Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 120 of 173
Found at i:36980123 original size:9 final size:9
Alignment explanation
Indices: 36980109--36980184 Score: 84
Period size: 9 Copynumber: 8.4 Consensus size: 9
36980099 TTTGGTTAAA
36980109 AATTACCCG
1 AATTACCCG
*
36980118 AATTACCTG
1 AATTACCCG
36980127 AATTACCCG
1 AATTACCCG
*
36980136 AATTAACCG
1 AATTACCCG
*
36980145 AATTAACCG
1 AATTACCCG
36980154 AATTA-CCG
1 AATTACCCG
*
36980162 AAAAATACCCG
1 --AATTACCCG
36980173 AATTACCC-
1 AATTACCCG
36980181 AATT
1 AATT
36980185 TTTTTTTTAA
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
8 7 0.12
9 45 0.76
10 4 0.07
11 3 0.05
ACGTcount: A:0.41, C:0.26, G:0.09, T:0.24
Consensus pattern (9 bp):
AATTACCCG
Found at i:36988601 original size:18 final size:18
Alignment explanation
Indices: 36988572--36988653 Score: 76
Period size: 19 Copynumber: 4.3 Consensus size: 18
36988562 TTTAGAATTT
36988572 TTTTTTGAAATTTTTATAA
1 TTTTTTG-AATTTTTATAA
36988591 TTTTTTGAATTTTTATAAA
1 TTTTTTGAATTTTTAT-AA
* *
36988610 TATTTTG-ATTTTTAAAAA
1 TTTTTTGAATTTTT-ATAA
*
36988628 TTATTTTGAACTATTTTGTAA
1 TT-TTTTGAA-T-TTTTATAA
36988649 TTTTT
1 TTTTT
36988654 GTTAGGAGAA
Statistics
Matches: 52, Mismatches: 5, Indels: 11
0.76 0.07 0.16
Matches are distributed among these distances:
18 18 0.35
19 21 0.40
20 4 0.08
21 5 0.10
22 4 0.08
ACGTcount: A:0.30, C:0.01, G:0.06, T:0.62
Consensus pattern (18 bp):
TTTTTTGAATTTTTATAA
Found at i:36992273 original size:19 final size:19
Alignment explanation
Indices: 36992223--36992271 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
36992213 TTTCTCAATT
* * *
36992223 TAAGTATGTTAAAGTAAAA
1 TAAGTTTGTTTAATTAAAA
*
36992242 TAATTTTGTTTAATTAAAA
1 TAAGTTTGTTTAATTAAAA
36992261 TATAGTTTGTT
1 TA-AGTTTGTT
36992272 AACCTATAAT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.41, C:0.00, G:0.12, T:0.47
Consensus pattern (19 bp):
TAAGTTTGTTTAATTAAAA
Found at i:37002788 original size:20 final size:20
Alignment explanation
Indices: 37002763--37002806 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
37002753 AAATTGTATT
*
37002763 AAAATTTATT-TAAAATATA
1 AAAATTTATTAGAAAATATA
37002782 GAAAA-TTATTAGAAAATATA
1 -AAAATTTATTAGAAAATATA
37002802 AAAAT
1 AAAAT
37002807 ATAAAATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (20 bp):
AAAATTTATTAGAAAATATA
Found at i:37002907 original size:10 final size:10
Alignment explanation
Indices: 37002894--37002945 Score: 52
Period size: 10 Copynumber: 5.3 Consensus size: 10
37002884 TAAAATCAAT
37002894 AAAAATATAA
1 AAAAATATAA
37002904 AAAAATATAA
1 AAAAATATAA
** *
37002914 AATTAT-TAC
1 AAAAATATAA
**
37002923 AAATTTATAA
1 AAAAATATAA
37002933 AAAAATATAA
1 AAAAATATAA
37002943 AAA
1 AAA
37002946 TAGAGAAAAA
Statistics
Matches: 33, Mismatches: 8, Indels: 2
0.77 0.19 0.05
Matches are distributed among these distances:
9 6 0.18
10 27 0.82
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.27
Consensus pattern (10 bp):
AAAAATATAA
Found at i:37002917 original size:37 final size:37
Alignment explanation
Indices: 37002875--37002947 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 37
37002865 GATAAAGATA
*
37002875 AAAATTGATTA-AAATCAATAAAAATATAAAAAAATAT
1 AAAATT-ATTACAAATCAATAAAAAAATAAAAAAATAT
** *
37002912 AAAATTATTACAAATTTATAAAAAAATATAAAAATA
1 AAAATTATTACAAATCAATAAAAAAATAAAAAAATA
37002948 GAGAAAAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 4 0.13
37 27 0.87
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.29
Consensus pattern (37 bp):
AAAATTATTACAAATCAATAAAAAAATAAAAAAATAT
Found at i:37002971 original size:17 final size:17
Alignment explanation
Indices: 37002932--37002964 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
37002922 CAAATTTATA
37002932 AAAAAATATAAAAATAG
1 AAAAAATATAAAAATAG
37002949 AGAAAAA-ATAAAAATA
1 A-AAAAATATAAAAATA
37002965 TTAAAAATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.79, C:0.00, G:0.06, T:0.15
Consensus pattern (17 bp):
AAAAAATATAAAAATAG
Found at i:37002982 original size:46 final size:47
Alignment explanation
Indices: 37002892--37002992 Score: 125
Period size: 46 Copynumber: 2.1 Consensus size: 47
37002882 ATTAAAATCA
* * *
37002892 ATAAAAATATAAAAAAATATAAAATTATTACAAATTTATAAAAAAAT
1 ATAAAAATAGAAAAAAATATAAAATTATTAAAAATTCATAAAAAAAT
* *
37002939 ATAAAAATAGAGAAAAAATA-AAAA-TATTAAAAATTCATGAAAAACT
1 ATAAAAATAGA-AAAAAATATAAAATTATTAAAAATTCATAAAAAAAT
37002985 ATAGAAAA
1 ATA-AAAA
37002993 ATTAGTTACT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
46 21 0.45
47 18 0.38
48 8 0.17
ACGTcount: A:0.68, C:0.03, G:0.04, T:0.25
Consensus pattern (47 bp):
ATAAAAATAGAAAAAAATATAAAATTATTAAAAATTCATAAAAAAAT
Found at i:37005945 original size:43 final size:43
Alignment explanation
Indices: 37005855--37005945 Score: 112
Period size: 43 Copynumber: 2.1 Consensus size: 43
37005845 TACAGCATGT
* *
37005855 TATGCGAACCATGTTATAATTTCATGCGAACCTTGCAGTGTGT
1 TATGCGAACCATGTTATAATTTCATGCGAACCTTGCAGTATGA
* * * *
37005898 TATGCGAACCATGTTATATTTTCATGTG-AGCTCTGTAGTATGA
1 TATGCGAACCATGTTATAATTTCATGCGAACCT-TGCAGTATGA
37005941 TATGC
1 TATGC
37005946 AAACTTGCTA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 3 0.07
43 38 0.93
ACGTcount: A:0.25, C:0.16, G:0.21, T:0.37
Consensus pattern (43 bp):
TATGCGAACCATGTTATAATTTCATGCGAACCTTGCAGTATGA
Found at i:37006211 original size:25 final size:25
Alignment explanation
Indices: 37006157--37006230 Score: 78
Period size: 25 Copynumber: 2.9 Consensus size: 25
37006147 AATGCTGTGC
* * *
37006157 GAACATACTATGTTGAATGGTATCTA
1 GAACATGCTATGTTGAATGATAT-AA
*
37006183 -AACATGTTATGTTGAATGATATAA
1 GAACATGCTATGTTGAATGATATAA
*
37006207 GAACATGCTATGATTGAGTGATAT
1 GAACATGCTATG-TTGAATGATAT
37006231 GCGAACCCTT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
24 1 0.03
25 29 0.73
26 10 0.25
ACGTcount: A:0.36, C:0.08, G:0.20, T:0.35
Consensus pattern (25 bp):
GAACATGCTATGTTGAATGATATAA
Found at i:37010817 original size:22 final size:22
Alignment explanation
Indices: 37010804--37010933 Score: 116
Period size: 22 Copynumber: 5.8 Consensus size: 22
37010794 GCAAACCCAT
* *
37010804 GCTATGTGATATGCAAACTTAA
1 GCTATGTGATATGCGAACCTAA
* * *
37010826 GCTATATGATATGCGAACTTAT
1 GCTATGTGATATGCGAACCTAA
* * *
37010848 GCTAAAGTGACATGCCAACCTAA
1 GCT-ATGTGATATGCGAACCTAA
* * * * *
37010871 GCTATATAATATGTGAACTTAT
1 GCTATGTGATATGCGAACCTAA
*
37010893 GCTAAAGTGATATGCGAACCTAA
1 GCT-ATGTGATATGCGAACCTAA
37010916 GCTATGTGATATGCGAAC
1 GCTATGTGATATGCGAAC
37010934 TATGACTTAT
Statistics
Matches: 82, Mismatches: 24, Indels: 4
0.75 0.22 0.04
Matches are distributed among these distances:
22 50 0.61
23 32 0.39
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (22 bp):
GCTATGTGATATGCGAACCTAA
Found at i:37010873 original size:45 final size:45
Alignment explanation
Indices: 37010809--37010934 Score: 189
Period size: 45 Copynumber: 2.8 Consensus size: 45
37010799 CCCATGCTAT
*
37010809 GTGATATGCAAACTTAAGCTATATGATATGCGAACTTATGCTAAA
1 GTGATATGCAAACCTAAGCTATATGATATGCGAACTTATGCTAAA
* * * *
37010854 GTGACATGCCAACCTAAGCTATATAATATGTGAACTTATGCTAAA
1 GTGATATGCAAACCTAAGCTATATGATATGCGAACTTATGCTAAA
* *
37010899 GTGATATGCGAACCTAAGCTATGTGATATGCGAACT
1 GTGATATGCAAACCTAAGCTATATGATATGCGAACT
37010935 ATGACTTATG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 71 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (45 bp):
GTGATATGCAAACCTAAGCTATATGATATGCGAACTTATGCTAAA
Found at i:37010875 original size:67 final size:68
Alignment explanation
Indices: 37010764--37010911 Score: 163
Period size: 67 Copynumber: 2.2 Consensus size: 68
37010754 TTATTGCAAT
* * * *
37010764 GTGATATGCGAACTTAAATTAAAATAACATGCAAACCCATGCTATGTGATATGCAAACTTAAGCT
1 GTGATATGCGAACTTAAACTAAAATAACATGCAAACCCAAGCTATATAATATGCAAACTTAAGCT
*
37010829 ATA
66 AAA
** * * * * ** *
37010832 -TGATATGCGAACTTATGCTAAAGTGACATGCCAACCTAAGCTATATAATATGTGAACTTATGCT
1 GTGATATGCGAACTTAAACTAAAATAACATGCAAACCCAAGCTATATAATATGCAAACTTAAGCT
37010896 AAA
66 AAA
37010899 GTGATATGCGAAC
1 GTGATATGCGAAC
37010912 CTAAGCTATG
Statistics
Matches: 65, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
67 53 0.82
68 12 0.18
ACGTcount: A:0.39, C:0.16, G:0.17, T:0.28
Consensus pattern (68 bp):
GTGATATGCGAACTTAAACTAAAATAACATGCAAACCCAAGCTATATAATATGCAAACTTAAGCT
AAA
Found at i:37011534 original size:17 final size:17
Alignment explanation
Indices: 37011514--37011577 Score: 58
Period size: 17 Copynumber: 3.8 Consensus size: 17
37011504 AGAACTTTTA
* *
37011514 TTTGGTATGAATTGTTG
1 TTTGATATGAACTGTTG
37011531 TTTGATATGAACTGTTG
1 TTTGATATGAACTGTTG
* *
37011548 TTT-ATTGTGAACTGATG
1 TTTGA-TATGAACTGTTG
* *
37011565 TTTTATGTGAACT
1 TTTGATATGAACT
37011578 ACCTATTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
16 1 0.02
17 39 0.95
18 1 0.02
ACGTcount: A:0.22, C:0.05, G:0.23, T:0.50
Consensus pattern (17 bp):
TTTGATATGAACTGTTG
Found at i:37011586 original size:18 final size:18
Alignment explanation
Indices: 37011565--37011631 Score: 71
Period size: 18 Copynumber: 3.7 Consensus size: 18
37011555 TGAACTGATG
*
37011565 TTTTATGTGAACTACCTA
1 TTTTATGTGAACTACTTA
* *
37011583 TTTTATGTGAATTGCTTA
1 TTTTATGTGAACTACTTA
* * *
37011601 CTCTATGTGAACTATTTA
1 TTTTATGTGAACTACTTA
*
37011619 TTTTATGGGAACT
1 TTTTATGTGAACT
37011632 GTAAGTCGTG
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.25, C:0.12, G:0.15, T:0.48
Consensus pattern (18 bp):
TTTTATGTGAACTACTTA
Found at i:37016040 original size:20 final size:20
Alignment explanation
Indices: 37016017--37016119 Score: 68
Period size: 20 Copynumber: 5.2 Consensus size: 20
37016007 AAAATACAAA
37016017 CAGGGGCACGTATGTGCATT
1 CAGGGGCACGTATGTGCATT
* * * *
37016037 CAGGGGTACCG-AAGTACAAAT
1 CAGGGGCA-CGTATGTGC-ATT
*
37016058 -AGGGGCACATATGTGCATT
1 CAGGGGCACGTATGTGCATT
* * * **
37016077 CAGGGGTACCG-AAGTACAAA
1 CAGGGGCA-CGTATGTGCATT
37016097 CAGGGGCACGTATGTGCATT
1 CAGGGGCACGTATGTGCATT
37016117 CAG
1 CAG
37016120 TAATATTTTA
Statistics
Matches: 57, Mismatches: 20, Indels: 12
0.64 0.22 0.13
Matches are distributed among these distances:
19 5 0.09
20 47 0.82
21 5 0.09
ACGTcount: A:0.29, C:0.19, G:0.32, T:0.19
Consensus pattern (20 bp):
CAGGGGCACGTATGTGCATT
Found at i:37016043 original size:40 final size:40
Alignment explanation
Indices: 37015988--37016119 Score: 219
Period size: 40 Copynumber: 3.3 Consensus size: 40
37015978 CAGAGCATGA
* * *
37015988 ATGTGCATTCAGGGGTATCAAAATACAAACAGGGGCACGT
1 ATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACGT
* *
37016028 ATGTGCATTCAGGGGTACCGAAGTACAAATAGGGGCACAT
1 ATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACGT
37016068 ATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACGT
1 ATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACGT
37016108 ATGTGCATTCAG
1 ATGTGCATTCAG
37016120 TAATATTTTA
Statistics
Matches: 85, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 85 1.00
ACGTcount: A:0.32, C:0.18, G:0.30, T:0.20
Consensus pattern (40 bp):
ATGTGCATTCAGGGGTACCGAAGTACAAACAGGGGCACGT
Found at i:37020161 original size:21 final size:21
Alignment explanation
Indices: 37020135--37020178 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
37020125 TTACTAATTC
37020135 TAAAAAT-TCTAAAATATA-TTT
1 TAAAAATCT-TAAAA-ATACTTT
37020156 TAAAAATCTTAAAAATACTTT
1 TAAAAATCTTAAAAATACTTT
37020177 TA
1 TA
37020179 TGTTAACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 3 0.14
21 17 0.81
22 1 0.05
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (21 bp):
TAAAAATCTTAAAAATACTTT
Found at i:37021056 original size:5 final size:5
Alignment explanation
Indices: 37021041--37021071 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
37021031 ATATTTATCT
37021041 TTTAA -TTAA TTTAA TTTAA TTTAA TTTAA TT
1 TTTAA TTTAA TTTAA TTTAA TTTAA TTTAA TT
37021072 AGAGAAAAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.16
5 21 0.84
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
TTTAA
Found at i:37021740 original size:13 final size:11
Alignment explanation
Indices: 37021712--37021743 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
37021702 TCTTTCAATA
37021712 TTCTCTCAAAT
1 TTCTCTCAAAT
37021723 TTCTCTCAAAT
1 TTCTCTCAAAT
*
37021734 TCCTCTCAAA
1 TTCTCTCAAA
37021744 GCTCTCTTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.28, C:0.31, G:0.00, T:0.41
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:37021749 original size:22 final size:22
Alignment explanation
Indices: 37021706--37021750 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
37021696 CTTCAATCTT
**
37021706 TCAATATTCTCTCAAATTTCTC
1 TCAATATTCTCTCAAAGCTCTC
37021728 TCAA-ATTCCTCTCAAAGCTCTC
1 TCAATATT-CTCTCAAAGCTCTC
37021750 T
1 T
37021751 TTAATATTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 3 0.15
22 17 0.85
ACGTcount: A:0.27, C:0.31, G:0.02, T:0.40
Consensus pattern (22 bp):
TCAATATTCTCTCAAAGCTCTC
Found at i:37023840 original size:21 final size:21
Alignment explanation
Indices: 37023816--37023858 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
37023806 ATTCCCTACT
* * *
37023816 GGAGGAACCAGAATCCCGGCC
1 GGAGCAACCACAACCCCGGCC
37023837 GGAGCAACCACAACCCCGGCC
1 GGAGCAACCACAACCCCGGCC
37023858 G
1 G
37023859 AAAGCTGGAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.40, G:0.30, T:0.02
Consensus pattern (21 bp):
GGAGCAACCACAACCCCGGCC
Found at i:37024810 original size:31 final size:32
Alignment explanation
Indices: 37024754--37024815 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
37024744 AAATTACAAG
37024754 AGTAATTGAATCCTAATAAAAACTCTTTAAAT
1 AGTAATTGAATCCTAATAAAAACTCTTTAAAT
*
37024786 AGTAATTGAATCTTAAT-AAAACTCTTTAAA
1 AGTAATTGAATCCTAATAAAAACTCTTTAAA
37024816 ATTATCTAAG
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 13 0.45
32 16 0.55
ACGTcount: A:0.47, C:0.11, G:0.06, T:0.35
Consensus pattern (32 bp):
AGTAATTGAATCCTAATAAAAACTCTTTAAAT
Found at i:37032042 original size:126 final size:125
Alignment explanation
Indices: 37031817--37032100 Score: 406
Period size: 126 Copynumber: 2.3 Consensus size: 125
37031807 GCCAAATAGG
* * * * * *
37031817 AACTACTGTAACAAAAGAGCGTCCACGTGGGAGATTCTTTTAGTACTTTTGCTGATATTGAATCC
1 AACTACTATAGCAAAAGAGCATCCACGTGGGAGATTCTTTCAGTACTTTTGCTGACAATGAATCC
* * *
37031882 TGCTTGAAGCGTTTTTGACACTATTTGCTCAGAAACATCTTTTCAAAATTATTTTTTCAGA
66 TGCTTAAAGCATTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTT-AGA
* * *
37031943 AACTACTATAGCAAAAGAGCATTCACGTGGGAGTTTCTTTCAGTACTTTTGCTGACAATGCATCC
1 AACTACTATAGCAAAAGAGCATCCACGTGGGAGATTCTTTCAGTACTTTTGCTGACAATGAATCC
** *
37032008 TGCTTAAAGCATTTTTGACACTATTTGCTCAGAAATGTCTTCTCAAAATTATTTTTTAGG
66 TGCTTAAAGCATTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTAGA
* *
37032068 AACTACTATAGCAAAAGAGCGTCCACGTAGGAG
1 AACTACTATAGCAAAAGAGCATCCACGTGGGAG
37032101 CTTTTTTAAA
Statistics
Matches: 140, Mismatches: 18, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
125 32 0.23
126 108 0.77
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35
Consensus pattern (125 bp):
AACTACTATAGCAAAAGAGCATCCACGTGGGAGATTCTTTCAGTACTTTTGCTGACAATGAATCC
TGCTTAAAGCATTTTTGACACTATTTGCTCAGAAACATCTTCTCAAAATTATTTTTTAGA
Found at i:37032333 original size:91 final size:90
Alignment explanation
Indices: 37032146--37032607 Score: 469
Period size: 91 Copynumber: 4.9 Consensus size: 90
37032136 CTTAAACCCC
* * * * *
37032146 AAACCCTAATTTGTTTAATTTTTCCTTAAAAACCTTAAACCCTAAACCCTAATTTATTTAAAAAA
1 AAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTAAACCCT-AA-TCTAATTT-TTTAAAAAA
* *
37032211 ATTATAATTAATTTACTCAAGTAATCAT
63 ATTATAATTAATTTACTCAAGTAACCTT
37032239 AAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTAAACCCTAATCTAATTTTTTAAAAAAAAT
1 AAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTAAACCCTAATCTAATTTTTT-AAAAAAAT
*
37032304 TATAATTAATTTACTCAAGTAATCTT
65 TATAATTAATTTACTCAAGTAACCTT
*
37032330 AAACCCTAGTTTATTTGATTTTTTTTCTTAAAAACCCTAAACACTAAACCATAATCTAATTTTTT
1 AAACCCTAATTTATTTGA--TTTTTTCTTAAAAACCCT-AA-AC----CC-TAATCTAATTTTTT
*
37032395 --AAAATTTATAATTAATTTACTCAAGTAACCTT
57 AAAAAAATTATAATTAATTTACTCAAGTAACCTT
* *
37032427 GAATCCTAATTTATTTGATTTTTTTCCTTAAAAACCAAAACCACTAAACCCTAATCTAATTTTTT
1 AAACCCTAATTTATTTGA-TTTTTT-CTT----A--AAAACC-CTAAACCCTAATCTAATTTTTT
* * * *
37032492 TAAAAATTTATAACTAATTTACTCAAGTAACCCT
57 AAAAAAATTATAATTAATTTACTCAAGTAACCTT
* * * * *
37032526 AAACCGTAATTTATTTGATTTTTTCTTAAAAACCATAAACACCAAACCCTAATCTAATTTTTAAA
1 AAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTAAAC-CCTAA-TCTAAT-T--TTTTAAAA
*
37032591 AATTTATAATTAATTTA
61 AAATTATAATTAATTTA
37032608 ATTAAGAAAC
Statistics
Matches: 323, Mismatches: 21, Indels: 48
0.82 0.05 0.12
Matches are distributed among these distances:
90 8 0.02
91 67 0.21
92 7 0.02
93 59 0.18
94 2 0.01
95 26 0.08
96 7 0.02
97 65 0.20
98 8 0.02
99 47 0.15
100 14 0.04
101 1 0.00
102 2 0.01
103 8 0.02
104 2 0.01
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (90 bp):
AAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTAAACCCTAATCTAATTTTTTAAAAAAATT
ATAATTAATTTACTCAAGTAACCTT
Found at i:37032440 original size:97 final size:95
Alignment explanation
Indices: 37032146--37032607 Score: 548
Period size: 97 Copynumber: 4.9 Consensus size: 95
37032136 CTTAAACCCC
* * * * * * **
37032146 AAACCCTAATTTGTTTAATTTTTCCTTAAAAACCTTAAACCCTAAACCCTAAT-TTA-TTTAAAA
1 AAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAA
* * *
37032209 AAATTATAATTAATTTACTCAAGTAATCAT
66 AATTTATAATTAATTTACTCAAGTAACCTT
37032239 AAACCCTAATTTATTTGATTTTTTCTTAAAAA--C----C-CTAAACCCTAATCTAATTTTTTAA
1 AAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTT--
* *
37032297 AAAAAATTATAATTAATTTACTCAAGTAATCTT
64 -AAAATTTATAATTAATTTACTCAAGTAACCTT
* *
37032330 AAACCCTAGTTTATTTGATTTTTTTTCTTAAAAACCCTAAACACTAAACCATAATCTAATTTTTT
1 AAACCCTAATTTATTTGA--TTTTTTCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTT
37032395 AAAATTTATAATTAATTTACTCAAGTAACCTT
64 AAAATTTATAATTAATTTACTCAAGTAACCTT
* * *
37032427 GAATCCTAATTTATTTGATTTTTTTCCTTAAAAA-CCAAAACCACTAAACCCTAATCTAATTTTT
1 AAACCCTAATTTATTTGA-TTTTTT-CTTAAAAACCCTAAA-CACTAAACCCTAATCTAA-TTTT
* *
37032491 TTAAAAATTTATAACTAATTTACTCAAGTAACCCT
62 TT-AAAATTTATAATTAATTTACTCAAGTAACCTT
* * * *
37032526 AAACCGTAATTTATTTGATTTTTTCTTAAAAACCATAAACACCAAACCCTAATCTAATTTTTAAA
1 AAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAA
37032591 AATTTATAATTAATTTA
66 AATTTATAATTAATTTA
37032608 ATTAAGAAAC
Statistics
Matches: 323, Mismatches: 27, Indels: 36
0.84 0.07 0.09
Matches are distributed among these distances:
86 12 0.04
87 3 0.01
88 3 0.01
91 48 0.15
93 43 0.13
95 19 0.06
96 17 0.05
97 95 0.29
98 16 0.05
99 46 0.14
100 21 0.07
ACGTcount: A:0.40, C:0.17, G:0.03, T:0.40
Consensus pattern (95 bp):
AAACCCTAATTTATTTGATTTTTTCTTAAAAACCCTAAACACTAAACCCTAATCTAATTTTTTAA
AATTTATAATTAATTTACTCAAGTAACCTT
Found at i:37041281 original size:23 final size:22
Alignment explanation
Indices: 37041238--37041281 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 22
37041228 TTCTAAGTTG
37041238 ATATTCAATTCAATTCCACACCT
1 ATATTCAATTCAATT-CACACCT
37041261 ATATTCATTATTCAATT-ACAC
1 ATATTCA--ATTCAATTCACAC
37041282 TTAGTAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
23 11 0.58
25 8 0.42
ACGTcount: A:0.36, C:0.25, G:0.00, T:0.39
Consensus pattern (22 bp):
ATATTCAATTCAATTCACACCT
Found at i:37041392 original size:45 final size:45
Alignment explanation
Indices: 37041328--37041414 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
37041318 CAGATACTCG
* *
37041328 GTGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCCA
1 GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCA
37041373 GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
1 GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGT
37041415 TCGGTTCACA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.25
Consensus pattern (45 bp):
GTGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCA
Found at i:37041490 original size:51 final size:50
Alignment explanation
Indices: 37041435--37041598 Score: 195
Period size: 51 Copynumber: 3.2 Consensus size: 50
37041425 TAGTAAGCTG
*
37041435 CACATAGTACTACACATGTGACCATTACCATCCGATACACGTAGTAGCCTA
1 CACATAGTACTACACATGTGACCA-TACCATCCGGTACACGTAGTAGCCTA
* * * * * * * *
37041486 CACATAGAACTACACACGTGATCAAAACTATCTGGTACGCATAGTAGCCTA
1 CACATAGTACTACACATGTGA-CCATACCATCCGGTACACGTAGTAGCCTA
* *
37041537 CACATAGTACTACACATGCGACC-TATCATTCCGGTACACGTAGTAGCCTA
1 CACATAGTACTACACATGTGACCATACCA-TCCGGTACACGTAGTAGCCTA
37041587 CACATAGTACTA
1 CACATAGTACTA
37041599 TACACATGAC
Statistics
Matches: 92, Mismatches: 19, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
49 2 0.02
50 31 0.34
51 57 0.62
52 2 0.02
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (50 bp):
CACATAGTACTACACATGTGACCATACCATCCGGTACACGTAGTAGCCTA
Found at i:37047660 original size:138 final size:138
Alignment explanation
Indices: 37047412--37047834 Score: 668
Period size: 138 Copynumber: 3.1 Consensus size: 138
37047402 TAGAAAAATG
*
37047412 AATTATATTCTTTCCAAAAGAATATTAAATTT-CATGTTTTTTATATTTTGACCAAAATTAATTA
1 AATTATATTCTTTCCAAAAGAATATT-AATTTCCATGTCTTTTATATTTTGACCAAAATTAATTA
* * * * *
37047476 ATATAATTGTTCATAATAATAAATTTGGTAAAATATATATAATTAATATTTTTTATGAATCAAAT
65 ATATAAATGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAAT
37047541 TCATATATT
130 TCATATATT
* *
37047550 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTACATTTTGACTAAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
* * *
37047615 TATAAATGTTTATATTAATAAATTCGATAAAATATATACAATTAATATTTTGTACGAATCAAATT
66 TATAAATGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
37047680 CATATATT
131 CATATATT
* * *
37047688 ACTTATATTTTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCGAAATTAATTAA
1 AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
* * *
37047753 TATAACTATTTCTATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
66 TATAAATGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
37047818 CATATATT
131 CATATATT
*
37047826 AATTTTATT
1 AATTATATT
37047835 TATGTTCTCC
Statistics
Matches: 260, Mismatches: 24, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
137 5 0.02
138 255 0.98
ACGTcount: A:0.41, C:0.08, G:0.05, T:0.46
Consensus pattern (138 bp):
AATTATATTCTTTCCAAAAGAATATTAATTTCCATGTCTTTTATATTTTGACCAAAATTAATTAA
TATAAATGTTTATATTAATAAATTTGGTAAAATATATACAATTAATATTTTGTATGAATCAAATT
CATATATT
Found at i:37047917 original size:17 final size:17
Alignment explanation
Indices: 37047895--37047928 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
37047885 TCTAACTATC
37047895 AAATTAAATTAATTCAA
1 AAATTAAATTAATTCAA
*
37047912 AAATTAATTTAATTCAA
1 AAATTAAATTAATTCAA
37047929 GTGACAACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.56, C:0.06, G:0.00, T:0.38
Consensus pattern (17 bp):
AAATTAAATTAATTCAA
Found at i:37050056 original size:44 final size:43
Alignment explanation
Indices: 37049968--37050056 Score: 117
Period size: 44 Copynumber: 2.0 Consensus size: 43
37049958 CCATCACAGA
**
37049968 ATCAGTTTGGGCCTTAGCCCATTCAGATACAGTCTCAGAAATAC
1 ATCAGTTTGGGCCTTAGCCCATTCAGATACAGAATCAG-AATAC
*
37050012 ATCAGTTTGGGCCTTGGCCCATATCAGATACAGAATACAG-ATAC
1 ATCAGTTTGGGCCTTAGCCCAT-TCAGATACAGAAT-CAGAATAC
37050056 A
1 A
37050057 GTAAATCAGA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
44 26 0.65
45 11 0.28
46 3 0.08
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (43 bp):
ATCAGTTTGGGCCTTAGCCCATTCAGATACAGAATCAGAATAC
Found at i:37053443 original size:36 final size:30
Alignment explanation
Indices: 37053385--37053483 Score: 121
Period size: 29 Copynumber: 3.2 Consensus size: 30
37053375 CACAGGCGCC
37053385 CCTC-GAAACTGGTCAAACAAATAATCAAT
1 CCTCAGAAACTGGTCAAACAAATAATCAAT
*
37053414 CCTCAGAAGTGGATACTTGTCAAACAAATAATCAAT
1 CCTCAG-A----A-ACTGGTCAAACAAATAATCAAT
37053450 CCTC-GAAACTGGTCAAACAAATAATCAAT
1 CCTCAGAAACTGGTCAAACAAATAATCAAT
37053479 CCTCA
1 CCTCA
37053484 AGATACTCAA
Statistics
Matches: 60, Mismatches: 2, Indels: 15
0.78 0.03 0.19
Matches are distributed among these distances:
29 29 0.48
30 2 0.03
31 1 0.02
34 1 0.02
35 2 0.03
36 25 0.42
ACGTcount: A:0.42, C:0.24, G:0.11, T:0.22
Consensus pattern (30 bp):
CCTCAGAAACTGGTCAAACAAATAATCAAT
Found at i:37062896 original size:21 final size:20
Alignment explanation
Indices: 37062874--37062911 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37062864 TCTTCTTGTA
37062874 AAAAAAATCAAAAAAATAAT
1 AAAAAAATCAAAAAAATAAT
* *
37062894 AAAGAAATCGAAAAAATA
1 AAAAAAATCAAAAAAATA
37062912 TATATTTACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.13
Consensus pattern (20 bp):
AAAAAAATCAAAAAAATAAT
Found at i:37068650 original size:23 final size:23
Alignment explanation
Indices: 37068597--37068650 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
37068587 TTAAGGGGTT
*
37068597 ATAGAATACGTCACAAAGGCATC
1 ATAGAATACGCCACAAAGGCATC
* * * *
37068620 ACAAAATATGCCATAAAGGCATC
1 ATAGAATACGCCACAAAGGCATC
37068643 ATAGAATA
1 ATAGAATA
37068651 AATCTTATCG
Statistics
Matches: 24, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.48, C:0.19, G:0.15, T:0.19
Consensus pattern (23 bp):
ATAGAATACGCCACAAAGGCATC
Found at i:37072988 original size:40 final size:40
Alignment explanation
Indices: 37072917--37073062 Score: 177
Period size: 40 Copynumber: 3.6 Consensus size: 40
37072907 TGCTCAGACA
* * * *
37072917 AGCCTTACCTACTGAATCTACTAAAACGTATGCACTTTCG
1 AGCCATACCTATTGAATCTACTGAAATGTATGCACTTTCG
* * *
37072957 AGCCATACTTATTGAATCTATTGGAAA-GTATGCACTTTTG
1 AGCCATACCTATTGAATCTACT-GAAATGTATGCACTTTCG
* * *
37072997 AGCCACACCTACTGAATCTACTGAAATGTATGCACTTTCA
1 AGCCATACCTATTGAATCTACTGAAATGTATGCACTTTCG
*
37073037 AGCCATACCTATTAAATCTACTGAAA
1 AGCCATACCTATTGAATCTACTGAAA
37073063 AGAATGCTCT
Statistics
Matches: 89, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 4 0.04
40 82 0.92
41 3 0.03
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (40 bp):
AGCCATACCTATTGAATCTACTGAAATGTATGCACTTTCG
Found at i:37073535 original size:18 final size:19
Alignment explanation
Indices: 37073506--37073541 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
37073496 ACTTGTTTGC
*
37073506 TTAAGTTGAAATGAATGAT
1 TTAAGTTGAAATCAATGAT
37073525 TTAAG-TGAAATCAATGA
1 TTAAGTTGAAATCAATGA
37073542 CCCTATATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.44, C:0.03, G:0.19, T:0.33
Consensus pattern (19 bp):
TTAAGTTGAAATCAATGAT
Found at i:37076179 original size:17 final size:16
Alignment explanation
Indices: 37076155--37076187 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
37076145 TATAATATGT
37076155 TATTATTTATATTATA
1 TATTATTTATATTATA
37076171 TATTGATTTATATTATA
1 TATT-ATTTATATTATA
37076188 AAAAATAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (16 bp):
TATTATTTATATTATA
Found at i:37080207 original size:40 final size:40
Alignment explanation
Indices: 37080161--37080296 Score: 141
Period size: 40 Copynumber: 3.4 Consensus size: 40
37080151 GTTTGCATGA
37080161 AAAACGCCGCTAAAAATTGAGTATTAGCGGCGTTTTATAT
1 AAAACGCCGCTAAAAATTGAGTATTAGCGGCGTTTTATAT
* * * * *
37080201 AAAACGCCGCTAAAGATCGAGCATTAGCGGCGCTTTA-AGG
1 AAAACGCCGCTAAAAATTGAGTATTAGCGGCGTTTTATA-T
* * * * *
37080241 AAAATGCCGCTAATAA-TGAGTATTAGCGCCGTTTTTTGT
1 AAAACGCCGCTAAAAATTGAGTATTAGCGGCGTTTTATAT
*
37080280 AAAAACGCCGCAAAAAA
1 -AAAACGCCGCTAAAAA
37080297 CCTAAACCCA
Statistics
Matches: 75, Mismatches: 18, Indels: 6
0.76 0.18 0.06
Matches are distributed among these distances:
39 16 0.21
40 59 0.79
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.24
Consensus pattern (40 bp):
AAAACGCCGCTAAAAATTGAGTATTAGCGGCGTTTTATAT
Found at i:37080434 original size:42 final size:41
Alignment explanation
Indices: 37080330--37080474 Score: 209
Period size: 41 Copynumber: 3.5 Consensus size: 41
37080320 CTTACCTTTT
* * *
37080330 AGGGCTTTAGTGGCGTTTTTGTAGAAGCGCCGCTAATGCTC
1 AGGGCTTTAGCGGCGTTTTTGGAGAAGCACCGCTAATGCTC
*
37080371 AGGCCTTTAGCGGCGTTTTTGGAGAAGCACCGCTAATGCTC
1 AGGGCTTTAGCGGCGTTTTTGGAGAAGCACCGCTAATGCTC
* * * *
37080412 AAGGGCTTTAGTGGCGTTTTTGGAGAAACACCGCTAATACTG
1 -AGGGCTTTAGCGGCGTTTTTGGAGAAGCACCGCTAATGCTC
37080454 AGGGCTTTAGCGGCGTTTTTG
1 AGGGCTTTAGCGGCGTTTTTG
37080475 TAAAGGCGCC
Statistics
Matches: 93, Mismatches: 10, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
41 57 0.61
42 36 0.39
ACGTcount: A:0.19, C:0.19, G:0.31, T:0.30
Consensus pattern (41 bp):
AGGGCTTTAGCGGCGTTTTTGGAGAAGCACCGCTAATGCTC
Found at i:37080889 original size:14 final size:14
Alignment explanation
Indices: 37080794--37080945 Score: 94
Period size: 14 Copynumber: 10.9 Consensus size: 14
37080784 TATCTCTATA
*
37080794 GTTTAAGGTTTTTG
1 GTTTAAGGTTTATG
* *
37080808 GTTTAGGGTATATG
1 GTTTAAGGTTTATG
* *
37080822 GTAT-AGAGTTTAAG
1 GTTTAAG-GTTTATG
* *
37080836 GTTTATGGATTATGG
1 GTTTAAGGTTTAT-G
* *
37080851 GTTTAGGGGTTATG
1 GTTTAAGGTTTATG
*
37080865 ATTTATA-GTTTATG
1 GTTTA-AGGTTTATG
*
37080879 GTTTAAGGTTTAGG
1 GTTTAAGGTTTATG
* *
37080893 GGTTACGGTTTATG
1 GTTTAAGGTTTATG
*
37080907 GTTTAAGG-TTATA
1 GTTTAAGGTTTATG
* * **
37080920 GATTAAGGGTTGGG
1 GTTTAAGGTTTATG
37080934 GTTTAAGGTTTA
1 GTTTAAGGTTTA
37080946 GGGGTTAGGG
Statistics
Matches: 101, Mismatches: 31, Indels: 12
0.70 0.22 0.08
Matches are distributed among these distances:
13 13 0.13
14 75 0.74
15 13 0.13
ACGTcount: A:0.22, C:0.01, G:0.32, T:0.45
Consensus pattern (14 bp):
GTTTAAGGTTTATG
Found at i:37080902 original size:21 final size:20
Alignment explanation
Indices: 37080878--37080996 Score: 64
Period size: 21 Copynumber: 5.7 Consensus size: 20
37080868 TATAGTTTAT
37080878 GGTTTAAGGTTTAGGGGTTA
1 GGTTTAAGGTTTAGGGGTTA
* *
37080898 CGGTTTATGGTTTA-AGGTTA
1 -GGTTTAAGGTTTAGGGGTTA
* * *
37080918 TAGATTAAGGGTT-GGGGTTTAA
1 -GGTTTAAGGTTTAGGGG-TT-A
* *
37080940 GGTTTAGGGGTTAGGGGTTGA
1 GGTTTAAGGTTTAGGGGTT-A
*
37080961 GGGTTAAGAG-TTAGGGGTTTA
1 GGTTTAAG-GTTTAGGGG-TTA
*
37080982 GGATTTAGGGTTTAG
1 GG-TTTAAGGTTTAG
37080997 ATTAATTAGT
Statistics
Matches: 74, Mismatches: 16, Indels: 15
0.70 0.15 0.14
Matches are distributed among these distances:
20 15 0.20
21 43 0.58
22 16 0.22
ACGTcount: A:0.21, C:0.01, G:0.40, T:0.38
Consensus pattern (20 bp):
GGTTTAAGGTTTAGGGGTTA
Found at i:37080978 original size:14 final size:13
Alignment explanation
Indices: 37080922--37080979 Score: 53
Period size: 14 Copynumber: 4.2 Consensus size: 13
37080912 AGGTTATAGA
37080922 TTAAGGGTTGGGG
1 TTAAGGGTTGGGG
*
37080935 TTTAAGGTTTAGGGG
1 -TTAAGGGTT-GGGG
*
37080950 TTAGGGGTTGAGGG
1 TTAAGGGTTG-GGG
*
37080964 TTAAGAGTTAGGGG
1 TTAAGGGTT-GGGG
37080978 TT
1 TT
37080980 TAGGATTTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
13 1 0.03
14 30 0.83
15 5 0.14
ACGTcount: A:0.19, C:0.00, G:0.47, T:0.34
Consensus pattern (13 bp):
TTAAGGGTTGGGG
Found at i:37081122 original size:16 final size:17
Alignment explanation
Indices: 37081103--37081144 Score: 68
Period size: 16 Copynumber: 2.5 Consensus size: 17
37081093 AAATTATTTA
37081103 TAAATAATTT-ATATAT
1 TAAATAATTTAATATAT
37081119 TAAATAATTTAATATAT
1 TAAATAATTTAATATAT
37081136 TAAAATAAT
1 T-AAATAAT
37081145 GATTATAGTG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
16 10 0.42
17 7 0.29
18 7 0.29
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TAAATAATTTAATATAT
Found at i:37081899 original size:53 final size:53
Alignment explanation
Indices: 37081841--37081946 Score: 212
Period size: 53 Copynumber: 2.0 Consensus size: 53
37081831 AATTTGATAT
37081841 GTGAGAGATTAATTGCTTACATTCGATAATTCTAACTTAATAATTAATTACAG
1 GTGAGAGATTAATTGCTTACATTCGATAATTCTAACTTAATAATTAATTACAG
37081894 GTGAGAGATTAATTGCTTACATTCGATAATTCTAACTTAATAATTAATTACAG
1 GTGAGAGATTAATTGCTTACATTCGATAATTCTAACTTAATAATTAATTACAG
37081947 TCATTTTATC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.38, C:0.11, G:0.13, T:0.38
Consensus pattern (53 bp):
GTGAGAGATTAATTGCTTACATTCGATAATTCTAACTTAATAATTAATTACAG
Found at i:37086996 original size:43 final size:43
Alignment explanation
Indices: 37086932--37087216 Score: 342
Period size: 43 Copynumber: 6.6 Consensus size: 43
37086922 ACGGTATTTT
* * * *
37086932 TAGCGGTGTTTGT-AATCAAAGCGTCGCTAAAGGTCTTGAGCTA
1 TAGCGGCGTTTGTGAA-AAAAGCGCCGCTAAAGGTCTTGATCTA
* * * *
37086975 TAGCGGCGTTTTTGAAAAAAGCGTCGCTAAAGATCATGATCTA
1 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGATCTA
*
37087018 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGATCTA
1 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGATCTA
*
37087061 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGTTCTA
1 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * *
37087104 TAGCGGCGTTTGT-AAAAAAGTGCCACTAAAGATCATGATCTA
1 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * * **
37087146 TAGTGGCGTTCGTGGAAAAAGCGCCGCTAGAGGTCCAGATCTA
1 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGATCTA
37087189 TAGCGGCGTTTGTAGGAAAAAA-CGCCGC
1 TAGCGGCGTTTGT--GAAAAAAGCGCCGC
37087217 AAACGTTTGC
Statistics
Matches: 208, Mismatches: 30, Indels: 7
0.85 0.12 0.03
Matches are distributed among these distances:
42 35 0.17
43 159 0.76
44 8 0.04
45 6 0.03
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (43 bp):
TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGATCTA
Found at i:37087180 original size:128 final size:129
Alignment explanation
Indices: 37086932--37087216 Score: 380
Period size: 128 Copynumber: 2.2 Consensus size: 129
37086922 ACGGTATTTT
* * * *
37086932 TAGCGGTGTTTGT-AATCAAAGCGTCGCTAAAGGTCTTGAGCTATAGCGGCGTTTTTGAAAAAAG
1 TAGCGGCGTTTGTGAA-AAAAGCGCCGCTAAAGGTCTTGAGCTATAGCGGCGTTTGTGAAAAAAG
* * * **
37086996 CGTCGCTAAAGATCATGATCTATAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGATCTA
65 CGCCACTAAAGATCATGATCTATAGCGGCGTTCGTGAGAAAAGCGCCGCTAAAGGTCCAGATCTA
** *
37087061 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGTTCTATAGCGGCGTTTGT-AAAAAAGT
1 TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGAGCTATAGCGGCGTTTGTGAAAAAAGC
* *
37087125 GCCACTAAAGATCATGATCTATAGTGGCGTTCGTG-GAAAAAGCGCCGCTAGAGGTCCAGATCTA
66 GCCACTAAAGATCATGATCTATAGCGGCGTTCGTGAG-AAAAGCGCCGCTAAAGGTCCAGATCTA
37087189 TAGCGGCGTTTGTAGGAAAAAA-CGCCGC
1 TAGCGGCGTTTGT--GAAAAAAGCGCCGC
37087217 AAACGTTTGC
Statistics
Matches: 138, Mismatches: 14, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
127 1 0.01
128 75 0.54
129 53 0.38
130 9 0.07
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (129 bp):
TAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGAGCTATAGCGGCGTTTGTGAAAAAAGC
GCCACTAAAGATCATGATCTATAGCGGCGTTCGTGAGAAAAGCGCCGCTAAAGGTCCAGATCTA
Found at i:37088720 original size:3 final size:3
Alignment explanation
Indices: 37088703--37088750 Score: 78
Period size: 3 Copynumber: 15.3 Consensus size: 3
37088693 CTTGGCAATT
37088703 TTA TTA TTTA GTTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
37088750 T
1 T
37088751 CTACTTATCT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
3 37 0.86
4 6 0.14
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:37091117 original size:19 final size:19
Alignment explanation
Indices: 37091077--37091119 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
37091067 ATCTCTTTAG
* *
37091077 GCATTCATTTCATGCATGT
1 GCATTCATTGCATGCATAT
37091096 GCATTGCATTGCAT-CATAT
1 GCATT-CATTGCATGCATAT
37091115 GCATT
1 GCATT
37091120 AGATTTTCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.23, C:0.21, G:0.16, T:0.40
Consensus pattern (19 bp):
GCATTCATTGCATGCATAT
Found at i:37093231 original size:144 final size:144
Alignment explanation
Indices: 37092971--37093250 Score: 398
Period size: 144 Copynumber: 1.9 Consensus size: 144
37092961 GTGGGAGCAA
* * *
37092971 AAAAAAAACTGCTACCGGGGCAACATATTGGCTTATCGCAGTTTTGCTCATCAAGGTTAAGATTC
1 AAAAAAAACTGCTACCGGGGCAACATATTGGCTTATCACAGTTTTCCTCATCAAGGTCAAGATTC
* * * * *
37093036 CTTCTCTCTGAGTGTTGGATCAGATCTCGATTGAAGAGAAATGTTCAAAGTTATCTGTCTTGGTC
66 CTTCTCTCTGAGTGTTGGATCAGATCCCAATTAAAGAGAAATGTTCAAAGTTATCCGTCTGGGTC
37093101 AAATGCGAAAAAAG
131 AAATGCGAAAAAAG
** * * ***
37093115 AAAAAAAACTGCTGTCGGGGTAACATATTGGCTTATCATAGTTTTCCTCATTGGGGTCAAGATTC
1 AAAAAAAACTGCTACCGGGGCAACATATTGGCTTATCACAGTTTTCCTCATCAAGGTCAAGATTC
* *
37093180 TTTCTCTCTGAGTGTTGGATCAGATCCCAATTAAAGAGAAATGTTTAAAGTTATCCGTCTGGGTC
66 CTTCTCTCTGAGTGTTGGATCAGATCCCAATTAAAGAGAAATGTTCAAAGTTATCCGTCTGGGTC
*
37093245 GAATGC
131 AAATGC
37093251 TCCAAAAACA
Statistics
Matches: 118, Mismatches: 18, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
144 118 1.00
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31
Consensus pattern (144 bp):
AAAAAAAACTGCTACCGGGGCAACATATTGGCTTATCACAGTTTTCCTCATCAAGGTCAAGATTC
CTTCTCTCTGAGTGTTGGATCAGATCCCAATTAAAGAGAAATGTTCAAAGTTATCCGTCTGGGTC
AAATGCGAAAAAAG
Found at i:37093524 original size:11 final size:10
Alignment explanation
Indices: 37093508--37093572 Score: 71
Period size: 10 Copynumber: 6.5 Consensus size: 10
37093498 AAAGGTAAAA
37093508 AAAAAAGAAG
1 AAAAAAGAAG
*
37093518 AAGAAAAGAAA
1 AA-AAAAGAAG
37093529 AAGAAAAGAA-
1 AA-AAAAGAAG
37093539 AAAAAAGAA-
1 AAAAAAGAAG
*
37093548 AAAAATGAAG
1 AAAAAAGAAG
*
37093558 AAAAAAAAAG
1 AAAAAAGAAG
37093568 AAAAA
1 AAAAA
37093573 GGAGAGGCTA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
9 15 0.31
10 17 0.35
11 17 0.35
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (10 bp):
AAAAAAGAAG
Found at i:37093535 original size:22 final size:20
Alignment explanation
Indices: 37093489--37093573 Score: 91
Period size: 22 Copynumber: 4.0 Consensus size: 20
37093479 AAGAATTTTC
* *
37093489 AAAAGAAAAAAAGGTAAAAAA
1 AAAAGAAAAAAAAG-AAAAAG
37093510 AAAAGAAGAAGAAAAGAAAAAG
1 AAAAGAA-AA-AAAAGAAAAAG
37093532 AAAAGAAAAAAAAGAAAAA-
1 AAAAGAAAAAAAAGAAAAAG
37093551 AATGAAGAAAAAAAAAGAAAAAG
1 AA--AAG-AAAAAAAAGAAAAAG
37093574 GAGAGGCTAA
Statistics
Matches: 56, Mismatches: 2, Indels: 10
0.82 0.03 0.15
Matches are distributed among these distances:
19 2 0.04
20 10 0.18
21 12 0.21
22 28 0.50
23 4 0.07
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.02
Consensus pattern (20 bp):
AAAAGAAAAAAAAGAAAAAG
Found at i:37093537 original size:43 final size:42
Alignment explanation
Indices: 37093489--37093573 Score: 118
Period size: 42 Copynumber: 2.0 Consensus size: 42
37093479 AAGAATTTTC
* *
37093489 AAAAGAAAAAAAGGTAAAAAAA-AAAGAAGAAGAAAAGAAAAAG
1 AAAAGAAAAAAAAG-AAAAAAATAAAGAA-AAAAAAAGAAAAAG
*
37093532 AAAAGAAAAAAAAGAAAAAAATGAAGAAAAAAAAAGAAAAAG
1 AAAAGAAAAAAAAGAAAAAAATAAAGAAAAAAAAAGAAAAAG
37093574 GAGAGGCTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
42 20 0.53
43 18 0.47
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.02
Consensus pattern (42 bp):
AAAAGAAAAAAAAGAAAAAAATAAAGAAAAAAAAAGAAAAAG
Found at i:37093541 original size:31 final size:30
Alignment explanation
Indices: 37093506--37093572 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 30
37093496 AAAAAGGTAA
*
37093506 AAAAAAAAGAAGAAGAA-AAGAAAAAGAAAAG
1 AAAAAAAAGAA-AAAAAGAAGAAAAA-AAAAG
37093537 AAAAAAAAGAAAAAAATGAAGAAAAAAAAAG
1 AAAAAAAAGAAAAAAA-GAAGAAAAAAAAAG
37093568 AAAAA
1 AAAAA
37093573 GGAGAGGCTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
30 4 0.12
31 21 0.64
32 8 0.24
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.01
Consensus pattern (30 bp):
AAAAAAAAGAAAAAAAGAAGAAAAAAAAAG
Found at i:37093573 original size:37 final size:35
Alignment explanation
Indices: 37093504--37093571 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 35
37093494 AAAAAAAGGT
*
37093504 AAAAAAAAAAGAAGAAGAAAAGAAAAAGAAAAGAA
1 AAAAAAAAAAAAAGAAGAAAAGAAAAAGAAAAGAA
37093539 AAAAAAGAAAAAAATGAAGAAAA-AAAAAGAAAA
1 AAAAAA-AAAAAAA-GAAGAAAAGAAAAAGAAAA
37093572 AGGAGAGGCT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
35 6 0.20
36 16 0.53
37 8 0.27
ACGTcount: A:0.84, C:0.00, G:0.15, T:0.01
Consensus pattern (35 bp):
AAAAAAAAAAAAAGAAGAAAAGAAAAAGAAAAGAA
Found at i:37094016 original size:92 final size:95
Alignment explanation
Indices: 37093899--37094083 Score: 279
Period size: 97 Copynumber: 2.0 Consensus size: 95
37093889 TCTCATTTCG
*
37093899 TATCTTAGCAAATTTGCTATCTTGATT-ATTTA-T-T-TCGAGCTTTGTTCTCAATAAAATTTCA
1 TATCTTAGCAAATTTGCTATCTTGATTAATTTATTATCTCGAGCTTTGTTCTCAATAAAATTACA
* *
37093960 TCTTATCTATTGTGATAATCTTTTTCATCT
66 TCTTATCCATTGTAATAATCTTTTTCATCT
*
37093990 TATCTTAGCAAAATTTTCTATCTTGATTAATTTATTCATCTCGAGCTTTGTTCTCAATAAAATTA
1 TATCTTAGC-AAATTTGCTATCTTGATTAATTTATT-ATCTCGAGCTTTGTTCTCAATAAAATTA
*
37094055 CATCTTGTCCATTGTAATAATCTTTTTCA
64 CATCTTATCCATTGTAATAATCTTTTTCA
37094084 AGCATTTTTT
Statistics
Matches: 83, Mismatches: 5, Indels: 6
0.88 0.05 0.06
Matches are distributed among these distances:
91 9 0.11
92 17 0.20
93 5 0.06
94 1 0.01
96 1 0.01
97 50 0.60
ACGTcount: A:0.27, C:0.16, G:0.08, T:0.49
Consensus pattern (95 bp):
TATCTTAGCAAATTTGCTATCTTGATTAATTTATTATCTCGAGCTTTGTTCTCAATAAAATTACA
TCTTATCCATTGTAATAATCTTTTTCATCT
Found at i:37095051 original size:46 final size:46
Alignment explanation
Indices: 37094982--37095821 Score: 1071
Period size: 46 Copynumber: 18.3 Consensus size: 46
37094972 AAAAAAACAA
* * * *
37094982 ATCTTGTCTTCCTGTATCAGGCAG-GGAAGTAAATCAAAGATAGCAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGG-AGTAGATCGAAGAAAGCAG
* *
37095028 ATCTTGTCTTCCTGTATTTGGCAGCGGAGTAGATCGAAGATAGCAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
* * * ** *
37095074 ATCTTATCTTCCTATATTAGACAGCAAAGTAGATCGAAGAAAGTAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
* *
37095120 ATCTTGTCTTCCTGTATTAGGCAGCGGGGTAGATTGAAGAAAGCAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
* * * *
37095166 ATCTTGTCTTCCTGTATTTGGCAGCAGAGTAGATCAAAGATAGCAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
* * * *
37095212 ATCTTGTCTTCCTGTATTAGGCAGCGAAGTAGATCAAAGATAGTAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
* *
37095258 ATCTTGTCTTCCTGTATTAGACAGCGGATTAGATCGAAGAAAGCAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
* * * *
37095304 ATCTTGTCTTCCTGTATTTGACAGCGGAGTAGATCGAAGATAGTAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
*
37095350 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTATATCGAAGAAAGCAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
* * *
37095396 ATCTTGTCTTCCTGTATTTGGCAGCGAAGTAGATCGAAGATAGCAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
* * *
37095442 ATCTTGTCTTCCTGTATTTGGCAGTGGAGTAGATCGAAGATAGCAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
*** * *
37095488 ATCTTGTCTTCCTGTATTTTACAGCGGAGTAAATCGAAGATAGCAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
* * * *
37095534 ATCTTGTCTT-CTATATTTGGCAGCGGAGTAGATC-AAAAAAGTAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
* *
37095578 ATCTTGTCTTCCTATATTAGGCAGCGGAGTAGATCGAAGAAAGTAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
* *
37095624 ATCTTGTCTTTCTGTATTAGGCAGCGGAGTGGATCGAAGAAAGCAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
* * * * **
37095670 ATCTTGTCTTCCTGTTTTTGGCAGCGGAGTAGAT-AAAAAAAATAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
* *
37095715 ATCTTGTCTTCCTTTATTAGGCAGCGGAGTAGATCGAAAAAAGCAG
1 ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
* * **
37095761 ATATTGTCTTCTTGTAGTT-GGCAGCGGAGTAGATCGAAG-TTGCAG
1 ATCTTGTCTTCCTGTA-TTAGGCAGCGGAGTAGATCGAAGAAAGCAG
*
37095806 ATCTTGCCTTCCTGTA
1 ATCTTGTCTTCCTGTA
37095822 CTGACGGCGA
Statistics
Matches: 698, Mismatches: 91, Indels: 11
0.87 0.11 0.01
Matches are distributed among these distances:
44 17 0.02
45 98 0.14
46 579 0.83
47 4 0.01
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (46 bp):
ATCTTGTCTTCCTGTATTAGGCAGCGGAGTAGATCGAAGAAAGCAG
Found at i:37096015 original size:44 final size:44
Alignment explanation
Indices: 37095967--37096148 Score: 110
Period size: 44 Copynumber: 4.1 Consensus size: 44
37095957 GGAATAAATT
* *
37095967 AAAGATTGCGGATCCTGTCTCCCTAAGCAGTAGTGGAGCAGATC
1 AAAGATTGCAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATC
* * *
37096011 AAAGATT--ATGAATCTTATCTTCCC-AAG-A-TAGTGGAGAAGTAGATT
1 AAAGATTGCA-G-ATCCTATC-TCCCTAAGCAGTAGT-G-G-AGCAGATC
* * ** *
37096056 TAAGCCATT--AG-TCCTATCTCCCTAAGCAGTAGTAGAATAGGTC
1 AAAG--ATTGCAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATC
* * * *
37096099 AAAGATTGCAGATTCTGTCCCCCTAAGCAATAGTGGAGCAGATC
1 AAAGATTGCAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATC
37096143 AAAGAT
1 AAAGAT
37096149 GTGGAGCAGA
Statistics
Matches: 104, Mismatches: 20, Indels: 28
0.68 0.13 0.18
Matches are distributed among these distances:
41 3 0.03
42 4 0.04
43 17 0.16
44 57 0.55
45 14 0.13
46 5 0.05
47 4 0.04
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (44 bp):
AAAGATTGCAGATCCTATCTCCCTAAGCAGTAGTGGAGCAGATC
Found at i:37097494 original size:3 final size:3
Alignment explanation
Indices: 37097486--37097516 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
37097476 CTTGGCAATT
37097486 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
37097517 CTACTTATCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:37097600 original size:18 final size:17
Alignment explanation
Indices: 37097554--37097606 Score: 61
Period size: 18 Copynumber: 3.0 Consensus size: 17
37097544 TCAAATTTCG
*
37097554 ATATATACATATATATAT
1 ATATATACATATAT-TTT
* *
37097572 ATATGTGCATATATTTT
1 ATATATACATATATTTT
37097589 ATGATATACATATATTTT
1 AT-ATATACATATATTTT
37097607 TTTATGACTT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
17 4 0.14
18 25 0.86
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.49
Consensus pattern (17 bp):
ATATATACATATATTTT
Found at i:37099038 original size:21 final size:21
Alignment explanation
Indices: 37098997--37099040 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
37098987 TCAAGTACAG
* *
37098997 TTAAAAAGATTTTACCATAAA
1 TTAAAAAGATGTGACCATAAA
37099018 TTAAAAAGATGTGATCC-TAAA
1 TTAAAAAGATGTGA-CCATAAA
37099039 TT
1 TT
37099041 TAGAAGGACT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.48, C:0.09, G:0.09, T:0.34
Consensus pattern (21 bp):
TTAAAAAGATGTGACCATAAA
Found at i:37101988 original size:107 final size:110
Alignment explanation
Indices: 37101782--37102089 Score: 441
Period size: 107 Copynumber: 2.8 Consensus size: 110
37101772 TCAAAAAACA
37101782 AAAAATTTTATAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCT
1 AAAAA-TTTATAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCT
* *
37101847 GGGTGTCGATTTTTCTCGTTCAACGAAATGGCTTAATAT-CTTTTT
65 GGGTGTCGATTTTTCTCGTTCAACCAAATAGCTTAATATCCTTTTT
* * *
37101892 AAAAATTT-TAAAT-AGGTAATGTTTTGCGTTTGGAAATTTGAGAAAACATGCCGTAAGGTGCTG
1 AAAAATTTATAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
*
37101955 GGTGTCGATTTTTCTTGTTCAACCAAATAGCTTAATATCCTTTTT
66 GGTGTCGATTTTTCTCGTTCAACCAAATAGCTTAATATCCTTTTT
* ** *
37102000 AAAAATTTCA-AAATAAGGCAATATTTTGCGTTTGGAAATTCGAG-GGACGTGCCCTAAGGTGCT
1 AAAAATTT-ATAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCT
* *
37102063 GGGTTTCGA--TTTCTCGTTTAACCAAAT
65 GGGTGTCGATTTTTCTCGTTCAACCAAAT
37102090 TGCCAAATAT
Statistics
Matches: 178, Mismatches: 16, Indels: 11
0.87 0.08 0.05
Matches are distributed among these distances:
107 98 0.55
108 19 0.11
109 30 0.17
110 31 0.17
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.36
Consensus pattern (110 bp):
AAAAATTTATAAATAAGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACATGCCCTAAGGTGCTG
GGTGTCGATTTTTCTCGTTCAACCAAATAGCTTAATATCCTTTTT
Found at i:37103030 original size:15 final size:15
Alignment explanation
Indices: 37102987--37103032 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
37102977 GTAAGCCTAT
* *
37102987 ATTTAATTTTTTTAG
1 ATTTATTTTTTTTAA
* *
37103002 ATTAATTTTATTTAA
1 ATTTATTTTTTTTAA
37103017 ATTTATTTTTTTTAA
1 ATTTATTTTTTTTAA
37103032 A
1 A
37103033 AATATAATAC
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (15 bp):
ATTTATTTTTTTTAA
Found at i:37103267 original size:22 final size:23
Alignment explanation
Indices: 37103234--37103276 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
37103224 TTTTTATTGG
*
37103234 ATTAGTAATTTAATATATATATA
1 ATTAGTAATTTAACATATATATA
37103257 ATTA-TAATTTAACATATATA
1 ATTAGTAATTTAACATATATA
37103277 ATTAATATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.49, C:0.02, G:0.02, T:0.47
Consensus pattern (23 bp):
ATTAGTAATTTAACATATATATA
Found at i:37107050 original size:25 final size:25
Alignment explanation
Indices: 37107013--37107324 Score: 104
Period size: 25 Copynumber: 12.5 Consensus size: 25
37107003 AAACCAAACC
** *
37107013 AAGCCTTCATGGTGATTTATTTGGG
1 AAGCCTTTGTGGTGATTTACTTGGG
* * * ***
37107038 AAGCCTTTGTGGTGAGTCACCTATA
1 AAGCCTTTGTGGTGATTTACTTGGG
* *
37107063 AAGCCTTTGTGGGGATTTATTTGGG
1 AAGCCTTTGTGGTGATTTACTTGGG
*** * * * *
37107088 AAGCCTTTACAGTAAGTCACTTGTG
1 AAGCCTTTGTGGTGATTTACTTGGG
*
37107113 AAGCTTTTGTGGTGATTTACTTGGG
1 AAGCCTTTGTGGTGATTTACTTGGG
* * * * **
37107138 AAGCCTTTGTGGCGAGTCACCTGTA
1 AAGCCTTTGTGGTGATTTACTTGGG
* ** * *
37107163 AAG-CTCTTGTAGCAATTTATTTAGG
1 AAGCCT-TTGTGGTGATTTACTTGGG
** * * * **
37107188 AAGCCTTTGTGGCAAGTCACCTGTA
1 AAGCCTTTGTGGTGATTTACTTGGG
* ** *
37107213 AAGCCCTTGTGGAAATTTATTTGGG
1 AAGCCTTTGTGGTGATTTACTTGGG
* * * * * **
37107238 AAGCCTTTCTGGCGAGTCACCTGTA
1 AAGCCTTTGTGGTGATTTACTTGGG
*
37107263 AAGCCTTTGTGGTGATTTATTTGGG
1 AAGCCTTTGTGGTGATTTACTTGGG
* * * * **
37107288 GAGCCCTTGTGGTAAGTTACTTGTA
1 AAGCCTTTGTGGTGATTTACTTGGG
*
37107313 AAGCCTATGTGG
1 AAGCCTTTGTGG
37107325 CGTAATGTCT
Statistics
Matches: 191, Mismatches: 94, Indels: 4
0.66 0.33 0.01
Matches are distributed among these distances:
24 2 0.01
25 187 0.98
26 2 0.01
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.35
Consensus pattern (25 bp):
AAGCCTTTGTGGTGATTTACTTGGG
Found at i:37107067 original size:50 final size:50
Alignment explanation
Indices: 37107013--37107324 Score: 338
Period size: 50 Copynumber: 6.2 Consensus size: 50
37107003 AAACCAAACC
** ** *
37107013 AAGCCTTCATGGTGATTTATTTGGGAAGCCTTTGTGGTGAGTCACCTATA
1 AAGCCTTTGTGGTGATTTATTTGGGAAGCCTTTGTGGCAAGTCACCTGTA
* *** * * *
37107063 AAGCCTTTGTGGGGATTTATTTGGGAAGCCTTTACAGTAAGTCACTTGTG
1 AAGCCTTTGTGGTGATTTATTTGGGAAGCCTTTGTGGCAAGTCACCTGTA
* * *
37107113 AAGCTTTTGTGGTGATTTACTTGGGAAGCCTTTGTGGCGAGTCACCTGTA
1 AAGCCTTTGTGGTGATTTATTTGGGAAGCCTTTGTGGCAAGTCACCTGTA
* ** *
37107163 AAG-CTCTTGTAGCAATTTATTTAGGAAGCCTTTGTGGCAAGTCACCTGTA
1 AAGCCT-TTGTGGTGATTTATTTGGGAAGCCTTTGTGGCAAGTCACCTGTA
* ** * *
37107213 AAGCCCTTGTGGAAATTTATTTGGGAAGCCTTTCTGGCGAGTCACCTGTA
1 AAGCCTTTGTGGTGATTTATTTGGGAAGCCTTTGTGGCAAGTCACCTGTA
* * * * *
37107263 AAGCCTTTGTGGTGATTTATTTGGGGAGCCCTTGTGGTAAGTTACTTGTA
1 AAGCCTTTGTGGTGATTTATTTGGGAAGCCTTTGTGGCAAGTCACCTGTA
*
37107313 AAGCCTATGTGG
1 AAGCCTTTGTGG
37107325 CGTAATGTCT
Statistics
Matches: 216, Mismatches: 44, Indels: 4
0.82 0.17 0.02
Matches are distributed among these distances:
49 1 0.00
50 214 0.99
51 1 0.00
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.35
Consensus pattern (50 bp):
AAGCCTTTGTGGTGATTTATTTGGGAAGCCTTTGTGGCAAGTCACCTGTA
Found at i:37107298 original size:150 final size:150
Alignment explanation
Indices: 37107027--37107299 Score: 386
Period size: 150 Copynumber: 1.8 Consensus size: 150
37107017 CTTCATGGTG
* ** * **
37107027 ATTTATTTGGGAAGCCTTTGTGGTGAGTCACCTATAAAGCCTTTGTGGGGATTTATTTGGGAAGC
1 ATTTATTTAGGAAGCCTTTGTGGCAAGTCACCTATAAAGCCCTTGTGGAAATTTATTTGGGAAGC
* * * * *
37107092 CTTTACAGTAAGTCACTTGTGAAGCTTTTGTGGTGATTTACTTGGGAAGCCTTTGTGGCGAGTCA
66 CTTTACAGCAAGTCACCTGTAAAGCCTTTGTGGTGATTTACTTGGGAAGCCCTTGTGGCGAGTCA
37107157 CCTGTAAAGCTCTTGTAGCA
131 CCTGTAAAGCTCTTGTAGCA
*
37107177 ATTTATTTAGGAAGCCTTTGTGGCAAGTCACCTGTAAAGCCCTTGTGGAAATTTATTTGGGAAGC
1 ATTTATTTAGGAAGCCTTTGTGGCAAGTCACCTATAAAGCCCTTGTGGAAATTTATTTGGGAAGC
* * * *
37107242 CTTT-CTGGCGAGTCACCTGTAAAGCCTTTGTGGTGATTTATTTGGGGAGCCCTTGTGG
66 CTTTAC-AGCAAGTCACCTGTAAAGCCTTTGTGGTGATTTACTTGGGAAGCCCTTGTGG
37107300 TAAGTTACTT
Statistics
Matches: 106, Mismatches: 16, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
149 1 0.01
150 105 0.99
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.36
Consensus pattern (150 bp):
ATTTATTTAGGAAGCCTTTGTGGCAAGTCACCTATAAAGCCCTTGTGGAAATTTATTTGGGAAGC
CTTTACAGCAAGTCACCTGTAAAGCCTTTGTGGTGATTTACTTGGGAAGCCCTTGTGGCGAGTCA
CCTGTAAAGCTCTTGTAGCA
Found at i:37110553 original size:20 final size:21
Alignment explanation
Indices: 37110517--37110561 Score: 65
Period size: 20 Copynumber: 2.2 Consensus size: 21
37110507 AATGTTACTA
*
37110517 AAAGAAATGTTTTCAAAATGC
1 AAAGAAATGTTTCCAAAATGC
*
37110538 AAAGAAA-GTTTCCAAAATTC
1 AAAGAAATGTTTCCAAAATGC
37110558 AAAG
1 AAAG
37110562 TGACCAAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.51, C:0.11, G:0.13, T:0.24
Consensus pattern (21 bp):
AAAGAAATGTTTCCAAAATGC
Found at i:37119067 original size:10 final size:10
Alignment explanation
Indices: 37119052--37119081 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
37119042 TGTGTGATGA
37119052 TATAATATGT
1 TATAATATGT
37119062 TATAATATGT
1 TATAATATGT
37119072 TATAAT-TGT
1 TATAATATGT
37119081 T
1 T
37119082 TTATCATTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 4 0.20
10 16 0.80
ACGTcount: A:0.37, C:0.00, G:0.10, T:0.53
Consensus pattern (10 bp):
TATAATATGT
Found at i:37119362 original size:37 final size:37
Alignment explanation
Indices: 37119285--37119362 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
37119275 TTTTTTGACT
* * *
37119285 TGTTTTCGGTTGGACTAGCTCTTATAAGCATCTTGTG
1 TGTTTTCGGTTGGACTAGCTCTTAGAAGCATCTGGCG
* * *
37119322 TGTTTTTGGTTGGACTAGCTGTTAGGAGCATCTGGCG
1 TGTTTTCGGTTGGACTAGCTCTTAGAAGCATCTGGCG
37119359 TGTT
1 TGTT
37119363 ATCAGGTGGT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.14, C:0.14, G:0.29, T:0.42
Consensus pattern (37 bp):
TGTTTTCGGTTGGACTAGCTCTTAGAAGCATCTGGCG
Found at i:37130229 original size:24 final size:23
Alignment explanation
Indices: 37130185--37130229 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 23
37130175 CCTACTTTTG
*
37130185 CTCCCACTCCTTCTGTCATTTCT
1 CTCCCACTCCTTCTGTAATTTCT
37130208 CTCCCTACTCC-TCTGTTAATTT
1 CTCCC-ACTCCTTCTG-TAATTT
37130230 GGTTTCACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.11, C:0.40, G:0.04, T:0.44
Consensus pattern (23 bp):
CTCCCACTCCTTCTGTAATTTCT
Found at i:37132920 original size:57 final size:57
Alignment explanation
Indices: 37132821--37132943 Score: 149
Period size: 57 Copynumber: 2.1 Consensus size: 57
37132811 ATAGAAATAG
* * *
37132821 TGAAAATGGAGAAAAGGGAAACATTTTGAAATGATTATGGTTTTCTCCAAAATGAAAA
1 TGAAAATGGAGAAAA-GGAAACATTTGGAAATGAATACGGTTTTCTCCAAAATGAAAA
* * * * *
37132879 TGAAAATGGAGAAATA-GAATCATTTGGAAATGAATGCGGTTTTCTTCAAATTTAAAA
1 TGAAAATGGAGAAA-AGGAAACATTTGGAAATGAATACGGTTTTCTCCAAAATGAAAA
37132936 TGAAAATG
1 TGAAAATG
37132944 ACTTGGAAAT
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
57 41 0.73
58 14 0.25
59 1 0.02
ACGTcount: A:0.44, C:0.07, G:0.20, T:0.29
Consensus pattern (57 bp):
TGAAAATGGAGAAAAGGAAACATTTGGAAATGAATACGGTTTTCTCCAAAATGAAAA
Found at i:37133433 original size:17 final size:17
Alignment explanation
Indices: 37133407--37133440 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
37133397 TCCACTCATC
37133407 TTTTCTATTTCTTCTCCT
1 TTTTCTATTTCTT-TCCT
37133425 TTTTC-ATTTCTTTCCT
1 TTTTCTATTTCTTTCCT
37133441 CTTCTTTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 7 0.44
18 5 0.31
ACGTcount: A:0.06, C:0.26, G:0.00, T:0.68
Consensus pattern (17 bp):
TTTTCTATTTCTTTCCT
Found at i:37134242 original size:38 final size:38
Alignment explanation
Indices: 37134200--37134290 Score: 112
Period size: 38 Copynumber: 2.4 Consensus size: 38
37134190 TTGCATGTTT
* * *
37134200 AGCATGCCTACTATTACTGTTGAATTGAATTCAAGTTA
1 AGCATGTCTACTATTACTGTTGAACTGAATACAAGTTA
* **
37134238 AGCATGTCTA-TAGATACTGTTGAACTGAATACGTGTTA
1 AGCATGTCTACTA-TTACTGTTGAACTGAATACAAGTTA
37134276 AGCATGTCTACTATT
1 AGCATGTCTACTATT
37134291 TCTATATGAT
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
37 2 0.05
38 40 0.91
39 2 0.05
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (38 bp):
AGCATGTCTACTATTACTGTTGAACTGAATACAAGTTA
Found at i:37136025 original size:19 final size:19
Alignment explanation
Indices: 37135998--37136035 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
37135988 TGATCTTTAT
*
37135998 GAATTATAATACTTTAAAA
1 GAATAATAATACTTTAAAA
37136017 GAATAATAATACTTTAAAA
1 GAATAATAATACTTTAAAA
37136036 TCTAATAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.34
Consensus pattern (19 bp):
GAATAATAATACTTTAAAA
Found at i:37136871 original size:24 final size:25
Alignment explanation
Indices: 37136843--37136890 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
37136833 AATAAGATAG
*
37136843 TTATTTTAACTTTT-TATTTTTCTT
1 TTATTTTAAATTTTGTATTTTTCTT
*
37136867 TTATTTTAAATTTTGTTTTTTTCT
1 TTATTTTAAATTTTGTATTTTTCT
37136891 CTCTCCCTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 13 0.62
25 8 0.38
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (25 bp):
TTATTTTAAATTTTGTATTTTTCTT
Found at i:37139391 original size:34 final size:35
Alignment explanation
Indices: 37139347--37139413 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
37139337 CAGTAAAATA
* * *
37139347 TTTTCCGTAAAATGA-TTTCTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGACTTACAGGAAAATATTTTAC
*
37139381 TTTTCTGTAAAATGACTTACAGGAAAATATTTT
1 TTTTCCGTAAAATGACTTACAGGAAAATATTTT
37139414 CTGGTGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 14 0.50
35 14 0.50
ACGTcount: A:0.33, C:0.10, G:0.13, T:0.43
Consensus pattern (35 bp):
TTTTCCGTAAAATGACTTACAGGAAAATATTTTAC
Found at i:37139400 original size:20 final size:20
Alignment explanation
Indices: 37139362--37139400 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
37139352 CGTAAAATGA
**
37139362 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGACTTACT
*
37139382 TTTCTGTAAAATGACTTAC
1 TTTCTGGAAAATGACTTAC
37139401 AGGAAAATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (20 bp):
TTTCTGGAAAATGACTTACT
Found at i:37169691 original size:23 final size:23
Alignment explanation
Indices: 37169647--37169692 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 23
37169637 AAACCAATCT
*
37169647 AATTCGGTTAATCGGTCTATTAAC
1 AATTCGGTTAA-CGGTCAATTAAC
37169671 AATTCGGTTAGA-GGTCAATTAA
1 AATTCGGTTA-ACGGTCAATTAA
37169693 TGATTTTTTG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 9 0.45
24 10 0.50
25 1 0.05
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.35
Consensus pattern (23 bp):
AATTCGGTTAACGGTCAATTAAC
Found at i:37169920 original size:31 final size:31
Alignment explanation
Indices: 37169882--37169946 Score: 121
Period size: 31 Copynumber: 2.1 Consensus size: 31
37169872 AAAAAATAAA
37169882 AACATATAAATATTGGTTAATTCAATTAACC
1 AACATATAAATATTGGTTAATTCAATTAACC
*
37169913 AACATATAAATGTTGGTTAATTCAATTAACC
1 AACATATAAATATTGGTTAATTCAATTAACC
37169944 AAC
1 AAC
37169947 CAAATTAATC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.45, C:0.14, G:0.08, T:0.34
Consensus pattern (31 bp):
AACATATAAATATTGGTTAATTCAATTAACC
Found at i:37173195 original size:33 final size:32
Alignment explanation
Indices: 37173158--37173220 Score: 101
Period size: 33 Copynumber: 1.9 Consensus size: 32
37173148 TGTTACTGTC
37173158 ACTGTAATGGGCTAAGG-CTACACTGATACTGAT
1 ACTGTAATGGGCTAAGGCCTA-ACTGA-ACTGAT
37173191 ACTGTAATGGGCTAAGGCCTAACTGAACTG
1 ACTGTAATGGGCTAAGGCCTAACTGAACTG
37173221 TTATTGAATT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
32 4 0.14
33 22 0.76
34 3 0.10
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.25
Consensus pattern (32 bp):
ACTGTAATGGGCTAAGGCCTAACTGAACTGAT
Found at i:37177563 original size:4 final size:4
Alignment explanation
Indices: 37177554--37177578 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
37177544 AACTTGAGCC
37177554 TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA T
37177579 GTACAAGCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:37182622 original size:28 final size:28
Alignment explanation
Indices: 37182590--37182652 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
37182580 AAACTCATAA
*
37182590 TAAGTGTTGAGCTACCT-CAAATGAACAG
1 TAAGTGGTGAGCT-CCTGCAAATGAACAG
* *
37182618 TAAGTGGTGAGCTCTTGCAAATGAATAG
1 TAAGTGGTGAGCTCCTGCAAATGAACAG
37182646 TAAGTGG
1 TAAGTGG
37182653 CAAGCTTATT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
27 2 0.06
28 29 0.94
ACGTcount: A:0.33, C:0.13, G:0.27, T:0.27
Consensus pattern (28 bp):
TAAGTGGTGAGCTCCTGCAAATGAACAG
Found at i:37182814 original size:13 final size:13
Alignment explanation
Indices: 37182796--37182830 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
37182786 TGTGCAAGTT
*
37182796 ATGTTTTCATATC
1 ATGTTTTCAGATC
37182809 ATGTTTTCAGATC
1 ATGTTTTCAGATC
37182822 ATGTTTTCA
1 ATGTTTTCA
37182831 ATATTTTTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.23, C:0.14, G:0.11, T:0.51
Consensus pattern (13 bp):
ATGTTTTCAGATC
Found at i:37183005 original size:13 final size:15
Alignment explanation
Indices: 37182981--37183014 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
37182971 TTTAATTTTC
37182981 AAAATTTCAAAAA-A
1 AAAATTTCAAAAATA
37182995 AAAATTT-AAAAATA
1 AAAATTTCAAAAATA
37183009 AAAATT
1 AAAATT
37183015 GCATTTTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.26
14 14 0.74
ACGTcount: A:0.71, C:0.03, G:0.00, T:0.26
Consensus pattern (15 bp):
AAAATTTCAAAAATA
Found at i:37183044 original size:30 final size:31
Alignment explanation
Indices: 37183010--37183111 Score: 122
Period size: 30 Copynumber: 3.4 Consensus size: 31
37183000 TTAAAAATAA
* *
37183010 AAATTGCATTTTGACCCCTAAAATTTTC-CT
1 AAATTTCATTTTGACCCCTAAAACTTTCTCT
* *
37183040 AAATTTCATTTTGA-CCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCCTAAAACTTTCTCT
*
37183070 AAATTTCATTTAGACCCCT-AAACTTTCAT-T
1 AAATTTCATTTTGACCCCTAAAACTTTC-TCT
37183100 AAATTTCATTTT
1 AAATTTCATTTT
37183112 AATCCTAAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
29 11 0.17
30 47 0.75
31 5 0.08
ACGTcount: A:0.30, C:0.21, G:0.04, T:0.45
Consensus pattern (31 bp):
AAATTTCATTTTGACCCCTAAAACTTTCTCT
Found at i:37183086 original size:60 final size:59
Alignment explanation
Indices: 37183007--37183145 Score: 156
Period size: 60 Copynumber: 2.4 Consensus size: 59
37182997 AATTTAAAAA
* * * *
37183007 TAAAAATTGCATTTTGACCCCTAAAATTTTC-CTAAATTTCATTTTGACCCTTAAACTTTC
1 TAAAAATTACATTTAGACCCCT-AAACTTTCACTAAATTTCATTTTAACCC-TAAACTTTC
** * * * *
37183067 TTTAAATTTCATTTAGACCCCTAAACTTTCATTAAATTTCATTTTAATCCTAAATTTTC
1 TAAAAATTACATTTAGACCCCTAAACTTTCACTAAATTTCATTTTAACCCTAAACTTTC
37183126 TAAAAATTACATTTAG-CCCC
1 TAAAAATTACATTTAGACCCC
37183146 AGAAGTTTTG
Statistics
Matches: 66, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
58 4 0.06
59 28 0.42
60 34 0.52
ACGTcount: A:0.33, C:0.21, G:0.04, T:0.42
Consensus pattern (59 bp):
TAAAAATTACATTTAGACCCCTAAACTTTCACTAAATTTCATTTTAACCCTAAACTTTC
Found at i:37183749 original size:23 final size:22
Alignment explanation
Indices: 37183715--37183758 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
37183705 TCGCGTTTCG
37183715 AAATTTTCGTGTCTTCAAAAAA
1 AAATTTTCGTGTCTTCAAAAAA
*
37183737 AAATTTCTCGTGTTTTCAAAAA
1 AAATTT-TCGTGTCTTCAAAAA
37183759 TAAGGTAACG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (22 bp):
AAATTTTCGTGTCTTCAAAAAA
Found at i:37183757 original size:21 final size:21
Alignment explanation
Indices: 37183715--37183758 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
37183705 TCGCGTTTCG
37183715 AAATTTTCGTGTCTTCAAAAAA
1 AAATTTTCGTGTCTTC-AAAAA
*
37183737 AAATTTCTCGTGTTTTCAAAAA
1 AAATTT-TCGTGTCTTCAAAAA
37183759 TAAGGTAACG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (21 bp):
AAATTTTCGTGTCTTCAAAAA
Found at i:37183886 original size:18 final size:18
Alignment explanation
Indices: 37183863--37183932 Score: 97
Period size: 18 Copynumber: 3.9 Consensus size: 18
37183853 GAAAAATCAG
37183863 AAAAATTTTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
37183881 AAAAATTTTCGTGTTTTC
1 AAAAATTTTCGTGTTTTC
* * *
37183899 AAAAAATTCCAT-TTTTC
1 AAAAATTTTCGTGTTTTC
*
37183916 AAAATTTTTCGTGTTTT
1 AAAAATTTTCGTGTTTT
37183933 TTTTCAAAAA
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
17 13 0.30
18 31 0.70
ACGTcount: A:0.30, C:0.11, G:0.09, T:0.50
Consensus pattern (18 bp):
AAAAATTTTCGTGTTTTC
Found at i:37184034 original size:17 final size:16
Alignment explanation
Indices: 37184007--37184050 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 16
37183997 TTTTTATTTT
*
37184007 TTTCAACAATTCTCGTG
1 TTTCAA-AATTCTCGTA
37184024 TTTCACAAATTCTCGTA
1 TTTCA-AAATTCTCGTA
37184041 TTTCAAAATT
1 TTTCAAAATT
37184051 TTTTATGTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 5 0.20
17 19 0.76
18 1 0.04
ACGTcount: A:0.30, C:0.20, G:0.07, T:0.43
Consensus pattern (16 bp):
TTTCAAAATTCTCGTA
Found at i:37184097 original size:16 final size:16
Alignment explanation
Indices: 37184069--37184190 Score: 59
Period size: 17 Copynumber: 7.1 Consensus size: 16
37184059 TTTAAAAAAT
37184069 AAATTTCTCGTGTTTCA
1 AAATTT-TCGTGTTTCA
*
37184086 AAATTTTCGTGTTTTTTTAAA
1 AAATTTTCGTG----TTT-CA
**
37184107 AAAAATTCGTGTTTCTA
1 AAATTTTCGTGTTTC-A
* *
37184124 AAATTCTT-GTATTTTA
1 AAATT-TTCGTGTTTCA
37184140 AAATATTTCGTGTTTCGAA
1 AAAT-TTTCGTGTTTC--A
**
37184159 AAAAGTT-GTGTTTCA
1 AAATTTTCGTGTTTCA
*
37184174 AAATTCTCGTGTTTCA
1 AAATTTTCGTGTTTCA
37184190 A
1 A
37184191 TTGGATCACG
Statistics
Matches: 78, Mismatches: 15, Indels: 25
0.66 0.13 0.21
Matches are distributed among these distances:
15 5 0.06
16 21 0.27
17 31 0.40
18 4 0.05
19 4 0.05
20 3 0.04
21 10 0.13
ACGTcount: A:0.30, C:0.11, G:0.12, T:0.47
Consensus pattern (16 bp):
AAATTTTCGTGTTTCA
Found at i:37184113 original size:40 final size:39
Alignment explanation
Indices: 37184030--37184142 Score: 110
Period size: 40 Copynumber: 2.9 Consensus size: 39
37184020 CGTGTTTCAC
* *
37184030 AAATTCTCGTATTTCAAAATTTTTTATGTTTTAAAAAAT
1 AAATTCTCGTGTTTCAAAATTTTGTATGTTTTAAAAAAT
* * *
37184069 AAATTTCTCGTGTTTCAAAATTTTCGTGTTTTTTTAAAAA-
1 AAA-TTCTCGTGTTTCAAAATTTT-GTATGTTTTAAAAAAT
37184109 AAA-T-TCGTGTTTCTAAAATTCTTGTA--TTTTAAAA
1 AAATTCTCGTGTTTC-AAAATT-TTGTATGTTTTAAAA
37184143 TATTTCGTGT
Statistics
Matches: 63, Mismatches: 7, Indels: 11
0.78 0.09 0.14
Matches are distributed among these distances:
36 7 0.11
37 9 0.14
38 9 0.14
39 5 0.08
40 22 0.35
41 11 0.17
ACGTcount: A:0.35, C:0.09, G:0.08, T:0.49
Consensus pattern (39 bp):
AAATTCTCGTGTTTCAAAATTTTGTATGTTTTAAAAAAT
Found at i:37184177 original size:34 final size:33
Alignment explanation
Indices: 37184112--37184188 Score: 82
Period size: 34 Copynumber: 2.3 Consensus size: 33
37184102 TTAAAAAAAA
* ** *
37184112 TTCGTGTTTCTAAAATTCTTGTATTTTAAAATAT
1 TTCGTGTTTCGAAAAAACTTGTATTTCAAAAT-T
* *
37184146 TTCGTGTTTCGAAAAAAGTTGTGTTTCAAAATT
1 TTCGTGTTTCGAAAAAACTTGTATTTCAAAATT
*
37184179 CTCGTGTTTC
1 TTCGTGTTTC
37184189 AATTGGATCA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
33 10 0.28
34 26 0.72
ACGTcount: A:0.26, C:0.12, G:0.14, T:0.48
Consensus pattern (33 bp):
TTCGTGTTTCGAAAAAACTTGTATTTCAAAATT
Found at i:37196404 original size:192 final size:191
Alignment explanation
Indices: 37195877--37197054 Score: 2099
Period size: 192 Copynumber: 6.2 Consensus size: 191
37195867 CTTTCCAAGG
37195877 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
*
37195942 TTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
66 TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCCGAGGTATTTTTAG
37196007 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
130 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
37196069 AAAATCAACTCATATTGCGAG-AATGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTT--A--TT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
* * *
37196128 TTAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGCACGCCGAGGTATTTTCAGT
66 TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCCGAGGTATTTTTAGT
37196193 TTATGTTTTAAATTGACTCATATTGCGAGAGGTTGAGTTAAGCCTTTTAATTTTTGTTTTTC
131 TTATGTTTTAAATTGACTCATATTGCGAGAGG-TGAGTTAAGCCTTTTAATTTTTGTTTTTC
37196255 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAA-TTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
** * *
37196319 AAAAAAAAATCAACTCATATTGCGAGAAGGTGAGTTGAGCCTCAGGCACGCCGAGGTATGTTTAG
66 TTAAAAAAATCAACTCATATTGCGAGAA-GTGAGTTGAGCCTCGGGCACGCCGAGGTATTTTTAG
*
37196384 TTTATGTTTTAAATTGACTCATATTGCGAGAGTTGAGTTAAGCCTTTTCAATTTTTGTTTTTC
130 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTT-AATTTTTGTTTTTC
37196447 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
37196512 TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
66 TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTC-GGGCACGCCGAGGTATTTTTAG
37196577 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
130 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
37196639 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAA--TT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
37196702 TTAAAAAAATCAACTCATATTGCGA-AA-TGAGTTGAGCCTCGGGCACGCCGAGGTATTTTTAGT
66 TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCCGAGGTATTTTTAGT
37196765 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
131 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
37196826 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
* *
37196891 TAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCGGGCACGCCGAGGTATTTTTAGT
66 TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCCGAGGTATTTTTAGT
37196956 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
131 TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
* **
37197017 AAAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC
1 -AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
37197055 GGCTCACATG
Statistics
Matches: 952, Mismatches: 19, Indels: 30
0.95 0.02 0.03
Matches are distributed among these distances:
185 53 0.06
186 92 0.10
187 176 0.18
188 18 0.02
189 28 0.03
190 34 0.04
191 171 0.18
192 284 0.30
193 96 0.10
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.35
Consensus pattern (191 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGCACGCCGAGGTATTTTTAGT
TTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:37196924 original size:123 final size:119
Alignment explanation
Indices: 37196707--37196931 Score: 270
Period size: 123 Copynumber: 1.9 Consensus size: 119
37196697 AAATTTTAAA
* * * ***
37196707 AAAATCAACTCATATTGCGAAATGAGTTGAGCCTCGGGCACGCCGAGGTATTTTTAGTTTATGTT
1 AAAATCAACTCATATTGCGAAATGAGTTGAGCCTCAGACACGCCGAGGTATTTTTAATTTATAAA
** ** **
37196772 TTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTC
66 AAAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTTTTAATTTTTGTTTTTC
** *
37196826 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGC--GAAATGAGTTGAGCCTC-AGACACGCCGAGGTATTTTT-AATTTA
*
37196891 TAAAAAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCT
62 TAAAAAAAATCAACTCATATTGCGAGAAATGAGTTAAGCCT
37196932 CGGGCACGCC
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
119 18 0.21
121 17 0.20
122 16 0.19
123 35 0.41
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (119 bp):
AAAATCAACTCATATTGCGAAATGAGTTGAGCCTCAGACACGCCGAGGTATTTTTAATTTATAAA
AAAAATCAACTCATATTGCGAGAAATGAGTTAAGCCTTTTAATTTTTGTTTTTC
Found at i:37197009 original size:570 final size:570
Alignment explanation
Indices: 37195877--37197054 Score: 2168
Period size: 571 Copynumber: 2.1 Consensus size: 570
37195867 CTTTCCAAGG
37195877 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
*
37195942 TTTAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
66 TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
37196007 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
37196072 ATCAACTCATATTGCGAGAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTATTTTAAAAAAA
196 ATCAACTCATATTGCGAGAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTATTTTAAAAAAA
37196137 TCAACTCATATTGCGAGAAATGAGTTGAGCCTCAGGCACGCCGAGGTATTTTCAGTTTATGTTTT
261 TCAACTCATATTGC-AGAAATGAGTTGAGCCTCAGGCACGCCGAGGTATTTTCAGTTTATGTTTT
37196202 AAATTGACTCATATTGCGAGAGGTTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCA
325 AAATTGACTCATATTGCGAGAGGTTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCA
37196267 TATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTAAAAAAAAATCAA
390 TATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTAAAAAAAAATCAA
*
37196332 CTCATATTGCGAGAAGGTGAGTTGAGCCTCAGGCACGCCGAGGTATGTTTAGTTTATGTTTTAAA
455 CTCATATTGCGAGAAGATGAGTTGAGCCTCAGGCACGCCGAGGTATGTTTAGTTTATGTTTTAAA
*
37196397 TTGACTCATATTGCGAGAGTTGAGTTAAGCCTTTTCAATTTTTGTTTTTC-
520 TTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTCAATTTTTGTTTTTCA
37196447 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
37196512 TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
66 TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
37196577 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
131 TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
37196642 ATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTAAA
196 ATCAACTCATATTGCGAG-AATGAGTTGAGCCTCAAGACACGTTGAGGTA-TTTT--ATTTTAAA
* *
37196707 AAAATCAACTCATATTGC-GAAATGAGTTGAGCCTCGGGCACGCCGAGGTATTTTTAGTTTATGT
257 AAAATCAACTCATATTGCAGAAATGAGTTGAGCCTCAGGCACGCCGAGGTATTTTCAGTTTATGT
37196771 TTTAAATTGACTCATATTGCGAGAGG-TGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAAC
322 TTTAAATTGACTCATATTGCGAGAGGTTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAAC
*
37196835 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTTTAAAAAAAA
387 TCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAA-TTTAAAAAAAAA
* *
37196900 TCAACTCATATTGCGAGAA-ATGAGTTGAGCCTCGGGCACGCCGAGGTATTTTTAGTTTATGTTT
451 TCAACTCATATTGCGAGAAGATGAGTTGAGCCTCAGGCACGCCGAGGTATGTTTAGTTTATGTTT
37196964 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTT-AATTTTTGTTTTTCA
516 TAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTCAATTTTTGTTTTTCA
* **
37197018 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC
1 AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTC
37197055 GGCTCACATG
Statistics
Matches: 591, Mismatches: 11, Indels: 11
0.96 0.02 0.02
Matches are distributed among these distances:
570 226 0.38
571 235 0.40
572 104 0.18
574 26 0.04
ACGTcount: A:0.30, C:0.14, G:0.20, T:0.35
Consensus pattern (570 bp):
AAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTT
TTAAAAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGCCGAGGTATTTTTAG
TTTATGTTTTAAATTGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAA
ATCAACTCATATTGCGAGAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTATTTTAAAAAAA
TCAACTCATATTGCAGAAATGAGTTGAGCCTCAGGCACGCCGAGGTATTTTCAGTTTATGTTTTA
AATTGACTCATATTGCGAGAGGTTGAGTTAAGCCTTTTAATTTTTGTTTTTCAAAATCAACTCAT
ATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTATTTTTAAATTTAAAAAAAAATCAAC
TCATATTGCGAGAAGATGAGTTGAGCCTCAGGCACGCCGAGGTATGTTTAGTTTATGTTTTAAAT
TGACTCATATTGCGAGAGGTGAGTTAAGCCTTTTCAATTTTTGTTTTTCA
Found at i:37197260 original size:87 final size:89
Alignment explanation
Indices: 37197018--37197261 Score: 286
Period size: 91 Copynumber: 2.8 Consensus size: 89
37197008 TTGTTTTTCA
* *
37197018 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGC-CACACGCTGAGGTATTTTCAAAT
* * **
37197082 TATGTTTTTTTCAATCTATGCTTCTC
65 TCTGCTTTACTCAATCTA-GCTTCTC
* * *
37197108 AAAAATCAACTTATATTACGAGAGGTGAGTTGAGCCTCAAGG---CACGCTGAGGTATTTTCAAA
1 -AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-AGGCCACACGCTGAGGTATTTTCAAA
*
37197170 TTCTGCTTTACT-AATTCTA-CTTTTC
64 TTCTGCTTTACTCAA-TCTAGCTTCTC
* *
37197195 -AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTCAAATT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTCAAATT
37197259 CTG
66 CTG
37197262 TTTTTAATTT
Statistics
Matches: 132, Mismatches: 15, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
84 3 0.02
85 32 0.24
87 29 0.22
88 2 0.02
89 30 0.23
91 34 0.26
93 2 0.02
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.34
Consensus pattern (89 bp):
AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTCAAATT
CTGCTTTACTCAATCTAGCTTCTC
Found at i:37197270 original size:85 final size:88
Alignment explanation
Indices: 37197018--37197270 Score: 288
Period size: 85 Copynumber: 2.9 Consensus size: 88
37197008 TTGTTTTTCA
* *
37197018 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTTTCAATT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGC-CACACGCTGAGGTATTTTCAAAT
*
37197082 TATGTTTTTTTCAA-TCTATGCTTCTC
65 TCTG-TTTTTT-AATTCTA-GCTTCTC
* * *
37197108 AAAAATCAACTTATATTACGAGAGGTGAGTTGAGCCTCAAGG---CACGCTGAGGTATTTTCAAA
1 -AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTC-AGGCCACACGCTGAGGTATTTTCAAA
** *
37197170 TTCTGCTTTACTAATTCTA-CTTTTC
64 TTCTG-TTTTTTAATTCTAGCTTCTC
* *
37197195 -AAATCAACTCATATTGCAAGAGGTGAGTTGAGTCTCAGGCCACACGCTGAGGTCTTTTCAAATT
1 AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTCAAATT
37197259 CTG-TTTTTAATT
66 CTGTTTTTTAATT
37197271 TCTGTTTTTT
Statistics
Matches: 139, Mismatches: 17, Indels: 18
0.80 0.10 0.10
Matches are distributed among these distances:
84 3 0.02
85 39 0.28
87 29 0.21
88 2 0.01
89 30 0.22
91 34 0.24
93 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.36
Consensus pattern (88 bp):
AAAATCAACTCATATTGCAAGAGGTGAGTTGAGCCTCAGGCCACACGCTGAGGTATTTTCAAATT
CTGTTTTTTAATTCTAGCTTCTC
Found at i:37197273 original size:13 final size:13
Alignment explanation
Indices: 37197257--37197290 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 13
37197247 TCTTTTCAAA
37197257 TTCTGTTTTTAAT
1 TTCTGTTTTTAAT
37197270 TTCTGTTTTTTTAAT
1 TTCTG--TTTTTAAT
37197285 TTCTGT
1 TTCTGT
37197291 GTTTCAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 6 0.32
15 13 0.68
ACGTcount: A:0.12, C:0.09, G:0.09, T:0.71
Consensus pattern (13 bp):
TTCTGTTTTTAAT
Found at i:37197282 original size:15 final size:15
Alignment explanation
Indices: 37197262--37197290 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
37197252 TCAAATTCTG
37197262 TTTTTAATTTCTGTT
1 TTTTTAATTTCTGTT
37197277 TTTTTAATTTCTGT
1 TTTTTAATTTCTGT
37197291 GTTTCAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.72
Consensus pattern (15 bp):
TTTTTAATTTCTGTT
Found at i:37197463 original size:54 final size:55
Alignment explanation
Indices: 37197379--37197596 Score: 315
Period size: 54 Copynumber: 4.1 Consensus size: 55
37197369 TCAATTTCTA
*
37197379 CTTTTCAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
37197434 CTTTT-AATTTCTATTTTTCAAAAACCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
37197488 C--TT---TTTCTATTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
1 CTTTTCAATTTCTATTTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
* * * *
37197539 CTTTTTCAAATTCT-GTTTTCAAAAATCAACTCATATTGCGATAAGTGAGTTGAGC
1 C-TTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
37197594 CTT
1 CTT
37197597 GGCTCACGTG
Statistics
Matches: 149, Mismatches: 7, Indels: 15
0.87 0.04 0.09
Matches are distributed among these distances:
50 12 0.08
51 35 0.23
52 2 0.01
54 52 0.35
55 39 0.26
56 5 0.03
57 4 0.03
ACGTcount: A:0.29, C:0.17, G:0.17, T:0.38
Consensus pattern (55 bp):
CTTTTCAATTTCTATTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
Found at i:37197872 original size:6 final size:7
Alignment explanation
Indices: 37197846--37197871 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
37197836 TCAAAATTTC
37197846 AAAAAAT
1 AAAAAAT
37197853 AAAAAAT
1 AAAAAAT
37197860 AAAAAAT
1 AAAAAAT
37197867 AAAAA
1 AAAAA
37197872 TTGCATTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (7 bp):
AAAAAAT
Found at i:37197903 original size:30 final size:31
Alignment explanation
Indices: 37197869--37197970 Score: 122
Period size: 30 Copynumber: 3.4 Consensus size: 31
37197859 TAAAAAATAA
* *
37197869 AAATTGCATTTTGACCCCTAAAATTTTC-CT
1 AAATTTCATTTTGACCCCTAAAACTTTCTCT
* *
37197899 AAATTTCATTTTGA-CCCTTAAACTTTCTTT
1 AAATTTCATTTTGACCCCTAAAACTTTCTCT
*
37197929 AAATTTCATTTAGACCCCT-AAACTTTCAT-T
1 AAATTTCATTTTGACCCCTAAAACTTTC-TCT
37197959 AAATTTCATTTT
1 AAATTTCATTTT
37197971 AATCCTAAAT
Statistics
Matches: 63, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
29 11 0.17
30 47 0.75
31 5 0.08
ACGTcount: A:0.30, C:0.21, G:0.04, T:0.45
Consensus pattern (31 bp):
AAATTTCATTTTGACCCCTAAAACTTTCTCT
Found at i:37198184 original size:11 final size:11
Alignment explanation
Indices: 37198168--37198216 Score: 52
Period size: 11 Copynumber: 4.7 Consensus size: 11
37198158 TTTAACCCAA
37198168 AAAAAAGGAAG
1 AAAAAAGGAAG
37198179 AAAAAAGAGAA-
1 AAAAAAG-GAAG
37198190 AAAAAA--AAG
1 AAAAAAGGAAG
*
37198199 AAAAAA-CAAG
1 AAAAAAGGAAG
37198209 AAAAAAGG
1 AAAAAAGG
37198217 GGTTCAATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
8 2 0.06
9 6 0.18
10 9 0.27
11 13 0.39
12 3 0.09
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (11 bp):
AAAAAAGGAAG
Found at i:37198193 original size:20 final size:21
Alignment explanation
Indices: 37198168--37198216 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
37198158 TTTAACCCAA
*
37198168 AAAAAAGGAAGAAAAAA-GAG
1 AAAAAAGGAAGAAAAAACAAG
**
37198188 AAAAAAAAAAGAAAAAACAAG
1 AAAAAAGGAAGAAAAAACAAG
37198209 AAAAAAGG
1 AAAAAAGG
37198217 GGTTCAATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.80, C:0.02, G:0.18, T:0.00
Consensus pattern (21 bp):
AAAAAAGGAAGAAAAAACAAG
Found at i:37198196 original size:23 final size:21
Alignment explanation
Indices: 37198166--37198214 Score: 62
Period size: 23 Copynumber: 2.2 Consensus size: 21
37198156 ATTTTAACCC
*
37198166 AAAAAAAAGGAAGAAAAAAGAGA
1 AAAAAAAAAGAA-AAAAAA-AGA
*
37198189 AAAAAAAAAGAAAAAACAAGA
1 AAAAAAAAAGAAAAAAAAAGA
37198210 AAAAA
1 AAAAA
37198215 GGGGTTCAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 8 0.33
22 5 0.21
23 11 0.46
ACGTcount: A:0.84, C:0.02, G:0.14, T:0.00
Consensus pattern (21 bp):
AAAAAAAAAGAAAAAAAAAGA
Found at i:37198387 original size:22 final size:22
Alignment explanation
Indices: 37198356--37198406 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
37198346 ATATTTTGGC
37198356 ATTTATATTTTTAATTTAATTTA
1 ATTTA-ATTTTTAATTTAATTTA
* *
37198379 ATTTAATTTTTATTTTATTTTA
1 ATTTAATTTTTAATTTAATTTA
*
37198401 TTTTAA
1 ATTTAA
37198407 ATACTTTGAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
22 20 0.80
23 5 0.20
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (22 bp):
ATTTAATTTTTAATTTAATTTA
Found at i:37198388 original size:21 final size:21
Alignment explanation
Indices: 37198364--37198403 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
37198354 GCATTTATAT
37198364 TTTTAATTTAATTTAATTTAA
1 TTTTAATTTAATTTAATTTAA
* * *
37198385 TTTTTATTTTATTTTATTT
1 TTTTAATTTAATTTAATTT
37198404 TAAATACTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (21 bp):
TTTTAATTTAATTTAATTTAA
Found at i:37198398 original size:16 final size:16
Alignment explanation
Indices: 37198365--37198406 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
37198355 CATTTATATT
37198365 TTTAA-TTTAATTTAA
1 TTTAATTTTAATTTAA
* *
37198380 TTTAATTTTTATTTTA
1 TTTAATTTTAATTTAA
*
37198396 TTTTATTTTAA
1 TTTAATTTTAA
37198407 ATACTTTGAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 5 0.23
16 17 0.77
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (16 bp):
TTTAATTTTAATTTAA
Found at i:37198605 original size:23 final size:22
Alignment explanation
Indices: 37198571--37198614 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
37198561 TCGCGTTTCG
37198571 AAATTTTCGTGTCTTCAAAAAA
1 AAATTTTCGTGTCTTCAAAAAA
*
37198593 AAATTTCTCGTGTTTTCAAAAA
1 AAATTT-TCGTGTCTTCAAAAA
37198615 TAAGGTAACG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (22 bp):
AAATTTTCGTGTCTTCAAAAAA
Found at i:37198613 original size:21 final size:21
Alignment explanation
Indices: 37198571--37198614 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 21
37198561 TCGCGTTTCG
37198571 AAATTTTCGTGTCTTCAAAAAA
1 AAATTTTCGTGTCTTC-AAAAA
*
37198593 AAATTTCTCGTGTTTTCAAAAA
1 AAATTT-TCGTGTCTTCAAAAA
37198615 TAAGGTAACG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.39, C:0.14, G:0.09, T:0.39
Consensus pattern (21 bp):
AAATTTTCGTGTCTTCAAAAA
Found at i:37198758 original size:17 final size:18
Alignment explanation
Indices: 37198719--37198788 Score: 88
Period size: 18 Copynumber: 3.9 Consensus size: 18
37198709 GAAAAATCAA
37198719 AAAAAATTTCGTGTTTTC
1 AAAAAATTTCGTGTTTTC
*
37198737 AAAAAGTTTCGTGTTTTC
1 AAAAAATTTCGTGTTTTC
* *
37198755 AAAAAATTCCAT-TTTTC
1 AAAAAATTTCGTGTTTTC
**
37198772 AAAATTTTTCGTGTTTT
1 AAAAAATTTCGTGTTTT
37198789 TTTAAAAAAA
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
17 13 0.30
18 30 0.70
ACGTcount: A:0.31, C:0.11, G:0.10, T:0.47
Consensus pattern (18 bp):
AAAAAATTTCGTGTTTTC
Found at i:37198948 original size:16 final size:16
Alignment explanation
Indices: 37198927--37199043 Score: 67
Period size: 16 Copynumber: 6.9 Consensus size: 16
37198917 AAAAATAAAT
37198927 TTTTCGTGTTTCAAAA
1 TTTTCGTGTTTCAAAA
*
37198943 TTTTCGTGTTTTTTTAAAA
1 TTTTCGTG---TTTCAAAA
**
37198962 AATTCGTGTTTCTAAAA
1 TTTTCGTGTTTC-AAAA
* *
37198979 TTCTT-GTATTTTAAAA
1 TT-TTCGTGTTTCAAAA
37198995 TATTTCGTGTTTCGAAAAAA
1 T-TTTCGTGTTTC---AAAA
**
37199015 AGTT-GTGTTTCAAAA
1 TTTTCGTGTTTCAAAA
*
37199030 TTCTCGTGTTTCAA
1 TTTTCGTGTTTCAA
37199044 TTGGATCACG
Statistics
Matches: 75, Mismatches: 15, Indels: 22
0.67 0.13 0.20
Matches are distributed among these distances:
15 5 0.07
16 27 0.36
17 15 0.20
18 9 0.12
19 15 0.20
20 4 0.05
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (16 bp):
TTTTCGTGTTTCAAAA
Found at i:37199007 original size:34 final size:35
Alignment explanation
Indices: 37198923--37199012 Score: 96
Period size: 34 Copynumber: 2.6 Consensus size: 35
37198913 TTTAAAAAAT
* *
37198923 AAATTTTTCGTGTTTCAAAATTTTCGTGTTTTTTTA
1 AAATATTTCGTGTTTCAAAA-TTTCGTGTTATTTTA
* *
37198959 AAA-AATTCGTGTTTCTAAAA-TTCTTG-TATTTTA
1 AAATATTTCGTGTTTC-AAAATTTCGTGTTATTTTA
37198992 AAATATTTCGTGTTTCGAAAA
1 AAATATTTCGTGTTTC-AAAA
37199013 AAAGTTGTGT
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
33 9 0.20
34 20 0.43
35 10 0.22
36 7 0.15
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.50
Consensus pattern (35 bp):
AAATATTTCGTGTTTCAAAATTTCGTGTTATTTTA
Found at i:37199013 original size:92 final size:89
Alignment explanation
Indices: 37198842--37199040 Score: 208
Period size: 92 Copynumber: 2.2 Consensus size: 89
37198832 AATTTCGTAT
* * * * *
37198842 TTTCAAAATTTT-TTATTTTTTTCAACAATTCTCGTGTTTCACAAATTCTCGTATTTTAAAATTT
1 TTTCAAAATTTTCGTGTTTTTTTCAAAAAATCTCGTGTTTCACAAATTCTCGTATTTTAAAATAT
* * *
37198906 TTTATGTTTTAAAAAATAAATTTTTCGTG
66 TTCATG-TTTCAAAAA-AAA--GTT-GTG
*
37198935 TTTCAAAATTTTCGTGTTTTTTT-AAAAAAT-TCGTGTTTCTA-AAATTCTTGTATTTTAAAATA
1 TTTCAAAATTTTCGTGTTTTTTTCAAAAAATCTCGTGTTTC-ACAAATTCTCGTATTTTAAAATA
* *
37198997 TTTCGTGTTTCGAAAAAAAGTTGTG
65 TTTCATGTTTCAAAAAAAAGTTGTG
*
37199022 TTTCAAAATTCTCGTGTTT
1 TTTCAAAATTTTCGTGTTT
37199041 CAATTGGATC
Statistics
Matches: 92, Mismatches: 12, Indels: 10
0.81 0.11 0.09
Matches are distributed among these distances:
87 21 0.23
88 2 0.02
90 3 0.03
91 7 0.08
92 33 0.36
93 18 0.20
94 8 0.09
ACGTcount: A:0.30, C:0.10, G:0.10, T:0.51
Consensus pattern (89 bp):
TTTCAAAATTTTCGTGTTTTTTTCAAAAAATCTCGTGTTTCACAAATTCTCGTATTTTAAAATAT
TTCATGTTTCAAAAAAAAGTTGTG
Found at i:37202463 original size:13 final size:14
Alignment explanation
Indices: 37202445--37202473 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
37202435 TGCGTGCAAG
37202445 TTATGTTTT-CAAA
1 TTATGTTTTCCAAA
37202458 TTATGTTTTCCAAA
1 TTATGTTTTCCAAA
37202472 TT
1 TT
37202474 TTTTGGAGAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.28, C:0.10, G:0.07, T:0.55
Consensus pattern (14 bp):
TTATGTTTTCCAAA
Found at i:37205794 original size:13 final size:13
Alignment explanation
Indices: 37205772--37205810 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
37205762 GTAAATCTAG
37205772 CTACATATTTTAA
1 CTACATATTTTAA
*
37205785 CTACA-AATTTAA
1 CTACATATTTTAA
*
37205797 CTATATATTTTAA
1 CTACATATTTTAA
37205810 C
1 C
37205811 CTAACTTCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (13 bp):
CTACATATTTTAA
Found at i:37218856 original size:34 final size:34
Alignment explanation
Indices: 37218782--37218847 Score: 93
Period size: 33 Copynumber: 2.0 Consensus size: 34
37218772 ATATGTATAT
*
37218782 AAATATATATACATATGTATAATAATACGAAATA
1 AAATATATATACATATGTATAATAATACAAAATA
*
37218816 AAATATAT-TACGTATGTATAA-AATA-AAAATA
1 AAATATATATACATATGTATAATAATACAAAATA
37218847 A
1 A
37218848 TTTAATATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
31 6 0.20
32 4 0.13
33 12 0.40
34 8 0.27
ACGTcount: A:0.58, C:0.05, G:0.06, T:0.32
Consensus pattern (34 bp):
AAATATATATACATATGTATAATAATACAAAATA
Found at i:37220837 original size:100 final size:99
Alignment explanation
Indices: 37220727--37220941 Score: 223
Period size: 100 Copynumber: 2.2 Consensus size: 99
37220717 TGTGATATCG
* * * * * * * * *
37220727 GGGAAACGAGATTCGCTATTATAGCTTCAATTTGTTCCACTACACTGCTAGGGAAGTGAGATTTG
1 GGGAAGCGAGATTCGCGA-TATAGCTTCAATCTGTTCCACCACACCGCCAAGGAAGTAAGATTCG
* * *
37220792 CCGTTGTGGTTTTAATCTTTTTAACTACAATGTCA
65 CCGTTGTAGCTTTAATCATTTTAACTACAATGTCA
* * * * *
37220827 GGGAAGCGAGATTCACCGATGTGGCTTTAATCTGTTCCACCGCACCGCCAAGGAAGTAAGATTCG
1 GGGAAGCGAGATTC-GCGATATAGCTTCAATCTGTTCCACCACACCGCCAAGGAAGTAAGATTCG
* * *
37220892 CTGTTGTAGCTTTAATCATTTTAACTGCAATGTCG
65 CCGTTGTAGCTTTAATCATTTTAACTACAATGTCA
*
37220927 GGGAAGCAAGATTCG
1 GGGAAGCGAGATTCG
37220942 TTGTTGTGGC
Statistics
Matches: 92, Mismatches: 22, Indels: 3
0.79 0.19 0.03
Matches are distributed among these distances:
100 90 0.98
101 2 0.02
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (99 bp):
GGGAAGCGAGATTCGCGATATAGCTTCAATCTGTTCCACCACACCGCCAAGGAAGTAAGATTCGC
CGTTGTAGCTTTAATCATTTTAACTACAATGTCA
Done.