCCATGTCCCAGACATGGTCTTACGGGAGACC
Found at i:36455652 original size:26 final size:26
Alignment explanation
Indices: 36455622--36455700 Score: 67
Period size: 26 Copynumber: 3.1 Consensus size: 26
36455612 TCAAGATAAA
36455622 TATTAGATTAAATTTAATATTAAATT
1 TATTAGATTAAATTTAATATTAAATT
* ** *
36455648 TATTAAATT-AATAGAATATT-TATCT
1 TATTAGATTAAATTTAATATTAAAT-T
36455673 TATATAGA-TAAATATTAA-ATTAAATT
1 TAT-TAGATTAAAT-TTAATATTAAATT
36455699 TA
1 TA
36455701 ATATTAAGAT
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
24 2 0.05
25 14 0.35
26 20 0.50
27 4 0.10
ACGTcount: A:0.48, C:0.01, G:0.04, T:0.47
Consensus pattern (26 bp):
TATTAGATTAAATTTAATATTAAATT
Found at i:36455655 original size:58 final size:60
Alignment explanation
Indices: 36455590--36455707 Score: 159
Period size: 63 Copynumber: 1.9 Consensus size: 60
36455580 ATCACTTTAA
* *
36455590 TATTAAATTAATATAACACTTATC-A-AGATAAATATTAGATTAAATTTAATATTAAATT
1 TATTAAATTAATAGAACACTTATCTATAGATAAATATTAAATTAAATTTAATATTAAATT
* *
36455648 TATTAAATTAATAGAATATTTATCTTATATAGATAAATATTAAATTAAATTTAATATTAA
1 TATTAAATTAATAGAACACTTATC---TATAGATAAATATTAAATTAAATTTAATATTAA
36455708 GATAATCACT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
58 21 0.41
62 1 0.02
63 29 0.57
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.43
Consensus pattern (60 bp):
TATTAAATTAATAGAACACTTATCTATAGATAAATATTAAATTAAATTTAATATTAAATT
Found at i:36455752 original size:39 final size:39
Alignment explanation
Indices: 36455702--36455784 Score: 159
Period size: 39 Copynumber: 2.2 Consensus size: 39
36455692 TTAAATTTAA
36455702 TATTAAGATAATCACTTTAATATTAAATTATTAAAATAC
1 TATTAAGATAATCACTTTAATATTAAATTATTAAAATAC
36455741 TATTAAGATAATCACTTTAATATTAAATTATTAAAATAC
1 TATTAAGATAATCACTTTAATATTAAATTATTAAAATAC
36455780 T-TTAA
1 TATTAA
36455785 TATTAAATTA
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
38 4 0.09
39 40 0.91
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.42
Consensus pattern (39 bp):
TATTAAGATAATCACTTTAATATTAAATTATTAAAATAC
Found at i:36455782 original size:63 final size:63
Alignment explanation
Indices: 36455715--36455843 Score: 258
Period size: 63 Copynumber: 2.0 Consensus size: 63
36455705 TAAGATAATC
36455715 ACTTTAATATTAAATTATTAAAATACTATTAAGATAATCACTTTAATATTAAATTATTAAAAT
1 ACTTTAATATTAAATTATTAAAATACTATTAAGATAATCACTTTAATATTAAATTATTAAAAT
36455778 ACTTTAATATTAAATTATTAAAATACTATTAAGATAATCACTTTAATATTAAATTATTAAAAT
1 ACTTTAATATTAAATTATTAAAATACTATTAAGATAATCACTTTAATATTAAATTATTAAAAT
36455841 ACT
1 ACT
36455844 ATCAAGATAA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 66 1.00
ACGTcount: A:0.49, C:0.07, G:0.02, T:0.43
Consensus pattern (63 bp):
ACTTTAATATTAAATTATTAAAATACTATTAAGATAATCACTTTAATATTAAATTATTAAAAT
Done.