Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 118 of 173
Found at i:36455785 original size:24 final size:24
Alignment explanation
Indices: 36455754--36455809 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
36455744 TAAGATAATC
36455754 ACTTTAATATTAAATTATTAAAAT
1 ACTTTAATATTAAATTATTAAAAT
36455778 ACTTTAATATTAAATTATTAAAAT
1 ACTTTAATATTAAATTATTAAAAT
36455802 ACTATTAA
1 ACT-TTAA
36455810 GATAATCACT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
24 27 0.87
25 4 0.13
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (24 bp):
ACTTTAATATTAAATTATTAAAAT
Found at i:36455822 original size:39 final size:39
Alignment explanation
Indices: 36455777--36455884 Score: 152
Period size: 39 Copynumber: 2.8 Consensus size: 39
36455767 ATTATTAAAA
36455777 TACTTTAATATTAAATTATTAAAATACTATTAAGATAA-
1 TACTTTAATATTAAATTATTAAAATACTATTAAGATAAG
*
36455815 TCACTTTAATATTAAATTATTAAAATACTATCAAGATAAG
1 T-ACTTTAATATTAAATTATTAAAATACTATTAAGATAAG
*
36455855 T--TTTAA-ATTAAATTTATTAAAATAATATTA
1 TACTTTAATATTAAA-TTATTAAAATACTATTA
36455885 TTTTTGGAAT
Statistics
Matches: 64, Mismatches: 3, Indels: 7
0.86 0.04 0.09
Matches are distributed among these distances:
36 6 0.09
37 20 0.31
38 1 0.02
39 36 0.56
40 1 0.02
ACGTcount: A:0.49, C:0.06, G:0.03, T:0.43
Consensus pattern (39 bp):
TACTTTAATATTAAATTATTAAAATACTATTAAGATAAG
Found at i:36456291 original size:10 final size:10
Alignment explanation
Indices: 36456276--36456304 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
36456266 AAAAATATCA
36456276 AATTAATTTT
1 AATTAATTTT
36456286 AATTAATTTT
1 AATTAATTTT
36456296 AATTAATTT
1 AATTAATTT
36456305 GACTAATTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (10 bp):
AATTAATTTT
Found at i:36456673 original size:49 final size:49
Alignment explanation
Indices: 36456616--36456709 Score: 170
Period size: 49 Copynumber: 1.9 Consensus size: 49
36456606 CAATTTACTT
* *
36456616 ATTGAAAACTCCTTATTGTATACTCTTTACAAAAACAATTCATCCCATG
1 ATTGAAAACTCCTTACTGTATACTCTTTACAAAAACAATGCATCCCATG
36456665 ATTGAAAACTCCTTACTGTATACTCTTTACAAAAACAATGCATCC
1 ATTGAAAACTCCTTACTGTATACTCTTTACAAAAACAATGCATCC
36456710 ATCTGTTTTG
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 43 1.00
ACGTcount: A:0.37, C:0.23, G:0.06, T:0.33
Consensus pattern (49 bp):
ATTGAAAACTCCTTACTGTATACTCTTTACAAAAACAATGCATCCCATG
Found at i:36459831 original size:174 final size:174
Alignment explanation
Indices: 36459541--36459888 Score: 687
Period size: 174 Copynumber: 2.0 Consensus size: 174
36459531 AAACTCTTAA
36459541 AAGCAATATAAAGCATTACAAGTTAAATCTTTGATAAAATAGACATATTTGTGGCATGCAATACT
1 AAGCAATATAAAGCATTACAAGTTAAATCTTTGATAAAATAGACATATTTGTGGCATGCAATACT
36459606 ATTCGCCATTTGAAAACATATTCCCAAAAATATCCCTTTGTATGCATAACATCGTACTACGGTCA
66 ATTCGCCATTTGAAAACATATTCCCAAAAATATCCCTTTGTATGCATAACATCGTACTACGGTCA
36459671 ACCACGTTGGTGCATTCCTAACTTGGTCCCTTATGGCGAACTGG
131 ACCACGTTGGTGCATTCCTAACTTGGTCCCTTATGGCGAACTGG
*
36459715 AAGCAATATAAAGCATTACATGTTAAATCTTTGATAAAATAGACATATTTGTGGCATGCAATACT
1 AAGCAATATAAAGCATTACAAGTTAAATCTTTGATAAAATAGACATATTTGTGGCATGCAATACT
36459780 ATTCGCCATTTGAAAACATATTCCCAAAAATATCCCTTTGTATGCATAACATCGTACTACGGTCA
66 ATTCGCCATTTGAAAACATATTCCCAAAAATATCCCTTTGTATGCATAACATCGTACTACGGTCA
36459845 ACCACGTTGGTGCATTCCTAACTTGGTCCCTTATGGCGAACTGG
131 ACCACGTTGGTGCATTCCTAACTTGGTCCCTTATGGCGAACTGG
36459889 TTCAGCTCAA
Statistics
Matches: 173, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
174 173 1.00
ACGTcount: A:0.33, C:0.21, G:0.16, T:0.31
Consensus pattern (174 bp):
AAGCAATATAAAGCATTACAAGTTAAATCTTTGATAAAATAGACATATTTGTGGCATGCAATACT
ATTCGCCATTTGAAAACATATTCCCAAAAATATCCCTTTGTATGCATAACATCGTACTACGGTCA
ACCACGTTGGTGCATTCCTAACTTGGTCCCTTATGGCGAACTGG
Found at i:36460634 original size:25 final size:25
Alignment explanation
Indices: 36460606--36460693 Score: 95
Period size: 25 Copynumber: 3.5 Consensus size: 25
36460596 GACTCACCAA
* *
36460606 AAAGGCTTCCCAAGTAAATTGCCAC
1 AAAGGCTTCACAAGTAAATTCCCAC
* * *
36460631 AAAGGCTTTACAAGTGACTTCCCAC
1 AAAGGCTTCACAAGTAAATTCCCAC
** *
36460656 AAAGGCTTCTGAAGTAAATCCCCAC
1 AAAGGCTTCACAAGTAAATTCCCAC
*
36460681 AAAGGCTTTACAA
1 AAAGGCTTCACAA
36460694 ATGACTCATG
Statistics
Matches: 49, Mismatches: 14, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.36, C:0.26, G:0.16, T:0.22
Consensus pattern (25 bp):
AAAGGCTTCACAAGTAAATTCCCAC
Found at i:36464238 original size:13 final size:13
Alignment explanation
Indices: 36464220--36464244 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36464210 CAATTAGAGG
36464220 ATATTGTTAATTC
1 ATATTGTTAATTC
36464233 ATATTGTTAATT
1 ATATTGTTAATT
36464245 TAAACATTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.08, T:0.56
Consensus pattern (13 bp):
ATATTGTTAATTC
Found at i:36470591 original size:22 final size:22
Alignment explanation
Indices: 36470563--36470682 Score: 123
Period size: 22 Copynumber: 5.5 Consensus size: 22
36470553 TACACCATAC
*
36470563 TAGAGAGCACCGTAGTGCTAAA
1 TAGAGAGCACCGAAGTGCTAAA
*
36470585 TAGAGAGCACCAAAGTGCTAAA
1 TAGAGAGCACCGAAGTGCTAAA
* ** ** * *
36470607 TATAGAGCACTAAAACGCCAAG
1 TAGAGAGCACCGAAGTGCTAAA
* *
36470629 TAGAGAGCACCGAAGTGTTGAA
1 TAGAGAGCACCGAAGTGCTAAA
* *
36470651 TAGAGAGCATCGAAGTGCTAGA
1 TAGAGAGCACCGAAGTGCTAAA
36470673 TAGAGAGCAC
1 TAGAGAGCAC
36470683 TAAAGTGTTG
Statistics
Matches: 76, Mismatches: 22, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
22 76 1.00
ACGTcount: A:0.40, C:0.17, G:0.27, T:0.16
Consensus pattern (22 bp):
TAGAGAGCACCGAAGTGCTAAA
Found at i:36470653 original size:66 final size:66
Alignment explanation
Indices: 36470563--36470686 Score: 185
Period size: 66 Copynumber: 1.9 Consensus size: 66
36470553 TACACCATAC
* *
36470563 TAGAGAGCACCGTAGTGCTAAATAGAGAGCACCAAAGTGCTAAATATAGAGCACTAAAACGCCAA
1 TAGAGAGCACCGAAGTGCTAAATAGAGAGCACCAAAGTGCTAAATAGAGAGCACTAAAACGCCAA
36470628 G
66 G
* * * * *
36470629 TAGAGAGCACCGAAGTGTTGAATAGAGAGCATCGAAGTGCTAGATAGAGAGCACTAAA
1 TAGAGAGCACCGAAGTGCTAAATAGAGAGCACCAAAGTGCTAAATAGAGAGCACTAAA
36470687 GTGTTGAATC
Statistics
Matches: 51, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 51 1.00
ACGTcount: A:0.41, C:0.17, G:0.26, T:0.16
Consensus pattern (66 bp):
TAGAGAGCACCGAAGTGCTAAATAGAGAGCACCAAAGTGCTAAATAGAGAGCACTAAAACGCCAA
G
Found at i:36471689 original size:11 final size:11
Alignment explanation
Indices: 36471661--36471692 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
36471651 TATTAATTTA
36471661 TTATAATTAAC
1 TTATAATTAAC
36471672 -T-TAATTAAC
1 TTATAATTAAC
36471681 TTATAATTAAC
1 TTATAATTAAC
36471692 T
1 T
36471693 AAACTTAAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 8 0.42
10 2 0.11
11 9 0.47
ACGTcount: A:0.44, C:0.09, G:0.00, T:0.47
Consensus pattern (11 bp):
TTATAATTAAC
Found at i:36480454 original size:39 final size:39
Alignment explanation
Indices: 36480410--36480488 Score: 131
Period size: 39 Copynumber: 2.0 Consensus size: 39
36480400 AGAAAATTTC
*
36480410 AAATCAAGTTAGGATGATAAAATAGGATTCGTCAACTCG
1 AAATCAAGTTAGGATAATAAAATAGGATTCGTCAACTCG
* *
36480449 AAATCATGTTAGGATAATAAAATAGGATTTGTCAACTCG
1 AAATCAAGTTAGGATAATAAAATAGGATTCGTCAACTCG
36480488 A
1 A
36480489 TTAATTCAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.42, C:0.11, G:0.19, T:0.28
Consensus pattern (39 bp):
AAATCAAGTTAGGATAATAAAATAGGATTCGTCAACTCG
Found at i:36483302 original size:18 final size:18
Alignment explanation
Indices: 36483267--36483302 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
36483257 TAAATAGTTC
*
36483267 AAGTTATTTGAGTTAATT
1 AAGTTATTTGAGTCAATT
*
36483285 AAGTTATTTGGGTCAATT
1 AAGTTATTTGAGTCAATT
36483303 CGAATAAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.31, C:0.03, G:0.19, T:0.47
Consensus pattern (18 bp):
AAGTTATTTGAGTCAATT
Found at i:36485405 original size:22 final size:21
Alignment explanation
Indices: 36485374--36485419 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 21
36485364 TACACCAAAA
*
36485374 TAGGCTTTTAGCGGCGCTTTTT
1 TAGGCCTTTAGCGGCG-TTTTT
36485396 TAGGCCTTTAGCGGCGTTTTT
1 TAGGCCTTTAGCGGCGTTTTT
36485417 TAG
1 TAG
36485420 CGCCGCTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.11, C:0.17, G:0.28, T:0.43
Consensus pattern (21 bp):
TAGGCCTTTAGCGGCGTTTTT
Found at i:36487268 original size:22 final size:19
Alignment explanation
Indices: 36487241--36487312 Score: 54
Period size: 21 Copynumber: 3.4 Consensus size: 19
36487231 AAATGAACCC
*
36487241 AAAAAACTTAAGTACTAAATT
1 AAAAAAATTAA-TAC-AAATT
* *
36487262 AAAAAAATCAAACACCAAATT
1 AAAAAAAT-TAATA-CAAATT
36487283 AAAAAAAATTAATAACAAATT
1 -AAAAAAATTAAT-ACAAATT
36487304 AGAAAAAAT
1 A-AAAAAAT
36487313 AAAATAATTA
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
20 1 0.02
21 28 0.68
22 12 0.29
ACGTcount: A:0.67, C:0.10, G:0.03, T:0.21
Consensus pattern (19 bp):
AAAAAAATTAATACAAATT
Found at i:36487319 original size:22 final size:20
Alignment explanation
Indices: 36487257--36487315 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 20
36487247 CTTAAGTACT
* *
36487257 AAATTAAAAAAATCAAACACC
1 AAATTAAAAAAAT-AAATAAC
*
36487278 AAATTAAAAAAAATTAATAAC
1 AAATT-AAAAAAATAAATAAC
36487299 AAATTAGAAAAAATAAA
1 AAATTA-AAAAAATAAA
36487316 ATAATTAAGA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.03
21 23 0.72
22 8 0.25
ACGTcount: A:0.71, C:0.08, G:0.02, T:0.19
Consensus pattern (20 bp):
AAATTAAAAAAATAAATAAC
Found at i:36487493 original size:5 final size:5
Alignment explanation
Indices: 36487485--36487516 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
36487475 ATAATTATTT
36487485 TTATA TTATA TTATA TTATA TTATA TTATA TT
1 TTATA TTATA TTATA TTATA TTATA TTATA TT
36487517 GATTGGTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (5 bp):
TTATA
Found at i:36490338 original size:7 final size:7
Alignment explanation
Indices: 36490328--36490372 Score: 54
Period size: 7 Copynumber: 6.4 Consensus size: 7
36490318 CACTAACTAT
*
36490328 TAACCTC
1 TAACCCC
36490335 TAACCCC
1 TAACCCC
36490342 TAACCCC
1 TAACCCC
*
36490349 AAACCCC
1 TAACCCC
**
36490356 TAACTAC
1 TAACCCC
36490363 TAACCCC
1 TAACCCC
36490370 TAA
1 TAA
36490373 ACCTTATTTA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.36, C:0.47, G:0.00, T:0.18
Consensus pattern (7 bp):
TAACCCC
Found at i:36490353 original size:21 final size:22
Alignment explanation
Indices: 36490329--36490376 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
36490319 ACTAACTATT
*
36490329 AACCTCTAACCCCTAACCCC-A
1 AACCTCTAACCACTAACCCCTA
* *
36490350 AACCCCTAACTACTAACCCCTA
1 AACCTCTAACCACTAACCCCTA
36490372 AACCT
1 AACCT
36490377 TATTTAATAT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.35, C:0.48, G:0.00, T:0.17
Consensus pattern (22 bp):
AACCTCTAACCACTAACCCCTA
Found at i:36490952 original size:41 final size:41
Alignment explanation
Indices: 36490894--36491089 Score: 234
Period size: 41 Copynumber: 4.8 Consensus size: 41
36490884 AAATATTTTT
** * *
36490894 GCGGCGCAATTTCAAAAACGCTGCTAAAGCCCTAAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* * *
36490935 GCGGCGCTTCTTGAAAAACGCCACTAAAG-CCTGAGCATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTA
* *
36490975 GCGGCGCTTTTTCAAAAACGTCGCTAAAAG-CCTGAGTATTA
1 GCGGCGCTTTTTCAAAAACGCCGCT-AAAGCCCTGAGCATTA
* * * *
36491016 GCGGTGCTTTCTCAAAAACGCCGCTAAAGCTCTGAGTATTA
1 GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTA
*
36491057 GCGGCGCTTTTTCAAAAATGCCGCTAAAAGCCC
1 GCGGCGCTTTTTCAAAAACGCCGCT-AAAGCCC
36491090 CGAAAGGTCG
Statistics
Matches: 132, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
40 35 0.27
41 91 0.69
42 6 0.05
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.23
Consensus pattern (41 bp):
GCGGCGCTTTTTCAAAAACGCCGCTAAAGCCCTGAGCATTA
Found at i:36491033 original size:81 final size:81
Alignment explanation
Indices: 36490894--36491088 Score: 243
Period size: 81 Copynumber: 2.4 Consensus size: 81
36490884 AAATATTTTT
** *
36490894 GCGGCGCAATTTCAAAAACGCTGCT-AAAGCCCTAAGCATTAGCGGCGCTTCTTGAAAAACGCCA
1 GCGGCGCTTTTTCAAAAACGC-GCTAAAAG-CCTAAGCATTAGCGGCGCTTCTTCAAAAACGCCA
36490958 CTAAAGC-CTGAGCATTA
64 CTAAAGCTCTGAGCATTA
* * * *
36490975 GCGGCGCTTTTTCAAAAACGTCGCTAAAAGCCTGAGTATTAGCGGTGCTT-TCTCAAAAACGCCG
1 GCGGCGCTTTTTCAAAAACG-CGCTAAAAGCCTAAGCATTAGCGGCGCTTCT-TCAAAAACGCCA
*
36491039 CTAAAGCTCTGAGTATTA
64 CTAAAGCTCTGAGCATTA
*
36491057 GCGGCGCTTTTTCAAAAATGCCGCTAAAAGCC
1 GCGGCGCTTTTTCAAAAACG-CGCTAAAAGCC
36491089 CCGAAAGGTC
Statistics
Matches: 100, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
80 1 0.01
81 55 0.55
82 44 0.44
ACGTcount: A:0.30, C:0.26, G:0.22, T:0.23
Consensus pattern (81 bp):
GCGGCGCTTTTTCAAAAACGCGCTAAAAGCCTAAGCATTAGCGGCGCTTCTTCAAAAACGCCACT
AAAGCTCTGAGCATTA
Found at i:36491189 original size:39 final size:39
Alignment explanation
Indices: 36491141--36491243 Score: 107
Period size: 40 Copynumber: 2.6 Consensus size: 39
36491131 AAAAAACGCT
* * *
36491141 GCTAATGCTCATTTTTGGCGGCGCTTTCCTGGAAGCGCC
1 GCTAATGCTCATTTTTAGCGGCGCTTTACTGAAAGCGCC
* * * * *
36491180 GCTAATGCTCGGTCTTTAGCGGCGTTTTATTTAAAGCGCC
1 GCTAATGCTC-ATTTTTAGCGGCGCTTTACTGAAAGCGCC
*
36491220 GCTAATGCTTGATTTTTAGCGGCG
1 GCTAATGC-TCATTTTTAGCGGCG
36491244 TTTTTTGTCC
Statistics
Matches: 51, Mismatches: 11, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
39 10 0.20
40 40 0.78
41 1 0.02
ACGTcount: A:0.16, C:0.23, G:0.27, T:0.34
Consensus pattern (39 bp):
GCTAATGCTCATTTTTAGCGGCGCTTTACTGAAAGCGCC
Found at i:36495021 original size:21 final size:21
Alignment explanation
Indices: 36494997--36495045 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
36494987 CCCCTAAAAA
**
36494997 TTTTCCCCAAATCCCTTATTT
1 TTTTCCCCAAATCCCTTAGAT
36495018 TTTTCCCCAAATCCCTTAGAT
1 TTTTCCCCAAATCCCTTAGAT
36495039 TTTTCCC
1 TTTTCCC
36495046 AACCGTCTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.18, C:0.35, G:0.02, T:0.45
Consensus pattern (21 bp):
TTTTCCCCAAATCCCTTAGAT
Found at i:36499874 original size:43 final size:41
Alignment explanation
Indices: 36499826--36499963 Score: 134
Period size: 43 Copynumber: 3.2 Consensus size: 41
36499816 TTTGATATGG
*
36499826 TCTTTAGCAGCGCTTCTACTAAAAACACTGCTATAGAACATGA
1 TCTTTAGC-GCGCTTCT-CTAAAAACACTGCTAAAGAACATGA
* ** *
36499869 TCTTTAGCGGCGCTTCTTGTAAAAATGCTGCTAAATAACATGA
1 TCTTTAGC-GCGCTTC-TCTAAAAACACTGCTAAAGAACATGA
* * *
36499912 TTTTTAGCGACGCTTCTCATAAAAACGA-TGCTAAAGATCATGT
1 TCTTTAGCG-CGCTTCTC-TAAAAAC-ACTGCTAAAGAACATGA
36499955 TCTTTAGCG
1 TCTTTAGCG
36499964 GCGTTTGTAG
Statistics
Matches: 77, Mismatches: 14, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
42 2 0.03
43 74 0.96
44 1 0.01
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (41 bp):
TCTTTAGCGCGCTTCTCTAAAAACACTGCTAAAGAACATGA
Found at i:36499988 original size:86 final size:87
Alignment explanation
Indices: 36499826--36500006 Score: 192
Period size: 86 Copynumber: 2.1 Consensus size: 87
36499816 TTTGATATGG
* * *
36499826 TCTTTAGC-AGCGCTTCTACTAAAAACACTGCTATAGAACATGATCTTTAGCGGCGCTTCTTGTA
1 TCTTTAGCGAGCGCTTCTACTAAAAACACTGCTAAAGAACATGATCTTTAGCGGCGCTTCTAGGA
* *
36499890 AAAATGCTGCTAAATAACATGAT
66 AAAATGCCGCTAAAGAACATG-T
* * * *
36499913 T-TTTAGCGA-CGCTTCT-CATAAAAACGA-TGCTAAAGATCATGTTCTTTAGCGGCGTTTGTAG
1 TCTTTAGCGAGCGCTTCTAC-TAAAAAC-ACTGCTAAAGAACATGATCTTTAGCGGCGCTTCTAG
* * *
36499974 GAGAAGTGCCGCTAAAGATCATGT
64 GAAAAATGCCGCTAAAGAACATGT
36499998 TCTTTAGCG
1 TCTTTAGCG
36500007 GCATTTTTAG
Statistics
Matches: 78, Mismatches: 12, Indels: 9
0.79 0.12 0.09
Matches are distributed among these distances:
85 3 0.04
86 72 0.92
87 3 0.04
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.31
Consensus pattern (87 bp):
TCTTTAGCGAGCGCTTCTACTAAAAACACTGCTAAAGAACATGATCTTTAGCGGCGCTTCTAGGA
AAAATGCCGCTAAAGAACATGT
Found at i:36500057 original size:43 final size:43
Alignment explanation
Indices: 36499941--36500057 Score: 173
Period size: 43 Copynumber: 2.7 Consensus size: 43
36499931 TAAAAACGAT
* *
36499941 GCTAAAGATCATGTTCTTTAGCGGCGTTTGTAGGAGAAGTGCC
1 GCTAAAGATCATGTTCTTTAGCGGCGTTTTTAGGAGAAGTACC
*
36499984 GCTAAAGATCATGTTCTTTAGCGGCATTTTTAGGAGAA-TCACC
1 GCTAAAGATCATGTTCTTTAGCGGCGTTTTTAGGAGAAGT-ACC
* *
36500027 GCTAAAGGTCATGTTCTTTAGCGGTGTTTTT
1 GCTAAAGATCATGTTCTTTAGCGGCGTTTTT
36500058 CCACATAAAT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
42 1 0.01
43 66 0.99
ACGTcount: A:0.23, C:0.16, G:0.26, T:0.35
Consensus pattern (43 bp):
GCTAAAGATCATGTTCTTTAGCGGCGTTTTTAGGAGAAGTACC
Found at i:36502919 original size:11 final size:11
Alignment explanation
Indices: 36502905--36502948 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
36502895 AGATAAATAT
36502905 TATTTTATTAA
1 TATTTTATTAA
*
36502916 TATTTTAATGAGA
1 TATTTT-ATTA-A
*
36502929 TATTTTATTAT
1 TATTTTATTAA
36502940 TATTTTATT
1 TATTTTATT
36502949 TAGTATAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 15 0.54
12 6 0.21
13 7 0.25
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:36517736 original size:43 final size:43
Alignment explanation
Indices: 36517689--36517833 Score: 209
Period size: 43 Copynumber: 3.3 Consensus size: 43
36517679 ATCCAAACTT
* *
36517689 TTATGTAAGTTATGATATGATTTATAGTTATGTATTATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAG
*
36517732 TTATGTAAGTTATAATATGATATATATTTATGTAAGTTATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGT-A-TTATGTAAG
* * *
36517777 TAATGTAATTTATGATATGATATATATTTATGTATAATGTAAG
1 TTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAG
*
36517820 TTCTGTAAGTTATG
1 TTATGTAAGTTATG
36517834 TAAATTATGA
Statistics
Matches: 90, Mismatches: 10, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
43 49 0.54
44 2 0.02
45 39 0.43
ACGTcount: A:0.35, C:0.01, G:0.17, T:0.48
Consensus pattern (43 bp):
TTATGTAAGTTATGATATGATATATATTTATGTATTATGTAAG
Found at i:36517737 original size:9 final size:9
Alignment explanation
Indices: 36517714--36517842 Score: 72
Period size: 9 Copynumber: 14.8 Consensus size: 9
36517704 TATGATTTAT
36517714 AGTTATGT-
1 AGTTATGTA
36517722 A-TTATGTA
1 AGTTATGTA
36517730 AGTTATGTA
1 AGTTATGTA
*
36517739 AGTTATAATA
1 AGTTAT-GTA
* * *
36517749 TGATATAT-
1 AGTTATGTA
*
36517757 ATTTATGTA
1 AGTTATGTA
36517766 AGTTATGTA
1 AGTTATGTA
*
36517775 AGTAATGTA
1 AGTTATGTA
*
36517784 ATTTATGATA
1 AGTTATG-TA
* * *
36517794 TGATATAT-
1 AGTTATGTA
*
36517802 ATTTATGT-
1 AGTTATGTA
*
36517810 A-TAATGTA
1 AGTTATGTA
*
36517818 AGTTCTGTA
1 AGTTATGTA
36517827 AGTTATGTA
1 AGTTATGTA
*
36517836 AATTATG
1 AGTTATG
36517843 ATCCAAATTT
Statistics
Matches: 90, Mismatches: 24, Indels: 13
0.71 0.19 0.10
Matches are distributed among these distances:
7 11 0.12
8 12 0.13
9 56 0.62
10 11 0.12
ACGTcount: A:0.36, C:0.01, G:0.16, T:0.47
Consensus pattern (9 bp):
AGTTATGTA
Found at i:36517773 original size:52 final size:51
Alignment explanation
Indices: 36517713--36517841 Score: 137
Period size: 45 Copynumber: 2.6 Consensus size: 51
36517703 ATATGATTTA
*
36517713 TAGTTATGTATTATGTAAGTTATGTAAGTTATAATATGATATATATTTATG
1 TAGTTATGTATTATGTAAGTTATGTAAATTATAATATGATATATATTTATG
* * *
36517764 TA---A-G--TTATGTAAGTAATGTAATTTATGATATGATATATATTTATG
1 TAGTTATGTATTATGTAAGTTATGTAAATTATAATATGATATATATTTATG
* *
36517809 TA-TAATGTAAGTTCTGTAAGTTATGTAAATTAT
1 TAGTTATGT-A-TTATGTAAGTTATGTAAATTAT
36517842 GATCCAAATT
Statistics
Matches: 65, Mismatches: 6, Indels: 13
0.77 0.07 0.15
Matches are distributed among these distances:
45 40 0.62
47 2 0.03
48 2 0.03
51 2 0.03
52 19 0.29
ACGTcount: A:0.36, C:0.01, G:0.16, T:0.47
Consensus pattern (51 bp):
TAGTTATGTATTATGTAAGTTATGTAAATTATAATATGATATATATTTATG
Found at i:36517888 original size:53 final size:53
Alignment explanation
Indices: 36517823--36517939 Score: 207
Period size: 53 Copynumber: 2.2 Consensus size: 53
36517813 ATGTAAGTTC
* *
36517823 TGTAAGTTATGTAAATTATGATCCAAATTTTTTTTTTATTTTTTAAATGTTTA
1 TGTAAGTTATGTAAATTATGATCCAAAGTTTTTTTTTATTCTTTAAATGTTTA
*
36517876 TGTAAGTTATGTAAATTATGATCCAAAGTTTTTTTTTATTCTTTAAATGTTTT
1 TGTAAGTTATGTAAATTATGATCCAAAGTTTTTTTTTATTCTTTAAATGTTTA
36517929 TGTAAGTTATG
1 TGTAAGTTATG
36517940 ATTATCATCT
Statistics
Matches: 61, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
53 61 1.00
ACGTcount: A:0.29, C:0.04, G:0.12, T:0.55
Consensus pattern (53 bp):
TGTAAGTTATGTAAATTATGATCCAAAGTTTTTTTTTATTCTTTAAATGTTTA
Found at i:36518990 original size:72 final size:71
Alignment explanation
Indices: 36518913--36519131 Score: 219
Period size: 72 Copynumber: 3.1 Consensus size: 71
36518903 AAATGGTTCC
* * *
36518913 ACTTAATATCAGAACTCAATAAGTTGAACTAAATTAAACTTTTTAAAAATTCATAATTGAACAAA
1 ACTTAATATCA-AACTCAATAAATTGAACTAAATTAAACTTTTTAAAAATTCATAATTAAATAAA
*
36518978 CGTTTTT
65 CGATTTT
* ** * * * *
36518985 ACTTAATATCAAATTTCAATAAATCAAACTAAATTAAGC-TTCTGAAAATGT-ATAACTAAATAA
1 ACTTAATATCAAA-CTCAATAAATTGAACTAAATTAAACTTTTTAAAAAT-TCATAATTAAATAA
* *
36519048 ACGGTTTC
64 ACGATTTT
* * **
36519056 GCTTAATATCAAAACTTAATAAATTGAACTAAATT-AACATTTTTAAAAACACATAATTAAATAA
1 ACTTAATATC-AAACTCAATAAATTGAACTAAATTAAAC-TTTTTAAAAATTCATAATTAAATAA
36519120 ACGATTTT
64 ACGATTTT
36519128 ACTT
1 ACTT
36519132 GATAATTAAT
Statistics
Matches: 115, Mismatches: 26, Indels: 12
0.75 0.17 0.08
Matches are distributed among these distances:
70 2 0.02
71 51 0.44
72 62 0.54
ACGTcount: A:0.47, C:0.13, G:0.06, T:0.35
Consensus pattern (71 bp):
ACTTAATATCAAACTCAATAAATTGAACTAAATTAAACTTTTTAAAAATTCATAATTAAATAAAC
GATTTT
Found at i:36521954 original size:25 final size:25
Alignment explanation
Indices: 36521920--36521967 Score: 80
Period size: 25 Copynumber: 1.9 Consensus size: 25
36521910 GGATAGGATT
36521920 TTGTTAAATGAAATGAA-AAAAATAA
1 TTGTTAAATGAAAT-AATAAAAATAA
36521945 TTGTTAAATGAAATAATAAAAAT
1 TTGTTAAATGAAATAATAAAAAT
36521968 TGAGCTAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 2 0.09
25 20 0.91
ACGTcount: A:0.58, C:0.00, G:0.10, T:0.31
Consensus pattern (25 bp):
TTGTTAAATGAAATAATAAAAATAA
Found at i:36522249 original size:21 final size:22
Alignment explanation
Indices: 36522223--36522267 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
36522213 GTCGTGGAAA
36522223 GATTTGGGGAATAA-ATTTA-GG
1 GATTTGGGGAA-AATATTTACGG
36522244 GATTTGGGGAAAATATTTACGG
1 GATTTGGGGAAAATATTTACGG
36522266 GA
1 GA
36522268 AAAAATAAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 2 0.09
21 16 0.73
22 4 0.18
ACGTcount: A:0.33, C:0.02, G:0.33, T:0.31
Consensus pattern (22 bp):
GATTTGGGGAAAATATTTACGG
Found at i:36527193 original size:28 final size:28
Alignment explanation
Indices: 36527147--36527423 Score: 333
Period size: 28 Copynumber: 9.9 Consensus size: 28
36527137 AACACGTCGA
* * *
36527147 GAAAGAATGAGCCTCTGTGACGAACTAT
1 GAAAGAATAAGCCTTTGTGGCGAACTAT
*
36527175 GAAAGAATAAGTCTTTGTGGCGAACTAT
1 GAAAGAATAAGCCTTTGTGGCGAACTAT
* * *
36527203 GAAAGAATAAGTCTTTGTGGTGAAGTAT
1 GAAAGAATAAGCCTTTGTGGCGAACTAT
* ** *
36527231 GAAATAATAAGCCTTTGTGGAAAACTAC
1 GAAAGAATAAGCCTTTGTGGCGAACTAT
* *
36527259 GAAAGAATAAGCCTTTGTGGTGAACTAC
1 GAAAGAATAAGCCTTTGTGGCGAACTAT
* *
36527287 GAAAGAATAAGCCTTTGTGGCAAACTAC
1 GAAAGAATAAGCCTTTGTGGCGAACTAT
* *
36527315 GAAAGAATAAGCCTTTGTGGTGAACTAC
1 GAAAGAATAAGCCTTTGTGGCGAACTAT
*
36527343 GAAAGAATAAGCCTTTGTGGTGAACTAT
1 GAAAGAATAAGCCTTTGTGGCGAACTAT
*
36527371 GAAAGAATAAG-CTTTGTTGGCAAACTAT
1 GAAAGAATAAGCCTTTG-TGGCGAACTAT
* * *
36527399 GAAAG-ATTAGCTTTTGTGGTGAACT
1 GAAAGAATAAGCCTTTGTGGCGAACT
36527424 CTGTATGAAG
Statistics
Matches: 221, Mismatches: 26, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
27 16 0.07
28 205 0.93
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.27
Consensus pattern (28 bp):
GAAAGAATAAGCCTTTGTGGCGAACTAT
Found at i:36530853 original size:79 final size:81
Alignment explanation
Indices: 36530717--36530901 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
36530707 TTGAATGATG
* *
36530717 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
36530781 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
36530796 TTCCGGGCTAAG-CCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
36530858 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
36530876 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
36530902 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.64
80 32 0.35
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:36530915 original size:40 final size:40
Alignment explanation
Indices: 36530718--36530901 Score: 198
Period size: 40 Copynumber: 4.6 Consensus size: 40
36530708 TGAATGATGT
* * * *
36530718 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
36530758 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
36530798 CCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
36530836 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
36530877 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
36530902 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 15, Indels: 14
0.81 0.10 0.09
Matches are distributed among these distances:
39 34 0.28
40 78 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:36530923 original size:79 final size:79
Alignment explanation
Indices: 36530770--36530924 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
36530760 GGACTAAGAT
* * ***
36530770 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGTGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
36530835 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
36530849 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
*
36530912 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
36530925 ATTTCGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.60
80 24 0.37
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:36535119 original size:29 final size:30
Alignment explanation
Indices: 36535087--36535168 Score: 82
Period size: 29 Copynumber: 2.8 Consensus size: 30
36535077 GGCACTAGTT
*
36535087 ATCGATGATTACAGTTCCAGGTACT-T-TGC
1 ATCG-TGATTACAGTTTCAGGTACTCTATGC
* *
36535116 ATCGGTG-TTATAGTTTCAGGCACTCTATGC
1 ATC-GTGATTACAGTTTCAGGTACTCTATGC
*
36535146 -TAGTGATTACAGTTTCAGGTACT
1 ATCGTGATTACAGTTTCAGGTACT
36535169 ATGTACTGGT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
28 17 0.40
29 22 0.51
30 4 0.09
ACGTcount: A:0.23, C:0.18, G:0.22, T:0.37
Consensus pattern (30 bp):
ATCGTGATTACAGTTTCAGGTACTCTATGC
Found at i:36535180 original size:29 final size:29
Alignment explanation
Indices: 36535092--36535181 Score: 76
Period size: 29 Copynumber: 3.1 Consensus size: 29
36535082 TAGTTATCGA
* * *
36535092 TGATTACAGTTCCAGGTACTTTGCA-TCGG
1 TGATTACAGTTTCAGGTACTATGTACT-GG
* * * * * *
36535121 TG-TTATAGTTTCAGGCACTCTATGCTAG
1 TGATTACAGTTTCAGGTACTATGTACTGG
36535149 TGATTACAGTTTCAGGTACTATGTACTGG
1 TGATTACAGTTTCAGGTACTATGTACTGG
36535178 TGAT
1 TGAT
36535182 GGATACCGTA
Statistics
Matches: 45, Mismatches: 14, Indels: 4
0.71 0.22 0.06
Matches are distributed among these distances:
28 18 0.40
29 27 0.60
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.38
Consensus pattern (29 bp):
TGATTACAGTTTCAGGTACTATGTACTGG
Found at i:36551176 original size:18 final size:18
Alignment explanation
Indices: 36551155--36551193 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
36551145 ATTTGAACTC
36551155 AAGCTTTTACTTACATCA
1 AAGCTTTTACTTACATCA
36551173 AAGCTTTTACTTACATCA
1 AAGCTTTTACTTACATCA
36551191 AAG
1 AAG
36551194 TATACGAGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (18 bp):
AAGCTTTTACTTACATCA
Found at i:36553546 original size:20 final size:20
Alignment explanation
Indices: 36553504--36553589 Score: 91
Period size: 20 Copynumber: 4.2 Consensus size: 20
36553494 GCATCATAGA
**
36553504 TGCATAACAGGGGCACCGTAG
1 TGCA-AACAGGGGCACCAAAG
* *
36553525 TGCGAACAGGGACACCAAAG
1 TGCAAACAGGGGCACCAAAG
* *
36553545 TGTATACAGGGGCACCAAAG
1 TGCAAACAGGGGCACCAAAG
* *
36553565 TGCAAATAGGGGCATCAAAG
1 TGCAAACAGGGGCACCAAAG
36553585 TGCAA
1 TGCAA
36553590 GTCTTGTACA
Statistics
Matches: 53, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
20 50 0.94
21 3 0.06
ACGTcount: A:0.36, C:0.21, G:0.30, T:0.13
Consensus pattern (20 bp):
TGCAAACAGGGGCACCAAAG
Found at i:36557078 original size:14 final size:14
Alignment explanation
Indices: 36557059--36557087 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
36557049 GGCTTTTTCC
36557059 ATGGTTAACAACTA
1 ATGGTTAACAACTA
36557073 ATGGTTAACAACTA
1 ATGGTTAACAACTA
36557087 A
1 A
36557088 CATGTCCTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.45, C:0.14, G:0.14, T:0.28
Consensus pattern (14 bp):
ATGGTTAACAACTA
Found at i:36558324 original size:38 final size:38
Alignment explanation
Indices: 36558256--36558347 Score: 98
Period size: 38 Copynumber: 2.4 Consensus size: 38
36558246 GGTACACAGA
* * * *
36558256 CACGAAGCTTGCTAGGCATCAAGCCTGATAAAG-ACTGG
1 CACGAAGCATGCTAGGCATCAAACCCGAT-AAGCACTAG
36558294 CACGAAGCATGCTAGGC-TCAAAACCCGATAAGTCACTAG
1 CACGAAGCATGCTAGGCATC-AAACCCGATAAG-CACTAG
*
36558333 CACGAAGCCTGCTAG
1 CACGAAGCATGCTAG
36558348 TCTTAAATCT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
37 5 0.11
38 23 0.50
39 18 0.39
ACGTcount: A:0.33, C:0.27, G:0.24, T:0.16
Consensus pattern (38 bp):
CACGAAGCATGCTAGGCATCAAACCCGATAAGCACTAG
Found at i:36558346 original size:39 final size:39
Alignment explanation
Indices: 36558293--36558392 Score: 119
Period size: 39 Copynumber: 2.6 Consensus size: 39
36558283 ATAAAGACTG
*
36558293 GCACGAAGCATGCTAGGCTCAAAACCCGATAAGTCACTA
1 GCACGAAGCCTGCTAGGCTCAAAACCCGATAAGTCACTA
* * * *
36558332 GCACGAAGCCTGCTAGTCTTAAATCTCGATAAGTCACTA
1 GCACGAAGCCTGCTAGGCTCAAAACCCGATAAGTCACTA
* * **
36558371 ACACGAGGCCTATTAGGCTCAA
1 GCACGAAGCCTGCTAGGCTCAA
36558393 GGCCTAATAC
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 50 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (39 bp):
GCACGAAGCCTGCTAGGCTCAAAACCCGATAAGTCACTA
Found at i:36562630 original size:39 final size:39
Alignment explanation
Indices: 36562536--36562712 Score: 173
Period size: 39 Copynumber: 4.6 Consensus size: 39
36562526 ACATGTTTTA
36562536 AGTATTGTGATATATGCTTAAATGTTATG-AGATT-TATG
1 AGTATTGTGATATATGCTTAAATGTTATGTA-ATTATATG
* * *
36562574 TA-TATTGTGATATATGCTTGAGTATTATGTAATTATATG
1 -AGTATTGTGATATATGCTTAAATGTTATGTAATTATATG
* * * *
36562613 AGTATTGTAATATATGCTCAAATGTTATGTGATTATATA
1 AGTATTGTGATATATGCTTAAATGTTATGTAATTATATG
** * *
36562652 AGTATTGTGATATATGCTTGGATGTTAGGTGATTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTAATTATATG
***
36562691 TA-TAACATGATATATGCTTAAA
1 -AGTATTGTGATATATGCTTAAA
36562713 AGTGAATATG
Statistics
Matches: 113, Mismatches: 21, Indels: 8
0.80 0.15 0.06
Matches are distributed among these distances:
38 28 0.25
39 84 0.74
40 1 0.01
ACGTcount: A:0.33, C:0.04, G:0.19, T:0.44
Consensus pattern (39 bp):
AGTATTGTGATATATGCTTAAATGTTATGTAATTATATG
Found at i:36566907 original size:43 final size:43
Alignment explanation
Indices: 36566855--36567073 Score: 255
Period size: 43 Copynumber: 5.1 Consensus size: 43
36566845 AAATATGCCG
*
36566855 CTAAAGAACATGACCTTTAGCGGCGCTTTTATCAAAAACGCCT
1 CTAAAGAACATGACCTTTAGCGGCGCTTTTATCACAAACGCCT
* * * *
36566898 CTAGAGAACATGACCTTTAGCGGCGCTTTT-TTACAAACACCA
1 CTAAAGAACATGACCTTTAGCGGCGCTTTTATCACAAACGCCT
* *
36566940 CTAAAGAACATGACATTTAGCGGCGCTTTTATCACAAACGCCA
1 CTAAAGAACATGACCTTTAGCGGCGCTTTTATCACAAACGCCT
* * * ** *
36566983 CCATAGAGA-ATGACTTTTAGCGGCTTTTTTTTCACAAACG-CT
1 CTAAAGA-ACATGACCTTTAGCGGCGCTTTTATCACAAACGCCT
* * *
36567025 GCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAATGCCG
1 -CTAAAGAACATGACCTTTAGCGGCGCTTTTATCACAAACGCCT
36567069 CTAAA
1 CTAAA
36567074 AGTACTGTTC
Statistics
Matches: 146, Mismatches: 25, Indels: 10
0.81 0.14 0.06
Matches are distributed among these distances:
42 38 0.26
43 106 0.73
44 2 0.01
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
CTAAAGAACATGACCTTTAGCGGCGCTTTTATCACAAACGCCT
Found at i:36566996 original size:85 final size:85
Alignment explanation
Indices: 36566855--36567063 Score: 280
Period size: 85 Copynumber: 2.4 Consensus size: 85
36566845 AAATATGCCG
* *
36566855 CTAAAGAACATGACCTTTAGCGGCGCTTTTATCAAAAACGCCTCTAGAGAACATGACCTTTAGCG
1 CTAAAGAACATGA-CTTTAGCGGCGCTTTTATCACAAACGCCCCTAGAGAACATGACCTTTAGCG
36566920 GCGCTTTTTT-ACAAACACCA
65 GCGCTTTTTTCACAAACACCA
*
36566940 CTAAAGAACATGACATTTAGCGGCGCTTTTATCACAAACGCCACCATAGAG-A-ATGACTTTTAG
1 CTAAAGAACATGAC-TTTAGCGGCGCTTTTATCACAAACGCC-CC-TAGAGAACATGACCTTTAG
** * **
36567003 CGGCTTTTTTTTCACAAACGCTG
63 CGGCGCTTTTTTCACAAACACCA
36567026 CTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAA
1 CTAAAGAACATGA-CTTTAGCGGCGCTTTTATCACAAA
36567064 TGCCGCTAAA
Statistics
Matches: 111, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
84 1 0.01
85 59 0.53
86 45 0.41
87 6 0.05
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.28
Consensus pattern (85 bp):
CTAAAGAACATGACTTTAGCGGCGCTTTTATCACAAACGCCCCTAGAGAACATGACCTTTAGCGG
CGCTTTTTTCACAAACACCA
Found at i:36567088 original size:86 final size:82
Alignment explanation
Indices: 36566852--36567090 Score: 255
Period size: 85 Copynumber: 2.8 Consensus size: 82
36566842 TGAAAATATG
* *
36566852 CCGCTAAAGAACATGACCTTTAGCGGCGCTTTTATCAAAAACGCCTCT-AGAGAACATGACCTTT
1 CCGCTAAAGAACATGA-CTTTAGCGGCGCTTTTATCACAAACGCCACTAAGAG-AC-TGA-CTTT
36566916 AGCGGCGCTTTTTTACAAACA
62 AGCGGCGCTTTTTTACAAACA
* * *
36566937 CCACTAAAGAACATGACATTTAGCGGCGCTTTTATCACAAACGCCACCATAGAGAATGACTTTTA
1 CCGCTAAAGAACATGAC-TTTAGCGGCGCTTTTATCACAAACGCCACTA-AGAGACTGAC-TTTA
** *
36567002 GCGGCTTTTTTTTCACAAACG
63 GCGGCGCTTTTTT-ACAAACA
* * * * *
36567023 CTGCTAAAGAACATGATCTTTAGCGGCGCTTTTATCACAAATGCCGCTAAAAGTACTGTTCTTTA
1 CCGCTAAAGAACATGA-CTTTAGCGGCGCTTTTATCACAAACGCCACTAAGAG-ACTG-ACTTTA
36567088 GCG
63 GCG
36567091 ACGTTTATGA
Statistics
Matches: 130, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
84 2 0.02
85 63 0.48
86 59 0.45
87 6 0.05
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (82 bp):
CCGCTAAAGAACATGACTTTAGCGGCGCTTTTATCACAAACGCCACTAAGAGACTGACTTTAGCG
GCGCTTTTTTACAAACA
Found at i:36568085 original size:21 final size:22
Alignment explanation
Indices: 36568061--36568109 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 22
36568051 TTTTGTCAGA
36568061 TTCAACTGTTCT-AATGAATTC
1 TTCAACTGTTCTAAATGAATTC
36568082 TTCAACTGTTCTAGAATGAATTC
1 TTCAACTGTTCTA-AATGAATTC
36568105 TTCAA
1 TTCAA
36568110 TTACCTCCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 12 0.46
23 14 0.54
ACGTcount: A:0.31, C:0.18, G:0.10, T:0.41
Consensus pattern (22 bp):
TTCAACTGTTCTAAATGAATTC
Found at i:36570551 original size:11 final size:11
Alignment explanation
Indices: 36570531--36570573 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
36570521 AGATAAATGT
*
36570531 TATTTAATTAA
1 TATTTTATTAA
36570542 TATTTTATTAA
1 TATTTTATTAA
* *
36570553 TATTTTTAGTAT
1 TA-TTTTATTAA
36570565 TATTTTATT
1 TATTTTATT
36570574 GTTAAATGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:36573266 original size:50 final size:50
Alignment explanation
Indices: 36573165--36573352 Score: 205
Period size: 50 Copynumber: 3.6 Consensus size: 50
36573155 TATGAGCTAG
** *
36573165 TGTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAAATTATGAGAGGTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGC---ACCG--A-GATGAGAGGTCCCA
* *
36573221 TGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCC
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* * * **
36573271 CGTAAGACCATGTCTGGGACATGGCATGGGCACCGATATGAGAACTCCCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
* * *
36573321 TGTAAGACCATATTTGGGATATGGCATTGGCA
1 TGTAAGACCATGTCTGGGACATGGCATTGGCA
36573353 GTACAGGAAA
Statistics
Matches: 115, Mismatches: 17, Indels: 6
0.83 0.12 0.04
Matches are distributed among these distances:
50 82 0.71
51 1 0.01
53 2 0.02
56 30 0.26
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (50 bp):
TGTAAGACCATGTCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCA
Found at i:36573328 original size:100 final size:103
Alignment explanation
Indices: 36573166--36573352 Score: 245
Period size: 100 Copynumber: 1.8 Consensus size: 103
36573156 ATGAGCTAGT
* ** **
36573166 GTAAGACCATGTCTGGGACATGGCATTGGCATTATTGAAATTATGAGAGGTCCCATGTAAGACCA
1 GTAAGACCATGTCTGGGACATGGCATGGGC--TACCG-AATTATGAGAACTCCCATGTAAGACCA
* *
36573231 TGTCTGGGACATGGCGTTGGCACCGAGATGAGAGGTCCCCC
63 TATCTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCC
36573272 GTAAGACCATGTCTGGGACATGGCATGGGC-ACCG-A-TATGAGAACTCCCATGTAAGACCATAT
1 GTAAGACCATGTCTGGGACATGGCATGGGCTACCGAATTATGAGAACTCCCATGTAAGACCATAT
* *
36573334 TTGGGATATGGCATTGGCA
66 CTGGGACATGGCATTGGCA
36573353 GTACAGGAAA
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
100 40 0.56
101 1 0.01
103 2 0.03
106 29 0.40
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (103 bp):
GTAAGACCATGTCTGGGACATGGCATGGGCTACCGAATTATGAGAACTCCCATGTAAGACCATAT
CTGGGACATGGCATTGGCACCGAGATGAGAGGTCCCCC
Found at i:36575303 original size:11 final size:11
Alignment explanation
Indices: 36575283--36575325 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
36575273 AGATAAATGT
*
36575283 TATTTAATTAA
1 TATTTTATTAA
36575294 TATTTTATTAA
1 TATTTTATTAA
* *
36575305 TATTTTTAGTAT
1 TA-TTTTATTAA
36575317 TATTTTATT
1 TATTTTATT
36575326 GTTAAATGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
11 18 0.67
12 9 0.33
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:36577774 original size:21 final size:21
Alignment explanation
Indices: 36577715--36577774 Score: 68
Period size: 21 Copynumber: 2.9 Consensus size: 21
36577705 AAATTATGGT
36577715 TATTATGTTATCTTTAAATCA
1 TATTATGTTATCTTTAAATCA
** **
36577736 TA-TAACTTATACGATAAATCA
1 TATTATGTTAT-CTTTAAATCA
36577757 TATTATGTTATCTTTAAA
1 TATTATGTTATCTTTAAA
36577775 GTACCATAAT
Statistics
Matches: 29, Mismatches: 8, Indels: 4
0.71 0.20 0.10
Matches are distributed among these distances:
20 6 0.21
21 17 0.59
22 6 0.21
ACGTcount: A:0.38, C:0.10, G:0.05, T:0.47
Consensus pattern (21 bp):
TATTATGTTATCTTTAAATCA
Found at i:36579155 original size:40 final size:40
Alignment explanation
Indices: 36579110--36579199 Score: 110
Period size: 40 Copynumber: 2.2 Consensus size: 40
36579100 TAAGAAACTT
* * * *
36579110 ATTTGGGAATAGAATAACTTGGGGGAAATTGGG-GAAAATA
1 ATTTGGGAA-ACAATAAATTGAGGGAAATTGGGAGAAAAGA
*
36579150 ATTTGGGGAACAATAAATTGAGGGAAATTGGGAGAAAAGA
1 ATTTGGGAAACAATAAATTGAGGGAAATTGGGAGAAAAGA
*
36579190 AGTTGGGAAA
1 ATTTGGGAAA
36579200 TTGGGTAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
39 20 0.48
40 22 0.52
ACGTcount: A:0.42, C:0.02, G:0.33, T:0.22
Consensus pattern (40 bp):
ATTTGGGAAACAATAAATTGAGGGAAATTGGGAGAAAAGA
Found at i:36579174 original size:16 final size:14
Alignment explanation
Indices: 36579135--36579176 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
36579125 AACTTGGGGG
36579135 AAATTGGGGAAAAT
1 AAATTGGGGAAAAT
*
36579149 AATTTGGGGAACAAT
1 AAATTGGGGAA-AAT
36579164 AAATTGAGGGAAA
1 AAATTG-GGGAAA
36579177 TTGGGAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 10 0.42
15 9 0.38
16 5 0.21
ACGTcount: A:0.48, C:0.02, G:0.29, T:0.21
Consensus pattern (14 bp):
AAATTGGGGAAAAT
Found at i:36580197 original size:7 final size:7
Alignment explanation
Indices: 36580185--36580382 Score: 69
Period size: 7 Copynumber: 27.9 Consensus size: 7
36580175 ACTAATTAAT
36580185 CTAAACC
1 CTAAACC
36580192 CTAAACCC
1 CTAAA-CC
36580200 CTAAACC
1 CTAAACC
*
36580207 CT-ATCC
1 CTAAACC
*
36580213 TTTAAACC
1 -CTAAACC
* *
36580221 CTGAATC
1 CTAAACC
* *
36580228 ATAAAAC
1 CTAAACC
*
36580235 ATAAACC
1 CTAAACC
*
36580242 ATAAACC
1 CTAAACC
*
36580249 CTAAATC
1 CTAAACC
* *
36580256 TTTAACC
1 CTAAACC
36580263 CTTAAACC
1 C-TAAACC
*
36580271 TTAAACC
1 CTAAACC
**
36580278 CTAATGC
1 CTAAACC
*
36580285 TTAAACC
1 CTAAACC
*
36580292 ATAAACC
1 CTAAACC
*
36580299 ATAAACC
1 CTAAACC
* *
36580306 ATAATCC
1 CTAAACC
36580313 CTAAACC
1 CTAAACC
*
36580320 CATAATCC
1 C-TAAACC
* *
36580328 ATAAACT
1 CTAAACC
*
36580335 TTAAA--
1 CTAAACC
* *
36580340 ATAGTAACT
1 CTA--AACC
*
36580349 TTAAACC
1 CTAAACC
*
36580356 TTAAACC
1 CTAAACC
36580363 CTAAACC
1 CTAAACC
*
36580370 ATAAACC
1 CTAAACC
36580377 CTAAAC
1 CTAAAC
36580383 TATAATGATA
Statistics
Matches: 143, Mismatches: 39, Indels: 18
0.71 0.19 0.09
Matches are distributed among these distances:
5 2 0.01
6 3 0.02
7 116 0.81
8 20 0.14
9 2 0.01
ACGTcount: A:0.44, C:0.30, G:0.02, T:0.24
Consensus pattern (7 bp):
CTAAACC
Found at i:36580333 original size:57 final size:57
Alignment explanation
Indices: 36580186--36580333 Score: 151
Period size: 57 Copynumber: 2.6 Consensus size: 57
36580176 CTAATTAATC
* *
36580186 TAAACCCTAAACCCCTAAACCCT-ATCCTTTAAACCCTGAATCATAAAACATAAACCA
1 TAAACCATAAATCCCTAAACCCTAATCC-TTAAACCCTGAATCATAAAACATAAACCA
* * * * * *
36580243 TAAACCCTAAAT-CTTTAACCCTTAAACCTTAAACCCT-AATGCTTAAACCATAAACCA
1 TAAACCATAAATCCCTAAACCC-TAATCCTTAAACCCTGAAT-CATAAAACATAAACCA
*
36580300 TAAACCAT-AATCCCTAAACCCATAATCCATAAAC
1 TAAACCATAAATCCCTAAACCC-TAATCCTTAAAC
36580334 TTTAAAATAG
Statistics
Matches: 75, Mismatches: 12, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
56 13 0.17
57 59 0.79
58 3 0.04
ACGTcount: A:0.44, C:0.32, G:0.01, T:0.23
Consensus pattern (57 bp):
TAAACCATAAATCCCTAAACCCTAATCCTTAAACCCTGAATCATAAAACATAAACCA
Found at i:36580333 original size:64 final size:64
Alignment explanation
Indices: 36580227--36580382 Score: 163
Period size: 64 Copynumber: 2.4 Consensus size: 64
36580217 AACCCTGAAT
* * ** * * *
36580227 CATAAAACATAAACCATAAACCCTAAATCTTTAACCCTTAAACCTTAAACCCTAAT-GC-TTAAA
1 CATAAACCATAAACCATAAACCCTAAACCCATAACCCATAAACCTTAAA--ATAATAACTTTAAA
36580290 C
64 C
* * * *
36580291 CATAAACCATAAACCATAATCCCTAAACCCATAATCCATAAACTTTAAAATAGTAACTTTAAAC
1 CATAAACCATAAACCATAAACCCTAAACCCATAACCCATAAACCTTAAAATAATAACTTTAAAC
* *
36580355 CTTAAACCCTAAACCATAAACCCTAAAC
1 CATAAACCATAAACCATAAACCCTAAAC
36580383 TATAATGATA
Statistics
Matches: 76, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
62 3 0.04
63 1 0.01
64 72 0.95
ACGTcount: A:0.47, C:0.28, G:0.01, T:0.24
Consensus pattern (64 bp):
CATAAACCATAAACCATAAACCCTAAACCCATAACCCATAAACCTTAAAATAATAACTTTAAAC
Found at i:36580776 original size:40 final size:40
Alignment explanation
Indices: 36580718--36580803 Score: 120
Period size: 40 Copynumber: 2.1 Consensus size: 40
36580708 CGGCATTAAA
*
36580718 GCTCGATCTATAGAGGCATTTTACAAAG-AGTGCCGCTAAT
1 GCTCGATCTATAGAGGCATTTTAC-AAGTAGCGCCGCTAAT
* * *
36580758 TCTCGATCTATAGCGGCATTTTTCAAGTAGCGCCGCTAAT
1 GCTCGATCTATAGAGGCATTTTACAAGTAGCGCCGCTAAT
36580798 GCTCGA
1 GCTCGA
36580804 CCTACAATGG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 3 0.08
40 37 0.93
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (40 bp):
GCTCGATCTATAGAGGCATTTTACAAGTAGCGCCGCTAAT
Found at i:36580820 original size:40 final size:40
Alignment explanation
Indices: 36580732--36580839 Score: 108
Period size: 40 Copynumber: 2.7 Consensus size: 40
36580722 GATCTATAGA
* * * * * * *
36580732 GGCATTTTACAAAGAGTGCCGCTAATTCTCGATCTATAGC
1 GGCATTTTTCAAAAAGCGCCGCTAATGCTCGACCTACAAC
** *
36580772 GGCATTTTTCAAGTAGCGCCGCTAATGCTCGACCTACAAT
1 GGCATTTTTCAAAAAGCGCCGCTAATGCTCGACCTACAAC
* *
36580812 GGCGTTTTTCAAAAAGCACCGCTAATGC
1 GGCATTTTTCAAAAAGCGCCGCTAATGC
36580840 CACTAGTGCT
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (40 bp):
GGCATTTTTCAAAAAGCGCCGCTAATGCTCGACCTACAAC
Found at i:36580949 original size:40 final size:39
Alignment explanation
Indices: 36580889--36580992 Score: 145
Period size: 40 Copynumber: 2.6 Consensus size: 39
36580879 TTTTGTGGCA
*
36580889 TTTTTCAAAAAGCGCTGCTAATGGTCGACCTATAGCGACG
1 TTTTTCAAAAAGCGC-GCTAATGCTCGACCTATAGCGACG
* **
36580929 TTTTTCAAAAAGCGCAGCTAATGCTCGATCTATAGCGGTG
1 TTTTTCAAAAAGCGC-GCTAATGCTCGACCTATAGCGACG
36580969 TTTTTCAAAAAGCGTCGCTAATGC
1 TTTTTCAAAAAGCG-CGCTAATGC
36580993 CACAAAAGCT
Statistics
Matches: 58, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
40 57 0.98
41 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (39 bp):
TTTTTCAAAAAGCGCGCTAATGCTCGACCTATAGCGACG
Found at i:36581035 original size:153 final size:153
Alignment explanation
Indices: 36580732--36581146 Score: 488
Period size: 154 Copynumber: 2.7 Consensus size: 153
36580722 GATCTATAGA
* * * * * * * ** *
36580732 GGCATTTTACAAAGAGTGCCGCTAATTCTCGATCTATAGCGGCATTTTTCAAGTAGCGCCGCTAA
1 GGCATTTTTCAAAAAGAGCTGCTAATTGTCGACCTATAGCGGCGTTTTTCAAAAAGCGCAGCTAA
* * ** * * ** *
36580797 TGCTCGACCTACAATGGCGTTTTTCAAAAAGCACCGCTAATGCCACTAGTGCTCTACATAAAACG
66 TGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCCACAAAAGCTCAACATAAAACG
** *
36580862 AGGTATTGTGCTTAATTTTTTGT
131 AGACATTGTACTTAATTTTTTGT
* * *
36580885 GGCATTTTTCAAAAAGCGCTGCTAATGGTCGACCTATAGCGACGTTTTTCAAAAAGCGCAGCTAA
1 GGCATTTTTCAAAAAGAGCTGCTAATTGTCGACCTATAGCGGCGTTTTTCAAAAAGCGCAGCTAA
* * * *
36580950 TGCTCGATCTATAGCGGTGTTTTTCAAAAAGCGTCGCTAATGCCACAAAAGCTCAACATATAATG
66 TGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCCACAAAAGCTCAACATAAAACG
36581015 ACGACATTGTACTTAATTTTTTGT
131 A-GACATTGTACTTAATTTTTTGT
* * * *
36581039 GACATTTTTCAAAAAGAGCTGCTAATTGTTGACCTATAACGGCGCTTTTCAAAAAGCGCAGCTAA
1 GGCATTTTTCAAAAAGAGCTGCTAATTGTCGACCTATAGCGGCGTTTTTCAAAAAGCGCAGCTAA
* * * *
36581104 TGCTCAATCTATAGCGACGTTTTTCGAAAAGAGCCGCTAATGC
66 TGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGC
36581147 TCAATCTATA
Statistics
Matches: 220, Mismatches: 41, Indels: 1
0.84 0.16 0.00
Matches are distributed among these distances:
153 106 0.48
154 114 0.52
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.30
Consensus pattern (153 bp):
GGCATTTTTCAAAAAGAGCTGCTAATTGTCGACCTATAGCGGCGTTTTTCAAAAAGCGCAGCTAA
TGCTCGATCTATAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCCACAAAAGCTCAACATAAAACG
AGACATTGTACTTAATTTTTTGT
Found at i:36581198 original size:40 final size:40
Alignment explanation
Indices: 36581072--36581185 Score: 149
Period size: 40 Copynumber: 2.9 Consensus size: 40
36581062 AATTGTTGAC
* * * *
36581072 CTATAACGGCGCTTTTCAAAAAGCGCAGCTAATGCTCAAT
1 CTATAGCGGCGTTTTTCAGAAAGCGCCGCTAATGCTCAAT
* *
36581112 CTATAGCGACGTTTTTC-GAAAAGAGCCGCTAATGCTCAAT
1 CTATAGCGGCGTTTTTCAG-AAAGCGCCGCTAATGCTCAAT
*
36581152 CTATAGCGGCGTTTTTCAGAAAGCGCCGTTAATG
1 CTATAGCGGCGTTTTTCAGAAAGCGCCGCTAATG
36581186 TTTGATCTAT
Statistics
Matches: 63, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
40 62 0.98
41 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.21, T:0.27
Consensus pattern (40 bp):
CTATAGCGGCGTTTTTCAGAAAGCGCCGCTAATGCTCAAT
Found at i:36590365 original size:61 final size:61
Alignment explanation
Indices: 36590270--36590391 Score: 235
Period size: 61 Copynumber: 2.0 Consensus size: 61
36590260 TAAGCATGTG
*
36590270 TTTACACGATTTGGGACACCAAGATCTATTATTAGTGATGAAGGTTCTCATTTTGTGAACA
1 TTTACACGATTTGGGACACCAAGATCTATTATTAGTGATGAAGGTTCTCATTTTATGAACA
36590331 TTTACACGATTTGGGACACCAAGATCTATTATTAGTGATGAAGGTTCTCATTTTATGAACA
1 TTTACACGATTTGGGACACCAAGATCTATTATTAGTGATGAAGGTTCTCATTTTATGAACA
36590392 AATGGCTTAA
Statistics
Matches: 60, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 60 1.00
ACGTcount: A:0.30, C:0.15, G:0.19, T:0.36
Consensus pattern (61 bp):
TTTACACGATTTGGGACACCAAGATCTATTATTAGTGATGAAGGTTCTCATTTTATGAACA
Found at i:36601401 original size:20 final size:20
Alignment explanation
Indices: 36601364--36601402 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36601354 TTAATTTTAT
**
36601364 AATTAATTTTGATGAATTTC
1 AATTAATTTTGACAAATTTC
*
36601384 AATTATTTTTGACAAATTT
1 AATTAATTTTGACAAATTT
36601403 GCACAAAGGG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.36, C:0.05, G:0.08, T:0.51
Consensus pattern (20 bp):
AATTAATTTTGACAAATTTC
Found at i:36604305 original size:68 final size:69
Alignment explanation
Indices: 36604178--36604310 Score: 164
Period size: 68 Copynumber: 1.9 Consensus size: 69
36604168 CATTTAATTT
* *
36604178 CACATTGACTAGAGAATACTCTCACAACTCACTTCTACTATTTTCATTAAAAAAGTTAAT-TTTA
1 CACATTCACTAGAGAATACTCTCACAACTCACTTCTACTATTTACATTAAAAAAGTTAATCTTTA
36604242 ATCA
66 ATCA
* * * * *
36604246 CACATTCATTAGAGAATACTCTCATAGCTCACATTTTCGCTATTTACATT-AAAAA-TTAATCTT
1 CACATTCACTAGAGAATACTCTCACAACTCAC-TTCT-ACTATTTACATTAAAAAAGTTAATCTT
36604309 TA
64 TA
36604311 TCCATTAAAA
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
68 33 0.60
69 12 0.22
70 10 0.18
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.37
Consensus pattern (69 bp):
CACATTCACTAGAGAATACTCTCACAACTCACTTCTACTATTTACATTAAAAAAGTTAATCTTTA
ATCA
Found at i:36604316 original size:21 final size:21
Alignment explanation
Indices: 36604292--36604333 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
36604282 TCGCTATTTA
36604292 CATTAAAAATTAATCTTTATC
1 CATTAAAAATTAATCTTTATC
*
36604313 CATTAAAAATTAATTTTTATC
1 CATTAAAAATTAATCTTTATC
36604334 TCACATTAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (21 bp):
CATTAAAAATTAATCTTTATC
Found at i:36604553 original size:94 final size:92
Alignment explanation
Indices: 36604214--36604553 Score: 270
Period size: 94 Copynumber: 3.7 Consensus size: 92
36604204 ACTCACTTCT
* * *
36604214 ACTATTTTCATTAAAAAAGTTAATTTTAATCACACATTCATTAGAGAATACTCTCATAGCTCACA
1 ACTATTTTCATT-AAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAGCTCACA
* ** * * *
36604279 TTTTCGCTATTTACA--TTAAAA-ATTAA
65 TTTAC-CTATAAAAAGGTCAAAATTTTAA
* * * * *
36604305 TCT-TTATCCATTAAAAA-TTAATTTTTATCTCACATT-AGCT-G-TAATACACTTCCAT-GCTC
1 ACTATT-TTCATTAAAAAGTTAATTTTAATCTCACATTGA-CTAGAGAATACTC-T-CATAGCTC
* * *
36604364 ACACTTACCCTATAAATAAGTGTCAAATTTTTTAT
62 ACATTTA-CCTATAAA-AAG-GTCAAA-ATTTTAA
* * * * * *
36604399 A-TATTTTAATT-AAAAGTTAATTTTAATCTCACATTGACTCGAGAACACCCCCATATCTCACAT
1 ACTATTTTCATTAAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAGCTCACAT
*
36604462 TTACCATATAAAAAGGTGAAAATCTTTAA
66 TTACC-TATAAAAAGGTCAAAAT-TTTAA
*
36604491 ACTATTTTTATTAAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAGCTCAC
1 ACTATTTTCATTAAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAGCTCAC
36604554 GAATTCATTA
Statistics
Matches: 193, Mismatches: 35, Indels: 39
0.72 0.13 0.15
Matches are distributed among these distances:
87 6 0.03
88 17 0.09
89 23 0.12
90 7 0.04
91 8 0.04
92 18 0.09
93 42 0.22
94 67 0.35
95 5 0.03
ACGTcount: A:0.37, C:0.18, G:0.06, T:0.38
Consensus pattern (92 bp):
ACTATTTTCATTAAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAGCTCACAT
TTACCTATAAAAAGGTCAAAATTTTAA
Found at i:36604573 original size:69 final size:69
Alignment explanation
Indices: 36604491--36604652 Score: 200
Period size: 70 Copynumber: 2.3 Consensus size: 69
36604481 AAATCTTTAA
* * * * * *
36604491 ACTATTTTTATTAAAAAGTTAATTTTAATCTCACATTGACTAGAGAATACTCTCATAGCTCACGA
1 ACTATTTTAATTAAAAAGTTAATTTTAACCCCACATTGACTAGAGAATACTATAATAACTCACGA
36604556 ATTC
66 ATTC
* * *
36604560 ATTATTTTAATTAAAAAAGTTAGTTTTAACCCCACATTGACTAGAGAATACTATAATAACTCACT
1 ACTATTTTAATT-AAAAAGTTAATTTTAACCCCACATTGACTAGAGAATACTATAATAACTCACG
*
36604625 TATTC
65 AATTC
* *
36604630 GCTATTTTCATTAAAAA-TTAATT
1 ACTATTTTAATTAAAAAGTTAATT
36604653 AGAATCCTTC
Statistics
Matches: 78, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
68 5 0.06
69 15 0.19
70 58 0.74
ACGTcount: A:0.38, C:0.15, G:0.07, T:0.39
Consensus pattern (69 bp):
ACTATTTTAATTAAAAAGTTAATTTTAACCCCACATTGACTAGAGAATACTATAATAACTCACGA
ATTC
Found at i:36605174 original size:93 final size:94
Alignment explanation
Indices: 36605054--36605264 Score: 329
Period size: 93 Copynumber: 2.3 Consensus size: 94
36605044 TTAGCCCCTT
* *
36605054 AAAAAGTT-ATTTTTTTTCCCACTTTGGCTAGAATACACTCCCATGCTCACACATACCCTATAAA
1 AAAAAGTTAATTTTTATTCCCACATTGGCTAGAATACACTCCCATGCTCACACATACCCTATAAA
*
36605118 TACGTGTCAATTTCTTCTCTATTTTTATC
66 TACGTGCCAATTTCTTCTCTATTTTTATC
* *
36605147 AAAAAGTTAATTTTTATT-CCACATTGGCTAGAATACACTTCCATGCTCACACATACCTTATAAA
1 AAAAAGTTAATTTTTATTCCCACATTGGCTAGAATACACTCCCATGCTCACACATACCCTATAAA
*
36605211 TACGTGCCAATTTCTTCTCTATTTTTATT
66 TACGTGCCAATTTCTTCTCTATTTTTATC
* *
36605240 AAAAATTTAA-TTTTAGTCCCACATT
1 AAAAAGTTAATTTTTATTCCCACATT
36605265 AACTACAAAA
Statistics
Matches: 108, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
92 6 0.06
93 94 0.87
94 8 0.07
ACGTcount: A:0.31, C:0.22, G:0.07, T:0.40
Consensus pattern (94 bp):
AAAAAGTTAATTTTTATTCCCACATTGGCTAGAATACACTCCCATGCTCACACATACCCTATAAA
TACGTGCCAATTTCTTCTCTATTTTTATC
Found at i:36609339 original size:6 final size:6
Alignment explanation
Indices: 36609328--36609359 Score: 64
Period size: 6 Copynumber: 5.3 Consensus size: 6
36609318 CTTATATTCT
36609328 CCCCCA CCCCCA CCCCCA CCCCCA CCCCCA CC
1 CCCCCA CCCCCA CCCCCA CCCCCA CCCCCA CC
36609360 AATGCCTTCC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.16, C:0.84, G:0.00, T:0.00
Consensus pattern (6 bp):
CCCCCA
Found at i:36609670 original size:23 final size:25
Alignment explanation
Indices: 36609644--36609693 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
36609634 GAATTAATGG
*
36609644 TTGAATTATTTT-T-ATTTTATTTT
1 TTGAATAATTTTATAATTTTATTTT
36609667 TTGAATAATTTTATAATTTTATTTT
1 TTGAATAATTTTATAATTTTATTTT
36609692 TT
1 TT
36609694 TATTCAATTG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
23 11 0.46
24 1 0.04
25 12 0.50
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (25 bp):
TTGAATAATTTTATAATTTTATTTT
Found at i:36617004 original size:25 final size:23
Alignment explanation
Indices: 36616966--36617011 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 23
36616956 ATCTTCTTTC
36616966 GTAAAAAGTCAATTACTATCAAATA
1 GTAAAAAGTCAATT--TATCAAATA
36616991 GTAATAAAGT-AATTTATCAAA
1 GTAA-AAAGTCAATTTATCAAA
36617012 AAAAATGAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 7 0.35
25 8 0.40
26 5 0.25
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.30
Consensus pattern (23 bp):
GTAAAAAGTCAATTTATCAAATA
Found at i:36621032 original size:18 final size:18
Alignment explanation
Indices: 36621005--36621053 Score: 71
Period size: 18 Copynumber: 2.7 Consensus size: 18
36620995 TTTGCATAAA
36621005 TAACACAGTTCACCAAAT
1 TAACACAGTTCACCAAAT
* *
36621023 TAACATAGTTCACGAAAT
1 TAACACAGTTCACCAAAT
*
36621041 TAACACAATTCAC
1 TAACACAGTTCAC
36621054 ATTATTATAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.45, C:0.24, G:0.06, T:0.24
Consensus pattern (18 bp):
TAACACAGTTCACCAAAT
Found at i:36630836 original size:14 final size:11
Alignment explanation
Indices: 36630805--36630829 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36630795 GGGGAGGGCA
36630805 AGAAAGGTAGT
1 AGAAAGGTAGT
36630816 AGAAAGGTAGT
1 AGAAAGGTAGT
36630827 AGA
1 AGA
36630830 TCAAAGGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.16
Consensus pattern (11 bp):
AGAAAGGTAGT
Found at i:36635321 original size:24 final size:24
Alignment explanation
Indices: 36635264--36635328 Score: 71
Period size: 23 Copynumber: 2.8 Consensus size: 24
36635254 CATCTTCCGC
* *
36635264 TTTATTTTT-TTCCTTCTATTTTT
1 TTTATTTTTCTTTCTTCTATTATT
*
36635287 TTTCTTTTTCTTTCTT-TATTATT
1 TTTATTTTTCTTTCTTCTATTATT
*
36635310 TTTATTTATTCTTTGTTCT
1 TTTATTT-TTCTTTCTTCT
36635329 CAAATTTCTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
23 20 0.59
24 13 0.38
25 1 0.03
ACGTcount: A:0.09, C:0.12, G:0.02, T:0.77
Consensus pattern (24 bp):
TTTATTTTTCTTTCTTCTATTATT
Found at i:36636324 original size:9 final size:9
Alignment explanation
Indices: 36636310--36636335 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
36636300 TTAAAAATGA
36636310 TGATGATGG
1 TGATGATGG
36636319 TGATGATGG
1 TGATGATGG
36636328 TGATGATG
1 TGATGATG
36636336 AACAACCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.35
Consensus pattern (9 bp):
TGATGATGG
Found at i:36641064 original size:22 final size:22
Alignment explanation
Indices: 36641036--36641083 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
36641026 TGATTGATTA
*
36641036 GGATATTCTATAGG-GTTTTAAG
1 GGATATTCTAT-GGTATTTTAAG
*
36641058 GGATATTTTATGGTATTTTAAG
1 GGATATTCTATGGTATTTTAAG
36641080 GGAT
1 GGAT
36641084 TGATTAGGAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.44
Consensus pattern (22 bp):
GGATATTCTATGGTATTTTAAG
Found at i:36641088 original size:54 final size:52
Alignment explanation
Indices: 36640965--36641093 Score: 150
Period size: 54 Copynumber: 2.4 Consensus size: 52
36640955 TTCAAAGCTC
* * *
36640965 TATTTTTAGAGATTGATTAGGATATTTTATAGGATTTATGACATATTTATGG
1 TATTTTAAGAGATTGATTAGGATATTCTATAGGATTTAAGACATATTTATGG
* ** * **
36641017 GATTTTAATTGATTGATTAGGATATTCTATAGGGTTTTAAGGGATATTTTATGG
1 TATTTTAAGAGATTGATTAGGATATTCTATA-GGATTTAAGACATA-TTTATGG
*
36641071 TATTTTAAGGGATTGATTAGGAT
1 TATTTTAAGAGATTGATTAGGAT
36641094 TTTATGGGAT
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
52 26 0.41
53 10 0.16
54 27 0.43
ACGTcount: A:0.29, C:0.02, G:0.22, T:0.47
Consensus pattern (52 bp):
TATTTTAAGAGATTGATTAGGATATTCTATAGGATTTAAGACATATTTATGG
Found at i:36647707 original size:30 final size:29
Alignment explanation
Indices: 36647631--36647707 Score: 77
Period size: 30 Copynumber: 2.6 Consensus size: 29
36647621 AAATTTTAAA
36647631 GACACAAGACCGTGTGGGTTTGCCATTGTG
1 GACACAAGACCGTGT-GGTTTGCCATTGTG
*
36647661 GACCACACA-ACTGTGTGGTTTGGCCATGTGTG
1 GA-CACA-AGACCGTGTGGTTT-GCCAT-TGTG
*
36647693 G-CACATGACCGTGTG
1 GACACAAGACCGTGTG
36647708 ACAGCCTGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
30 18 0.46
31 15 0.38
32 6 0.15
ACGTcount: A:0.19, C:0.22, G:0.32, T:0.26
Consensus pattern (29 bp):
GACACAAGACCGTGTGGTTTGCCATTGTG
Found at i:36671062 original size:21 final size:22
Alignment explanation
Indices: 36671029--36671071 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
36671019 CAAATTTATG
* *
36671029 AAAATTTATTATA-AAATAATT
1 AAAATTCAATATATAAATAATT
*
36671050 AAAATTCAATATATTAATAATT
1 AAAATTCAATATATAAATAATT
36671072 TAAGTGGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
21 11 0.61
22 7 0.39
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.42
Consensus pattern (22 bp):
AAAATTCAATATATAAATAATT
Found at i:36675515 original size:26 final size:25
Alignment explanation
Indices: 36675462--36675522 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 25
36675452 CAATAATTTT
**
36675462 ATATATTATATAATAAAACCCATGC
1 ATATATTATATAATAAAACCCACAC
* *
36675487 ATATATGTATATAGTAAGACCCACAC
1 ATATAT-TATATAATAAAACCCACAC
*
36675513 ATATAATATA
1 ATATATTATA
36675523 ATTTATGTAC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.48, C:0.15, G:0.07, T:0.31
Consensus pattern (25 bp):
ATATATTATATAATAAAACCCACAC
Found at i:36676861 original size:13 final size:13
Alignment explanation
Indices: 36676843--36676893 Score: 52
Period size: 12 Copynumber: 3.9 Consensus size: 13
36676833 ATTAATACCA
36676843 TAATTATTTATTT
1 TAATTATTTATTT
36676856 TAATTA-TTATTT
1 TAATTATTTATTT
* *
36676868 TTACTATTT-TTAAT
1 TAATTATTTATT--T
36676882 TAATTATTTATT
1 TAATTATTTATT
36676894 GTATCCTATT
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
12 12 0.40
13 8 0.27
14 8 0.27
15 2 0.07
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (13 bp):
TAATTATTTATTT
Found at i:36677386 original size:31 final size:31
Alignment explanation
Indices: 36677350--36677416 Score: 125
Period size: 31 Copynumber: 2.2 Consensus size: 31
36677340 GACGATTTTC
36677350 CTTTTCCTTCAAAGTATTTCTTTAATTCTTT
1 CTTTTCCTTCAAAGTATTTCTTTAATTCTTT
*
36677381 GTTTTCCTTCAAAGTATTTCTTTAATTCTTT
1 CTTTTCCTTCAAAGTATTTCTTTAATTCTTT
36677412 CTTTT
1 CTTTT
36677417 TCTTAAGTAC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.18, C:0.18, G:0.04, T:0.60
Consensus pattern (31 bp):
CTTTTCCTTCAAAGTATTTCTTTAATTCTTT
Found at i:36678387 original size:22 final size:22
Alignment explanation
Indices: 36678362--36678429 Score: 68
Period size: 22 Copynumber: 3.2 Consensus size: 22
36678352 TTTTGTTAGT
36678362 CTTTATGGCATTTTGATATGGC
1 CTTTATGGCATTTTGATATGGC
* **
36678384 CTTTATGGCATTCTG-T-TAAC
1 CTTTATGGCATTTTGATATGGC
* **
36678404 CTTTGTAACATTTTGATATGGC
1 CTTTATGGCATTTTGATATGGC
36678426 CTTT
1 CTTT
36678430 GTGGAATTAT
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
20 13 0.37
21 2 0.06
22 20 0.57
ACGTcount: A:0.19, C:0.16, G:0.18, T:0.47
Consensus pattern (22 bp):
CTTTATGGCATTTTGATATGGC
Found at i:36685631 original size:22 final size:21
Alignment explanation
Indices: 36685596--36685672 Score: 59
Period size: 19 Copynumber: 3.7 Consensus size: 21
36685586 AAAGGGTATC
* *
36685596 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
36685617 TACAAAATCATATCTTTTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
36685640 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
36685659 TATATATCATATCT
1 TACAAATCATATCT
36685673 AAGACTGCAT
Statistics
Matches: 44, Mismatches: 8, Indels: 8
0.73 0.13 0.13
Matches are distributed among these distances:
19 16 0.36
21 4 0.09
22 15 0.34
23 9 0.20
ACGTcount: A:0.42, C:0.14, G:0.05, T:0.39
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:36685658 original size:19 final size:19
Alignment explanation
Indices: 36685634--36685742 Score: 155
Period size: 19 Copynumber: 5.7 Consensus size: 19
36685624 TCATATCTTT
36685634 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
**
36685653 TAAGATTATATATCATATC
1 TAAGATTGCATATCATATC
* *
36685672 TAAGACTGCATATTATATC
1 TAAGATTGCATATCATATC
** *
36685691 TAAGATTATATATTATATC
1 TAAGATTGCATATCATATC
36685710 TAAGATTGCATATCATATC
1 TAAGATTGCATATCATATC
36685729 TAAGATTGCATATC
1 TAAGATTGCATATC
36685743 CCTGAAGATT
Statistics
Matches: 78, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 78 1.00
ACGTcount: A:0.39, C:0.13, G:0.09, T:0.39
Consensus pattern (19 bp):
TAAGATTGCATATCATATC
Found at i:36685682 original size:38 final size:38
Alignment explanation
Indices: 36685634--36685735 Score: 177
Period size: 38 Copynumber: 2.7 Consensus size: 38
36685624 TCATATCTTT
36685634 TAAGATTGCATATCATATCTAAGATTATATATCATATC
1 TAAGATTGCATATCATATCTAAGATTATATATCATATC
* * *
36685672 TAAGACTGCATATTATATCTAAGATTATATATTATATC
1 TAAGATTGCATATCATATCTAAGATTATATATCATATC
36685710 TAAGATTGCATATCATATCTAAGATT
1 TAAGATTGCATATCATATCTAAGATT
36685736 GCATATCCCT
Statistics
Matches: 59, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 59 1.00
ACGTcount: A:0.39, C:0.12, G:0.09, T:0.40
Consensus pattern (38 bp):
TAAGATTGCATATCATATCTAAGATTATATATCATATC
Found at i:36686294 original size:132 final size:132
Alignment explanation
Indices: 36686070--36686832 Score: 1312
Period size: 132 Copynumber: 5.8 Consensus size: 132
36686060 TAGGACTTAC
36686070 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
* *
36686135 AACCACAGAGAGGTAAAATCCGTCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
36686200 GA
131 GA
*
36686202 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTGT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
* * *
36686267 AACCACAGGAAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAAATAAGACCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
36686332 GA
131 GA
36686334 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
* * *
36686399 AACCACAGGGAGGTAAAATTCGCCATCTTCGATCTGCTCCACTACTGCTTAGAGAGATAAGACCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
36686464 GA
131 GA
*
36686466 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGACTTCAATGTACTCCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
*
36686531 AACCATAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
36686596 GA
131 GA
* * * *
36686598 AATCTTCAATCTATTCCACTGTTGTTCAGGGAAGTAGAATTACTGGTTTCAATTTACTGCACTAT
1 AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
* * * * *
36686663 AACCACATGGAGGTAAAATCCGTCATTTTCGATCTGCTCCACTACTACTTAGGGAGATAAGATTT
66 AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
36686728 GA
131 GA
*
36686730 ATTCTTCAATCTATTCCACTGTTG-CCTAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTA
1 AATCTTCAATCTATTCCACTGTTGTCC-AGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTA
*
36686794 TAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTGCT
65 TAACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCT
36686833 TCGCTGTCAA
Statistics
Matches: 594, Mismatches: 36, Indels: 2
0.94 0.06 0.00
Matches are distributed among these distances:
131 1 0.00
132 593 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (132 bp):
AATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAATGTACTCCACTAT
AACCACAGGGAGGTAAAATCCGCCATCTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCT
GA
Found at i:36693016 original size:20 final size:20
Alignment explanation
Indices: 36692984--36693027 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
36692974 AAAAAAATAC
36692984 ATAAGTTTTAAA-TAATTAA
1 ATAAGTTTTAAATTAATTAA
36693003 TATAA-TTTTAAAATTAATTAA
1 -ATAAGTTTT-AAATTAATTAA
36693024 ATAA
1 ATAA
36693028 ATTAAACATG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
19 4 0.18
20 11 0.50
21 7 0.32
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
ATAAGTTTTAAATTAATTAA
Found at i:36693720 original size:22 final size:21
Alignment explanation
Indices: 36693685--36693780 Score: 65
Period size: 19 Copynumber: 4.7 Consensus size: 21
36693675 AAAGGGTATC
* *
36693685 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
36693706 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
36693729 TGCATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
36693748 TATATAT--TATATCTAAGAT
1 TACAAATCATATCTCTAAGAT
* *
36693767 TGCATATCATATCT
1 TACAAATCATATCT
36693781 AAGATTGCAT
Statistics
Matches: 60, Mismatches: 9, Indels: 12
0.74 0.11 0.15
Matches are distributed among these distances:
17 2 0.03
19 26 0.43
21 7 0.12
22 15 0.25
23 10 0.17
ACGTcount: A:0.41, C:0.15, G:0.06, T:0.39
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:36693728 original size:23 final size:22
Alignment explanation
Indices: 36693685--36693742 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
36693675 AAAGGGTATC
* *
36693685 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
36693706 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
36693729 TGCATATCATATCT
1 TACAAATCATATCT
36693743 AAGATTATAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:36693745 original size:19 final size:19
Alignment explanation
Indices: 36693721--36693793 Score: 119
Period size: 19 Copynumber: 3.8 Consensus size: 19
36693711 AATCATATCT
36693721 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
** *
36693740 TCTAAGATTATATATTATA
1 TCTAAGATTGCATATCATA
36693759 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
36693778 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
36693794 CCTGAAGATT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 48 1.00
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.40
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:36696858 original size:22 final size:22
Alignment explanation
Indices: 36696819--36696904 Score: 93
Period size: 22 Copynumber: 3.8 Consensus size: 22
36696809 TTCTTCTTTC
*
36696819 AGAGAATATTCACTGTTCAAGCT
1 AGAGAAT-TTTACTGTTCAAGCT
*
36696842 AGATAATTTTACTGTTCAAGCT
1 AGAGAATTTTACTGTTCAAGCT
* *
36696864 AGAGAATTTTATTGTTCATCGC-
1 AGAGAATTTTACTGTTCA-AGCT
*
36696886 AGAGAATCTTCACTGTTCA
1 AGAGAAT-TTTACTGTTCA
36696905 TTCTCATTTT
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
22 37 0.69
23 17 0.31
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.36
Consensus pattern (22 bp):
AGAGAATTTTACTGTTCAAGCT
Found at i:36707759 original size:107 final size:108
Alignment explanation
Indices: 36707532--36707728 Score: 310
Period size: 105 Copynumber: 1.9 Consensus size: 108
36707522 AAAAATAATA
* * *
36707532 AAGGTAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTC
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATATTTC
*
36707597 TCGTTCAACCAAATAGCCGAATATCCTTCCAAAAATTTCAAAT
66 TCGTTCAACCAAATAGCCAAATATCCTTCCAAAAATTTCAAAT
*
36707640 AAGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAATGTGCTGGGTTTC-A-ATTTC
1 AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATATTTC
* *
36707702 TCGTTTAACTAAATAGCCAAATATCCT
66 TCGTTCAACCAAATAGCCAAATATCCT
36707729 CTTGAATTTC
Statistics
Matches: 82, Mismatches: 7, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
105 28 0.34
106 1 0.01
107 25 0.30
108 28 0.34
ACGTcount: A:0.29, C:0.18, G:0.19, T:0.34
Consensus pattern (108 bp):
AAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATATTTC
TCGTTCAACCAAATAGCCAAATATCCTTCCAAAAATTTCAAAT
Found at i:36713552 original size:86 final size:87
Alignment explanation
Indices: 36713379--36714080 Score: 797
Period size: 86 Copynumber: 8.1 Consensus size: 87
36713369 GATCAGTGAG
* * * * * *
36713379 GATC-AAAGACAAAGCCTTGCCTCCATCGATCGCAATGGAGCTGGTTCAAGATAGCAGATCTTGC
1 GATCGAAA-ACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTGAAGACAACAGATCTTGC
36713443 CTTCCTGCGTTAACAGCGAAGCA
65 CTTCCTGCGTTAACAGCGAAGCA
* * * *
36713466 GATTGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTAAAGA-ACCTGATCTTGCC
1 GATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTGAAGACAACAGATCTTGCC
*
36713530 TTCCTGCATTAACAGCGAAGCA
66 TTCCTGCGTTAACAGCGAAGCA
* * * * **
36713552 GATCGAAAACAAAGCCTTGCCTCCATCGGTCGCAGTCGAGCTAGTTGAAGATAGTAGATCTTGCC
1 GATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTGAAGACAACAGATCTTGCC
* * *
36713617 TTACTGTGTTAACAGCGAAACA
66 TTCCTGCGTTAACAGCGAAGCA
* * * *
36713639 GATCGAAAACAAAGCCTTGCCTCTATCGGTTGTAGTGGAGCTGGTTAAAGA-AGCAGATCTTGCC
1 GATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTGAAGACAACAGATCTTGCC
** *
36713703 TTCCTATGTTAACAGCGAAGAA
66 TTCCTGCGTTAACAGCGAAGCA
* * * * *
36713725 GATCGAAAACAAAGTCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGA-AGCAGGTCTTGCC
1 GATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTGAAGACAACAGATCTTGCC
36713789 TTCCTGCGTTAACAGCGAAGCA
66 TTCCTGCGTTAACAGCGAAGCA
* * * *
36713811 GATCAAAAATAAAACCTTGCCTCCATCGGTTGCAGTGGAGTTGGTTGAAGACAACAGATCTTGCC
1 GATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTGAAGACAACAGATCTTGCC
* * *
36713876 TTCCTGCCTTGACAACGAAGCA
66 TTCCTGCGTTAACAGCGAAGCA
* **
36713898 GATCGAAGACACAAA-CCTTGCCTCTC-TCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTT
1 GATCGAA-A-ACAAAGCCTTGCCTC-CATCGGTTGCAGTGGAGCTGGTTGAAGACAACAGATCTT
* * *
36713961 GCCTTCCTGCATTGACAGTGAAGCA
63 GCCTTCCTGCGTTAACAGCGAAGCA
* ** * * * * *
36713986 TATCGAAGACACAAA-AATTTCCTCCCTCAGTTGTAGTGGAGCTGGTTGAGGACAACAGATCTTG
1 GATCGAA-A-ACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTGAAGACAACAGATCTTG
* * *
36714050 CCTTCCTGCATTGACAGCGAAGTA
64 CCTTCCTGCGTTAACAGCGAAGCA
36714074 GATCGAA
1 GATCGAA
36714081 GTTACAAATC
Statistics
Matches: 539, Mismatches: 69, Indels: 13
0.87 0.11 0.02
Matches are distributed among these distances:
86 232 0.43
87 152 0.28
88 150 0.28
89 5 0.01
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (87 bp):
GATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCTGGTTGAAGACAACAGATCTTGCC
TTCCTGCGTTAACAGCGAAGCA
Found at i:36713678 original size:173 final size:175
Alignment explanation
Indices: 36713379--36714080 Score: 821
Period size: 173 Copynumber: 4.0 Consensus size: 175
36713369 GATCAGTGAG
* * * * *
36713379 GATC-AAAGACAAAGCCTTGCCTCCATCGATCGCAATGGAGCTGGTTCAAGATAGCAGATCTTGC
1 GATCGAAACACAAAGCCTTGCCTCCATCGGTCGCAGTCGAGCTGGTTGAAGATAGCAGATCTTGC
*
36713443 CTTCCTGCGTTAACAGCGAAGCAGATTGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
66 CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
* *
36713508 GGTTAAAGA-ACCTGATCTTGCCTTCCTGCATTAACAGCGAAGCA
131 GGTTAAAGACAACAGATCTTGCCTTCCTGCATTAACAGCGAAGCA
* *
36713552 GATCGAAA-ACAAAGCCTTGCCTCCATCGGTCGCAGTCGAGCTAGTTGAAGATAGTAGATCTTGC
1 GATCGAAACACAAAGCCTTGCCTCCATCGGTCGCAGTCGAGCTGGTTGAAGATAGCAGATCTTGC
* * * * *
36713616 CTTACTGTGTTAACAGCGAAACAGATCGAAAACAAAGCCTTGCCTCTATCGGTTGTAGTGGAGCT
66 CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
* *** *
36713681 GGTTAAAGA-AGCAGATCTTGCCTTCCTATGTTAACAGCGAAGAA
131 GGTTAAAGACAACAGATCTTGCCTTCCTGCATTAACAGCGAAGCA
* * * * * *
36713725 GATCGAAA-ACAAAGTCTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGA-AGCAGGTCTTGC
1 GATCGAAACACAAAGCCTTGCCTCCATCGGTCGCAGTCGAGCTGGTTGAAGATAGCAGATCTTGC
* * * *
36713788 CTTCCTGCGTTAACAGCGAAGCAGATCAAAAATAAAACCTTGCCTCCATCGGTTGCAGTGGAGTT
66 CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
* * * *
36713853 GGTTGAAGACAACAGATCTTGCCTTCCTGCCTTGACAACGAAGCA
131 GGTTAAAGACAACAGATCTTGCCTTCCTGCATTAACAGCGAAGCA
* * * *
36713898 GATCGAAGACACAAA-CCTTGCCTCTC-TCGGTTGTAG-CAGAGCTGGTTGAAGACAACAGATCT
1 GATCGAA-ACACAAAGCCTTGCCTC-CATCGGTCGCAGTC-GAGCTGGTTGAAGATAGCAGATCT
* * * * ** * * * *
36713960 TGCCTTCCTGCATTGACAGTGAAGCATATCGAAGACACAAA-AATTTCCTCCCTCAGTTGTAGTG
63 TGCCTTCCTGCGTTAACAGCGAAGCAGATCGAA-A-ACAAAGCCTTGCCTCCATCGGTTGCAGTG
* * * *
36714024 GAGCTGGTTGAGGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGTA
126 GAGCTGGTTAAAGACAACAGATCTTGCCTTCCTGCATTAACAGCGAAGCA
36714074 GATCGAA
1 GATCGAA
36714081 GTTACAAATC
Statistics
Matches: 455, Mismatches: 65, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
172 74 0.16
173 231 0.51
174 35 0.08
175 41 0.09
176 70 0.15
177 4 0.01
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (175 bp):
GATCGAAACACAAAGCCTTGCCTCCATCGGTCGCAGTCGAGCTGGTTGAAGATAGCAGATCTTGC
CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
GGTTAAAGACAACAGATCTTGCCTTCCTGCATTAACAGCGAAGCA
Found at i:36713701 original size:43 final size:43
Alignment explanation
Indices: 36713654--36713789 Score: 100
Period size: 43 Copynumber: 3.2 Consensus size: 43
36713644 AAAACAAAGC
36713654 CTTGCCTCTATCGGTTGTAGTGGAGCTGGTTAAAGAAGCAGAT
1 CTTGCCTCTATCGGTTGTAGTGGAGCTGGTTAAAGAAGCAGAT
** * * ** * ** *
36713697 CTTGCCTTCCTAT--GTTAACAGCGAAGAAGATCGAA-AA-CAAAGT
1 CTTGCC-T-CTATCGGTT-GTAGTGGAGCTGGTTAAAGAAGCAGA-T
* *
36713740 CTTGCCTCCATCGGTTGTAGTGGAGCTGGTTAAAGAAGCAGGT
1 CTTGCCTCTATCGGTTGTAGTGGAGCTGGTTAAAGAAGCAGAT
36713783 CTTGCCT
1 CTTGCCT
36713790 TCCTGCGTTA
Statistics
Matches: 63, Mismatches: 22, Indels: 16
0.62 0.22 0.16
Matches are distributed among these distances:
41 3 0.05
42 13 0.21
43 31 0.49
44 12 0.19
45 4 0.06
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (43 bp):
CTTGCCTCTATCGGTTGTAGTGGAGCTGGTTAAAGAAGCAGAT
Found at i:36713902 original size:259 final size:261
Alignment explanation
Indices: 36713379--36714077 Score: 852
Period size: 259 Copynumber: 2.7 Consensus size: 261
36713369 GATCAGTGAG
* * * * * * * *
36713379 GATC-AAAGACAAAGCCTTGCCTCCATCGATCGCAATGGAGCTGGTTCAAGATAGCAGATCTTGC
1 GATCGAAACACAAAGCCTTGCCTCTATCGGTTGTAGTGGAGCTGGTTAAAGACAGCAGATCTTGC
* * *
36713443 CTTCCTGCGTTAACAGCGAAGCAGATTGAAAACAAAGCCTTGCCTCCATCGGTTGCAGTGGAGCT
66 CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGTCTTGCCTCCATCGGTTGTAGTGGAGCT
* * * *
36713508 GGTTAAAGAACCTGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTGCC
131 GGTTAAAGAAACAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCAAAAACAAAACCTTGCC
* ** ** *
36713573 TCCATCGGTCGCAGTCGAGCTAGTTGAAGATAGTAGATCTTGCCTTACTGTGTTAACAGCGAAAC
196 TCCATCGGTCGCAGTCGAGCTAGTTGAAGACAACAGATCTTGCCTTACTGCCTTAACAACGAAAC
36713638 A
261 A
36713639 GATCGAAA-ACAAAGCCTTGCCTCTATCGGTTGTAGTGGAGCTGGTTAAAGA-AGCAGATCTTGC
1 GATCGAAACACAAAGCCTTGCCTCTATCGGTTGTAGTGGAGCTGGTTAAAGACAGCAGATCTTGC
** *
36713702 CTTCCTATGTTAACAGCGAAGAAGATCGAAAACAAAGTCTTGCCTCCATCGGTTGTAGTGGAGCT
66 CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGTCTTGCCTCCATCGGTTGTAGTGGAGCT
* * * *
36713767 GGTTAAAGAAGCAGGTCTTGCCTTCCTGCGTTAACAGCGAAGCAGATCAAAAATAAAACCTTGCC
131 GGTTAAAGAAACAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCAAAAACAAAACCTTGCC
* * * * * * *
36713832 TCCATCGGTTGCAGTGGAGTTGGTTGAAGACAACAGATCTTGCCTTCCTGCCTTGACAACGAAGC
196 TCCATCGGTCGCAGTCGAGCTAGTTGAAGACAACAGATCTTGCCTTACTGCCTTAACAACGAAAC
36713897 A
261 A
* ** * *
36713898 GATCGAAGACACAAA-CCTTGCCTCTCTCGGTTGTAGCAGAGCTGGTTGAAGACAACAGATCTTG
1 GATCGAA-ACACAAAGCCTTGCCTCTATCGGTTGTAGTGGAGCTGGTTAAAGACAGCAGATCTTG
* * * * * * *
36713962 CCTTCCTGCATTGACAGTGAAGCATATCGAAGACACAAAAAT-TT-CCTCCCTCAGTTGTAGTGG
65 CCTTCCTGCGTTAACAGCGAAGCAGATCGAA-A-AC-AAAGTCTTGCCTCCATCGGTTGTAGTGG
* * * *
36714025 AGCTGGTTGAGGACAACAGATCTTGCCTTCCTGCATTGACAGCGAAGTAGATC
127 AGCTGGTTAAAGA-AACAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATC
36714078 GAAGTTACAA
Statistics
Matches: 377, Mismatches: 54, Indels: 13
0.85 0.12 0.03
Matches are distributed among these distances:
259 189 0.50
260 75 0.20
261 42 0.11
262 29 0.08
263 38 0.10
264 4 0.01
ACGTcount: A:0.29, C:0.23, G:0.24, T:0.24
Consensus pattern (261 bp):
GATCGAAACACAAAGCCTTGCCTCTATCGGTTGTAGTGGAGCTGGTTAAAGACAGCAGATCTTGC
CTTCCTGCGTTAACAGCGAAGCAGATCGAAAACAAAGTCTTGCCTCCATCGGTTGTAGTGGAGCT
GGTTAAAGAAACAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCAAAAACAAAACCTTGCC
TCCATCGGTCGCAGTCGAGCTAGTTGAAGACAACAGATCTTGCCTTACTGCCTTAACAACGAAAC
A
Found at i:36714251 original size:132 final size:132
Alignment explanation
Indices: 36714108--36714456 Score: 488
Period size: 132 Copynumber: 2.6 Consensus size: 132
36714098 CCTGGCCAGC
* * *
36714108 AGTGGAATAGGTTGGAA-ATTGTAGGTCTTGTCTCCCTAAGTAGTAGCGGAGCAGATCGAAGATG
1 AGTGGAATAGGTT-GAAGATTGTAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATG
* * *
36714172 TTGAATCTTATCTTCCCAAGACAGTGGAGAAGCAGATTTAAGTCATTAGTTCTATCTCCCTAAGT
65 GTGAATCTTATCTTCCCAAGACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGT
*
36714237 GGT
130 AGT
* * *
36714240 AGTGGAGTAGGTTGAAGATTGCAGAATC-TGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATG
1 AGTGGAATAGGTTGAAGATTGTAG-ATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATG
*
36714304 GTGAATCTTATCTTCCCAAGACAGTGGAGAAGTAGATTTAAGCCATTAGTCCTATCTCCCTAAGT
65 GTGAATCTTATCTTCCCAAGACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGT
36714369 AGT
130 AGT
* ** * * * *
36714372 AGTGGAATATGTCAAAGATTGTAGAT-TCTGTATCCCTAAGCAGTAGTGGAGCAGAACAAAGACG
1 AGTGGAATAGGTTGAAGATTGTAGATCT-TGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATG
36714436 GTGAATCTTATCTTCCCAAGA
65 GTGAATCTTATCTTCCCAAGA
36714457 TAGTAGGAAA
Statistics
Matches: 192, Mismatches: 21, Indels: 8
0.87 0.10 0.04
Matches are distributed among these distances:
131 5 0.03
132 185 0.96
133 2 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (132 bp):
AGTGGAATAGGTTGAAGATTGTAGATCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGG
TGAATCTTATCTTCCCAAGACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCTCCCTAAGTA
GT
Found at i:36716081 original size:2 final size:2
Alignment explanation
Indices: 36716018--36716061 Score: 52
Period size: 2 Copynumber: 21.5 Consensus size: 2
36716008 TTAATTAGTA
* * *
36716018 AT AT AT AT AT AT GT GT AT AT AT AT TT AT AT GAT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT
36716061 A
1 A
36716062 CTTTACACTT
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
2 35 0.95
3 2 0.05
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36716954 original size:107 final size:106
Alignment explanation
Indices: 36716727--36716924 Score: 301
Period size: 105 Copynumber: 1.9 Consensus size: 106
36716717 AAAAATAATA
* * *
36716727 AAGGTAATATTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTC
1 AAGGCAATGTTTTACGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGA-TTTTC
*
36716792 TCATTCAACCAAATAGCCGAATATCCTGCCAAAAATTTCAAAT
65 TCATTCAACCAAATAGCCAAATATCCT-CCAAAAATTTCAAAT
*
36716835 AAGGCAATGTTTTACGTTTGGAAATTCGAG-GAACGTGCCCTAATGTGCTGGGTTTCGA-TTTCT
1 AAGGCAATGTTTTACGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCT
* *
36716898 CGTTTAACCAAATAGCCAAATATCCTC
66 CATTCAACCAAATAGCCAAATATCCTC
36716925 TTGAATTTCA
Statistics
Matches: 83, Mismatches: 7, Indels: 4
0.88 0.07 0.04
Matches are distributed among these distances:
104 1 0.01
105 28 0.34
107 27 0.33
108 27 0.33
ACGTcount: A:0.29, C:0.19, G:0.19, T:0.32
Consensus pattern (106 bp):
AAGGCAATGTTTTACGTTTGGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTCT
CATTCAACCAAATAGCCAAATATCCTCCAAAAATTTCAAAT
Found at i:36727228 original size:18 final size:18
Alignment explanation
Indices: 36727205--36727244 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
36727195 CTCACAATAC
36727205 ACAGTTTGACAAATTAAT
1 ACAGTTTGACAAATTAAT
* *
36727223 ACAGTTTGCCATATTAAT
1 ACAGTTTGACAAATTAAT
36727241 ACAG
1 ACAG
36727245 ATCACCGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.40, C:0.15, G:0.12, T:0.33
Consensus pattern (18 bp):
ACAGTTTGACAAATTAAT
Found at i:36730959 original size:43 final size:43
Alignment explanation
Indices: 36730849--36731117 Score: 253
Period size: 43 Copynumber: 6.3 Consensus size: 43
36730839 TTTTAGAAAT
* *
36730849 AAACGCCTCTAAAGGTCATGACTTTTAGCGGCGCTTTTAT--A-
1 AAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTT-TCCAC
* *
36730890 AAAGCGCGGCTAAAAGTCATGACCTTTAGCGGCGCTTTTTCCAC
1 AAA-CGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTTCCAC
* * * * * *
36730934 AAACGCCGCTAAAGGCCAGGACCTTTCGCAGCAC-TTTTCACGC
1 AAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTTC-CAC
* * * *
36730977 AAACGCCACTAAAGGCCAGGACCTTTAGCGGCGCTTTTCCCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTTCCAC
* * * *
36731020 AAACGCCGCTAAAGATCATGACCTTTTGCGGCGCTTCTACCAC
1 AAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTTCCAC
** * * *
36731063 AAACGCAACTATAAAG-AATGACCTTTAGCGACGCTTTTT-CAC
1 AAACGCCGCTA-AAGGTCATGACCTTTAGCGGCGCTTTTTCCAC
36731105 AAACGCCGCTAAA
1 AAACGCCGCTAAA
36731118 AACATGACTT
Statistics
Matches: 185, Mismatches: 36, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
41 6 0.03
42 48 0.26
43 122 0.66
44 9 0.05
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGGTCATGACCTTTAGCGGCGCTTTTTCCAC
Found at i:36731086 original size:129 final size:128
Alignment explanation
Indices: 36730849--36731088 Score: 288
Period size: 129 Copynumber: 1.9 Consensus size: 128
36730839 TTTTAGAAAT
* * * * * *
36730849 AAACGCCTCTAAAGGTCATGACTTTTAGCGGCGCTTTTATAAAAGCGCGGCTAAAAGTCATGACC
1 AAACGCCACTAAAGGCCAGGACCTTTAGCGGCGCTTTTACAAAAGCGCCGCTAAAAGTCATGACC
* * ** * *
36730914 TTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGGCCAGGACCTTTCGCAGCACTTTTCACGC
66 TTTAGCGGCGCTTCTACCACAAACGCAACTAAAAGCAAGGACCTTTCGCAGCACTTTTCACGC
*
36730977 AAACGCCACTAAAGGCCAGGACCTTTAGCGGCGCTTTTCCCACAAA-CGCCGCT-AAAGATCATG
1 AAACGCCACTAAAGGCCAGGACCTTTAGCGGCGCTTTT-ACA-AAAGCGCCGCTAAAAG-TCATG
* *
36731040 ACCTTTTGCGGCGCTTCTACCACAAACGCAACTATAAAG-AATGACCTTT
63 ACCTTTAGCGGCGCTTCTACCACAAACGCAACTA-AAAGCAAGGACCTTT
36731089 AGCGACGCTT
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
128 38 0.41
129 49 0.53
130 6 0.06
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (128 bp):
AAACGCCACTAAAGGCCAGGACCTTTAGCGGCGCTTTTACAAAAGCGCCGCTAAAAGTCATGACC
TTTAGCGGCGCTTCTACCACAAACGCAACTAAAAGCAAGGACCTTTCGCAGCACTTTTCACGC
Found at i:36734951 original size:14 final size:14
Alignment explanation
Indices: 36734934--36734964 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
36734924 TCTTAATCTC
*
36734934 TAACCTCTAACCCT
1 TAACCCCTAACCCT
36734948 TAACCCCTAACCCT
1 TAACCCCTAACCCT
36734962 TAA
1 TAA
36734965 ACATTATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.32, C:0.42, G:0.00, T:0.26
Consensus pattern (14 bp):
TAACCCCTAACCCT
Found at i:36735664 original size:40 final size:40
Alignment explanation
Indices: 36735572--36735688 Score: 137
Period size: 40 Copynumber: 2.9 Consensus size: 40
36735562 GCTAAATCCC
*
36735572 GAGCATTAGC-AGCGCTTTTCCAAAAAACGCCACTAAAGCTTT
1 GAGCATTAGCGA-CGCTTTTCC-AAAAACGCCGCT-AAGCTTT
* ** *
36735614 AAGCGCTAGCGACGCTTTTCCAAAAACGCTGCTAAGCTTT
1 GAGCATTAGCGACGCTTTTCCAAAAACGCCGCTAAGCTTT
* *
36735654 GAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAA
1 GAGCATTAGCGACGCTTTTCCAAAAACGCCGCTAA
36735689 AGCCTCGAAA
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
40 36 0.57
41 10 0.16
42 16 0.25
43 1 0.02
ACGTcount: A:0.30, C:0.26, G:0.20, T:0.24
Consensus pattern (40 bp):
GAGCATTAGCGACGCTTTTCCAAAAACGCCGCTAAGCTTT
Found at i:36735823 original size:40 final size:40
Alignment explanation
Indices: 36735729--36735858 Score: 140
Period size: 40 Copynumber: 3.3 Consensus size: 40
36735719 TGGGCTTAGG
* * *
36735729 TTTTTTGCGGCGCTTTTCTAAACAA-CGCTGCTAATGCTC--
1 TTTTTAGCGGCGTTTTTC-AAA-AAGCGCCGCTAATGCTCGA
36735768 TTTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGA
* * ** * *
36735808 TCTTTAGCGGTGTTTTTTGAAAAGCGCCTCTAATGCTTGA
1 TTTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGA
36735848 TTTTTAGCGGC
1 TTTTTAGCGGC
36735859 AATTTTTATC
Statistics
Matches: 77, Mismatches: 11, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
37 2 0.03
38 16 0.21
39 16 0.21
40 43 0.56
ACGTcount: A:0.19, C:0.22, G:0.22, T:0.38
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTTCAAAAAGCGCCGCTAATGCTCGA
Found at i:36738112 original size:20 final size:20
Alignment explanation
Indices: 36738068--36738139 Score: 65
Period size: 20 Copynumber: 3.5 Consensus size: 20
36738058 CTTTTATGGC
* * *
36738068 GCATTTTGTTAGCCTTTTTT
1 GCATTTTATTAGCCTTTGTG
*
36738088 TCATTTTATTAGCCTTTGTG
1 GCATTTTATTAGCCTTTGTG
*
36738108 GCATTTTGGATGA-CCTTTGTG
1 GCATTTT--ATTAGCCTTTGTG
*
36738129 GCATTCTATTA
1 GCATTTTATTA
36738140 AAATTTTGCG
Statistics
Matches: 42, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
19 3 0.07
20 22 0.52
21 14 0.33
22 3 0.07
ACGTcount: A:0.15, C:0.15, G:0.18, T:0.51
Consensus pattern (20 bp):
GCATTTTATTAGCCTTTGTG
Found at i:36740735 original size:28 final size:28
Alignment explanation
Indices: 36740704--36740759 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
36740694 ATTCCAAAAG
36740704 AACACTATTAGGATAACATTAGATTTAT
1 AACACTATTAGGATAACATTAGATTTAT
36740732 AACACTATTAGGATAACATTAGATTTAT
1 AACACTATTAGGATAACATTAGATTTAT
36740760 GTAATTAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.36
Consensus pattern (28 bp):
AACACTATTAGGATAACATTAGATTTAT
Found at i:36741987 original size:4 final size:4
Alignment explanation
Indices: 36741973--36742006 Score: 59
Period size: 4 Copynumber: 8.2 Consensus size: 4
36741963 ATTTTAAAAT
36741973 ATTA TATTA ATTA ATTA ATTA ATTA ATTA ATTA A
1 ATTA -ATTA ATTA ATTA ATTA ATTA ATTA ATTA A
36742007 CGAGAATTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 25 0.86
5 4 0.14
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (4 bp):
ATTA
Found at i:36748701 original size:12 final size:12
Alignment explanation
Indices: 36748684--36748708 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36748674 CAAATTTTAG
36748684 ATTTTAAAATTT
1 ATTTTAAAATTT
36748696 ATTTTAAAATTT
1 ATTTTAAAATTT
36748708 A
1 A
36748709 GAATTTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTTTAAAATTT
Found at i:36752866 original size:6 final size:6
Alignment explanation
Indices: 36752852--36752917 Score: 123
Period size: 6 Copynumber: 11.0 Consensus size: 6
36752842 GCAAATGGAT
*
36752852 CATTTC CATTCC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC
1 CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC CATTTC
36752900 CATTTC CATTTC CATTTC
1 CATTTC CATTTC CATTTC
36752918 AAAATGATTC
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 58 1.00
ACGTcount: A:0.17, C:0.35, G:0.00, T:0.48
Consensus pattern (6 bp):
CATTTC
Found at i:36757186 original size:11 final size:10
Alignment explanation
Indices: 36757172--36757257 Score: 63
Period size: 11 Copynumber: 8.6 Consensus size: 10
36757162 TAAATAATAA
36757172 ATAATTTAAT
1 ATAATTTAAT
36757182 CATAATTTAAT
1 -ATAATTTAAT
36757193 ATAA-TT-AT
1 ATAATTTAAT
*
36757201 -T-ATTGAAT
1 ATAATTTAAT
36757209 ATAATTTAAT
1 ATAATTTAAT
* * *
36757219 AAAAATAATAT
1 ATAATTTA-AT
36757230 ATAATTTAAT
1 ATAATTTAAT
*
36757240 AATATTTTTAAT
1 -ATA-ATTTAAT
36757252 ATAATT
1 ATAATT
36757258 ATTTTTATAA
Statistics
Matches: 58, Mismatches: 10, Indels: 15
0.70 0.12 0.18
Matches are distributed among these distances:
6 1 0.02
7 2 0.03
8 4 0.07
9 3 0.05
10 19 0.33
11 23 0.40
12 6 0.10
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (10 bp):
ATAATTTAAT
Found at i:36757193 original size:26 final size:25
Alignment explanation
Indices: 36757164--36757243 Score: 80
Period size: 26 Copynumber: 3.3 Consensus size: 25
36757154 TTAAATTATA
36757164 AATAATAAATAATTTAATCATAATTT
1 AATAATAAATAATTTAAT-ATAATTT
* *
36757190 AAT-ATAATTATTATTGAATATAATTT
1 AATAATAA--ATAATTTAATATAATTT
36757216 AATAA-AAATAA--T-ATATAATTT
1 AATAATAAATAATTTAATATAATTT
36757237 AATAATA
1 AATAATA
36757244 TTTTTAATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
21 14 0.30
22 1 0.02
24 3 0.07
25 4 0.09
26 15 0.33
27 9 0.20
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.42
Consensus pattern (25 bp):
AATAATAAATAATTTAATATAATTT
Found at i:36757198 original size:21 final size:20
Alignment explanation
Indices: 36757172--36757257 Score: 63
Period size: 21 Copynumber: 4.3 Consensus size: 20
36757162 TAAATAATAA
36757172 ATAATTTAATCATAATTTAAT
1 ATAATTTAAT-ATAATTTAAT
*
36757193 ATAA-TT-AT-T-ATTGAAT
1 ATAATTTAATATAATTTAAT
* * *
36757209 ATAATTTAATAAAAATAATAT
1 ATAATTTAATATAATTTA-AT
*
36757230 ATAATTTAATAATATTTTTAAT
1 ATAATTTAAT-ATA-ATTTAAT
36757252 ATAATT
1 ATAATT
36757258 ATTTTTATAA
Statistics
Matches: 50, Mismatches: 8, Indels: 13
0.70 0.11 0.18
Matches are distributed among these distances:
16 10 0.20
17 3 0.06
18 2 0.04
19 2 0.04
20 5 0.10
21 16 0.32
22 10 0.20
23 2 0.04
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (20 bp):
ATAATTTAATATAATTTAAT
Found at i:36757256 original size:17 final size:18
Alignment explanation
Indices: 36757229--36757278 Score: 61
Period size: 17 Copynumber: 2.9 Consensus size: 18
36757219 AAAAATAATA
* *
36757229 TATAATTTAATAATATTT
1 TATAATATAATTATATTT
36757247 T-TAATATAATTAT-TTT
1 TATAATATAATTATATTT
36757263 TATAATA-AATTATATT
1 TATAATATAATTATATT
36757279 AAATTATATT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
16 10 0.36
17 17 0.61
18 1 0.04
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
TATAATATAATTATATTT
Found at i:36757281 original size:10 final size:10
Alignment explanation
Indices: 36757262--36757291 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
36757252 ATAATTATTT
*
36757262 TTATAATAAA
1 TTATATTAAA
36757272 TTATATTAAA
1 TTATATTAAA
36757282 TTATATTAAA
1 TTATATTAAA
36757292 ATATTTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (10 bp):
TTATATTAAA
Found at i:36757516 original size:22 final size:22
Alignment explanation
Indices: 36757486--36757528 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
36757476 ACACCAAAAC
*
36757486 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
*
36757508 AGGCCTTTAGCGGTGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
36757529 AGCGCCGCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.19, G:0.28, T:0.44
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Done.