Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 121 of 173
Found at i:37220950 original size:100 final size:100
Alignment explanation
Indices: 37220778--37220989 Score: 253
Period size: 100 Copynumber: 2.1 Consensus size: 100
37220768 ACACTGCTAG
* * * * * *
37220778 GGAAGTGAGATTTGCCGTTGTGGTTTTAATCTTTTTAACTACAATGTCAGGGAAGCGAGATTCAC
1 GGAAGTAAGATTCGCCGTTGTAGCTTTAATCATTTTAACTACAATGTCAGGGAAGCAAGATTCAC
*
37220843 CGATGTGGCTTTAATCTGTTCCACCGCACCGCCAA
66 CGATGTGGCTTTAATCTATTCCACCGCACCGCCAA
* * * **
37220878 GGAAGTAAGATTCGCTGTTGTAGCTTTAATCATTTTAACTGCAATGTCGGGGAAGCAAGATTCGT
1 GGAAGTAAGATTCGCCGTTGTAGCTTTAATCATTTTAACTACAATGTCAGGGAAGCAAGATTCAC
* * * * ***
37220943 TGTTGTGGCTTTAATCTATTCCACTGCATCGCGTG
66 CGATGTGGCTTTAATCTATTCCACCGCACCGCCAA
37220978 GGAAGTAAGATT
1 GGAAGTAAGATT
37220990 TGAAATTCTT
Statistics
Matches: 93, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
100 93 1.00
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.33
Consensus pattern (100 bp):
GGAAGTAAGATTCGCCGTTGTAGCTTTAATCATTTTAACTACAATGTCAGGGAAGCAAGATTCAC
CGATGTGGCTTTAATCTATTCCACCGCACCGCCAA
Found at i:37220969 original size:50 final size:50
Alignment explanation
Indices: 37220776--37220970 Score: 149
Period size: 50 Copynumber: 3.9 Consensus size: 50
37220766 CTACACTGCT
** * * * * * *
37220776 AGGGAAGTGAGATTTGCCGTTGTGGTTTTAATCTTTTTAACTACAATGTC
1 AGGGAAGCAAGATTCGCTGTTGTGGCTTTAATCTATTCAACTGCAATGTC
* * * * * * * ** *
37220826 AGGGAAGCGAGATTCACCGATGTGGCTTTAATCTGTTCCACCGCACCGCC
1 AGGGAAGCAAGATTCGCTGTTGTGGCTTTAATCTATTCAACTGCAATGTC
* * * *
37220876 AAGGAAGTAAGATTCGCTGTTGTAGCTTTAATC-ATTTTAACTGCAATGTC
1 AGGGAAGCAAGATTCGCTGTTGTGGCTTTAATCTA-TTCAACTGCAATGTC
* * *
37220926 GGGGAAGCAAGATTCGTTGTTGTGGCTTTAATCTATTCCACTGCA
1 AGGGAAGCAAGATTCGCTGTTGTGGCTTTAATCTATTCAACTGCA
37220971 TCGCGTGGGA
Statistics
Matches: 109, Mismatches: 34, Indels: 4
0.74 0.23 0.03
Matches are distributed among these distances:
50 108 0.99
51 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (50 bp):
AGGGAAGCAAGATTCGCTGTTGTGGCTTTAATCTATTCAACTGCAATGTC
Found at i:37220981 original size:50 final size:49
Alignment explanation
Indices: 37220846--37220989 Score: 139
Period size: 50 Copynumber: 2.9 Consensus size: 49
37220836 GATTCACCGA
* * * **
37220846 TGTGGCTTTAATCTGTTCCACCGCACCGCCAAGGAAGTAAGATTCGCTGT
1 TGTGGCTTTAATCTATTCCACTGCATCG-CGGGGAAGTAAGATTCGCTGT
* ** * *
37220896 TGTAGCTTTAATC-ATTTTAACTGCAAT-GTCGGGGAAGCAAGATTCGTTGT
1 TGTGGCTTTAATCTA-TTCCACTGC-ATCG-CGGGGAAGTAAGATTCGCTGT
37220946 TGTGGCTTTAATCTATTCCACTGCATCGCGTGGGAAGTAAGATT
1 TGTGGCTTTAATCTATTCCACTGCATCGCG-GGGAAGTAAGATT
37220990 TGAAATTCTT
Statistics
Matches: 74, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
49 4 0.05
50 68 0.92
51 2 0.03
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (49 bp):
TGTGGCTTTAATCTATTCCACTGCATCGCGGGGAAGTAAGATTCGCTGT
Found at i:37221201 original size:44 final size:44
Alignment explanation
Indices: 37221086--37221209 Score: 158
Period size: 44 Copynumber: 2.8 Consensus size: 44
37221076 CCTTTATTTT
* * * *
37221086 AATCCGCTCCACTGTAATCTCAAGGAAATAGGATTACTGGCTTC
1 AATCTGCTCCACTGTAATCTCAAGGAGATAAGATTTCTGGCTTC
* *
37221130 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCAAGGAGATAAGATTTCTGGCTTC
* * * *
37221174 AATTTGCTCCACTGTAACCTCATGGAGATGAGATTT
1 AATCTGCTCCACTGTAATCTCAAGGAGATAAGATTT
37221210 GAAATTCTTC
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 69 1.00
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.31
Consensus pattern (44 bp):
AATCTGCTCCACTGTAATCTCAAGGAGATAAGATTTCTGGCTTC
Found at i:37221230 original size:19 final size:19
Alignment explanation
Indices: 37221206--37221246 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
37221196 TGGAGATGAG
37221206 ATTTGAAATTCTTCGGTCT
1 ATTTGAAATTCTTCGGTCT
37221225 ATTTGAAATTCTTCGGTCT
1 ATTTGAAATTCTTCGGTCT
37221244 ATT
1 ATT
37221247 CCCCTGTAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.22, C:0.15, G:0.15, T:0.49
Consensus pattern (19 bp):
ATTTGAAATTCTTCGGTCT
Found at i:37221516 original size:175 final size:175
Alignment explanation
Indices: 37221225--37221573 Score: 626
Period size: 175 Copynumber: 2.0 Consensus size: 175
37221215 TCTTCGGTCT
*
37221225 ATTTGAAATTCTTCGGTCTATTCCCCTGTAATCTCAAGGAGATAAGGCCTGATGCGATCTACTCT
1 ATTTGAAATTCTTCGGTCTATTCCCCTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCT
*
37221290 ACTGTAATTTCAGAGAGATAATATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAG
66 ACTGTAATTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAG
* * *
37221355 GATTACTGGCTTCAATCTGCTCCGCTATAATCTCAGGGGGATAAA
131 GATTACTGGCTTCAATCTACTCCGCTATAATCCCAGGGAGATAAA
* *
37221400 ATTTGAAATTTTTCGGTCTATTCCCCTGTAATCTCAGGGAGATAAGACCTGATGCGATCTACTCT
1 ATTTGAAATTCTTCGGTCTATTCCCCTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCT
37221465 ACTGTAATTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAG
66 ACTGTAATTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAG
*
37221530 GATTACTGGCTTCAATCTACTCCGCTGTAATCCCAGGGAGATAA
131 GATTACTGGCTTCAATCTACTCCGCTATAATCCCAGGGAGATAA
37221574 GATTCTTTAT
Statistics
Matches: 166, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
175 166 1.00
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.32
Consensus pattern (175 bp):
ATTTGAAATTCTTCGGTCTATTCCCCTGTAATCTCAAGGAGATAAGACCTGATGCGATCTACTCT
ACTGTAATTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAAATAG
GATTACTGGCTTCAATCTACTCCGCTATAATCCCAGGGAGATAAA
Found at i:37221558 original size:44 final size:44
Alignment explanation
Indices: 37221330--37221725 Score: 202
Period size: 44 Copynumber: 9.0 Consensus size: 44
37221320 TTTTAATCCG
* * *
37221330 CTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTG
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTA
* * * ** * ** **
37221374 CTCCGCTATAATCTCAGGGGGATAAAATTTGA-AATTTTTCGGTCTA
1 CTCCACTGTAATCTCAGGGAGATAGGA-TT-ACTA-GCTTCAATCTA
* * * * * * *
37221420 TTCCCCTGTAATCTCAGGGAGATAAGA--CCT-GATGCGATCTA
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTA
* * * * * * * **
37221461 CTCTACTGTAATTTCAGAGAGATAAGATCCT-TTA-TTTTAATCCG
1 CTCCACTGTAATCTCAGGGAGATAGGAT--TACTAGCTTCAATCTA
* *
37221505 CTCCACTGTAATCTCAGGGAAATAGGATTACTGGCTTCAATCTA
1 CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTA
* * * * * * *
37221549 CTCCGCTGTAATCCCAGGGAGATAAGATT-CTTTA-TTTTACTCTG
1 CTCCACTGTAATCTCAGGGAGATAGGATTAC--TAGCTTCAATCTA
*
37221593 CTCCGCTGTAATCTC-GGAGAGATAGGATTACTAGCTTCAATCTA
1 CTCCACTGTAATCTCAGG-GAGATAGGATTACTAGCTTCAATCTA
* * * *
37221637 CTCCACTGTAATCTCAGGGAGATAAGATCTGA-AATTCTTCGATCTA
1 CTCCACTGTAATCTCAGGGAGATAGGAT-T-ACTA-GCTTCAATCTA
* *
37221683 TTCCACTGTAATCTCAGGGTGATAGGATTA-TCAGCTTCAATCT
1 CTCCACTGTAATCTCAGGGAGATAGGATTACT-AGCTTCAATCT
37221726 GCTTTCTTAC
Statistics
Matches: 258, Mismatches: 73, Indels: 42
0.69 0.20 0.11
Matches are distributed among these distances:
41 29 0.11
42 1 0.00
43 6 0.02
44 148 0.57
45 10 0.04
46 64 0.25
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (44 bp):
CTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTA
Found at i:37221560 original size:88 final size:88
Alignment explanation
Indices: 37221281--37221665 Score: 390
Period size: 88 Copynumber: 4.4 Consensus size: 88
37221271 GCCTGATGCG
* * * *
37221281 ATCTACTCTACTGTAATTTCAGAGAGATAATATCCTTTATTTTAATCCGCTCCACTGTAATCTCA
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCA
37221346 GGGAAATAGGATTACTGGCTTCA
66 GGGAAATAGGATTACTGGCTTCA
* * * * * * * *
37221369 ATCTGCTCCGCTATAATCTCAGGGGGATAAAAT--TTGAAATTTT--TCGGTCTATTCCCCTGTA
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATCCTT--TATTTTAATCCG-C---TCCACTGTA
* * * * * *
37221430 ATCTCAGGGAGATAAGA--CCT-GATGCG
60 ATCTCAGGGAAATAGGATTACTGGCTTCA
* * *
37221456 ATCTACTCTACTGTAATTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCA
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCA
37221521 GGGAAATAGGATTACTGGCTTCA
66 GGGAAATAGGATTACTGGCTTCA
* * * * * *
37221544 ATCTACTCCGCTGTAATCCCAGGGAGATAAGATTCTTTATTTTACTCTGCTCCGCTGTAATCTC-
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCA
* *
37221608 GGAGAGATAGGATTACTAGCTTCA
66 GG-GAAATAGGATTACTGGCTTCA
37221632 ATCTACTCCACTGTAATCTCAGGGAGATAAGATC
1 ATCTACTCCACTGTAATCTCAGGGAGATAAGATC
37221666 TGAAATTCTT
Statistics
Matches: 235, Mismatches: 48, Indels: 28
0.76 0.15 0.09
Matches are distributed among these distances:
85 23 0.10
86 5 0.02
87 38 0.16
88 141 0.60
89 5 0.02
90 23 0.10
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (88 bp):
ATCTACTCCACTGTAATCTCAGGGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCA
GGGAAATAGGATTACTGGCTTCA
Found at i:37221873 original size:129 final size:129
Alignment explanation
Indices: 37221716--37221952 Score: 375
Period size: 129 Copynumber: 1.8 Consensus size: 129
37221706 AGGATTATCA
* * * *
37221716 GCTTCAATCTGCTTTCTTACACTTGAAGATAAGATTCACCGTTTTCGATCTGTTCCGCTACTGCT
1 GCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCACCGTCTTCGATCTGCTCCGCTACTGCT
*
37221781 TAGGGAGACAAGATTTGTAATTTCCCAACCTAATCCACTGCTGACTAGGGATATAGGACTTGTG
66 TAGGGAGACAAGATCTGTAATTTCCCAACCTAATCCACTGCTGACTAGGGATATAGGACTTGTG
* ** *
37221845 GCTTAAATCTGCTTCCTTACACTTGAAGATAATATTTGCCGTCTTCGATCTGCTCTGCTACTGCT
1 GCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCACCGTCTTCGATCTGCTCCGCTACTGCT
* *
37221910 TAGGGAGACATGATCTGTAATTTCCCAACCTATTCCACTGCTG
66 TAGGGAGACAAGATCTGTAATTTCCCAACCTAATCCACTGCTG
37221953 GTCAGGGAGC
Statistics
Matches: 97, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
129 97 1.00
ACGTcount: A:0.24, C:0.24, G:0.18, T:0.34
Consensus pattern (129 bp):
GCTTAAATCTGCTTCCTTACACTTGAAGATAAGATTCACCGTCTTCGATCTGCTCCGCTACTGCT
TAGGGAGACAAGATCTGTAATTTCCCAACCTAATCCACTGCTGACTAGGGATATAGGACTTGTG
Found at i:37224262 original size:56 final size:55
Alignment explanation
Indices: 37224200--37224323 Score: 158
Period size: 56 Copynumber: 2.2 Consensus size: 55
37224190 TTTCTTTTTC
* * *
37224200 ATTTTTTTTTCCTTCTCTCTTTTTTTCATTTTCATTTTCATTTTGACTTTGATTATG
1 ATTTTTTTTTTCTTCT-GCTTTTTTT-ATTTTAATTTTCATTTTGACTTTGATTATG
* * * *
37224257 ATTTTTCTTTTTCTTTTGCTTTTTTTATTTTAATTTTGATTTTGATTTTGATTTTG
1 ATTTTT-TTTTTCTTCTGCTTTTTTTATTTTAATTTTCATTTTGACTTTGATTATG
37224313 ATTTTTTTTTT
1 ATTTTTTTTTT
37224324 GTATTGCATC
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
55 5 0.08
56 32 0.54
57 14 0.24
58 8 0.14
ACGTcount: A:0.12, C:0.10, G:0.06, T:0.72
Consensus pattern (55 bp):
ATTTTTTTTTTCTTCTGCTTTTTTTATTTTAATTTTCATTTTGACTTTGATTATG
Found at i:37224287 original size:6 final size:6
Alignment explanation
Indices: 37224278--37224317 Score: 62
Period size: 6 Copynumber: 6.7 Consensus size: 6
37224268 TCTTTTGCTT
* *
37224278 TTTTTA TTTTAA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
1 TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTTGA TTTT
37224318 TTTTTTGTAT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 32 1.00
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.72
Consensus pattern (6 bp):
TTTTGA
Found at i:37224318 original size:50 final size:50
Alignment explanation
Indices: 37224228--37224324 Score: 131
Period size: 50 Copynumber: 1.9 Consensus size: 50
37224218 CTTTTTTTCA
* **
37224228 TTTTCATTTTCATTTTGACTTTGATTATGATTTTTCTTTTTCTTTTGCTT
1 TTTTCATTTTAATTTTGACTTTGATTATGATTTTGATTTTTCTTTTGCTT
* * * *
37224278 TTTTTATTTTAATTTTGATTTTGATTTTGATTTTGATTTTTTTTTTG
1 TTTTCATTTTAATTTTGACTTTGATTATGATTTTGATTTTTCTTTTG
37224325 TATTGCATCA
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
50 40 1.00
ACGTcount: A:0.13, C:0.06, G:0.09, T:0.71
Consensus pattern (50 bp):
TTTTCATTTTAATTTTGACTTTGATTATGATTTTGATTTTTCTTTTGCTT
Found at i:37224323 original size:18 final size:18
Alignment explanation
Indices: 37224247--37224324 Score: 68
Period size: 18 Copynumber: 4.2 Consensus size: 18
37224237 TCATTTTGAC
*
37224247 TTTGATTATGATTTTTCTT
1 TTTGATTTTGATTTTT-TT
* *
37224266 TTT-CTTTTGCTTTTTTTAT
1 TTTGATTTTG-ATTTTTT-T
* **
37224285 TTTAATTTTGATTTTGAT
1 TTTGATTTTGATTTTTTT
37224303 TTTGATTTTGATTTTTTT
1 TTTGATTTTGATTTTTTT
37224321 TTTG
1 TTTG
37224325 TATTGCATCA
Statistics
Matches: 46, Mismatches: 10, Indels: 7
0.73 0.16 0.11
Matches are distributed among these distances:
18 25 0.54
19 16 0.35
20 5 0.11
ACGTcount: A:0.13, C:0.04, G:0.10, T:0.73
Consensus pattern (18 bp):
TTTGATTTTGATTTTTTT
Found at i:37224324 original size:12 final size:12
Alignment explanation
Indices: 37224222--37224317 Score: 66
Period size: 12 Copynumber: 7.8 Consensus size: 12
37224212 TTCTCTCTTT
* *
37224222 TTTTCATTTTCA
1 TTTTGATTTTGA
*
37224234 TTTTCATTTTGA
1 TTTTGATTTTGA
* *
37224246 CTTTGATTATGA
1 TTTTGATTTTGA
** **
37224258 TTTTTCTTTTTC
1 TTTTGATTTTGA
* *
37224270 TTTTGCTTTTTTTA
1 TTTTG--ATTTTGA
*
37224284 TTTTAATTTTGA
1 TTTTGATTTTGA
37224296 TTTTGATTTTGA
1 TTTTGATTTTGA
37224308 TTTTGATTTT
1 TTTTGATTTT
37224318 TTTTTTGTAT
Statistics
Matches: 65, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
12 56 0.86
14 9 0.14
ACGTcount: A:0.15, C:0.07, G:0.08, T:0.70
Consensus pattern (12 bp):
TTTTGATTTTGA
Found at i:37232858 original size:41 final size:42
Alignment explanation
Indices: 37232813--37233007 Score: 106
Period size: 44 Copynumber: 4.6 Consensus size: 42
37232803 GGTCTATTCC
37232813 ACTGTAACCTCAGGGAGATAAGA-CCTGGTGCGATCTACTCT
1 ACTGTAACCTCAGGGAGATAAGATCCTGGTGCGATCTACTCT
** ** * ** *** ** *
37232854 ACTGTAATTTCAAAGAGATAAGATCATTTATTTTAATCCGCTCC
1 ACTGTAACCTCAGGGAGATAAGATC--CTGGTGCGATCTACTCT
* * * * * * *
37232898 ACTGTAATCTCTGGGAAATAGGATTACTGGCTTCGATCTGCTCT
1 ACTGTAACCTCAGGGAGATAAGA-TCCTGG-TGCGATCTACTCT
* *
37232942 GCTGTAACCTCAGGGAGATAAGA-CCTGATGCGATCTACTCT
1 ACTGTAACCTCAGGGAGATAAGATCCTGGTGCGATCTACTCT
* * **
37232983 ACTGCAACTTCAAAGAGATAAGATC
1 ACTGTAACCTCAGGGAGATAAGATC
37233008 TTTTATTTTA
Statistics
Matches: 107, Mismatches: 41, Indels: 11
0.67 0.26 0.07
Matches are distributed among these distances:
41 48 0.45
42 5 0.05
43 1 0.01
44 52 0.49
45 1 0.01
ACGTcount: A:0.30, C:0.22, G:0.20, T:0.29
Consensus pattern (42 bp):
ACTGTAACCTCAGGGAGATAAGATCCTGGTGCGATCTACTCT
Found at i:37233029 original size:129 final size:130
Alignment explanation
Indices: 37232814--37233051 Score: 399
Period size: 129 Copynumber: 1.8 Consensus size: 130
37232804 GTCTATTCCA
* * *
37232814 CTGTAACCTCAGGGAGATAAGACCTGGTGCGATCTACTCTACTGTAATTTCAAAGAGATAAGATC
1 CTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAAAGAGATAAGATC
*
37232879 ATTTATTTTAATCCGCTCCAC-TGTAA-TCTCTGGGAAATAGGATTACTGGCTTCGATCTGCTCT
66 ATTTATTTTAATCCGCTCCACTTGTAACT-TCAGGGAAATAGGATTACTGGCTTCGATCTGCTCT
37232942 G
130 G
37232943 CTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAAAGAGATAAGATC
1 CTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAAAGAGATAAGATC
* *
37233008 TTTTATTTTAATCCGCTCCACTTGTAACTTCAGGGAGATAGGAT
66 ATTTATTTTAATCCGCTCCACTTGTAACTTCAGGGAAATAGGAT
37233052 CTGTAATTTC
Statistics
Matches: 101, Mismatches: 6, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
129 82 0.81
130 18 0.18
131 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.31
Consensus pattern (130 bp):
CTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACTTCAAAGAGATAAGATC
ATTTATTTTAATCCGCTCCACTTGTAACTTCAGGGAAATAGGATTACTGGCTTCGATCTGCTCTG
Found at i:37233206 original size:127 final size:128
Alignment explanation
Indices: 37233039--37234104 Score: 1726
Period size: 127 Copynumber: 8.3 Consensus size: 128
37233029 TTGTAACTTC
* * *
37233039 AGGGAGATAGGATCTGTAATTTCCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTAGC
1 AGGGAGACAAGATCTGTAATTT-CCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGC
* *
37233104 TTAAATCTGCTTCCTTACACTTGAAGGTAAGATTCACCGTCTTCGATCTGCTCCGCTACTGCTT
65 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTT
37233168 AGGGAGACAAGATCTGTAA-TTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCT
1 AGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCT
* *
37233232 TAAATCTGCTTCCTTACACTTGAAGATAAGATTTGTCGTCTTCGATCTGCTCCGCTACTGCTT
66 TAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTT
* *
37233295 AAGGAGACAAGATCTGTAA-TTCCAACCTATTCCACTGCTGACCATGGATATAGGACTTGTGGCT
1 AGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCT
* * * *
37233359 TAAATCTGCTTCCTTACACTTGAAGATAAGATTTGCCATCTTCGATCTGCTCCGCTATTGCCT
66 TAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTT
* **
37233422 AGAGAGACAAGATCTGTAATTTCCCAACCTATTCCACTGCTGGTCAGGGATATAGGACTTGTGGC
1 AGGGAGACAAGATCTGTAATTT-CCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGC
* * *
37233487 TTAAATATGCTTCCTTACACTTGAAGATAAGATTTGCCGTCTTCGATCTGCTCCGCTATTGCTT
65 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTT
*
37233551 AGAGAGACAAGATCTGTAATTTCCAAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGC
1 AGGGAGACAAGATCTGTAATTTCC-AACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGC
*
37233616 TTAAATATGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTT
65 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTT
37233680 AGGGAGACAAGATCTGTAA-TTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCT
1 AGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCT
* *
37233744 TAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCATCTTTGATCTGCTCCGCTACTGCTT
66 TAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTT
* * *
37233807 AGGGAGACAAGATCTATAATTTCCCAACCTATTCCACTACTGACCGGGGATATAGGACTTGTGGC
1 AGGGAGACAAGATCTGTAATTT-CCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGC
* * * *
37233872 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGTTT
65 TTAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTT
* *
37233936 AGGGAGACAAGATCTGTAA-TTCCAACCTATTCCACTGCTGACCATGGATATAAGACTTGTGGCT
1 AGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCT
* * *
37234000 TAAATCTGCTTCCTTACACTTGAAGATAAGATTCGTCGTCTTTGATCTGCTCCGCTATTGCTT
66 TAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTT
* *
37234063 TGGGAGACAAGATCTGTAATTTCCCAACCTATTCAACTGCTG
1 AGGGAGACAAGATCTGTAATTT-CCAACCTATTCCACTGCTG
37234105 GTCAGGGAGC
Statistics
Matches: 880, Mismatches: 50, Indels: 14
0.93 0.05 0.01
Matches are distributed among these distances:
127 473 0.54
128 16 0.02
129 391 0.44
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (128 bp):
AGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCT
TAAATCTGCTTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTT
Found at i:37233515 original size:256 final size:256
Alignment explanation
Indices: 37233049--37234104 Score: 1740
Period size: 256 Copynumber: 4.1 Consensus size: 256
37233039 AGGGAGATAG
*
37233049 GATCTGTAATTTCCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTAGCTTAAATCTGC
1 GATCTGTAATTTCCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGC
* *
37233114 TTCCTTACACTTGAAGGTAAGATTCACCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAG
66 TTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAG
37233179 ATCTGTAATTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTC
131 ATCTGTAATTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTC
* *
37233244 CTTACACTTGAAGATAAGATTTGTCGTCTTCGATCTGCTCCGCTACTGCTTAAGGAGACAA
196 CTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAAGGAGACAA
*
37233305 GATCTGTAA-TT-CCAACCTATTCCACTGCTGACCATGGATATAGGACTTGTGGCTTAAATCTGC
1 GATCTGTAATTTCCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGC
* * * * *
37233368 TTCCTTACACTTGAAGATAAGATTTGCCATCTTCGATCTGCTCCGCTATTGCCTAGAGAGACAAG
66 TTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAG
** *
37233433 ATCTGTAATTTCCCAACCTATTCCACTGCTGGTCAGGGATATAGGACTTGTGGCTTAAATATGCT
131 ATCTGTAA-TT-CCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCT
* *
37233498 TCCTTACACTTGAAGATAAGATTTGCCGTCTTCGATCTGCTCCGCTATTGCTT-AGAGAGACAA
194 TCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAAG-GAGACAA
* *
37233561 GATCTGTAATTTCCAAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATATGC
1 GATCTGTAATTTCCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGC
37233626 TTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAG
66 TTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAG
37233691 ATCTGTAATTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTC
131 ATCTGTAATTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTC
* * *
37233756 CTTACACTTGAAGATAAGATTCGCCATCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAA
196 CTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAAGGAGACAA
* * *
37233817 GATCTATAATTTCCCAACCTATTCCACTACTGACCGGGGATATAGGACTTGTGGCTTAAATCTGC
1 GATCTGTAATTTCCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGC
* * * *
37233882 TTCCTTACACTTGAAGATAAGATTTGTCGTCTTCGATCTGCTCCACTACTGTTTAGGGAGACAAG
66 TTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAG
* *
37233947 ATCTGTAATTCCAACCTATTCCACTGCTGACCATGGATATAAGACTTGTGGCTTAAATCTGCTTC
131 ATCTGTAATTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTC
* * * **
37234012 CTTACACTTGAAGATAAGATTCGTCGTCTTTGATCTGCTCCGCTATTGCTTTGGGAGACAA
196 CTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAAGGAGACAA
*
37234073 GATCTGTAATTTCCCAACCTATTCAACTGCTG
1 GATCTGTAATTTCCCAACCTATTCCACTGCTG
37234105 GTCAGGGAGC
Statistics
Matches: 746, Mismatches: 48, Indels: 12
0.93 0.06 0.01
Matches are distributed among these distances:
254 116 0.16
255 6 0.01
256 502 0.67
257 5 0.01
258 117 0.16
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (256 bp):
GATCTGTAATTTCCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGC
TTCCTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAG
ATCTGTAATTCCAACCTATTCCACTGCTGACCAGGGATATAGGACTTGTGGCTTAAATCTGCTTC
CTTACACTTGAAGATAAGATTCGCCGTCTTCGATCTGCTCCGCTACTGCTTAAGGAGACAA
Found at i:37235106 original size:8 final size:8
Alignment explanation
Indices: 37235090--37235139 Score: 54
Period size: 8 Copynumber: 6.6 Consensus size: 8
37235080 AGCCTCTCCA
37235090 TTTTT-AT
1 TTTTTCAT
37235097 TTTTTCAT
1 TTTTTCAT
37235105 TTTTT-A-
1 TTTTTCAT
37235111 -TTTTCAT
1 TTTTTCAT
37235118 TTTTTCAT
1 TTTTTCAT
*
37235126 TCATTTCAT
1 T-TTTTCAT
37235135 TTTTT
1 TTTTT
37235140 TATTCCAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
5 4 0.11
6 1 0.03
7 6 0.17
8 18 0.50
9 7 0.19
ACGTcount: A:0.14, C:0.10, G:0.00, T:0.76
Consensus pattern (8 bp):
TTTTTCAT
Found at i:37235114 original size:13 final size:13
Alignment explanation
Indices: 37235088--37235122 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
37235078 TTAGCCTCTC
*
37235088 CATTTTTATTTTTT
1 CATTTTT-TATTTT
37235102 CATTTTTTATTTT
1 CATTTTTTATTTT
37235115 CATTTTTT
1 CATTTTTT
37235123 CATTCATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 13 0.65
14 7 0.35
ACGTcount: A:0.14, C:0.09, G:0.00, T:0.77
Consensus pattern (13 bp):
CATTTTTTATTTT
Found at i:37235134 original size:17 final size:17
Alignment explanation
Indices: 37235112--37235144 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37235102 CATTTTTTAT
37235112 TTTCATTTTTTCATTCA
1 TTTCATTTTTTCATTCA
*
37235129 TTTCATTTTTTTATTC
1 TTTCATTTTTTCATTC
37235145 CAAAATCACC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTCATTTTTTCATTCA
Found at i:37244192 original size:59 final size:59
Alignment explanation
Indices: 37244100--37244219 Score: 240
Period size: 59 Copynumber: 2.0 Consensus size: 59
37244090 CCACCATCAG
37244100 TAGGCCTTATCCCTCAACACTGACATAATATTGTTCAGTTTATGTTCTGGAGTAGAGTC
1 TAGGCCTTATCCCTCAACACTGACATAATATTGTTCAGTTTATGTTCTGGAGTAGAGTC
37244159 TAGGCCTTATCCCTCAACACTGACATAATATTGTTCAGTTTATGTTCTGGAGTAGAGTC
1 TAGGCCTTATCCCTCAACACTGACATAATATTGTTCAGTTTATGTTCTGGAGTAGAGTC
37244218 TA
1 TA
37244220 TGTCATCCAG
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (59 bp):
TAGGCCTTATCCCTCAACACTGACATAATATTGTTCAGTTTATGTTCTGGAGTAGAGTC
Found at i:37248067 original size:28 final size:28
Alignment explanation
Indices: 37248035--37248088 Score: 83
Period size: 28 Copynumber: 1.9 Consensus size: 28
37248025 AAATATATAA
37248035 TATATAAAT-TAATAAAAAAATTAAAATT
1 TATATAAATAT-ATAAAAAAATTAAAATT
*
37248063 TATATAAATATATAAAAGAATTAAAA
1 TATATAAATATATAAAAAAATTAAAA
37248089 ACTTGTCCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
28 23 0.96
29 1 0.04
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (28 bp):
TATATAAATATATAAAAAAATTAAAATT
Found at i:37255795 original size:29 final size:28
Alignment explanation
Indices: 37255758--37255840 Score: 85
Period size: 29 Copynumber: 2.9 Consensus size: 28
37255748 ACTCAATGTA
37255758 CAATATTATACATGAAGTTTGATTTTGTG
1 CAATATTATACATGAAGTTTGATTTT-TG
* * * **
37255787 CAATGTTATATACGAAGTTCAATTTTTG
1 CAATATTATACATGAAGTTTGATTTTTG
* *
37255815 CAATTTTATACATGAAATTTTGATTT
1 CAATATTATACATG-AAGTTTGATTT
37255841 GATTCAATTT
Statistics
Matches: 42, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
28 13 0.31
29 29 0.69
ACGTcount: A:0.33, C:0.08, G:0.13, T:0.46
Consensus pattern (28 bp):
CAATATTATACATGAAGTTTGATTTTTG
Found at i:37260447 original size:34 final size:34
Alignment explanation
Indices: 37260409--37260554 Score: 150
Period size: 34 Copynumber: 4.3 Consensus size: 34
37260399 AATTGATTGA
* * *
37260409 TTATAAGTATATTATTTGTTACCGTATCGATCTG
1 TTATAAGCATATTAATTGCTACCGTATCGATCTG
* * *
37260443 TTATAAGCATATTAATTACTACTGTA-CTGATTTG
1 TTATAAGCATATTAATTGCTACCGTATC-GATCTG
* * * *
37260477 TTATAAGCATATTAATTGCGATCGTATTGATCTA
1 TTATAAGCATATTAATTGCTACCGTATCGATCTG
* * *
37260511 TTATACGCATATAAATTGCTACCGTATTGATCTG
1 TTATAAGCATATTAATTGCTACCGTATCGATCTG
*
37260545 TAATAAGCAT
1 TTATAAGCAT
37260555 GTCATATTGC
Statistics
Matches: 90, Mismatches: 20, Indels: 4
0.79 0.18 0.04
Matches are distributed among these distances:
33 1 0.01
34 89 0.99
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.42
Consensus pattern (34 bp):
TTATAAGCATATTAATTGCTACCGTATCGATCTG
Found at i:37260717 original size:45 final size:44
Alignment explanation
Indices: 37260661--37260856 Score: 185
Period size: 45 Copynumber: 4.4 Consensus size: 44
37260651 TATCTGCAAA
* * * * *
37260661 TTTGGTGTGCATCCACAGCCAAAGGTAGATTCTATCTACGAGATT
1 TTTGTTGTGTATCCACAGCCAGAGATAAATTCTATCTACGAGA-T
* * *
37260706 TTTGTTGTGCATCCACAGCCAGAGGTAAATTCTATCTGCGAGAT
1 TTTGTTGTGTATCCACAGCCAGAGATAAATTCTATCTACGAGAT
* * * * * * *
37260750 TTTGTTGCGTATTCATAGCCAGAGACAAATTTTATTTGCGAGAT
1 TTTGTTGTGTATCCACAGCCAGAGATAAATTCTATCTACGAGAT
* * * * * *
37260794 TTTTTCTATGTACCCATAGCCAGAGATAGATTCTATCTACGGGAT
1 TTTGT-TGTGTATCCACAGCCAGAGATAAATTCTATCTACGAGAT
37260839 TTTGTTGTGTATCCACAG
1 TTTGTTGTGTATCCACAG
37260857 TCATTGGCAG
Statistics
Matches: 123, Mismatches: 27, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
44 51 0.41
45 72 0.59
ACGTcount: A:0.26, C:0.18, G:0.21, T:0.35
Consensus pattern (44 bp):
TTTGTTGTGTATCCACAGCCAGAGATAAATTCTATCTACGAGAT
Found at i:37261992 original size:31 final size:32
Alignment explanation
Indices: 37261925--37261992 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 32
37261915 ATTTTTTTTT
* *
37261925 TAATTTTGGGTAAAAAATACTTATCCCCTTCA
1 TAATTTTGGGTAAAAAACACTTATCCACTTCA
* * *
37261957 -AATTTTGTGTAAAATACATTTATCCACTT-A
1 TAATTTTGGGTAAAAAACACTTATCCACTTCA
37261987 TAATTT
1 TAATTT
37261993 CAAGAATTTC
Statistics
Matches: 30, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
30 1 0.03
31 29 0.97
ACGTcount: A:0.35, C:0.15, G:0.07, T:0.43
Consensus pattern (32 bp):
TAATTTTGGGTAAAAAACACTTATCCACTTCA
Found at i:37268310 original size:96 final size:96
Alignment explanation
Indices: 37268191--37268411 Score: 266
Period size: 96 Copynumber: 2.3 Consensus size: 96
37268181 TGTTTATTAT
* * *
37268191 TTTTTAATAAAAAATTAATTAAATTAGGGTTTAAAGTTACTTGAGTAATTTAATTAAAAATTATT
1 TTTTTAAGAAAAAATTAAATAAATTAGGGTTTAAAGTTACTTGAGTAAATTAATTAAAAATT-TT
*
37268256 TA-AAAGTCAGATAAGGGTTTAGAT-TTAAGGG
65 TATAAAATCAGATAAGGGTTTAG-TGTTAAGGG
* ** **
37268287 TTTTTAAGGAAAAATTAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTGTAAATTTTT
1 TTTTTAAGAAAAAATTAAATAAATTAGGGTTTAAAGTTACTTGAGTAAATTAATTAAAAATTTTT
** * *
37268352 ATAAAATTTGATTAGGGTTTAGTGTTTAGGG
66 ATAAAATCAGATAAGGGTTTAGTGTTAAGGG
* *
37268383 TTTTTAAGTAAAAACTCAAATAAATTAGG
1 TTTTTAAG-AAAAAATTAAATAAATTAGG
37268412 ATTTGGGGTT
Statistics
Matches: 106, Mismatches: 16, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
95 5 0.05
96 84 0.79
97 17 0.16
ACGTcount: A:0.40, C:0.02, G:0.17, T:0.40
Consensus pattern (96 bp):
TTTTTAAGAAAAAATTAAATAAATTAGGGTTTAAAGTTACTTGAGTAAATTAATTAAAAATTTTT
ATAAAATCAGATAAGGGTTTAGTGTTAAGGG
Found at i:37272332 original size:18 final size:18
Alignment explanation
Indices: 37272306--37272348 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
37272296 GACTAGAAAA
* * *
37272306 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
37272324 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
37272342 AGGATAC
1 AGGATAC
37272349 GCACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:37274170 original size:11 final size:10
Alignment explanation
Indices: 37274156--37274237 Score: 83
Period size: 11 Copynumber: 7.5 Consensus size: 10
37274146 TCTTTTAAAT
37274156 AGAAATCTGAG
1 AGAAAT-TGAG
37274167 AGAAATTTGAG
1 AGAAA-TTGAG
*
37274178 AGGAATTTGAG
1 A-GAAATTGAG
37274189 AGAAAATTGAG
1 AG-AAATTGAG
*
37274200 AGGAATTTGAG
1 A-GAAATTGAG
37274211 AGAATATTAGAG
1 AGAA-ATT-GAG
37274223 AGAAATTGAG
1 AGAAATTGAG
37274233 AGAAA
1 AGAAA
37274238 GGATTTAGTT
Statistics
Matches: 61, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
10 12 0.20
11 37 0.61
12 12 0.20
ACGTcount: A:0.48, C:0.01, G:0.29, T:0.22
Consensus pattern (10 bp):
AGAAATTGAG
Found at i:37274191 original size:22 final size:22
Alignment explanation
Indices: 37274163--37274237 Score: 107
Period size: 22 Copynumber: 3.4 Consensus size: 22
37274153 AATAGAAATC
37274163 TGAGAGAAATTTGAGAGGAATT
1 TGAGAGAAATTTGAGAGGAATT
*
37274185 TGAGAGAAAATTGAGAGGAATT
1 TGAGAGAAATTTGAGAGGAATT
* *
37274207 TGAGAGAATATTAGAGA-GAAAT
1 TGAGAGAA-ATTTGAGAGGAATT
37274229 TGAGAGAAA
1 TGAGAGAAA
37274238 GGATTTAGTT
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
21 1 0.02
22 41 0.85
23 6 0.12
ACGTcount: A:0.47, C:0.00, G:0.31, T:0.23
Consensus pattern (22 bp):
TGAGAGAAATTTGAGAGGAATT
Found at i:37274193 original size:33 final size:33
Alignment explanation
Indices: 37274156--37274237 Score: 114
Period size: 33 Copynumber: 2.5 Consensus size: 33
37274146 TCTTTTAAAT
37274156 AGAAATCTGAGAGAAATTTGAGAGGAAT-TT-GAG
1 AGAAAT-TGAGAGAAATTTGAGA-GAATATTAGAG
*
37274189 AGAAAATTGAGAGGAATTTGAGAGAATATTAGAG
1 AG-AAATTGAGAGAAATTTGAGAGAATATTAGAG
37274223 AGAAATTGAGAGAAA
1 AGAAATTGAGAGAAA
37274238 GGATTTAGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
32 4 0.09
33 31 0.70
34 9 0.20
ACGTcount: A:0.48, C:0.01, G:0.29, T:0.22
Consensus pattern (33 bp):
AGAAATTGAGAGAAATTTGAGAGAATATTAGAG
Found at i:37279637 original size:3 final size:3
Alignment explanation
Indices: 37279629--37279669 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
37279619 CAAAACCCAA
37279629 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
37279670 CCTTAGCAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:37280697 original size:28 final size:27
Alignment explanation
Indices: 37280666--37280725 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 27
37280656 AAAATCTCTC
* *
37280666 ATTTTCTTT-TTATTTCTTATAAAGTTAT
1 ATTTTATTTATTATTTCCT-TAAA-TTAT
*
37280694 ATTTTATTTATTTTTTCCTTAAATTAT
1 ATTTTATTTATTATTTCCTTAAATTAT
37280721 ATTTT
1 ATTTT
37280726 GTTGAGATCG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
27 9 0.32
28 12 0.43
29 7 0.25
ACGTcount: A:0.25, C:0.07, G:0.02, T:0.67
Consensus pattern (27 bp):
ATTTTATTTATTATTTCCTTAAATTAT
Found at i:37290666 original size:25 final size:25
Alignment explanation
Indices: 37290638--37290686 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
37290628 TACAATCTAT
* *
37290638 CTATAGTAGTCTCAGTATATACTAC
1 CTATAGCAGTCTCAATATATACTAC
*
37290663 CTATAGCAGTTTCAATATATACTA
1 CTATAGCAGTCTCAATATATACTA
37290687 TCAAAAATAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.35, C:0.18, G:0.10, T:0.37
Consensus pattern (25 bp):
CTATAGCAGTCTCAATATATACTAC
Found at i:37291587 original size:96 final size:97
Alignment explanation
Indices: 37291461--37291782 Score: 400
Period size: 97 Copynumber: 3.3 Consensus size: 97
37291451 GTTTTTAAAT
** * * * * *
37291461 TTTAGGG-TTTTAGGGAAAAAATTAAATAAATAAGGGTTTAGGGTTTCTTAATTAAATTAATTAT
1 TTTAGGGTTTTTAAAGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAT
*
37291525 AAATTTT-AAAAAATTAGATTAGGGTTTAGCG
66 AAATTTTAAAAAAATTAGATTAGGGTTTAGTG
* * *
37291556 TTTATGGTTTTTAAAGAAAAAATCAAATAAATTAGGGTTTAAGGCTACTTGAGTAAATTAATTAT
1 TTTAGGGTTTTTAAAGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAT
*
37291621 AAATTTTAAAAAAATTAGATTAGGATTTAGTG
66 AAATTTTAAAAAAATTAGATTAGGGTTTAGTG
* * * * *
37291653 TTTAGGGTTTTTAAGGAAAGAATAAAATAAATTAGGGATCAGGGTTACTTGAGTAAATTAATTAT
1 TTTAGGGTTTTTAAAGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAT
* *
37291718 AAATTTTAAAAAAAAAAGTAGATT-GAGGTTTAGTA
66 AAATTTT---AAAAAAATTAGATTAG-GGTTTAGTG
*
37291753 TTTAGGGTTTTT-AAGGAAAAATCAAATAAA
1 TTTAGGGTTTTTAAAGAAAAAATCAAATAAA
37291783 GATAGTTGTT
Statistics
Matches: 194, Mismatches: 27, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
95 6 0.03
96 55 0.28
97 86 0.44
99 15 0.08
100 32 0.16
ACGTcount: A:0.43, C:0.02, G:0.18, T:0.37
Consensus pattern (97 bp):
TTTAGGGTTTTTAAAGAAAAAATCAAATAAATTAGGGTTTAGGGTTACTTGAGTAAATTAATTAT
AAATTTTAAAAAAATTAGATTAGGGTTTAGTG
Found at i:37291858 original size:34 final size:33
Alignment explanation
Indices: 37291820--37291906 Score: 79
Period size: 33 Copynumber: 2.6 Consensus size: 33
37291810 AACTCCTCTA
37291820 AAAAAATAAAATAATAAAATTAAATGTTTTTAAT
1 AAAAAATAAAATAATAAAA-TAAATGTTTTTAAT
* * * * *
37291854 AAAAATTAAATTTATTAAAA-GAATTTTTTTAAT
1 AAAAAATAAA-ATAATAAAATAAATGTTTTTAAT
* *
37291887 AATAAATTAAAT-ATAAAATA
1 AAAAAATAAAATAATAAAATA
37291907 TATAATCAAT
Statistics
Matches: 40, Mismatches: 11, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
31 5 0.12
32 1 0.03
33 18 0.45
34 9 0.22
35 7 0.17
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (33 bp):
AAAAAATAAAATAATAAAATAAATGTTTTTAAT
Found at i:37292350 original size:11 final size:11
Alignment explanation
Indices: 37292334--37292359 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
37292324 GTTAGACTTG
37292334 ATAAATAATTT
1 ATAAATAATTT
37292345 ATAAATAATTT
1 ATAAATAATTT
37292356 ATAA
1 ATAA
37292360 TTTTTAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (11 bp):
ATAAATAATTT
Found at i:37292361 original size:18 final size:17
Alignment explanation
Indices: 37292338--37292378 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
37292328 GACTTGATAA
*
37292338 ATAATTTATAAATAATTT
1 ATAATTTATAAA-AAATT
*
37292356 ATAATTTTTAAAAAATT
1 ATAATTTATAAAAAATT
37292373 ATAATT
1 ATAATT
37292379 AATTTAATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
ATAATTTATAAAAAATT
Found at i:37292609 original size:39 final size:39
Alignment explanation
Indices: 37292517--37292616 Score: 121
Period size: 39 Copynumber: 2.5 Consensus size: 39
37292507 ATGGGTAAGT
**
37292517 GCTTCCTTAAGGAAGCGCTTTGTCCACGTGGACACAAAGC
1 GCTTCCTTAAGGAAGCTTTTTGTCCACGTGGA-ACAAAGC
* *
37292557 GCTCCCTCAAGGAAGCTTTTCTGTCCACGTGG-ACAAAGC
1 GCTTCCTTAAGGAAGCTTTT-TGTCCACGTGGAACAAAGC
* *
37292596 GCTTCCTTGAGGAAGATTTTT
1 GCTTCCTTAAGGAAGCTTTTT
37292617 TACTTCTTTA
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
38 1 0.02
39 23 0.45
40 16 0.31
41 11 0.22
ACGTcount: A:0.23, C:0.26, G:0.24, T:0.27
Consensus pattern (39 bp):
GCTTCCTTAAGGAAGCTTTTTGTCCACGTGGAACAAAGC
Found at i:37305421 original size:47 final size:47
Alignment explanation
Indices: 37305352--37305447 Score: 165
Period size: 47 Copynumber: 2.0 Consensus size: 47
37305342 TTTGGTCTTC
*
37305352 AAACAATGTTTTATATTACTTATATTGTTTCATTAAAAATTATAATT
1 AAACAATGTTTTATATTACTTATATTATTTCATTAAAAATTATAATT
* *
37305399 AAACAATGTTTTATATTACTTATATTATTTGATTAGAAATTATAATT
1 AAACAATGTTTTATATTACTTATATTATTTCATTAAAAATTATAATT
37305446 AA
1 AA
37305448 CACTACAAAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.42, C:0.05, G:0.05, T:0.48
Consensus pattern (47 bp):
AAACAATGTTTTATATTACTTATATTATTTCATTAAAAATTATAATT
Found at i:37308683 original size:44 final size:43
Alignment explanation
Indices: 37308629--37308736 Score: 162
Period size: 43 Copynumber: 2.5 Consensus size: 43
37308619 TGTCCTAGAC
**
37308629 ATGGTCTTACATGGAAATCTCGTATCGATGCCAATAGCCCAACT
1 ATGGTCTTACAT-GAAATCTCAAATCGATGCCAATAGCCCAACT
** *
37308673 ATGGTCTTACACAAAATCTCAAATCGATGCCAATAGCCCATCT
1 ATGGTCTTACATGAAATCTCAAATCGATGCCAATAGCCCAACT
37308716 ATGGTCTTACATGAAATCTCA
1 ATGGTCTTACATGAAATCTCA
37308737 CCTCAGAAGT
Statistics
Matches: 57, Mismatches: 7, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
43 46 0.81
44 11 0.19
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (43 bp):
ATGGTCTTACATGAAATCTCAAATCGATGCCAATAGCCCAACT
Found at i:37308930 original size:30 final size:30
Alignment explanation
Indices: 37308851--37308933 Score: 87
Period size: 31 Copynumber: 2.7 Consensus size: 30
37308841 ATTCAATGCT
* * *
37308851 CAAATCAATTCGACAATATATATACATATA
1 CAAATCAATTCGGCAATGTATATACACATA
* **
37308881 CGAATCAAATTTAGCAATGTATAT-CTACATA
1 CAAATC-AATTCGGCAATGTATATAC-ACATA
37308912 CAAATCAATTCGGCAATGTATA
1 CAAATCAATTCGGCAATGTATA
37308934 AAACATATAC
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
30 20 0.48
31 22 0.52
ACGTcount: A:0.45, C:0.17, G:0.08, T:0.30
Consensus pattern (30 bp):
CAAATCAATTCGGCAATGTATATACACATA
Found at i:37308944 original size:31 final size:30
Alignment explanation
Indices: 37308851--37308944 Score: 82
Period size: 31 Copynumber: 3.1 Consensus size: 30
37308841 ATTCAATGCT
* * *
37308851 CAAATCAATTCGACAATATATATACATATA
1 CAAATCAATTCGGCAATGTATAAACATATA
* ** * *
37308881 CGAATCAAATTTAGCAATGTAT-ATCTACATA
1 CAAATC-AATTCGGCAATGTATAAAC-ATATA
37308912 CAAATCAATTCGGCAATGTATAAAACATATA
1 CAAATCAATTCGGCAATGTAT-AAACATATA
37308943 CA
1 CA
37308945 TTTAAATTCA
Statistics
Matches: 47, Mismatches: 13, Indels: 7
0.70 0.19 0.10
Matches are distributed among these distances:
30 19 0.40
31 26 0.55
32 2 0.04
ACGTcount: A:0.47, C:0.17, G:0.07, T:0.29
Consensus pattern (30 bp):
CAAATCAATTCGGCAATGTATAAACATATA
Found at i:37311534 original size:190 final size:190
Alignment explanation
Indices: 37311285--37311664 Score: 688
Period size: 190 Copynumber: 2.0 Consensus size: 190
37311275 TGGTTGGGAT
* * * *
37311285 GAGCATAGGCAGCTTGTTGTTGTTGAAGATGTTGTGTGGAACTCATATATAAATGTAAGAATTAT
1 GAGCATAGGCAGCTTGTTGTTATTGAAGATGCTGTGTAGAAATCATATATAAATGTAAGAATTAT
* *
37311350 TTCAAGTCTTTATTATCTTATTTGACCAAACTTATATCTAAGATGAATTCCTCATTTTTATAGAG
66 TTCAACTCTTTATTATCTTATTTGACCAAACTTATATCTAAGATGAATTCATCATTTTTATAGAG
37311415 TCATAAAGAAACTGGTCAATTCAAACATCGTAGTTTCCCTTATTATGACCAACTTACTGC
131 TCATAAAGAAACTGGTCAATTCAAACATCGTAGTTTCCCTTATTATGACCAACTTACTGC
*
37311475 GAGCATAGGCAGCTTGTTGTTATTGAAGGTGCTGTGTAGAAATCATATATAAATGTAAGAATTAT
1 GAGCATAGGCAGCTTGTTGTTATTGAAGATGCTGTGTAGAAATCATATATAAATGTAAGAATTAT
*
37311540 TTCAACTCTTTATTATTTTATTTGACCAAACTTATATCTAAGATGAATTCATCATTTTTATAGAG
66 TTCAACTCTTTATTATCTTATTTGACCAAACTTATATCTAAGATGAATTCATCATTTTTATAGAG
37311605 TCATAAAGAAACTGGTCAATTCAAACATCGTAGTTTCCCTTATTATGACCAACTTACTGC
131 TCATAAAGAAACTGGTCAATTCAAACATCGTAGTTTCCCTTATTATGACCAACTTACTGC
37311665 CATCTACGCA
Statistics
Matches: 182, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
190 182 1.00
ACGTcount: A:0.32, C:0.15, G:0.15, T:0.37
Consensus pattern (190 bp):
GAGCATAGGCAGCTTGTTGTTATTGAAGATGCTGTGTAGAAATCATATATAAATGTAAGAATTAT
TTCAACTCTTTATTATCTTATTTGACCAAACTTATATCTAAGATGAATTCATCATTTTTATAGAG
TCATAAAGAAACTGGTCAATTCAAACATCGTAGTTTCCCTTATTATGACCAACTTACTGC
Found at i:37312609 original size:12 final size:12
Alignment explanation
Indices: 37312594--37312638 Score: 58
Period size: 12 Copynumber: 3.9 Consensus size: 12
37312584 TTCATATAAT
37312594 AATTATATTAAG
1 AATTATATTAAG
*
37312606 AATTTTATT-A-
1 AATTATATTAAG
37312616 AATTATATTAAG
1 AATTATATTAAG
*
37312628 AATTTTATTAA
1 AATTATATTAA
37312639 ATCATATTTA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 8 0.29
11 2 0.07
12 18 0.64
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (12 bp):
AATTATATTAAG
Found at i:37312619 original size:22 final size:22
Alignment explanation
Indices: 37312594--37312646 Score: 97
Period size: 22 Copynumber: 2.4 Consensus size: 22
37312584 TTCATATAAT
37312594 AATTATATTAAGAATTTTATTA
1 AATTATATTAAGAATTTTATTA
37312616 AATTATATTAAGAATTTTATTA
1 AATTATATTAAGAATTTTATTA
*
37312638 AATCATATT
1 AATTATATT
37312647 TAATAATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.45, C:0.02, G:0.04, T:0.49
Consensus pattern (22 bp):
AATTATATTAAGAATTTTATTA
Found at i:37312913 original size:16 final size:16
Alignment explanation
Indices: 37312892--37312943 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
37312882 TAAATTACTG
37312892 ATTACAACTTTATTCC
1 ATTACAACTTTATTCC
* * *
37312908 ATTACAGCTCTATTCA
1 ATTACAACTTTATTCC
37312924 ATTACAA-TTCTATTCC
1 ATTACAACTT-TATTCC
37312940 ATTA
1 ATTA
37312944 TAGTGAACCA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
15 1 0.03
16 28 0.97
ACGTcount: A:0.33, C:0.23, G:0.02, T:0.42
Consensus pattern (16 bp):
ATTACAACTTTATTCC
Found at i:37314138 original size:14 final size:14
Alignment explanation
Indices: 37314097--37314204 Score: 81
Period size: 14 Copynumber: 7.7 Consensus size: 14
37314087 GTTTGTATAT
*
37314097 ATGCGACTCAATAC
1 ATGCGAGTCAATAC
* *
37314111 ATGCAAGTCTATAC
1 ATGCGAGTCAATAC
*
37314125 ATGCGAGCCAATAC
1 ATGCGAGTCAATAC
* * *
37314139 TTGTGAGTCAATAT
1 ATGCGAGTCAATAC
* * *
37314153 ATGTGAGACAACAC
1 ATGCGAGTCAATAC
* * *
37314167 CTACGATTCAATAC
1 ATGCGAGTCAATAC
*
37314181 ATGCGAGTCAATAT
1 ATGCGAGTCAATAC
*
37314195 ATGCAAGTCA
1 ATGCGAGTCA
37314205 TAAATCACAT
Statistics
Matches: 69, Mismatches: 25, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
14 69 1.00
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (14 bp):
ATGCGAGTCAATAC
Found at i:37314262 original size:27 final size:26
Alignment explanation
Indices: 37314242--37314296 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 26
37314232 ACCCCTGCTT
37314242 GTGCGAACCTATGTGCAACCCCCTTA
1 GTGCGAACCTATGTGCAACCCCCTTA
* *
37314268 GGTGTGAACCTATGTGCGACCCCCCTTA
1 -GTGCGAACCTATGTGC-AACCCCCTTA
37314296 G
1 G
37314297 GTGTAAACCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 16 0.64
28 9 0.36
ACGTcount: A:0.20, C:0.33, G:0.24, T:0.24
Consensus pattern (26 bp):
GTGCGAACCTATGTGCAACCCCCTTA
Found at i:37314291 original size:28 final size:27
Alignment explanation
Indices: 37314246--37314305 Score: 93
Period size: 28 Copynumber: 2.2 Consensus size: 27
37314236 CTGCTTGTGC
37314246 GAACCTATGTGCAACCCCCTTAGGTGT
1 GAACCTATGTGCAACCCCCTTAGGTGT
*
37314273 GAACCTATGTGCGACCCCCCTTAGGTGT
1 GAACCTATGTGC-AACCCCCTTAGGTGT
*
37314301 AAACC
1 GAACC
37314306 CCTAACTATG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
27 12 0.40
28 18 0.60
ACGTcount: A:0.23, C:0.32, G:0.22, T:0.23
Consensus pattern (27 bp):
GAACCTATGTGCAACCCCCTTAGGTGT
Found at i:37314371 original size:34 final size:34
Alignment explanation
Indices: 37314315--37314424 Score: 116
Period size: 34 Copynumber: 3.3 Consensus size: 34
37314305 CCCTAACTAT
* * * *
37314315 GCGAGCTTATATGTTATACGAACTCTAGGAATGA
1 GCGAGCCTAAATGTTATGCGAACCCTAGGAATGA
*
37314349 GCGACCCTAAATGTTATGCGAACCCTAGGAAT-A
1 GCGAGCCTAAATGTTATGCGAACCCTAGGAATGA
* * * *
37314382 TGTGAGCCTATATG-TATGTGAACCCTAGGAATGT
1 -GCGAGCCTAAATGTTATGCGAACCCTAGGAATGA
37314416 GCGAGCCTA
1 GCGAGCCTA
37314425 CATGCGAACC
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
33 26 0.41
34 37 0.59
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (34 bp):
GCGAGCCTAAATGTTATGCGAACCCTAGGAATGA
Found at i:37314408 original size:33 final size:33
Alignment explanation
Indices: 37314312--37314458 Score: 115
Period size: 34 Copynumber: 4.5 Consensus size: 33
37314302 AACCCCTAAC
* * * *
37314312 TATGCGAGCTTATATGTTATACGAACTCTAGGAA
1 TATGTGAGCCTATATG-TATGCGAACCCTAGGAA
* * *
37314346 TGA-GCGACCCTAAATGTTATGCGAACCCTAGGAA
1 T-ATGTGAGCCTATATG-TATGCGAACCCTAGGAA
*
37314380 TATGTGAGCCTATATGTATGTGAACCCTAGGAA
1 TATGTGAGCCTATATGTATGCGAACCCTAGGAA
* * * *
37314413 TGTGCGAGCC--TA--CATGCGAACCCTAGGTA
1 TATGTGAGCCTATATGTATGCGAACCCTAGGAA
*
37314442 CATGTGAGCCTATATGT
1 TATGTGAGCCTATATGT
37314459 TACATGAAAT
Statistics
Matches: 89, Mismatches: 18, Indels: 13
0.74 0.15 0.11
Matches are distributed among these distances:
29 21 0.24
31 4 0.04
33 25 0.28
34 38 0.43
35 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (33 bp):
TATGTGAGCCTATATGTATGCGAACCCTAGGAA
Found at i:37314434 original size:29 final size:31
Alignment explanation
Indices: 37314364--37314439 Score: 84
Period size: 33 Copynumber: 2.5 Consensus size: 31
37314354 CCTAAATGTT
* *
37314364 ATGCGAACCCTAGGAATATGTGAGCCTATATGT
1 ATGCGAACCCTAGGAATATGCGAGCC-ATA-GC
* *
37314397 ATGTGAACCCTAGGAATGTGCGAGCC-TA-C
1 ATGCGAACCCTAGGAATATGCGAGCCATAGC
37314426 ATGCGAACCCTAGG
1 ATGCGAACCCTAGG
37314440 TACATGTGAG
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
29 13 0.34
31 2 0.05
33 23 0.61
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.22
Consensus pattern (31 bp):
ATGCGAACCCTAGGAATATGCGAGCCATAGC
Found at i:37314450 original size:29 final size:28
Alignment explanation
Indices: 37314364--37314453 Score: 74
Period size: 29 Copynumber: 2.9 Consensus size: 28
37314354 CCTAAATGTT
*
37314364 ATGCGAACCCTAGGAATATGTGAGCCTATATGT
1 ATGCGAACCCTAGG-A-ATGTGAGCC--TA-GC
*
37314397 ATGTGAACCCTAGGAATGTGCGAGCCTA-C
1 ATGCGAACCCTAGGAATGT--GAGCCTAGC
37314426 ATGCGAACCCTAGGTACATGTGAGCCTA
1 ATGCGAACCCTAGG-A-ATGTGAGCCTA
37314454 TATGTTACAT
Statistics
Matches: 50, Mismatches: 3, Indels: 12
0.77 0.05 0.18
Matches are distributed among these distances:
29 20 0.40
30 1 0.02
31 10 0.20
32 1 0.02
33 18 0.36
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.23
Consensus pattern (28 bp):
ATGCGAACCCTAGGAATGTGAGCCTAGC
Found at i:37315669 original size:21 final size:21
Alignment explanation
Indices: 37315643--37315689 Score: 76
Period size: 21 Copynumber: 2.2 Consensus size: 21
37315633 AATACTAGTG
37315643 ATGTTACTAAAATGAAATATA
1 ATGTTACTAAAATGAAATATA
* *
37315664 ATGTTACTATAATGGAATATA
1 ATGTTACTAAAATGAAATATA
37315685 ATGTT
1 ATGTT
37315690 GGATATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.45, C:0.04, G:0.13, T:0.38
Consensus pattern (21 bp):
ATGTTACTAAAATGAAATATA
Found at i:37320101 original size:69 final size:69
Alignment explanation
Indices: 37320001--37320136 Score: 209
Period size: 69 Copynumber: 2.0 Consensus size: 69
37319991 TATACACTGC
*
37320001 CATGGTCCAACCATAGTATTACGTCTAAAAAACTATCATAGCCTCGCTATGGTCTTACATAAACA
1 CATGGTCCAACCATAGTATTACGTCTAAAAAACTACCATAGCCTCGCTATGGTCTTACATAAACA
37320066 TTTT
66 TTTT
* * * * * *
37320070 CATGGTCCAGCCATGGTCTTGCGTCTGAAAAACTGCCATAGCCTCGCTATGGTCTTACATAAACA
1 CATGGTCCAACCATAGTATTACGTCTAAAAAACTACCATAGCCTCGCTATGGTCTTACATAAACA
37320135 TT
66 TT
37320137 GCCGTAGTCC
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 60 1.00
ACGTcount: A:0.29, C:0.25, G:0.15, T:0.30
Consensus pattern (69 bp):
CATGGTCCAACCATAGTATTACGTCTAAAAAACTACCATAGCCTCGCTATGGTCTTACATAAACA
TTTT
Found at i:37320147 original size:69 final size:69
Alignment explanation
Indices: 37319998--37320155 Score: 208
Period size: 69 Copynumber: 2.3 Consensus size: 69
37319988 ATATATACAC
* * * * *
37319998 TGCCATGGTCCAACCATAGTATTACGTCTAAAAAACTATCATAGCCTCGCTATGGTCTTACATAA
1 TGCCATAGTCCAACCATGGTCTTGCGTCTAAAAAACTACCATAGCCTCGCTATGGTCTTACATAA
37320063 ACAT
66 ACAT
** * * * *
37320067 TTTCATGGTCCAGCCATGGTCTTGCGTCTGAAAAACTGCCATAGCCTCGCTATGGTCTTACATAA
1 TGCCATAGTCCAACCATGGTCTTGCGTCTAAAAAACTACCATAGCCTCGCTATGGTCTTACATAA
37320132 ACAT
66 ACAT
*
37320136 TGCCGTAGTCCAACCATGGT
1 TGCCATAGTCCAACCATGGT
37320156 TTTGTACATT
Statistics
Matches: 75, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
69 75 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.29
Consensus pattern (69 bp):
TGCCATAGTCCAACCATGGTCTTGCGTCTAAAAAACTACCATAGCCTCGCTATGGTCTTACATAA
ACAT
Found at i:37328271 original size:30 final size:30
Alignment explanation
Indices: 37328202--37328271 Score: 72
Period size: 30 Copynumber: 2.3 Consensus size: 30
37328192 TCTTTAAATT
* *
37328202 TATTTTAATAAATAATAAAAATGTTTATAA
1 TATTTAAATAAATAAAAAAAATGTTTATAA
* *
37328232 TATTGAAATAAATAAAAAACAAT-TTT-TACC
1 TATTTAAATAAATAAAAAA-AATGTTTATA-A
37328262 TATTTAAATA
1 TATTTAAATA
37328272 TGTATCAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
29 2 0.06
30 28 0.85
31 3 0.09
ACGTcount: A:0.53, C:0.04, G:0.03, T:0.40
Consensus pattern (30 bp):
TATTTAAATAAATAAAAAAAATGTTTATAA
Found at i:37330323 original size:110 final size:111
Alignment explanation
Indices: 37330103--37330325 Score: 403
Period size: 111 Copynumber: 2.0 Consensus size: 111
37330093 ATGTTTAGCC
37330103 CAAACCCATTTTAAGTCTACCCATTTTATTTTTTCATTTTTTTGAAAAATATTTATATATTTTTT
1 CAAACCCATTTTAAGTCTACCCATTTTATTTTTTCATTTTTTTGAAAAATATTTATATATTTTTT
*
37330168 AATTTAATGTTTACTAAACTTATATATTTTCCCTTTATCAAAATTG
66 AATTTAATGTTGACTAAACTTATATATTTTCCCTTTATCAAAATTG
* *
37330214 CAAACCTATTTTAAGTCTACCCATTTTATTTTTTTATTTTTTTGAAAAATATTTATAT-TTTTTT
1 CAAACCCATTTTAAGTCTACCCATTTTATTTTTTCATTTTTTTGAAAAATATTTATATATTTTTT
*
37330278 AATTTAATGTTGACTAAATTTATATATTTTCCCTTTATCAAAATTG
66 AATTTAATGTTGACTAAACTTATATATTTTCCCTTTATCAAAATTG
37330324 CA
1 CA
37330326 TATATGCAAT
Statistics
Matches: 108, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
110 52 0.48
111 56 0.52
ACGTcount: A:0.31, C:0.13, G:0.04, T:0.52
Consensus pattern (111 bp):
CAAACCCATTTTAAGTCTACCCATTTTATTTTTTCATTTTTTTGAAAAATATTTATATATTTTTT
AATTTAATGTTGACTAAACTTATATATTTTCCCTTTATCAAAATTG
Found at i:37332541 original size:18 final size:18
Alignment explanation
Indices: 37332518--37332553 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
37332508 AGCCTCGTCT
* *
37332518 ATCACACGCCCGTGTTCG
1 ATCACAAGCCCATGTTCG
37332536 ATCACAAGCCCATGTTCG
1 ATCACAAGCCCATGTTCG
37332554 GTCATATGGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.22, C:0.36, G:0.19, T:0.22
Consensus pattern (18 bp):
ATCACAAGCCCATGTTCG
Found at i:37337628 original size:5 final size:5
Alignment explanation
Indices: 37337618--37337642 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
37337608 TTTGGTATAT
37337618 TAAAA TAAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA
37337643 AGGTAATTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:37338663 original size:20 final size:20
Alignment explanation
Indices: 37338634--37338671 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37338624 CTTGTACGAG
* *
37338634 ATTTGTACTTCGATGCCCTT
1 ATTTGCACTTCAATGCCCTT
37338654 ATTTGCACTTCAATGCCC
1 ATTTGCACTTCAATGCCC
37338672 CTGTATACAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.18, C:0.29, G:0.13, T:0.39
Consensus pattern (20 bp):
ATTTGCACTTCAATGCCCTT
Found at i:37338740 original size:20 final size:20
Alignment explanation
Indices: 37338705--37338755 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
37338695 TTCGCACTAC
* *
37338705 GGTGCCCATGTTTGCACATTT
1 GGTGCCCCTGTCTGCA-ATTT
*
37338726 -GTGCCCCTGTCTGCATTTT
1 GGTGCCCCTGTCTGCAATTT
37338745 GGTGCCCCTGT
1 GGTGCCCCTGT
37338756 TATGCATCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 3 0.12
20 23 0.88
ACGTcount: A:0.08, C:0.29, G:0.25, T:0.37
Consensus pattern (20 bp):
GGTGCCCCTGTCTGCAATTT
Found at i:37341592 original size:32 final size:32
Alignment explanation
Indices: 37341548--37341611 Score: 101
Period size: 32 Copynumber: 2.0 Consensus size: 32
37341538 ATATATTCCT
*
37341548 AGTTCTATATGTCGATGACATTTTGCTTGCCA
1 AGTTCTAGATGTCGATGACATTTTGCTTGCCA
* *
37341580 AGTTCTAGATGTCGTTGATATTTTGCTTGCCA
1 AGTTCTAGATGTCGATGACATTTTGCTTGCCA
37341612 CTAATGATAT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.42
Consensus pattern (32 bp):
AGTTCTAGATGTCGATGACATTTTGCTTGCCA
Found at i:37344922 original size:29 final size:27
Alignment explanation
Indices: 37344876--37344930 Score: 65
Period size: 29 Copynumber: 2.0 Consensus size: 27
37344866 ATATAGATAT
37344876 GAAAATATTCATTAAAAATATAAATATAG
1 GAAAATATTCATTAAAAA-A-AAATATAG
** *
37344905 GAAAATATTTGTTGAAAAAAAATATA
1 GAAAATATTCATTAAAAAAAAATATA
37344931 AATTTATATC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
27 7 0.30
28 1 0.04
29 15 0.65
ACGTcount: A:0.58, C:0.02, G:0.09, T:0.31
Consensus pattern (27 bp):
GAAAATATTCATTAAAAAAAAATATAG
Found at i:37346139 original size:18 final size:18
Alignment explanation
Indices: 37346116--37346150 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
37346106 TTTTGGGCCG
* *
37346116 CGTTTGTAATTGGGCCAC
1 CGTTTGAAATCGGGCCAC
37346134 CGTTTGAAATCGGGCCA
1 CGTTTGAAATCGGGCCA
37346151 TGTATTTTGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (18 bp):
CGTTTGAAATCGGGCCAC
Found at i:37346757 original size:44 final size:45
Alignment explanation
Indices: 37346667--37346757 Score: 105
Period size: 44 Copynumber: 2.0 Consensus size: 45
37346657 TCAGTCTGCC
* **
37346667 TCACTGCCAATATAAGAAGACAAGATCTGTTATTTTCAATCCACT
1 TCACTGCCAATACAAGAAGACAAGATCTGTTATCCTCAATCCACT
* * *
37346712 TCAC-GCCAATACATGAAGACAAGATCTGCTT-TCCTCGATCTACT
1 TCACTGCCAATACAAGAAGACAAGATCTG-TTATCCTCAATCCACT
37346756 TC
1 TC
37346758 GCCACCAATA
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
44 33 0.85
45 6 0.15
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.30
Consensus pattern (45 bp):
TCACTGCCAATACAAGAAGACAAGATCTGTTATCCTCAATCCACT
Found at i:37346796 original size:44 final size:43
Alignment explanation
Indices: 37346726--37347694 Score: 627
Period size: 44 Copynumber: 22.3 Consensus size: 43
37346716 GCCAATACAT
* *
37346726 GAAGACAAGATCTGCTTTCCTCGATCTACTTCGCCACCAATATG
1 GAAGACAAGATCTGC-ATCTTCGATCTACTTCGCCACCAATATG
*
37346770 GAAACACAAGATCTGCATCTTCGATCTACTTCGCCACCAATATGG
1 G-AAGACAAGATCTGCATCTTCGATCTACTTCGCCACCAATAT-G
* * **
37346815 GAAGACAAGATCT--AGTCTTCGATCCACTTC-CTAATAATATAG
1 GAAGACAAGATCTGCA-TCTTCGATCTACTTCGCCACCAATAT-G
* *
37346857 GAAGACAGGATCTG---C-T--A--T-CTTCGCCA--ATACAT-
1 GAAGACAAGATCTGCATCTTCGATCTACTTCGCCACCA-ATATG
*
37346889 GAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATG
1 GAAGACAAGATCTGC-ATCTTCGATCTACTTCGCCACCAATATG
* *
37346933 GAAAGACAAGATCT--AGTCTTCGATCCACTTC-CTACCAATATAG
1 G-AAGACAAGATCTGCA-TCTTCGATCTACTTCGCCACCAATAT-G
* * * * *
37346976 GAAGATAGGATCTGCTATCTTTGATCTACTTC-ACGCCAATACAT-
1 GAAGACAAGATCTGC-ATCTTCGATCTACTTCGCCACCAAT--ATG
* ** * *
37347020 GAGGACAAGATCTGTTTTCTTCGATCTACTTCACCACCAGTATGG
1 GAAGACAAGATCTG-CATCTTCGATCTACTTCGCCACCAATAT-G
* * * *
37347065 GAAGACAAGAACTACATCTTCGATCCACTTCGCTACCAATATAG
1 GAAGACAAGATCTGCATCTTCGATCTACTTCGCCACCAATAT-G
* * * *
37347109 GAAGACAGGATCTGTTATCTTCGATCTACTTC-ACGCCAATA--
1 GAAGACAAGATCTG-CATCTTCGATCTACTTCGCCACCAATATG
* * * * *
37347150 CATG-CAAAATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGG
1 GAAGACAAGATCTGC-ATCTTCGATCTACTTCGCCACCAATAT-G
* * *
37347194 GAAGACAAGATCTGCATCTTCGATCCACTTCGCTACTAATATAG
1 GAAGACAAGATCTGCATCTTCGATCTACTTCGCCACCAATAT-G
* * * *
37347238 GAAGACAGGATCTGTTATCTTCGATCTACTTC-ACGCCAATACAT-
1 GAAGACAAGATCTG-CATCTTCGATCTACTTCGCCACCAAT--ATG
* * * *
37347282 GAAGACAAGATCTGCTTTCTTCGATTTACTTCGCTACCAGTATGG
1 GAAGACAAGATCTGC-ATCTTCGATCTACTTCGCCACCAATAT-G
* * * * *
37347327 GAAGTCAAAATCTGCATCTTCGATCCACTTCACTACCAATATAG
1 GAAGACAAGATCTGCATCTTCGATCTACTTCGCCACCAATAT-G
* ** * * * *
37347371 GAAGACAATATCTATTATCTTTGATCTACTTC-ACGCCAATATA
1 GAAGACAAGATCT-GCATCTTCGATCTACTTCGCCACCAATATG
* * *
37347414 TAA-ATGCAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGG
1 GAAGA--CAAGATCTGC-ATCTTCGATCTACTTCGCCACCAATAT-G
* * * *
37347460 GAAGACAAGATCTGTATCTTCGATCCAATTC-CTACCAATATAG
1 GAAGACAAGATCTGCATCTTCGATCTACTTCGCCACCAATAT-G
* * *
37347503 GAAGACAGGATCTGCTATCTTCGATCTACTTC-ACGCCAATACAT-
1 GAAGACAAGATCTGC-ATCTTCGATCTACTTCGCCACCAAT--ATG
* * * * *
37347547 GAAGACAACATATGCTTTCTTCGATCTACTTCACCACCAGTATGG
1 GAAGACAAGATCTGC-ATCTTCGATCTACTTCGCCACCAATAT-G
* *
37347592 GAAGACAAGATCTGCATCTTCGATCCACTTCGCTACCAATATAG
1 GAAGACAAGATCTGCATCTTCGATCTACTTCGCCACCAATAT-G
* * * *
37347636 GAAGACAGGATCTGTTATCTTCGATCTACTTC-ACGCCAATACAT-
1 GAAGACAAGATCTG-CATCTTCGATCTACTTCGCCACCAAT--ATG
37347680 GAAGACAAGATCTGC
1 GAAGACAAGATCTGC
37347695 TGCTTTTTAG
Statistics
Matches: 713, Mismatches: 151, Indels: 123
0.72 0.15 0.12
Matches are distributed among these distances:
32 13 0.02
33 1 0.00
34 7 0.01
35 2 0.00
36 1 0.00
37 2 0.00
39 2 0.00
40 23 0.03
41 9 0.01
42 49 0.07
43 63 0.09
44 367 0.51
45 163 0.23
46 10 0.01
47 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
GAAGACAAGATCTGCATCTTCGATCTACTTCGCCACCAATATG
Found at i:37347152 original size:133 final size:133
Alignment explanation
Indices: 37346878--37347695 Score: 1294
Period size: 133 Copynumber: 6.2 Consensus size: 133
37346868 CTGCTATCTT
* *
37346878 CGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATATGGAAAGACAAG
1 CGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
* * *
37346943 ATCT--AGTCTTCGATCCACTTC-CTACCAATATAGGAAGATAGGATCTGCTATCTTTGATCTAC
66 ATCTGCA-TCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTAC
37347005 TTCA
130 TTCA
* * *
37347009 CGCCAATACATGAGGACAAGATCTGTTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAG
1 CGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
* *
37347074 AACTACATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACT
66 ATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACT
37347139 TCA
131 TCA
*
37347142 CGCCAATACAT---G-CAAAATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
1 CGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
*
37347203 ATCTGCATCTTCGATCCACTTCGCTACTAATATAGGAAGACAGGATCTGTTATCTTCGATCTACT
66 ATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACT
37347268 TCA
131 TCA
* * * *
37347271 CGCCAATACATGAAGACAAGATCTGCTTTCTTCGATTTACTTCGCTACCAGTATGGGAAGTCAAA
1 CGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
* ** * *
37347336 ATCTGCATCTTCGATCCACTTCACTACCAATATAGGAAGACAATATCTATTATCTTTGATCTACT
66 ATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACT
37347401 TCA
131 TCA
* *
37347404 CGCCAATATATAAATG-CAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAA
1 CGCCAATACATGAA-GACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAA
* * *
37347468 GATCTGTATCTTCGATCCAATTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTAC
65 GATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTAC
37347532 TTCA
130 TTCA
* * *
37347536 CGCCAATACATGAAGACAACATATGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAG
1 CGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
37347601 ATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACT
66 ATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACT
37347666 TCA
131 TCA
37347669 CGCCAATACATGAAGACAAGATCTGCT
1 CGCCAATACATGAAGACAAGATCTGCT
37347696 GCTTTTTAGC
Statistics
Matches: 628, Mismatches: 49, Indels: 18
0.90 0.07 0.03
Matches are distributed among these distances:
129 122 0.19
130 1 0.00
131 64 0.10
132 134 0.21
133 306 0.49
134 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (133 bp):
CGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
ATCTGCATCTTCGATCCACTTCGCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACT
TCA
Found at i:37358271 original size:23 final size:23
Alignment explanation
Indices: 37358241--37358286 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
37358231 GGTACCCGAA
37358241 CCAGCAGATTCCTCGATCTTTAC
1 CCAGCAGATTCCTCGATCTTTAC
37358264 CCAGCAGATTCCTCGATCTTTAC
1 CCAGCAGATTCCTCGATCTTTAC
37358287 AACAAGCTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.35, G:0.13, T:0.30
Consensus pattern (23 bp):
CCAGCAGATTCCTCGATCTTTAC
Found at i:37359072 original size:3 final size:3
Alignment explanation
Indices: 37359059--37359094 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
37359049 ATGTGCATGA
37359059 AAT AA- AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT
37359095 GATACAAGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 26 0.84
4 3 0.10
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:37359570 original size:23 final size:20
Alignment explanation
Indices: 37359542--37359630 Score: 92
Period size: 19 Copynumber: 4.3 Consensus size: 20
37359532 ATTAAATCTT
37359542 TAAGATTACAAAATCATATTTTC
1 TAAGATTACAAAATCATA---TC
*
37359565 TAAGATTAC-ATATCATATC
1 TAAGATTACAAAATCATATC
* *
37359584 TAAGATTACATATATCAAATC
1 TAAGATTACA-AAATCATATC
*
37359605 TAAGATTAC-ATATCATATC
1 TAAGATTACAAAATCATATC
37359624 TAAGATT
1 TAAGATT
37359631 GCATATCCTT
Statistics
Matches: 61, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
19 27 0.44
21 18 0.30
22 7 0.11
23 9 0.15
ACGTcount: A:0.44, C:0.13, G:0.06, T:0.37
Consensus pattern (20 bp):
TAAGATTACAAAATCATATC
Found at i:37359600 original size:21 final size:19
Alignment explanation
Indices: 37359563--37359637 Score: 114
Period size: 19 Copynumber: 3.8 Consensus size: 19
37359553 AATCATATTT
37359563 TCTAAGATTACATATCATA
1 TCTAAGATTACATATCATA
*
37359582 TCTAAGATTACATATATCAAA
1 TCTAAGATTAC--ATATCATA
37359603 TCTAAGATTACATATCATA
1 TCTAAGATTACATATCATA
*
37359622 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
37359638 CTTGAAGATT
Statistics
Matches: 51, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
19 33 0.65
21 18 0.35
ACGTcount: A:0.41, C:0.16, G:0.07, T:0.36
Consensus pattern (19 bp):
TCTAAGATTACATATCATA
Found at i:37375623 original size:24 final size:24
Alignment explanation
Indices: 37375567--37375679 Score: 77
Period size: 24 Copynumber: 4.8 Consensus size: 24
37375557 AATCTATACT
*
37375567 TGAACCCCCATGTGAACCCCCATG
1 TGAACCCCCATGCGAACCCCCATG
** * *
37375591 CAAAACCCCATGCGAACCCCCTTG
1 TGAACCCCCATGCGAACCCCCATG
* * * *
37375615 TGAACCCCC-TACAAACTCTCATG
1 TGAACCCCCATGCGAACCCCCATG
* * * *
37375638 CGAACACCCTTGCAAACCCCCATG
1 TGAACCCCCATGCGAACCCCCATG
* *
37375662 CGAA-CACCATGCGAACCC
1 TGAACCCCCATGCGAACCC
37375680 ATGTAAACGA
Statistics
Matches: 66, Mismatches: 22, Indels: 3
0.73 0.24 0.03
Matches are distributed among these distances:
23 26 0.39
24 40 0.61
ACGTcount: A:0.29, C:0.43, G:0.13, T:0.14
Consensus pattern (24 bp):
TGAACCCCCATGCGAACCCCCATG
Found at i:37375624 original size:12 final size:12
Alignment explanation
Indices: 37375567--37375623 Score: 69
Period size: 12 Copynumber: 4.8 Consensus size: 12
37375557 AATCTATACT
37375567 TGAACCCCCATG
1 TGAACCCCCATG
37375579 TGAACCCCCATG
1 TGAACCCCCATG
** *
37375591 CAAAACCCCATG
1 TGAACCCCCATG
* *
37375603 CGAACCCCCTTG
1 TGAACCCCCATG
37375615 TGAACCCCC
1 TGAACCCCC
37375624 TACAAACTCT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.26, C:0.46, G:0.14, T:0.14
Consensus pattern (12 bp):
TGAACCCCCATG
Found at i:37375648 original size:35 final size:36
Alignment explanation
Indices: 37375568--37375679 Score: 113
Period size: 35 Copynumber: 3.2 Consensus size: 36
37375558 ATCTATACTT
* *
37375568 GAACCCCCATGTGAACCCCCATGCAAAACCCCATGC
1 GAACCCCCTTGTGAACCCCCATACAAAACCCCATGC
*
37375604 GAACCCCCTTGTGAACCCCC-TAC-AAACTCTCATGC
1 GAACCCCCTTGTGAACCCCCATACAAAAC-CCCATGC
* ** * * *
37375639 GAACACCCTTGCAAACCCCCATGC-GAACACCATGC
1 GAACCCCCTTGTGAACCCCCATACAAAACCCCATGC
37375674 GAACCC
1 GAACCC
37375680 ATGTAAACGA
Statistics
Matches: 63, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
34 4 0.06
35 35 0.56
36 24 0.38
ACGTcount: A:0.29, C:0.44, G:0.13, T:0.13
Consensus pattern (36 bp):
GAACCCCCTTGTGAACCCCCATACAAAACCCCATGC
Found at i:37377330 original size:26 final size:25
Alignment explanation
Indices: 37377273--37377360 Score: 76
Period size: 26 Copynumber: 3.6 Consensus size: 25
37377263 GTTACACGGC
37377273 TCTTAGTGAGCTTCCCGA-T-AGGT
1 TCTTAGTGAGCTTCCCGATTAAGGT
* *
37377296 TCTTCGTGAGCTTCCCGATTAAATGT
1 TCTTAGTGAGCTTCCCGATT-AAGGT
* * * *
37377322 TCTTTGTGAACTTCCTGATTATA-GC
1 TCTTAGTGAGCTTCCCGATTA-AGGT
37377347 TCTTA-TGAGCTTCC
1 TCTTAGTGAGCTTCC
37377361 TAATATAGCC
Statistics
Matches: 53, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
23 17 0.32
24 9 0.17
25 6 0.11
26 21 0.40
ACGTcount: A:0.18, C:0.23, G:0.19, T:0.40
Consensus pattern (25 bp):
TCTTAGTGAGCTTCCCGATTAAGGT
Found at i:37380444 original size:17 final size:17
Alignment explanation
Indices: 37380384--37380435 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
37380374 AATTAAAATT
37380384 AAATAATAAAA-ATTACA
1 AAATAA-AAAATATTACA
* *
37380401 TAATATTAAAAATATTATA
1 -AA-ATAAAAAATATTACA
37380420 AAATAAAAAATATTAC
1 AAATAAAAAATATTAC
37380436 CAATTAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 5
0.76 0.11 0.14
Matches are distributed among these distances:
17 12 0.43
18 8 0.29
19 8 0.29
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (17 bp):
AAATAAAAAATATTACA
Found at i:37383595 original size:16 final size:17
Alignment explanation
Indices: 37383568--37383601 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
37383558 TAGAATTGGG
*
37383568 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
37383585 TTGAG-AAATTAATTAA
1 TTGAGAAAATTAATTAA
37383601 T
1 T
37383602 ATAATTAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 11 0.69
17 5 0.31
ACGTcount: A:0.47, C:0.00, G:0.12, T:0.41
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:37390568 original size:14 final size:14
Alignment explanation
Indices: 37390549--37390576 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37390539 AATATATTCA
37390549 AATAGCAGATAGAC
1 AATAGCAGATAGAC
37390563 AATAGCAGATAGAC
1 AATAGCAGATAGAC
37390577 TGCGATATAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.21, T:0.14
Consensus pattern (14 bp):
AATAGCAGATAGAC
Found at i:37391614 original size:69 final size:69
Alignment explanation
Indices: 37391498--37391634 Score: 193
Period size: 69 Copynumber: 2.0 Consensus size: 69
37391488 TGTCATCTGT
* * *
37391498 AAAATTAAGGTTCGCATGCGAAGAGCCGTGACCTCCAGCACAATTAGCGAGAGTAAAGCTCCCAG
1 AAAATTAAGGTTCGCAAGCGAAGAGCCGCGACCTCCAGCACAATTAGCGAGAGCAAAGCTCCCAG
37391563 CTGA
66 CTGA
* * * * * *
37391567 AAAATTAAGGTTCGCAAGTGAAGAGCTGCGACCTCTAGCACAGTTAGCGAGAGCAAAGTTCTCAG
1 AAAATTAAGGTTCGCAAGCGAAGAGCCGCGACCTCCAGCACAATTAGCGAGAGCAAAGCTCCCAG
37391632 CTG
66 CTG
37391635 TAAACTATGG
Statistics
Matches: 59, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
69 59 1.00
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.19
Consensus pattern (69 bp):
AAAATTAAGGTTCGCAAGCGAAGAGCCGCGACCTCCAGCACAATTAGCGAGAGCAAAGCTCCCAG
CTGA
Found at i:37394241 original size:42 final size:43
Alignment explanation
Indices: 37394130--37394245 Score: 119
Period size: 42 Copynumber: 2.7 Consensus size: 43
37394120 CTCGTACAAT
* * * *
37394130 GCCAACGTCCCAGACG-TGGTCTTACATGTAATCAAACAATGAT
1 GCCAATGTCCCAGA-GATGGTCTTACACGTAATCAAACAACGAC
* * * * * *
37394173 GCCACTGTCTCAGACAGGGTCTTACACGTAATCATA-TACGAC
1 GCCAATGTCCCAGAGATGGTCTTACACGTAATCAAACAACGAC
37394215 GCCAATGTCCCAGAGATGGTCTTACACGTAA
1 GCCAATGTCCCAGAGATGGTCTTACACGTAA
37394246 ATATCAAATC
Statistics
Matches: 58, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
42 30 0.52
43 28 0.48
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (43 bp):
GCCAATGTCCCAGAGATGGTCTTACACGTAATCAAACAACGAC
Found at i:37399193 original size:19 final size:20
Alignment explanation
Indices: 37399137--37399194 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 20
37399127 TGTTATAATT
37399137 TTTTTAAAATATAAATTTTAGAA
1 TTTTTAAAA-AT--ATTTTAGAA
*
37399160 TTTTTATAAATATTTTA-AA
1 TTTTTAAAAATATTTTAGAA
37399179 -TTTTAAAAATCATTTT
1 TTTTTAAAAAT-ATTTT
37399195 GAAAATTAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
18 9 0.28
19 7 0.22
20 6 0.19
22 2 0.06
23 8 0.25
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (20 bp):
TTTTTAAAAATATTTTAGAA
Found at i:37403253 original size:27 final size:25
Alignment explanation
Indices: 37403214--37403269 Score: 58
Period size: 27 Copynumber: 2.2 Consensus size: 25
37403204 AAATTAGCTA
**
37403214 AATTAGCCATATATGTCAGTTTTTTTT
1 AATTAGCCATATAAATC-G-TTTTTTT
* *
37403241 AATTAGGCTTATAAATCGTTTTTTT
1 AATTAGCCATATAAATCGTTTTTTT
37403266 AATT
1 AATT
37403270 TAGGGAAATA
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
25 11 0.44
26 1 0.04
27 13 0.52
ACGTcount: A:0.29, C:0.09, G:0.11, T:0.52
Consensus pattern (25 bp):
AATTAGCCATATAAATCGTTTTTTT
Found at i:37403280 original size:26 final size:25
Alignment explanation
Indices: 37403234--37403288 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 25
37403224 ATATGTCAGT
**
37403234 TTTTTTTAATTAGGCTTATAAATCG
1 TTTTTTTAATTAGGCAAATAAATCG
* *
37403259 TTTTTTTAATTTAGGGAAATAAGTCG
1 TTTTTTTAA-TTAGGCAAATAAATCG
37403285 TTTT
1 TTTT
37403289 GGAGAGAGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.27, C:0.05, G:0.15, T:0.53
Consensus pattern (25 bp):
TTTTTTTAATTAGGCAAATAAATCG
Found at i:37414901 original size:25 final size:25
Alignment explanation
Indices: 37414862--37414912 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
37414852 ATGATATAAT
*
37414862 ACTTATTATAATCTTTTAAATTATA
1 ACTTATCATAATCTTTTAAATTATA
*
37414887 ACTTATCATATTCTTTTAAATTATA
1 ACTTATCATAATCTTTTAAATTATA
37414912 A
1 A
37414913 TTTTATTATG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.39, C:0.10, G:0.00, T:0.51
Consensus pattern (25 bp):
ACTTATCATAATCTTTTAAATTATA
Found at i:37424077 original size:11 final size:11
Alignment explanation
Indices: 37424061--37424092 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
37424051 TTTAAACTTA
37424061 TAAAAATATTT
1 TAAAAATATTT
37424072 T-AAAA-ATTT
1 TAAAAATATTT
37424081 TAAAAATATTT
1 TAAAAATATTT
37424092 T
1 T
37424093 TTATAATTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 5 0.26
10 8 0.42
11 6 0.32
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
TAAAAATATTT
Found at i:37424081 original size:29 final size:30
Alignment explanation
Indices: 37424019--37424087 Score: 79
Period size: 29 Copynumber: 2.3 Consensus size: 30
37424009 TTTAATTAAT
* *
37424019 TTTTTAAAATTTAAAAAATATTTTTATAAG
1 TTTTTAAAATTTAAAAAATATTTTTAAAAA
*
37424049 TTTTT-AAACTTATAAAAATA-TTTTAAAAA
1 TTTTTAAAATTTA-AAAAATATTTTTAAAAA
*
37424078 TTTTAAAAAT
1 TTTTTAAAAT
37424088 ATTTTTTATA
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
29 17 0.53
30 15 0.47
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (30 bp):
TTTTTAAAATTTAAAAAATATTTTTAAAAA
Found at i:37424117 original size:50 final size:49
Alignment explanation
Indices: 37424016--37424131 Score: 137
Period size: 50 Copynumber: 2.3 Consensus size: 49
37424006 TCATTTAATT
*
37424016 AATTTTTTAAAATTTAAAAAATATTTTTATAAGTTTTTAAACTTATAAA
1 AATTTTTAAAAATTTAAAAAATATTTTTATAAGTTTTTAAACTTATAAA
* * * *
37424065 AATATTTTAAAAATTTTAAAAATATTTTTTATAATTTTTTTGAA-TT-TTAA
1 AAT-TTTTAAAAATTTAAAAAATA-TTTTTATAA-GTTTTTAAACTTATAAA
*
37424115 AATTTTAAAAAATTTAA
1 AATTTTTAAAAATTTAA
37424132 TTAAACACTA
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
49 15 0.26
50 24 0.42
51 11 0.19
52 7 0.12
ACGTcount: A:0.47, C:0.01, G:0.02, T:0.51
Consensus pattern (49 bp):
AATTTTTAAAAATTTAAAAAATATTTTTATAAGTTTTTAAACTTATAAA
Found at i:37425142 original size:20 final size:19
Alignment explanation
Indices: 37425106--37425144 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
37425096 ATTAAAGGAG
* *
37425106 AAATTAAATTAATTTGATT
1 AAATTAAATCAAATTGATT
37425125 AAATTCAAATCAAATTGATT
1 AAATT-AAATCAAATTGATT
37425145 TGAATCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (19 bp):
AAATTAAATCAAATTGATT
Found at i:37426416 original size:21 final size:21
Alignment explanation
Indices: 37426392--37426434 Score: 61
Period size: 20 Copynumber: 2.0 Consensus size: 21
37426382 ACCTAAACCC
37426392 TAAACTTATAAAAATA-TTTTT
1 TAAA-TTATAAAAATAGTTTTT
*
37426413 TAAATTTTAAAAATAGTTTTT
1 TAAATTATAAAAATAGTTTTT
37426434 T
1 T
37426435 TATAATTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 10 0.50
21 10 0.50
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
TAAATTATAAAAATAGTTTTT
Found at i:37431968 original size:21 final size:21
Alignment explanation
Indices: 37431944--37431983 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
37431934 TTTTTTAAGC
37431944 CAACACACCAATTTTGACTAT
1 CAACACACCAATTTTGACTAT
** *
37431965 CAACATGCCTATTTTGACT
1 CAACACACCAATTTTGACT
37431984 GGCATAATTC
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.33, C:0.28, G:0.07, T:0.33
Consensus pattern (21 bp):
CAACACACCAATTTTGACTAT
Found at i:37433299 original size:20 final size:19
Alignment explanation
Indices: 37433274--37433323 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 19
37433264 TAATATATTT
37433274 TATTATTAAAATATTAAAAA
1 TATTATTAAAAT-TTAAAAA
* *
37433294 TATTATTTAAACTTTAAAAT
1 TATTA-TTAAAATTTAAAAA
37433314 TATTAATTAA
1 TATT-ATTAA
37433324 CGTTAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
20 19 0.73
21 7 0.27
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (19 bp):
TATTATTAAAATTTAAAAA
Found at i:37433329 original size:19 final size:20
Alignment explanation
Indices: 37433287--37433330 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
37433277 TATTAAAATA
* *
37433287 TTAAAAATATTATTTAAACT
1 TTAAAAATATTAATTAAACG
*
37433307 TTAAAATTATTAATT-AACG
1 TTAAAAATATTAATTAAACG
37433326 TTAAA
1 TTAAA
37433331 TTTTATTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 8 0.38
20 13 0.62
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (20 bp):
TTAAAAATATTAATTAAACG
Found at i:37436811 original size:43 final size:43
Alignment explanation
Indices: 37436699--37436798 Score: 164
Period size: 43 Copynumber: 2.3 Consensus size: 43
37436689 CGTTATTGAT
*
37436699 AACGCCGCTAAAGAACAAGACCTTTAGCAGCGCTCTTCCCACA
1 AACGCCGCTAAAGAACAAGACCTTTAACAGCGCTCTTCCCACA
* * *
37436742 AACGCCGCTAAAGAACAAGACCTTTAACGGCGCTTTTCTCACA
1 AACGCCGCTAAAGAACAAGACCTTTAACAGCGCTCTTCCCACA
37436785 AACGCCGCTAAAGA
1 AACGCCGCTAAAGA
37436799 TTATGACCTT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (43 bp):
AACGCCGCTAAAGAACAAGACCTTTAACAGCGCTCTTCCCACA
Found at i:37440013 original size:9 final size:9
Alignment explanation
Indices: 37439999--37440051 Score: 52
Period size: 9 Copynumber: 5.4 Consensus size: 9
37439989 GTTTAAATTT
37439999 TTTTTAAAA
1 TTTTTAAAA
37440008 TTTTTAAAA
1 TTTTTAAAA
**
37440017 AATTTAAAA
1 TTTTTAAAA
37440026 TCTTTTAAAA
1 T-TTTTAAAA
37440036 TTCATTTTAAAA
1 -T--TTTTAAAA
37440048 TTTT
1 TTTT
37440052 AAATCACGAA
Statistics
Matches: 36, Mismatches: 5, Indels: 6
0.77 0.11 0.13
Matches are distributed among these distances:
9 19 0.53
10 7 0.19
11 2 0.06
12 8 0.22
ACGTcount: A:0.43, C:0.04, G:0.00, T:0.53
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:37440423 original size:21 final size:18
Alignment explanation
Indices: 37440381--37440434 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 18
37440371 CAAAACACGC
*
37440381 AAAAAACTGAACTGGATA
1 AAAAAACTGAACCGGATA
37440399 AAAAAACTGAACCGAGCACTA
1 AAAAAACTGAACCG-G-A-TA
*
37440420 AAAATACTGAACCGG
1 AAAAAACTGAACCGG
37440435 GATGGGAGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
18 13 0.42
19 1 0.03
20 2 0.06
21 15 0.48
ACGTcount: A:0.52, C:0.19, G:0.17, T:0.13
Consensus pattern (18 bp):
AAAAAACTGAACCGGATA
Found at i:37440610 original size:7 final size:7
Alignment explanation
Indices: 37440580--37440719 Score: 63
Period size: 7 Copynumber: 19.6 Consensus size: 7
37440570 CTAGTTAATC
*
37440580 TAAACCC
1 TAAACCA
*
37440587 TAAATCA
1 TAAACCA
37440594 TAAACC-
1 TAAACCA
*
37440600 TAAACCT
1 TAAACCA
*
37440607 TAAAACCC
1 T-AAACCA
37440615 TAAAACCA
1 T-AAACCA
*
37440623 TAAACCC
1 TAAACCA
*
37440630 TTAACACA
1 TAAAC-CA
37440638 T-AACTTC-
1 TAAAC--CA
*
37440645 TAAACCT
1 TAAACCA
37440652 TAAACC-
1 TAAACCA
** *
37440658 CCAACCT
1 TAAACCA
37440665 TTAAACCA
1 T-AAACCA
37440673 TAAACCA
1 TAAACCA
37440680 TAAACCA
1 TAAACCA
* *
37440687 TAACCCC
1 TAAACCA
37440694 TAAACCCA
1 TAAA-CCA
*
37440702 TAATCCA
1 TAAACCA
*
37440709 TAAACCT
1 TAAACCA
37440716 TAAA
1 TAAA
37440720 ATGGTAACAC
Statistics
Matches: 103, Mismatches: 21, Indels: 18
0.73 0.15 0.13
Matches are distributed among these distances:
6 11 0.11
7 63 0.61
8 29 0.28
ACGTcount: A:0.47, C:0.32, G:0.00, T:0.21
Consensus pattern (7 bp):
TAAACCA
Found at i:37441027 original size:41 final size:41
Alignment explanation
Indices: 37440952--37441450 Score: 678
Period size: 41 Copynumber: 12.2 Consensus size: 41
37440942 TAAATTATTT
* *
37440952 TAAATCCCTGAGCATTAGCGGCGCTTTCTCAAAAATGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * *
37440993 TAAAGCCTTGAGCATTAGTGGCG-TTTCTTAAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTC-TCAAAAACGCCGC
* * * *
37441034 TAAAG-CCTAAGCATTAGCGGCGCTTCCCCAAAAACGCCAC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* *
37441074 TAAGGCCCTGAGCATTAGCGGCGCTTCCTCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* *
37441115 TAAAGCCCTGAACATTAGCGGCGCTTTCCCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * * *
37441156 TAAAACCCTGAGCATTAACGACGCTTCCTCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
37441197 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * ** *
37441238 TAAATCCCTGATCATTAGCGATGCTTTCTCAAAAACGCCTC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* *
37441279 TAAATCCCTGAGCATTAGCGGCGCTTTCTCAAAAATGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
*
37441320 TAAAGCCCTGAGCATTAGCGGTGCTTTCTCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * ** *
37441361 TAAATCCCTGATCATTAGCGATGCTTTCTCAAAAACGCCTC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
* * *
37441402 TAAATCCCTGAGCATTAGTGGCGCTTTCTCAAAAATGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
37441443 TAAAGCCC
1 TAAAGCCC
37441451 CGGAAGCTCA
Statistics
Matches: 401, Mismatches: 54, Indels: 6
0.87 0.12 0.01
Matches are distributed among these distances:
40 32 0.08
41 369 0.92
ACGTcount: A:0.29, C:0.30, G:0.19, T:0.22
Consensus pattern (41 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
Found at i:37453661 original size:20 final size:20
Alignment explanation
Indices: 37453636--37453687 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
37453626 ACCATTTTAG
* *
37453636 AAATATCAATA-TTTTTATAA
1 AAATATCAATACTTATGA-AA
*
37453656 AAATATCGATACTTATGAAA
1 AAATATCAATACTTATGAAA
37453676 AAATATCAATAC
1 AAATATCAATAC
37453688 CACGGGCTAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
20 23 0.85
21 4 0.15
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.35
Consensus pattern (20 bp):
AAATATCAATACTTATGAAA
Found at i:37456196 original size:28 final size:28
Alignment explanation
Indices: 37456160--37456219 Score: 68
Period size: 28 Copynumber: 2.2 Consensus size: 28
37456150 TTTTCCAAAG
* *
37456160 TTTT-CAATTCAGCCACTTTTTTTTAGA
1 TTTTACAATTCAGCCACTATTTTTAAGA
**
37456187 TTTTACAATTTTGCCACTATTTTTAAGA
1 TTTTACAATTCAGCCACTATTTTTAAGA
*
37456215 ATTTA
1 TTTTA
37456220 TAGTTTTGCC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 4 0.15
28 23 0.85
ACGTcount: A:0.27, C:0.15, G:0.07, T:0.52
Consensus pattern (28 bp):
TTTTACAATTCAGCCACTATTTTTAAGA
Found at i:37456210 original size:29 final size:29
Alignment explanation
Indices: 37456054--37456235 Score: 104
Period size: 29 Copynumber: 6.3 Consensus size: 29
37456044 TTTATAGTTC
* * *
37456054 TGCCATTA-TTTTCTAGAATTTTATAGTTT
1 TGCCACTATTTTTCTAG-ATTTTACAATTT
* * ** *
37456083 TGCC-CTTAGTTTTCTGGATTTTTTAATTA
1 TGCCAC-TATTTTTCTAGATTTTACAATTT
* * *
37456112 TGCCACTATTTTTCTAGTTTTTATAGTTT
1 TGCCACTATTTTTCTAGATTTTACAATTT
** * * *
37456141 TGCCACTGGTTTTCCAAAGTTTT-CAATTC
1 TGCCACTATTTTTCTAGA-TTTTACAATTT
* *
37456170 AGCCACT-TTTTTTTAGATTTTACAATTT
1 TGCCACTATTTTTCTAGATTTTACAATTT
* * * *
37456198 TGCCACTATTTTT-AAGAATTTATAGTTT
1 TGCCACTATTTTTCTAGATTTTACAATTT
37456226 TGCCACTATT
1 TGCCACTATT
37456236 CTTCAAAAAA
Statistics
Matches: 117, Mismatches: 30, Indels: 13
0.73 0.19 0.08
Matches are distributed among these distances:
27 4 0.03
28 38 0.32
29 63 0.54
30 12 0.10
ACGTcount: A:0.22, C:0.15, G:0.11, T:0.52
Consensus pattern (29 bp):
TGCCACTATTTTTCTAGATTTTACAATTT
Found at i:37456226 original size:28 final size:28
Alignment explanation
Indices: 37456171--37456235 Score: 85
Period size: 28 Copynumber: 2.3 Consensus size: 28
37456161 TTTCAATTCA
* * *
37456171 GCCACTTTTTTTTAGATTTTACAATTTT
1 GCCACTATTTTTAAGAATTTACAATTTT
* *
37456199 GCCACTATTTTTAAGAATTTATAGTTTT
1 GCCACTATTTTTAAGAATTTACAATTTT
37456227 GCCACTATT
1 GCCACTATT
37456236 CTTCAAAAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.25, C:0.15, G:0.09, T:0.51
Consensus pattern (28 bp):
GCCACTATTTTTAAGAATTTACAATTTT
Found at i:37457267 original size:37 final size:36
Alignment explanation
Indices: 37457186--37457275 Score: 101
Period size: 37 Copynumber: 2.4 Consensus size: 36
37457176 TTGAACCGTA
* *
37457186 TTGAATTGATTGATATACGAGACTGTTTGTTATCATG
1 TTGAATTGATTGATATACGAAACTGTTTGTCAT-ATG
* **
37457223 TTAAATTGATTGATATGTGAAACTGTTTGTCAT-TG
1 TTGAATTGATTGATATACGAAACTGTTTGTCATATG
37457258 TACTGAATTGATTGATAT
1 T--TGAATTGATTGATAT
37457276 TACTGTACAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
35 3 0.07
37 42 0.93
ACGTcount: A:0.29, C:0.07, G:0.20, T:0.44
Consensus pattern (36 bp):
TTGAATTGATTGATATACGAAACTGTTTGTCATATG
Found at i:37458288 original size:20 final size:20
Alignment explanation
Indices: 37458263--37458324 Score: 79
Period size: 20 Copynumber: 3.1 Consensus size: 20
37458253 ACAATTTTAA
* *
37458263 AATCAAGTGAAAATGATTTT
1 AATCAAGTCAAAATAATTTT
*
37458283 AATCAAGTCAAAATAATTTC
1 AATCAAGTCAAAATAATTTT
* *
37458303 AATCAAGTTAAAATTATTTT
1 AATCAAGTCAAAATAATTTT
37458323 AA
1 AA
37458325 GACATCAAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.35
Consensus pattern (20 bp):
AATCAAGTCAAAATAATTTT
Found at i:37458343 original size:40 final size:40
Alignment explanation
Indices: 37458263--37458350 Score: 99
Period size: 40 Copynumber: 2.2 Consensus size: 40
37458253 ACAATTTTAA
*
37458263 AATCAAGTGAAAATGATTTTAATCAAGTCAAAATAATTTC
1 AATCAAGTGAAAATGATTTTAAACAAGTCAAAATAATTTC
* * *
37458303 AATCAAGTTAAAATTATTTTAAGAC-A-TCAAAATGATTTTC
1 AATCAAGTGAAAATGATTTTAA-ACAAGTCAAAAT-AATTTC
*
37458343 AAACAAGT
1 AATCAAGT
37458351 CAGGATTGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
39 7 0.17
40 33 0.80
41 1 0.02
ACGTcount: A:0.48, C:0.10, G:0.09, T:0.33
Consensus pattern (40 bp):
AATCAAGTGAAAATGATTTTAAACAAGTCAAAATAATTTC
Found at i:37459600 original size:25 final size:25
Alignment explanation
Indices: 37459552--37459601 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
37459542 GACACACGGC
* *
37459552 CGTGTGAAATAATGTAGGCCGTGTG
1 CGTGTGAAATAATGTAGACAGTGTG
37459577 CGTGTGAAATCAA-GTAGACAGTGTG
1 CGTGTGAAAT-AATGTAGACAGTGTG
37459602 GACCACATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.28, C:0.12, G:0.34, T:0.26
Consensus pattern (25 bp):
CGTGTGAAATAATGTAGACAGTGTG
Found at i:37465342 original size:18 final size:21
Alignment explanation
Indices: 37465314--37465353 Score: 59
Period size: 18 Copynumber: 2.0 Consensus size: 21
37465304 ATATATATGT
37465314 ATTATTTTAAAA-AT-AAAAA
1 ATTATTTTAAAATATGAAAAA
37465333 ATTA-TTTAAAATATGAAAAA
1 ATTATTTTAAAATATGAAAAA
37465353 A
1 A
37465354 ATAAGTGTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 7 0.37
19 6 0.32
20 6 0.32
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (21 bp):
ATTATTTTAAAATATGAAAAA
Found at i:37468690 original size:101 final size:102
Alignment explanation
Indices: 37468561--37468745 Score: 302
Period size: 101 Copynumber: 1.8 Consensus size: 102
37468551 AAAGGGATGG
* *
37468561 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAATGAT-A-GGTCGCATGTGTAGT
1 TCACATGTGTAGTACTATGTGCAAGCTACTACGTGTACCGG-ATGATAATGGTCACATGTGTAGT
37468624 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCAA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGTTTCAA
* * *
37468662 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTATCGGATGGTAATGGTCACATGTGTAGTA
1 TCACATGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGATGATAATGGTCACATGTGTAGTA
37468727 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
37468746 TGAACCGAAC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
100 4 0.05
101 39 0.51
102 34 0.44
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (102 bp):
TCACATGTGTAGTACTATGTGCAAGCTACTACGTGTACCGGATGATAATGGTCACATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGTTTCAA
Found at i:37468691 original size:51 final size:51
Alignment explanation
Indices: 37468561--37468745 Score: 205
Period size: 51 Copynumber: 3.6 Consensus size: 51
37468551 AAAGGGATGG
* * * *
37468561 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-A-TGATAGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAATA-A
* *
37468611 TCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGT-TTCAA
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAAT-AA
* * * * * * **
37468662 TCACGTGTGTAGTACTATGTGCAAGCTACTACGTGTATCGGATGGTAATGG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAATAA
37468713 TCACATGTGTAGTACTATGTGCAGGCTACTATG
1 TCACATGTGTAGTACTATGTGCAGGCTACTATG
37468746 TGAACCGAAC
Statistics
Matches: 113, Mismatches: 18, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
50 39 0.35
51 71 0.63
52 3 0.03
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (51 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGATAGTAATAA
Found at i:37471528 original size:50 final size:50
Alignment explanation
Indices: 37471474--37471585 Score: 208
Period size: 50 Copynumber: 2.3 Consensus size: 50
37471464 CATTCAAAAT
37471474 TAACCATTCAAGAGCATCAAACACTTAACAAGACACATATACATATCATA
1 TAACCATTCAAGAGCATCAAACACTTAACAAGACACATATACATATCATA
*
37471524 TAACCATTCAAGAGCTTCAAACACTTAACAAGACACATATACATATCATA
1 TAACCATTCAAGAGCATCAAACACTTAACAAGACACATATACATATCATA
37471574 TAACCA-TCAAGA
1 TAACCATTCAAGA
37471586 ACAAGTATTA
Statistics
Matches: 61, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
49 6 0.10
50 55 0.90
ACGTcount: A:0.47, C:0.24, G:0.06, T:0.22
Consensus pattern (50 bp):
TAACCATTCAAGAGCATCAAACACTTAACAAGACACATATACATATCATA
Found at i:37471945 original size:15 final size:14
Alignment explanation
Indices: 37471919--37471948 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
37471909 ATATAGCTAT
37471919 CAATTCATTCAGTA
1 CAATTCATTCAGTA
37471933 CAATTCAATTCAGTA
1 CAATTC-ATTCAGTA
37471948 C
1 C
37471949 CATTTCATCA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (14 bp):
CAATTCATTCAGTA
Found at i:37472196 original size:22 final size:20
Alignment explanation
Indices: 37472175--37472251 Score: 82
Period size: 20 Copynumber: 3.8 Consensus size: 20
37472165 CTGAGTAGTA
*
37472175 GGCACCGAAGTGCGAATCAGT
1 GGCACCGAAGTGC-AAACAGT
** *
37472196 AAACACCGAAATGCAAACAGT
1 -GGCACCGAAGTGCAAACAGT
*
37472217 GGCACCAAAGTGCAAACAGT
1 GGCACCGAAGTGCAAACAGT
*
37472237 GGCATCGAAGTGCAA
1 GGCACCGAAGTGCAA
37472252 TCTCATACAA
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 29 0.64
21 6 0.13
22 10 0.22
ACGTcount: A:0.39, C:0.23, G:0.26, T:0.12
Consensus pattern (20 bp):
GGCACCGAAGTGCAAACAGT
Found at i:37473220 original size:22 final size:20
Alignment explanation
Indices: 37473184--37473242 Score: 57
Period size: 21 Copynumber: 2.8 Consensus size: 20
37473174 GACCCGATCC
37473184 ATTT-TTTTAATAAATACCAAAA
1 ATTTATTTTAA-AAATA--AAAA
37473206 ATTTATTTTAAAAATTAAAAA
1 ATTTATTTTAAAAA-TAAAAA
**
37473227 AAATATTTTAAAAATA
1 ATTTATTTTAAAAATA
37473243 TTTTAAAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 2 0.06
21 16 0.48
22 7 0.21
23 8 0.24
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (20 bp):
ATTTATTTTAAAAATAAAAA
Found at i:37473273 original size:39 final size:39
Alignment explanation
Indices: 37473215--37473348 Score: 205
Period size: 41 Copynumber: 3.3 Consensus size: 39
37473205 AATTTATTTT
*
37473215 AAAAATTAAAAAAAATATTTTAAAAATATTTTAAAATTAA
1 AAAAATT-AAAAAAGTATTTTAAAAATATTTTAAAATTAA
*
37473255 AAAAATTTAAAAAGTATTTTAAAAATATTTTAAAATTAAA
1 AAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATT-AA
*
37473295 AAATAATAAAAAAAGTATTTTAAAAATATTTTAAAATTAA
1 AAA-AATTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
37473335 AAAAATTTAAAAAA
1 AAAAA-TTAAAAAA
37473349 TAAATATATT
Statistics
Matches: 86, Mismatches: 5, Indels: 6
0.89 0.05 0.06
Matches are distributed among these distances:
39 30 0.35
40 24 0.28
41 32 0.37
ACGTcount: A:0.64, C:0.00, G:0.01, T:0.34
Consensus pattern (39 bp):
AAAAATTAAAAAAGTATTTTAAAAATATTTTAAAATTAA
Found at i:37473277 original size:12 final size:11
Alignment explanation
Indices: 37473225--37473330 Score: 79
Period size: 11 Copynumber: 10.4 Consensus size: 11
37473215 AAAAATTAAA
37473225 AAAAATATTTT
1 AAAAATATTTT
37473236 AAAAATATTTT
1 AAAAATATTTT
37473247 --AAA-A--TT
1 AAAAATATTTT
*
37473253 AAAAA-AATTT
1 AAAAATATTTT
37473263 AAAAAGTATTTT
1 AAAAA-TATTTT
37473275 AAAAATATTTT
1 AAAAATATTTT
*
37473286 --AAA-A-TTA
1 AAAAATATTTT
* **
37473293 AAAAATAATAA
1 AAAAATATTTT
37473304 AAAAAGTATTTT
1 AAAAA-TATTTT
37473316 AAAAATATTTT
1 AAAAATATTTT
37473327 AAAA
1 AAAA
37473331 TTAAAAAAAT
Statistics
Matches: 78, Mismatches: 6, Indels: 22
0.74 0.06 0.21
Matches are distributed among these distances:
6 2 0.03
7 2 0.03
8 6 0.08
9 9 0.12
10 8 0.10
11 34 0.44
12 17 0.22
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:37473336 original size:17 final size:17
Alignment explanation
Indices: 37473314--37473360 Score: 58
Period size: 17 Copynumber: 2.8 Consensus size: 17
37473304 AAAAAGTATT
*
37473314 TTAAAAATATTTTAAAA
1 TTAAAAATATTTAAAAA
*
37473331 TTAAAAAAATTTAAAAA
1 TTAAAAATATTTAAAAA
* *
37473348 ATAAATATATTTA
1 TTAAAAATATTTA
37473361 TTATATCGGG
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (17 bp):
TTAAAAATATTTAAAAA
Found at i:37475293 original size:12 final size:13
Alignment explanation
Indices: 37475276--37475308 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
37475266 TTCCCTTTTA
37475276 TTTAACATAA-TT
1 TTTAACATAAGTT
37475288 TTTAAC-TAAGTT
1 TTTAACATAAGTT
37475300 TTTAACATA
1 TTTAACATA
37475309 TAAACAATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 3 0.16
12 14 0.74
13 2 0.11
ACGTcount: A:0.39, C:0.09, G:0.03, T:0.48
Consensus pattern (13 bp):
TTTAACATAAGTT
Found at i:37475571 original size:29 final size:29
Alignment explanation
Indices: 37475536--37475591 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
37475526 ACAAATGTTT
*
37475536 ACTAAAAATATTTACAAGCTCAGTTTATA
1 ACTAAAAATAATTACAAGCTCAGTTTATA
*
37475565 ACTAAAAATAATTACAAGCTTAGTTTA
1 ACTAAAAATAATTACAAGCTCAGTTTA
37475592 CATAAATAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.46, C:0.12, G:0.07, T:0.34
Consensus pattern (29 bp):
ACTAAAAATAATTACAAGCTCAGTTTATA
Done.