Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 119 of 173
Found at i:36757857 original size:43 final size:42
Alignment explanation
Indices: 36757759--36758092 Score: 224
Period size: 43 Copynumber: 7.8 Consensus size: 42
36757749 AAGATCAGGG
* *
36757759 TCTTTAGCGGCGTTTTTATCC-CAAACGCCGC-AATAGACCCTGA-
1 TCTTTAGCGGCG-CTTTA-CCACAAACGCCGCTAA-AGAACCT-AT
* * * *
36757802 TCTATAGTGGCGCTTATACCAGAAACGCCACTAAAGAACCTAT
1 TCTTTAGCGGCGCTT-TACCACAAACGCCGCTAAAGAACCTAT
* ** *
36757845 TCTTTAGCGGCGCTTTCCCTGAAACGCCGC-AATAGACCCTGA-
1 TCTTTAGCGGCGCTTTACCACAAACGCCGCTAA-AGAACCT-AT
* *
36757887 TCTATAGCGACGCTTTGACCACAAACGCCGC-AATAG-ACTCTGA-
1 TCTTTAGCGGCGCTTT-ACCACAAACGCCGCTAA-AGAAC-CT-AT
* * * *
36757930 TCTGTAGCGGCGCTTCGACCACAAACGCCACTAAAGAACCTAA
1 TCTTTAGCGGCGCTT-TACCACAAACGCCGCTAAAGAACCTAT
36757973 TCTTTAGCGGCGCTTT-CTCACAAACGCCGCTAAAG-ACC-AT
1 TCTTTAGCGGCGCTTTAC-CACAAACGCCGCTAAAGAACCTAT
* * *
36758013 GATCTTTAGTGGCGCTTTTTCCACAAACGCCGCTAAAGACCCT-T
1 --TCTTTAGCGGCGC-TTTACCACAAACGCCGCTAAAGAACCTAT
* * *
36758057 ATCTTTAGCGGCTCTTTGACCAAAAACGCCACTAAA
1 -TCTTTAGCGGCGCTTT-ACCACAAACGCCGCTAAA
36758093 AAGGCCAACA
Statistics
Matches: 238, Mismatches: 33, Indels: 40
0.77 0.11 0.13
Matches are distributed among these distances:
40 1 0.00
41 6 0.03
42 70 0.29
43 151 0.63
44 10 0.04
ACGTcount: A:0.28, C:0.30, G:0.18, T:0.24
Consensus pattern (42 bp):
TCTTTAGCGGCGCTTTACCACAAACGCCGCTAAAGAACCTAT
Found at i:36757938 original size:85 final size:83
Alignment explanation
Indices: 36757780--36758092 Score: 296
Period size: 85 Copynumber: 3.7 Consensus size: 83
36757770 GTTTTTATCC
* * *
36757780 CAAACGCCGC-AATAGACCCTGATCTATAGTGGCGCTTATACCAGAAACGCCACTAAAGAACCT-
1 CAAACGCCGCTAA-AGACCCTGATCTATAGCGGCGCTT-TACCACAAACGCCGCTAAAG-ACCTG
*
36757843 ATTCTTTAGCGGCGCTTTCCCT
63 A-TCTTTAGCGGCGCTTTCCCA
* *
36757865 GAAACGCCGC-AATAGACCCTGATCTATAGCGACGCTTTGACCACAAACGCCGC-AATAGACTCT
1 CAAACGCCGCTAA-AGACCCTGATCTATAGCGGCGCTTT-ACCACAAACGCCGCTAA-AGAC-CT
*
36757928 GATCTGTAGCGGCGC-TTCGACCA
62 GATCTTTAGCGGCGCTTTC--CCA
* * * *
36757951 CAAACGCCACTAAAGAACCTAATCTTTAGCGGCGCTTT-CTCACAAACGCCGCTAAAGACCATGA
1 CAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTTAC-CACAAACGCCGCTAAAGACC-TGA
* *
36758015 TCTTTAGTGGCGCTTTTTCCA
64 TCTTTAGCGGCGC-TTTCCCA
* * * * *
36758036 CAAACGCCGCTAAAGACCCTTATCTTTAGCGGCTCTTTGACCAAAAACGCCACTAAA
1 CAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTT-ACCACAAACGCCGCTAAA
36758093 AAGGCCAACA
Statistics
Matches: 192, Mismatches: 22, Indels: 27
0.80 0.09 0.11
Matches are distributed among these distances:
84 10 0.05
85 129 0.67
86 48 0.25
87 5 0.03
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (83 bp):
CAAACGCCGCTAAAGACCCTGATCTATAGCGGCGCTTTACCACAAACGCCGCTAAAGACCTGATC
TTTAGCGGCGCTTTCCCA
Found at i:36757998 original size:128 final size:128
Alignment explanation
Indices: 36757780--36758092 Score: 405
Period size: 128 Copynumber: 2.4 Consensus size: 128
36757770 GTTTTTATCC
* * * *
36757780 CAAACGCCGCAATAGACCCTGATCTATAGTGGCGCTTATACCAGAAACGCCACTAAAGAACCTAT
1 CAAACGCCGCAATAGACCCTGATCTATAGCGGCGCTTAGACCAAAAACGCCACTAAAGAACCTAA
** *
36757845 TCTTTAGCGGCGCTTTCCCTGAAACGCCGC-AATAGACCCTGATCTATAGCGACGCTTTGACCA
66 TCTTTAGCGGCGCTTTCCCACAAACGCCGCTAA-AGACCATGATCTATAGCGACGCTTTGACCA
* * * *
36757908 CAAACGCCGCAATAGACTCTGATCTGTAGCGGCGCTTCGACCACAAACGCCACTAAAGAACCTAA
1 CAAACGCCGCAATAGACCCTGATCTATAGCGGCGCTTAGACCAAAAACGCCACTAAAGAACCTAA
* * * * **
36757973 TCTTTAGCGGCGCTTTCTCACAAACGCCGCTAAAGACCATGATCTTTAGTGGCGCTTTTTCCA
66 TCTTTAGCGGCGCTTTCCCACAAACGCCGCTAAAGACCATGATCTATAGCGACGCTTTGACCA
* * * *
36758036 CAAACGCCGCTAA-AGACCCTTATCTTTAGCGGCTCTTTGACCAAAAACGCCACTAAA
1 CAAACGCCGC-AATAGACCCTGATCTATAGCGGCGCTTAGACCAAAAACGCCACTAAA
36758093 AAGGCCAACA
Statistics
Matches: 161, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
128 157 0.98
129 4 0.02
ACGTcount: A:0.29, C:0.31, G:0.18, T:0.22
Consensus pattern (128 bp):
CAAACGCCGCAATAGACCCTGATCTATAGCGGCGCTTAGACCAAAAACGCCACTAAAGAACCTAA
TCTTTAGCGGCGCTTTCCCACAAACGCCGCTAAAGACCATGATCTATAGCGACGCTTTGACCA
Found at i:36758496 original size:21 final size:21
Alignment explanation
Indices: 36758446--36758508 Score: 81
Period size: 21 Copynumber: 3.0 Consensus size: 21
36758436 TTTGACGCTA
* *
36758446 CTCTACTTCCCTCGCTGCAGC
1 CTCTACTTCTCTCGCTGCCGC
*
36758467 CTGTACTTCTCTCGCTGCCGC
1 CTCTACTTCTCTCGCTGCCGC
* *
36758488 CTCTGCTTCTCTTGCTGCCGC
1 CTCTACTTCTCTCGCTGCCGC
36758509 ATCTGCTTTA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.05, C:0.44, G:0.17, T:0.33
Consensus pattern (21 bp):
CTCTACTTCTCTCGCTGCCGC
Found at i:36758513 original size:21 final size:21
Alignment explanation
Indices: 36758472--36758516 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
36758462 GCAGCCTGTA
*
36758472 CTTCTCTCGCTGCCGCCTCTG
1 CTTCTCTCGCTGCCGCATCTG
*
36758493 CTTCTCTTGCTGCCGCATCTG
1 CTTCTCTCGCTGCCGCATCTG
36758514 CTT
1 CTT
36758517 TAAGCTGCTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.02, C:0.42, G:0.18, T:0.38
Consensus pattern (21 bp):
CTTCTCTCGCTGCCGCATCTG
Found at i:36758571 original size:66 final size:66
Alignment explanation
Indices: 36758487--36758652 Score: 210
Period size: 66 Copynumber: 2.5 Consensus size: 66
36758477 CTCGCTGCCG
* * * *
36758487 CCTCTGCTTCTCTTGCTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTGTTCATA-CTTTTGTT
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGCTG-TAGCTGGAGTTCTTCATATCTTTT-TT
36758550 GAA
64 GAA
* *
36758553 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTCAGTTGTAGCTGGAGTTCTTCATATCTTTTTTGA
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTTTTGA
36758618 A
66 A
* * * *
36758619 CTTCAGCTTCTCTCGATGTTGCATCCGCTTTAAG
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAG
36758653 TTGTGTAATT
Statistics
Matches: 87, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
65 1 0.01
66 81 0.93
67 5 0.06
ACGTcount: A:0.13, C:0.27, G:0.19, T:0.41
Consensus pattern (66 bp):
CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGCTGTAGCTGGAGTTCTTCATATCTTTTTTGA
A
Found at i:36761278 original size:16 final size:16
Alignment explanation
Indices: 36761257--36761300 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
36761247 ATTAAGCTAC
36761257 GTAAGTTATGTATTAT
1 GTAAGTTATGTATTAT
*
36761273 GTAAGTTATTTATTAT
1 GTAAGTTATGTATTAT
* *
36761289 GAAAATTATGTA
1 GTAAGTTATGTA
36761301 AGTTGTGTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.36, C:0.00, G:0.16, T:0.48
Consensus pattern (16 bp):
GTAAGTTATGTATTAT
Found at i:36761296 original size:25 final size:25
Alignment explanation
Indices: 36761268--36761386 Score: 114
Period size: 25 Copynumber: 4.6 Consensus size: 25
36761258 TAAGTTATGT
36761268 ATTATGTAAGTTATTTATTATGAAA
1 ATTATGTAAGTTATTTATTATGAAA
* *
36761293 ATTATGTAAGTTGTGTATTATGAAAA
1 ATTATGTAAGTTATTTATTATG-AAA
* * *
36761319 GTATGCTATGTAAGTTATGTAAGT-TGTAA
1 --AT--TATGTAAGTTAT-TTATTATGAAA
*
36761348 GTTATGTAAGTTATTTATTATGAAA
1 ATTATGTAAGTTATTTATTATGAAA
*
36761373 ATTAAGTAAGTTAT
1 ATTATGTAAGTTAT
36761387 GTAATTTACG
Statistics
Matches: 74, Mismatches: 13, Indels: 14
0.73 0.13 0.14
Matches are distributed among these distances:
24 3 0.04
25 48 0.65
26 3 0.04
27 1 0.01
28 2 0.03
29 2 0.03
30 13 0.18
31 2 0.03
ACGTcount: A:0.37, C:0.01, G:0.18, T:0.45
Consensus pattern (25 bp):
ATTATGTAAGTTATTTATTATGAAA
Found at i:36761336 original size:55 final size:55
Alignment explanation
Indices: 36761270--36761373 Score: 138
Period size: 55 Copynumber: 1.9 Consensus size: 55
36761260 AGTTATGTAT
* * *
36761270 TATGTAAGTTAT-TTATTATGAAAATTATGTAAGTTGTGTATTATGAAAAGTATGC
1 TATGTAAGTTATGTAAGT-TGAAAATTATGTAAGTTATGTATTATGAAAAGTATGC
* * *
36761325 TATGTAAGTTATGTAAGTTGTAAGTTATGTAAGTTATTTATTATGAAAA
1 TATGTAAGTTATGTAAGTTGAAAATTATGTAAGTTATGTATTATGAAAA
36761374 TTAAGTAAGT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
55 39 0.93
56 3 0.07
ACGTcount: A:0.37, C:0.01, G:0.18, T:0.44
Consensus pattern (55 bp):
TATGTAAGTTATGTAAGTTGAAAATTATGTAAGTTATGTATTATGAAAAGTATGC
Found at i:36761337 original size:9 final size:9
Alignment explanation
Indices: 36761325--36761439 Score: 77
Period size: 9 Copynumber: 13.7 Consensus size: 9
36761315 AAAAGTATGC
36761325 TATGTAAGT
1 TATGTAAGT
36761334 TATGTAAG-
1 TATGTAAGT
36761342 T-TGTAAGT
1 TATGTAAGT
36761350 TATGTAAGT
1 TATGTAAGT
*
36761359 TAT-TTA-T
1 TATGTAAGT
* *
36761366 TATGAAAAT
1 TATGTAAGT
*
36761375 TAAGTAAGT
1 TATGTAAGT
*
36761384 TATGTAATT
1 TATGTAAGT
*
36761393 TACG-AA--
1 TATGTAAGT
* **
36761399 TATTTAAAAA
1 TATGT-AAGT
36761409 TATGTAAGT
1 TATGTAAGT
36761418 TATGTAAG-
1 TATGTAAGT
36761426 T-TGTAAGT
1 TATGTAAGT
36761434 TATGTA
1 TATGTA
36761440 TAATATTAAA
Statistics
Matches: 82, Mismatches: 14, Indels: 20
0.71 0.12 0.17
Matches are distributed among these distances:
6 2 0.02
7 16 0.20
8 11 0.13
9 49 0.60
10 4 0.05
ACGTcount: A:0.38, C:0.01, G:0.17, T:0.43
Consensus pattern (9 bp):
TATGTAAGT
Found at i:36761348 original size:16 final size:16
Alignment explanation
Indices: 36761327--36761439 Score: 70
Period size: 16 Copynumber: 6.8 Consensus size: 16
36761317 AAGTATGCTA
36761327 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
36761343 TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAGT
* * * *
36761359 TATTTA-TTATGAAAAT
1 T-GTAAGTTATGTAAGT
36761375 TAAGTAAGTTATGTAA-T
1 T--GTAAGTTATGTAAGT
* * * *
36761392 T-TACGAATATTTAAAAAT
1 TGTAAG-TTATGT--AAGT
36761410 ATGTAAGTTATGTAAGT
1 -TGTAAGTTATGTAAGT
36761427 TGTAAGTTATGTA
1 TGTAAGTTATGTA
36761440 TAATATTAAA
Statistics
Matches: 74, Mismatches: 14, Indels: 18
0.70 0.13 0.17
Matches are distributed among these distances:
14 3 0.04
15 4 0.05
16 39 0.53
17 12 0.16
18 8 0.11
19 5 0.07
20 3 0.04
ACGTcount: A:0.38, C:0.01, G:0.18, T:0.43
Consensus pattern (16 bp):
TGTAAGTTATGTAAGT
Found at i:36761445 original size:34 final size:34
Alignment explanation
Indices: 36761327--36761445 Score: 88
Period size: 34 Copynumber: 3.6 Consensus size: 34
36761317 AAGTATGCTA
*
36761327 TGTAAGTTATGT-AAGT-TGTAAGTTATGTAAGT
1 TGTAAGTTATGTAAAATATGTAAGTTATGTAAGT
* * *
36761359 TATTTA-TTATG-AAAATTAAGTAAGTTATGTAA-T
1 T-GTAAGTTATGTAAAA-TATGTAAGTTATGTAAGT
* * *
36761392 T-TACGAATATTTAAAAATATGTAAGTTATGTAAGT
1 TGTAAG-TTATGT-AAAATATGTAAGTTATGTAAGT
*
36761427 TGTAAGTTATGTATAATAT
1 TGTAAGTTATGTAAAATAT
36761446 TAAATAACTA
Statistics
Matches: 64, Mismatches: 13, Indels: 18
0.67 0.14 0.19
Matches are distributed among these distances:
31 1 0.02
32 8 0.12
33 8 0.12
34 34 0.53
35 10 0.16
36 3 0.05
ACGTcount: A:0.39, C:0.01, G:0.17, T:0.44
Consensus pattern (34 bp):
TGTAAGTTATGTAAAATATGTAAGTTATGTAAGT
Found at i:36761495 original size:31 final size:31
Alignment explanation
Indices: 36761419--36761883 Score: 404
Period size: 31 Copynumber: 15.5 Consensus size: 31
36761409 TATGTAAGTT
*
36761419 ATGTAAG-T-TGTAAGTTATGTATAATATTAA
1 ATGTAAGTTATGTAATTTATGTATAATATT-A
*
36761449 ATAACTAAGTTATGTAATTTATGTATAATATTA
1 AT--GTAAGTTATGTAATTTATGTATAATATTA
* * *
36761482 ATGTATGTTATGTAATTTATGTATATTAACTA
1 ATGTAAGTTATGTAATTTATGTATAAT-ATTA
* *
36761514 AT-TAAGTTATGTAATTTATGTATATTAACTA
1 ATGTAAGTTATGTAATTTATGTATAAT-ATTA
* *
36761545 AT-TAAGTTATGTAATTTATGTATATTAACTA
1 ATGTAAGTTATGTAATTTATGTATAAT-ATTA
* * * *
36761576 AT-TATGTTATGTAATTTATATATATTAACTA
1 ATGTAAGTTATGTAATTTATGTATAAT-ATTA
36761607 AT-TAAGTTATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
* *
36761637 ATGTAAGTTATGT-A-TAATAT-TAA-A-TA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
*
36761663 A-CTAAGTTATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
* * *
36761693 ATGTATGTTATGT-A--TA-ATATTA-ATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
* *
36761719 A-CTAAGTTATGTAATTTATGTAGAATATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
* * *
36761749 ATGTATGTTATGTAATTTATGTATATTAACTA
1 ATGTAAGTTATGTAATTTATGTATAAT-ATTA
*
36761781 AT-TAAGTTATGTAATTTATGTATAACATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
* *
36761811 ATGTAAGTTATGT-A--TA-ATATTA-ATTA
1 ATGTAAGTTATGTAATTTATGTATAATATTA
* * *
36761837 A-CTAAGTTATGTAATTTATGTATATTAACTA
1 ATGTAAGTTATGTAATTTATGTATAAT-ATTA
36761868 ATGTAAGTTATGTAAT
1 ATGTAAGTTATGTAAT
36761884 ATCTTATATT
Statistics
Matches: 364, Mismatches: 44, Indels: 52
0.79 0.10 0.11
Matches are distributed among these distances:
25 29 0.08
26 16 0.04
27 13 0.04
28 14 0.04
29 11 0.03
30 23 0.06
31 208 0.57
32 27 0.07
33 4 0.01
34 19 0.05
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.47
Consensus pattern (31 bp):
ATGTAAGTTATGTAATTTATGTATAATATTA
Found at i:36761640 original size:22 final size:22
Alignment explanation
Indices: 36761615--36761659 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
36761605 TAATTAAGTT
*
36761615 ATGTAATTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
36761637 ATGTAAGTTATGTATAATATTA
1 ATGTAAGTTATGTATAATATTA
36761659 A
1 A
36761660 ATAACTAAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.42, C:0.00, G:0.11, T:0.47
Consensus pattern (22 bp):
ATGTAAGTTATGTATAATATTA
Found at i:36761670 original size:56 final size:56
Alignment explanation
Indices: 36761535--36761881 Score: 426
Period size: 56 Copynumber: 6.0 Consensus size: 56
36761525 TAATTTATGT
* * * *
36761535 ATATTAACTAATTAAGTTATGTAATTTATGTATATTAACTAATT-ATGTTATGTAATTTATA
1 ATATTAACTAACTAAGTTATGTAATTTATG--TA-TAA-T-ATTAATG-TAAGTTATGTATA
*
36761596 TATATTAACTAATTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATA
1 -ATATTAACTAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATA
* *
36761653 ATATTAAATAACTAAGTTATGTAATTTATGTATAATATTAATGTATGTTATGTATA
1 ATATTAACTAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATA
* * *
36761709 ATATTAATTAACTAAGTTATGTAATTTATGTAGAATATTAATGTATGTTATGTAATTTA
1 ATATTAACTAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGT-A--TA
* *
36761768 TGTATATTAACTAATTAAGTTATGTAATTTATGTATAACATTAATGTAAGTTATGTATA
1 ---ATATTAACTAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATA
* * *
36761827 ATATTAATTAACTAAGTTATGTAATTTATGTATATTAACTAATGTAAGTTATGTA
1 ATATTAACTAACTAAGTTATGTAATTTATGTATAAT-ATTAATGTAAGTTATGTA
36761882 ATATCTTATA
Statistics
Matches: 259, Mismatches: 18, Indels: 21
0.87 0.06 0.07
Matches are distributed among these distances:
56 136 0.53
57 31 0.12
58 4 0.02
59 7 0.03
60 2 0.01
61 1 0.00
62 78 0.30
ACGTcount: A:0.40, C:0.03, G:0.11, T:0.47
Consensus pattern (56 bp):
ATATTAACTAACTAAGTTATGTAATTTATGTATAATATTAATGTAAGTTATGTATA
Found at i:36761752 original size:22 final size:21
Alignment explanation
Indices: 36761727--36761834 Score: 66
Period size: 22 Copynumber: 5.1 Consensus size: 21
36761717 TAACTAAGTT
36761727 ATGTAATTTATGTAGAATATTA
1 ATGTAATTTATGTA-AATATTA
36761749 ATGT-ATGTTATGT-AAT-TT-
1 ATGTAAT-TTATGTAAATATTA
** *
36761767 ATGT-ATATTAACTAATTAAGTT-
1 ATGTAAT-TTATGTAAAT-A-TTA
*
36761789 ATGTAATTTATGTATAACATTA
1 ATGTAATTTATGTA-AATATTA
*
36761811 ATGTAAGTTATGTATAATATTA
1 ATGTAATTTATGTA-AATATTA
36761833 AT
1 AT
36761835 TAACTAAGTT
Statistics
Matches: 68, Mismatches: 10, Indels: 16
0.72 0.11 0.17
Matches are distributed among these distances:
18 10 0.15
19 4 0.06
20 3 0.04
21 4 0.06
22 44 0.65
23 3 0.04
ACGTcount: A:0.39, C:0.02, G:0.12, T:0.47
Consensus pattern (21 bp):
ATGTAATTTATGTAAATATTA
Found at i:36761758 original size:174 final size:176
Alignment explanation
Indices: 36761460--36761881 Score: 588
Period size: 174 Copynumber: 2.4 Consensus size: 176
36761450 TAACTAAGTT
* * *
36761460 ATGTAATTTATGTATAATATT-AAT--GTATGTTATGTAATTTATGTATATTAACTAATTAA-GT
1 ATGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATG--TA-TAA-TAATTAATG-
* * * * * *
36761521 TATGTAATTTATGTATATTAACTAATTAAGTTATGTAATTTATGTATATTAACTAATTATGTTAT
61 TATGTTATGTATGAATATTAACTAACTAAGTTATGTAATTTATGTAGAATAACTAATTATGTTAT
*
36761586 GTAATTTATATATATTAACTAATTAAGTTATGTAATTTATGTATAATATTA
126 GTAATTTATATATATTAACTAATTAAGTTATGTAATTTATGTATAACATTA
36761637 ATGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATAAT-ATTAATGTATGT
1 ATGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATAATAATTAATGTATGT
* *
36761701 TATGTAT-AATATTAATTAACTAAGTTATGTAATTTATGTAGAAT-ATTAATGTATGTTATGTAA
66 TATGTATGAATATTAACTAACTAAGTTATGTAATTTATGTAGAATAACTAAT-TATGTTATGTAA
*
36761764 TTTATGTATATTAACTAATTAAGTTATGTAATTTATGTATAACATTA
130 TTTATATATATTAACTAATTAAGTTATGTAATTTATGTATAACATTA
* * * *
36761811 ATGTAAGTTATGTATAATATTAATTAACTAAGTTATGTAATTTATGTATATTAACTAATGTAAGT
1 ATGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATAATAATTAATGTATGT
36761876 TATGTA
66 TATGTA
36761882 ATATCTTATA
Statistics
Matches: 222, Mismatches: 17, Indels: 14
0.88 0.07 0.06
Matches are distributed among these distances:
173 5 0.02
174 139 0.63
175 31 0.14
176 2 0.01
177 23 0.10
178 5 0.02
180 17 0.08
ACGTcount: A:0.39, C:0.02, G:0.11, T:0.48
Consensus pattern (176 bp):
ATGTAAGTTATGTATAATATTAAATAACTAAGTTATGTAATTTATGTATAATAATTAATGTATGT
TATGTATGAATATTAACTAACTAAGTTATGTAATTTATGTAGAATAACTAATTATGTTATGTAAT
TTATATATATTAACTAATTAAGTTATGTAATTTATGTATAACATTA
Found at i:36764768 original size:34 final size:36
Alignment explanation
Indices: 36764721--36764789 Score: 99
Period size: 35 Copynumber: 2.0 Consensus size: 36
36764711 CAACTTTTAA
*
36764721 TTTGTAATATTATAATATTT-ATTTT-TTGTATAAAG
1 TTTGAAATATTATAATATTTAATTTTATTG-ATAAAG
36764756 TTTGAAAT-TTATAATATTTAATTTTATTGATAAA
1 TTTGAAATATTATAATATTTAATTTTATTGATAAA
36764790 TAAATAAATT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
34 11 0.35
35 17 0.55
36 3 0.10
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (36 bp):
TTTGAAATATTATAATATTTAATTTTATTGATAAAG
Found at i:36765202 original size:169 final size:168
Alignment explanation
Indices: 36764869--36765210 Score: 605
Period size: 169 Copynumber: 2.0 Consensus size: 168
36764859 ATAAGAACAT
*
36764869 ATTTGATATAAAAATTAATAAAACTAATTAATCTAATAACTTAAACTCTAACATAACCGTTGAAA
1 ATTTTATATAAAAATTAATAAAACTAATTAATCTAATAACTTAAACTCTAACATAACCGTTGAAA
*
36764934 CCCTAAACCCCAAACTATAACCCCCTAACTCCTTACCCCTAAATCCCCTAACCCCTAAAGCATAA
66 CCCTAAACCCCAAACCATAACCCCCTAACTCCTTACCCCTAAATCCCCTAACCCCTAAAGCATAA
* *
36764999 CCCTTAAACCTTAAATCCCCCTAACCCCTAAACATCAA
131 CCCTTAAACCCTAAATCCCACTAACCCCTAAACATCAA
36765037 ATTTTATATAAAAATTAATAAAACTAATTAATCTAATAACTTAAACTCTAACATAACCGTTGAAA
1 ATTTTATATAAAAATTAATAAAACTAATTAATCTAATAACTTAAACTCTAACATAACCGTTGAAA
* *
36765102 CCCTAAACCCCAAATCCATAACCCCTTAAC-CACTTACCCCTAAATCCCCTAACCCCTAAAGTAT
66 CCCTAAACCCCAAA-CCATAACCCCCTAACTC-CTTACCCCTAAATCCCCTAACCCCTAAAGCAT
36765166 AACCCTTAAACCCTAAATCCCACTAACCCCTAAACATCAA
129 AACCCTTAAACCCTAAATCCCACTAACCCCTAAACATCAA
36765206 ATTTT
1 ATTTT
36765211 CAATTACACA
Statistics
Matches: 166, Mismatches: 6, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
168 79 0.48
169 87 0.52
ACGTcount: A:0.42, C:0.31, G:0.02, T:0.25
Consensus pattern (168 bp):
ATTTTATATAAAAATTAATAAAACTAATTAATCTAATAACTTAAACTCTAACATAACCGTTGAAA
CCCTAAACCCCAAACCATAACCCCCTAACTCCTTACCCCTAAATCCCCTAACCCCTAAAGCATAA
CCCTTAAACCCTAAATCCCACTAACCCCTAAACATCAA
Found at i:36766523 original size:15 final size:15
Alignment explanation
Indices: 36766503--36766540 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
36766493 TTGAAATTAA
36766503 CCCTAAATCT-TAAAC
1 CCCTAAATCTCT-AAC
*
36766518 CCCTAAACCTCTAAC
1 CCCTAAATCTCTAAC
36766533 CCCTAAAT
1 CCCTAAAT
36766541 TAACCTTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 19 0.95
16 1 0.05
ACGTcount: A:0.37, C:0.39, G:0.00, T:0.24
Consensus pattern (15 bp):
CCCTAAATCTCTAAC
Found at i:36767062 original size:41 final size:41
Alignment explanation
Indices: 36767017--36767333 Score: 397
Period size: 41 Copynumber: 7.8 Consensus size: 41
36767007 TTGTTACTAC
* * *
36767017 TAGCGGCGCTTCGGCAAAAACGCCGCTAAAGATCCGAGAAT
1 TAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCCGAGCAT
* * *
36767058 TAGCGGCACTT-GTATAAAAACGCCGCTAAAGACCCGAGCAT
1 TAGCGGCGCTTAG-ACAAAAACGCCGCTAAAGATCCGAGCAT
* * * *
36767099 TAGCGGCGCATAGACAAAAACGCTGCTCAAGACCCGAGCAT
1 TAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCCGAGCAT
*
36767140 TAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCGAGCAT
1 TAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCCGAGCAT
*
36767181 TAGCGGCGCATAGACAAAAACGCCGCTAAAGATCCGAGCAT
1 TAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCCGAGCAT
* ** * *
36767222 TAGCGGCGCTTAGACGAAATTGCCGCTAAAGATCGGGGCAT
1 TAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCCGAGCAT
* * * *
36767263 TAGCGGCGCATT-CAC-AAAACGCCACGAAAGATCGGAGCAT
1 TAGCGGCGC-TTAGACAAAAACGCCGCTAAAGATCCGAGCAT
*
36767303 TAGCGGCGCTTACACAAAAACGCCGCTAAAG
1 TAGCGGCGCTTAGACAAAAACGCCGCTAAAG
36767334 GTTTAAAAAA
Statistics
Matches: 244, Mismatches: 27, Indels: 10
0.87 0.10 0.04
Matches are distributed among these distances:
39 2 0.01
40 33 0.14
41 206 0.84
42 3 0.01
ACGTcount: A:0.34, C:0.27, G:0.25, T:0.14
Consensus pattern (41 bp):
TAGCGGCGCTTAGACAAAAACGCCGCTAAAGATCCGAGCAT
Found at i:36767464 original size:40 final size:40
Alignment explanation
Indices: 36767390--36767488 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
36767380 GGCGCTTTAT
* * **
36767390 ATAAAACGCCGCTAATTC-CTATTTTTAGCGGCGCTTCCGG
1 ATAAATCGCCGCTAATGCTCTACCTTTAGCGGCGCTT-CGG
* *
36767430 AT-AATCGCCGCTGATGCTCTACCTTTAGCGGCGCTTTGG
1 ATAAATCGCCGCTAATGCTCTACCTTTAGCGGCGCTTCGG
*
36767469 CTAAATCGCCGCTAATGCTC
1 ATAAATCGCCGCTAATGCTC
36767489 GATTTTTTGT
Statistics
Matches: 49, Mismatches: 8, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
39 15 0.31
40 34 0.69
ACGTcount: A:0.20, C:0.29, G:0.21, T:0.29
Consensus pattern (40 bp):
ATAAATCGCCGCTAATGCTCTACCTTTAGCGGCGCTTCGG
Found at i:36770015 original size:19 final size:19
Alignment explanation
Indices: 36769991--36770044 Score: 99
Period size: 19 Copynumber: 2.8 Consensus size: 19
36769981 AATCTTCAAG
36769991 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
36770010 GATATGTAATCTTAGATAT
1 GATATGCAATCTTAGATAT
36770029 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
36770045 AGATATGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.09, G:0.17, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:36770020 original size:36 final size:36
Alignment explanation
Indices: 36769980--36770051 Score: 94
Period size: 38 Copynumber: 2.0 Consensus size: 36
36769970 TATGGAAACA
36769980 TAATCTT-CA-AGGATATGCAATCTTAGATATGATATG
1 TAATCTTACATAGGATATGCAATCTTAGA-A-GATATG
* *
36770016 TAATCTTAGATATGATATGCAATCTTAGAAGATATG
1 TAATCTTACATAGGATATGCAATCTTAGAAGATATG
36770052 ATTTTGTAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
36 13 0.41
37 2 0.06
38 17 0.53
ACGTcount: A:0.38, C:0.10, G:0.17, T:0.36
Consensus pattern (36 bp):
TAATCTTACATAGGATATGCAATCTTAGAAGATATG
Found at i:36770035 original size:38 final size:40
Alignment explanation
Indices: 36769991--36770067 Score: 113
Period size: 38 Copynumber: 1.9 Consensus size: 40
36769981 AATCTTCAAG
36769991 GATATGCAATCTT-AGATATGA-TATGTAATCTTAGATAT
1 GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
*
36770029 GATATGCAATCTTAGAAGATATGATTTTGTAATCTTAGA
1 GATATGCAATCTT--AAGATATGATTATGTAATCTTAGA
36770068 GATTTAATTT
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 13 0.38
41 8 0.24
42 13 0.38
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (40 bp):
GATATGCAATCTTAAGATATGATTATGTAATCTTAGATAT
Found at i:36775647 original size:5 final size:5
Alignment explanation
Indices: 36775608--36775672 Score: 55
Period size: 5 Copynumber: 13.2 Consensus size: 5
36775598 TTTTTATGTT
* * *
36775608 TTATA -TATA TTAT- TT-TA TTATA TAATATA ATATA TTATA TTGTA TTGTA
1 TTATA TTATA TTATA TTATA TTATA T--TATA TTATA TTATA TTATA TTATA
*
36775657 TTGTA TTATA TTATA T
1 TTATA TTATA TTATA T
36775673 AAATTAAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
3 1 0.02
4 8 0.16
5 38 0.75
7 4 0.08
ACGTcount: A:0.37, C:0.00, G:0.05, T:0.58
Consensus pattern (5 bp):
TTATA
Found at i:36779735 original size:5 final size:5
Alignment explanation
Indices: 36779686--36779750 Score: 64
Period size: 5 Copynumber: 13.2 Consensus size: 5
36779676 TTTTTATGTT
* *
36779686 TTATA -TATA TTAT- TT-TA TTATA TAATATA ATATA ATATA TTATA TTATA
1 TTATA TTATA TTATA TTATA TTATA T--TATA TTATA TTATA TTATA TTATA
*
36779735 TTGTA TTATA TTATA T
1 TTATA TTATA TTATA T
36779751 AAATTAAATA
Statistics
Matches: 51, Mismatches: 4, Indels: 10
0.78 0.06 0.15
Matches are distributed among these distances:
3 1 0.02
4 8 0.16
5 38 0.75
7 4 0.08
ACGTcount: A:0.42, C:0.00, G:0.02, T:0.57
Consensus pattern (5 bp):
TTATA
Found at i:36780020 original size:16 final size:15
Alignment explanation
Indices: 36779994--36780024 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
36779984 GAAAATAGGG
36779994 GAAAAAAAAGGGAAA
1 GAAAAAAAAGGGAAA
36780009 GAAAAGAAAAGGGAAA
1 GAAAA-AAAAGGGAAA
36780025 ATTGAGATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (15 bp):
GAAAAAAAAGGGAAA
Found at i:36780669 original size:24 final size:23
Alignment explanation
Indices: 36780628--36780674 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
36780618 TATTCATGGG
36780628 ACATTTAAAGTAAGGTAAGTAATA
1 ACATTTAAAGTAAGGTAAG-AATA
*
36780652 ACATTTGAAATTAA-GTAAGAATA
1 ACATTT-AAAGTAAGGTAAGAATA
36780675 TGTGTGAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 4 0.19
24 11 0.52
25 6 0.29
ACGTcount: A:0.51, C:0.04, G:0.15, T:0.30
Consensus pattern (23 bp):
ACATTTAAAGTAAGGTAAGAATA
Found at i:36780975 original size:25 final size:23
Alignment explanation
Indices: 36780953--36780997 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
36780943 TTTAAATAAT
*
36780953 TTCGGGTGTGTTTAGGTTGAATA
1 TTCGGGTGTGTTTAGGTGGAATA
* *
36780976 TTCTGGTGTGTTTGGGTGGAAT
1 TTCGGGTGTGTTTAGGTGGAAT
36780998 CCTCGTATCT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.13, C:0.04, G:0.38, T:0.44
Consensus pattern (23 bp):
TTCGGGTGTGTTTAGGTGGAATA
Found at i:36782257 original size:14 final size:15
Alignment explanation
Indices: 36782231--36782263 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
36782221 TCCCAAGCTG
36782231 GGAAGGACCTTATGT
1 GGAAGGACCTTATGT
*
36782246 GGAAGG-CCTTATTT
1 GGAAGGACCTTATGT
36782260 GGAA
1 GGAA
36782264 AAGCGTCACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.12, G:0.33, T:0.27
Consensus pattern (15 bp):
GGAAGGACCTTATGT
Found at i:36783741 original size:88 final size:88
Alignment explanation
Indices: 36783591--36783789 Score: 301
Period size: 88 Copynumber: 2.3 Consensus size: 88
36783581 GTGAAGATAA
* * * *
36783591 CAGATCTTGCCTTCTTGCACCGACAGCGAAGCAGATCGAAGACACCAACCTTGCTTCCCTGGGTT
1 CAGATCTTGCCTTCATACACCGACAGCGAAGCAGATCGAAGACAACAACCTTGCCTCCCTGGGTT
* *
36783656 GTAGCGGAGCAGGTTAAAAATAG
66 GCAGCGAAGCAGGTTAAAAATAG
* * *
36783679 TAGATCTTGCCTTCATACACCGACAGCGAAGCAGATCGAAGACAATAGCCTTGCCTCCCTGGGTT
1 CAGATCTTGCCTTCATACACCGACAGCGAAGCAGATCGAAGACAACAACCTTGCCTCCCTGGGTT
36783744 GCAGCGAAGCAGGTTAAAAATAG
66 GCAGCGAAGCAGGTTAAAAATAG
36783767 CAGATCTTGCCTTTCA-ACACCGA
1 CAGATCTTGCC-TTCATACACCGA
36783790 TCTGTTTCGC
Statistics
Matches: 100, Mismatches: 10, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
88 96 0.96
89 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.23, T:0.22
Consensus pattern (88 bp):
CAGATCTTGCCTTCATACACCGACAGCGAAGCAGATCGAAGACAACAACCTTGCCTCCCTGGGTT
GCAGCGAAGCAGGTTAAAAATAG
Found at i:36783926 original size:161 final size:160
Alignment explanation
Indices: 36783639--36783940 Score: 444
Period size: 160 Copynumber: 1.9 Consensus size: 160
36783629 AAGACACCAA
* * * * *
36783639 CCTTGCTTCCCTGGGTTGTAGCGGAGCAGGTTAAAAATAGTAGATCTTGCCTTCATACACCGACA
1 CCTTGCCTCCCAGGGTTGCAGCGGAGCAGGTTAAAAATACTAGATCTTACCTTCATACACCGACA
* *
36783704 GCGAAGCAGATCGAAGACAATAGCCTTGCCTCCCTGGGTTGCAGCGAAGCAGGTTAAAAATAGCA
66 GCGAAACAGATCGAAGACAACAGCCTTGCCTCCCTGGGTTGCAGCGAAGCAGGTTAAAAATAGCA
36783769 GATCTTGCCTTTCAACACCGATCTGTTTCG
131 GATCTTGCCTTTCAACACCGATCTGTTTCG
* * * *
36783799 CCTTGCCTCCCAGGGTTGCAGCGGAGCTGGTTAAAAATTACT-GATCTTACCTTCCTGCATCGAC
1 CCTTGCCTCCCAGGGTTGCAGCGGAGCAGGTTAAAAA-TACTAGATCTTACCTTCATACACCGAC
* * * *
36783863 AGTGAAACAGATCGAAGACACCAGCCTTTGCCTCCCTGGGTTGTAGCGGAGCAGGTTAAAAATAG
65 AGCGAAACAGATCGAAGACAACAGCC-TTGCCTCCCTGGGTTGCAGCGAAGCAGGTTAAAAATAG
36783928 CAGATCTTGCCTT
129 CAGATCTTGCCTT
36783941 CCTGCACCGA
Statistics
Matches: 125, Mismatches: 15, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
160 73 0.58
161 52 0.42
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (160 bp):
CCTTGCCTCCCAGGGTTGCAGCGGAGCAGGTTAAAAATACTAGATCTTACCTTCATACACCGACA
GCGAAACAGATCGAAGACAACAGCCTTGCCTCCCTGGGTTGCAGCGAAGCAGGTTAAAAATAGCA
GATCTTGCCTTTCAACACCGATCTGTTTCG
Found at i:36784025 original size:44 final size:44
Alignment explanation
Indices: 36783890--36784032 Score: 119
Period size: 44 Copynumber: 3.2 Consensus size: 44
36783880 ACACCAGCCT
*
36783890 TTGCCTCCCTGGGTTGTAGCGGAGCAGGTTAAAAATAGCAGATC
1 TTGCCTCCCTGGGTTGTAGCGGAGCAGGTTAAAACTAGCAGATC
* **** * * * * * * *
36783934 TTGCCTTCCTGCACCGACAGCGAAGCAGATCGAAGAC-ACCA-ACC
1 TTGCCTCCCTGGGTTG-TAGCGGAGCAGGT-TAAAACTAGCAGATC
*
36783978 TTGCCTCCCTGGGTTGTAGTGGAGCAGGTTAAAACTAGCAGATC
1 TTGCCTCCCTGGGTTGTAGCGGAGCAGGTTAAAACTAGCAGATC
*
36784022 TTGCCTTCCTG
1 TTGCCTCCCTG
36784033 CACCGACAAG
Statistics
Matches: 68, Mismatches: 27, Indels: 8
0.66 0.26 0.08
Matches are distributed among these distances:
42 4 0.06
43 12 0.18
44 36 0.53
45 13 0.19
46 3 0.04
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.24
Consensus pattern (44 bp):
TTGCCTCCCTGGGTTGTAGCGGAGCAGGTTAAAACTAGCAGATC
Found at i:36784164 original size:88 final size:88
Alignment explanation
Indices: 36783798--36784153 Score: 464
Period size: 88 Copynumber: 4.0 Consensus size: 88
36783788 GATCTGTTTC
* * * * *
36783798 GCCTTGCCTCCCAGGGTTGCAGCGGAGCTGGTTAAAAATTA-CTGATCTTACCTTCCTGCATCGA
1 GCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAA-TAGCAGATCTTGCCTTCCTGCACCGA
* *
36783862 CAGTGAAACAGATCGAAGACACCA
65 CAGCGAAGCAGATCGAAGACACCA
*
36783886 GCCTTTGCCTCCCTGGGTTGTAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCGA
1 GCC-TTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCGA
36783951 CAGCGAAGCAGATCGAAGACACCA
65 CAGCGAAGCAGATCGAAGACACCA
* * * *
36783975 ACCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTAAAACTAGCAGATCTTGCCTTCCTGCACCGAC
1 GCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCGAC
* * *
36784040 AAG-AAAGTAGATCGAAAACACCA
66 -AGCGAAGCAGATCGAAGACACCA
* * * * * *
36784063 GCCTTGCCTCCCTGGGTTGCAGCGGAGCAAGTTAAAAATAGAAAATCTTTCCTTCTTGCACCGAT
1 GCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCGAC
* *
36784128 AGCGAAGCAGATCGATGACCCCA
66 AGCGAAGCAGATCGAAGACACCA
36784151 GCC
1 GCC
36784154 CTTTCTCCCT
Statistics
Matches: 235, Mismatches: 29, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
87 2 0.01
88 155 0.66
89 78 0.33
ACGTcount: A:0.27, C:0.28, G:0.24, T:0.22
Consensus pattern (88 bp):
GCCTTGCCTCCCTGGGTTGCAGCGGAGCAGGTTAAAAATAGCAGATCTTGCCTTCCTGCACCGAC
AGCGAAGCAGATCGAAGACACCA
Found at i:36784220 original size:44 final size:43
Alignment explanation
Indices: 36784157--36784273 Score: 137
Period size: 44 Copynumber: 2.7 Consensus size: 43
36784147 CCCAGCCCTT
* * *
36784157 TCTCCCTGACAGCAATGGAATAGGTTGAATATTGT-AAGTCCTA
1 TCTCCCTGGCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTA
*
36784200 TCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAATCCTA
1 TCTCCCTGG-CAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
* * *
36784244 TCTCACTGAGCAACAGTGGAGTAGGTTGAA
1 TCTCCCTG-GCAGCAGTGGAATAGGTTGAA
36784274 AATAGCAGAT
Statistics
Matches: 63, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
43 8 0.13
44 52 0.83
45 3 0.05
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.28
Consensus pattern (43 bp):
TCTCCCTGGCAGCAGTGGAATAGGTTGAAGATTGTGAATCCTA
Found at i:36784910 original size:44 final size:44
Alignment explanation
Indices: 36784637--36784965 Score: 212
Period size: 44 Copynumber: 7.5 Consensus size: 44
36784627 GAAGATGGCG
*
36784637 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAG-CTAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTC-AAT
* * * * * *
36784681 AATCCTATCTCCCTAAAGTCGTAGTGGAGCGGATTAAAATCACA-
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCA-AT
* * * * *
36784725 GATCTTATCTCTCTGAAGTTGCAG-AGAGCAGATCACA-TC--T
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAAT
* ** *
36784765 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCT-AAGT-AAGC
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAA-T
* * * * * * ****
36784808 AAGCCTTATC-CTCTTGAAGTTGTAGT-GAGGTAGACTGAAGATGGCG
1 AA-TCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGATTAAAG-TCAAT
*
36784854 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAAT
* * ** *
36784898 AATCCTATCTCCCTGAAGTTACAGTGGAGTGGATTAAAATCACAT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCA-AT
*
36784943 -ATCTTATCTCTCTGAAGTTGCAG
1 AATCTTATCTCCCTGAAGTTGCAG
36784966 AAAGCAGATC
Statistics
Matches: 215, Mismatches: 53, Indels: 34
0.71 0.18 0.11
Matches are distributed among these distances:
40 22 0.10
41 7 0.03
42 2 0.01
43 13 0.06
44 132 0.61
45 33 0.15
46 6 0.03
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGTCAAT
Found at i:36784997 original size:217 final size:218
Alignment explanation
Indices: 36784621--36785061 Score: 686
Period size: 217 Copynumber: 2.0 Consensus size: 218
36784611 TGCAATTTAA
* *
36784621 AAGACTGAAGATGGCGAATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCTAATAATCC
1 AAGACTGAAGATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCC
** *
36784686 TATCTCCCTAAAGTCGTAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAG
66 TATCTCCCTAAAGTCACAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAA
* * *
36784751 AGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGGCT-AAGTAAGCAAGCCTT
131 AGCAGATCACATCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCAAGCCTT
* * *
36784815 ATCCTCTTGAAGTTGTAGTGAGG
196 ATCCCCTTGAAATTGCAGTGAGG
*
36784838 TAGACTGAAGATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCC
1 AAGACTGAAGATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCC
* * * *
36784903 TATCTCCCTGAAGTTACAGTGGAGTGGATTAAAATCACATATCTTATCTCTCTGAAGTTGCAGAA
66 TATCTCCCTAAAGTCACAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAA
* * * *
36784968 AGCAGATCGCATCGGGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAATCAAGTCTT
131 AGCAGATCACATCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCAAGCCTT
*
36785033 ATCCCCTTGAAATTGCAGTGGGG
196 ATCCCCTTGAAATTGCAGTGAGG
36785056 AAGACT
1 AAGACT
36785062 AAATAAACAA
Statistics
Matches: 201, Mismatches: 22, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
217 165 0.82
218 36 0.18
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (218 bp):
AAGACTGAAGATGGCGAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAATAATCC
TATCTCCCTAAAGTCACAGTGGAGCGGATTAAAATCACAGATCTTATCTCTCTGAAGTTGCAGAA
AGCAGATCACATCGAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTCAAGAAAGCAAGCCTT
ATCCCCTTGAAATTGCAGTGAGG
Found at i:36785622 original size:17 final size:19
Alignment explanation
Indices: 36785600--36785700 Score: 89
Period size: 19 Copynumber: 5.4 Consensus size: 19
36785590 TACGGAAACA
36785600 TAATCTT-CA-AGGATATG
1 TAATCTTACATAGGATATG
* *
36785617 TAATCTTAGATATGATATG
1 TAATCTTACATAGGATATG
* *
36785636 TAATCTTAGATATGATATG
1 TAATCTTACATAGGATATG
* * * *
36785655 CAGTCTTAGATATGATATG
1 TAATCTTACATAGGATATG
* *
36785674 TAATCTTAGATATGATATG
1 TAATCTTACATAGGATATG
*
36785693 CAATCTTA
1 TAATCTTA
36785701 GAAGATATGA
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
17 7 0.09
18 1 0.01
19 67 0.89
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.40
Consensus pattern (19 bp):
TAATCTTACATAGGATATG
Found at i:36785635 original size:19 final size:19
Alignment explanation
Indices: 36785611--36785702 Score: 157
Period size: 19 Copynumber: 4.8 Consensus size: 19
36785601 AATCTTCAAG
36785611 GATATGTAATCTTAGATAT
1 GATATGTAATCTTAGATAT
36785630 GATATGTAATCTTAGATAT
1 GATATGTAATCTTAGATAT
* *
36785649 GATATGCAGTCTTAGATAT
1 GATATGTAATCTTAGATAT
36785668 GATATGTAATCTTAGATAT
1 GATATGTAATCTTAGATAT
*
36785687 GATATGCAATCTTAGA
1 GATATGTAATCTTAGA
36785703 AGATATGATT
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 68 1.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (19 bp):
GATATGTAATCTTAGATAT
Found at i:36785921 original size:23 final size:23
Alignment explanation
Indices: 36785877--36785921 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
36785867 TCTTATTTTG
* *
36785877 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
36785900 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
36785922 CAAATCCCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Found at i:36792084 original size:39 final size:39
Alignment explanation
Indices: 36792030--36792106 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
36792020 AGAGCTGGAT
*
36792030 GAATTTGAACCAGACAAACTTGACCCAGCCTGTTCACAA
1 GAATTTGAACCAGACAAACTTGACCCAGCCTGGTCACAA
*
36792069 GAATTTGAACCAGACAAATTTGACCCAGCCTGGTCACA
1 GAATTTGAACCAGACAAACTTGACCCAGCCTGGTCACA
36792107 TGACACCTGT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.35, C:0.27, G:0.17, T:0.21
Consensus pattern (39 bp):
GAATTTGAACCAGACAAACTTGACCCAGCCTGGTCACAA
Found at i:36795695 original size:41 final size:40
Alignment explanation
Indices: 36795588--36795724 Score: 141
Period size: 41 Copynumber: 3.4 Consensus size: 40
36795578 GATGCTAACG
** * * * *
36795588 GAAAAACGCAACAATAGGTAAAGCAGTAGCGGGGTTTATGA
1 GAAAAACGCCGCAAAAGGTCAAGCATTAGC-GGGTTTATAA
* *
36795629 GAAAAACACTGCAAAAGGTCAAGCATTAGCGGTGTTTATAA
1 GAAAAACGCCGCAAAAGGTCAAGCATTAGCGG-GTTTATAA
***
36795670 GAAAAACGCCGCAAAAGGTCAAGCATT-GTCGGCACTATAA
1 GAAAAACGCCGCAAAAGGTCAAGCATTAG-CGGGTTTATAA
36795710 GAAAAACGCCGCAAA
1 GAAAAACGCCGCAAA
36795725 GTATCATTTT
Statistics
Matches: 82, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
40 23 0.28
41 59 0.72
ACGTcount: A:0.42, C:0.18, G:0.24, T:0.16
Consensus pattern (40 bp):
GAAAAACGCCGCAAAAGGTCAAGCATTAGCGGGTTTATAA
Found at i:36798166 original size:41 final size:38
Alignment explanation
Indices: 36798121--36798251 Score: 122
Period size: 39 Copynumber: 3.3 Consensus size: 38
36798111 AACGGTATTT
*
36798121 TTAGCGGCGTTTGGACAAAAAACGCCGCTAAAAATTGAGCA
1 TTAGCGGCGTTT-GA-AAAAAACGCCGCT-AAAATAGAGCA
* ** *
36798162 TTAGCGGCGCTTTTAGGAAAACGCCGCTAAAATAGGGCA
1 TTAGCGGCG-TTTGAAAAAAACGCCGCTAAAATAGAGCA
* *
36798201 TTAGCGGTGCTTTTTGAAAAATA--CCGCTAAAATAGAGCA
1 TTAGC-G-GC-GTTTGAAAAAAACGCCGCTAAAATAGAGCA
36798240 TTAGCGGCGTTT
1 TTAGCGGCGTTT
36798252 TCCAAGAAGC
Statistics
Matches: 74, Mismatches: 12, Indels: 13
0.75 0.12 0.13
Matches are distributed among these distances:
36 3 0.04
37 2 0.03
38 1 0.01
39 34 0.46
40 12 0.16
41 19 0.26
42 3 0.04
ACGTcount: A:0.32, C:0.18, G:0.25, T:0.24
Consensus pattern (38 bp):
TTAGCGGCGTTTGAAAAAAACGCCGCTAAAATAGAGCA
Found at i:36798205 original size:39 final size:39
Alignment explanation
Indices: 36798138--36798252 Score: 151
Period size: 39 Copynumber: 2.9 Consensus size: 39
36798128 CGTTTGGACA
*
36798138 AAAAACGCCGCTAAAAATTGAGCATTAGCGGCGCTTTTAG
1 AAAAACGCCGCT-AAAATAGAGCATTAGCGGCGCTTTTAG
* * * *
36798178 GAAAACGCCGCTAAAATAGGGCATTAGCGGTGCTTTTTG
1 AAAAACGCCGCTAAAATAGAGCATTAGCGGCGCTTTTAG
**
36798217 AAAAATACCGCTAAAATAGAGCATTAGCGGCG-TTTT
1 AAAAACGCCGCTAAAATAGAGCATTAGCGGCGCTTTT
36798253 CCAAGAAGCG
Statistics
Matches: 65, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
38 4 0.06
39 50 0.77
40 11 0.17
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.24
Consensus pattern (39 bp):
AAAAACGCCGCTAAAATAGAGCATTAGCGGCGCTTTTAG
Found at i:36798404 original size:41 final size:41
Alignment explanation
Indices: 36798310--36798404 Score: 93
Period size: 41 Copynumber: 2.3 Consensus size: 41
36798300 GCTTTCGAGG
* * ** *
36798310 ATTTAGCGGCG-TTTTAAAAAAGCGTCGCTAATGCTTGGGG
1 ATTTAGCGGCGTTTTTAAAAAAGCGCCGCGAATGCTCAGGA
* * * * *
36798350 CTTTAGTGACGTTTTTCAAAAAGCGCCGCGAATGCTCAGTA
1 ATTTAGCGGCGTTTTTAAAAAAGCGCCGCGAATGCTCAGGA
36798391 ATTTAGCGGCGTTT
1 ATTTAGCGGCGTTT
36798405 CCCAATAAGC
Statistics
Matches: 41, Mismatches: 13, Indels: 1
0.75 0.24 0.02
Matches are distributed among these distances:
40 8 0.20
41 33 0.80
ACGTcount: A:0.24, C:0.18, G:0.26, T:0.32
Consensus pattern (41 bp):
ATTTAGCGGCGTTTTTAAAAAAGCGCCGCGAATGCTCAGGA
Found at i:36798827 original size:14 final size:14
Alignment explanation
Indices: 36798808--36799004 Score: 116
Period size: 14 Copynumber: 13.9 Consensus size: 14
36798798 TATCACTATA
*
36798808 GTTTAGGGTTTTTG
1 GTTTAGGGTTTATG
*
36798822 GTTTAGGGTATATG
1 GTTTAGGGTTTATG
* *
36798836 GTTTAGAGTTTAAG
1 GTTTAGGGTTTATG
* **
36798850 GTTTAGGTTTTACCA
1 GTTTAGGGTTTA-TG
* *
36798865 TTTTAAGGTTTATG
1 GTTTAGGGTTTATG
*
36798879 GATTATGGGTTTATAG
1 GTTTA-GGGTTTAT-G
*
36798895 G--TATGGTTTATG
1 GTTTAGGGTTTATG
* *
36798907 GTTTATGGTTTAAAG
1 GTTTAGGGTTT-ATG
* * *
36798922 G-CTGGGGTTTAAG
1 GTTTAGGGTTTATG
36798935 GTTTAGAGG-TTATG
1 GTTTAG-GGTTTATG
*
36798949 TGTTAAGGGTTTATG
1 -GTTTAGGGTTTATG
*
36798964 GTTTTAGGGTTTTAGG
1 G-TTTAGGG-TTTATG
36798980 GTTTA-GGTTTATG
1 GTTTAGGGTTTATG
*
36798993 GTTTAGGATTTA
1 GTTTAGGGTTTA
36799005 GATTAACTAG
Statistics
Matches: 140, Mismatches: 30, Indels: 26
0.71 0.15 0.13
Matches are distributed among these distances:
12 2 0.01
13 21 0.15
14 68 0.49
15 41 0.29
16 8 0.06
ACGTcount: A:0.20, C:0.02, G:0.31, T:0.47
Consensus pattern (14 bp):
GTTTAGGGTTTATG
Found at i:36798908 original size:7 final size:7
Alignment explanation
Indices: 36798808--36798997 Score: 61
Period size: 7 Copynumber: 26.7 Consensus size: 7
36798798 TATCACTATA
*
36798808 GTTTAGG
1 GTTTATG
*
36798815 GTTTTTG
1 GTTTATG
*
36798822 GTTTAGG
1 GTTTATG
*
36798829 GTATATG
1 GTTTATG
36798836 GTTTA-G
1 GTTTATG
*
36798842 AGTTTAAG
1 -GTTTATG
36798850 GTTTA-G
1 GTTTATG
**
36798856 GTTTTACCA
1 G-TTTA-TG
* *
36798865 TTTTAAG
1 GTTTATG
36798872 GTTTATG
1 GTTTATG
*
36798879 GATTATGG
1 GTTTAT-G
36798887 GTTTATAG
1 GTTTAT-G
36798895 G--TATG
1 GTTTATG
36798900 GTTTATG
1 GTTTATG
36798907 GTTTATG
1 GTTTATG
*
36798914 GTTTAAAG
1 GTTT-ATG
* **
36798922 G-CTGGG
1 GTTTATG
*
36798928 GTTTAAG
1 GTTTATG
36798935 GTTTA-G
1 GTTTATG
*
36798941 AGGTTATG
1 -GTTTATG
* *
36798949 TGTTAAGG
1 -GTTTATG
36798957 GTTTATG
1 GTTTATG
*
36798964 GTTTTAGG
1 G-TTTATG
*
36798972 GTTTTAGG
1 G-TTTATG
36798980 GTTTA-G
1 GTTTATG
36798986 GTTTATG
1 GTTTATG
36798993 GTTTA
1 GTTTA
36798998 GGATTTAGAT
Statistics
Matches: 138, Mismatches: 31, Indels: 28
0.70 0.16 0.14
Matches are distributed among these distances:
5 2 0.01
6 15 0.11
7 86 0.62
8 35 0.25
ACGTcount: A:0.19, C:0.02, G:0.32, T:0.47
Consensus pattern (7 bp):
GTTTATG
Found at i:36798974 original size:29 final size:31
Alignment explanation
Indices: 36798926--36798996 Score: 78
Period size: 29 Copynumber: 2.4 Consensus size: 31
36798916 TTAAAGGCTG
* *
36798926 GGGTTTAAGG-TTTAGAGGTTAT-GTGTTAA
1 GGGTTTATGGTTTTAGAGGTTATAGGGTTAA
* *
36798955 GGGTTTATGGTTTTAG-GGTTTTAGGGTTTA
1 GGGTTTATGGTTTTAGAGGTTATAGGGTTAA
36798985 -GGTTTATGGTTT
1 GGGTTTATGGTTT
36798997 AGGATTTAGA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
29 26 0.72
30 10 0.28
ACGTcount: A:0.17, C:0.00, G:0.35, T:0.48
Consensus pattern (31 bp):
GGGTTTATGGTTTTAGAGGTTATAGGGTTAA
Found at i:36799071 original size:7 final size:7
Alignment explanation
Indices: 36799055--36799094 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
36799045 TATCATTATA
36799055 GTTTAGG
1 GTTTAGG
*
36799062 GTTTATG
1 GTTTAGG
36799069 GTTTAGG
1 GTTTAGG
* *
36799076 GTATATG
1 GTTTAGG
36799083 GTTTAGG
1 GTTTAGG
36799090 GTTTA
1 GTTTA
36799095 AGAGTTACTA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.17, C:0.00, G:0.35, T:0.47
Consensus pattern (7 bp):
GTTTAGG
Found at i:36799072 original size:14 final size:14
Alignment explanation
Indices: 36799050--36799094 Score: 72
Period size: 14 Copynumber: 3.2 Consensus size: 14
36799040 TTAATTATCA
*
36799050 TTATAGTTTAGGGT
1 TTATGGTTTAGGGT
36799064 TTATGGTTTAGGGT
1 TTATGGTTTAGGGT
*
36799078 ATATGGTTTAGGGT
1 TTATGGTTTAGGGT
36799092 TTA
1 TTA
36799095 AGAGTTACTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 28 1.00
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:36803571 original size:43 final size:43
Alignment explanation
Indices: 36803518--36803660 Score: 173
Period size: 43 Copynumber: 3.3 Consensus size: 43
36803508 TAAAAATCAT
* *
36803518 TCTTATAGCGGCGTTTGTGGTAGATGTGTCACTAAAGGTCATGA
1 TCTT-TAGCGGCGTTTGTGGTAGAAGCGTCACTAAAGGTCATGA
* *
36803562 TTTTTAGCGGCGTTTGTGGTAGAAGCGTCGCTAAAGGTCATGA
1 TCTTTAGCGGCGTTTGTGGTAGAAGCGTCACTAAAGGTCATGA
* * * * *
36803605 TCTTTAGCGGCGTTTGCGGAAGAAGCGCCGCTAAAGGCCATGA
1 TCTTTAGCGGCGTTTGTGGTAGAAGCGTCACTAAAGGTCATGA
*
36803648 -C-TTAGTGGCGTTT
1 TCTTTAGCGGCGTTT
36803661 TTTCTAATAA
Statistics
Matches: 89, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
41 11 0.12
42 1 0.01
43 74 0.83
44 3 0.03
ACGTcount: A:0.21, C:0.17, G:0.31, T:0.31
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTGTGGTAGAAGCGTCACTAAAGGTCATGA
Found at i:36803639 original size:86 final size:84
Alignment explanation
Indices: 36803479--36803647 Score: 187
Period size: 86 Copynumber: 2.0 Consensus size: 84
36803469 AAAAGTCATG
* * *
36803479 TTTTAGCGGCATTTGTGAAAAAGCGACGCTAAAAATCATTCTTATAGCGGCGTTTGTGGTAGATG
1 TTTTAGCGGCATTTGTGAAAAAGCGACGCTAAAAATCATTCTTATAGCGGCGTTTGCGGAAGAAG
* * *
36803544 TGTCACTAAAGGTCATGAT
66 CGCCACTAAAGGCCATGAT
* * * * **
36803563 TTTTAGCGGCGTTTGTGGTAGAAGCGTCGCTAAAGGTCATGATCTT-TAGCGGCGTTTGCGGAAG
1 TTTTAGCGGCATTTGT-GAAAAAGCGACGCTAAAAATCAT--TCTTATAGCGGCGTTTGCGGAAG
*
36803627 AAGCGCCGCTAAAGGCCATGA
63 AAGCGCCACTAAAGGCCATGA
36803648 CTTAGTGGCG
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
84 15 0.22
85 18 0.26
86 32 0.46
87 4 0.06
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (84 bp):
TTTTAGCGGCATTTGTGAAAAAGCGACGCTAAAAATCATTCTTATAGCGGCGTTTGCGGAAGAAG
CGCCACTAAAGGCCATGAT
Found at i:36803940 original size:35 final size:35
Alignment explanation
Indices: 36803895--36803961 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
36803885 AAATTTAAAG
*
36803895 ATGATAATCATAACTTATATAAACATTTAAAGTTT
1 ATGATAATCATAACTTACATAAACATTTAAAGTTT
*
36803930 ATGATTATCATAACTTACATAAACATTTAAAG
1 ATGATAATCATAACTTACATAAACATTTAAAG
36803962 AGTAAAAAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.37
Consensus pattern (35 bp):
ATGATAATCATAACTTACATAAACATTTAAAGTTT
Found at i:36804042 original size:56 final size:58
Alignment explanation
Indices: 36803972--36804140 Score: 159
Period size: 56 Copynumber: 3.1 Consensus size: 58
36803962 AGTAAAAAAA
**
36803972 AACTTTGGACCATAACTTATTTAACTTACATAA-TACATAATA-AT-ATATCATATCAT
1 AACTTTGGACCATAACTTACATAACTTACATAACTACATAATACATAATAT-ATATCAT
*
36804028 AACTTTGGATCATAACTTACATAACTTACATAACTTACATAATACATAAATATATATCAT
1 AACTTTGGACCATAACTTACATAACTTACATAAC-TACATAATACAT-AATATATATCAT
* *
36804088 -A---T----CATAACTTACATAACTTACATAACT-TA-AATA-AAAATATTATATCAT
1 AACTTTGGACCATAACTTACATAACTTACATAACTACATAATACATAATA-TATATCAT
36804136 AACTT
1 AACTT
36804141 ATATAAAAAT
Statistics
Matches: 98, Mismatches: 5, Indels: 24
0.77 0.04 0.19
Matches are distributed among these distances:
47 4 0.04
48 9 0.09
49 5 0.05
50 1 0.01
51 1 0.01
52 24 0.24
56 31 0.32
58 9 0.09
59 3 0.03
60 7 0.07
61 4 0.04
ACGTcount: A:0.46, C:0.16, G:0.02, T:0.36
Consensus pattern (58 bp):
AACTTTGGACCATAACTTACATAACTTACATAACTACATAATACATAATATATATCAT
Found at i:36804052 original size:9 final size:9
Alignment explanation
Indices: 36804038--36804121 Score: 93
Period size: 9 Copynumber: 9.6 Consensus size: 9
36804028 AACTTTGGAT
36804038 CATAACTTA
1 CATAACTTA
36804047 CATAACTTA
1 CATAACTTA
36804056 CATAACTTA
1 CATAACTTA
36804065 CATAA--TA
1 CATAACTTA
*
36804072 CATAA-ATA
1 CATAACTTA
* * *
36804080 TATATCATA
1 CATAACTTA
36804089 TCATAACTTA
1 -CATAACTTA
36804099 CATAACTTA
1 CATAACTTA
36804108 CATAACTTA
1 CATAACTTA
*
36804117 AATAA
1 CATAA
36804122 AAATATTATA
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
7 7 0.11
8 5 0.08
9 48 0.73
10 6 0.09
ACGTcount: A:0.49, C:0.18, G:0.00, T:0.33
Consensus pattern (9 bp):
CATAACTTA
Found at i:36804062 original size:65 final size:61
Alignment explanation
Indices: 36803982--36804121 Score: 201
Period size: 65 Copynumber: 2.2 Consensus size: 61
36803972 AACTTTGGAC
**
36803982 CATAACTTATTTAACTTACATAATACAT-AATAATATATCATATCATAACTTTGGATCATAACTT
1 CATAACTTAAATAACTTACATAATACATAAAT-ATATATCATATCATAAC-TT--A-CATAACTT
36804046 A
61 A
*
36804047 CATAACTTACATAACTTACATAATACATAAATATATATCATATCATAACTTACATAACTTA
1 CATAACTTAAATAACTTACATAATACATAAATATATATCATATCATAACTTACATAACTTA
36804108 CATAACTTAAATAA
1 CATAACTTAAATAA
36804122 AAATATTATA
Statistics
Matches: 71, Mismatches: 3, Indels: 6
0.89 0.04 0.08
Matches are distributed among these distances:
61 22 0.31
62 1 0.01
64 2 0.03
65 43 0.61
66 3 0.04
ACGTcount: A:0.46, C:0.16, G:0.01, T:0.36
Consensus pattern (61 bp):
CATAACTTAAATAACTTACATAATACATAAATATATATCATATCATAACTTACATAACTTA
Found at i:36804100 original size:43 final size:42
Alignment explanation
Indices: 36804047--36804146 Score: 139
Period size: 43 Copynumber: 2.3 Consensus size: 42
36804037 TCATAACTTA
*
36804047 CATAACTTACATAACTTACATAA-TACATAAATATATATCATAT
1 CATAACTTACATAACTTACATAACTAAATAAA-A-ATATCATAT
*
36804090 CATAACTTACATAACTTACATAACTTAAATAAAAATATTATAT
1 CATAACTTACATAACTTACATAAC-TAAATAAAAATATCATAT
*
36804133 CATAACTTATATAA
1 CATAACTTACATAA
36804147 AAATTTGGAT
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
43 44 0.85
44 1 0.02
45 7 0.13
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (42 bp):
CATAACTTACATAACTTACATAACTAAATAAAAATATCATAT
Found at i:36804158 original size:24 final size:25
Alignment explanation
Indices: 36804108--36804172 Score: 73
Period size: 25 Copynumber: 2.7 Consensus size: 25
36804098 ACATAACTTA
* *
36804108 CATAACTTAAATAAAAATATTATAT
1 CATAACTTATATAAAAATATTAGAT
*
36804133 CATAACTTATATAAAAAT-TTGGAT
1 CATAACTTATATAAAAATATTAGAT
*
36804157 CA-AA-ATATATAAAAAT
1 CATAACTTATATAAAAAT
36804173 CACAGAAATT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
22 11 0.31
23 2 0.06
24 6 0.17
25 17 0.47
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (25 bp):
CATAACTTATATAAAAATATTAGAT
Found at i:36809793 original size:66 final size:65
Alignment explanation
Indices: 36809681--36809809 Score: 161
Period size: 66 Copynumber: 2.0 Consensus size: 65
36809671 AAAGTGCTCA
* * * * *
36809681 ACTTAAAGCGGAGGCAGCATCGAGAGAAGCAGAGGATCAAAGAAAATATGAAGAACTCTAGCTGC
1 ACTTAAAGCAGAGGCAACAGCGAGAGAAGCAGAGGA-CAAAAAAAATATGAAGAACTCCAGCTGC
36809746 T
65 T
* *
36809747 ACTTAAAGCAGAGGCAACAGCGAGAGAAGTAGAGG-CAAGCAAAAAATATGACGAACTCCAGCT
1 ACTTAAAGCAGAGGCAACAGCGAGAGAAGCAGAGGACAA--AAAAAATATGAAGAACTCCAGCT
36809810 ACAGCTTCAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
64 3 0.06
66 51 0.94
ACGTcount: A:0.43, C:0.18, G:0.26, T:0.13
Consensus pattern (65 bp):
ACTTAAAGCAGAGGCAACAGCGAGAGAAGCAGAGGACAAAAAAAATATGAAGAACTCCAGCTGCT
Found at i:36810194 original size:43 final size:43
Alignment explanation
Indices: 36810108--36810204 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 43
36810098 TTTCCACAAA
* * **
36810108 CGCCGCCAAAGAACATGACTTTTATTGGCGCTTTTAGTAAAAG
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTAGTAAAAG
* *
36810151 CGCCGCTAAAGAACATGACCTTTAGCGGCGTTTTTGGGT-AAAG
1 CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTT-AGTAAAAG
36810194 CGCCGCTAAAG
1 CGCCGCTAAAG
36810205 GTAATGTTCT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
43 45 0.96
44 2 0.04
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (43 bp):
CGCCGCTAAAGAACATGACCTTTAGCGGCGCTTTTAGTAAAAG
Found at i:36810217 original size:43 final size:43
Alignment explanation
Indices: 36810147--36810314 Score: 146
Period size: 43 Copynumber: 3.9 Consensus size: 43
36810137 GCTTTTAGTA
* **
36810147 AAAGCGCCGCTAAA-GAACATGACCTTTAGCGGCGTTTTTGGG
1 AAAGCGCCGCTAAAGGTACATGTTCTTTAGCGGCGTTTTTGGG
* * *
36810189 TAAAGCGCCGCTAAAGGTA-ATGTTCTTTAGTGGCATTTGTAGGG
1 -AAAGCGCCGCTAAAGGTACATGTTCTTTAGCGGCGTTT-TTGGG
* * * * *
36810233 AAAGCGCAGCCAAAGG-ACATGTTCTCTAGCGGCGTTTGTGTG
1 AAAGCGCCGCTAAAGGTACATGTTCTTTAGCGGCGTTTTTGGG
* * * *
36810275 AGAAGTGTCGTTAAAGGT-CATGTTCTATAGCGGCGTTTTT
1 A-AAGCGCCGCTAAAGGTACATGTTCTTTAGCGGCGTTTTT
36810315 CCACATAAAC
Statistics
Matches: 99, Mismatches: 21, Indels: 10
0.76 0.16 0.08
Matches are distributed among these distances:
42 4 0.04
43 89 0.90
44 6 0.06
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGGTACATGTTCTTTAGCGGCGTTTTTGGG
Found at i:36818875 original size:16 final size:18
Alignment explanation
Indices: 36818840--36818877 Score: 53
Period size: 16 Copynumber: 2.2 Consensus size: 18
36818830 GATATTAATA
36818840 ATTCATTCCAAATATTTT
1 ATTCATTCCAAATATTTT
*
36818858 ATTCA-TCCAACT-TTTT
1 ATTCATTCCAAATATTTT
36818874 ATTC
1 ATTC
36818878 TCTCCCTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
16 8 0.42
17 6 0.32
18 5 0.26
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (18 bp):
ATTCATTCCAAATATTTT
Found at i:36820139 original size:20 final size:20
Alignment explanation
Indices: 36820114--36820152 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
36820104 AGTTTCTAAT
36820114 AATCAATTTTCATTGAGAAC
1 AATCAATTTTCATTGAGAAC
36820134 AATCAATTTTCATTGAGAA
1 AATCAATTTTCATTGAGAA
36820153 TAAGCAACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.36
Consensus pattern (20 bp):
AATCAATTTTCATTGAGAAC
Found at i:36823545 original size:19 final size:19
Alignment explanation
Indices: 36823521--36823559 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
36823511 ATGTCAAAAT
36823521 TTTCAAGTATCCAAAT-TGA
1 TTTCAAGTAT-CAAATGTGA
*
36823540 TTTCAATTATCAAATGTGA
1 TTTCAAGTATCAAATGTGA
36823559 T
1 T
36823560 AAATCAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 5 0.28
19 13 0.72
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (19 bp):
TTTCAAGTATCAAATGTGA
Found at i:36827484 original size:20 final size:20
Alignment explanation
Indices: 36827459--36827500 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
36827449 TAGAGAATGA
36827459 ATCAGGCAAACAATCAAAAG
1 ATCAGGCAAACAATCAAAAG
36827479 ATCAGGCAAACAATCAAAAG
1 ATCAGGCAAACAATCAAAAG
36827499 AT
1 AT
36827501 AACCAATGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.55, C:0.19, G:0.14, T:0.12
Consensus pattern (20 bp):
ATCAGGCAAACAATCAAAAG
Found at i:36829269 original size:18 final size:19
Alignment explanation
Indices: 36829242--36829277 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
36829232 CAACTAAAAA
36829242 AAAACATAAAAAGAAAACT
1 AAAACATAAAAAGAAAACT
36829261 AAAAC-TAAAAAGAAAAC
1 AAAACATAAAAAGAAAAC
36829278 AAATAAAATC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.75, C:0.11, G:0.06, T:0.08
Consensus pattern (19 bp):
AAAACATAAAAAGAAAACT
Found at i:36831518 original size:92 final size:92
Alignment explanation
Indices: 36831392--36831760 Score: 413
Period size: 92 Copynumber: 4.0 Consensus size: 92
36831382 CATCTTATAA
* * *
36831392 CACATCAGATGCACATAGTGCAAAGCCCGTAGGCTAAATAGTCTCCAC-CAATAACATGCCAGTT
1 CACACCAGATGCACATAGTACAAAGCCCGTAGGCTAAATATTCTCC-CTCAATAACATGCCAGTT
* *
36831456 AGCTCATAAAAGCTATTCCAACCGATAT
65 TGCTCATAAGAGCTATTCCAACCGATAT
* * * *
36831484 CACACCAGATGCACATAGTACAAAGCCCGTAGGCTAAATATTTTCCCCCAATAACACT-TCAGAT
1 CACACCAGATGCACATAGTACAAAGCCCGTAGGCTAAATATTCTCCCTCAATAACA-TGCCAGTT
*
36831548 TGCTCATAAGAGCTATTCCAACTGATA-
65 TGCTCATAAGAGCTATTCCAACCGATAT
* * * * * *** *
36831575 AATCGCTACATGCACATAGTGCAAAGCAAATAGGCTAAATATTCTCCCTCGATAACATGCCAGTT
1 CA-CACCAGATGCACATAGTACAAAGCCCGTAGGCTAAATATTCTCCCTCAATAACATGCCAGTT
* * * *
36831640 TGCTCGTAAGAGTTATTCCAATCGATAA
65 TGCTCATAAGAGCTATTCCAACCGATAT
* * * *
36831668 CACGCCAAATGCACATAGTACAAAGCTCGTAGGCTAAATATT-TCCCTCGATAACATGCCAGTTT
1 CACACCAGATGCACATAGTACAAAGCCCGTAGGCTAAATATTCTCCCTCAATAACATGCCAGTTT
* * *
36831732 GCTCATAATAGCTATTCAAACCAATAT
66 GCTCATAAGAGCTATTCCAACCGATAT
36831759 CA
1 CA
36831761 AGCCAAAATC
Statistics
Matches: 232, Mismatches: 40, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
91 47 0.20
92 183 0.79
93 2 0.01
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (92 bp):
CACACCAGATGCACATAGTACAAAGCCCGTAGGCTAAATATTCTCCCTCAATAACATGCCAGTTT
GCTCATAAGAGCTATTCCAACCGATAT
Found at i:36831709 original size:184 final size:183
Alignment explanation
Indices: 36831400--36831748 Score: 486
Period size: 184 Copynumber: 1.9 Consensus size: 183
36831390 AACACATCAG
***
36831400 ATGCACATAGTGCAAAGCCCGTAGGCTAAATAGTCTCCACCAATAACATGCCAGTTAGCTCATAA
1 ATGCACATAGTGCAAAGCAAATAGGCTAAATAGTCTCCACCAATAACATGCCAGTTAGCTCATAA
* *
36831465 AAGCTATTCCAACCGATATCACACCAGATGCACATAGTACAAAGCCCGTAGGCTAAATATTTTCC
66 AAGCTATTCCAACCGATAACACACCAAATGCACATAGTACAAAGCCCGTAGGCTAAATA-TTTCC
*
36831530 CCCAATAACACT-TCAGATTGCTCATAAGAGCTATTCCAACTGATAAATCGCTAC
130 CCCAATAACA-TGCCAGATTGCTCATAAGAGCTATTCCAACTGATAAATCGCTAC
* * * *
36831584 ATGCACATAGTGCAAAGCAAATAGGCTAAATATTCTCC-CTCGATAACATGCCAGTTTGCTCGTA
1 ATGCACATAGTGCAAAGCAAATAGGCTAAATAGTCTCCAC-CAATAACATGCCAGTTAGCTCATA
* * * * *
36831648 AGAGTTATTCCAATCGATAACACGCCAAATGCACATAGTACAAAGCTCGTAGGCTAAATATTTCC
65 AAAGCTATTCCAACCGATAACACACCAAATGCACATAGTACAAAGCCCGTAGGCTAAATATTTCC
* * * *
36831713 CTCGATAACATGCCAGTTTGCTCATAATAGCTATTC
130 CCCAATAACATGCCAGATTGCTCATAAGAGCTATTC
36831749 AAACCAATAT
Statistics
Matches: 144, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
182 1 0.01
183 35 0.24
184 108 0.75
ACGTcount: A:0.34, C:0.26, G:0.15, T:0.25
Consensus pattern (183 bp):
ATGCACATAGTGCAAAGCAAATAGGCTAAATAGTCTCCACCAATAACATGCCAGTTAGCTCATAA
AAGCTATTCCAACCGATAACACACCAAATGCACATAGTACAAAGCCCGTAGGCTAAATATTTCCC
CCAATAACATGCCAGATTGCTCATAAGAGCTATTCCAACTGATAAATCGCTAC
Found at i:36836613 original size:16 final size:16
Alignment explanation
Indices: 36836586--36836644 Score: 50
Period size: 16 Copynumber: 3.6 Consensus size: 16
36836576 CTTCTTCTTT
36836586 TTATTT-TTATTTTTC
1 TTATTTCTTATTTTTC
*
36836601 TTATTTCTTATTTCTTT
1 TTATTTCTTATTT-TTC
*
36836618 TTCATTTTCTTTGTTTTTC
1 TT-A-TTTC-TTATTTTTC
36836637 TT-TTTCTT
1 TTATTTCTT
36836645 GACTTTTGAT
Statistics
Matches: 36, Mismatches: 3, Indels: 10
0.73 0.06 0.20
Matches are distributed among these distances:
15 8 0.22
16 10 0.28
17 4 0.11
18 1 0.03
19 8 0.22
20 5 0.14
ACGTcount: A:0.08, C:0.12, G:0.02, T:0.78
Consensus pattern (16 bp):
TTATTTCTTATTTTTC
Found at i:36836619 original size:21 final size:21
Alignment explanation
Indices: 36836577--36836619 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
36836567 TTAATGTTCC
* *
36836577 TTCTTCTTTTTATTTTTATTT
1 TTCTTATTTTTATTTCTATTT
36836598 TTCTTATTTCTTATTTCT-TTT
1 TTCTTATTT-TTATTTCTATTT
36836619 T
1 T
36836620 CATTTTCTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.09, C:0.12, G:0.00, T:0.79
Consensus pattern (21 bp):
TTCTTATTTTTATTTCTATTT
Found at i:36836640 original size:6 final size:6
Alignment explanation
Indices: 36836580--36836644 Score: 62
Period size: 6 Copynumber: 10.8 Consensus size: 6
36836570 ATGTTCCTTC
* * *
36836580 TTCTTT TTATTT TTATTT TTCTTAT TTCTTAT TTCTTT TTCATT TTC--T
1 TTCTTT TTCTTT TTCTTT TTCTT-T TTCTT-T TTCTTT TTCTTT TTCTTT
*
36836628 TTGTTT TTCTTT TTCTT
1 TTCTTT TTCTTT TTCTT
36836645 GACTTTTGAT
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
4 3 0.06
6 35 0.69
7 13 0.25
ACGTcount: A:0.08, C:0.12, G:0.02, T:0.78
Consensus pattern (6 bp):
TTCTTT
Found at i:36840011 original size:12 final size:12
Alignment explanation
Indices: 36839994--36840033 Score: 53
Period size: 12 Copynumber: 3.1 Consensus size: 12
36839984 ACGATCATTC
36839994 TTCTTTTTATTT
1 TTCTTTTTATTT
36840006 TTCTTTTTATTAT
1 TTCTTTTTATT-T
36840019 TTCTTCTTTCATTT
1 TTCTT-TTT-ATTT
36840033 T
1 T
36840034 CATTTTCTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 11 0.44
13 6 0.24
14 5 0.20
15 3 0.12
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (12 bp):
TTCTTTTTATTT
Found at i:36844610 original size:91 final size:91
Alignment explanation
Indices: 36844469--36844774 Score: 389
Period size: 92 Copynumber: 3.3 Consensus size: 91
36844459 CTCCAGATTA
* * *
36844469 CTCATAAGAGTTATTCCCACCAATAACACACCAGATGCACATAGTGCAAAGCCTGTAGGCTAAAT
1 CTCATAAGAGCTATTCCAACCAATAACACGCCAGATGCACATAGTGCAAAGCCTGTAGGCTAAAT
36844534 ATTCTCCCCGGTAACACGTCAGTTTT
66 ATTCTCCCCGGTAACACGTCAGTTTT
* * ** *
36844560 CTCATAAGAGCTATTCCAACCAATATCACGCCAGATGCACATAGTACAAAGCCCATAGGATAAAT
1 CTCATAAGAGCTATTCCAACCAATAACACGCCAGATGCACATAGTGCAAAGCCTGTAGGCTAAAT
*** *
36844625 ATTCTCATTTGGTAACACGTCAGTTTG
66 ATTCTC-CCCGGTAACACGTCAGTTTT
* ** *
36844652 CTCATAAGAGCTATTCCAACCGATAACACGTTAGATGCACATAGTGTAAAG-CTCGTAGGCTAAA
1 CTCATAAGAGCTATTCCAACCAATAACACGCCAGATGCACATAGTGCAAAGCCT-GTAGGCTAAA
* * *
36844716 TATTCTCCCCCGATAACACGCCATTTTT
65 TATTCT-CCCCGGTAACACGTCAGTTTT
* *
36844744 CTCATAAGAACTATTCCAACCAATATCACGC
1 CTCATAAGAGCTATTCCAACCAATAACACGC
36844775 TAGAACCTCC
Statistics
Matches: 180, Mismatches: 32, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
91 64 0.36
92 115 0.64
93 1 0.01
ACGTcount: A:0.33, C:0.26, G:0.14, T:0.26
Consensus pattern (91 bp):
CTCATAAGAGCTATTCCAACCAATAACACGCCAGATGCACATAGTGCAAAGCCTGTAGGCTAAAT
ATTCTCCCCGGTAACACGTCAGTTTT
Found at i:36860538 original size:20 final size:23
Alignment explanation
Indices: 36860496--36860541 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 23
36860486 TAAATTTTCA
36860496 AAAATTGAAAACAAAAATATTTT
1 AAAATTGAAAACAAAAATATTTT
*
36860519 AAAATT-AAAA-AAAAGT-TTTT
1 AAAATTGAAAACAAAAATATTTT
36860539 AAA
1 AAA
36860542 CACTTTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 7 0.32
21 5 0.23
22 4 0.18
23 6 0.27
ACGTcount: A:0.63, C:0.02, G:0.04, T:0.30
Consensus pattern (23 bp):
AAAATTGAAAACAAAAATATTTT
Found at i:36864811 original size:17 final size:17
Alignment explanation
Indices: 36864789--36864845 Score: 96
Period size: 17 Copynumber: 3.4 Consensus size: 17
36864779 AAAATAGGGG
* *
36864789 TCACACGGTCATGTGCC
1 TCACACAGTCGTGTGCC
36864806 TCACACAGTCGTGTGCC
1 TCACACAGTCGTGTGCC
36864823 TCACACAGTCGTGTGCC
1 TCACACAGTCGTGTGCC
36864840 TCACAC
1 TCACAC
36864846 CCGTGTCTCA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 38 1.00
ACGTcount: A:0.19, C:0.37, G:0.21, T:0.23
Consensus pattern (17 bp):
TCACACAGTCGTGTGCC
Found at i:36865334 original size:26 final size:25
Alignment explanation
Indices: 36865305--36865355 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
36865295 TATAGGGGAC
* *
36865305 ACACGCCTGTGTGGTAAGGCCGTGTG
1 ACACGCCCGTGT-CTAAGGCCGTGTG
*
36865331 ACACGCCCGTGTCTTAGGCCGTGTG
1 ACACGCCCGTGTCTAAGGCCGTGTG
36865356 GGCATTCGAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.14, C:0.27, G:0.35, T:0.24
Consensus pattern (25 bp):
ACACGCCCGTGTCTAAGGCCGTGTG
Found at i:36867724 original size:20 final size:19
Alignment explanation
Indices: 36867676--36867724 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
36867666 ATTTATGAAA
* *
36867676 ATAACATATGTATATAGAT
1 ATAAAATATGTATATAAAT
*
36867695 ATATAGATATGTATATAAATT
1 ATA-AAATATGTATATAAA-T
36867716 ATAAAATAT
1 ATAAAATAT
36867725 AAAAAAATAC
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 3 0.12
20 18 0.72
21 4 0.16
ACGTcount: A:0.51, C:0.02, G:0.08, T:0.39
Consensus pattern (19 bp):
ATAAAATATGTATATAAAT
Found at i:36869522 original size:25 final size:25
Alignment explanation
Indices: 36869491--36869634 Score: 98
Period size: 25 Copynumber: 5.9 Consensus size: 25
36869481 AGCCCTCTTT
36869491 TGAGCCATATAACGGGAAGCTCATG
1 TGAGCCATATAACGGGAAGCTCATG
* * *
36869516 TGAGCCATGTAACGGGAAGCTTATC
1 TGAGCCATATAACGGGAAGCTCATG
* * * *
36869541 TGGGCTATATAACGAGAAGCTCATA
1 TGAGCCATATAACGGGAAGCTCATG
* * * **
36869566 AGAGCCATGT-TCAAGAAGCTCATG
1 TGAGCCATATAACGGGAAGCTCATG
* * * *
36869590 CGAGCCA-ATAACGCGTAGCTC-CG
1 TGAGCCATATAACGGGAAGCTCATG
*
36869613 AAGAGCCAT-TAACGGGAAGCTC
1 -TGAGCCATATAACGGGAAGCTC
36869635 CGGATAGTCA
Statistics
Matches: 90, Mismatches: 26, Indels: 7
0.73 0.21 0.06
Matches are distributed among these distances:
23 2 0.02
24 41 0.46
25 47 0.52
ACGTcount: A:0.32, C:0.22, G:0.26, T:0.19
Consensus pattern (25 bp):
TGAGCCATATAACGGGAAGCTCATG
Found at i:36869618 original size:24 final size:24
Alignment explanation
Indices: 36869591--36869636 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
36869581 AAGCTCATGC
*
36869591 GAGCCAATAACGCGTAGCTCCGAA
1 GAGCCAATAACGCGAAGCTCCGAA
* *
36869615 GAGCCATTAACGGGAAGCTCCG
1 GAGCCAATAACGCGAAGCTCCG
36869637 GATAGTCATA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.30, C:0.28, G:0.28, T:0.13
Consensus pattern (24 bp):
GAGCCAATAACGCGAAGCTCCGAA
Found at i:36870212 original size:5 final size:5
Alignment explanation
Indices: 36870183--36870221 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
36870173 TAAATTTAAC
* *
36870183 TCAAT TTAAT ACAAT TCATAT TCAAT TCAAT TCAAT TCA
1 TCAAT TCAAT TCAAT TCA-AT TCAAT TCAAT TCAAT TCA
36870222 CATATTAGGA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.18, G:0.00, T:0.41
Consensus pattern (5 bp):
TCAAT
Found at i:36877997 original size:4 final size:4
Alignment explanation
Indices: 36877988--36878043 Score: 62
Period size: 4 Copynumber: 14.0 Consensus size: 4
36877978 AGGAGAATAA
* *
36877988 AAAT AAAT AACAA AAAT AAAT AAAT AAAT AAAT -AA- AAAT AAAC AAAT
1 AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT
36878035 AAATT AAAT
1 AAA-T AAAT
36878044 TGAAAAACCA
Statistics
Matches: 44, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
3 4 0.09
4 33 0.75
5 7 0.16
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (4 bp):
AAAT
Found at i:36878027 original size:22 final size:22
Alignment explanation
Indices: 36877988--36878043 Score: 78
Period size: 22 Copynumber: 2.5 Consensus size: 22
36877978 AGGAGAATAA
* *
36877988 AAATAAAT-AACAAAAATAAAT
1 AAATAAATAAATAAAAATAAAC
36878009 AAATAAATAAATAAAAATAAAC
1 AAATAAATAAATAAAAATAAAC
36878031 AAATAAATTAAAT
1 AAATAAA-TAAAT
36878044 TGAAAAACCA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
21 8 0.26
22 18 0.58
23 5 0.16
ACGTcount: A:0.75, C:0.04, G:0.00, T:0.21
Consensus pattern (22 bp):
AAATAAATAAATAAAAATAAAC
Found at i:36878028 original size:18 final size:18
Alignment explanation
Indices: 36877983--36878038 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
36877973 AATTAAGGAG
36877983 AATAAAAATAAATAACA-A
1 AATAAAAATAAATAA-ATA
*
36878001 AA-ATAAATAAATAAATA
1 AATAAAAATAAATAAATA
*
36878018 AATAAAAATAAACAAATA
1 AATAAAAATAAATAAATA
36878036 AAT
1 AAT
36878039 TAAATTGAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 1 0.03
17 14 0.42
18 18 0.55
ACGTcount: A:0.77, C:0.04, G:0.00, T:0.20
Consensus pattern (18 bp):
AATAAAAATAAATAAATA
Found at i:36878540 original size:19 final size:19
Alignment explanation
Indices: 36878497--36878536 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
36878487 GATTAAGGAG
36878497 AATAAAAATAACAAAAATA
1 AATAAAAATAACAAAAATA
*
36878516 AATAAAAATAA-ACAAATA
1 AATAAAAATAACAAAAATA
36878534 AAT
1 AAT
36878537 TAAATCGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.78, C:0.05, G:0.00, T:0.17
Consensus pattern (19 bp):
AATAAAAATAACAAAAATA
Found at i:36878944 original size:493 final size:493
Alignment explanation
Indices: 36878005--36878978 Score: 1727
Period size: 493 Copynumber: 2.0 Consensus size: 493
36877995 TAACAAAAAT
* *
36878005 AAATAAATAAATAAATAAAAATAAACAAATAAATTAAATTGAAAAACCAATAAGGAAGATTAACT
1 AAATAAAAAAATAAATAAAAATAAACAAATAAATTAAATCGAAAAACCAATAAGGAAGATTAACT
*
36878070 CGCTTCAGGGTTTGTAACTAACTTCAGATTAGAGTTTTAGAATGGATTAGAAATCGATTAACTAA
66 CGCTTAAGGGTTTGTAACTAACTTCAGATTAGAGTTTTAGAATGGATTAGAAATCGATTAACTAA
*
36878135 TTATTACCTCCCGGCCTCAAATTAACGAGTAAATTGGTTGATACTCGCTTATCTCCCGACCTCAC
131 TTATTACCTCCCGACCTCAAATTAACGAGTAAATTGGTTGATACTCGCTTATCTCCCGACCTCAC
* *
36878200 TTTCTCAACCCGAATAAATTACAATTTACTTAGTTCGACTTATCTTCCGAACTCATCTAACCTGT
196 TTTCTCAACCCAAATAAATTACAATTTACTTAGTTCGACTTATCTTCCGAACTCATCTAACCTAT
*
36878265 GATAACTTATTAGGGTTGTGAAGCCTAACAATTTAAGAACACATAATTTATACCAACTAATCCTT
261 GATAAC---TTAGGGTTGTGAAACCTAACAATTTAAGAACACATAATTTATACCAACTAATCCTT
*
36878330 CTCGAGAAACCCCAAATCCTCCGTTAATCTCATCCCCATCCACTTGTTAATTTCCCTTAAGGGAT
323 CTCGAGAAACCCCAAATCCTCCATTAATCTCATCCCCATCCACTTGTTAATTTCCCTTAAGGGAT
* *
36878395 TTAGCCACTCATGTTATTCATAATCTCAATTTCAATTGAATAAACTATGTGAGAAACAGGATCGT
388 TTAGCCACTCAAGTTATTCATAATCTCAATTTCAATTGAATAAACTATGTGAGAAACACGATCGT
36878460 TTCGGAGAAAAAAAGGAGATTTGAATAGATTAAGGAGAATAA
453 TTCGGAG-AAAAAAGGAGATTTGAATAGATTAAGGAGAATAA
36878502 AAATAACAAAAATAAATAAAAATAAACAAATAAATTAAATCGAAAAACCAATAAGGAAGATTAAC
1 AAATAA-AAAAATAAATAAAAATAAACAAATAAATTAAATCGAAAAACCAATAAGGAAGATTAAC
* * *
36878567 TTGCTTAAGGGTTTGTAACTAACTTCAGATTAGAGTTTTAGAGTGGATTAGTAATCGATTAACTA
65 TCGCTTAAGGGTTTGTAACTAACTTCAGATTAGAGTTTTAGAATGGATTAGAAATCGATTAACTA
36878632 ATTATTACCTCCCGACCTCAAATTAACGAGTAAATTGGTTGATACTCGCTTATCT-CCGACCTCA
130 ATTATTACCTCCCGACCTCAAATTAACGAGTAAATTGGTTGATACTCGCTTATCTCCCGACCTCA
*
36878696 CTTTCTCAACCCAAATAAATTACAATTTACTTAGTTCGACTTATCTTCCGACCTCATCTAACCTA
195 CTTTCTCAACCCAAATAAATTACAATTTACTTAGTTCGACTTATCTTCCGAACTCATCTAACCTA
36878761 TGATAAC-TAGGGTTGTGAAACCTAACAATTTAAGAACACATAATTTATACCAACTAATCCTTCT
260 TGATAACTTAGGGTTGTGAAACCTAACAATTTAAGAACACATAATTTATACCAACTAATCCTTCT
36878825 CGAGAAACCCCAAATCCTCCATTAATCTCATCCCCATCCACTTGTTAATTTCCCTTAAGGGATTT
325 CGAGAAACCCCAAATCCTCCATTAATCTCATCCCCATCCACTTGTTAATTTCCCTTAAGGGATTT
*
36878890 AGCCACTCAAGTTATTCATAATCTCAATTTTAATTGAATAAACTATGTGAGAAACACGATCGTTT
390 AGCCACTCAAGTTATTCATAATCTCAATTTCAATTGAATAAACTATGTGAGAAACACGATCGTTT
* * *
36878955 TGGAGAGAAAATGAGATTTGAATA
455 CGGAGAAAAAAGGAGATTTGAATA
36878979 ATTGTGGATT
Statistics
Matches: 458, Mismatches: 18, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
492 17 0.04
493 186 0.41
497 84 0.18
498 171 0.37
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.31
Consensus pattern (493 bp):
AAATAAAAAAATAAATAAAAATAAACAAATAAATTAAATCGAAAAACCAATAAGGAAGATTAACT
CGCTTAAGGGTTTGTAACTAACTTCAGATTAGAGTTTTAGAATGGATTAGAAATCGATTAACTAA
TTATTACCTCCCGACCTCAAATTAACGAGTAAATTGGTTGATACTCGCTTATCTCCCGACCTCAC
TTTCTCAACCCAAATAAATTACAATTTACTTAGTTCGACTTATCTTCCGAACTCATCTAACCTAT
GATAACTTAGGGTTGTGAAACCTAACAATTTAAGAACACATAATTTATACCAACTAATCCTTCTC
GAGAAACCCCAAATCCTCCATTAATCTCATCCCCATCCACTTGTTAATTTCCCTTAAGGGATTTA
GCCACTCAAGTTATTCATAATCTCAATTTCAATTGAATAAACTATGTGAGAAACACGATCGTTTC
GGAGAAAAAAGGAGATTTGAATAGATTAAGGAGAATAA
Found at i:36884180 original size:24 final size:24
Alignment explanation
Indices: 36884153--36884207 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
36884143 TGTCTGTGGT
*
36884153 TAAATGATTGATTTGCCCGT-GATG
1 TAAATGAATGATTTGCCC-TAGATG
* *
36884177 TAAATAAATGATTTGTCCTAGATG
1 TAAATGAATGATTTGCCCTAGATG
36884201 TAAATGA
1 TAAATGA
36884208 CTATTTTATC
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
23 1 0.04
24 25 0.96
ACGTcount: A:0.35, C:0.09, G:0.20, T:0.36
Consensus pattern (24 bp):
TAAATGAATGATTTGCCCTAGATG
Found at i:36884281 original size:24 final size:24
Alignment explanation
Indices: 36884222--36884273 Score: 104
Period size: 24 Copynumber: 2.2 Consensus size: 24
36884212 TTTATCTATA
36884222 ATTTAAATGACTGATTTGTTTGTG
1 ATTTAAATGACTGATTTGTTTGTG
36884246 ATTTAAATGACTGATTTGTTTGTG
1 ATTTAAATGACTGATTTGTTTGTG
36884270 ATTT
1 ATTT
36884274 GTATGACTTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.25, C:0.04, G:0.19, T:0.52
Consensus pattern (24 bp):
ATTTAAATGACTGATTTGTTTGTG
Found at i:36884387 original size:27 final size:27
Alignment explanation
Indices: 36884349--36884413 Score: 91
Period size: 27 Copynumber: 2.4 Consensus size: 27
36884339 ATGGAGAAAG
36884349 TACTG-TACTGGTGGCTCT-GCCACA-A
1 TACTGTTACTGGTGGCT-TGGCCACATA
36884374 TCACTGTTACTGGTGGCTTGGCCACATA
1 T-ACTGTTACTGGTGGCTTGGCCACATA
36884402 TACTGTTACTGG
1 TACTGTTACTGG
36884414 AAGCTTTGCT
Statistics
Matches: 36, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.03
26 5 0.14
27 28 0.78
28 2 0.06
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.32
Consensus pattern (27 bp):
TACTGTTACTGGTGGCTTGGCCACATA
Found at i:36884419 original size:27 final size:27
Alignment explanation
Indices: 36884367--36884419 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
36884357 TGGTGGCTCT
**
36884367 GCCACAATCACTGTTACTGGTGGCTTG
1 GCCACAATCACTGTTACTGGAAGCTTG
36884394 GCCACATAT-ACTGTTACTGGAAGCTT
1 GCCACA-ATCACTGTTACTGGAAGCTT
36884420 TGCTGCGATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (27 bp):
GCCACAATCACTGTTACTGGAAGCTTG
Found at i:36888495 original size:27 final size:27
Alignment explanation
Indices: 36888462--36888528 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
36888452 GCAATATACG
* *
36888462 AAAGGAATGCCTTCATGGCAAACTTTA
1 AAAGGAATGCCTTCATGACAAACTCTA
*
36888489 AAGGGAATGCCTTCATGACAAACTCTA
1 AAAGGAATGCCTTCATGACAAACTCTA
36888516 AAAGGAATGCCTT
1 AAAGGAATGCCTT
36888529 GACGACGTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.37, C:0.19, G:0.19, T:0.24
Consensus pattern (27 bp):
AAAGGAATGCCTTCATGACAAACTCTA
Found at i:36911174 original size:39 final size:39
Alignment explanation
Indices: 36911119--36911298 Score: 216
Period size: 39 Copynumber: 4.6 Consensus size: 39
36911109 AACATGTTTT
* * *
36911119 TGAGTATTGTGGTATATGTTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * *
36911158 TGAGTATTGTGATATATGCCTGAATGTTATGTGATTGTA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* ** *
36911197 TGAGTATTGTTATATATGCTTAAACATTATGTAATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* *
36911236 TGAGTATTGTGATATATGCATAAAGGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * * *
36911275 TGTGTAATGTGATACATGTTTAAA
1 TGAGTATTGTGATATATGCTTAAA
36911299 AGTGAATATC
Statistics
Matches: 120, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
39 120 1.00
ACGTcount: A:0.31, C:0.03, G:0.22, T:0.44
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:36912066 original size:42 final size:42
Alignment explanation
Indices: 36912019--36912113 Score: 154
Period size: 42 Copynumber: 2.3 Consensus size: 42
36912009 TTTCCTAGTG
36912019 GTATCGATACCACTTGAGAGAATTACTGATACCATTGTTATA
1 GTATCGATACCACTTGAGAGAATTACTGATACCATTGTTATA
* * * *
36912061 GTATCGATACGACTTGAGAGAGTTATTGATACCTTTGTTATA
1 GTATCGATACCACTTGAGAGAATTACTGATACCATTGTTATA
36912103 GTATCGATACC
1 GTATCGATACC
36912114 TACATAATTG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.35
Consensus pattern (42 bp):
GTATCGATACCACTTGAGAGAATTACTGATACCATTGTTATA
Found at i:36912113 original size:20 final size:20
Alignment explanation
Indices: 36912046--36912114 Score: 59
Period size: 20 Copynumber: 3.4 Consensus size: 20
36912036 GAGAATTACT
*
36912046 GATACCATTGTTATAGTATC
1 GATACCTTTGTTATAGTATC
** * *
36912066 GATACGAC-TTGAGAGAGTTATT
1 GATAC--CTTTGTTATAG-TATC
36912088 GATACCTTTGTTATAGTATC
1 GATACCTTTGTTATAGTATC
36912108 GATACCT
1 GATACCT
36912115 ACATAATTGT
Statistics
Matches: 37, Mismatches: 8, Indels: 8
0.70 0.15 0.15
Matches are distributed among these distances:
20 16 0.43
21 12 0.32
22 9 0.24
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38
Consensus pattern (20 bp):
GATACCTTTGTTATAGTATC
Found at i:36913968 original size:15 final size:15
Alignment explanation
Indices: 36913931--36913971 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
36913921 GGCATATCAT
36913931 ATAGGCA-AAATAGC
1 ATAGGCACAAATAGC
*
36913945 ATAGACACAAATAAGC
1 ATAGGCACAAAT-AGC
36913961 -TAGGCACAAAT
1 ATAGGCACAAAT
36913972 CAAAACAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 6 0.26
15 14 0.61
16 3 0.13
ACGTcount: A:0.51, C:0.17, G:0.17, T:0.15
Consensus pattern (15 bp):
ATAGGCACAAATAGC
Found at i:36914359 original size:73 final size:73
Alignment explanation
Indices: 36914240--36914386 Score: 251
Period size: 73 Copynumber: 2.0 Consensus size: 73
36914230 TTATATCATG
36914240 AGCAAAGTTTCCTTTCCTAAATACACCACCACACAAGGTTAGTAGGTGTATAGATAAACATATAA
1 AGCAAAGTTTCCTTTCCTAAATACACCACCACACAAGGTTAGTAGGTGTATAGATAAACATATAA
36914305 ATCCAACC
66 ATCCAACC
* * *
36914313 AGCAAAGTTTCCTTTCCTAAATACACCACCATC-CAAGGTTAGTAGGTGTATAGGTAAGCATCTA
1 AGCAAAGTTTCCTTTCCTAAATACACCACCA-CACAAGGTTAGTAGGTGTATAGATAAACATATA
36914377 AATCCAACC
65 AATCCAACC
36914386 A
1 A
36914387 ATTTGTGAAA
Statistics
Matches: 70, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
73 69 0.99
74 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.14, T:0.25
Consensus pattern (73 bp):
AGCAAAGTTTCCTTTCCTAAATACACCACCACACAAGGTTAGTAGGTGTATAGATAAACATATAA
ATCCAACC
Found at i:36915499 original size:20 final size:20
Alignment explanation
Indices: 36915461--36915500 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
36915451 AAAATACTTT
*
36915461 TATTTAACTACTAACATTAA
1 TATTTAACAACTAACATTAA
36915481 TATTCTAACAACTAA-ATTAA
1 TATT-TAACAACTAACATTAA
36915501 CAAAAAAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.47, C:0.15, G:0.00, T:0.38
Consensus pattern (20 bp):
TATTTAACAACTAACATTAA
Found at i:36924248 original size:11 final size:11
Alignment explanation
Indices: 36924232--36924256 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36924222 AATCCCGTAG
36924232 ATAATAAAATA
1 ATAATAAAATA
36924243 ATAATAAAATA
1 ATAATAAAATA
36924254 ATA
1 ATA
36924257 GTTTACTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (11 bp):
ATAATAAAATA
Found at i:36924429 original size:18 final size:19
Alignment explanation
Indices: 36924395--36924432 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
36924385 AAATCTTGTT
36924395 ATTAAACTTGGTGATGTGA
1 ATTAAACTTGGTGATGTGA
36924414 ATTAAA-TTGGAT-ATGTGA
1 ATTAAACTTGG-TGATGTGA
36924432 A
1 A
36924433 CACTTAACGT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.37, C:0.03, G:0.24, T:0.37
Consensus pattern (19 bp):
ATTAAACTTGGTGATGTGA
Found at i:36928701 original size:15 final size:15
Alignment explanation
Indices: 36928681--36928719 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
36928671 ATATATATTT
36928681 TTAATTAAAAATTAA
1 TTAATTAAAAATTAA
* * *
36928696 TTAATTATAGATTAT
1 TTAATTAAAAATTAA
36928711 TTAATTAAA
1 TTAATTAAA
36928720 TATATTTAAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (15 bp):
TTAATTAAAAATTAA
Found at i:36932660 original size:18 final size:18
Alignment explanation
Indices: 36932637--36932673 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
36932627 ATTGAGTAAG
36932637 AAAAGTGATTAATTTTAT
1 AAAAGTGATTAATTTTAT
36932655 AAAAGTGATTAATTTTAT
1 AAAAGTGATTAATTTTAT
36932673 A
1 A
36932674 TGCTCTTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (18 bp):
AAAAGTGATTAATTTTAT
Found at i:36934394 original size:3 final size:3
Alignment explanation
Indices: 36934388--36934441 Score: 58
Period size: 3 Copynumber: 18.3 Consensus size: 3
36934378 TTGAACAAAT
* *
36934388 ATA ATA AGA A-A ATA ATA ATA ATTA ATA ATA ATA ATA ATA AGA A-A
1 ATA ATA ATA ATA ATA ATA ATA A-TA ATA ATA ATA ATA ATA ATA ATA
*
36934432 ATA CTA ATA A
1 ATA ATA ATA A
36934442 CAGAACCTAG
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
2 4 0.09
3 37 0.84
4 3 0.07
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.28
Consensus pattern (3 bp):
ATA
Found at i:36934759 original size:3 final size:3
Alignment explanation
Indices: 36934751--36934841 Score: 71
Period size: 3 Copynumber: 29.0 Consensus size: 3
36934741 GCATTAATGG
* *
36934751 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA -AA TGAC TAA AAA TAAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T-AA TAA TAA T-AA
*
36934797 TAGCA TAA AAA TAA -AA TAA TAA -AA TAA TAAA TAAA TAAA TAA TAA
1 TA--A TAA TAA TAA TAA TAA TAA TAA TAA T-AA T-AA T-AA TAA TAA
36934842 GGAAGGGCAA
Statistics
Matches: 74, Mismatches: 6, Indels: 16
0.77 0.06 0.17
Matches are distributed among these distances:
2 6 0.08
3 49 0.66
4 16 0.22
5 3 0.04
ACGTcount: A:0.69, C:0.02, G:0.02, T:0.26
Consensus pattern (3 bp):
TAA
Found at i:36943505 original size:25 final size:27
Alignment explanation
Indices: 36943468--36943517 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
36943458 TGCATTTCCC
*
36943468 CTAATGCAAAAGAAA-ATTAAAAACTA
1 CTAATGCAAAAGAAAGAATAAAAACTA
36943494 CTAATG-AAAAGAAAGAATAAAAAC
1 CTAATGCAAAAGAAAGAATAAAAAC
36943518 GTAAAAGATA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.64, C:0.10, G:0.10, T:0.16
Consensus pattern (27 bp):
CTAATGCAAAAGAAAGAATAAAAACTA
Found at i:36958010 original size:27 final size:27
Alignment explanation
Indices: 36957970--36958043 Score: 94
Period size: 27 Copynumber: 2.7 Consensus size: 27
36957960 AACACGTCAA
*
36957970 GAAAGAAAATCCTTTATGGCGTAATAT
1 GAAAGAAAAGCCTTTATGGCGTAATAT
* *
36957997 GAAAGAAAAGCCTTTTTGGCGTGATAT
1 GAAAGAAAAGCCTTTATGGCGTAATAT
** *
36958024 GAAAGATTAGCCTTTGTGGC
1 GAAAGAAAAGCCTTTATGGC
36958044 AAACTTTGAA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (27 bp):
GAAAGAAAAGCCTTTATGGCGTAATAT
Found at i:36961232 original size:16 final size:16
Alignment explanation
Indices: 36961211--36961241 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
36961201 GGTACGAGTA
36961211 TATATATATGTATATG
1 TATATATATGTATATG
36961227 TATATATATGTATAT
1 TATATATATGTATAT
36961242 AACGCTCGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.10, T:0.52
Consensus pattern (16 bp):
TATATATATGTATATG
Found at i:36961234 original size:10 final size:10
Alignment explanation
Indices: 36961209--36961242 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
36961199 AAGGTACGAG
*
36961209 TATATATATA
1 TATATATGTA
*
36961219 TGTATATGTA
1 TATATATGTA
36961229 TATATATGTA
1 TATATATGTA
36961239 TATA
1 TATA
36961243 ACGCTCGAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.09, T:0.50
Consensus pattern (10 bp):
TATATATGTA
Found at i:36961419 original size:44 final size:44
Alignment explanation
Indices: 36961352--36961439 Score: 122
Period size: 44 Copynumber: 2.0 Consensus size: 44
36961342 AAGGCCCAAT
* *
36961352 CGGCCCAAAACAGTTCCTAGTCCAACATTACAAAATTAAACAGA
1 CGGCCCAAAACAGTCCCTAGTCCAACACTACAAAATTAAACAGA
* * * *
36961396 CGGCCCAAAACGGTCCCTGGTCCAACACTACAAAGTTAACCAGA
1 CGGCCCAAAACAGTCCCTAGTCCAACACTACAAAATTAAACAGA
36961440 AAAAACCCTA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.39, C:0.31, G:0.15, T:0.16
Consensus pattern (44 bp):
CGGCCCAAAACAGTCCCTAGTCCAACACTACAAAATTAAACAGA
Found at i:36962606 original size:22 final size:22
Alignment explanation
Indices: 36962580--36962621 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
36962570 TTTATTTTCA
36962580 TATTTT-TTTAATATATTATACT
1 TATTTTATTT-ATATATTATACT
*
36962602 TATTTTATTTATATTTTATA
1 TATTTTATTTATATATTATA
36962622 AAGTACATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TATTTTATTTATATATTATACT
Found at i:36974597 original size:44 final size:44
Alignment explanation
Indices: 36974405--36974604 Score: 175
Period size: 45 Copynumber: 4.5 Consensus size: 44
36974395 GAGCAGTTCG
* *
36974405 AAAGATAACAGATCCTGTCTTCATGTACTGGCGTGAAGTAGATC
1 AAAGATACCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATC
* * ** * *
36974449 ATAGATACCAGATCTTGTCTCCCCGTACAGGCGGTGGAGTAGATC
1 AAAGATACCAGATCTTGTCTTCATGTACTGGC-GTGAAGTAGATC
* * * * *** * * * *
36974494 GAAGAAAGCAGATCTTGTATTCCCATACTGGTGGCGGAGCAGATC
1 AAAGATACCAGATCTTGTCTTCATGTACTGG-CGTGAAGTAGATC
* * *
36974539 AAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATC
1 AAAGATACCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATC
*
36974583 AAAGATACCAGATCTTGCCTTC
1 AAAGATACCAGATCTTGTCTTC
36974605 CCACACTGGT
Statistics
Matches: 122, Mismatches: 32, Indels: 4
0.77 0.20 0.03
Matches are distributed among these distances:
44 53 0.43
45 69 0.57
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.26
Consensus pattern (44 bp):
AAAGATACCAGATCTTGTCTTCATGTACTGGCGTGAAGTAGATC
Found at i:36974963 original size:44 final size:45
Alignment explanation
Indices: 36974900--36974997 Score: 144
Period size: 44 Copynumber: 2.2 Consensus size: 45
36974890 CAGTAGAATC
** *
36974900 GATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTA
1 GATCGAAGAAAGCAGATCTTGTCTTCACATACTGGTCGTGAAGTA
* *
36974944 GATCGAAGAAAGCAGATCTTGTCTTCCCATACTGGTGGTGAAGTA
1 GATCGAAGAAAGCAGATCTTGTCTTCACATACTGGTCGTGAAGTA
36974989 GATCGAAGA
1 GATCGAAGA
36974998 TACAAGTCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
44 31 0.65
45 17 0.35
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.27
Consensus pattern (45 bp):
GATCGAAGAAAGCAGATCTTGTCTTCACATACTGGTCGTGAAGTA
Found at i:36976032 original size:7 final size:7
Alignment explanation
Indices: 36976017--36976049 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
36976007 ACCTGTTGAG
36976017 TTTTT-T
1 TTTTTAT
36976023 TTTTTATT
1 TTTTTA-T
36976031 TTTTTAT
1 TTTTTAT
36976038 TTTTTAT
1 TTTTTAT
36976045 TTTTT
1 TTTTT
36976050 TTCTCATTCG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 5 0.20
7 13 0.52
8 7 0.28
ACGTcount: A:0.09, C:0.00, G:0.00, T:0.91
Consensus pattern (7 bp):
TTTTTAT
Found at i:36976034 original size:8 final size:8
Alignment explanation
Indices: 36976017--36976050 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
36976007 ACCTGTTGAG
36976017 TTTT-TTT
1 TTTTATTT
36976024 TTTTATTT
1 TTTTATTT
36976032 TTTTA-TT
1 TTTTATTT
36976039 TTTTATTT
1 TTTTATTT
36976047 TTTT
1 TTTT
36976051 TCTCATTCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
7 11 0.44
8 14 0.56
ACGTcount: A:0.09, C:0.00, G:0.00, T:0.91
Consensus pattern (8 bp):
TTTTATTT
Found at i:36976040 original size:15 final size:14
Alignment explanation
Indices: 36976017--36976051 Score: 61
Period size: 15 Copynumber: 2.4 Consensus size: 14
36976007 ACCTGTTGAG
36976017 TTTTTTTTTTTATT
1 TTTTTTTTTTTATT
36976031 TTTTTATTTTTTATT
1 TTTTT-TTTTTTATT
36976046 TTTTTT
1 TTTTTT
36976052 CTCATTCGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 6 0.30
15 14 0.70
ACGTcount: A:0.09, C:0.00, G:0.00, T:0.91
Consensus pattern (14 bp):
TTTTTTTTTTTATT
Found at i:36976657 original size:22 final size:22
Alignment explanation
Indices: 36976631--36976672 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
36976621 TTTATTTTCA
36976631 TATTTT-TTTAATATATTATACT
1 TATTTTATTT-ATATATTATACT
*
36976653 TATTTTATTTATATTTTATA
1 TATTTTATTTATATATTATA
36976673 AAGTACATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 15 0.83
23 3 0.17
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (22 bp):
TATTTTATTTATATATTATACT
Found at i:36976874 original size:93 final size:93
Alignment explanation
Indices: 36976705--36976875 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
36976695 ATTATTCTCC
*
36976705 TTTCATAATTTTTGCATACATGTATACATATACATTAACGCTTTCGATACATATATAAATTATTT
1 TTTCATAATTTTTGCATACATGTATACATATACATTAACGCTTTCGATACATATATAAATTATTA
** * *
36976770 TTTATATTTTATAACTCAAAAAAATTCT
66 CATACAATTTATAACTCAAAAAAATTCT
36976798 TTTCATAATTTTTGCATACATGTATACATATACATTAACGCTTTTCGATACATATATAAA-TA-T
1 TTTCATAATTTTTGCATACATGTATACATATACATTAACGC-TTTCGATACATATATAAATTATT
36976861 ACATACACATTTATA
65 ACATACA-ATTTATA
36976876 TTTATAACTC
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
92 4 0.06
93 49 0.69
94 18 0.25
ACGTcount: A:0.38, C:0.14, G:0.05, T:0.43
Consensus pattern (93 bp):
TTTCATAATTTTTGCATACATGTATACATATACATTAACGCTTTCGATACATATATAAATTATTA
CATACAATTTATAACTCAAAAAAATTCT
Found at i:36978012 original size:75 final size:75
Alignment explanation
Indices: 36977873--36978013 Score: 169
Period size: 75 Copynumber: 1.9 Consensus size: 75
36977863 GCTTACATAT
* * * * * * *
36977873 ATGTATATGTTCTTTTATTGAATTTAGGAATGACATTTATATAAGTTTTTATGAGATACTATTAT
1 ATGTATATGTTCTTGTAATGAATTTAAGAATGAAATTTATATAAGTGTATATGAGATACGATTAT
36977938 GCCGGTATAC
66 GCCGGTATAC
* *
36977948 ATGTATATGTTCTTGTAATGAATTTAAGTATGAAATTTATAT-A-TGTATATGGAAGATTCGATT
1 ATGTATATGTTCTTGTAATGAATTTAAGAATGAAATTTATATAAGTGTATAT-G-AGATACGATT
36978011 ATG
64 ATG
36978014 TATATATATT
Statistics
Matches: 55, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
73 5 0.09
74 2 0.04
75 48 0.87
ACGTcount: A:0.33, C:0.06, G:0.17, T:0.45
Consensus pattern (75 bp):
ATGTATATGTTCTTGTAATGAATTTAAGAATGAAATTTATATAAGTGTATATGAGATACGATTAT
GCCGGTATAC
Found at i:36978194 original size:41 final size:41
Alignment explanation
Indices: 36978108--36978201 Score: 98
Period size: 41 Copynumber: 2.3 Consensus size: 41
36978098 TAGACTTTAT
** * * * * *
36978108 GTCTAGCAGATTTGATGCCGGTGAAATATTTCAAACTTTAT
1 GTCTAGCAGGCTTAATGCCGGTGAAACAATTCAAACTATAA
* **
36978149 GTCTAGTAGGCTTAATGCCGGTGAAACAATTCGGACTATAA
1 GTCTAGCAGGCTTAATGCCGGTGAAACAATTCAAACTATAA
36978190 GTCTAGCAGGCT
1 GTCTAGCAGGCT
36978202 GAAAGTCGGT
Statistics
Matches: 42, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (41 bp):
GTCTAGCAGGCTTAATGCCGGTGAAACAATTCAAACTATAA
Found at i:36978415 original size:69 final size:72
Alignment explanation
Indices: 36978326--36978480 Score: 194
Period size: 69 Copynumber: 2.2 Consensus size: 72
36978316 TTGAAGAACA
* * **
36978326 TGTATATACATT-TAGTGATAATACTTGTTAGGC-ATATGTATATATGCATTC-AGCTATTCATG
1 TGTATATACATTCGAGTGATAATACTTGTTAAGCAATATGTATATACACATTCGA-CTATTCATG
36978388 -TTTAAAG
65 TTTTAAAG
*
36978395 TGTATATACATTCGA-TGATAATATTTGTTAAGCATATATGTATATACACATTCGACTATTCATG
1 TGTATATACATTCGAGTGATAATACTTGTTAAGCA-ATATGTATATACACATTCGACTATTCATG
*
36978459 TTTTAAAT
65 TTTTAAAG
*
36978467 TGTATATGCATTCG
1 TGTATATACATTCG
36978481 GTTTTAAGTG
Statistics
Matches: 74, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
69 28 0.38
70 1 0.01
71 25 0.34
72 20 0.27
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (72 bp):
TGTATATACATTCGAGTGATAATACTTGTTAAGCAATATGTATATACACATTCGACTATTCATGT
TTTAAAG
Found at i:36979943 original size:12 final size:12
Alignment explanation
Indices: 36979926--36979950 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36979916 GGTGTTCATT
36979926 CGGTTAACCGAC
1 CGGTTAACCGAC
36979938 CGGTTAACCGAC
1 CGGTTAACCGAC
36979950 C
1 C
36979951 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Done.