Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 123 of 173
Found at i:37779627 original size:14 final size:14
Alignment explanation
Indices: 37779597--37779644 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
37779587 GAGCTCAAAA
*
37779597 TATTTTCTTT-CTT
1 TATTTTCTTTATTT
37779610 TATTTTCTTTATTT
1 TATTTTCTTTATTT
*
37779624 TATTTACTTTAATTT
1 TATTTTCTTT-ATTT
*
37779639 CATTTT
1 TATTTT
37779645 TTATAGTTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
13 10 0.34
14 11 0.38
15 8 0.28
ACGTcount: A:0.17, C:0.10, G:0.00, T:0.73
Consensus pattern (14 bp):
TATTTTCTTTATTT
Found at i:37783306 original size:23 final size:23
Alignment explanation
Indices: 37783276--37783322 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
37783266 CCAAAAAGAA
37783276 AGGTCTGCCATTAATGAGAGCTG
1 AGGTCTGCCATTAATGAGAGCTG
37783299 AGGTCTGCCATTAATGAGAGCTG
1 AGGTCTGCCATTAATGAGAGCTG
37783322 A
1 A
37783323 AGGTACGACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (23 bp):
AGGTCTGCCATTAATGAGAGCTG
Found at i:37794436 original size:56 final size:56
Alignment explanation
Indices: 37794350--37794463 Score: 219
Period size: 56 Copynumber: 2.0 Consensus size: 56
37794340 CAAAACTTTA
37794350 AATACAATTTTCATTTATATTATTGTACATTCAACTAACCATGTAGTTTAGATTCT
1 AATACAATTTTCATTTATATTATTGTACATTCAACTAACCATGTAGTTTAGATTCT
*
37794406 AATACAATTTTCATTTATATTATTGTACATTCAGCTAACCATGTAGTTTAGATTCT
1 AATACAATTTTCATTTATATTATTGTACATTCAACTAACCATGTAGTTTAGATTCT
37794462 AA
1 AA
37794464 CTTATATTAG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 57 1.00
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.44
Consensus pattern (56 bp):
AATACAATTTTCATTTATATTATTGTACATTCAACTAACCATGTAGTTTAGATTCT
Found at i:37794847 original size:18 final size:19
Alignment explanation
Indices: 37794824--37794871 Score: 62
Period size: 21 Copynumber: 2.5 Consensus size: 19
37794814 AACTCTTAAT
37794824 TTATAACCCTA-AAACATA
1 TTATAACCCTATAAACATA
37794842 TTATAACCCTATTGAAACATA
1 TTATAACCCTA-T-AAACATA
*
37794863 TTTTAACCC
1 TTATAACCC
37794872 CTTAAATATC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
18 11 0.42
21 15 0.58
ACGTcount: A:0.42, C:0.23, G:0.02, T:0.33
Consensus pattern (19 bp):
TTATAACCCTATAAACATA
Found at i:37794907 original size:19 final size:17
Alignment explanation
Indices: 37794881--37794924 Score: 61
Period size: 19 Copynumber: 2.5 Consensus size: 17
37794871 CCTTAAATAT
37794881 CTAAAACCTTTCAAACC
1 CTAAAACCTTTCAAACC
*
37794898 TCTCAAAACCTTTTAAACC
1 -CT-AAAACCTTTCAAACC
37794917 CTAAAACC
1 CTAAAACC
37794925 CTATTCCTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 6 0.25
18 4 0.17
19 14 0.58
ACGTcount: A:0.41, C:0.34, G:0.00, T:0.25
Consensus pattern (17 bp):
CTAAAACCTTTCAAACC
Found at i:37803693 original size:25 final size:26
Alignment explanation
Indices: 37803658--37803708 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
37803648 GAGTCATCAT
*
37803658 TGGGTAGCTCCGAAGAGCCATTTATC
1 TGGGTAGCTCCGAAGAGCCATATATC
*
37803684 TGGG-AGCTCCGAATAGCCATATATC
1 TGGGTAGCTCCGAAGAGCCATATATC
37803709 AGGAAGTTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (26 bp):
TGGGTAGCTCCGAAGAGCCATATATC
Found at i:37804247 original size:21 final size:21
Alignment explanation
Indices: 37804222--37804265 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
37804212 TAAATTTAAC
* * *
37804222 TTAATTTAATGAAATTCATAT
1 TTAATTCAATCAAATTCAAAT
37804243 TTAATTCAATCAAATTCAAAT
1 TTAATTCAATCAAATTCAAAT
37804264 TT
1 TT
37804266 TAGGCGGAAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.45
Consensus pattern (21 bp):
TTAATTCAATCAAATTCAAAT
Found at i:37807177 original size:12 final size:12
Alignment explanation
Indices: 37807160--37807196 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
37807150 GCAATAAATG
37807160 AGTCATCAGAGA
1 AGTCATCAGAGA
37807172 AGTCATCAGAGA
1 AGTCATCAGAGA
* *
37807184 AGTTATCATAGA
1 AGTCATCAGAGA
37807196 A
1 A
37807197 AATCCTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.43, C:0.14, G:0.22, T:0.22
Consensus pattern (12 bp):
AGTCATCAGAGA
Found at i:37815107 original size:27 final size:27
Alignment explanation
Indices: 37815072--37815174 Score: 145
Period size: 27 Copynumber: 3.8 Consensus size: 27
37815062 ATCTGCATCG
* *
37815072 ATACCCTCATAAGGTAAAATGATCGAA
1 ATACCCCCATAGGGTAAAATGATCGAA
* *
37815099 ATATCCTCATAGGGTAAAATGA-CTGAA
1 ATACCCCCATAGGGTAAAATGATC-GAA
*
37815126 ATACCCCCATAGGGTAGAATGATCGAA
1 ATACCCCCATAGGGTAAAATGATCGAA
37815153 ATACCCCCATAGGGTAAAATGA
1 ATACCCCCATAGGGTAAAATGA
37815175 CTGTTATACC
Statistics
Matches: 68, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 1 0.01
27 66 0.97
28 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.21
Consensus pattern (27 bp):
ATACCCCCATAGGGTAAAATGATCGAA
Found at i:37815154 original size:54 final size:54
Alignment explanation
Indices: 37815072--37815186 Score: 167
Period size: 54 Copynumber: 2.1 Consensus size: 54
37815062 ATCTGCATCG
* * *
37815072 ATACCCTCATAAGGTAAAATGATCGAAATATCCTCATAGGGTAAAATGACTGAA
1 ATACCCCCATAAGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACTGAA
* * **
37815126 ATACCCCCATAGGGTAGAATGATCGAAATACCCCCATAGGGTAAAATGACTGTT
1 ATACCCCCATAAGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACTGAA
37815180 ATACCCC
1 ATACCCC
37815187 TAGGAGATGA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (54 bp):
ATACCCCCATAAGGTAAAATGATCGAAATACCCCCATAGGGTAAAATGACTGAA
Found at i:37815183 original size:27 final size:27
Alignment explanation
Indices: 37815072--37815186 Score: 135
Period size: 27 Copynumber: 4.3 Consensus size: 27
37815062 ATCTGCATCG
* *
37815072 ATACCCTCATAAGGTAAAATGA-TCGAA
1 ATACCCCCATAGGGTAAAATGACT-GAA
* *
37815099 ATATCCTCATAGGGTAAAATGACTGAA
1 ATACCCCCATAGGGTAAAATGACTGAA
*
37815126 ATACCCCCATAGGGTAGAATGA-TCGAA
1 ATACCCCCATAGGGTAAAATGACT-GAA
**
37815153 ATACCCCCATAGGGTAAAATGACTGTT
1 ATACCCCCATAGGGTAAAATGACTGAA
37815180 ATACCCC
1 ATACCCC
37815187 TAGGAGATGA
Statistics
Matches: 77, Mismatches: 8, Indels: 6
0.85 0.09 0.07
Matches are distributed among these distances:
26 1 0.01
27 74 0.96
28 2 0.03
ACGTcount: A:0.38, C:0.22, G:0.17, T:0.23
Consensus pattern (27 bp):
ATACCCCCATAGGGTAAAATGACTGAA
Found at i:37815789 original size:27 final size:27
Alignment explanation
Indices: 37815558--37815779 Score: 266
Period size: 27 Copynumber: 8.2 Consensus size: 27
37815548 GGCGGTCAAT
* * **
37815558 AAATGATCAAAATACCTTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
37815585 AAATGACAGAAATACCCCTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * * *
37815612 AAATGATCGAGATGCCCCTATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* * *
37815639 AAATGATCAAAATACCCTCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
* *
37815666 AAATGA-TGAAAATACCCTCATAGGGTA
1 AAATGACCG-AAATACCCCCATAGGGTA
* *
37815693 AAATGACCGAAATACCCCTATAAGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
37815720 AAATGACCGAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
*
37815747 AAATGACCAAAATACCCCCATAGGGTA
1 AAATGACCGAAATACCCCCATAGGGTA
37815774 AAATGA
1 AAATGA
37815780 TTGTTATACC
Statistics
Matches: 169, Mismatches: 24, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
27 168 0.99
28 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.18, T:0.20
Consensus pattern (27 bp):
AAATGACCGAAATACCCCCATAGGGTA
Found at i:37815789 original size:81 final size:80
Alignment explanation
Indices: 37815558--37815780 Score: 320
Period size: 81 Copynumber: 2.8 Consensus size: 80
37815548 GGCGGTCAAT
* * *
37815558 AAATGATCAAAATACCTTCATAGGGTAAAATGACAGAAATACCCCTATAGGGTAAAATGATCGAG
1 AAATGATCAAAATACCCTCATAGGGTAAAATGACA-AAATACCCCCATAGGGTAAAATGATCGAA
* *
37815623 ATGCCCCTATAGGGTA
65 ATACCCCTATAAGGTA
* * *
37815639 AAATGATCAAAATACCCTCATAGGGTAAAATGATGAAAATACCCTCATAGGGTAAAATGACCGAA
1 AAATGATCAAAATACCCTCATAGGGTAAAATGA-CAAAATACCCCCATAGGGTAAAATGATCGAA
37815704 ATACCCCTATAAGGTA
65 ATACCCCTATAAGGTA
* * *
37815720 AAATGACCGAAATACCCCCATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAAATGAT
1 AAATGATCAAAATACCCTCATAGGGTAAAATGA-CAAAATACCCCCATAGGGTAAAATGAT
37815781 TGTTATACCT
Statistics
Matches: 126, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
81 125 0.99
82 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.20
Consensus pattern (80 bp):
AAATGATCAAAATACCCTCATAGGGTAAAATGACAAAATACCCCCATAGGGTAAAATGATCGAAA
TACCCCTATAAGGTA
Found at i:37815805 original size:81 final size:79
Alignment explanation
Indices: 37815558--37815807 Score: 259
Period size: 81 Copynumber: 3.1 Consensus size: 79
37815548 GGCGGTCAAT
* * * *
37815558 AAATGATCAAAATACCTTCATAGGGTAAAATGACAGAAATACCCCTATAGGGTAAAATGATCGAG
1 AAATGACCAAAATACCCTCATAGGGTAAAATGACA-AAATACCCCCATAGGGTAAAATGATCGAA
* *
37815623 ATGCCCCTATAGG-GTA
65 AT--ACCTCTAGGAGTA
* * * *
37815639 AAATGATCAAAATACCCTCATAGGGTAAAATGATGAAAATACCCTCATAGGGTAAAATGACCGAA
1 AAATGACCAAAATACCCTCATAGGGTAAAATGA-CAAAATACCCCCATAGGGTAAAATGATCGAA
* **
37815704 ATACCCCTATAAGGTA
65 ATACCTCTAGGA-GTA
* * * **
37815720 AAATGACCGAAATACCCCCATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAAATGATTGTT
1 AAATGACCAAAATACCCTCATAGGGTAAAATGA-CAAAATACCCCCATAGGGTAAAATGATCGAA
*
37815785 ATACCTCTAGGAGATG
65 ATACCTCTAGGAG-TA
37815801 AAATGAC
1 AAATGAC
37815808 TGTTATGGCC
Statistics
Matches: 140, Mismatches: 25, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
79 4 0.03
80 1 0.01
81 134 0.96
82 1 0.01
ACGTcount: A:0.42, C:0.19, G:0.18, T:0.21
Consensus pattern (79 bp):
AAATGACCAAAATACCCTCATAGGGTAAAATGACAAAATACCCCCATAGGGTAAAATGATCGAAA
TACCTCTAGGAGTA
Found at i:37816155 original size:28 final size:28
Alignment explanation
Indices: 37816115--37816258 Score: 157
Period size: 28 Copynumber: 5.2 Consensus size: 28
37816105 CATTGTACTG
*
37816115 TTACTGTATTGGGCTAAGGCCCACATTA
1 TTACTGTATTGGGCTAAGGCCCACACTA
* *
37816143 TTACTGTACTGGGATAAGGCCCACACTA
1 TTACTGTATTGGGCTAAGGCCCACACTA
* * *
37816171 TTACTTTATTAGGTTAAGGCCCACACTA
1 TTACTGTATTGGGCTAAGGCCCACACTA
* * * ** *
37816199 TTAATTTATTGGGCTAAAGTTCACACTG
1 TTACTGTATTGGGCTAAGGCCCACACTA
*
37816227 TTACTGTATCGGGC-AAGGCCCACACTA
1 TTACTGTATTGGGCTAAGGCCCACACTA
37816254 -TACTG
1 TTACTG
37816259 ATGCTGAATA
Statistics
Matches: 95, Mismatches: 21, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
26 5 0.05
27 9 0.09
28 81 0.85
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.31
Consensus pattern (28 bp):
TTACTGTATTGGGCTAAGGCCCACACTA
Found at i:37816893 original size:21 final size:21
Alignment explanation
Indices: 37816860--37816904 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
37816850 AATTTAACTC
* * *
37816860 AATTTAATGAAATTCATATTT
1 AATTCAATCAAATTCACATTT
37816881 AATTCAATCAAATTCACATTT
1 AATTCAATCAAATTCACATTT
37816902 AAT
1 AAT
37816905 CCTTATTTAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.44, C:0.11, G:0.02, T:0.42
Consensus pattern (21 bp):
AATTCAATCAAATTCACATTT
Found at i:37816916 original size:11 final size:11
Alignment explanation
Indices: 37816898--37816922 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
37816888 TCAAATTCAC
37816898 ATTTAATCCTT
1 ATTTAATCCTT
37816909 ATTTAATCCTT
1 ATTTAATCCTT
37816920 ATT
1 ATT
37816923 CCAAGCGTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.28, C:0.16, G:0.00, T:0.56
Consensus pattern (11 bp):
ATTTAATCCTT
Found at i:37818657 original size:14 final size:13
Alignment explanation
Indices: 37818629--37818665 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 13
37818619 AAGCTTATTA
*
37818629 TTTTCCTTTTTTC
1 TTTTCTTTTTTTC
37818642 TTTTCTTTTGTTTC
1 TTTTCTTTT-TTTC
37818656 TTTTCTTTTT
1 TTTTCTTTTT
37818666 CAACCCTAGT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 9 0.41
14 13 0.59
ACGTcount: A:0.00, C:0.16, G:0.03, T:0.81
Consensus pattern (13 bp):
TTTTCTTTTTTTC
Found at i:37820159 original size:109 final size:109
Alignment explanation
Indices: 37820021--37820224 Score: 309
Period size: 109 Copynumber: 1.9 Consensus size: 109
37820011 GTGAGCTGGG
* * *
37820021 AATTTGATTTACACATTTCAAAGGCTACACCATGAACATTCATACAGGCATATCTTGCCATGCGT
1 AATTCGATTAACACATTTCAAAGGCTACACCATGAACATTCATACAGACATATCTTGCCATGCGT
*
37820086 TTTAACCACATGGTCTTACACACATTCATGTATCATGATCTTCC
66 CTTAACCACATGGTCTTACACACATTCATGTATCATGATCTTCC
** * * *
37820130 AATTCGATTAACACATTTTGAAGGCTACACCATGAACATTCATATAGACATATCTTTCCATGGGT
1 AATTCGATTAACACATTTCAAAGGCTACACCATGAACATTCATACAGACATATCTTGCCATGCGT
* *
37820195 CTTGACTACATGGTCTTACACACATTCATG
66 CTTAACCACATGGTCTTACACACATTCATG
37820225 AATTGTGATA
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
109 84 1.00
ACGTcount: A:0.31, C:0.24, G:0.13, T:0.33
Consensus pattern (109 bp):
AATTCGATTAACACATTTCAAAGGCTACACCATGAACATTCATACAGACATATCTTGCCATGCGT
CTTAACCACATGGTCTTACACACATTCATGTATCATGATCTTCC
Found at i:37822689 original size:27 final size:27
Alignment explanation
Indices: 37822649--37822721 Score: 85
Period size: 27 Copynumber: 2.7 Consensus size: 27
37822639 CAAATTATCA
*
37822649 CCACGAGGGATATTCTTTCAGAGATTT-
1 CCACGAAGGATATTCTTTCAGA-ATTTG
* *
37822676 CCACGAAGGCTATTCTTTCATAATTTG
1 CCACGAAGGATATTCTTTCAGAATTTG
* *
37822703 CCACAAAGGTTATTCTTTC
1 CCACGAAGGATATTCTTTC
37822722 CTTTCGTGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 4 0.10
27 36 0.90
ACGTcount: A:0.26, C:0.22, G:0.16, T:0.36
Consensus pattern (27 bp):
CCACGAAGGATATTCTTTCAGAATTTG
Found at i:37826295 original size:18 final size:18
Alignment explanation
Indices: 37826273--37826321 Score: 55
Period size: 18 Copynumber: 2.7 Consensus size: 18
37826263 TATATTAAAT
37826273 GAAAAAATGTGATTTTTAA
1 GAAAAAATGTGA-TTTTAA
* *
37826292 -AAAAAAAGTTATTTTAA
1 GAAAAAATGTGATTTTAA
37826309 GAATAAAATGTGA
1 GAA-AAAATGTGA
37826322 AATTGATATC
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
17 6 0.25
18 11 0.46
19 7 0.29
ACGTcount: A:0.53, C:0.00, G:0.14, T:0.33
Consensus pattern (18 bp):
GAAAAAATGTGATTTTAA
Found at i:37829785 original size:18 final size:21
Alignment explanation
Indices: 37829743--37829790 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
37829733 TTACATTTCA
*
37829743 TTTAATTTTGTTTATGAATTC
1 TTTAATTTTGTATATGAATTC
37829764 TTTAATTTT-TATA-GAATT-
1 TTTAATTTTGTATATGAATTC
37829782 TTTAGATTT
1 TTTA-ATTT
37829791 AAAAAAAAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 4 0.16
19 9 0.36
20 3 0.12
21 9 0.36
ACGTcount: A:0.27, C:0.02, G:0.08, T:0.62
Consensus pattern (21 bp):
TTTAATTTTGTATATGAATTC
Found at i:37829790 original size:19 final size:18
Alignment explanation
Indices: 37829753--37829790 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
37829743 TTTAATTTTG
37829753 TTTATGAATTCTTTAATT
1 TTTATGAATTCTTTAATT
37829771 TTTATAGAATT-TTTAGATT
1 TTTAT-GAATTCTTTA-ATT
37829790 T
1 T
37829791 AAAAAAAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.29, C:0.03, G:0.08, T:0.61
Consensus pattern (18 bp):
TTTATGAATTCTTTAATT
Found at i:37836063 original size:5 final size:5
Alignment explanation
Indices: 37836053--37836078 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
37836043 TGAGCATTCG
37836053 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
37836079 AATTTTGGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:37836554 original size:9 final size:9
Alignment explanation
Indices: 37836540--37836568 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
37836530 TAAACAATTC
37836540 AATAATATA
1 AATAATATA
37836549 AATAATATA
1 AATAATATA
37836558 AATAATATA
1 AATAATATA
37836567 AA
1 AA
37836569 ATGTGAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (9 bp):
AATAATATA
Found at i:37837107 original size:9 final size:9
Alignment explanation
Indices: 37837093--37837129 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
37837083 TATAGTTTGA
37837093 TATTCGAAT
1 TATTCGAAT
37837102 TATTCGAAT
1 TATTCGAAT
*
37837111 TATTCGAGT
1 TATTCGAAT
37837120 TATTCGAAT
1 TATTCGAAT
37837129 T
1 T
37837130 TGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:37837199 original size:9 final size:9
Alignment explanation
Indices: 37837182--37837212 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
37837172 TCGAGTTGAT
37837182 TCGAATAAC
1 TCGAATAAC
*
37837191 TCGATTAAC
1 TCGAATAAC
37837200 TCGAATAAC
1 TCGAATAAC
37837209 TCGA
1 TCGA
37837213 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:37838994 original size:11 final size:11
Alignment explanation
Indices: 37838978--37839003 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
37838968 ATTTTTAAAT
37838978 AAAAAATATTA
1 AAAAAATATTA
37838989 AAAAAATATTA
1 AAAAAATATTA
37839000 AAAA
1 AAAA
37839004 CGAGAGAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (11 bp):
AAAAAATATTA
Found at i:37843253 original size:15 final size:15
Alignment explanation
Indices: 37843229--37843258 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
37843219 AGAATTTTTT
*
37843229 ATATATATTTTAAAA
1 ATATAAATTTTAAAA
37843244 ATATAAATTTTAAAA
1 ATATAAATTTTAAAA
37843259 TTTTGATAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (15 bp):
ATATAAATTTTAAAA
Found at i:37844330 original size:54 final size:54
Alignment explanation
Indices: 37844271--37844373 Score: 197
Period size: 54 Copynumber: 1.9 Consensus size: 54
37844261 TAACGTCTAG
*
37844271 ATTCAACGTGGACAAATGGTTGTTAAAATTCAATTAAGTCTGGATAACCTAAAC
1 ATTCAACGTGGACAAATGGTTGTTAAAATTCAATTAAGTCTGGACAACCTAAAC
37844325 ATTCAACGTGGACAAATGGTTGTTAAAATTCAATTAAGTCTGGACAACC
1 ATTCAACGTGGACAAATGGTTGTTAAAATTCAATTAAGTCTGGACAACC
37844374 ATTTGTTTAG
Statistics
Matches: 48, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.38, C:0.16, G:0.17, T:0.29
Consensus pattern (54 bp):
ATTCAACGTGGACAAATGGTTGTTAAAATTCAATTAAGTCTGGACAACCTAAAC
Found at i:37844582 original size:20 final size:20
Alignment explanation
Indices: 37844553--37844590 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37844543 ATATTTGAAG
*
37844553 TATAAAAAATTATTAAAAAC
1 TATAAAAAATTAATAAAAAC
*
37844573 TATAAGAAATTAATAAAA
1 TATAAAAAATTAATAAAA
37844591 TATGATTTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (20 bp):
TATAAAAAATTAATAAAAAC
Found at i:37850950 original size:18 final size:17
Alignment explanation
Indices: 37850917--37850951 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
37850907 GGCTTGGGAA
*
37850917 AAAAATTATTGGGTTGG
1 AAAAATTATTGAGTTGG
37850934 AAAAATTATATGAGTTGG
1 AAAAATTAT-TGAGTTGG
37850952 TTTGAGACTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.40, C:0.00, G:0.26, T:0.34
Consensus pattern (17 bp):
AAAAATTATTGAGTTGG
Found at i:37855236 original size:57 final size:57
Alignment explanation
Indices: 37855171--37855471 Score: 257
Period size: 57 Copynumber: 5.3 Consensus size: 57
37855161 TAAAATAACT
* * * *
37855171 TTCCACATATAAGATAATATTGACGGATTTCCCACATATAAGATAGTCTTGGTGGAC
1 TTCCACATTTAAGATAGTCTTGACGGATTTCCCACATATAAGATAGTCTTGGCGGAC
* * * * *
37855228 TTCTACATATACA-ATAGTCTTGGCGGACTTCTCGCACA-A-AAGATAGTCTTGGCGAAC
1 TTCCACATTTA-AGATAGTCTTGACGGA-TT-TCCCACATATAAGATAGTCTTGGCGGAC
* * * * * * ** *
37855285 TTCCACATTTACGATAGTCCTGATGGACTTCTCACATATAAGATAGTCCTCACAGAC
1 TTCCACATTTAAGATAGTCTTGACGGATTTCCCACATATAAGATAGTCTTGGCGGAC
* * ** * * * * *
37855342 TTCCACATTTATGATAGTGTTGACAAACTTCCTATATATAAGATAGTCTTAGTGGAC
1 TTCCACATTTAAGATAGTCTTGACGGATTTCCCACATATAAGATAGTCTTGGCGGAC
* * * * *
37855399 TTCCACATTTATGATAGCCCTGACGGGTTTCCCACATATAAGATAGTCTTGGCGAAC
1 TTCCACATTTAAGATAGTCTTGACGGATTTCCCACATATAAGATAGTCTTGGCGGAC
*
37855456 TTCCACATTTACGATA
1 TTCCACATTTAAGATA
37855472 ATGCCATGAC
Statistics
Matches: 191, Mismatches: 47, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
55 6 0.03
56 2 0.01
57 173 0.91
58 4 0.02
59 6 0.03
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.32
Consensus pattern (57 bp):
TTCCACATTTAAGATAGTCTTGACGGATTTCCCACATATAAGATAGTCTTGGCGGAC
Found at i:37855278 original size:29 final size:29
Alignment explanation
Indices: 37855203--37855332 Score: 99
Period size: 28 Copynumber: 4.5 Consensus size: 29
37855193 ACGGATTTCC
*
37855203 CACATATAAGATAGTCTTGGTGGACTTCTA
1 CACATA-AAGATAGTCTTGGCGGACTTCTA
* * *
37855233 CATATACA-ATAGTCTTGGCGGACTTCTCG
1 CACATAAAGATAGTCTTGGCGGACTTCT-A
*
37855262 CACA-AAAGATAGTCTTGGCGAACTTC--
1 CACATAAAGATAGTCTTGGCGGACTTCTA
* * * **
37855288 CACATTTACGATAGTCCTGATGGACTTCT-
1 CACA-TAAAGATAGTCTTGGCGGACTTCTA
37855317 CACATATAAGATAGTC
1 CACATA-AAGATAGTC
37855333 CTCACAGACT
Statistics
Matches: 79, Mismatches: 15, Indels: 13
0.74 0.14 0.12
Matches are distributed among these distances:
26 4 0.05
28 37 0.47
29 33 0.42
30 5 0.06
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (29 bp):
CACATAAAGATAGTCTTGGCGGACTTCTA
Found at i:37855333 original size:29 final size:28
Alignment explanation
Indices: 37855171--37855463 Score: 203
Period size: 29 Copynumber: 10.3 Consensus size: 28
37855161 TAAAATAACT
* * *
37855171 TTCCACATATAAGATAATATTGACGGAT
1 TTCCACATATAAGATAGTCTTGACGGAC
**
37855199 TTCCCACATATAAGATAGTCTTGGTGGAC
1 TT-CCACATATAAGATAGTCTTGACGGAC
* *
37855228 TTCTACATATACA-ATAGTCTTGGCGGAC
1 TTCCACATATA-AGATAGTCTTGACGGAC
* * * * *
37855256 TTCTCGCACAAAAGATAGTCTTGGCGAAC
1 TTC-CACATATAAGATAGTCTTGACGGAC
* * * *
37855285 TTCCACATTTACGATAGTCCTGATGGAC
1 TTCCACATATAAGATAGTCTTGACGGAC
* * *
37855313 TTCTCACATATAAGATAGTCCTCACAGAC
1 TTC-CACATATAAGATAGTCTTGACGGAC
* * * **
37855342 TTCCACATTTATGATAGTGTTGACAAAC
1 TTCCACATATAAGATAGTCTTGACGGAC
* *
37855370 TTCCTATATATAAGATAGTCTT-AGTGGAC
1 TTCC-ACATATAAGATAGTCTTGA-CGGAC
* * * * **
37855399 TTCCACATTTATGATAGCCCTGACGGGT
1 TTCCACATATAAGATAGTCTTGACGGAC
* *
37855427 TTCCCACATATAAGATAGTCTTGGCGAAC
1 TT-CCACATATAAGATAGTCTTGACGGAC
37855456 TTCCACAT
1 TTCCACAT
37855464 TTACGATAAT
Statistics
Matches: 201, Mismatches: 55, Indels: 18
0.73 0.20 0.07
Matches are distributed among these distances:
28 93 0.46
29 108 0.54
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (28 bp):
TTCCACATATAAGATAGTCTTGACGGAC
Found at i:37855458 original size:114 final size:114
Alignment explanation
Indices: 37855191--37855471 Score: 298
Period size: 114 Copynumber: 2.5 Consensus size: 114
37855181 AAGATAATAT
* * * * * * **
37855191 TGACGGATTTCCCACATATAAGATAGTCTTGGTGGACTTCTACATATACAATAGTCTTGGCGGAC
1 TGACGGATTTCCCACATATAAGATAGTCTTGGCGAACTTCCACATTTACGATAGTCTTGACAAAC
* *
37855256 TTCTCGCACAAAAGATAGTCTTGGCGAACTTCCACATTTACGATAGTCC
66 TTCTCGCACAAAAGATAGTCTTAGCGAACTTCCACATTTACGATAGCCC
* * * * ** * *
37855305 TGATGGACTTCTCACATATAAGATAGTCCTCAC-AGACTTCCACATTTATGATAGTGTTGACAAA
1 TGACGGATTTCCCACATATAAGATAGTCTTGGCGA-ACTTCCACATTTACGATAGTCTTGACAAA
* * * * *
37855369 CTTC-C-TATATATAAGATAGTCTTAGTGGACTTCCACATTTATGATAGCCC
65 CTTCTCGCACA-A-AAGATAGTCTTAGCGAACTTCCACATTTACGATAGCCC
*
37855419 TGACGGGTTTCCCACATATAAGATAGTCTTGGCGAACTTCCACATTTACGATA
1 TGACGGATTTCCCACATATAAGATAGTCTTGGCGAACTTCCACATTTACGATA
37855472 ATGCCATGAC
Statistics
Matches: 132, Mismatches: 31, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
112 2 0.02
113 2 0.02
114 127 0.96
115 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.31
Consensus pattern (114 bp):
TGACGGATTTCCCACATATAAGATAGTCTTGGCGAACTTCCACATTTACGATAGTCTTGACAAAC
TTCTCGCACAAAAGATAGTCTTAGCGAACTTCCACATTTACGATAGCCC
Found at i:37856887 original size:6 final size:6
Alignment explanation
Indices: 37856846--37856870 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
37856836 AGCTTTCCTT
37856846 AAATGA AAATGA AAATGA AAATGA A
1 AAATGA AAATGA AAATGA AAATGA A
37856871 GCTGACCTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
AAATGA
Found at i:37858752 original size:21 final size:21
Alignment explanation
Indices: 37858726--37858766 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
37858716 AGAATTACAA
37858726 AAAAAAATCAAAATAATTTTC
1 AAAAAAATCAAAATAATTTTC
*
37858747 AAAAAATTCAAAATAATTTT
1 AAAAAAATCAAAATAATTTT
37858767 TAAATCTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.32
Consensus pattern (21 bp):
AAAAAAATCAAAATAATTTTC
Found at i:37863498 original size:21 final size:20
Alignment explanation
Indices: 37863424--37863499 Score: 82
Period size: 21 Copynumber: 3.8 Consensus size: 20
37863414 ATTTTCGAGG
*
37863424 ATATACAATCTTACATATG-
1 ATATACAATCTTAGATATGA
** *
37863443 ATATGTAATCTTAAATATGA
1 ATATACAATCTTAGATATGA
*
37863463 TATATGCAATCTTAGATATGA
1 -ATATACAATCTTAGATATGA
37863484 CATATACAATCTTAGA
1 -ATATACAATCTTAGA
37863500 AGATATGATT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 16 0.33
21 32 0.67
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.37
Consensus pattern (20 bp):
ATATACAATCTTAGATATGA
Found at i:37863535 original size:21 final size:23
Alignment explanation
Indices: 37863491--37863535 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
37863481 TGACATATAC
*
37863491 AATCTTAGAAGATATGATTTTGT
1 AATCTTAGAAGATATGAATTTGT
*
37863514 AATCTTA-AAGAT-TTAATTTGT
1 AATCTTAGAAGATATGAATTTGT
37863535 A
1 A
37863536 GATACCCTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 8 0.40
22 5 0.25
23 7 0.35
ACGTcount: A:0.38, C:0.04, G:0.13, T:0.44
Consensus pattern (23 bp):
AATCTTAGAAGATATGAATTTGT
Found at i:37863724 original size:19 final size:21
Alignment explanation
Indices: 37863700--37863738 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
37863690 TGTTTTCTTT
*
37863700 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
37863719 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
37863739 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:37863968 original size:3 final size:3
Alignment explanation
Indices: 37863960--37863999 Score: 55
Period size: 3 Copynumber: 13.3 Consensus size: 3
37863950 ATTAATTTTG
*
37863960 TTA TTA TTA TTG TTA TTA TTA -TA TTA TATA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA T
37864000 ACCTACATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 2 0.06
3 28 0.85
4 3 0.09
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:37863996 original size:15 final size:14
Alignment explanation
Indices: 37863960--37864000 Score: 50
Period size: 13 Copynumber: 3.0 Consensus size: 14
37863950 ATTAATTTTG
*
37863960 TTATTATTATTGTTA
1 TTATTATTATT-ATA
37863975 TTATTA-TATTATA
1 TTATTATTATTATA
37863988 -TATTATTATTATA
1 TTATTATTATTATA
37864001 CCTACATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
12 5 0.21
13 9 0.38
14 4 0.17
15 6 0.25
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.63
Consensus pattern (14 bp):
TTATTATTATTATA
Found at i:37870831 original size:132 final size:132
Alignment explanation
Indices: 37870594--37871388 Score: 1218
Period size: 132 Copynumber: 6.0 Consensus size: 132
37870584 ATGAAACACT
* *
37870594 AAGCCTTGTCTCCCTGAGCAACAGCGGAGTAGGTTGAAGATCGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * * *
37870659 TAGTGGAGTAGATTGAGGACGGA-AAATCTTATTTTTCCAAGATAGTGGGAAGCAGATTTTAGCC
66 TAGTGGAGCAGATCGAAGAC-GACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
37870723 ACC
130 ACC
* * *
37870726 AAGCCTTGTCTCCCTAAGCCGCAGCGGAGTAGGTTGAAGATTGTAAATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* *
37870791 TAGTAGAGAAGA-CTGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
66 TAGTGGAGCAGATC-GAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
37870855 ACC
130 ACC
* * *
37870858 AAGCCTTGTCTCCCTGAGCAACAGTGGAGTAGGCTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * *
37870923 TAGTGGAGCAGATCAAAGATGGA-AAATCTTATCTTTTCAAGATAGTGGGAAGCAGATTTAAGCC
66 TAGTGGAGCAGATCGAAGA-CGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCC
37870987 ACC
130 ACC
* *
37870990 AAGCCTTGTCTCCCTAAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCTTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * * * ** *
37871055 TAGTGAAGCAGATCAAAGACGACAAATCTTATCTTTTCAAGGTAGTGAAAAGTAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
37871120 CC
131 CC
*
37871122 AAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * *
37871187 TAGTGGAACAGATCGAAGACGGCAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
37871252 CC
131 CC
*
37871254 AAGCCTTGTCTCCCTGAGCAGTAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
1 AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
* * *
37871319 TAGTGTAGCAGATCGAAGACGAAAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTTAAGCCA
66 TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
*
37871384 GC
131 CC
37871386 AAG
1 AAG
37871389 TCTTATCCTC
Statistics
Matches: 603, Mismatches: 55, Indels: 10
0.90 0.08 0.01
Matches are distributed among these distances:
131 4 0.01
132 596 0.99
133 3 0.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (132 bp):
AAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCA
CC
Found at i:37870942 original size:44 final size:44
Alignment explanation
Indices: 37870894--37871073 Score: 100
Period size: 44 Copynumber: 4.1 Consensus size: 44
37870884 GAGTAGGCTG
*
37870894 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCA
1 AAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCA
* * ** **
37870938 AAGATGGAAAATCTTATCT-TTTCAAG-A-TAGTGGGAAGCAGATTT
1 AAGATTGAAGATCTTATCTCCCT-AAGCAGTAGT-GG-AGCAGATCA
** * * * * * * **
37870982 AAGCCA-CCAAG-CCTTGTCTCCCTAAGCAGCAGCGGAGTAGGTTG
1 AAG--ATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCA
* * *
37871026 AAGATTGTAGATCTTATCTCCTTAAGCAGTAGTGAAGCAGATCA
1 AAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCA
37871070 AAGA
1 AAGA
37871074 CGACAAATCT
Statistics
Matches: 94, Mismatches: 32, Indels: 20
0.64 0.22 0.14
Matches are distributed among these distances:
42 5 0.05
43 6 0.06
44 74 0.79
45 6 0.06
46 3 0.03
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (44 bp):
AAGATTGAAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCA
Found at i:37871205 original size:44 final size:44
Alignment explanation
Indices: 37871157--37871337 Score: 100
Period size: 44 Copynumber: 4.1 Consensus size: 44
37871147 GGAGTAGGTT
37871157 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATC
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATC
** * * ** * *
37871201 GAAGACGGCAAATCTTATCTTTCAAAG-A-TAGTGGGAAGCAGATT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGT-GGAA-CAGATC
* *** * * * * ** * *
37871245 TAAGCCA-CCAAG-CCTTGTCTCCCTGAGCAGTAGCGGAGTAGGTT
1 GAAG--ATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATC
* *
37871289 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGTAGCAGATC
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATC
37871333 GAAGA
1 GAAGA
37871338 CGAAAAATCT
Statistics
Matches: 94, Mismatches: 35, Indels: 16
0.65 0.24 0.11
Matches are distributed among these distances:
42 5 0.05
43 7 0.07
44 73 0.78
45 5 0.05
46 4 0.04
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (44 bp):
GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAACAGATC
Found at i:37871434 original size:44 final size:44
Alignment explanation
Indices: 37871386--37871470 Score: 136
Period size: 44 Copynumber: 1.9 Consensus size: 44
37871376 TTAAGCCAGC
37871386 AAGTCTTATC-CTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
1 AAGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
* *
37871430 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGC
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
37871471 ACGCATTCCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
44 37 0.97
45 1 0.03
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (44 bp):
AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
Found at i:37871713 original size:489 final size:489
Alignment explanation
Indices: 37871116--37872583 Score: 2873
Period size: 489 Copynumber: 3.0 Consensus size: 489
37871106 GTAGATTTAA
37871116 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
*
37871181 AAGCAGTAGTGGAACAGATCGAAGACGGCAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
66 AAGCAGTAGTGGAACAGATCGAAGACGGAAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
* *
37871246 AAGCCACCAAGCCTTGTCTCCCTGAGCAGTAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCC
131 AAGCCACCAAGCCTTGTCTCCTTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCC
*
37871311 CTAAGCAGTAGTGTAGCAGATCGAAGACGAAAAATCTTATCTTTCCAAGATAGTGGGAAGTAGAT
196 CTAAGCAGTAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGAT
*
37871376 TTAAGCCAGCAAGTCTTATCCTCCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAGTCTTATCT
261 TTAAGCCAGCAAGTCTTATCCTTCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAGTCTTATCT
*
37871441 CCCTGAAGTTGCAGTGGAGTAGATTGAAGCACGCATTCCTATACCTCTGAAGATGCAGTAGGATG
326 CCCTGAAGTTGCAGTGGAGTAGATTGAAGCACGAATTCCTATACCTCTGAAGATGCAGTAGGATG
37871506 AACATGGCTGCTTGAAGAAGAAGAGCACCAAGATCCAGCGTGACCGGGCAAAAATTGGTCATTTC
391 AACATGGCTGCTTGAAGAAGAAGAGCACCAAGATCCAGCGTGACCGGGCAAAAATTGGTCATTTC
37871571 TAAAGTCTTTGCTCTGTTCCTGTTACACGACAAT
456 TAAAGTCTTTGCTCTGTTCCTGTTACACGACAAT
37871605 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
37871670 AAGCAGTAGTGGAACAGATCGAAGACGGAAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
66 AAGCAGTAGTGGAACAGATCGAAGACGGAAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
37871735 AAGCCACCAAGCCTTGTCTCCTTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCC
131 AAGCCACCAAGCCTTGTCTCCTTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCC
37871800 CTAAGCAGTAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGAT
196 CTAAGCAGTAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGAT
37871865 TTAAGCCAGCAAGTCTTATCCTTCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAGTCTTATCT
261 TTAAGCCAGCAAGTCTTATCCTTCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAGTCTTATCT
37871930 CCCTGAAGTTGCAGTGGAGTAGATTGAAGCACGAATTCCTATACCTCTGAAGATGCAGTAGGATG
326 CCCTGAAGTTGCAGTGGAGTAGATTGAAGCACGAATTCCTATACCTCTGAAGATGCAGTAGGATG
37871995 AACATGGCTGCTTGAAGAAGAAGAGCACCAAGATCCAGCGTGACCGGGCAAAAATTGGTCATTTC
391 AACATGGCTGCTTGAAGAAGAAGAGCACCAAGATCCAGCGTGACCGGGCAAAAATTGGTCATTTC
37872060 TAAAGTCTTTGCTCTGTTCCTGTTACACGACAAT
456 TAAAGTCTTTGCTCTGTTCCTGTTACACGACAAT
37872094 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
37872159 AAGCAGTAGTGGAACAGATCGAAGACGGAAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
66 AAGCAGTAGTGGAACAGATCGAAGACGGAAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
37872224 AAGCCACCAAGCCTTGTCTCCTTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCC
131 AAGCCACCAAGCCTTGTCTCCTTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCC
37872289 CTAAGCAGTAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGAT
196 CTAAGCAGTAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGAT
37872354 TTAAGCCAGCAAGTCTTATCCTTCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAGTCTTATCT
261 TTAAGCCAGCAAGTCTTATCCTTCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAGTCTTATCT
37872419 CCCTGAAGTTGCAGTGGAGTAGATTGAAGCACGAATTCCTATACCTCTGAAGATGCAGTAGGATG
326 CCCTGAAGTTGCAGTGGAGTAGATTGAAGCACGAATTCCTATACCTCTGAAGATGCAGTAGGATG
*
37872484 AACATGGCTGCTTGAAGAAGAAGAGCACCAAGATCCAGCGTGACCGGGCAAAAATTGGCCATTTC
391 AACATGGCTGCTTGAAGAAGAAGAGCACCAAGATCCAGCGTGACCGGGCAAAAATTGGTCATTTC
37872549 TAAAGTCTTTGCTCTGTTCCTGTTACACGACAAT
456 TAAAGTCTTTGCTCTGTTCCTGTTACACGACAAT
37872583 G
1 G
37872584 AGCAAAGAGG
Statistics
Matches: 972, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
489 972 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (489 bp):
GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
AAGCAGTAGTGGAACAGATCGAAGACGGAAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
AAGCCACCAAGCCTTGTCTCCTTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCC
CTAAGCAGTAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGAT
TTAAGCCAGCAAGTCTTATCCTTCTGAAGTTGCAGTGGAGCAGATTAAAGCTATAAGTCTTATCT
CCCTGAAGTTGCAGTGGAGTAGATTGAAGCACGAATTCCTATACCTCTGAAGATGCAGTAGGATG
AACATGGCTGCTTGAAGAAGAAGAGCACCAAGATCCAGCGTGACCGGGCAAAAATTGGTCATTTC
TAAAGTCTTTGCTCTGTTCCTGTTACACGACAAT
Found at i:37871769 original size:132 final size:132
Alignment explanation
Indices: 37871605--37871877 Score: 467
Period size: 132 Copynumber: 2.1 Consensus size: 132
37871595 ACACGACAAT
*
37871605 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
37871670 AAGCAGTAGTGGAACAGATCGAAGACGGA-AAATCTTATCTTTCAAAGATAGTGGGAAGCAGATT
66 AAGCAGTAGTGGAACAGATCGAAGAC-GACAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATT
37871734 TAA
130 TAA
*
37871737 GCCACCAAGCCTTGTCTCCTTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
* * * *
37871802 AAGCAGTAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTT
66 AAGCAGTAGTGGAACAGATCGAAGACGACAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
37871867 AA
131 AA
*
37871869 GCCAGCAAG
1 GCCACCAAG
37871878 TCTTATCCTT
Statistics
Matches: 133, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
131 2 0.02
132 131 0.98
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (132 bp):
GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
AAGCAGTAGTGGAACAGATCGAAGACGACAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
AA
Found at i:37871923 original size:44 final size:44
Alignment explanation
Indices: 37871875--37871959 Score: 127
Period size: 44 Copynumber: 1.9 Consensus size: 44
37871865 TTAAGCCAGC
*
37871875 AAGTCTTATC-CTTCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
1 AAGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
* *
37871919 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGC
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
37871960 ACGAATTCCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 36 0.97
45 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (44 bp):
AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
Found at i:37871926 original size:132 final size:132
Alignment explanation
Indices: 37871605--37871933 Score: 387
Period size: 132 Copynumber: 2.5 Consensus size: 132
37871595 ACACGACAAT
* * * * * * *
37871605 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTATCTCCTTGAGCAGCAGCGGAGCAGATTAAAGATTGAAGATCTTATCTCCCT
37871670 AAGCAGTAGTGGAACAGATCGAAGACGGAAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
66 AAGCAGTAGTGGAACAGATCGAAGACGGAAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
37871735 AA
131 AA
* * * * *
37871737 GCCACCAAGCCTTGTCTCCTTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTATCTCCTTGAGCAGCAGCGGAGCAGATTAAAGATTGAAGATCTTATCTCCCT
* * * *
37871802 AAGCAGTAGTGTAGCAGATCGAAGAC-GACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATT
66 AAGCAGTAGTGGAACAGATCGAAGACGGA-AAATCTTATCTTTCAAAGATAGTGGGAAGCAGATT
37871866 TAA
130 TAA
* * * ** * *
37871869 GCCAGCAAGTCTTATC-CTTCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT-AAG-TCTTATCTC
1 GCCACCAAGCCTTATCTCCT-TG-AGCAGCAGCGGAGCAGATTAAAGAT-TGAAGATCTTATCTC
37871931 CCT
63 CCT
37871934 GAAGTTGCAG
Statistics
Matches: 175, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
131 4 0.02
132 150 0.86
133 20 0.11
134 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (132 bp):
GCCACCAAGCCTTATCTCCTTGAGCAGCAGCGGAGCAGATTAAAGATTGAAGATCTTATCTCCCT
AAGCAGTAGTGGAACAGATCGAAGACGGAAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
AA
Found at i:37871980 original size:44 final size:44
Alignment explanation
Indices: 37871861--37871988 Score: 109
Period size: 44 Copynumber: 2.9 Consensus size: 44
37871851 AGTGGGAAGT
* * *
37871861 AGATTTAAGCCAGCAAGTCTTATC-CTTCTGAAGTTGCAGTGGAGC
1 AGATTAAAGCTAG-AAGTCCTATCTC-TCTGAAGTTGCAGTGGAGC
* * * *
37871906 AGATTAAAGCTATAAGTCTTATCTCCCTGAAGTTGCAGTGGAGT
1 AGATTAAAGCTAGAAGTCCTATCTCTCTGAAGTTGCAGTGGAGC
* * *
37871950 AGATTGAAGC-ACGAATTCCTATAC-CTCTGAAGATGCAGT
1 AGATTAAAGCTA-GAAGTCCTAT-CTCTCTGAAGTTGCAGT
37871989 AGGATGAACA
Statistics
Matches: 69, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
43 1 0.01
44 56 0.81
45 12 0.17
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (44 bp):
AGATTAAAGCTAGAAGTCCTATCTCTCTGAAGTTGCAGTGGAGC
Found at i:37872258 original size:132 final size:132
Alignment explanation
Indices: 37872094--37872366 Score: 467
Period size: 132 Copynumber: 2.1 Consensus size: 132
37872084 ACACGACAAT
*
37872094 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
37872159 AAGCAGTAGTGGAACAGATCGAAGACGGA-AAATCTTATCTTTCAAAGATAGTGGGAAGCAGATT
66 AAGCAGTAGTGGAACAGATCGAAGAC-GACAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATT
37872223 TAA
130 TAA
*
37872226 GCCACCAAGCCTTGTCTCCTTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
* * * *
37872291 AAGCAGTAGTGTAGCAGATCGAAGACGACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATTT
66 AAGCAGTAGTGGAACAGATCGAAGACGACAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
37872356 AA
131 AA
*
37872358 GCCAGCAAG
1 GCCACCAAG
37872367 TCTTATCCTT
Statistics
Matches: 133, Mismatches: 7, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
131 2 0.02
132 131 0.98
ACGTcount: A:0.30, C:0.20, G:0.25, T:0.25
Consensus pattern (132 bp):
GCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
AAGCAGTAGTGGAACAGATCGAAGACGACAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
AA
Found at i:37872412 original size:44 final size:44
Alignment explanation
Indices: 37872364--37872448 Score: 127
Period size: 44 Copynumber: 1.9 Consensus size: 44
37872354 TTAAGCCAGC
*
37872364 AAGTCTTATC-CTTCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
1 AAGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
* *
37872408 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTGAAGC
1 AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC
37872449 ACGAATTCCT
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 36 0.97
45 1 0.03
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (44 bp):
AAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT
Found at i:37872415 original size:132 final size:132
Alignment explanation
Indices: 37872094--37872422 Score: 387
Period size: 132 Copynumber: 2.5 Consensus size: 132
37872084 ACACGACAAT
* * * * * * *
37872094 GCCACCAAGCCTTGTCTCCCTGAGTAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTATCTCCTTGAGCAGCAGCGGAGCAGATTAAAGATTGAAGATCTTATCTCCCT
37872159 AAGCAGTAGTGGAACAGATCGAAGACGGAAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
66 AAGCAGTAGTGGAACAGATCGAAGACGGAAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
37872224 AA
131 AA
* * * * *
37872226 GCCACCAAGCCTTGTCTCCTTGAGCAGCAGCGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCT
1 GCCACCAAGCCTTATCTCCTTGAGCAGCAGCGGAGCAGATTAAAGATTGAAGATCTTATCTCCCT
* * * *
37872291 AAGCAGTAGTGTAGCAGATCGAAGAC-GACAAATCTTATCTTTCCAAGATAGTGGGAAGTAGATT
66 AAGCAGTAGTGGAACAGATCGAAGACGGA-AAATCTTATCTTTCAAAGATAGTGGGAAGCAGATT
37872355 TAA
130 TAA
* * * ** * *
37872358 GCCAGCAAGTCTTATC-CTTCTGAAGTTGCAGTGGAGCAGATTAAAGCTAT-AAG-TCTTATCTC
1 GCCACCAAGCCTTATCTCCT-TG-AGCAGCAGCGGAGCAGATTAAAGAT-TGAAGATCTTATCTC
37872420 CCT
63 CCT
37872423 GAAGTTGCAG
Statistics
Matches: 175, Mismatches: 18, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
131 4 0.02
132 150 0.86
133 20 0.11
134 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (132 bp):
GCCACCAAGCCTTATCTCCTTGAGCAGCAGCGGAGCAGATTAAAGATTGAAGATCTTATCTCCCT
AAGCAGTAGTGGAACAGATCGAAGACGGAAAATCTTATCTTTCAAAGATAGTGGGAAGCAGATTT
AA
Found at i:37872469 original size:44 final size:44
Alignment explanation
Indices: 37872350--37872477 Score: 109
Period size: 44 Copynumber: 2.9 Consensus size: 44
37872340 AGTGGGAAGT
* * *
37872350 AGATTTAAGCCAGCAAGTCTTATC-CTTCTGAAGTTGCAGTGGAGC
1 AGATTAAAGCTAG-AAGTCCTATCTC-TCTGAAGTTGCAGTGGAGC
* * * *
37872395 AGATTAAAGCTATAAGTCTTATCTCCCTGAAGTTGCAGTGGAGT
1 AGATTAAAGCTAGAAGTCCTATCTCTCTGAAGTTGCAGTGGAGC
* * *
37872439 AGATTGAAGC-ACGAATTCCTATAC-CTCTGAAGATGCAGT
1 AGATTAAAGCTA-GAAGTCCTAT-CTCTCTGAAGTTGCAGT
37872478 AGGATGAACA
Statistics
Matches: 69, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
43 1 0.01
44 56 0.81
45 12 0.17
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.29
Consensus pattern (44 bp):
AGATTAAAGCTAGAAGTCCTATCTCTCTGAAGTTGCAGTGGAGC
Found at i:37872700 original size:21 final size:21
Alignment explanation
Indices: 37872652--37872713 Score: 87
Period size: 19 Copynumber: 3.1 Consensus size: 21
37872642 ATTTTCGAGG
37872652 ATATACAATCTTAGATATG--
1 ATATACAATCTTAGATATGAT
*
37872671 ATATGCAATCTTAGATATGAT
1 ATATACAATCTTAGATATGAT
37872692 ATATACAATCTTAGA-A-GAT
1 ATATACAATCTTAGATATGAT
37872711 ATA
1 ATA
37872714 ATTTTGTAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
19 24 0.62
20 1 0.03
21 14 0.36
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.35
Consensus pattern (21 bp):
ATATACAATCTTAGATATGAT
Found at i:37872931 original size:19 final size:21
Alignment explanation
Indices: 37872907--37872945 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
37872897 TGTTTTCTTT
*
37872907 TTTTTTTCTT-TTT-CGATTA
1 TTTTTTACTTATTTACGATTA
37872926 TTTTTTACTTATTTACGATT
1 TTTTTTACTTATTTACGATT
37872946 TTAAAAAAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 9 0.53
20 3 0.18
21 5 0.29
ACGTcount: A:0.15, C:0.10, G:0.05, T:0.69
Consensus pattern (21 bp):
TTTTTTACTTATTTACGATTA
Found at i:37873175 original size:3 final size:3
Alignment explanation
Indices: 37873167--37873206 Score: 64
Period size: 3 Copynumber: 13.3 Consensus size: 3
37873157 ATTAATTTTG
37873167 TTA TTA TTA TTA TTA TTA -TA TTA TATA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA T
37873207 ACCTACATAT
Statistics
Matches: 35, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
2 2 0.06
3 30 0.86
4 3 0.09
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:37873203 original size:21 final size:20
Alignment explanation
Indices: 37873167--37873207 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
37873157 ATTAATTTTG
37873167 TTATTATTATTATTATTATA
1 TTATTATTATTATTATTATA
37873187 TTATATATTATTATTATTATA
1 TTAT-TATTATTATTATTATA
37873208 CCTACATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (20 bp):
TTATTATTATTATTATTATA
Found at i:37885058 original size:21 final size:21
Alignment explanation
Indices: 37885033--37885086 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 21
37885023 CAACTAACAC
*
37885033 AATTGTAATTTTGTATTTTGT
1 AATTGTAATTTTGTAATTTGT
*
37885054 AATTGTAAATTTGTAATTTGT
1 AATTGTAATTTTGTAATTTGT
* *
37885075 ATTTGTGATTTT
1 AATTGTAATTTT
37885087 AGGAAATAGC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (21 bp):
AATTGTAATTTTGTAATTTGT
Found at i:37885078 original size:6 final size:7
Alignment explanation
Indices: 37885035--37885085 Score: 52
Period size: 7 Copynumber: 7.3 Consensus size: 7
37885025 ACTAACACAA
37885035 TTGTAATT
1 TTGTAA-T
*
37885043 TTGTATT
1 TTGTAAT
37885050 TTGTAA-
1 TTGTAAT
37885056 TTGTAAAT
1 TTGT-AAT
37885064 TTGTAAT
1 TTGTAAT
37885071 TTGT-AT
1 TTGTAAT
*
37885077 TTGTGAT
1 TTGTAAT
37885084 TT
1 TT
37885086 TAGGAAATAG
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
6 10 0.26
7 19 0.50
8 9 0.24
ACGTcount: A:0.24, C:0.00, G:0.16, T:0.61
Consensus pattern (7 bp):
TTGTAAT
Found at i:37885304 original size:83 final size:83
Alignment explanation
Indices: 37885162--37885332 Score: 270
Period size: 83 Copynumber: 2.1 Consensus size: 83
37885152 TAAAAGAATA
* * * *
37885162 AAGAGAGATAGGAAAGCAAAAGAGAACTGTGTAATTTATTTATAATGAGAATATGCTTCTCCTAA
1 AAGAAAGATAGAAAAGCAAAAGAGAACTGTATAATTTATTTATAATGAGAATATGCTTCTCCAAA
*
37885227 GTTTATATTTATAAACAT
66 GTCTATATTTATAAACAT
*
37885245 AAGAAAGATAGAAAAGCAAAAGAGAATTGTATAATTTATTTATAATGAGAATATGCTTCTCCAAA
1 AAGAAAGATAGAAAAGCAAAAGAGAACTGTATAATTTATTTATAATGAGAATATGCTTCTCCAAA
* *
37885310 GTCTATATTTATAGATAT
66 GTCTATATTTATAAACAT
37885328 AAGAA
1 AAGAA
37885333 GTATACATTA
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
83 80 1.00
ACGTcount: A:0.45, C:0.08, G:0.16, T:0.32
Consensus pattern (83 bp):
AAGAAAGATAGAAAAGCAAAAGAGAACTGTATAATTTATTTATAATGAGAATATGCTTCTCCAAA
GTCTATATTTATAAACAT
Found at i:37889706 original size:38 final size:39
Alignment explanation
Indices: 37889650--37889723 Score: 132
Period size: 38 Copynumber: 1.9 Consensus size: 39
37889640 TATTATTTCA
*
37889650 CATATATATAAATTAATAAATATAATCATACAATTCAAC
1 CATATATATAAATTAATAAATATAATCATAAAATTCAAC
37889689 CATA-ATATAAATTAATAAATATAATCATAAAATTC
1 CATATATATAAATTAATAAATATAATCATAAAATTC
37889724 CATATGAACG
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
38 30 0.88
39 4 0.12
ACGTcount: A:0.55, C:0.11, G:0.00, T:0.34
Consensus pattern (39 bp):
CATATATATAAATTAATAAATATAATCATAAAATTCAAC
Found at i:37897414 original size:20 final size:20
Alignment explanation
Indices: 37897366--37897419 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 20
37897356 TAGTGCTATT
*
37897366 AGGGGCACCAAAGTGTAAAC
1 AGGGGCACCAAAGTATAAAC
* * * *
37897386 ATGGACACCAATGTATGAAC
1 AGGGGCACCAAAGTATAAAC
*
37897406 AGGGGCACCGAAGT
1 AGGGGCACCAAAGT
37897420 GCAAACCGTA
Statistics
Matches: 25, Mismatches: 9, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.37, C:0.20, G:0.30, T:0.13
Consensus pattern (20 bp):
AGGGGCACCAAAGTATAAAC
Found at i:37904517 original size:133 final size:132
Alignment explanation
Indices: 37904280--37904519 Score: 365
Period size: 133 Copynumber: 1.8 Consensus size: 132
37904270 AAGCGTTTGG
*
37904280 ATTTATTTAAGAAAATAAAGTCTATGGGTAAGCCCTTAGGCAAAGGCCAAAAGTTTGAAATATTG
1 ATTTATTTAAGAAAATAAAGTCTATGGGTAAGCCCCTAGGCAAAGGCCAAAAGTTTGAAATATTG
* *
37904345 TCTAGAATAATAGAGATTAAGGAATTAGTTTTAAGTGTTCAACGTTAGAATTTTTGAAATTGATT
66 CCTAGAACAATAGAGATTAAGGAATTAGTTTTAAGTGTTCAACGTTAGAATTTTTGAAATTGATT
37904410 AA
131 AA
* * * ** *
37904412 ATTTATTTAAGAAATTGAAGTCTATGGGTAAGCCCCTCGGTGAA-GCCTTGAAAGTTTGAAATAT
1 ATTTATTTAAGAAAATAAAGTCTATGGGTAAGCCCCTAGGCAAAGGCC--AAAAGTTTGAAATAT
*
37904476 TGCCTAGAACAATAGAGCTTAAGGAATTAGTTTTAAGTGTTCAA
64 TGCCTAGAACAATAGAGATTAAGGAATTAGTTTTAAGTGTTCAA
37904520 TGGTAGGATT
Statistics
Matches: 96, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
131 3 0.03
132 38 0.40
133 55 0.57
ACGTcount: A:0.37, C:0.10, G:0.20, T:0.33
Consensus pattern (132 bp):
ATTTATTTAAGAAAATAAAGTCTATGGGTAAGCCCCTAGGCAAAGGCCAAAAGTTTGAAATATTG
CCTAGAACAATAGAGATTAAGGAATTAGTTTTAAGTGTTCAACGTTAGAATTTTTGAAATTGATT
AA
Found at i:37906155 original size:27 final size:29
Alignment explanation
Indices: 37906100--37906171 Score: 76
Period size: 27 Copynumber: 2.5 Consensus size: 29
37906090 ATCAGTAAAT
* * *
37906100 AATGACCTTTGTGGCCTTTTTCTGTTAAAA-
1 AATG-CCTTTATGG-CTATTTCTGCTAAAAG
37906130 AA-GCCTTTATGGCTATTTCTGCTAAAAG
1 AATGCCTTTATGGCTATTTCTGCTAAAAG
*
37906158 AATGCCTTTGTGGC
1 AATGCCTTTATGGC
37906172 AATTAGTGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
27 13 0.36
28 10 0.28
29 11 0.31
30 2 0.06
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (29 bp):
AATGCCTTTATGGCTATTTCTGCTAAAAG
Found at i:37906208 original size:27 final size:27
Alignment explanation
Indices: 37906178--37906238 Score: 79
Period size: 27 Copynumber: 2.2 Consensus size: 27
37906168 TGGCAATTAG
37906178 TGAAAGAAAGTCCT-TAAGGCTAAACTC
1 TGAAAGAAAG-CCTCTAAGGCTAAACTC
* *
37906205 TGAAATAAAGCCTCTATGGCTAAACTC
1 TGAAAGAAAGCCTCTAAGGCTAAACTC
37906232 TGGAAAG
1 T-GAAAG
37906239 GAACGCCTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 3 0.10
27 22 0.76
28 4 0.14
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.23
Consensus pattern (27 bp):
TGAAAGAAAGCCTCTAAGGCTAAACTC
Found at i:37906324 original size:28 final size:28
Alignment explanation
Indices: 37906300--37906380 Score: 117
Period size: 28 Copynumber: 2.9 Consensus size: 28
37906290 GGAAAAGAAC
*
37906300 GCCTTTATGGCTGACTCTATTAAAGGAA
1 GCCTTTGTGGCTGACTCTATTAAAGGAA
**
37906328 GAATTTGTGGCTGACTCTATTAAAGGAA
1 GCCTTTGTGGCTGACTCTATTAAAGGAA
* *
37906356 GCCTTTGTGGTTGACTCTTTTAAAG
1 GCCTTTGTGGCTGACTCTATTAAAG
37906381 ACACCCTCGC
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 46 1.00
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (28 bp):
GCCTTTGTGGCTGACTCTATTAAAGGAA
Found at i:37908977 original size:24 final size:22
Alignment explanation
Indices: 37908935--37908979 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
37908925 CAATTATTCA
*
37908935 CATTTCATATACATGTATCATT
1 CATTTCATATACATATATCATT
37908957 CATTTCATATATCAATATATCAT
1 CATTTCATATA-C-ATATATCAT
37908980 GTAACATCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 11 0.55
23 1 0.05
24 8 0.40
ACGTcount: A:0.36, C:0.18, G:0.02, T:0.44
Consensus pattern (22 bp):
CATTTCATATACATATATCATT
Found at i:37909257 original size:25 final size:25
Alignment explanation
Indices: 37909190--37909257 Score: 59
Period size: 25 Copynumber: 2.7 Consensus size: 25
37909180 TAAGCTTTTT
* *
37909190 CGAGTTGAGTAAT-AGTAAGCTCCTA
1 CGAGCTGAG-AATCAGTAAACTCCTA
* * *
37909215 AGAGCTGA-ATATCGGTAAACTCTTA
1 CGAGCTGAGA-ATCAGTAAACTCCTA
37909240 CGAGCTGAGAATCAGTAA
1 CGAGCTGAGAATCAGTAA
37909258 CCTTAATGAC
Statistics
Matches: 33, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
23 1 0.03
24 2 0.06
25 29 0.88
26 1 0.03
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (25 bp):
CGAGCTGAGAATCAGTAAACTCCTA
Found at i:37919365 original size:17 final size:17
Alignment explanation
Indices: 37919343--37919390 Score: 87
Period size: 17 Copynumber: 2.8 Consensus size: 17
37919333 CCAGATTTTG
37919343 ATACCCATATCTTTCTA
1 ATACCCATATCTTTCTA
*
37919360 ATACCCATATCTTTCTG
1 ATACCCATATCTTTCTA
37919377 ATACCCATATCTTT
1 ATACCCATATCTTT
37919391 AACTTTCTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.27, C:0.29, G:0.02, T:0.42
Consensus pattern (17 bp):
ATACCCATATCTTTCTA
Found at i:37922942 original size:17 final size:17
Alignment explanation
Indices: 37922920--37922969 Score: 91
Period size: 17 Copynumber: 2.9 Consensus size: 17
37922910 TCCCAGGTTT
*
37922920 TGATACTCATATCTTTC
1 TGATACCCATATCTTTC
37922937 TGATACCCATATCTTTC
1 TGATACCCATATCTTTC
37922954 TGATACCCATATCTTT
1 TGATACCCATATCTTT
37922970 AACTTTCTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 32 1.00
ACGTcount: A:0.24, C:0.26, G:0.06, T:0.44
Consensus pattern (17 bp):
TGATACCCATATCTTTC
Found at i:37939770 original size:20 final size:20
Alignment explanation
Indices: 37939745--37939782 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
37939735 AAATCTTAAA
37939745 AATTTTAATAATTAAATTGT
1 AATTTTAATAATTAAATTGT
**
37939765 AATTTTTTTAATTAAATT
1 AATTTTAATAATTAAATT
37939783 ATTAAAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.03, T:0.55
Consensus pattern (20 bp):
AATTTTAATAATTAAATTGT
Found at i:37943824 original size:22 final size:23
Alignment explanation
Indices: 37943799--37943842 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
37943789 AAAAAATAAC
*
37943799 CAAAATGT-TATAATTTTTTTAT
1 CAAAATATATATAATTTTTTTAT
37943821 CAAAATATATATAATTTTTTTA
1 CAAAATATATATAATTTTTTTA
37943843 ATTTACGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 7 0.35
23 13 0.65
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (23 bp):
CAAAATATATATAATTTTTTTAT
Found at i:37944002 original size:27 final size:27
Alignment explanation
Indices: 37943934--37944003 Score: 97
Period size: 27 Copynumber: 2.6 Consensus size: 27
37943924 CACCAATGGG
* *
37943934 ATTGGCGGCACCAAAGGTGTCAAAGCC
1 ATTGGCGGCACCAATGGTGCCAAAGCC
*
37943961 ATTGGTGGCACCAATGGTGCCAATA-CC
1 ATTGGCGGCACCAATGGTGCCAA-AGCC
37943988 ATTGGCGGCACCAATG
1 ATTGGCGGCACCAATG
37944004 TATATTAGGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
27 37 0.97
28 1 0.03
ACGTcount: A:0.27, C:0.26, G:0.29, T:0.19
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAAAGCC
Found at i:37944055 original size:4 final size:4
Alignment explanation
Indices: 37944046--37944181 Score: 84
Period size: 4 Copynumber: 33.0 Consensus size: 4
37944036 GAAGGAGAGG
* * *
37944046 GAAA GAAA GAAA GAAA GAAA GGAAG GAGAG GAAA GAAA G-AA -AAA GAAG
1 GAAA GAAA GAAA GAAA GAAA -GAAA GA-AA GAAA GAAA GAAA GAAA GAAA
* * *
37944094 GAAA GAAAA GGGAA G-GA GAAGA GAAA AAAA GAAA GAAA G-AA G-AA GAAAA
1 GAAA G-AAA -GAAA GAAA GAA-A GAAA GAAA GAAA GAAA GAAA GAAA G-AAA
* *
37944143 GGAAA TGAGAA GAAA AAAA GAAA GAAA GAAG GAAA GAAA
1 -GAAA -GA-AA GAAA GAAA GAAA GAAA GAAA GAAA GAAA
37944182 AGGAAAGGAG
Statistics
Matches: 106, Mismatches: 14, Indels: 24
0.74 0.10 0.17
Matches are distributed among these distances:
3 12 0.11
4 65 0.61
5 25 0.24
6 4 0.04
ACGTcount: A:0.68, C:0.00, G:0.31, T:0.01
Consensus pattern (4 bp):
GAAA
Found at i:37944081 original size:18 final size:18
Alignment explanation
Indices: 37944058--37944112 Score: 58
Period size: 18 Copynumber: 2.9 Consensus size: 18
37944048 AAGAAAGAAA
37944058 GAAAGAAAGGAAGGAGAG
1 GAAAGAAAGGAAGGAGAG
**
37944076 GAAAGAAA-GAAAAAGAAG
1 GAAAGAAAGGAAGGAG-AG
37944094 GAAAGAAAAGGGAAGGAGA
1 GAAAG-AAA-GGAAGGAGA
37944113 AGAGAAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
17 5 0.17
18 15 0.52
19 3 0.10
20 1 0.03
21 5 0.17
ACGTcount: A:0.62, C:0.00, G:0.38, T:0.00
Consensus pattern (18 bp):
GAAAGAAAGGAAGGAGAG
Found at i:37944121 original size:19 final size:19
Alignment explanation
Indices: 37944099--37944201 Score: 75
Period size: 20 Copynumber: 5.2 Consensus size: 19
37944089 AGAAGGAAAG
*
37944099 AAAAGGGAAGGAGAAGAGAA
1 AAAAGGAAAGGAGAAGAG-A
* *
37944119 AAAAAGAAAGAAAGAAGA-A
1 AAAAGGAAAG-GAGAAGAGA
*
37944138 GAAAAGGAAATGAGAAGA-A
1 -AAAAGGAAAGGAGAAGAGA
* * *
37944157 AAAAAGAAAGAAAGAAGGAAA
1 AAAAGGAAAG-GAGAA-GAGA
37944178 GAAAAGGAAAGGAGAAGAGA
1 -AAAAGGAAAGGAGAAGAGA
37944198 AAAA
1 AAAA
37944202 AAAAGAAGAA
Statistics
Matches: 65, Mismatches: 12, Indels: 13
0.72 0.13 0.14
Matches are distributed among these distances:
18 8 0.12
19 16 0.25
20 21 0.32
21 11 0.17
22 9 0.14
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (19 bp):
AAAAGGAAAGGAGAAGAGA
Found at i:37944125 original size:40 final size:39
Alignment explanation
Indices: 37944047--37944244 Score: 168
Period size: 40 Copynumber: 5.2 Consensus size: 39
37944037 AAGGAGAGGG
* *
37944047 AAAGAAAGA-AAGAAAG-AAA-GGAAGGAG-AG-GAAAG
1 AAAGAAAAAGAAGAAAGAAAAGGGAAGGAGAAGAGAAAA
37944081 AAAGAAAAAGAAGGAAAGAAAAGGGAAGGAGAAGAGAAAA
1 AAAGAAAAAGAA-GAAAGAAAAGGGAAGGAGAAGAGAAAA
* *
37944121 AAAGAAAGAAAGAAG-AAGAAAAGGAAATGAG-A-AGAAAA
1 AAAG-AA-AAAGAAGAAAGAAAAGGGAAGGAGAAGAGAAAA
*
37944159 AAAGAAAGAAAGAAGGAAAGAAAAGGAAAGGAGAAGAGAAAA
1 AAAG-AA-AAAGAA-GAAAGAAAAGGGAAGGAGAAGAGAAAA
* ** *
37944201 AAA-AAGAAGAAGAAGAGGGAA-GGAAGGA-AA-AAAAAA
1 AAAGAAAAAGAAGAA-AGAAAAGGGAAGGAGAAGAGAAAA
37944237 AAAGAAAA
1 AAAGAAAA
37944245 GAAAATGTAA
Statistics
Matches: 139, Mismatches: 11, Indels: 25
0.79 0.06 0.14
Matches are distributed among these distances:
34 8 0.06
35 2 0.01
36 13 0.09
37 8 0.06
38 37 0.27
39 13 0.09
40 39 0.28
41 4 0.03
42 15 0.11
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (39 bp):
AAAGAAAAAGAAGAAAGAAAAGGGAAGGAGAAGAGAAAA
Found at i:37944180 original size:80 final size:76
Alignment explanation
Indices: 37944047--37944244 Score: 244
Period size: 78 Copynumber: 2.6 Consensus size: 76
37944037 AAGGAGAGGG
* * *
37944047 AAAGAAAGAAAG-A-AAG-AAAGGAAGGAGAGGAAAGAAAGAAAAAGAAGGAAAGAAAAGGGAAG
1 AAAGAAAGAAAGAAGAAGAAAAGGAAGGAGAAGAAAAAAAGAAAAAGAAGGAAAGAAAAGGAAAG
37944109 GAGAAGAGAAAA
66 GAGAAGAG-AAA
*
37944121 AAAGAAAGAAAGAAGAAGAAAAGGAAATGAGAAGAAAAAAAGAAAGAAAGAAGGAAAGAAAAGGA
1 AAAGAAAGAAAGAAGAAGAAAAGG-AAGGAGAAGAAAAAAAG-AA-AAAGAAGGAAAGAAAAGGA
37944186 AAGGAGAAGAGAAA
63 AAGGAGAAGAGAAA
* * *
37944200 AAA-AAAG-AAGAAGAAGAGGGAAGGAAGGAAAAAAAAAAAAGAAAA
1 AAAGAAAGAAAGAAGAAGA--AAAGGAAGGAGAAGAAAAAAAGAAAA
37944245 GAAAATGTAA
Statistics
Matches: 108, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
74 12 0.11
75 1 0.01
76 5 0.05
77 17 0.16
78 32 0.30
79 12 0.11
80 29 0.27
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (76 bp):
AAAGAAAGAAAGAAGAAGAAAAGGAAGGAGAAGAAAAAAAGAAAAAGAAGGAAAGAAAAGGAAAG
GAGAAGAGAAA
Found at i:37944195 original size:16 final size:15
Alignment explanation
Indices: 37944125--37944195 Score: 64
Period size: 16 Copynumber: 5.0 Consensus size: 15
37944115 AGAAAAAAAG
*
37944125 AAAGAAAGAAGAAGA
1 AAAGAAAGGAGAAGA
*
37944140 AAAGGAAATGAGAAGA
1 AAA-GAAAGGAGAAGA
37944156 AAA-AAA-GA-AAG-
1 AAAGAAAGGAGAAGA
37944167 AAAG-AAGGA-AAGA
1 AAAGAAAGGAGAAGA
37944180 AAAGGAAAGGAGAAGA
1 AAA-GAAAGGAGAAGA
37944196 GAAAAAAAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 13
0.76 0.03 0.21
Matches are distributed among these distances:
11 5 0.11
12 8 0.17
13 5 0.11
14 4 0.09
15 8 0.17
16 17 0.36
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (15 bp):
AAAGAAAGGAGAAGA
Found at i:37944214 original size:21 final size:22
Alignment explanation
Indices: 37944149--37944217 Score: 79
Period size: 22 Copynumber: 3.1 Consensus size: 22
37944139 AAAAGGAAAT
37944149 GAGAAGAAAAAAAGAAAGAAAGAA
1 GAGAA-AAAAAAAGAAAG-AAGAA
* * *
37944173 G-GAAAGAAAAGGAAAGGAGAA
1 GAGAAAAAAAAAGAAAGAAGAA
37944194 GAGAAAAAAAAAG-AAGAAGAA
1 GAGAAAAAAAAAGAAAGAAGAA
37944215 GAG
1 GAG
37944218 GGAAGGAAGG
Statistics
Matches: 38, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
21 15 0.39
22 19 0.50
23 3 0.08
24 1 0.03
ACGTcount: A:0.70, C:0.00, G:0.30, T:0.00
Consensus pattern (22 bp):
GAGAAAAAAAAAGAAAGAAGAA
Found at i:37945035 original size:22 final size:22
Alignment explanation
Indices: 37945010--37945054 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
37945000 TGTTATAAGT
37945010 TTTTTTTATTTACCAAAATATA
1 TTTTTTTATTTACCAAAATATA
37945032 TTTTTTTATTTACCAAAATATA
1 TTTTTTTATTTACCAAAATATA
37945054 T
1 T
37945055 AAAAAAAACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.36, C:0.09, G:0.00, T:0.56
Consensus pattern (22 bp):
TTTTTTTATTTACCAAAATATA
Found at i:37945062 original size:73 final size:69
Alignment explanation
Indices: 37944896--37945029 Score: 171
Period size: 73 Copynumber: 1.9 Consensus size: 69
37944886 TACCAAAATA
* * *
37944896 TTACAAAAAAATAAAAAAAAAATACGAAAATATTATAAACTTTTTTTTATTTACCAGAATAATGG
1 TTACAAAAATATAAAAAAAAAATACCAAAATATTATAAACTTTTTTTTATTTACCAAAATAATGG
37944961 GTTT
66 GTTT
* *
37944965 TTACAAAAATATTAAAAAATAAAAAATAACCAAAATGTTAT-AAGTTTTTTTTATTTACCAAAAT
1 TTACAAAAATA-T--AAAA-AAAAAAT-ACCAAAATATTATAAACTTTTTTTTATTTACCAAAAT
37945029 A
61 A
37945030 TATTTTTTTA
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
69 10 0.18
70 1 0.02
72 4 0.07
73 29 0.53
74 11 0.20
ACGTcount: A:0.52, C:0.07, G:0.05, T:0.35
Consensus pattern (69 bp):
TTACAAAAATATAAAAAAAAAATACCAAAATATTATAAACTTTTTTTTATTTACCAAAATAATGG
GTTT
Found at i:37945476 original size:15 final size:15
Alignment explanation
Indices: 37945456--37945487 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
37945446 GATGCGGCTA
37945456 ATAAATTTAGAAATT
1 ATAAATTTAGAAATT
37945471 ATAAATTTAGAAATT
1 ATAAATTTAGAAATT
37945486 AT
1 AT
37945488 GATATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (15 bp):
ATAAATTTAGAAATT
Found at i:37949472 original size:3 final size:3
Alignment explanation
Indices: 37949464--37949504 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
37949454 TCTTAATACT
37949464 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
37949505 TAATAATAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:37949680 original size:10 final size:11
Alignment explanation
Indices: 37949640--37949679 Score: 73
Period size: 11 Copynumber: 3.7 Consensus size: 11
37949630 AAAAAAATAC
37949640 CTTCTTTTTCT
1 CTTCTTTTTCT
37949651 CTTCTTTTTCT
1 CTTCTTTTTCT
37949662 C-TCTTTTTCT
1 CTTCTTTTTCT
37949672 CTTCTTTT
1 CTTCTTTT
37949680 CCGCAGCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 10 0.36
11 18 0.64
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (11 bp):
CTTCTTTTTCT
Found at i:37949804 original size:27 final size:27
Alignment explanation
Indices: 37949774--37949863 Score: 108
Period size: 27 Copynumber: 3.1 Consensus size: 27
37949764 AATCAGTATG
37949774 GCACCATTGGTGCCGCCAATGGCATTA
1 GCACCATTGGTGCCGCCAATGGCATTA
37949801 GCACCATTGGTGCCGCCTGCCGCCAATGGCATTA
1 GCACCA-T--TG--G--TGCCGCCAATGGCATTA
*
37949835 GCACCATTGGTGCCGCCAATGGCTTTA
1 GCACCATTGGTGCCGCCAATGGCATTA
37949862 GC
1 GC
37949864 GTGACCAAGG
Statistics
Matches: 55, Mismatches: 1, Indels: 14
0.79 0.01 0.20
Matches are distributed among these distances:
27 24 0.44
28 1 0.02
29 1 0.02
30 2 0.04
31 2 0.04
32 1 0.02
33 1 0.02
34 23 0.42
ACGTcount: A:0.19, C:0.32, G:0.27, T:0.22
Consensus pattern (27 bp):
GCACCATTGGTGCCGCCAATGGCATTA
Found at i:37949827 original size:34 final size:34
Alignment explanation
Indices: 37949784--37949851 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
37949774 GCACCATTGG
37949784 TGCCGCCAATGGCATTAGCACCATTGGTGCCGCC
1 TGCCGCCAATGGCATTAGCACCATTGGTGCCGCC
37949818 TGCCGCCAATGGCATTAGCACCATTGGTGCCGCC
1 TGCCGCCAATGGCATTAGCACCATTGGTGCCGCC
37949852 AATGGCTTTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.18, C:0.35, G:0.26, T:0.21
Consensus pattern (34 bp):
TGCCGCCAATGGCATTAGCACCATTGGTGCCGCC
Found at i:37949925 original size:13 final size:13
Alignment explanation
Indices: 37949891--37949916 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37949881 TCACATCGGT
37949891 CAGATTTTTTTTG
1 CAGATTTTTTTTG
37949904 CAGATTTTTTTTG
1 CAGATTTTTTTTG
37949917 ATATATTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.08, G:0.15, T:0.62
Consensus pattern (13 bp):
CAGATTTTTTTTG
Found at i:37949968 original size:24 final size:23
Alignment explanation
Indices: 37949917--37949961 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
37949907 ATTTTTTTTG
37949917 ATATATTTTGGTAAATAAAAAAT
1 ATATATTTTGGTAAATAAAAAAT
37949940 ATATATTTTGGTAAATAAAAAA
1 ATATATTTTGGTAAATAAAAAA
37949962 AGTTATAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.53, C:0.00, G:0.09, T:0.38
Consensus pattern (23 bp):
ATATATTTTGGTAAATAAAAAAT
Found at i:37950300 original size:29 final size:29
Alignment explanation
Indices: 37950226--37950286 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
37950216 AAGTAATTAA
* *
37950226 TATTATATATGAAATATATAAACTTATAT
1 TATTATATATAAAATATATAAACTTAAAT
37950255 TATTATATATAAAATATATAAACTTAAAT
1 TATTATATATAAAATATATAAACTTAAAT
37950284 TAT
1 TAT
37950287 AATAAAATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (29 bp):
TATTATATATAAAATATATAAACTTAAAT
Found at i:37950782 original size:22 final size:21
Alignment explanation
Indices: 37950756--37950809 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 21
37950746 GAAAATCTTT
37950756 AAATTTGAAAAAAAAATACAAA
1 AAATTT-AAAAAAAAATACAAA
* *
37950778 AAA-TTATAAAAAAAATAGAGA
1 AAATTTA-AAAAAAAATACAAA
*
37950799 AAATTTTAAAA
1 AAATTTAAAAA
37950810 TATATATTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 1 0.04
21 21 0.78
22 5 0.19
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (21 bp):
AAATTTAAAAAAAAATACAAA
Found at i:37950788 original size:21 final size:21
Alignment explanation
Indices: 37950764--37950809 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
37950754 TTAAATTTGA
37950764 AAAAAAAATACAAAAAATTAT
1 AAAAAAAATACAAAAAATTAT
* * *
37950785 AAAAAAAATAGAGAAAATTTT
1 AAAAAAAATACAAAAAATTAT
37950806 AAAA
1 AAAA
37950810 TATATATTAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.74, C:0.02, G:0.04, T:0.20
Consensus pattern (21 bp):
AAAAAAAATACAAAAAATTAT
Found at i:37953651 original size:25 final size:23
Alignment explanation
Indices: 37953618--37953688 Score: 79
Period size: 25 Copynumber: 3.0 Consensus size: 23
37953608 GAGCTATATA
*
37953618 TAACGGGAAGCTCATGTGAGTCATG
1 TAACGGGAAGCTCATGAGAG-C-TG
*
37953643 TAACGGGAAGCTCATAAGAGCTG
1 TAACGGGAAGCTCATGAGAGCTG
* *
37953666 TAATCAGGAAGCTCATGCGAGCT
1 TAA-CGGGAAGCTCATGAGAGCT
37953689 AATATCGGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
23 5 0.12
24 17 0.43
25 18 0.45
ACGTcount: A:0.31, C:0.18, G:0.30, T:0.21
Consensus pattern (23 bp):
TAACGGGAAGCTCATGAGAGCTG
Found at i:37953687 original size:24 final size:23
Alignment explanation
Indices: 37953618--37953786 Score: 70
Period size: 25 Copynumber: 6.9 Consensus size: 23
37953608 GAGCTATATA
* *
37953618 TAACGGGAAGCTCATGTGAGTCATG
1 TAACAGGAAGCTCATGAGAG-C-TG
* *
37953643 TAACGGGAAGCTCATAAGAGCTG
1 TAACAGGAAGCTCATGAGAGCTG
* *
37953666 TAATCAGGAAGCTCATGCGAGCTAA
1 TAA-CAGGAAGCTCATGAGAGCT-G
* ** * *
37953691 TATC-GGAAAGCTCCGGAGAACCG
1 TAACAGG-AAGCTCATGAGAGCTG
* *
37953714 TTAATCAGGAAGCTTATGAGAGCCAG
1 -TAA-CAGGAAGCTCATGAGAG-CTG
* * **
37953740 ATATCAGGAAGCTCGTGAGAGCCAAA
1 -TAACAGGAAGCTCATGAGAG-C-TG
*
37953766 TAACAGGAAGCTCAAGAGAGC
1 TAACAGGAAGCTCATGAGAGC
37953787 CATATATCGA
Statistics
Matches: 109, Mismatches: 27, Indels: 17
0.71 0.18 0.11
Matches are distributed among these distances:
23 7 0.06
24 31 0.28
25 64 0.59
26 7 0.06
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.18
Consensus pattern (23 bp):
TAACAGGAAGCTCATGAGAGCTG
Found at i:37953758 original size:25 final size:25
Alignment explanation
Indices: 37953717--37953794 Score: 102
Period size: 25 Copynumber: 3.1 Consensus size: 25
37953707 AGAACCGTTA
* *
37953717 ATCAGGAAGCTTATGAGAGCCAGAT
1 ATCAGGAAGCTCATGAGAGCCAAAT
*
37953742 ATCAGGAAGCTCGTGAGAGCCAAAT
1 ATCAGGAAGCTCATGAGAGCCAAAT
* * *
37953767 AACAGGAAGCTCAAGAGAGCCATAT
1 ATCAGGAAGCTCATGAGAGCCAAAT
37953792 ATC
1 ATC
37953795 GATAAATACA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.38, C:0.19, G:0.26, T:0.17
Consensus pattern (25 bp):
ATCAGGAAGCTCATGAGAGCCAAAT
Found at i:37953983 original size:24 final size:25
Alignment explanation
Indices: 37953923--37953986 Score: 78
Period size: 25 Copynumber: 2.6 Consensus size: 25
37953913 GAGCTATATA
* **
37953923 TAACGGGAAGCTCATGTGAGTCATG
1 TAACAGGAAGCTCATAAGAGTCATG
37953948 TAACAGGAAGCTCATAAGAG-C-TG
1 TAACAGGAAGCTCATAAGAGTCATG
37953971 TAATCAGGAAGCTCAT
1 TAA-CAGGAAGCTCAT
37953987 GTGAGCTAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
23 5 0.14
24 13 0.37
25 17 0.49
ACGTcount: A:0.34, C:0.17, G:0.27, T:0.22
Consensus pattern (25 bp):
TAACAGGAAGCTCATAAGAGTCATG
Found at i:37953992 original size:24 final size:23
Alignment explanation
Indices: 37953923--37953993 Score: 88
Period size: 24 Copynumber: 3.0 Consensus size: 23
37953913 GAGCTATATA
*
37953923 TAACGGGAAGCTCATGTGAGTCATG
1 TAACAGGAAGCTCATGTGAG-C-TG
**
37953948 TAACAGGAAGCTCATAAGAGCTG
1 TAACAGGAAGCTCATGTGAGCTG
37953971 TAATCAGGAAGCTCATGTGAGCT
1 TAA-CAGGAAGCTCATGTGAGCT
37953994 AATATCGGAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
23 5 0.12
24 18 0.45
25 17 0.43
ACGTcount: A:0.32, C:0.17, G:0.28, T:0.23
Consensus pattern (23 bp):
TAACAGGAAGCTCATGTGAGCTG
Found at i:37954040 original size:305 final size:305
Alignment explanation
Indices: 37953485--37954100 Score: 1097
Period size: 305 Copynumber: 2.0 Consensus size: 305
37953475 TTGAACTAAA
37953485 ATATCGATAAATACACAGGTAGTACACACAAAGTGTACAAATCTATAATCCATCAATTCATATAT
1 ATATCGATAAATACACAGGTAGTACACACAAAGTGTACAAATCTATAATCCATCAATTCATATAT
* * *
37953550 TATCCTTCAATTCATATTCAGGAATACTTATATGAGCATGTAAACGGGAAGATCTTCCGAGCTAT
66 TATCCGTCAATTCATATTCAGGAATACTCATACGAGCATGTAAACGGGAAGATCTTCCGAGCTAT
*
37953615 ATATAACGGGAAGCTCATGTGAGTCATGTAACGGGAAGCTCATAAGAGCTGTAATCAGGAAGCTC
131 ATATAACGGGAAGCTCATGTGAGTCATGTAACAGGAAGCTCATAAGAGCTGTAATCAGGAAGCTC
* *
37953680 ATGCGAGCTAATATCGGAAAGCTCCGGAGAACCGTTAATCAGGAAGCTTATGAGAGCCAGATATC
196 ATGCGAGCTAATATCGGAAAGCTCCGGAGAACCGTTAATCAGAAAGCTCATGAGAGCCAGATATC
*
37953745 AGGAAGCTCGTGAGAGCCAAATAACAGGAAGCTCAAGAGAGCCAT
261 AGGAAGCTCGTGAGAGCCAAATAACAGGAAGCTCAAAAGAGCCAT
* * * *
37953790 ATATCGATAAATACACATGTAGTACACACAAAGTGTATAAATCTGTAATCCGTCAATTCATATAT
1 ATATCGATAAATACACAGGTAGTACACACAAAGTGTACAAATCTATAATCCATCAATTCATATAT
*
37953855 TATCCGTCAATTCATATTCAGGAATACTCATACGAGCATGTAAACGGGAAGCTCTTCCGAGCTAT
66 TATCCGTCAATTCATATTCAGGAATACTCATACGAGCATGTAAACGGGAAGATCTTCCGAGCTAT
37953920 ATATAACGGGAAGCTCATGTGAGTCATGTAACAGGAAGCTCATAAGAGCTGTAATCAGGAAGCTC
131 ATATAACGGGAAGCTCATGTGAGTCATGTAACAGGAAGCTCATAAGAGCTGTAATCAGGAAGCTC
* *
37953985 ATGTGAGCTAATATCGGAAAGCTCCGGAGAACTGTTAATCAGAAAGCTCATGAGAGCCAGATATC
196 ATGCGAGCTAATATCGGAAAGCTCCGGAGAACCGTTAATCAGAAAGCTCATGAGAGCCAGATATC
*
37954050 GGGAAGCTCGTGAGAGCCAAATAACAGGAAGCTCAAAAGAGCCAT
261 AGGAAGCTCGTGAGAGCCAAATAACAGGAAGCTCAAAAGAGCCAT
37954095 ATATCG
1 ATATCG
37954101 GGATGTTCAT
Statistics
Matches: 296, Mismatches: 15, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
305 296 1.00
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (305 bp):
ATATCGATAAATACACAGGTAGTACACACAAAGTGTACAAATCTATAATCCATCAATTCATATAT
TATCCGTCAATTCATATTCAGGAATACTCATACGAGCATGTAAACGGGAAGATCTTCCGAGCTAT
ATATAACGGGAAGCTCATGTGAGTCATGTAACAGGAAGCTCATAAGAGCTGTAATCAGGAAGCTC
ATGCGAGCTAATATCGGAAAGCTCCGGAGAACCGTTAATCAGAAAGCTCATGAGAGCCAGATATC
AGGAAGCTCGTGAGAGCCAAATAACAGGAAGCTCAAAAGAGCCAT
Found at i:37954056 original size:25 final size:25
Alignment explanation
Indices: 37954028--37954166 Score: 127
Period size: 25 Copynumber: 5.6 Consensus size: 25
37954018 GTTAATCAGA
* *
37954028 AAGCTCATGAGAGCCAGATATCGGG
1 AAGCTCATAAGAGCCAAATATCGGG
* * * *
37954053 AAGCTCGTGAGAGCCAAATAACAGG
1 AAGCTCATAAGAGCCAAATATCGGG
* *
37954078 AAGCTCAAAAGAGCCATATATCGGG
1 AAGCTCATAAGAGCCAAATATCGGG
* * * *
37954103 ATGTTCATAAGAGCTAAATAACGGG
1 AAGCTCATAAGAGCCAAATATCGGG
* * *
37954128 AAGATCGTAAGAGCCATATATCGGG
1 AAGCTCATAAGAGCCAAATATCGGG
37954153 ACA-CTCATAAGAGC
1 A-AGCTCATAAGAGC
37954167 TGTGGTGAGT
Statistics
Matches: 89, Mismatches: 24, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
25 88 0.99
26 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.26, T:0.17
Consensus pattern (25 bp):
AAGCTCATAAGAGCCAAATATCGGG
Found at i:37954082 original size:50 final size:50
Alignment explanation
Indices: 37954028--37954166 Score: 163
Period size: 50 Copynumber: 2.8 Consensus size: 50
37954018 GTTAATCAGA
* * * *
37954028 AAGCTCATGAGAGCCAGATATCGGGAAGCTCGTGAGAGCCAAATAACAGG
1 AAGCTCATAAGAGCCATATATCGGGAAGCTCATAAGAGCCAAATAACAGG
* * * * *
37954078 AAGCTCAAAAGAGCCATATATCGGGATGTTCATAAGAGCTAAATAACGGG
1 AAGCTCATAAGAGCCATATATCGGGAAGCTCATAAGAGCCAAATAACAGG
* *
37954128 AAGATCGTAAGAGCCATATATCGGGACA-CTCATAAGAGC
1 AAGCTCATAAGAGCCATATATCGGGA-AGCTCATAAGAGC
37954167 TGTGGTGAGT
Statistics
Matches: 74, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
50 74 1.00
ACGTcount: A:0.38, C:0.19, G:0.26, T:0.17
Consensus pattern (50 bp):
AAGCTCATAAGAGCCATATATCGGGAAGCTCATAAGAGCCAAATAACAGG
Found at i:37956583 original size:25 final size:25
Alignment explanation
Indices: 37956555--37956663 Score: 130
Period size: 25 Copynumber: 4.4 Consensus size: 25
37956545 TAAACTCCTC
*
37956555 CGAGCTGAATAACGATAAGCTCTTT
1 CGAGCTGAATAACGATAAGCTCATT
* *
37956580 CGAGGTGAATAACGATAAGCTCTTT
1 CGAGCTGAATAACGATAAGCTCATT
*
37956605 CGAGCTGAATAACGGTAAGCTCATT
1 CGAGCTGAATAACGATAAGCTCATT
* * * *
37956630 CAAGCTGAGTATC-AGTAAGCTCATA
1 CGAGCTGAATAACGA-TAAGCTCATT
37956655 CGAGCTGAA
1 CGAGCTGAA
37956664 ATCGGTAACC
Statistics
Matches: 72, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
25 72 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.25
Consensus pattern (25 bp):
CGAGCTGAATAACGATAAGCTCATT
Found at i:37959471 original size:2 final size:2
Alignment explanation
Indices: 37959464--37959497 Score: 52
Period size: 2 Copynumber: 17.5 Consensus size: 2
37959454 ATGTATTTTC
*
37959464 AT AT AT AT AT AT AT AT AT CT AT AT AT AT AT -T AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
37959498 ACCAAATAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.03
2 28 0.97
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37960988 original size:783 final size:783
Alignment explanation
Indices: 37959478--37961028 Score: 2922
Period size: 783 Copynumber: 2.0 Consensus size: 783
37959468 ATATATATAT
* *
37959478 ATATCTATATATATATTATAACCAAATAAACCATCAATTTACCAAGCTAATTTGAGTCCTTTAAT
1 ATATATATATATATATTATAACCAAATAAACCATCAATTTACCAAGCTAATTTGAATCCTTTAAT
37959543 ACCAATTCATTTATCTACCAAAACACACCATTTGATACCAAAAAGCATTTCAAATACTAACATAT
66 ACCAATTCATTTATCTACCAAAACACACCATTTGATACCAAAAAGCATTTCAAATACTAACATAT
*
37959608 TTAGACATATATATACCTTAAATATCAAGGTACCAATTTATCACCAATTCTTCACATCACAAACA
131 TTAGACATATATATACCTTAAATATCAAGGTACCAATTCATCACCAATTCTTCACATCACAAACA
37959673 TATGTACAAAATGCACATTTAGCTAACATTTACCTTTCATTATTCTATCACAAATCAAGCCACAC
196 TATGTACAAAATGCACATTTAGCTAACATTTACCTTTCATTATTCTATCACAAATCAAGCCACAC
*
37959738 ACCAAATATGATAAGGCCATTTGTATATACACAGAGCAAAATATATCAAAACACAAGCCAAAACA
261 ACCAAATATGATAAGGCCATTTATATATACACAGAGCAAAATATATCAAAACACAAGCCAAAACA
* *
37959803 TATGGCCACAACCACAACATCACACATAGGCCAACATTAGTCAAAATAACCTATACATGCCATTA
326 TATGGCCACAACCACAACATCACACATAGGCCAACATTAGCCAAAATAACATATACATGCCATTA
* *
37959868 TAATCAAAATGTAACCAACTAAAAGTATCAAAAGAGACGATGGATAGTGTGATATAACTCCGAGA
391 TAACCAAAATGTAACCAACTAAAAGTACCAAAAGAGACGATGGATAGTGTGATATAACTCCGAGA
37959933 AGCTTTCAACCCGAACGAGCTTCCGAATCACTATAAAACACGGAAAATAACACATAGTAAGCATT
456 AGCTTTCAACCCGAACGAGCTTCCGAATCACTATAAAACACGGAAAATAACACATAGTAAGCATT
*
37959998 TAAGCTTAGTAAGTTCTTATAACTTAGAATTTAACTTACCATTTTAAATCACAATTAAGTTAAGC
521 TAAGCTTAGTAAGTTCGTATAACTTAGAATTTAACTTACCATTTTAAATCACAATTAAGTTAAGC
**
37960063 TAACATAACATATCCCAACCAATTTGGCTAAAAGTCTAAACACAAGTTCATCAACATATTAGCCA
586 TAACATAACATATCCCAACCAATTTGGCTAAAACCCTAAACACAAGTTCATCAACATATTAGCCA
37960128 TGTAAATAATATATAAAATCCAATATACATGGATGAATTCAACAAGTAATCACATTTCATATACA
651 TGTAAATAATATATAAAATCCAATATACATGGATGAATTCAACAAGTAATCACATTTCATATACA
37960193 CGAATTATTCATTTCATAAATCAATGTATCATGTAACATCACTTTCATGTATTCAAACATGTATT
716 CGAATTATTCATTTCATAAATCAATGTATCATGTAACATCACTTTCATGTATTCAAACATGTATT
37960258 TTC
781 TTC
* *
37960261 ATATATATATATATATTATAACCAAATAAACCATCAATTTACCAAGCTAATTTGAATCTTTTCAT
1 ATATATATATATATATTATAACCAAATAAACCATCAATTTACCAAGCTAATTTGAATCCTTTAAT
*
37960326 ACCAATTCATTTATCTACCAAAACACACCATTTGATACCAAAACGCATTTCAAATACTAACATAT
66 ACCAATTCATTTATCTACCAAAACACACCATTTGATACCAAAAAGCATTTCAAATACTAACATAT
*
37960391 TTAGACATATATATACCTTACATATCAAGGTACCAATTCATCACCAATTCTTCACATCACAAACA
131 TTAGACATATATATACCTTAAATATCAAGGTACCAATTCATCACCAATTCTTCACATCACAAACA
*
37960456 TATGTACAAAATGCACATTTAGCTAACATTTACCTTTCATTATTCTATCATAAATCAAGCCACAC
196 TATGTACAAAATGCACATTTAGCTAACATTTACCTTTCATTATTCTATCACAAATCAAGCCACAC
*
37960521 ACCAAATATGATAAGGCCATTTATATATACACATAGCAAAATATATCAAAACACAAGCCAAAACA
261 ACCAAATATGATAAGGCCATTTATATATACACAGAGCAAAATATATCAAAACACAAGCCAAAACA
37960586 TATGGCCACAACCACAACATCACACATAGGCCAACATTAGCCAAAATAACATATACATGCCATTA
326 TATGGCCACAACCACAACATCACACATAGGCCAACATTAGCCAAAATAACATATACATGCCATTA
37960651 TAACCAAAATGTAACCAACTAAAAGTACCAAAAGAGACGATGGATAGTGTGATATAACTCCGAGA
391 TAACCAAAATGTAACCAACTAAAAGTACCAAAAGAGACGATGGATAGTGTGATATAACTCCGAGA
* *
37960716 AGCTTTCAACCCGAACGAGCTTCCGAATCACTATAAAACACGGAAAATAACATATAGTAAGTATT
456 AGCTTTCAACCCGAACGAGCTTCCGAATCACTATAAAACACGGAAAATAACACATAGTAAGCATT
37960781 TAAGCTTAGTAAGTTCGTATAACTTAGAATTTAACTTACCATTTTAAATCACAATTAAGTTAAGC
521 TAAGCTTAGTAAGTTCGTATAACTTAGAATTTAACTTACCATTTTAAATCACAATTAAGTTAAGC
37960846 TAACATAACATATCCCAACCAATTTGGCTAAAACCCTAAACACAAGTTCATCAACATATTAGCCA
586 TAACATAACATATCCCAACCAATTTGGCTAAAACCCTAAACACAAGTTCATCAACATATTAGCCA
*
37960911 TGTAAATCATATATAAAATCCAATATACATGGATGAATTCAACAAGTAATCACATTTCATATACA
651 TGTAAATAATATATAAAATCCAATATACATGGATGAATTCAACAAGTAATCACATTTCATATACA
37960976 CGAATTATTCATTTCATAAATCAATGTATCATGTAACATCACTTTCATGTATT
716 CGAATTATTCATTTCATAAATCAATGTATCATGTAACATCACTTTCATGTATT
37961029 TCATGTAAAT
Statistics
Matches: 748, Mismatches: 20, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
783 748 1.00
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.28
Consensus pattern (783 bp):
ATATATATATATATATTATAACCAAATAAACCATCAATTTACCAAGCTAATTTGAATCCTTTAAT
ACCAATTCATTTATCTACCAAAACACACCATTTGATACCAAAAAGCATTTCAAATACTAACATAT
TTAGACATATATATACCTTAAATATCAAGGTACCAATTCATCACCAATTCTTCACATCACAAACA
TATGTACAAAATGCACATTTAGCTAACATTTACCTTTCATTATTCTATCACAAATCAAGCCACAC
ACCAAATATGATAAGGCCATTTATATATACACAGAGCAAAATATATCAAAACACAAGCCAAAACA
TATGGCCACAACCACAACATCACACATAGGCCAACATTAGCCAAAATAACATATACATGCCATTA
TAACCAAAATGTAACCAACTAAAAGTACCAAAAGAGACGATGGATAGTGTGATATAACTCCGAGA
AGCTTTCAACCCGAACGAGCTTCCGAATCACTATAAAACACGGAAAATAACACATAGTAAGCATT
TAAGCTTAGTAAGTTCGTATAACTTAGAATTTAACTTACCATTTTAAATCACAATTAAGTTAAGC
TAACATAACATATCCCAACCAATTTGGCTAAAACCCTAAACACAAGTTCATCAACATATTAGCCA
TGTAAATAATATATAAAATCCAATATACATGGATGAATTCAACAAGTAATCACATTTCATATACA
CGAATTATTCATTTCATAAATCAATGTATCATGTAACATCACTTTCATGTATTCAAACATGTATT
TTC
Found at i:37961262 original size:25 final size:25
Alignment explanation
Indices: 37961233--37961316 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 25
37961223 TAAACTCCTC
37961233 CGAGCTGAATAACGATAAGCTCTTT
1 CGAGCTGAATAACGATAAGCTCTTT
* *
37961258 CGAGCTGAATAACGGTAAGTTCATTT
1 CGAGCTGAATAACGATAAGCTC-TTT
* * * * *
37961284 -GAGCTGAGTATCAATAAGCTCATA
1 CGAGCTGAATAACGATAAGCTCTTT
37961308 CGAGCTGAA
1 CGAGCTGAA
37961317 ATCGGTAACC
Statistics
Matches: 47, Mismatches: 10, Indels: 4
0.77 0.16 0.07
Matches are distributed among these distances:
24 1 0.02
25 43 0.91
26 3 0.06
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (25 bp):
CGAGCTGAATAACGATAAGCTCTTT
Found at i:37966656 original size:27 final size:27
Alignment explanation
Indices: 37966622--37966680 Score: 66
Period size: 27 Copynumber: 2.2 Consensus size: 27
37966612 GTTATACTTC
* ** *
37966622 TTTG-TCAAAAATCAAGTGATATAACT
1 TTTGATCAAAAACCAAAAGATATAAAT
*
37966648 TTTGATCAATAACCAAAAGATATAAAT
1 TTTGATCAAAAACCAAAAGATATAAAT
37966675 TTTGAT
1 TTTGAT
37966681 TAATTACACC
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 4 0.15
27 23 0.85
ACGTcount: A:0.44, C:0.10, G:0.10, T:0.36
Consensus pattern (27 bp):
TTTGATCAAAAACCAAAAGATATAAAT
Found at i:37968144 original size:57 final size:55
Alignment explanation
Indices: 37968074--37968189 Score: 155
Period size: 57 Copynumber: 2.1 Consensus size: 55
37968064 ATATTTAGGG
* *
37968074 AATGATTATGATTTTCTCCAAATGAAAATGAAAATAGAGAAAATGGAA-TCATTTGGA
1 AATGATTATGATTTTCTCAAAATGAAAATGAAAAT-GAG-AAAT-GAATTCATTTAGA
*
37968131 AATGAATT-TGATTTTCTCAAAATGGAAATGAAAATGAGAAATGAATTCATTTAGA
1 AATG-ATTATGATTTTCTCAAAATGAAAATGAAAATGAGAAATGAATTCATTTAGA
37968186 AATG
1 AATG
37968190 GAAAATGAAT
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
54 3 0.06
55 16 0.30
56 3 0.06
57 29 0.54
58 3 0.06
ACGTcount: A:0.46, C:0.06, G:0.17, T:0.31
Consensus pattern (55 bp):
AATGATTATGATTTTCTCAAAATGAAAATGAAAATGAGAAATGAATTCATTTAGA
Found at i:37968203 original size:55 final size:57
Alignment explanation
Indices: 37968081--37968207 Score: 145
Period size: 57 Copynumber: 2.3 Consensus size: 57
37968071 GGGAATGATT
* * * *
37968081 ATGATTTTCTCCAAATGAAAATGAAAATAGAGAAAATGGAATCATTTGGAAATGAAT
1 ATGATATTCTCAAAATGAAAATGAAAATAGAGAAAATGGAATCATTTAGAAATGAAA
* * *
37968138 TTGATTTTCTCAAAATGGAAATGAAAAT-GAG-AAAT-GAATTCATTTAGAAATGGAAA
1 ATGATATTCTCAAAATGAAAATGAAAATAGAGAAAATGGAA-TCATTTAGAAAT-GAAA
37968194 ATGA-ATTCTCAAAA
1 ATGATATTCTCAAAA
37968208 ATAATCAGAA
Statistics
Matches: 61, Mismatches: 7, Indels: 6
0.82 0.09 0.08
Matches are distributed among these distances:
54 3 0.05
55 24 0.39
56 9 0.15
57 25 0.41
ACGTcount: A:0.47, C:0.07, G:0.17, T:0.29
Consensus pattern (57 bp):
ATGATATTCTCAAAATGAAAATGAAAATAGAGAAAATGGAATCATTTAGAAATGAAA
Found at i:37969381 original size:6 final size:6
Alignment explanation
Indices: 37969365--37969415 Score: 75
Period size: 6 Copynumber: 8.3 Consensus size: 6
37969355 TTTCTTTCCA
* *
37969365 TTCTCTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTC TTATTT TTCTTT
1 TTCT-TT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT TTCTTT
37969414 TT
1 TT
37969416 ACTTGTTTCC
Statistics
Matches: 40, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
6 36 0.90
7 4 0.10
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (6 bp):
TTCTTT
Found at i:37974437 original size:52 final size:52
Alignment explanation
Indices: 37974359--37974464 Score: 185
Period size: 52 Copynumber: 2.0 Consensus size: 52
37974349 TGATCCCTTG
*
37974359 GCAAATGACGCGAGTGCTTTTGTCTACGAAAACCACCGGTTGAGACACCGAA
1 GCAAATGACGCGAGTGCTTTTGTCTACAAAAACCACCGGTTGAGACACCGAA
* *
37974411 GCAAATGACGCGTGTGTTTTTGTCTACAAAAACCACCGGTTGAGACACCGAA
1 GCAAATGACGCGAGTGCTTTTGTCTACAAAAACCACCGGTTGAGACACCGAA
37974463 GC
1 GC
37974465 GGCCGAGAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.21
Consensus pattern (52 bp):
GCAAATGACGCGAGTGCTTTTGTCTACAAAAACCACCGGTTGAGACACCGAA
Found at i:37976133 original size:87 final size:87
Alignment explanation
Indices: 37975987--37976168 Score: 346
Period size: 87 Copynumber: 2.1 Consensus size: 87
37975977 CAACAAATGA
37975987 TAAAATCATCAATGCATAAAAACTTATAAAATATAGAACTTGACTGATGCACTTTAACAAATTGT
1 TAAAATCATCAATGCATAAAAACTTATAAAATATAGAACTTGACTGATGCACTTTAACAAATTGT
37976052 TTAAACTTAAACCAGATAAGTG
66 TTAAACTTAAACCAGATAAGTG
*
37976074 TAAAATCATCAATGCATAAAAACTTATAAAATATAGAACTTGACTGATGCATTTTAACAAATTGT
1 TAAAATCATCAATGCATAAAAACTTATAAAATATAGAACTTGACTGATGCACTTTAACAAATTGT
37976139 TTAAACTTAAACCAGATAAGTG
66 TTAAACTTAAACCAGATAAGTG
*
37976161 TAATATCA
1 TAAAATCA
37976169 ATGTTAGTCA
Statistics
Matches: 93, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 93 1.00
ACGTcount: A:0.46, C:0.13, G:0.10, T:0.31
Consensus pattern (87 bp):
TAAAATCATCAATGCATAAAAACTTATAAAATATAGAACTTGACTGATGCACTTTAACAAATTGT
TTAAACTTAAACCAGATAAGTG
Found at i:37978602 original size:13 final size:14
Alignment explanation
Indices: 37978586--37978614 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
37978576 TATATATTAT
37978586 TAAAATATTAA-TA
1 TAAAATATTAAGTA
37978599 TAAAATATTAAGTA
1 TAAAATATTAAGTA
37978613 TA
1 TA
37978615 TATTTAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (14 bp):
TAAAATATTAAGTA
Found at i:37978658 original size:19 final size:19
Alignment explanation
Indices: 37978618--37978668 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
37978608 AAGTATATAT
* *
37978618 TTAAATTTAAAA-TTATTT
1 TTAAAATTAAAATTTATTA
**
37978636 TTAATGTTAAAATTTATTA
1 TTAAAATTAAAATTTATTA
37978655 TTAAAATTAAAATT
1 TTAAAATTAAAATT
37978669 GTAATTTTAA
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
18 10 0.37
19 17 0.63
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (19 bp):
TTAAAATTAAAATTTATTA
Found at i:37978757 original size:13 final size:15
Alignment explanation
Indices: 37978722--37978752 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
37978712 TGTATGTTTA
37978722 ATAATATTGAAAATT
1 ATAATATTGAAAATT
*
37978737 ATAATATTTAAAATT
1 ATAATATTGAAAATT
37978752 A
1 A
37978753 ATATTATATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (15 bp):
ATAATATTGAAAATT
Found at i:37979312 original size:10 final size:10
Alignment explanation
Indices: 37979297--37979321 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
37979287 TACGCCCTTT
37979297 TATATTTATA
1 TATATTTATA
37979307 TATATTTATA
1 TATATTTATA
37979317 TATAT
1 TATAT
37979322 ATATTTCGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TATATTTATA
Found at i:37980351 original size:11 final size:11
Alignment explanation
Indices: 37980337--37980366 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
37980327 TTTTATTTTT
37980337 TAATTTTAAAA
1 TAATTTTAAAA
37980348 TAATTTTAAAA
1 TAATTTTAAAA
*
37980359 TATTTTTA
1 TAATTTTA
37980367 TTTTTTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (11 bp):
TAATTTTAAAA
Found at i:37980399 original size:26 final size:24
Alignment explanation
Indices: 37980351--37980401 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 24
37980341 TTTAAAATAA
* *
37980351 TTTTAAAATATTTTTATTTTTTAT
1 TTTTAAAATATTTTTAATGTTTAT
37980375 TTTTAAAATAACTTTTTAATGTTTAT
1 TTTTAAAAT-A-TTTTTAATGTTTAT
37980401 T
1 T
37980402 AAAAAATGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 9 0.39
25 1 0.04
26 13 0.57
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (24 bp):
TTTTAAAATATTTTTAATGTTTAT
Found at i:37981901 original size:43 final size:43
Alignment explanation
Indices: 37981829--37981954 Score: 134
Period size: 43 Copynumber: 2.9 Consensus size: 43
37981819 AGGATTTCAT
37981829 TATGTG-TTATCGTGTAAGACCACGTCTGGGACGTTGGCATCGAC
1 TATGTGATTA-CGTGTAAGACCACGTCTGGGACGTTGGCATCG-C
** * *
37981873 T-TGTGACTTA-GTGTAAGACCTTGTCTGGGATAG-TGGCATCGT
1 TATGTGA-TTACGTGTAAGACCACGTCTGGGA-CGTTGGCATCGC
* *
37981915 TATGTGATTACATGTAAGACCACGTCTAGGACGTTGGCAT
1 TATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCAT
37981955 TGTACGAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
42 5 0.07
43 57 0.85
44 2 0.03
45 3 0.04
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.32
Consensus pattern (43 bp):
TATGTGATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGC
Done.