Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 130 of 173
Found at i:39704165 original size:16 final size:17
Alignment explanation
Indices: 39704129--39704165 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
39704119 AATTTTATTT
*
39704129 TAATAATAAATTTTAAA
1 TAATAATAAATTTGAAA
39704146 -AATAAT-AATTTGAAA
1 TAATAATAAATTTGAAA
39704161 TAATA
1 TAATA
39704166 TTCTTCATAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.59, C:0.00, G:0.03, T:0.38
Consensus pattern (17 bp):
TAATAATAAATTTGAAA
Found at i:39704340 original size:29 final size:30
Alignment explanation
Indices: 39704307--39704368 Score: 85
Period size: 29 Copynumber: 2.1 Consensus size: 30
39704297 ATGAATTTAC
39704307 AATTTAGT-CTCTTTACTTTT-AT-TTTCAAG
1 AATTTAGTCCT-TTTACTTTTCATATTT-AAG
39704336 AATTTAGTCCTTTTACTTTTCATATTTAAG
1 AATTTAGTCCTTTTACTTTTCATATTTAAG
39704366 AAT
1 AAT
39704369 CAAGTCCAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
29 17 0.57
30 10 0.33
31 3 0.10
ACGTcount: A:0.27, C:0.13, G:0.06, T:0.53
Consensus pattern (30 bp):
AATTTAGTCCTTTTACTTTTCATATTTAAG
Found at i:39704375 original size:30 final size:29
Alignment explanation
Indices: 39704318--39704375 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
39704308 ATTTAGTCTC
**
39704318 TTTACTTTTATTTTCAAGAATTTAGTCCT
1 TTTACTTTTATTTTCAAGAATCAAGTCCT
39704347 TTTACTTTTCATATTT-AAGAATCAAGTCC
1 TTTACTTTT-AT-TTTCAAGAATCAAGTCC
39704376 AATTATTGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 9 0.36
30 13 0.52
31 3 0.12
ACGTcount: A:0.28, C:0.16, G:0.07, T:0.50
Consensus pattern (29 bp):
TTTACTTTTATTTTCAAGAATCAAGTCCT
Found at i:39704879 original size:18 final size:17
Alignment explanation
Indices: 39704845--39704885 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
39704835 TTTTACAAAT
* *
39704845 ATTTAATTATCTATATA
1 ATTTTATTATATATATA
39704862 ATTTTATTATATATTATA
1 ATTTTATTATATA-TATA
39704880 ATTTTA
1 ATTTTA
39704886 AAATTTTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 11 0.52
18 10 0.48
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTTATTATATATATA
Found at i:39714784 original size:20 final size:21
Alignment explanation
Indices: 39714759--39714797 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
39714749 ATTCAATCGA
39714759 AGATAATTA-ATTATTTAACT
1 AGATAATTAGATTATTTAACT
*
39714779 AGATAATTAGTTTATTTAA
1 AGATAATTAGATTATTTAA
39714798 TTGATTATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.44, C:0.03, G:0.08, T:0.46
Consensus pattern (21 bp):
AGATAATTAGATTATTTAACT
Found at i:39723016 original size:32 final size:32
Alignment explanation
Indices: 39722975--39723040 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
39722965 ATTTTGGGAC
39722975 ATAGAAAAACAAATATCGAGTTGGATCAAACT
1 ATAGAAAAACAAATATCGAGTTGGATCAAACT
39723007 ATAGAAAAACAAATATCGAGTTGGATCAAACT
1 ATAGAAAAACAAATATCGAGTTGGATCAAACT
39723039 AT
1 AT
39723041 TAATGTTCTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.50, C:0.12, G:0.15, T:0.23
Consensus pattern (32 bp):
ATAGAAAAACAAATATCGAGTTGGATCAAACT
Found at i:39729248 original size:29 final size:29
Alignment explanation
Indices: 39729188--39729262 Score: 75
Period size: 27 Copynumber: 2.7 Consensus size: 29
39729178 TTTGTGAATT
*
39729188 ATTTTTATTTTATATAA--AAATTTACTT
1 ATTTTTATTTTATATAATTAAATTTACTA
*
39729215 ATTTTTATTTTATATAATTGATATTTA-TA
1 ATTTTTATTTTATATAATT-AAATTTACTA
* * *
39729244 ATTTTAAATTTATAAAATT
1 ATTTTTATTTTATATAATT
39729263 TGTGATATAT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
27 17 0.43
29 17 0.43
30 6 0.15
ACGTcount: A:0.39, C:0.01, G:0.01, T:0.59
Consensus pattern (29 bp):
ATTTTTATTTTATATAATTAAATTTACTA
Found at i:39729354 original size:24 final size:25
Alignment explanation
Indices: 39729309--39729369 Score: 70
Period size: 24 Copynumber: 2.4 Consensus size: 25
39729299 TTTAGAGAAT
* *
39729309 TTTTATATTCTTTTTAAATTTATATA
1 TTTTATA-TATTTTTAAATTTAGATA
*
39729335 TTTTATATATTTTT-ATTTTAGATA
1 TTTTATATATTTTTAAATTTAGATA
*
39729359 ATTTATATATT
1 TTTTATATATT
39729370 ATAAAGAAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 18 0.58
25 6 0.19
26 7 0.23
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (25 bp):
TTTTATATATTTTTAAATTTAGATA
Found at i:39729425 original size:34 final size:31
Alignment explanation
Indices: 39729376--39729459 Score: 82
Period size: 34 Copynumber: 2.6 Consensus size: 31
39729366 TATTATAAAG
*
39729376 AAATTA-AAAAATTTTAATATAATAAT-TTTT
1 AAATTATAATAATTTTAATATAAT-ATGTTTT
* *
39729406 ATAATTATATATATATTTTAATTTTATATGTTTT
1 A-AATTATA-ATA-ATTTTAATATAATATGTTTT
*
39729440 AAATTTTAATAATTTTAATA
1 AAATTATAATAATTTTAATA
39729460 GATGACATGC
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
30 1 0.02
31 13 0.30
32 4 0.09
33 10 0.23
34 16 0.36
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (31 bp):
AAATTATAATAATTTTAATATAATATGTTTT
Found at i:39729427 original size:17 final size:16
Alignment explanation
Indices: 39729386--39729458 Score: 53
Period size: 16 Copynumber: 4.5 Consensus size: 16
39729376 AAATTAAAAA
39729386 ATTTTAA-TATAATAAT
1 ATTTTAATTATAAT-AT
*
39729402 TTTTATAATTATATATAT
1 ATTT-TAATTATA-ATAT
*
39729420 ATTTTAATT-TTATAT
1 ATTTTAATTATAATAT
* *
39729435 GTTTTAAATTTTAATA-
1 ATTTT-AATTATAATAT
39729451 ATTTTAAT
1 ATTTTAAT
39729459 AGATGACATG
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
15 11 0.24
16 12 0.26
17 12 0.26
18 9 0.20
19 2 0.04
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.59
Consensus pattern (16 bp):
ATTTTAATTATAATAT
Found at i:39729439 original size:15 final size:16
Alignment explanation
Indices: 39729415--39729457 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
39729405 TATAATTATA
39729415 TATATATTTT-AATTT
1 TATATATTTTAAATTT
*
39729430 TATATGTTTTAAATTT
1 TATATATTTTAAATTT
39729446 TA-ATAATTTTAA
1 TATAT-ATTTTAA
39729458 TAGATGACAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 11 0.46
16 13 0.54
ACGTcount: A:0.37, C:0.00, G:0.02, T:0.60
Consensus pattern (16 bp):
TATATATTTTAAATTT
Found at i:39729446 original size:16 final size:15
Alignment explanation
Indices: 39729415--39729458 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
39729405 TATAATTATA
39729415 TATATATTTTAATTT
1 TATATATTTTAATTT
*
39729430 TATATGTTTTAAATTT
1 TATATATTTT-AATTT
39729446 TA-ATAATTTTAAT
1 TATAT-ATTTTAAT
39729459 AGATGACATG
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
15 14 0.56
16 11 0.44
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (15 bp):
TATATATTTTAATTT
Found at i:39735176 original size:19 final size:19
Alignment explanation
Indices: 39735130--39735177 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
39735120 TTTTATTTAT
* *
39735130 TTTATAAAATTTTATGTAC
1 TTTATAAAATTTTAGGAAC
39735149 TTCTATAAAATTTT-GGAATC
1 TT-TATAAAATTTTAGGAA-C
39735169 TTTATAAAA
1 TTTATAAAA
39735178 ATATTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 11 0.44
20 14 0.56
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (19 bp):
TTTATAAAATTTTAGGAAC
Found at i:39735484 original size:30 final size:30
Alignment explanation
Indices: 39735448--39735535 Score: 108
Period size: 29 Copynumber: 3.0 Consensus size: 30
39735438 TTAGAATAAT
39735448 GACTAAATTGATAGAATGTGTAAATATTGG
1 GACTAAATTGATAGAATGTGTAAATATTGG
* * * * *
39735478 GCCTAAATTTGTTAAAAT-TTTAAA-ATTAG
1 GACTAAA-TTGATAGAATGTGTAAATATTGG
39735507 GACTAAATTGATAGAATGTGTAAATATTG
1 GACTAAATTGATAGAATGTGTAAATATTG
39735536 AAAAACTAAA
Statistics
Matches: 45, Mismatches: 10, Indels: 6
0.74 0.16 0.10
Matches are distributed among these distances:
28 8 0.18
29 15 0.33
30 14 0.31
31 8 0.18
ACGTcount: A:0.41, C:0.05, G:0.18, T:0.36
Consensus pattern (30 bp):
GACTAAATTGATAGAATGTGTAAATATTGG
Found at i:39738575 original size:15 final size:15
Alignment explanation
Indices: 39738555--39738586 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
39738545 CATTTCACTA
*
39738555 TTATGTCTTTTATGT
1 TTATGTCTTTCATGT
39738570 TTATGTCTTTCATGT
1 TTATGTCTTTCATGT
39738585 TT
1 TT
39738587 TGCTTGTAGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.12, C:0.09, G:0.12, T:0.66
Consensus pattern (15 bp):
TTATGTCTTTCATGT
Found at i:39740187 original size:68 final size:68
Alignment explanation
Indices: 39739941--39740191 Score: 286
Period size: 68 Copynumber: 3.7 Consensus size: 68
39739931 AGTACGTCAA
* * * * * *
39739941 GACATTAAACATGGGTTCATAATGTGTACGACCATATCTCGACTATGGCAACATATGGAGTTCGC
1 GACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTCGGCTATGACAACATATGGAGTCCAC
39740006 TAG
66 TAG
*** * * ***
39740009 GACATTAAACATCAATTCATAATATGTAAGACCATAGCTCAGCTATGACAACATAAAAAGTCCAC
1 GACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTCGGCTATGACAACATATGGAGTCCAC
* *
39740074 CAA
66 TAG
* * *
39740077 GACATTAAACATGGGTTCATAATGTGTAAGACCATAGTTTGGCTATGACAACATATGGTGTCCAC
1 GACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTCGGCTATGACAACATATGGAGTCCAC
39740142 TAG
66 TAG
* * * * *
39740145 GACATTAAATAGGGGTTCATATTGTGTAAGACCACAGCTTGGCTATG
1 GACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTCGGCTATG
39740192 CCAGTATGTG
Statistics
Matches: 149, Mismatches: 34, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
68 149 1.00
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (68 bp):
GACATTAAACATGGGTTCATAATGTGTAAGACCATAGCTCGGCTATGACAACATATGGAGTCCAC
TAG
Found at i:39740207 original size:136 final size:136
Alignment explanation
Indices: 39739938--39740183 Score: 341
Period size: 136 Copynumber: 1.8 Consensus size: 136
39739928 AGAAGTACGT
* * *
39739938 CAAGACATTAAACATGGGTTCATAATGTGTACGACCATATCTCGACTATGGCAACATATGGAGTT
1 CAAGACATTAAACATGGGTTCATAATGTGTAAGACCATATCTCGACTATGACAACATATGGAGTC
* * *
39740003 CGCTAGGACATTAAACATCAATTCATAATATGTAAGACCATAGCTCAGCTATGACAACATAAAAA
66 CACTAGGACATTAAACAGCAATTCATAATATGTAAGACCACAGCTCAGCTATGACAACATAAAAA
39740068 GTCCAC
131 GTCCAC
* * *
39740074 CAAGACATTAAACATGGGTTCATAATGTGTAAGACCATAGT-TTGGCTATGACAACATATGGTGT
1 CAAGACATTAAACATGGGTTCATAATGTGTAAGACCATA-TCTCGACTATGACAACATATGGAGT
* *** * *
39740138 CCACTAGGACATTAAATAGGGGTTCATATTGTGTAAGACCACAGCT
65 CCACTAGGACATTAAACAGCAATTCATAATATGTAAGACCACAGCT
39740184 TGGCTATGCC
Statistics
Matches: 94, Mismatches: 15, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
136 93 0.99
137 1 0.01
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.26
Consensus pattern (136 bp):
CAAGACATTAAACATGGGTTCATAATGTGTAAGACCATATCTCGACTATGACAACATATGGAGTC
CACTAGGACATTAAACAGCAATTCATAATATGTAAGACCACAGCTCAGCTATGACAACATAAAAA
GTCCAC
Found at i:39748363 original size:68 final size:68
Alignment explanation
Indices: 39748241--39748425 Score: 228
Period size: 68 Copynumber: 2.7 Consensus size: 68
39748231 TAAATCTGAA
* * * **
39748241 TTCATAATGTGTAAGACCATAGCTCGACTAT-TACAACATATAGAGTCCGTCAGGACATTAAACA
1 TTCATAATGTGTAAGACCATAGCTCGATTATGGA-AACATATGGAGTCCACCAGGACATTAAACA
*
39748305 TGGG
65 TGGC
** * *
39748309 TTGTTAATATGTAAGACCATAGCTCGGTTATGGAAACATATGGAGTCCACCAGGACATTAAACAT
1 TTCATAATGTGTAAGACCATAGCTCGATTATGGAAACATATGGAGTCCACCAGGACATTAAACAT
39748374 GGC
66 GGC
* * * *
39748377 TTCATATTGTGTAAGACCATAGCTCGATTATGGTAGCATATGAAGTCCA
1 TTCATAATGTGTAAGACCATAGCTCGATTATGGAAACATATGGAGTCCA
39748426 TCAAGATGGT
Statistics
Matches: 98, Mismatches: 18, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
68 97 0.99
69 1 0.01
ACGTcount: A:0.34, C:0.18, G:0.21, T:0.28
Consensus pattern (68 bp):
TTCATAATGTGTAAGACCATAGCTCGATTATGGAAACATATGGAGTCCACCAGGACATTAAACAT
GGC
Found at i:39751600 original size:42 final size:43
Alignment explanation
Indices: 39751491--39751604 Score: 119
Period size: 42 Copynumber: 2.7 Consensus size: 43
39751481 AAAGTCCGTA
39751491 CAATGCCAACATCCCAGACGTGGTCTTACATGTAATCACATAT
1 CAATGCCAACATCCCAGACGTGGTCTTACATGTAATCACATAT
* ** **
39751534 CAAT--TATATGTCCCAGACAAGGTCTTACATG-AATCACA-AGT
1 CAATGCCA-ACATCCCAGACGTGGTCTTACATGTAATCACATA-T
* *
39751575 CGATGCCAACATCCCAGATGTGGTCTTACA
1 CAATGCCAACATCCCAGACGTGGTCTTACA
39751605 CAAAAACACA
Statistics
Matches: 55, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
40 1 0.02
41 12 0.22
42 37 0.67
43 5 0.09
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (43 bp):
CAATGCCAACATCCCAGACGTGGTCTTACATGTAATCACATAT
Found at i:39754263 original size:19 final size:19
Alignment explanation
Indices: 39754221--39754266 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
39754211 TTTTATTTAG
*
39754221 GTTTAAATGAAAATTTGAC
1 GTTTAAATGAAAATTTAAC
39754240 GTTTAAATGAAAATTTAATC
1 GTTTAAATGAAAATTTAA-C
39754260 -TTTAAAT
1 GTTTAAAT
39754267 TATAGTATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 24 0.96
20 1 0.04
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.41
Consensus pattern (19 bp):
GTTTAAATGAAAATTTAAC
Found at i:39755421 original size:306 final size:304
Alignment explanation
Indices: 39754869--39755483 Score: 1212
Period size: 305 Copynumber: 2.0 Consensus size: 304
39754859 AAAGCGTAAA
39754869 TCATTTTACTAAATCTAGGTTTGCTTTTAATTTGTTTTTTTTTTCAATTTTGTTTTGTTTATAAT
1 TCATTTTACTAAATCTAGGTTTGCTTTTAATTTGTTTTTTTTTTCAATTTTGTTTTGTTTATAAT
39754934 TCTGTTTGTTTTTTTTACTCTCGTAGACTCATCTTCAATGGGTTAGCTTGTATTTTAATTGAGAG
66 TCTGTTTGTTTTTTTTACTCTCGTAGACTCATCTTCAATGGGTTAGCTTGTATTTTAATTGAGAG
39754999 GCTAGTTTCTCAAAAAAAACTCTAACTGAGAGGCTAGTTTCTCGCTTCTTTTTTTTATTAGAACT
131 GCTAGTTTCTCAAAAAAAACTCTAACTGAGAGGCTAGTTTCTCGCTTCTTTTTTTTATTAGAACT
39755064 GGGGCTAATTATATTTATAACAAATTCGACTATTTAGAGATAGATTTTATTTCCTTAGATTTATT
196 GGGGCTAATTATATTTATAACAAATTCGACTATTTAGAGATAGATTTTATTTCCTTAGATTTATT
39755129 TCTTGTAGATTGTATAATAGTACATATTTTCTCAATTCCCATTT
261 TCTTGTAGATTGTATAATAGTACATATTTTCTCAATTCCCATTT
39755173 TCATTTTACTAAATCTAGGTTTGCTTTTAATTTGTTTTTTTTTTTCAATTTTGTTTTGTTTATAA
1 TCATTTTACTAAATCTAGGTTTGCTTTTAATTTG-TTTTTTTTTTCAATTTTGTTTTGTTTATAA
39755238 TTCTGTTTGTTTTTTTTACTCTCGTAGACTCATCTTCAATGGGTTAGCTTGTATTTTAATTGAGA
65 TTCTGTTTGTTTTTTTTACTCTCGTAGACTCATCTTCAATGGGTTAGCTTGTATTTTAATTGAGA
39755303 GGCTAGTTTCTCAAAAAAAACTCTAACTGAGAGGCTAGTTTCTCGCTTCTTTTTTTTTATTAGAA
130 GGCTAGTTTCTCAAAAAAAACTCTAACTGAGAGGCTAGTTTCTCGCTTC-TTTTTTTTATTAGAA
39755368 CTGGGGCTAATTATATTTATAACAAATTCGACTATTTAGAGATAGATTTTATTTCCTTAGATTTA
194 CTGGGGCTAATTATATTTATAACAAATTCGACTATTTAGAGATAGATTTTATTTCCTTAGATTTA
39755433 TTTCTTGTAGATTGTATAATAGTACATATTTTCTCAATTCCCATTT
259 TTTCTTGTAGATTGTATAATAGTACATATTTTCTCAATTCCCATTT
39755479 TCATT
1 TCATT
39755484 ATAATTATCA
Statistics
Matches: 309, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
304 34 0.11
305 144 0.47
306 131 0.42
ACGTcount: A:0.25, C:0.13, G:0.13, T:0.49
Consensus pattern (304 bp):
TCATTTTACTAAATCTAGGTTTGCTTTTAATTTGTTTTTTTTTTCAATTTTGTTTTGTTTATAAT
TCTGTTTGTTTTTTTTACTCTCGTAGACTCATCTTCAATGGGTTAGCTTGTATTTTAATTGAGAG
GCTAGTTTCTCAAAAAAAACTCTAACTGAGAGGCTAGTTTCTCGCTTCTTTTTTTTATTAGAACT
GGGGCTAATTATATTTATAACAAATTCGACTATTTAGAGATAGATTTTATTTCCTTAGATTTATT
TCTTGTAGATTGTATAATAGTACATATTTTCTCAATTCCCATTT
Found at i:39758452 original size:31 final size:29
Alignment explanation
Indices: 39758391--39758453 Score: 72
Period size: 31 Copynumber: 2.1 Consensus size: 29
39758381 CCTCTCAATT
***
39758391 TTTTTGAAAATTTTAAATCTCACTTCAAA
1 TTTTTGAAAATTTTAAATCTCACAAAAAA
*
39758420 TTTTTGAAAATCTTATTAATCTCACAAAAAA
1 TTTTTGAAAAT-TT-TAAATCTCACAAAAAA
39758451 TTT
1 TTT
39758454 AAATATTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
29 11 0.39
30 2 0.07
31 15 0.54
ACGTcount: A:0.40, C:0.13, G:0.03, T:0.44
Consensus pattern (29 bp):
TTTTTGAAAATTTTAAATCTCACAAAAAA
Found at i:39766476 original size:29 final size:30
Alignment explanation
Indices: 39766443--39766503 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 30
39766433 GTAACATGGT
* *
39766443 TGCTTAAATTGTAAACTTTTTAT-TTTGAG
1 TGCTTAAATTGAAAACTTTTTATAGTTGAG
* *
39766472 TGCTTACATTGAAAATTTTTTATAGTTGAG
1 TGCTTAAATTGAAAACTTTTTATAGTTGAG
39766502 TG
1 TG
39766504 ACTATCTGTG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
29 20 0.74
30 7 0.26
ACGTcount: A:0.28, C:0.07, G:0.16, T:0.49
Consensus pattern (30 bp):
TGCTTAAATTGAAAACTTTTTATAGTTGAG
Found at i:39770995 original size:2 final size:2
Alignment explanation
Indices: 39770990--39771018 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
39770980 AAAAAAGGGA
39770990 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
39771019 ATCAATATGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:39772505 original size:18 final size:17
Alignment explanation
Indices: 39772472--39772505 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
39772462 TCAATTTCCT
*
39772472 TCCATATTTCTCTCAAA
1 TCCATATTTATCTCAAA
39772489 TCCATATTTAATCTCAA
1 TCCATATTT-ATCTCAA
39772506 TTTGCTCTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.32, C:0.26, G:0.00, T:0.41
Consensus pattern (17 bp):
TCCATATTTATCTCAAA
Found at i:39774381 original size:18 final size:18
Alignment explanation
Indices: 39774358--39774392 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
39774348 CAGGTGCGTT
*
39774358 TCCTAACCCTTTTATGTA
1 TCCTAACCCTTATATGTA
39774376 TCCTAACCCTTATATGT
1 TCCTAACCCTTATATGT
39774393 TTCTTTTTCC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.43
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:39774972 original size:27 final size:27
Alignment explanation
Indices: 39774949--39775006 Score: 82
Period size: 26 Copynumber: 2.1 Consensus size: 27
39774939 ACAAACCTTA
*
39774949 AACCCTTAACA-AAAAACCCTAACCCT
1 AACCCTTAAAATAAAAACCCTAACCCT
39774975 AACCCTTAAAATAAAAACCCTAAACCCAT
1 AACCCTTAAAATAAAAACCCT-AACCC-T
39775004 AAC
1 AAC
39775007 TTAAAAACCA
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
26 10 0.36
27 9 0.32
28 5 0.18
29 4 0.14
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (27 bp):
AACCCTTAAAATAAAAACCCTAACCCT
Found at i:39774993 original size:21 final size:21
Alignment explanation
Indices: 39774969--39775987 Score: 1096
Period size: 21 Copynumber: 47.2 Consensus size: 21
39774959 AAAAAACCCT
*
39774969 AACCCTAACCCTTAAAATAAA
1 AACCCTAACCCTTAAATTAAA
* *
39774990 AACCCTAAACCCATAACTTAAA
1 AACCCT-AACCCTTAAATTAAA
* *
39775012 AACCATAACCCTTAAATTAAT
1 AACCCTAACCCTTAAATTAAA
*
39775033 AACCCTAACCCTTAAATTAAT
1 AACCCTAACCCTTAAATTAAA
*
39775054 AACCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAAATTAAA
* * *
39775076 AACCATAAACCTTTAACTTAAAAACCA
1 AACCCT-AACCCTTAAATT---AA--A
*
39775103 TAACCCTAACCATTAAATTAAA
1 -AACCCTAACCCTTAAATTAAA
* **
39775125 AACCTTAACCCTTAGCTTAAA
1 AACCCTAACCCTTAAATTAAA
*
39775146 AACCTTAACCCTT-AATTAAA
1 AACCCTAACCCTTAAATTAAA
*
39775166 AACCCTAAACCCTTAAAGTAAA
1 AACCCT-AACCCTTAAATTAAA
* * *
39775188 AACCATAAACCTTTAACTTAAA
1 AACCCT-AACCCTTAAATTAAA
39775210 AACCCTAACCCTAACCATTAAATTAAA
1 AACCCTAA--C---CC-TTAAATTAAA
*
39775237 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAA
*
39775258 AACCCAAACCCTTAAATT-AA
1 AACCCTAACCCTTAAATTAAA
* * *
39775278 AACCCATAAACCTTAACTTAAT
1 AACCC-TAACCCTTAAATTAAA
*
39775300 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAA
* *
39775321 AACCCTAAACCCTTGACTTAAA
1 AACCCT-AACCCTTAAATTAAA
*
39775343 AATCCTAACCCTTAAATTAAA
1 AACCCTAACCCTTAAATTAAA
* *
39775364 AACCATAAACCTTAAATTAAA
1 AACCCTAACCCTTAAATTAAA
*
39775385 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAA
39775406 AACCCTAACCCTT-AATTAAA
1 AACCCTAACCCTTAAATTAAA
*
39775426 AACCTTAACCCTTAAATTAAA
1 AACCCTAACCCTTAAATTAAA
*
39775447 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAA
*
39775468 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAA
*
39775489 AACCCTAACCTTTAAATTAAA
1 AACCCTAACCCTTAAATTAAA
* * *
39775510 AACCCTAAACCTTAACTGAAA
1 AACCCTAACCCTTAAATTAAA
* * *
39775531 AACCATAAACCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAA
* *
39775552 AACCTTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAAATTAAA
39775574 AACCCTAACCCTT-AATTAAA
1 AACCCTAACCCTTAAATTAAA
39775594 AACCCTAACCCTTAAATTAAA
1 AACCCTAACCCTTAAATTAAA
39775615 AACCCTAAACCCTT-AA-TACAA
1 AACCCT-AACCCTTAAATTA-AA
* *
39775636 CTATACCCTAAACCTTTAACTTAAAAA
1 --A-ACCCT-AACCCTTAAATT--AAA
*
39775663 TCCTAACCCTAACCATTAAATTAAA
1 ----AACCCTAACCCTTAAATTAAA
*
39775688 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAA
*
39775709 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAA
* *
39775730 AACCCTAACCATAAAATTAAA
1 AACCCTAACCCTTAAATTAAA
*
39775751 AACCCTAAACCTTAAATTAAA
1 AACCCTAACCCTTAAATTAAA
*
39775772 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAA
*
39775793 AACCCTAACCATTAAATTAAA
1 AACCCTAACCCTTAAATTAAA
*
39775814 AACCCTAAACCTTAAATTAAA
1 AACCCTAACCCTTAAATTAAA
*
39775835 AACCCTAACCCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAA
*
39775856 AACCCTAACCCTTAAATTGAA
1 AACCCTAACCCTTAAATTAAA
*
39775877 AACCTTAACCCTTAAATTAAA
1 AACCCTAACCCTTAAATTAAA
* * *
39775898 AACCCTAAACCTTAACTTAAT
1 AACCCTAACCCTTAAATTAAA
* *
39775919 AACCTTAACCCTTAACTTAAA
1 AACCCTAACCCTTAAATTAAA
* * *
39775940 AACCTTAAAACCTTAACTTAAA
1 AACCCT-AACCCTTAAATTAAA
*
39775962 AACCCTAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAAATTAAA
39775984 AACC
1 AACC
39775988 TTGAGGTTTT
Statistics
Matches: 865, Mismatches: 99, Indels: 67
0.84 0.10 0.06
Matches are distributed among these distances:
20 56 0.06
21 562 0.65
22 168 0.19
23 2 0.00
24 14 0.02
25 7 0.01
26 2 0.00
27 40 0.05
28 11 0.01
29 3 0.00
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (21 bp):
AACCCTAACCCTTAAATTAAA
Found at i:39775009 original size:27 final size:26
Alignment explanation
Indices: 39774952--39775012 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
39774942 AACCTTAAAC
*
39774952 CCTTAACA-AAAAACCCTAACCCTAA
1 CCTTAAAATAAAAACCCTAACCCTAA
39774977 CCCTTAAAATAAAAACCCTAAACCCATAA
1 -CCTTAAAATAAAAACCCT-AACCC-TAA
39775006 -CTTAAAA
1 CCTTAAAA
39775013 ACCATAACCC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
26 7 0.23
27 16 0.52
28 5 0.16
29 3 0.10
ACGTcount: A:0.51, C:0.31, G:0.00, T:0.18
Consensus pattern (26 bp):
CCTTAAAATAAAAACCCTAACCCTAA
Found at i:39775113 original size:27 final size:27
Alignment explanation
Indices: 39775052--39775136 Score: 90
Period size: 27 Copynumber: 3.3 Consensus size: 27
39775042 CCTTAAATTA
*
39775052 ATAACCCTAAACCCTTAACTTAAAAACC
1 ATAACCCT-AACCATTAACTTAAAAACC
*
39775080 AT-A----AACCTTTAACTTAAAAACC
1 ATAACCCTAACCATTAACTTAAAAACC
*
39775102 ATAACCCTAACCATTAAATTAAAAACC
1 ATAACCCTAACCATTAACTTAAAAACC
*
39775129 TTAACCCT
1 ATAACCCT
39775137 TAGCTTAAAA
Statistics
Matches: 48, Mismatches: 4, Indels: 11
0.76 0.06 0.17
Matches are distributed among these distances:
22 20 0.42
23 1 0.02
27 25 0.52
28 2 0.04
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (27 bp):
ATAACCCTAACCATTAACTTAAAAACC
Found at i:39775225 original size:27 final size:27
Alignment explanation
Indices: 39775195--39775248 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
39775185 AAAAACCATA
* *
39775195 AACCTTTAACTTAAAAACCCTAACCCT
1 AACCATTAAATTAAAAACCCTAACCCT
39775222 AACCATTAAATTAAAAACCCTAACCCT
1 AACCATTAAATTAAAAACCCTAACCCT
39775249 TAACTTAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.44, C:0.31, G:0.00, T:0.24
Consensus pattern (27 bp):
AACCATTAAATTAAAAACCCTAACCCT
Found at i:39775681 original size:27 final size:28
Alignment explanation
Indices: 39775640--39775699 Score: 86
Period size: 27 Copynumber: 2.2 Consensus size: 28
39775630 ATACAACTAT
* * *
39775640 ACCCTAAACCTTTAACTTAAAAATCCTA
1 ACCCTAAACCATTAAATTAAAAACCCTA
39775668 ACCCT-AACCATTAAATTAAAAACCCTA
1 ACCCTAAACCATTAAATTAAAAACCCTA
39775695 ACCCT
1 ACCCT
39775700 TAACTTAAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 24 0.83
28 5 0.17
ACGTcount: A:0.43, C:0.32, G:0.00, T:0.25
Consensus pattern (28 bp):
ACCCTAAACCATTAAATTAAAAACCCTA
Found at i:39776195 original size:114 final size:114
Alignment explanation
Indices: 39775995--39776263 Score: 502
Period size: 114 Copynumber: 2.4 Consensus size: 114
39775985 ACCTTGAGGT
* *
39775995 TTTTACTAACCATTAATGCAATTATCAGTTAATAATTTTACATTCACATAATGTTAGATTTGGAA
1 TTTTACTAACCATTAATACAATTATCAGTTAATAATTTTAAATTCACATAATGTTAGATTTGGAA
39776060 AAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGATAA
66 AAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGATAA
39776109 TTTTACTAACCATTAATACAATTATCAGTTAATAATTTTAAATTCACATAATGTTAGATTTGGAA
1 TTTTACTAACCATTAATACAATTATCAGTTAATAATTTTAAATTCACATAATGTTAGATTTGGAA
39776174 AAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGATAA
66 AAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGATAA
*
39776223 TTTTACTAACCATTAATACAATTTATCAATTAATAATTTTA
1 TTTTACTAACCATTAATACAA-TTATCAGTTAATAATTTTA
39776264 CAAATATAAA
Statistics
Matches: 151, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
114 133 0.88
115 18 0.12
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.42
Consensus pattern (114 bp):
TTTTACTAACCATTAATACAATTATCAGTTAATAATTTTAAATTCACATAATGTTAGATTTGGAA
AAATGTTTTGACTGGTACTAACAATTAATAATTTGATATAATTTGATAA
Found at i:39779584 original size:125 final size:124
Alignment explanation
Indices: 39779269--39779781 Score: 810
Period size: 125 Copynumber: 4.1 Consensus size: 124
39779259 CCCAAACATG
*
39779269 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCAAAATTTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCAAAAATTCTTCTCAAATAGCATCCTGC
*
39779334 TAGAAGCAATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTTTTCCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTTTTCCAGGAC
* * * *
39779393 CTACTGTAGCAAAAGCGCGTCCATGAGGGCACAATTTCATAAATTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCAAAAATTCTTCTCAAATAGCATCCTGC
**
39779458 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTTGAAATTATTTCTTCCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTT-TTCCAGGAC
* *
39779518 CTACTGTAGCAAAAGCGCGTCCACTAGGGCGCGATTTCAAAAATTCTTCTCAAATAGCATCTTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCAAAAATTCTTCTCAAATAGCATCCTGC
* **
39779583 TAGAAGCGATTTTATACTATTTGCTCAAAAAAATCAAGTCAAAATTATTTCTTCCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTT-TTCCAGGAC
* * * * *
39779643 CTACTGTAGCAAAAGCACGTCCACGAGGGCGCGATTTCACAAATACTTATCAAACAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCAAAAATTCTTCTCAAATAGCATCCTGC
* * * *
39779708 TAGAAGCGATTTTATACTATTTACTCAGAAACGTCAACTCGAAATTATTTTTTCAGGAC
66 TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTTTTCCAGGAC
39779767 CTACTGTAGCAAAAG
1 CTACTGTAGCAAAAG
39779782 TGCATACACA
Statistics
Matches: 355, Mismatches: 33, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
124 130 0.37
125 225 0.63
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (124 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCAAAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTTTTCCAGGAC
Found at i:39779767 original size:249 final size:249
Alignment explanation
Indices: 39779269--39779781 Score: 839
Period size: 249 Copynumber: 2.1 Consensus size: 249
39779259 CCCAAACATG
*
39779269 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCAAAATTTCTTCTCAAATAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCAAAAATTCTTCTCAAATAGCATCCTGC
* **
39779334 TAGAAGCAATTTTATACTATTTGCTCAGAAACGTCAAGTCAAAATTATTTTTCCAGGACCTACTG
66 TAGAAGCAATTTTATACTATTTGCTCAAAAAAATCAAGTCAAAATTATTTTTCCAGGACCTACTG
* * * * * *
39779399 TAGCAAAAGCGCGTCCATGAGGGCACAATTTCATAAATTCTTCTCAAATAGCATCCTGCTAGAAG
131 TAGCAAAAGCACGTCCACGAGGGCACAATTTCACAAATACTTATCAAACAGCATCCTGCTAGAAG
* * *
39779464 CGATTTTATACTATTTGCTCAGAAACGTCAAGTTGAAATTATTTCTTCCAGGAC
196 CGATTTTATACTATTTACTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
* *
39779518 CTACTGTAGCAAAAGCGCGTCCACTAGGGCGCGATTTCAAAAATTCTTCTCAAATAGCATCTTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCAAAAATTCTTCTCAAATAGCATCCTGC
*
39779583 TAGAAGCGATTTTATACTATTTGCTCAAAAAAATCAAGTCAAAATTATTTCTTCCAGGACCTACT
66 TAGAAGCAATTTTATACTATTTGCTCAAAAAAATCAAGTCAAAATTATTT-TTCCAGGACCTACT
* *
39779648 GTAGCAAAAGCACGTCCACGAGGGCGCGATTTCACAAATACTTATCAAACAGCATCCTGCTAGAA
130 GTAGCAAAAGCACGTCCACGAGGGCACAATTTCACAAATACTTATCAAACAGCATCCTGCTAGAA
*
39779713 GCGATTTTATACTATTTACTCAGAAACGTCAACTCGAAATTATTT-TTTCAGGAC
195 GCGATTTTATACTATTTACTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
39779767 CTACTGTAGCAAAAG
1 CTACTGTAGCAAAAG
39779782 TGCATACACA
Statistics
Matches: 244, Mismatches: 19, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
249 131 0.54
250 113 0.46
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (249 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCAAAAATTCTTCTCAAATAGCATCCTGC
TAGAAGCAATTTTATACTATTTGCTCAAAAAAATCAAGTCAAAATTATTTTTCCAGGACCTACTG
TAGCAAAAGCACGTCCACGAGGGCACAATTTCACAAATACTTATCAAACAGCATCCTGCTAGAAG
CGATTTTATACTATTTACTCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
Found at i:39779861 original size:16 final size:16
Alignment explanation
Indices: 39779823--39779865 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
39779813 CTTTTTTTCT
39779823 CAAAAACCCTAAAAATC
1 CAAAAA-CCTAAAAATC
* *
39779840 C-TAAACCTTAAAATC
1 CAAAAACCTAAAAATC
39779855 CAAAAACCTAA
1 CAAAAACCTAA
39779866 CGTGGGAAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 3
0.75 0.14 0.11
Matches are distributed among these distances:
15 10 0.48
16 10 0.48
17 1 0.05
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.16
Consensus pattern (16 bp):
CAAAAACCTAAAAATC
Found at i:39780215 original size:41 final size:40
Alignment explanation
Indices: 39780170--39780259 Score: 103
Period size: 41 Copynumber: 2.2 Consensus size: 40
39780160 GAAGTCATGG
* *
39780170 AAAAAGGATAGAAACGGCAT-AGCATATTAAATATAAAACT
1 AAAAAAGA-AGAAACAGCATAAGCATATTAAATATAAAACT
*
39780210 AAAAAA-AAGAAACAGTATAGCAGCATATTAAATATAAAACT
1 AAAAAAGAAGAAACAGCATA--AGCATATTAAATATAAAACT
*
39780251 GAAAAAGAA
1 AAAAAAGAA
39780260 TGCTAAATAC
Statistics
Matches: 42, Mismatches: 4, Indels: 6
0.81 0.08 0.12
Matches are distributed among these distances:
38 9 0.21
39 1 0.02
40 5 0.12
41 25 0.60
42 2 0.05
ACGTcount: A:0.60, C:0.09, G:0.13, T:0.18
Consensus pattern (40 bp):
AAAAAAGAAGAAACAGCATAAGCATATTAAATATAAAACT
Found at i:39780230 original size:38 final size:39
Alignment explanation
Indices: 39780179--39780256 Score: 104
Period size: 41 Copynumber: 2.0 Consensus size: 39
39780169 GAAAAAGGAT
*
39780179 AGAAACGGCAT-AGCATATTAAATATAAAACTAAAAAAA
1 AGAAACAGCATAAGCATATTAAATATAAAACTAAAAAAA
* *
39780217 AGAAACAGTATAGCAGCATATTAAATATAAAACTGAAAAA
1 AGAAACAGCATA--AGCATATTAAATATAAAACTAAAAAA
39780257 GAATGCTAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
38 9 0.26
41 25 0.74
ACGTcount: A:0.59, C:0.10, G:0.12, T:0.19
Consensus pattern (39 bp):
AGAAACAGCATAAGCATATTAAATATAAAACTAAAAAAA
Found at i:39784104 original size:2 final size:2
Alignment explanation
Indices: 39784097--39784131 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
39784087 TTCAAGACAA
39784097 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
39784132 TCCAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:39799089 original size:26 final size:26
Alignment explanation
Indices: 39799059--39799120 Score: 97
Period size: 26 Copynumber: 2.4 Consensus size: 26
39799049 TACCTACAGT
39799059 AGTTTCAGAATATCATAACATATATC
1 AGTTTCAGAATATCATAACATATATC
* *
39799085 AGTTTCAGAATATCATAGCATGTATC
1 AGTTTCAGAATATCATAACATATATC
*
39799111 AGTTTTAGAA
1 AGTTTCAGAA
39799121 CACTTACAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.39, C:0.13, G:0.13, T:0.35
Consensus pattern (26 bp):
AGTTTCAGAATATCATAACATATATC
Found at i:39813642 original size:19 final size:19
Alignment explanation
Indices: 39813603--39813639 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
39813593 TTATGGATAG
*
39813603 TTAATTAAAGTTTAATTAA
1 TTAATTAAAGCTTAATTAA
39813622 TTAATT-AAGCTTAATTAA
1 TTAATTAAAGCTTAATTAA
39813640 ATTTTAATGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (19 bp):
TTAATTAAAGCTTAATTAA
Found at i:39828294 original size:22 final size:22
Alignment explanation
Indices: 39828263--39828313 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 22
39828253 AAATTGTTTA
*
39828263 ACGACGTGGAAGAAGT-AGCGCC
1 ACGACATGGAAGAAGTGA-CGCC
39828285 ACGACATGGAAGAAGTGACGCC
1 ACGACATGGAAGAAGTGACGCC
*
39828307 ATGACAT
1 ACGACAT
39828314 CGACCTTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
22 25 0.96
23 1 0.04
ACGTcount: A:0.35, C:0.22, G:0.31, T:0.12
Consensus pattern (22 bp):
ACGACATGGAAGAAGTGACGCC
Found at i:39831112 original size:26 final size:26
Alignment explanation
Indices: 39831076--39831125 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
39831066 CTCTAAGAAG
39831076 ATTAACATGAAATACAAGAACAAAAT
1 ATTAACATGAAATACAAGAACAAAAT
39831102 ATTAACATGAAATACAAGAACAAA
1 ATTAACATGAAATACAAGAACAAA
39831126 GAAAATATTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.62, C:0.12, G:0.08, T:0.18
Consensus pattern (26 bp):
ATTAACATGAAATACAAGAACAAAAT
Found at i:39835202 original size:26 final size:26
Alignment explanation
Indices: 39835166--39835218 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
39835156 GTATACGAGT
*
39835166 CAAATTGTAATATAATAATTTTACAG
1 CAAATTGTAATATAATAAGTTTACAG
39835192 CAAATTGTAATATAATAAGTTTACAG
1 CAAATTGTAATATAATAAGTTTACAG
39835218 C
1 C
39835219 GATATACTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (26 bp):
CAAATTGTAATATAATAAGTTTACAG
Found at i:39844826 original size:69 final size:67
Alignment explanation
Indices: 39844752--39844982 Score: 176
Period size: 69 Copynumber: 3.3 Consensus size: 67
39844742 CCAACGATGT
* * *
39844752 TTGCGCCAAGCGCTAGTCGGATAAACCGTCGAATGTGTGCCCAGCACTAGTCAGACAAGCTTACA
1 TTGCGCCCAGCGCTAGTCGGATAAACCATCGAATGTGTGCCCAGCACTAGTCAGACAA-CTAAC-
39844817 AAAG
64 AAAG
* * * * * * ** *
39844821 TTGCGCCCATCGCTAGTCAGATATACTGACAAAATC-AATAGTGAGCCCAGCTCTAATTGGATAA
1 TTGCGCCCAGCGCTAGTCGGATA-A---AC--CATCGAAT-GTGTGCCCAGCACTAGTCAGA-CA
* *
39844885 ACCAACAATG
58 ACTAACAAAG
* * * *
39844895 CTTGCGCCTAGCGCTAGTCGGATAAACCAACGAATGTGTGCCCAGCACTAGTCAGATGAACTCAC
1 -TTGCGCCCAGCGCTAGTCGGATAAACCATCGAATGTGTGCCCAGCACTAGTCAGA-CAACTAAC
39844960 GAAAG
64 -AAAG
39844965 TTGCGCCCAGCGCTAGTC
1 TTGCGCCCAGCGCTAGTC
39844983 AAACAAATCG
Statistics
Matches: 122, Mismatches: 29, Indels: 22
0.71 0.17 0.13
Matches are distributed among these distances:
69 61 0.50
70 7 0.06
71 2 0.02
73 2 0.02
74 7 0.06
75 41 0.34
76 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (67 bp):
TTGCGCCCAGCGCTAGTCGGATAAACCATCGAATGTGTGCCCAGCACTAGTCAGACAACTAACAA
AG
Found at i:39844979 original size:144 final size:144
Alignment explanation
Indices: 39844717--39844983 Score: 419
Period size: 144 Copynumber: 1.9 Consensus size: 144
39844707 GATATTAGAT
* * * **
39844717 GTGAGCCCAGCTCTAGTTGGACAAACCAACGATGTTTGCGCCAAGCGCTAGTCGGATAAACCGTC
1 GTGAGCCCAGCTCTAATTGGACAAACCAACAATGCTTGCGCCAAGCGCTAGTCGGATAAACCAAC
* *
39844782 GAATGTGTGCCCAGCACTAGTCAGACAAGCTTACAAAAGTTGCGCCCATCGCTAGTCAGATATAC
66 GAATGTGTGCCCAGCACTAGTCAGACAAGCTCACAAAAGTTGCGCCCAGCGCTAGTCAGATATAC
39844847 TGACAAAATCAATA
131 TGACAAAATCAATA
* *
39844861 GTGAGCCCAGCTCTAATTGGATAAACCAACAATGCTTGCGCCTAGCGCTAGTCGGATAAACCAAC
1 GTGAGCCCAGCTCTAATTGGACAAACCAACAATGCTTGCGCCAAGCGCTAGTCGGATAAACCAAC
* *
39844926 GAATGTGTGCCCAGCACTAGTCAGATGAA-CTCACGAAAGTTGCGCCCAGCGCTAGTCA
66 GAATGTGTGCCCAGCACTAGTCAGA-CAAGCTCACAAAAGTTGCGCCCAGCGCTAGTCA
39844984 AACAAATCGA
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
144 109 0.98
145 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (144 bp):
GTGAGCCCAGCTCTAATTGGACAAACCAACAATGCTTGCGCCAAGCGCTAGTCGGATAAACCAAC
GAATGTGTGCCCAGCACTAGTCAGACAAGCTCACAAAAGTTGCGCCCAGCGCTAGTCAGATATAC
TGACAAAATCAATA
Found at i:39844981 original size:35 final size:35
Alignment explanation
Indices: 39844721--39844983 Score: 108
Period size: 35 Copynumber: 7.4 Consensus size: 35
39844711 TTAGATGTGA
* ** * *
39844721 GCCCAGCTCTAGTTGGACAAACCAACG-ATGTTTGC
1 GCCCAGCGCTAGTCAGATAAACCAACGAAAG-TTGC
* * ** * *
39844756 GCCAAGCGCTAGTCGGATAAACCGTCGAATG-TGT
1 GCCCAGCGCTAGTCAGATAAACCAACGAAAGTTGC
* * * ** *
39844790 GCCCAGCACTAGTCAGACAAGCTTACAAAAGTTGC
1 GCCCAGCGCTAGTCAGATAAACCAACGAAAGTTGC
* * *
39844825 GCCCATCGCTAGTCAGATATACTGACAAAATC-AATAG-TGA
1 GCCCAGCGCTAGTCAGATA-A---AC-CAA-CGAA-AGTTGC
* * ** *
39844865 GCCCAGCTCTAATTGGATAAACCAAC-AATGCTTGC
1 GCCCAGCGCTAGTCAGATAAACCAACGAAAG-TTGC
* * * *
39844900 GCCTAGCGCTAGTCGGATAAACCAACGAATG-TGT
1 GCCCAGCGCTAGTCAGATAAACCAACGAAAGTTGC
* *
39844934 GCCCAGCACTAGTCAGATGAACTC-ACGAAAGTTGC
1 GCCCAGCGCTAGTCAGATAAAC-CAACGAAAGTTGC
39844969 GCCCAGCGCTAGTCA
1 GCCCAGCGCTAGTCA
39844984 AACAAATCGA
Statistics
Matches: 169, Mismatches: 45, Indels: 28
0.70 0.19 0.12
Matches are distributed among these distances:
33 1 0.01
34 52 0.31
35 82 0.49
36 10 0.06
39 2 0.01
40 19 0.11
41 3 0.02
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.20
Consensus pattern (35 bp):
GCCCAGCGCTAGTCAGATAAACCAACGAAAGTTGC
Found at i:39850113 original size:12 final size:12
Alignment explanation
Indices: 39850096--39850121 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
39850086 GTAGCCCATA
39850096 TTGATATGCTAT
1 TTGATATGCTAT
39850108 TTGATATGCTAT
1 TTGATATGCTAT
39850120 TT
1 TT
39850122 TTAACAACCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (12 bp):
TTGATATGCTAT
Found at i:39852867 original size:30 final size:31
Alignment explanation
Indices: 39852833--39852899 Score: 100
Period size: 33 Copynumber: 2.1 Consensus size: 31
39852823 CTATACTCGT
*
39852833 ATATAGTTA-TTTGTTGTTGCATAGTCATTA
1 ATATAATTATTTTGTTGTTGCATAGTCATTA
39852863 ATATAATTATTTTTTGTTGTTGCATAGTCATTA
1 ATATAATTA--TTTTGTTGTTGCATAGTCATTA
39852896 ATAT
1 ATAT
39852900 GCATTTTCCA
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
30 8 0.24
33 25 0.76
ACGTcount: A:0.28, C:0.06, G:0.13, T:0.52
Consensus pattern (31 bp):
ATATAATTATTTTGTTGTTGCATAGTCATTA
Found at i:39855418 original size:14 final size:14
Alignment explanation
Indices: 39855399--39855429 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
39855389 CATAAAATTG
39855399 TAATTCAAGCTATT
1 TAATTCAAGCTATT
*
39855413 TAATTCAAGTTATT
1 TAATTCAAGCTATT
39855427 TAA
1 TAA
39855430 AGAGATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.45
Consensus pattern (14 bp):
TAATTCAAGCTATT
Found at i:39855898 original size:24 final size:25
Alignment explanation
Indices: 39855841--39855907 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 25
39855831 TGTGCTTTTC
*
39855841 CCCAATGGT-AATTTTTTGAATGTTG
1 CCCAATGGTAAATTTTTTTAATG-TG
* *
39855866 -GCAACGGTAAATTTTTTTAATG-G
1 CCCAATGGTAAATTTTTTTAATGTG
*
39855889 CCCAATGGTAAGTTTTTTT
1 CCCAATGGTAAATTTTTTT
39855908 TCCTACAAAT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
23 1 0.03
24 21 0.62
25 12 0.35
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.43
Consensus pattern (25 bp):
CCCAATGGTAAATTTTTTTAATGTG
Found at i:39858219 original size:18 final size:18
Alignment explanation
Indices: 39858198--39858232 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
39858188 AGATGAAGAC
*
39858198 GAAGTCGAAGGTAGAGAT
1 GAAGACGAAGGTAGAGAT
39858216 GAAGACGAAGGTAGAGA
1 GAAGACGAAGGTAGAGA
39858233 CGAATATGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.06, G:0.40, T:0.11
Consensus pattern (18 bp):
GAAGACGAAGGTAGAGAT
Found at i:39864267 original size:24 final size:25
Alignment explanation
Indices: 39864240--39864288 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
39864230 GGTTAATCGG
* * *
39864240 AGTTTAAGTGAGA-AAGTAAATCAA
1 AGTTTAAATAAGAGAAGAAAATCAA
39864264 AGTTTAAATAAGAGAAGAAAATCAA
1 AGTTTAAATAAGAGAAGAAAATCAA
39864289 GAACCTTGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.55, C:0.04, G:0.18, T:0.22
Consensus pattern (25 bp):
AGTTTAAATAAGAGAAGAAAATCAA
Found at i:39875750 original size:10 final size:10
Alignment explanation
Indices: 39875737--39875767 Score: 53
Period size: 10 Copynumber: 3.1 Consensus size: 10
39875727 ACTTAAGGTT
39875737 AGTTTAATTA
1 AGTTTAATTA
39875747 AGTTTAATTA
1 AGTTTAATTA
*
39875757 AGATTAATTA
1 AGTTTAATTA
39875767 A
1 A
39875768 AAGTTAAACT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (10 bp):
AGTTTAATTA
Found at i:39880108 original size:29 final size:27
Alignment explanation
Indices: 39880046--39880109 Score: 67
Period size: 29 Copynumber: 2.3 Consensus size: 27
39880036 CATGTGTCAT
39880046 TTTTATAATTACATTAATCAAAAAAAA
1 TTTTATAATTACATTAATCAAAAAAAA
* * *
39880073 TTATATAACTTACTAATTAAT-TAAAAATA
1 TTTTATAA-TTAC--ATTAATCAAAAAAAA
39880102 TTTTATAA
1 TTTTATAA
39880110 ATATAATTTT
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
27 7 0.23
28 4 0.13
29 13 0.43
30 6 0.20
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (27 bp):
TTTTATAATTACATTAATCAAAAAAAA
Found at i:39880712 original size:244 final size:249
Alignment explanation
Indices: 39880401--39880862 Score: 656
Period size: 244 Copynumber: 1.9 Consensus size: 249
39880391 ATGGTATTGT
*
39880401 AAAATATTTAAAAAACAGATATTTAAGTACGGTTAAGGGATTGACAAGTGTCTTATAGGGGTATG
1 AAAATATTTAAAAAACAGATATTTAAGCACGGTTAAGGGATTGACAAGTGTCTTATAGGGGTATG
*
39880466 ATAAACTATTGAAAAATAGATA-TTTAAAAAAGTAGAGACAAATGTCATTTTTTTAATGTTGCTT
66 ATAAACTATTG-AAAATAGATATTTTAAAAAAATAGAGACAAATGTCATTTTTTTAATGTTGCTT
* **
39880530 ATGAAATG-AAAAA-ATA-T-A-TT-GCAAATACTCACCCATATAGGGAAAATATTTGGTACACT
130 ATGAAATGAAAAAATATATTAATTTACCAAATACTCACCCATATAGAAAAAATATTTGGTACACT
* *
39880589 GTCAGTGGAATTTTTAGACTTCAAAAGTAGAGTTAATAGTCTATAAGGGTATAAC
195 ATCAGTGAAATTTTTAGACTTCAAAAGTAGAGTTAATAGTCTATAAGGGTATAAC
* * **
39880644 AAAATATTTATAAAAAGTAGATATTTAAGCAGGGTT-AGGGATTTTCCAAGTGTGC-T-TAGGGG
1 AAAATATTTA-AAAAA-CAGATATTTAAGCACGGTTAAGGGA-TTGACAAGTGT-CTTATAGGGG
*
39880706 TATGATAAACTATTGAAAATAGATATTTTAAAAAAATTGAGACAAATGTCATTTTTTTAATGTTG
62 TATGATAAACTATTGAAAATAGATATTTTAAAAAAATAGAGACAAATGTCATTTTTTTAATGTTG
*
39880771 CTTGTGAAATGAAAAAAATATATTTTCAATTTACCAAATACTCACCCATATAGAAAAAATATTTG
127 CTTATGAAATG-AAAAAATATA--TT-AATTTACCAAATACTCACCCATATAGAAAAAATATTTG
39880836 GTACACTATCAGTGAAATTTTTAGACT
188 GTACACTATCAGTGAAATTTTTAGACT
39880863 CTACAAGCAG
Statistics
Matches: 191, Mismatches: 13, Indels: 19
0.86 0.06 0.09
Matches are distributed among these distances:
243 20 0.10
244 78 0.41
245 26 0.14
246 6 0.03
247 3 0.02
250 1 0.01
252 1 0.01
253 2 0.01
254 54 0.28
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (249 bp):
AAAATATTTAAAAAACAGATATTTAAGCACGGTTAAGGGATTGACAAGTGTCTTATAGGGGTATG
ATAAACTATTGAAAATAGATATTTTAAAAAAATAGAGACAAATGTCATTTTTTTAATGTTGCTTA
TGAAATGAAAAAATATATTAATTTACCAAATACTCACCCATATAGAAAAAATATTTGGTACACTA
TCAGTGAAATTTTTAGACTTCAAAAGTAGAGTTAATAGTCTATAAGGGTATAAC
Found at i:39882697 original size:16 final size:16
Alignment explanation
Indices: 39882676--39882706 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
39882666 AATACTTGAC
39882676 TAAGGACCTTTTAAGT
1 TAAGGACCTTTTAAGT
39882692 TAAGGACCTTTTAAG
1 TAAGGACCTTTTAAG
39882707 AATAATCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.13, G:0.19, T:0.35
Consensus pattern (16 bp):
TAAGGACCTTTTAAGT
Found at i:39887859 original size:16 final size:16
Alignment explanation
Indices: 39887838--39887868 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
39887828 TCGGGCTATA
39887838 ACTATGCATGTCAAAC
1 ACTATGCATGTCAAAC
39887854 ACTATGCATGTCAAA
1 ACTATGCATGTCAAA
39887869 AATAGCATAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (16 bp):
ACTATGCATGTCAAAC
Found at i:39890146 original size:82 final size:82
Alignment explanation
Indices: 39890023--39890253 Score: 293
Period size: 90 Copynumber: 2.7 Consensus size: 82
39890013 AAAAAAGATG
* * * *
39890023 CCCTAAAATAA-AAAAATTGTAGTTTAATCTCTTTAAAAATAATAAAATTATAAATTAATCTATA
1 CCCT-AAATAAGAAAAATTATA-TTTAATTTCTTCAATAATAATAAAATTATAAATTAATCTATA
39890087 GTAAAATTATACTTTGATC
64 GTAAAATTATACTTTGATC
*
39890106 CCCTAAATAAGAAAAATTATATTTAATTTCTTCAATAATAATGGAATTTTAAATTAATACATTAA
1 CCCTAAATAAGAAAAATTATATTTAATTTCTTCAATAATAAT---A----AAATT-ATAAATTAA
39890171 TCTATAGTAAAATTATACTTTGATC
58 TCTATAGTAAAATTATACTTTGATC
** *
39890196 CCCTAAATAAGAAAAATTATATTTAATTTCTTCAATAATAATGGAATTTTAAATTAAT
1 CCCTAAATAAGAAAAATTATATTTAATTTCTTCAATAATAATAAAATTATAAATTAAT
39890254 ACATGATAAA
Statistics
Matches: 130, Mismatches: 9, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
82 32 0.25
83 17 0.13
85 1 0.01
89 5 0.04
90 75 0.58
ACGTcount: A:0.46, C:0.10, G:0.05, T:0.39
Consensus pattern (82 bp):
CCCTAAATAAGAAAAATTATATTTAATTTCTTCAATAATAATAAAATTATAAATTAATCTATAGT
AAAATTATACTTTGATC
Found at i:39890177 original size:90 final size:90
Alignment explanation
Indices: 39890067--39890257 Score: 366
Period size: 90 Copynumber: 2.1 Consensus size: 90
39890057 AAAAATAATA
*
39890067 AAATT-ATAAATTAATCTATAGTAAAATTATACTTTGATCCCCTAAATAAGAAAAATTATATTTA
1 AAATTAATACATTAATCTATAGTAAAATTATACTTTGATCCCCTAAATAAGAAAAATTATATTTA
39890131 ATTTCTTCAATAATAATGGAATTTT
66 ATTTCTTCAATAATAATGGAATTTT
39890156 AAATTAATACATTAATCTATAGTAAAATTATACTTTGATCCCCTAAATAAGAAAAATTATATTTA
1 AAATTAATACATTAATCTATAGTAAAATTATACTTTGATCCCCTAAATAAGAAAAATTATATTTA
39890221 ATTTCTTCAATAATAATGGAATTTT
66 ATTTCTTCAATAATAATGGAATTTT
39890246 AAATTAATACAT
1 AAATTAATACAT
39890258 GATAAAATTA
Statistics
Matches: 100, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
89 5 0.05
90 95 0.95
ACGTcount: A:0.46, C:0.09, G:0.05, T:0.40
Consensus pattern (90 bp):
AAATTAATACATTAATCTATAGTAAAATTATACTTTGATCCCCTAAATAAGAAAAATTATATTTA
ATTTCTTCAATAATAATGGAATTTT
Found at i:39895205 original size:17 final size:17
Alignment explanation
Indices: 39895145--39895208 Score: 51
Period size: 17 Copynumber: 3.9 Consensus size: 17
39895135 ATAATAAAAA
*
39895145 CAAATAGAGGCCGAAAC
1 CAAATAGAGGCCCAAAC
* *
39895162 C-TAT-GTGGCCCAAAC
1 CAAATAGAGGCCCAAAC
* **
39895177 CCAACCGAGGCCCAAAC
1 CAAATAGAGGCCCAAAC
*
39895194 CAAATAGTGGCCCAA
1 CAAATAGAGGCCCAA
39895209 GACTGATTTA
Statistics
Matches: 35, Mismatches: 10, Indels: 4
0.71 0.20 0.08
Matches are distributed among these distances:
15 10 0.29
16 3 0.09
17 22 0.63
ACGTcount: A:0.38, C:0.33, G:0.20, T:0.09
Consensus pattern (17 bp):
CAAATAGAGGCCCAAAC
Found at i:39896377 original size:33 final size:34
Alignment explanation
Indices: 39896319--39896386 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
39896309 TTACAATTCA
* *
39896319 AATTAGTTTTTTTTCATTGTCTTTATTTTTTATT
1 AATTAGTTTTTTTTCATTGTCTTTATATTTAATT
*
39896353 AATTAGTTTTTTATTC-TT-TTTTTATATTTAATT
1 AATTAGTTTTTT-TTCATTGTCTTTATATTTAATT
39896386 A
1 A
39896387 TTTTTTTAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
33 13 0.43
34 14 0.47
35 3 0.10
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.69
Consensus pattern (34 bp):
AATTAGTTTTTTTTCATTGTCTTTATATTTAATT
Found at i:39896383 original size:29 final size:29
Alignment explanation
Indices: 39896338--39896394 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
39896328 TTTTTCATTG
*
39896338 TCTTTATTTTTTATTAATTAGTTTTTTAT
1 TCTTTATTTTATATTAATTAGTTTTTTAT
*
39896367 TCTTT-TTTTATATTTAATTATTTTTTTA
1 TCTTTATTTTATA-TTAATTAGTTTTTTA
39896395 AAAAAATATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.21, C:0.04, G:0.02, T:0.74
Consensus pattern (29 bp):
TCTTTATTTTATATTAATTAGTTTTTTAT
Found at i:39897192 original size:98 final size:98
Alignment explanation
Indices: 39897081--39897277 Score: 349
Period size: 98 Copynumber: 2.0 Consensus size: 98
39897071 TTAAAAATAA
* * *
39897081 TAAAGGAAATATTCCGAGTTTGGGATTTTAGAGGAATCGTGCCCTAACGTATTGGGTGTTATTTC
1 TAAAGGAAATATTCCGAGTTTGAGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
39897146 TTAAATCTTGGACAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGACAAGTGGATGTTCTTTTAAAG
*
39897179 TAAAGGAAGTATTCCGAGTTTGAGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGAGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
*
39897244 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGACAAGTGGATGTTCTTTTAAAG
39897277 T
1 T
39897278 TTTATCGCAC
Statistics
Matches: 94, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 94 1.00
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGAGATTTTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGACAAGTGGATGTTCTTTTAAAG
Found at i:39908888 original size:88 final size:88
Alignment explanation
Indices: 39908783--39908962 Score: 315
Period size: 88 Copynumber: 2.0 Consensus size: 88
39908773 ATAGATCTTA
39908783 TCTCCCTAAGCAATAGTGGAGCAGATCAAAGACGGCGAATCTTAACTTTCCAAGATAGCGGGAAG
1 TCTCCCTAAGCAATAGTGGAGCAGATCAAAGACGGCGAATCTTAACTTTCCAAGATAGCGGGAAG
*
39908848 CAGATTTAAGCCACCAAGCCTTG
66 CAGATTTAAGCCACCAAACCTTG
* * * *
39908871 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAATAGTGGAGCAGATCAAAGACGGCGAATCTTAACTTTCCAAGATAGCGGGAAG
39908936 CAGATTTAAGCCACCAAACCTTG
66 CAGATTTAAGCCACCAAACCTTG
39908959 TCTC
1 TCTC
39908963 TCTGAGTAGC
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.31, C:0.24, G:0.23, T:0.22
Consensus pattern (88 bp):
TCTCCCTAAGCAATAGTGGAGCAGATCAAAGACGGCGAATCTTAACTTTCCAAGATAGCGGGAAG
CAGATTTAAGCCACCAAACCTTG
Found at i:39908902 original size:132 final size:132
Alignment explanation
Indices: 39908665--39908902 Score: 368
Period size: 132 Copynumber: 1.8 Consensus size: 132
39908655 CTGATGTTAC
* * * *
39908665 AGTGGAGCATATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCAAAGACGGCGAATCTTAACTTTCCAAGATAGCGGGAAGCAGATTTAAGCCAC
* * * * *
39908730 CAAGCCTTGTCTCCTTGAGTAGCAGCGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGATCGAAGATTATAGATCTTATCTCCCTAAGCA
39908795 AT
131 AT
39908797 AGTGGAGCAGATCAAAGACGGCGAATCTTAACTTTCCAAGATAGCGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCAAAGACGGCGAATCTTAACTTTCCAAGATAGCGGGAAGCAGATTTAAGCCAC
* * *
39908862 CAAGCCTTGTCTCCCTAAGCAGTAGTGGAGCAGATCGAAGA
66 CAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGATCGAAGA
39908903 CGGCGAATCT
Statistics
Matches: 94, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
132 94 1.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.23
Consensus pattern (132 bp):
AGTGGAGCAGATCAAAGACGGCGAATCTTAACTTTCCAAGATAGCGGGAAGCAGATTTAAGCCAC
CAAGCCTTGTCTCCCTAAGCAGCAGCGGAGAAGATCGAAGATTATAGATCTTATCTCCCTAAGCA
AT
Found at i:39908938 original size:44 final size:42
Alignment explanation
Indices: 39908795--39908940 Score: 107
Period size: 44 Copynumber: 3.3 Consensus size: 42
39908785 TCCCTAAGCA
*
39908795 ATAGTGGAGCAGATCAAAGACGGCGAATCTTAACTTTCCAAG
1 ATAGTGGAGCAGATCAAAGACGGCGAATCTTATCTTTCCAAG
* ** ** * * * *
39908837 ATAGCGGGAAGCAGATTTAAG-CCACCAAGCCTTGTC-TCCCTAAG
1 ATAG-TGG-AGCAGATCAAAGACGGCGAA-TCTTATCTTTCC-AAG
*
39908881 CAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAG
1 -A-TAGTGGAGCAGATCAAAGACGGCGAATCTTATCTTTCCAAG
39908925 ATAGTGGGAAGCAGAT
1 ATAGT-GG-AGCAGAT
39908941 TTAAGCCACC
Statistics
Matches: 75, Mismatches: 19, Indels: 18
0.67 0.17 0.16
Matches are distributed among these distances:
42 8 0.11
43 12 0.16
44 42 0.56
45 10 0.13
46 3 0.04
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.21
Consensus pattern (42 bp):
ATAGTGGAGCAGATCAAAGACGGCGAATCTTATCTTTCCAAG
Found at i:39909083 original size:213 final size:216
Alignment explanation
Indices: 39908665--39909096 Score: 719
Period size: 213 Copynumber: 2.0 Consensus size: 216
39908655 CTGATGTTAC
*
39908665 AGTGGAGCATATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
*
39908730 CAAGCCTTGTCTCCTTGAGTAGCAGCGGAGAAGGTTGAAGATTATAGATCTTATCTCCCTAAGCA
66 CAAACCTTGTCTCCTTGAGTAGCAGCGGAGAA----GAAGATTATAGATCTTATCTCCCTAAGCA
*
39908795 ATAGTGGAGCAGATCAAAGACGGCGAATCTTAACTTTCCAAGATAGCGGGAAGCAGATTTAAGCC
127 ATAGTGGAGCAGATCAAAGACGACGAATCTTAACTTTCCAAGATAGCGGGAAGCAGATTTAAGCC
39908860 ACCAAGCCTTGTCTCCCTAAGCAGT
192 ACCAAGCCTTGTCTCCCTAAGCAGT
39908885 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
1 AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
* *
39908950 CAAACCTTGTCT-CTCTGAGTAGCAGC-G-GAA-AAGGTTATAGATCTTATCTCCCTAAGCAGTA
66 CAAACCTTGTCTCCT-TGAGTAGCAGCGGAGAAGAAGATTATAGATCTTATCTCCCTAAGCAATA
* *
39909011 GTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGCGGGAAGCAGATTTAAGCCACC
130 GTGGAGCAGATCAAAGACGACGAATCTTAACTTTCCAAGATAGCGGGAAGCAGATTTAAGCCACC
*
39909076 AAGCCTTGTCTCCCTGAGCAG
195 AAGCCTTGTCTCCCTAAGCAG
39909097 CAGCGGAGAA
Statistics
Matches: 203, Mismatches: 8, Indels: 9
0.92 0.04 0.04
Matches are distributed among these distances:
213 111 0.55
218 3 0.01
219 3 0.01
220 86 0.42
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.23
Consensus pattern (216 bp):
AGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAGCAGATTTAAGCCAC
CAAACCTTGTCTCCTTGAGTAGCAGCGGAGAAGAAGATTATAGATCTTATCTCCCTAAGCAATAG
TGGAGCAGATCAAAGACGACGAATCTTAACTTTCCAAGATAGCGGGAAGCAGATTTAAGCCACCA
AGCCTTGTCTCCCTAAGCAGT
Found at i:39910731 original size:132 final size:132
Alignment explanation
Indices: 39908871--39910692 Score: 2924
Period size: 132 Copynumber: 13.9 Consensus size: 132
39908861 CCAAGCCTTG
39908871 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
* * * *
39908936 CAGATTTAAGCCACCAAACCTTGTCTCTCTGAGTAGCAGC-G-GAA--AAG--G-TTATAGATCT
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
39908994 TA
131 TA
* *
39908996 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGACGAATCTTATCTTTCCAAGATAGCGGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
* *
39909061 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTA-AAGATGGTAGATC
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGG-AAGAAGATTGTAGATC
39909125 TTA
130 TTA
* * *
39909128 TCTCCCTAAACAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAATAGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
**
39909193 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
39909258 TA
131 TA
* *
39909260 TCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
* ** * *
39909325 CAGATTTAGGCCACCAAGCCTTGTCTCATTGAACAGCAGTGGAGAAGGAAGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
39909390 TA
131 TA
* * *
39909392 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCTTATCTTTCTAAGATAGTAGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
*
39909457 CAGATTTAGGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
39909522 TA
131 TA
* *
39909524 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCTAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
*
39909589 CAGATTTAGGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
39909654 TA
131 TA
* * * *
39909656 TCTCCCTAAGCAGTAGGGGAGCAAATCGAAGACGACGAATCTTATCTTTTCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
* * **
39909721 TAGATTTAAGCCACCAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGTTGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
39909786 TA
131 TA
*
39909788 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCTTATCTTTCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
*
39909853 CAGATTTAGGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
39909918 TA
131 TA
*
39909920 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGATGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
* * * *
39909985 TAGATTTAGGCCACCAAGCCTTGTCTCCCTGAGTAGCAGCAGAGAAGGAAGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
39910050 TA
131 TA
* *
39910052 TCTCCCTAAGCAGTAGGGGAGCAAATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
* * **
39910117 TAGATTTAAGCCACCAAGCCTTGTCTCTCTGAGCAGCAGCGGAGAAGGCTGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
39910182 TA
131 TA
* *
39910184 TCTCCCTAAGCAGTAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGAGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
* *
39910249 CAGATTTAGGTCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
39910314 TA
131 TA
* *
39910316 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAATCTTATATTTCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
* ** *
39910381 CAGATTTAGGCCACCAAGCCTTGTCTCCCTGAGCAGCAGTAGAGAAGGAAGAAAATTGTAGATCT
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
39910446 TA
131 TA
* *
39910448 TCTCCCTAAGCAGTAGGGGAGCAGATCGAAGAAGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
* **
39910513 TAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGC-GAGGAAGGTTGAAGATTGTAGATC
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGA-GAAGGAAGAAGATTGTAGATC
39910577 TTA
130 TTA
* * * * *
39910580 TCTCTCTAAGTAGTAGTGGAACAGATCGAAGACGGTGAATCTTATCTTTCTAAGATAGTGGGAAG
1 TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
* * *
39910645 CAGATTAAAGCCACCAAGCCTTGTCTCCTTGAGCAGCAACGGAGAAGG
66 CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGG
39910693 TTGAAGCTAC
Statistics
Matches: 1575, Mismatches: 111, Indels: 15
0.93 0.07 0.01
Matches are distributed among these distances:
125 100 0.06
126 1 0.00
127 3 0.00
130 1 0.00
131 4 0.00
132 1464 0.93
133 2 0.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (132 bp):
TCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTTCCAAGATAGTGGGAAG
CAGATTTAAGCCACCAAGCCTTGTCTCCCTGAGCAGCAGCGGAGAAGGAAGAAGATTGTAGATCT
TA
Found at i:39912427 original size:17 final size:18
Alignment explanation
Indices: 39912388--39912429 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
39912378 TGACATGGAT
* *
39912388 TATTATTTTTTTATTTCG
1 TATTATTTATTTATTTCA
39912406 T-TTATTTATTTATTT-A
1 TATTATTTATTTATTTCA
39912422 TATTATTT
1 TATTATTT
39912430 TTATGCCATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 1 0.05
17 19 0.90
18 1 0.05
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (18 bp):
TATTATTTATTTATTTCA
Found at i:39912860 original size:98 final size:98
Alignment explanation
Indices: 39912749--39912945 Score: 331
Period size: 98 Copynumber: 2.0 Consensus size: 98
39912739 TTAAAAATAA
* * *
39912749 TAAAGGAAATATTCCGAGTTTGGGATTTTAGAGGAATCGTGCCCTAACGTATTGGGTGCAATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAAGAATCGTGCCCTAACATATTGGGTGCAATTTC
39912814 TTAAATCTTGGACAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGACAAGTGGATGTTCTTTTAAAG
* **
39912847 TAAAGGAAGTATTCCGAGTTTGGGATTTTAAAAGAATCGTGCCCTAACATATTGGGTGTGATTTC
1 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAAGAATCGTGCCCTAACATATTGGGTGCAATTTC
*
39912912 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGACAAGTGGATGTTCTTTTAAAG
39912945 T
1 T
39912946 TTTATCGCAC
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.29, C:0.11, G:0.24, T:0.36
Consensus pattern (98 bp):
TAAAGGAAATATTCCGAGTTTGGGATTTTAAAAGAATCGTGCCCTAACATATTGGGTGCAATTTC
TTAAATCTTGGACAAGTGGATGTTCTTTTAAAG
Found at i:39914288 original size:22 final size:22
Alignment explanation
Indices: 39914261--39914311 Score: 102
Period size: 22 Copynumber: 2.3 Consensus size: 22
39914251 CTCTCTAATC
39914261 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
39914283 CTCTCAATTTCCTTCCAAAATT
1 CTCTCAATTTCCTTCCAAAATT
39914305 CTCTCAA
1 CTCTCAA
39914312 ACTCATATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.27, C:0.33, G:0.00, T:0.39
Consensus pattern (22 bp):
CTCTCAATTTCCTTCCAAAATT
Found at i:39914393 original size:29 final size:32
Alignment explanation
Indices: 39914357--39914419 Score: 96
Period size: 32 Copynumber: 2.1 Consensus size: 32
39914347 CTCAAATCCA
39914357 TTTTTAAAATAA-TTAT-AA-TTTTTTATATT
1 TTTTTAAAATAATTTATAAATTTTTTTATATT
*
39914386 TTTTTAAAATAATTTTTAAATTTTTTTATATT
1 TTTTTAAAATAATTTATAAATTTTTTTATATT
39914418 TT
1 TT
39914420 CATCAATGGC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
29 12 0.40
30 3 0.10
31 2 0.07
32 13 0.43
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (32 bp):
TTTTTAAAATAATTTATAAATTTTTTTATATT
Found at i:39914408 original size:22 final size:23
Alignment explanation
Indices: 39914371--39914413 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
39914361 TAAAATAATT
*
39914371 ATAATTTTTTATATTTTTTTAAA
1 ATAATTTTTTAAATTTTTTTAAA
39914394 ATAA-TTTTTAAATTTTTTTA
1 ATAATTTTTTAAATTTTTTTA
39914414 TATTTTCATC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 15 0.79
23 4 0.21
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (23 bp):
ATAATTTTTTAAATTTTTTTAAA
Found at i:39915511 original size:7 final size:7
Alignment explanation
Indices: 39915499--39915523 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
39915489 AGTCGATTGA
39915499 TATTTAG
1 TATTTAG
39915506 TATTTAG
1 TATTTAG
39915513 TATTTAG
1 TATTTAG
39915520 TATT
1 TATT
39915524 ATGTATATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (7 bp):
TATTTAG
Found at i:39916196 original size:18 final size:18
Alignment explanation
Indices: 39916175--39916209 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
39916165 AGGTATGTTT
* *
39916175 CCTAGCCCTTATATGTAC
1 CCTAACCCTTACATGTAC
39916193 CCTAACCCTTACATGTA
1 CCTAACCCTTACATGTA
39916210 TCCTTTTCCG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.26, C:0.34, G:0.09, T:0.31
Consensus pattern (18 bp):
CCTAACCCTTACATGTAC
Found at i:39916792 original size:28 final size:28
Alignment explanation
Indices: 39916760--39917739 Score: 1352
Period size: 28 Copynumber: 34.4 Consensus size: 28
39916750 TAACCTAACC
39916760 CTAACCTAAATTAATTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
39916788 CTAACCTAAATTAACTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
39916816 CTAACCTAAATTAAATT-AAAACCCTAACC
1 CTAACCTAAATT-AATTAAAAACCCTAA-T
*
39916845 CTAACCTAAATTAATT-AAAACCCTAACC
1 CTAACCTAAATTAATTAAAAACCCTAA-T
*
39916873 CTAACCTAAATTAATTAAAAAACCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
* * *
39916901 CTAACTTAAATTAACTAAAAACCCTAAAC
1 CTAACCTAAATTAATTAAAAACCCT-AAT
* *
39916930 CTAACATAAATTAACTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
* * *
39916958 CTAACCTAAATTAATTTAAAACCTTAACC
1 CTAACCTAAATTAATTAAAAACCCTAA-T
39916987 CTAACCTAAATTAATTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
39917015 CTAACCTAAATTAACTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
39917043 CTAACCTAAATTAACTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
39917071 CTAACCTAAATTAATTTAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
* * * *
39917099 CTAACCTAAATTAATTTACAACCATAAAC
1 CTAACCTAAATTAATTAAAAACCCT-AAT
*
39917128 CTAACCTAAATTAACTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
* *
39917156 CTAACCTAAATTAATTTAAAACCCTAACC
1 CTAACCTAAATTAATTAAAAACCCTAA-T
39917185 CTAACCTAAATTAATTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
39917213 CTAACCTAAATTAATTTAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
* * * *
39917241 CTAACCTAAATTAATTTACAACCATAAAC
1 CTAACCTAAATTAATTAAAAACCCT-AAT
*
39917270 CTAACCTAAATTAACTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
39917298 CTAACCTAAATTAATTTAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
* *
39917326 CTAACCTAAATTAATTTAAAACCCTAACC
1 CTAACCTAAATTAATTAAAAACCCTAA-T
*
39917355 CTAACCTAAATTAATTAAAAAACCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
39917383 CTAACCTAAATTAACTAAAAACCCTAACCT
1 CTAACCTAAATTAATTAAAAACCCTAA--T
39917413 AACCCTAACCTAAATTAATTAAAAACCCTAAT
1 ----CTAACCTAAATTAATTAAAAACCCTAAT
*
39917445 CTAACCTAAATTAACTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
* * *
39917473 CTAACTTAAATTAATTTAAAACCCTAACC
1 CTAACCTAAATTAATTAAAAACCCTAA-T
*
39917502 CTAACCTAAATTAATTAAAAAACCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
* *
39917530 CTAACCTAAATTAATTTAAAACCCTAACC
1 CTAACCTAAATTAATTAAAAACCCTAA-T
*
39917559 CTAACCTAAATTAATTAAAAAACCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
39917587 CTAACCTAAATTAATTAAAAACTCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
39917615 CTAACCTAAATTAACTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
*
39917643 CTAACCTAAATTAATTTAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAAT
* *
39917671 CTAACCTAAATTAATTAAAAACTCTAAAC
1 CTAACCTAAATTAATTAAAAACCCT-AAT
* *
39917700 CTAACCTAAATTAATTAAAAACCCAAAA
1 CTAACCTAAATTAATTAAAAACCCTAAT
39917728 CTAACCTAAATT
1 CTAACCTAAATT
39917740 TTTTTGGCTT
Statistics
Matches: 854, Mismatches: 80, Indels: 36
0.88 0.08 0.04
Matches are distributed among these distances:
28 580 0.68
29 246 0.29
30 1 0.00
32 1 0.00
34 26 0.03
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.27
Consensus pattern (28 bp):
CTAACCTAAATTAATTAAAAACCCTAAT
Found at i:39916834 original size:57 final size:56
Alignment explanation
Indices: 39916760--39917739 Score: 1352
Period size: 57 Copynumber: 17.2 Consensus size: 56
39916750 TAACCTAACC
*
39916760 CTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAACTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAAT
* *
39916816 CTAACCTAAATTAAATT-AAAACCCTAACCCTAACCTAAATTAATT-AAAACCCTAACC
1 CTAACCTAAATT-AATTAAAAACCCTAA-TCTAACCTAAATTAATTAAAAACCCTAA-T
* * * *
39916873 CTAACCTAAATTAATTAAAAAACCTAATCTAACTTAAATTAACTAAAAACCCTAAAC
1 CTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCT-AAT
* * * * *
39916930 CTAACATAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTTAAAACCTTAACC
1 CTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAA-T
*
39916987 CTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAACTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAAT
* *
39917043 CTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTTAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAAT
* * * * *
39917099 CTAACCTAAATTAATTTACAACCATAAACCTAACCTAAATTAACTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCT-AATCTAACCTAAATTAATTAAAAACCCTAAT
* *
39917156 CTAACCTAAATTAATTTAAAACCCTAACCCTAACCTAAATTAATTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAA-TCTAACCTAAATTAATTAAAAACCCTAAT
* * * * *
39917213 CTAACCTAAATTAATTTAAAACCCTAATCTAACCTAAATTAATTTACAACCATAAAC
1 CTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCT-AAT
* *
39917270 CTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTTAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAAT
* * *
39917326 CTAACCTAAATTAATTTAAAACCCTAACCCTAACCTAAATTAATTAAAAAACCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAA-TCTAACCTAAATTAATTAAAAACCCTAAT
*
39917383 CTAACCTAAATTAACTAAAAACCCTAACCTAACCCTAACCTAAATTAATTAAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAA--T----CTAACCTAAATTAATTAAAAACCCTAAT
* * * *
39917445 CTAACCTAAATTAACTAAAAACCCTAATCTAACTTAAATTAATTTAAAACCCTAACC
1 CTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAA-T
* * *
39917502 CTAACCTAAATTAATTAAAAAACCTAATCTAACCTAAATTAATTTAAAACCCTAACC
1 CTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAA-T
* *
39917559 CTAACCTAAATTAATTAAAAAACCTAATCTAACCTAAATTAATTAAAAACTCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAAT
* *
39917615 CTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTTAAAACCCTAAT
1 CTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAAT
* * * *
39917671 CTAACCTAAATTAATTAAAAACTCTAAACCTAACCTAAATTAATTAAAAACCCAAAA
1 CTAACCTAAATTAATTAAAAACCCT-AATCTAACCTAAATTAATTAAAAACCCTAAT
39917728 CTAACCTAAATT
1 CTAACCTAAATT
39917740 TTTTTGGCTT
Statistics
Matches: 835, Mismatches: 71, Indels: 35
0.89 0.08 0.04
Matches are distributed among these distances:
56 277 0.33
57 500 0.60
58 3 0.00
60 1 0.00
62 54 0.06
ACGTcount: A:0.49, C:0.23, G:0.00, T:0.27
Consensus pattern (56 bp):
CTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAAT
Found at i:39916846 original size:85 final size:84
Alignment explanation
Indices: 39916753--39917739 Score: 1293
Period size: 85 Copynumber: 11.5 Consensus size: 84
39916743 AAAATCCTAA
*
39916753 CCTAACCCTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAACTAAAAACCCTAATCT
1 CCTAA-CCTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAATCT
39916818 AACCTAAATTAAATTAAAAC
65 AACCTAAATTAAATTAAAAC
* *
39916838 CCTAACCCTAACCTAAATTAATT-AAAACCCTAACCCTAACCTAAATTAATTAAAAAACCTAATC
1 CCTAA-CCTAACCTAAATTAATTAAAAACCCTAA-TCTAACCTAAATTAATTAAAAACCCTAATC
* * *
39916902 TAACTTAAATTAACTAAAAAC
64 TAACCTAAATTAAATTAAAAC
* * * * *
39916923 CCTAAACCTAACATAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTTAAAACCTTAACCC
1 CCT-AACCTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAA-TC
39916988 TAACCTAAATT-AATTAAAAAC
64 TAACCTAAATTAAATT-AAAAC
* * *
39917009 CCTAATCTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAACTAAAAACCCTAATCTA
1 CCTAACCTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAATCTA
*
39917074 ACCTAAATTAATTTAAAAC
66 ACCTAAATTAAATTAAAAC
* * * * * *
39917093 CCTAATCTAACCTAAATTAATTTACAACCATAAACCTAACCTAAATTAACTAAAAACCCTAATCT
1 CCTAACCTAACCTAAATTAATTAAAAACCCT-AATCTAACCTAAATTAATTAAAAACCCTAATCT
*
39917158 AACCTAAATTAATTTAAAAC
65 AACCTAAATTAAATTAAAAC
*
39917178 CCTAACCCTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTTAAAACCCTAATCT
1 CCTAA-CCTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAATCT
* *
39917243 AACCTAAATTAATTTACAAC
65 AACCTAAATTAAATTAAAAC
* * *
39917263 CATAAACCTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTTAAAACCCTAATCT
1 CCT-AACCTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAATCT
*
39917328 AACCTAAATTAATTTAAAAC
65 AACCTAAATTAAATTAAAAC
* *
39917348 CCTAACCCTAACCTAAATTAATTAAAAAACCTAATCTAACCTAAATTAACTAAAAACCCTAACCT
1 CCTAA-CCTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAA--T
39917413 AACCCTAACCTAAATT-AATTAAAAAC
63 ----CTAACCTAAATTAAATT-AAAAC
* * * * *
39917439 CCTAATCTAACCTAAATTAACTAAAAACCCTAATCTAACTTAAATTAATTTAAAACCCTAACCCT
1 CCTAACCTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAA-TCT
*
39917504 AACCTAAATT-AATTAAAAAA
65 AACCTAAATTAAATT-AAAAC
* * * *
39917524 CCTAATCTAACCTAAATTAATTTAAAACCCTAACCCTAACCTAAATTAATTAAAAAACCTAATCT
1 CCTAACCTAACCTAAATTAATTAAAAACCCTAA-TCTAACCTAAATTAATTAAAAACCCTAATCT
39917589 AACCTAAATT-AATTAAAAAC
65 AACCTAAATTAAATT-AAAAC
* * * *
39917609 TCTAATCTAACCTAAATTAACTAAAAACCCTAATCTAACCTAAATTAATTTAAAACCCTAATCTA
1 CCTAACCTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAATCTA
39917674 ACCTAAATT-AATTAAAAAC
66 ACCTAAATTAAATT-AAAAC
* * *
39917693 TCTAAACCTAACCTAAATTAATTAAAAACCCAAAACTAACCTAAATT
1 CCT-AACCTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATT
39917740 TTTTTGGCTT
Statistics
Matches: 812, Mismatches: 71, Indels: 38
0.88 0.08 0.04
Matches are distributed among these distances:
84 107 0.13
85 549 0.68
86 79 0.10
87 1 0.00
89 1 0.00
90 53 0.07
91 22 0.03
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (84 bp):
CCTAACCTAACCTAAATTAATTAAAAACCCTAATCTAACCTAAATTAATTAAAAACCCTAATCTA
ACCTAAATTAAATTAAAAC
Found at i:39917772 original size:25 final size:25
Alignment explanation
Indices: 39917739--39917792 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
39917729 TAACCTAAAT
39917739 TTTTTTGGCTTAATAATTTTACATA
1 TTTTTTGGCTTAATAATTTTACATA
39917764 TTTTTTGGCTTAATAATTTTACATA
1 TTTTTTGGCTTAATAATTTTACATA
39917789 TTTT
1 TTTT
39917793 GAACACTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.26, C:0.07, G:0.07, T:0.59
Consensus pattern (25 bp):
TTTTTTGGCTTAATAATTTTACATA
Found at i:39917902 original size:10 final size:10
Alignment explanation
Indices: 39917887--39917911 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
39917877 TTTTGGCTTA
39917887 ATAATTTTAC
1 ATAATTTTAC
39917897 ATAATTTTAC
1 ATAATTTTAC
39917907 ATAAT
1 ATAAT
39917912 GTTAGATCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.48
Consensus pattern (10 bp):
ATAATTTTAC
Found at i:39921250 original size:124 final size:126
Alignment explanation
Indices: 39921020--39921358 Score: 619
Period size: 127 Copynumber: 2.7 Consensus size: 126
39921010 CCCAAACTTG
39921020 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTCG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTCG
*
39921085 TAGAAACGATTTTATACTATTTGCTCAGAAACATT-AAAAAAAA-TTATTTCTTACATGAC
66 TAGAAACGATTTTATACTATTTGCTCAGAAAAATTAAAAAAAAATTTATTTCTTACATGAC
*
39921144 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCAAATAGCATCCTCG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTCG
39921209 TAGAAACGATTTTATACTATTTGCTCAGAAAAATTAGAAAAAAAATTTATTTCTTACATGAC
66 TAGAAACGATTTTATACTATTTGCTCAGAAAAATTA-AAAAAAAATTTATTTCTTACATGAC
*
39921271 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTGG
1 CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTCG
*
39921336 TAGAAGCGATTTTATACTATTTG
66 TAGAAACGATTTTATACTATTTG
39921359 ACCAAAAACG
Statistics
Matches: 207, Mismatches: 5, Indels: 3
0.96 0.02 0.01
Matches are distributed among these distances:
124 98 0.47
126 8 0.04
127 101 0.49
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (126 bp):
CTACTGTAGCAAAATCGCGTCCACGAGGGCGCGATTTCACAATTTCTTCTCAAATAGCATCCTCG
TAGAAACGATTTTATACTATTTGCTCAGAAAAATTAAAAAAAAATTTATTTCTTACATGAC
Found at i:39922324 original size:10 final size:9
Alignment explanation
Indices: 39922304--39922336 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
39922294 AAAATTGAAG
*
39922304 TTTTTCATT
1 TTTTTTATT
39922313 TTTTTTATT
1 TTTTTTATT
39922322 TTTTTTATT
1 TTTTTTATT
39922331 TTTTTT
1 TTTTTT
39922337 GCTTATAGAT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.09, C:0.03, G:0.00, T:0.88
Consensus pattern (9 bp):
TTTTTTATT
Found at i:39926845 original size:13 final size:13
Alignment explanation
Indices: 39926823--39926858 Score: 54
Period size: 13 Copynumber: 2.8 Consensus size: 13
39926813 CAACCCAGCG
*
39926823 CAAACTCAATTAC
1 CAAACCCAATTAC
39926836 CAAACCCAATTAC
1 CAAACCCAATTAC
*
39926849 CCAACCCAAT
1 CAAACCCAAT
39926859 AAAACTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.44, C:0.39, G:0.00, T:0.17
Consensus pattern (13 bp):
CAAACCCAATTAC
Found at i:39927018 original size:9 final size:9
Alignment explanation
Indices: 39927006--39927058 Score: 54
Period size: 9 Copynumber: 5.8 Consensus size: 9
39926996 AAAAAATTTA
39927006 GGTAATTCG
1 GGTAATTCG
*
39927015 GGTATTTTTC-
1 GGTA--ATTCG
39927025 GGTAATTCG
1 GGTAATTCG
* *
39927034 GTTAATTCA
1 GGTAATTCG
39927043 GGTAATTCG
1 GGTAATTCG
39927052 GGTAATT
1 GGTAATT
39927059 TTTAACCAAA
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
8 3 0.09
9 25 0.71
10 4 0.11
11 3 0.09
ACGTcount: A:0.23, C:0.09, G:0.26, T:0.42
Consensus pattern (9 bp):
GGTAATTCG
Found at i:39930932 original size:23 final size:23
Alignment explanation
Indices: 39930906--39930973 Score: 59
Period size: 23 Copynumber: 2.9 Consensus size: 23
39930896 ATATGTGTAT
39930906 TTTATAAAGTTATAACCAAAAAA
1 TTTATAAAGTTATAACCAAAAAA
* *
39930929 TTTATATTATTTA-AATCCTAAAAAA
1 TTTATA-AAGTTATAA-CC-AAAAAA
* *
39930954 TTT-TAAAGTTTTGACCAAAA
1 TTTATAAAGTTATAACCAAAA
39930974 TGTTTATTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 9
0.70 0.12 0.18
Matches are distributed among these distances:
22 4 0.11
23 13 0.37
24 9 0.26
25 9 0.26
ACGTcount: A:0.49, C:0.09, G:0.04, T:0.38
Consensus pattern (23 bp):
TTTATAAAGTTATAACCAAAAAA
Found at i:39936305 original size:9 final size:9
Alignment explanation
Indices: 39936291--39936317 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
39936281 GTGTGGACTT
39936291 TTTTTTTAA
1 TTTTTTTAA
39936300 TTTTTTTAA
1 TTTTTTTAA
39936309 TTTTTTTAA
1 TTTTTTTAA
39936318 AGTAATAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTTTTAA
Found at i:39937747 original size:23 final size:23
Alignment explanation
Indices: 39937709--39938142 Score: 272
Period size: 23 Copynumber: 18.5 Consensus size: 23
39937699 ATCTACTCTG
* *
39937709 TTTGGACAGC-TCTTATACATCAA
1 TTTGGACAGCAT-ATATACAACAA
* * *
39937732 TTTGGACAGCATTTATATACCAA
1 TTTGGACAGCATATATACAACAA
* * * *
39937755 ATTAGACAGCAT-TTTCACACCAAAA
1 TTTGGACAGCATATAT-ACA--ACAA
*
39937780 TTTGGACAGCATAAATACAACAA
1 TTTGGACAGCATATATACAACAA
39937803 TTTCGG-CAGCATATATACAACAA
1 TTT-GGACAGCATATATACAACAA
* * * *
39937826 TTT-GAGCAACATTTTTACACCAAA
1 TTTGGA-CAGCATATATACAAC-AA
* * *
39937850 ATTGGACAGCATAAATTCAACAA
1 TTTGGACAGCATATATACAACAA
*
39937873 TTTGGGCAGCATATATACAACAA
1 TTTGGACAGCATATATACAACAA
* * *
39937896 TTT-GAGCAGCATTTTTACACCAAA
1 TTTGGA-CAGCATATATACAAC-AA
* * *
39937920 ATTGGATAGCATATACACAACAAA
1 TTTGGACAGCATATATACAAC-AA
*
39937944 TTTGGGCAGCATATATACAACAA
1 TTTGGACAGCATATATACAACAA
* * *
39937967 TTT-GAGCAGCATTTTTACACCAAA
1 TTTGGA-CAGCATATATACAAC-AA
* * *
39937991 ATTGGACAGCATAAATTCAACAA
1 TTTGGACAGCATATATACAACAA
*
39938014 TTTGGGCAGCATATATACAACAA
1 TTTGGACAGCATATATACAACAA
* * *
39938037 TTT-GAGCAGCATTTTTACACCAAA
1 TTTGGA-CAGCATATATACAAC-AA
*
39938061 ATTGGACAGCATATATACAACAA
1 TTTGGACAGCATATATACAACAA
* * * *
39938084 ATTGGGCAGCATTTA-AGCATCAAA
1 TTTGGACAGCATATATA-CAAC-AA
* *
39938108 ATTGGACAGCATATATAAAACAA
1 TTTGGACAGCATATATACAACAA
* *
39938131 ATTGGGCAGCAT
1 TTTGGACAGCAT
39938143 TTAAGCATCA
Statistics
Matches: 316, Mismatches: 73, Indels: 44
0.73 0.17 0.10
Matches are distributed among these distances:
21 1 0.00
22 6 0.02
23 187 0.59
24 97 0.31
25 24 0.08
26 1 0.00
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.27
Consensus pattern (23 bp):
TTTGGACAGCATATATACAACAA
Found at i:39937881 original size:70 final size:70
Alignment explanation
Indices: 39937723--39938095 Score: 570
Period size: 70 Copynumber: 5.3 Consensus size: 70
39937713 GACAGCTCTT
* * * * *
39937723 ATACATCAATTTGGACAGCATTTATATACCA-AATTAGA-CAGCATTTTCACACCAAAATTTGGA
1 ATACAACAATTTGGGCAGCA--TATATACAACAATTTGAGCAGCATTTTTACACCAAAA-TTGGA
39937786 CAGCATAA
63 CAGCATAA
* *
39937794 ATACAACAATTTCGGCAGCATATATACAACAATTTGAGCAACATTTTTACACCAAAATTGGACAG
1 ATACAACAATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAG
39937859 CATAA
66 CATAA
* *
39937864 ATTCAACAATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGATAG
1 ATACAACAATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAG
*
39937929 CATAT
66 CATAA
*
39937934 ACACAACAAATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACA
1 ATACAAC-AATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACA
39937999 GCATAA
65 GCATAA
*
39938005 ATTCAACAATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAG
1 ATACAACAATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAG
*
39938070 CATAT
66 CATAA
*
39938075 ATACAACAAATTGGGCAGCAT
1 ATACAACAATTTGGGCAGCAT
39938096 TTAAGCATCA
Statistics
Matches: 278, Mismatches: 21, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
69 8 0.03
70 170 0.61
71 100 0.36
ACGTcount: A:0.41, C:0.19, G:0.13, T:0.27
Consensus pattern (70 bp):
ATACAACAATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAG
CATAA
Found at i:39937964 original size:141 final size:141
Alignment explanation
Indices: 39937729--39938095 Score: 598
Period size: 141 Copynumber: 2.6 Consensus size: 141
39937719 TCTTATACAT
* * * *
39937729 CAATTTGGACAGCATTTATATACCA-AATTAGA-CAGCATTTTCACACCAAAATTTGGACAGCAT
1 CAATTTGGGCAGCA--TATATACAACAATTTGAGCAGCATTTTTACACCAAAA-TTGGACAGCAT
* *
39937792 AAATACAAC-AATTTCGGCAGCATATATACAACAATTTGAGCAACATTTTTACACCAAAATTGGA
63 ATATACAACAAATTTGGGCAGCATATATACAACAATTTGAGCAACATTTTTACACCAAAATTGGA
39937856 CAGCATAAATTCAA
128 CAGCATAAATTCAA
*
39937870 CAATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGATAGCATATA
1 CAATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAGCATATA
* *
39937935 CACAACAAATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAG
66 TACAACAAATTTGGGCAGCATATATACAACAATTTGAGCAACATTTTTACACCAAAATTGGACAG
39938000 CATAAATTCAA
131 CATAAATTCAA
39938011 CAATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAGCATATA
1 CAATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAGCATATA
39938076 TACAACAAA-TTGGGCAGCAT
66 TACAACAAATTTGGGCAGCAT
39938096 TTAAGCATCA
Statistics
Matches: 212, Mismatches: 11, Indels: 7
0.92 0.05 0.03
Matches are distributed among these distances:
139 8 0.04
140 34 0.16
141 170 0.80
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.27
Consensus pattern (141 bp):
CAATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTACACCAAAATTGGACAGCATATA
TACAACAAATTTGGGCAGCATATATACAACAATTTGAGCAACATTTTTACACCAAAATTGGACAG
CATAAATTCAA
Found at i:39938145 original size:47 final size:46
Alignment explanation
Indices: 39937725--39938152 Score: 257
Period size: 47 Copynumber: 9.1 Consensus size: 46
39937715 CAGCTCTTAT
* * * * * * *
39937725 ACATC-AATTTGGACAGCATTTATATACCAAATTAGACAGCATTTTC
1 ACATCAAAATTGGACAGCATATATACAACAAATTGGGCAGCA-TTTA
* * * * *
39937771 ACACCAAAATTTGGACAGCATAAATACAACAATTTCGGCAGCATATA
1 ACATCAAAA-TTGGACAGCATATATACAACAAATTGGGCAGCATTTA
* * * * * * *
39937818 TACA--ACAATTTGAGCAACATTTTTACACCAAAATTGGACAGCA--TA
1 -ACATCAAAATTGGA-CAGCATATATACAAC-AAATTGGGCAGCATTTA
* * * *
39937863 A-ATTCAACAATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTT
1 ACA-TCAA-AA-TTGGACAGCATATATACAACAAATTGGGCAGCA-TTTA
* * * *
39937912 ACACCAAAATTGGATAGCATATACACAACAAATTTGGGCAGCATATA
1 ACATCAAAATTGGACAGCATATATACAACAAA-TTGGGCAGCATTTA
* * * * * *
39937959 TACA--ACAATTTGAGCAGCATTTTTACACCAAAATTGGACAGCA--TA
1 -ACATCAAAATTGGA-CAGCATATATACAAC-AAATTGGGCAGCATTTA
* * * *
39938004 A-ATTCAACAATTTGGGCAGCATATATACAACAATTTGAGCAGCATTTTT
1 ACA-TCAA-AA-TTGGACAGCATATATACAACAAATTGGGCAGCA-TTTA
*
39938053 ACACCAAAATTGGACAGCATATATACAACAAATTGGGCAGCATTTA
1 ACATCAAAATTGGACAGCATATATACAACAAATTGGGCAGCATTTA
*
39938099 AGCATCAAAATTGGACAGCATATATAAAACAAATTGGGCAGCATTTA
1 A-CATCAAAATTGGACAGCATATATACAACAAATTGGGCAGCATTTA
39938146 AGCATCA
1 A-CATCA
39938153 CCTATTCGAT
Statistics
Matches: 289, Mismatches: 65, Indels: 55
0.71 0.16 0.13
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
45 8 0.03
46 50 0.17
47 161 0.56
48 54 0.19
49 10 0.03
50 2 0.01
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (46 bp):
ACATCAAAATTGGACAGCATATATACAACAAATTGGGCAGCATTTA
Found at i:39942452 original size:11 final size:11
Alignment explanation
Indices: 39942436--39942467 Score: 64
Period size: 11 Copynumber: 2.9 Consensus size: 11
39942426 TTGATTAAAG
39942436 CTTTTCTGACA
1 CTTTTCTGACA
39942447 CTTTTCTGACA
1 CTTTTCTGACA
39942458 CTTTTCTGAC
1 CTTTTCTGAC
39942468 CACTCGAACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.16, C:0.28, G:0.09, T:0.47
Consensus pattern (11 bp):
CTTTTCTGACA
Found at i:39945776 original size:70 final size:70
Alignment explanation
Indices: 39945659--39945990 Score: 529
Period size: 70 Copynumber: 4.7 Consensus size: 70
39945649 AATTAGATAG
* * *
39945659 CATTTTCACACCAAAATTCGGACAGCATAAATACAATAATTTCGGCAGCATATATACAACAATTT
1 CATTTTTACACCAAAATT-GGACAGCATAAATACAACAATTTGGGCAGCATATATACAACAATTT
39945724 GAGCAA
65 GAGCAA
*
39945730 CATTTTTACACCAAAATTGGACAGCATAAATTCAACAATTTGGGCAGCATATATACAACAATTTG
1 CATTTTTACACCAAAATTGGACAGCATAAATACAACAATTTGGGCAGCATATATACAACAATTTG
*
39945795 AGCAG
66 AGCAA
* * *
39945800 CATTTTTACACCAAAATTGGATAGCATATACACAACAAATTTGGGCAGCATATATACAACAATTT
1 CATTTTTACACCAAAATTGGACAGCATAAATACAAC-AATTTGGGCAGCATATATACAACAATTT
*
39945865 GAGCAG
65 GAGCAA
*
39945871 CATTTTTACACCAAAATTGGACAGCATAAATTCAACAATTTGGGCAGCATATATACAACAATTTG
1 CATTTTTACACCAAAATTGGACAGCATAAATACAACAATTTGGGCAGCATATATACAACAATTTG
39945936 AGCAA
66 AGCAA
* * *
39945941 CATTTTTACACCAAAATTGGACAGCATATATGCAACAAATTGGGCAGCAT
1 CATTTTTACACCAAAATTGGACAGCATAAATACAACAATTTGGGCAGCAT
39945991 TTAAGCATCA
Statistics
Matches: 243, Mismatches: 17, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
70 160 0.66
71 83 0.34
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.27
Consensus pattern (70 bp):
CATTTTTACACCAAAATTGGACAGCATAAATACAACAATTTGGGCAGCATATATACAACAATTTG
AGCAA
Found at i:39945825 original size:24 final size:24
Alignment explanation
Indices: 39945666--39946037 Score: 173
Period size: 23 Copynumber: 15.8 Consensus size: 24
39945656 TAGCATTTTC
*
39945666 ACACCAAAATTCGGACAGCATAAAT
1 ACACCAAAATT-GGACAGCATATAT
*
39945691 ACA--ATAATTTCGG-CAGCATATAT
1 ACACCA-AAATT-GGACAGCATATAT
* * * * *
39945714 ACA--ACAATTTGAGCAACATTTTT
1 ACACCAAAATTGGA-CAGCATATAT
*
39945737 ACACCAAAATTGGACAGCATAAAT
1 ACACCAAAATTGGACAGCATATAT
* * * *
39945761 TCAAC-AATTTGGGCAGCATATAT
1 ACACCAAAATTGGACAGCATATAT
* * * *
39945784 ACA--ACAATTTGAGCAGCATTTTT
1 ACACCAAAATTGGA-CAGCATATAT
* *
39945807 ACACCAAAATTGGATAGCATATAC
1 ACACCAAAATTGGACAGCATATAT
* * *
39945831 ACAACAAATTTGGGCAGCATATAT
1 ACACCAAAATTGGACAGCATATAT
* * * *
39945855 ACA--ACAATTTGAGCAGCATTTTT
1 ACACCAAAATTGGA-CAGCATATAT
*
39945878 ACACCAAAATTGGACAGCATAAAT
1 ACACCAAAATTGGACAGCATATAT
* * * *
39945902 TCAAC-AATTTGGGCAGCATATAT
1 ACACCAAAATTGGACAGCATATAT
* * * * *
39945925 ACA--ACAATTTGAGCAACATTTTT
1 ACACCAAAATTGGA-CAGCATATAT
39945948 ACACCAAAATTGGACAGCATATAT
1 ACACCAAAATTGGACAGCATATAT
* * * *
39945972 GCAAC-AAATTGGGCAGCATTTA-
1 ACACCAAAATTGGACAGCATATAT
*
39945994 AGCATCAAAATTGGACAGCATATAT
1 A-CACCAAAATTGGACAGCATATAT
* * *
39946019 AAAAC-AAATTGGGCAGCAT
1 ACACCAAAATTGGACAGCAT
39946038 TTAAGCATCA
Statistics
Matches: 251, Mismatches: 77, Indels: 40
0.68 0.21 0.11
Matches are distributed among these distances:
21 1 0.00
22 16 0.06
23 121 0.48
24 81 0.32
25 32 0.13
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.26
Consensus pattern (24 bp):
ACACCAAAATTGGACAGCATATAT
Found at i:39945828 original size:47 final size:47
Alignment explanation
Indices: 39945769--39946039 Score: 237
Period size: 47 Copynumber: 5.8 Consensus size: 47
39945759 ATTCAACAAT
* * *
39945769 TTGGGCAGCATATATACAACAATTTGAGCAGCATTTTTACACCAAAA
1 TTGGACAGCATATATACAACAAATTGGGCAGCATTTTTACACCAAAA
* * * * *
39945816 TTGGATAGCATATACACAACAAATTTGGGCAGCATATATACA--ACAA
1 TTGGACAGCATATATACAACAAA-TTGGGCAGCATTTTTACACCAAAA
* * * * * ** * *
39945862 TTTGAGCAGCATTTTTACACCAAAATTGGACAGCATAAATT-CAAC-AAT
1 TTGGA-CAGCATATATACAAC-AAATTGGGCAGCAT-TTTTACACCAAAA
* * * *
39945910 TTGGGCAGCATATATACAACAATTTGAGCAACATTTTTACACCAAAA
1 TTGGACAGCATATATACAACAAATTGGGCAGCATTTTTACACCAAAA
* * *
39945957 TTGGACAGCATATATGCAACAAATTGGGCAGCA-TTTAAGCATCAAAA
1 TTGGACAGCATATATACAACAAATTGGGCAGCATTTTTA-CACCAAAA
*
39946004 TTGGACAGCATATATAAAACAAATTGGGCAGCATTT
1 TTGGACAGCATATATACAACAAATTGGGCAGCATTT
39946040 AAGCATCACC
Statistics
Matches: 173, Mismatches: 41, Indels: 19
0.74 0.18 0.08
Matches are distributed among these distances:
45 2 0.01
46 24 0.14
47 121 0.70
48 26 0.15
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (47 bp):
TTGGACAGCATATATACAACAAATTGGGCAGCATTTTTACACCAAAA
Found at i:39945859 original size:141 final size:141
Alignment explanation
Indices: 39945657--39945990 Score: 564
Period size: 141 Copynumber: 2.4 Consensus size: 141
39945647 CAAATTAGAT
* * * *
39945657 AGCATTTTCACACCAAAATTCGGACAGCATAAATACAA-TAATTTCGGCAGCATATATACAACAA
1 AGCATTTTTACACCAAAATT-GGACAGCATATATACAACAAATTTGGGCAGCATATATACAACAA
39945721 TTTGAGCAACATTTTTACACCAAAATTGGACAGCATAAATTCAACAATTTGGGCAGCATATATAC
65 TTTGAGCAACATTTTTACACCAAAATTGGACAGCATAAATTCAACAATTTGGGCAGCATATATAC
39945786 AACAATTTGAGC
130 AACAATTTGAGC
* *
39945798 AGCATTTTTACACCAAAATTGGATAGCATATACACAACAAATTTGGGCAGCATATATACAACAAT
1 AGCATTTTTACACCAAAATTGGACAGCATATATACAACAAATTTGGGCAGCATATATACAACAAT
*
39945863 TTGAGCAGCATTTTTACACCAAAATTGGACAGCATAAATTCAACAATTTGGGCAGCATATATACA
66 TTGAGCAACATTTTTACACCAAAATTGGACAGCATAAATTCAACAATTTGGGCAGCATATATACA
39945928 ACAATTTGAGC
131 ACAATTTGAGC
* *
39945939 AACATTTTTACACCAAAATTGGACAGCATATATGCAACAAA-TTGGGCAGCAT
1 AGCATTTTTACACCAAAATTGGACAGCATATATACAACAAATTTGGGCAGCAT
39945991 TTAAGCATCA
Statistics
Matches: 181, Mismatches: 11, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
140 25 0.14
141 156 0.86
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (141 bp):
AGCATTTTTACACCAAAATTGGACAGCATATATACAACAAATTTGGGCAGCATATATACAACAAT
TTGAGCAACATTTTTACACCAAAATTGGACAGCATAAATTCAACAATTTGGGCAGCATATATACA
ACAATTTGAGC
Found at i:39950277 original size:21 final size:21
Alignment explanation
Indices: 39950251--39950290 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
39950241 AAATGTAAGA
*
39950251 ATTAAATTAAAAACAAAAAAT
1 ATTAAAATAAAAACAAAAAAT
*
39950272 ATTAAAATAAAAATAAAAA
1 ATTAAAATAAAAACAAAAA
39950291 TAAAAAAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.23
Consensus pattern (21 bp):
ATTAAAATAAAAACAAAAAAT
Found at i:39950302 original size:27 final size:28
Alignment explanation
Indices: 39950240--39950303 Score: 76
Period size: 27 Copynumber: 2.3 Consensus size: 28
39950230 AAGAAAAATT
* *
39950240 AAAATGTAAGAATTAAATTAAAAACAAAA
1 AAAAT-TAAGAATAAAAATAAAAACAAAA
* *
39950269 AATATTAA-AATAAAAATAAAAATAAAA
1 AAAATTAAGAATAAAAATAAAAACAAAA
39950296 AAAATTAA
1 AAAATTAA
39950304 TAGAAATAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
27 23 0.77
28 3 0.10
29 4 0.13
ACGTcount: A:0.73, C:0.02, G:0.03, T:0.22
Consensus pattern (28 bp):
AAAATTAAGAATAAAAATAAAAACAAAA
Found at i:39954736 original size:14 final size:15
Alignment explanation
Indices: 39954706--39954738 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
39954696 TTAACTCCTC
39954706 TTTAATCTTTCAAAT
1 TTTAATCTTTCAAAT
*
39954721 TTTAATC-TTCATAT
1 TTTAATCTTTCAAAT
39954735 TTTA
1 TTTA
39954739 CAAAAATTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 10 0.59
15 7 0.41
ACGTcount: A:0.30, C:0.12, G:0.00, T:0.58
Consensus pattern (15 bp):
TTTAATCTTTCAAAT
Found at i:39959046 original size:43 final size:43
Alignment explanation
Indices: 39958876--39959047 Score: 106
Period size: 43 Copynumber: 4.0 Consensus size: 43
39958866 CATAAGATTC
* * * * *
39958876 CGATATGTGATTACGTGTAAGACCACATCTGGGACGCTGGCAT
1 CGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCAT
* * ** *
39958919 C-A-ATTTGCGATTT-ATGTATAAGACCATGTCTGGGACATCAGTAT
1 CGATATTT--GATTTCATG--TAAGACCACGTCTGGGACGTTGGCAT
** * *
39958963 CG-TATAGGAGTTCATGTAAGACC-CTGTC-GGAGATAG-TGGCAT
1 CGATATTTGATTTCATGTAAGACCAC-GTCTGG-GA-CGTTGGCAT
39959005 CGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCAT
1 CGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCAT
39959048 TGAATGAGCT
Statistics
Matches: 92, Mismatches: 23, Indels: 28
0.64 0.16 0.20
Matches are distributed among these distances:
41 5 0.05
42 21 0.23
43 38 0.41
44 26 0.28
45 2 0.02
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
CGATATTTGATTTCATGTAAGACCACGTCTGGGACGTTGGCAT
Found at i:39963275 original size:17 final size:16
Alignment explanation
Indices: 39963249--39963282 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
39963239 TTAAAATTAA
*
39963249 AAAATAAAAATAGAGT
1 AAAATAAAAAAAGAGT
39963265 AAAATAGAAAAAAGAGT
1 AAAATA-AAAAAAGAGT
39963282 A
1 A
39963283 TGAACTATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (16 bp):
AAAATAAAAAAAGAGT
Found at i:39964774 original size:13 final size:13
Alignment explanation
Indices: 39964752--39964789 Score: 51
Period size: 12 Copynumber: 3.0 Consensus size: 13
39964742 ATGTATTGTA
*
39964752 TATATTAAAAATT
1 TATATAAAAAATT
39964765 TATATAAAAAA-T
1 TATATAAAAAATT
*
39964777 AATATAAAAAATT
1 TATATAAAAAATT
39964790 AATACTAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
12 11 0.50
13 11 0.50
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (13 bp):
TATATAAAAAATT
Found at i:39964792 original size:13 final size:13
Alignment explanation
Indices: 39964753--39964793 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
39964743 TGTATTGTAT
* *
39964753 ATATTAAAAATTT
1 ATATAAAAAATTA
39964766 ATATAAAAAA-TA
1 ATATAAAAAATTA
39964778 ATATAAAAAATTA
1 ATATAAAAAATTA
39964791 ATA
1 ATA
39964794 CTAGAAGGCC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
12 11 0.44
13 14 0.56
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
ATATAAAAAATTA
Found at i:39971726 original size:21 final size:22
Alignment explanation
Indices: 39971702--39971744 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
39971692 TATTTTTAAA
39971702 ATATAATTATATATAA-CACTT
1 ATATAATTATATATAAGCACTT
* *
39971723 ATATACTTATATTTAAGCACTT
1 ATATAATTATATATAAGCACTT
39971745 TACTGAGTTG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 14 0.74
22 5 0.26
ACGTcount: A:0.42, C:0.12, G:0.02, T:0.44
Consensus pattern (22 bp):
ATATAATTATATATAAGCACTT
Found at i:39973821 original size:21 final size:21
Alignment explanation
Indices: 39973731--39973825 Score: 65
Period size: 21 Copynumber: 4.6 Consensus size: 21
39973721 TAGGATTATT
* *
39973731 ATTAAAAATAATTTAATCATA
1 ATTAAATATAATTTAATAATA
* *
39973752 TTTTAATATAA-TT-AT--T-
1 ATTAAATATAATTTAATAATA
*
39973768 ATTAAATATAATTTAATAAAA
1 ATTAAATATAATTTAATAATA
*
39973789 ATAAAAATATATAATTTAATAATA
1 AT--TAA-ATATAATTTAATAATA
*
39973813 ATTTAATATAATT
1 ATTAAATATAATT
39973826 ATTTTTATAT
Statistics
Matches: 56, Mismatches: 10, Indels: 16
0.68 0.12 0.20
Matches are distributed among these distances:
16 9 0.16
17 3 0.05
18 2 0.04
19 2 0.04
20 2 0.04
21 18 0.32
22 1 0.02
23 2 0.04
24 17 0.30
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (21 bp):
ATTAAATATAATTTAATAATA
Found at i:39981317 original size:28 final size:27
Alignment explanation
Indices: 39981286--39981350 Score: 78
Period size: 28 Copynumber: 2.3 Consensus size: 27
39981276 GAATTTAATC
39981286 AATTTTATTTTA-ATTTTGATATTTTTTT
1 AATTTTATTTTACATTTT-A-ATTTTTTT
*
39981314 AATTTAATTTTTACATTTTAATTTTTTT
1 AATTTTA-TTTTACATTTTAATTTTTTT
39981342 AATTCTTAT
1 AATT-TTAT
39981351 AGTTTTTTTA
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
28 19 0.59
29 8 0.25
30 5 0.16
ACGTcount: A:0.28, C:0.03, G:0.02, T:0.68
Consensus pattern (27 bp):
AATTTTATTTTACATTTTAATTTTTTT
Found at i:39981323 original size:14 final size:14
Alignment explanation
Indices: 39981306--39981345 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
39981296 TAATTTTGAT
39981306 ATTTTTTTAATTTA
1 ATTTTTTTAATTTA
** *
39981320 ATTTTTACATTTTA
1 ATTTTTTTAATTTA
39981334 ATTTTTTTAATT
1 ATTTTTTTAATT
39981346 CTTATAGTTT
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (14 bp):
ATTTTTTTAATTTA
Found at i:39981331 original size:22 final size:22
Alignment explanation
Indices: 39981288--39981332 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
39981278 ATTTAATCAA
* *
39981288 TTTTATTTTAATTTTGATATTT
1 TTTTAATTTAATTTTGACATTT
*
39981310 TTTTAATTTAATTTTTACATTT
1 TTTTAATTTAATTTTGACATTT
39981332 T
1 T
39981333 AATTTTTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (22 bp):
TTTTAATTTAATTTTGACATTT
Found at i:39983976 original size:62 final size:62
Alignment explanation
Indices: 39983878--39984024 Score: 199
Period size: 62 Copynumber: 2.4 Consensus size: 62
39983868 ATAACACACC
* * * *
39983878 ACGTTGTGGCTAAGCCACTAAATTTTGCAGTCAAGCTACATATTGT-AGACAAGCCACTCATA
1 ACGTTGTGGCTAAGCCACTCAATATTACAGTCAAGCTACACATTGTGA-ACAAGCCACTCATA
* * *
39983940 GCGTTGTGGCTAAGCCACTCAATATTACAGTCAAGCTGCACGTTGTGAACAAGCCACTCATA
1 ACGTTGTGGCTAAGCCACTCAATATTACAGTCAAGCTACACATTGTGAACAAGCCACTCATA
39984002 ACGTTGTGGGC-AAGCCACTCAAT
1 ACGTTGT-GGCTAAGCCACTCAAT
39984025 TTTTGCAGTA
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
62 71 0.95
63 4 0.05
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.25
Consensus pattern (62 bp):
ACGTTGTGGCTAAGCCACTCAATATTACAGTCAAGCTACACATTGTGAACAAGCCACTCATA
Found at i:39984009 original size:23 final size:23
Alignment explanation
Indices: 39983979--39984022 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
39983969 GTCAAGCTGC
39983979 ACGTTGTGAACAAGCCACTCATA
1 ACGTTGTGAACAAGCCACTCATA
**
39984002 ACGTTGTGGGCAAGCCACTCA
1 ACGTTGTGAACAAGCCACTCA
39984023 ATTTTTGCAG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.30, C:0.27, G:0.23, T:0.20
Consensus pattern (23 bp):
ACGTTGTGAACAAGCCACTCATA
Found at i:39984202 original size:42 final size:41
Alignment explanation
Indices: 39984114--39984269 Score: 186
Period size: 42 Copynumber: 3.7 Consensus size: 41
39984104 TTTCAACAGG
* * * * * *
39984114 CATGCTTAACATGCGAATCAAATCTAAGATCAACATAGTCGG
1 CATGCTTAACATGCAAATCAAATCTCAGTTTATCATA-TCGA
*
39984156 CATGCTTAACATGCAAATTAAATCTCAGTTTATCATCATCGA
1 CATGCTTAACATGCAAATCAAATCTCAGTTTATCAT-ATCGA
* * *
39984198 CATGCTTAATATGTAAATCAAATATCAGTTTATCATAATCGA
1 CATGCTTAACATGCAAATCAAATCTCAGTTTATCAT-ATCGA
*
39984240 CATGCTTAATATGCAAATCAAATCTCAGTT
1 CATGCTTAACATGCAAATCAAATCTCAGTT
39984270 AATAAATCAG
Statistics
Matches: 99, Mismatches: 14, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
42 98 0.99
43 1 0.01
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (41 bp):
CATGCTTAACATGCAAATCAAATCTCAGTTTATCATATCGA
Found at i:39986473 original size:126 final size:126
Alignment explanation
Indices: 39986331--39986621 Score: 469
Period size: 126 Copynumber: 2.3 Consensus size: 126
39986321 TAATTTTAAA
*
39986331 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCAAGAAGATGTTT
1 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCAAGAAGACGTTT
*
39986396 CTGAGCAAATAGTGTCAAAAACACTTTAAGCAAG-ATGTTTTGTCAGCAAAAGTACTGAAAG
66 CTGAGCAAATAGTGTCAAAAACACTTTAAG-AAGTATGCTTTGTCAGCAAAAGTACTGAAAG
* * *
39986457 AAGCTCCCACGTGGACGCGCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCGAGTAGACGTTT
1 AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCAAGAAGACGTTT
* * * *
39986522 CTGAGCAGATAGTGTCAAAAACGCTTTAAGTAGTATGCTTTGTCAGCAAAAGTATTGAAAG
66 CTGAGCAAATAGTGTCAAAAACACTTTAAGAAGTATGCTTTGTCAGCAAAAGTACTGAAAG
39986583 AAGCTCCCACGTGGACG-TGCTTTTGCTACAGTAGCTCCT
1 AAGCTCCCACGTGGACGCT-CTTTTGCTACAGTAGCTCCT
39986622 ATTTGGCCTG
Statistics
Matches: 153, Mismatches: 10, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
125 2 0.01
126 151 0.99
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.27
Consensus pattern (126 bp):
AAGCTCCCACGTGGACGCTCTTTTGCTACAGTAGCTCCTGAAAAAATAATTTCAAGAAGACGTTT
CTGAGCAAATAGTGTCAAAAACACTTTAAGAAGTATGCTTTGTCAGCAAAAGTACTGAAAG
Found at i:39989967 original size:23 final size:23
Alignment explanation
Indices: 39989922--39989969 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
39989912 AATAAAATAC
*
39989922 CCTAACCCGAAATACTAACTAAA
1 CCTAACCCGAAATACCAACTAAA
* * *
39989945 CCTAACCCGAATTACCCATTAAA
1 CCTAACCCGAAATACCAACTAAA
39989968 CC
1 CC
39989970 CTAGCCCAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.42, C:0.35, G:0.04, T:0.19
Consensus pattern (23 bp):
CCTAACCCGAAATACCAACTAAA
Found at i:39991080 original size:3 final size:3
Alignment explanation
Indices: 39991072--39991096 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
39991062 ATTTTAATCC
39991072 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
39991097 TCTCCTTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:39992683 original size:21 final size:21
Alignment explanation
Indices: 39992659--39992706 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
39992649 GTGGGGGCTG
*
39992659 TGGTTGCTCCGG-CGGGGATTC
1 TGGTTGCTCCGGTAGGGGA-TC
* *
39992680 TGGTTCCTCTGGTAGGGGATC
1 TGGTTGCTCCGGTAGGGGATC
39992701 TGGTTG
1 TGGTTG
39992707 TCTGTGTTGG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 17 0.77
22 5 0.23
ACGTcount: A:0.06, C:0.19, G:0.42, T:0.33
Consensus pattern (21 bp):
TGGTTGCTCCGGTAGGGGATC
Found at i:39992913 original size:18 final size:18
Alignment explanation
Indices: 39992887--39992929 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
39992877 GATTAGAAAA
* * *
39992887 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
39992905 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
39992923 AGGATAC
1 AGGATAC
39992930 GCACCTGGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:39993554 original size:7 final size:7
Alignment explanation
Indices: 39993542--39993629 Score: 176
Period size: 7 Copynumber: 12.6 Consensus size: 7
39993532 TATTAGTTAT
39993542 ATACATA
1 ATACATA
39993549 ATACATA
1 ATACATA
39993556 ATACATA
1 ATACATA
39993563 ATACATA
1 ATACATA
39993570 ATACATA
1 ATACATA
39993577 ATACATA
1 ATACATA
39993584 ATACATA
1 ATACATA
39993591 ATACATA
1 ATACATA
39993598 ATACATA
1 ATACATA
39993605 ATACATA
1 ATACATA
39993612 ATACATA
1 ATACATA
39993619 ATACATA
1 ATACATA
39993626 ATAC
1 ATAC
39993630 TAAATACTAA
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 81 1.00
ACGTcount: A:0.57, C:0.15, G:0.00, T:0.28
Consensus pattern (7 bp):
ATACATA
Found at i:39993635 original size:7 final size:7
Alignment explanation
Indices: 39993625--39993657 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
39993615 CATAATACAT
39993625 AATACTA
1 AATACTA
39993632 AATACTA
1 AATACTA
39993639 AATACTA
1 AATACTA
39993646 AATACTA
1 AATACTA
39993653 AATAC
1 AATAC
39993658 CAATCGATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:39995222 original size:33 final size:33
Alignment explanation
Indices: 39995185--39995280 Score: 91
Period size: 33 Copynumber: 3.1 Consensus size: 33
39995175 TTTAATCTAC
39995185 TAAATAATTAACTAAATTACATAGTATTTATTA
1 TAAATAATTAACTAAATTACATAGTATTTATTA
* ** *
39995218 TAAATTATT---TTTATTA-A-A--ATGTA-TA
1 TAAATAATTAACTAAATTACATAGTATTTATTA
39995243 CTAAATAATTAACTAAATTACATAGTATTTATTA
1 -TAAATAATTAACTAAATTACATAGTATTTATTA
39995277 TAAA
1 TAAA
39995281 CATCTACTCG
Statistics
Matches: 46, Mismatches: 8, Indels: 18
0.64 0.11 0.25
Matches are distributed among these distances:
25 2 0.04
26 12 0.26
28 1 0.02
29 6 0.13
30 6 0.13
31 1 0.02
33 16 0.35
34 2 0.04
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (33 bp):
TAAATAATTAACTAAATTACATAGTATTTATTA
Found at i:39996399 original size:2 final size:2
Alignment explanation
Indices: 39996392--39996416 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
39996382 CTATTAGGTT
39996392 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
39996417 GAAAAAGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Done.