Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 132 of 173
Found at i:40246654 original size:23 final size:23
Alignment explanation
Indices: 40246620--40246682 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 23
40246610 TTTTCACAAA
*
40246620 CAAATTCTCTCTCAAATTTTC-TC
1 CAAATT-TCTCTCAAATTTCCTTC
40246643 TC-AATTTCCTCTC-AATTTCCTTC
1 -CAAATTT-CTCTCAAATTTCCTTC
40246666 CAAATTTCTCTCAAATT
1 CAAATTTCTCTCAAATT
40246683 CATATTTAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 9
0.77 0.02 0.20
Matches are distributed among these distances:
22 13 0.38
23 20 0.59
24 1 0.03
ACGTcount: A:0.25, C:0.30, G:0.00, T:0.44
Consensus pattern (23 bp):
CAAATTTCTCTCAAATTTCCTTC
Found at i:40246740 original size:51 final size:51
Alignment explanation
Indices: 40246641--40246740 Score: 128
Period size: 51 Copynumber: 2.0 Consensus size: 51
40246631 TCAAATTTTC
* * *
40246641 TCTCAATTTCCTCTCAATTTCCTTCCAAATTTCTCTCAAATTCATATTTAA
1 TCTCAATTACCTCACAATTTCCTTCCAAATTTCTCTCAAATCCATATTTAA
* ** * *
40246692 TCTCAATTAGCTCACAATTTCCTTTTAAATTTCTCTTAAATCCCTATTT
1 TCTCAATTACCTCACAATTTCCTTCCAAATTTCTCTCAAATCCATATTT
40246741 TTAAATAATT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
51 41 1.00
ACGTcount: A:0.27, C:0.26, G:0.01, T:0.46
Consensus pattern (51 bp):
TCTCAATTACCTCACAATTTCCTTCCAAATTTCTCTCAAATCCATATTTAA
Found at i:40249814 original size:18 final size:16
Alignment explanation
Indices: 40249773--40249817 Score: 54
Period size: 18 Copynumber: 2.6 Consensus size: 16
40249763 CATTTTAAAT
*
40249773 TTTTATATATAATATA
1 TTTTATATATAACATA
40249789 TGTTTATATATATACATCA
1 T-TTTATATATA-ACAT-A
40249808 TTTTATATAT
1 TTTTATATAT
40249818 GTTATTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
16 1 0.04
17 10 0.40
18 12 0.48
19 2 0.08
ACGTcount: A:0.38, C:0.04, G:0.02, T:0.56
Consensus pattern (16 bp):
TTTTATATATAACATA
Found at i:40249893 original size:21 final size:21
Alignment explanation
Indices: 40249868--40249907 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
40249858 CCAATTTTCT
40249868 CTTTTATATATTATATTAAAC
1 CTTTTATATATTATATTAAAC
* *
40249889 CTTTTATTTATTATCTTAA
1 CTTTTATATATTATATTAA
40249908 CCTAACTTAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.33, C:0.10, G:0.00, T:0.57
Consensus pattern (21 bp):
CTTTTATATATTATATTAAAC
Found at i:40250772 original size:28 final size:28
Alignment explanation
Indices: 40250732--40250788 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
40250722 CCATGTTCGG
40250732 TGTTTAGGAATTTCAAGAAATTAAACCC
1 TGTTTAGGAATTTCAAGAAATTAAACCC
* *
40250760 TGTTTAGGAATTTCAGGAAATTAAGCCC
1 TGTTTAGGAATTTCAAGAAATTAAACCC
40250788 T
1 T
40250789 AACTTATTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.33
Consensus pattern (28 bp):
TGTTTAGGAATTTCAAGAAATTAAACCC
Found at i:40252345 original size:22 final size:21
Alignment explanation
Indices: 40252284--40252498 Score: 144
Period size: 22 Copynumber: 9.6 Consensus size: 21
40252274 TAACCCTAAT
*
40252284 CCTAACCCTTAACTTAAAAAC
1 CCTAACCCTAAACTTAAAAAC
*
40252305 TCTAACCCTTAAA-TTAAAAAC
1 CCTAACCC-TAAACTTAAAAAC
*
40252326 ACTAACCCTAAACTTAAAAAAC
1 CCTAACCCTAAACTT-AAAAAC
* *
40252348 TCAAACCCTAAACTTAAAAAC
1 CCTAACCCTAAACTTAAAAAC
*
40252369 CCTAAACCCTAAATTTTAAAACCCCAAAC
1 CCT-AACCCTAAA-CTT--AA----AAAC
*
40252398 CCTAAACCCTAAACCTAAAAAC
1 CCT-AACCCTAAACTTAAAAAC
* * *
40252420 CATAAACCCTAAACCTAAAAAT
1 CCT-AACCCTAAACTTAAAAAC
** * *
40252442 AATAAACCCTAGACCTAAAAAC
1 CCT-AACCCTAAACTTAAAAAC
*
40252464 CCTAAACACTAAACTTAAAAAC
1 CCT-AACCCTAAACTTAAAAAC
*
40252486 CTTAAACCCTAAA
1 CCT-AACCCTAAA
40252499 ACCTTAACTT
Statistics
Matches: 161, Mismatches: 22, Indels: 21
0.79 0.11 0.10
Matches are distributed among these distances:
20 4 0.02
21 31 0.19
22 102 0.63
23 2 0.01
25 2 0.01
26 2 0.01
28 1 0.01
29 17 0.11
ACGTcount: A:0.50, C:0.30, G:0.00, T:0.20
Consensus pattern (21 bp):
CCTAACCCTAAACTTAAAAAC
Found at i:40252375 original size:7 final size:7
Alignment explanation
Indices: 40252365--40252438 Score: 62
Period size: 7 Copynumber: 10.4 Consensus size: 7
40252355 CTAAACTTAA
40252365 AAACCCT
1 AAACCCT
40252372 AAACCCT
1 AAACCCT
***
40252379 AAATTTT
1 AAACCCT
*
40252386 AAAACCCC
1 -AAACCCT
40252394 AAACCCT
1 AAACCCT
40252401 AAACCCT
1 AAACCCT
40252408 AAA-CCT
1 AAACCCT
*
40252414 AAAAACCAT
1 --AAACCCT
40252423 AAACCCT
1 AAACCCT
40252430 AAA-CCT
1 AAACCCT
40252436 AAA
1 AAA
40252439 AATAATAAAC
Statistics
Matches: 53, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
6 9 0.17
7 36 0.68
8 6 0.11
9 2 0.04
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (7 bp):
AAACCCT
Found at i:40252397 original size:29 final size:29
Alignment explanation
Indices: 40252365--40252438 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
40252355 CTAAACTTAA
** * *
40252365 AAACCCTAAACCCTAAATTTTAAAACCCC
1 AAACCCTAAACCCTAAACCTAAAAACCAC
*
40252394 AAACCCTAAACCCTAAACCTAAAAACCAT
1 AAACCCTAAACCCTAAACCTAAAAACCAC
40252423 AAACCCTAAA-CCTAAA
1 AAACCCTAAACCCTAAA
40252439 AATAATAAAC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.50, C:0.34, G:0.00, T:0.16
Consensus pattern (29 bp):
AAACCCTAAACCCTAAACCTAAAAACCAC
Found at i:40252448 original size:29 final size:29
Alignment explanation
Indices: 40252365--40252449 Score: 91
Period size: 29 Copynumber: 2.9 Consensus size: 29
40252355 CTAAACTTAA
** * **
40252365 AAACCCTAAACCCTAAATTTTAAAACCCC
1 AAACCCTAAACCCTAAAAATAAAAACCAT
**
40252394 AAACCCTAAACCCTAAACCTAAAAACCAT
1 AAACCCTAAACCCTAAAAATAAAAACCAT
40252423 AAACCCTAAA-CCTAAAAATAATAAACC
1 AAACCCTAAACCCTAAAAATAA-AAACC
40252450 CTAGACCTAA
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
28 9 0.19
29 39 0.81
ACGTcount: A:0.52, C:0.32, G:0.00, T:0.16
Consensus pattern (29 bp):
AAACCCTAAACCCTAAAAATAAAAACCAT
Found at i:40252492 original size:29 final size:29
Alignment explanation
Indices: 40252460--40252523 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
40252450 CTAGACCTAA
*
40252460 AAACCCT-AAACACTAAACTTAAAAACCTT
1 AAACCCTAAAAC-CTAAACTTAAAAACCCT
* *
40252489 AAACCCTAAAACCTTAACTTTAAAACCCT
1 AAACCCTAAAACCTAAACTTAAAAACCCT
40252518 -AACCCT
1 AAACCCT
40252524 TAAGTTAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
28 6 0.19
29 21 0.68
30 4 0.13
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (29 bp):
AAACCCTAAAACCTAAACTTAAAAACCCT
Found at i:40252501 original size:37 final size:37
Alignment explanation
Indices: 40252423--40252499 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
40252413 TAAAAACCAT
*
40252423 AAACCCTAAACCTAAAAATAATAAACCCTAGACCTAA
1 AAACCCTAAACCTAAAAATAATAAACCCTAAACCTAA
** *
40252460 AAACCCTAAACACTAAACTTAA-AAACCTTAAACCCTAA
1 AAACCCTAAAC-CTAAAAATAATAAACCCTAAA-CCTAA
40252498 AA
1 AA
40252500 CCTTAACTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
37 19 0.56
38 15 0.44
ACGTcount: A:0.55, C:0.27, G:0.01, T:0.17
Consensus pattern (37 bp):
AAACCCTAAACCTAAAAATAATAAACCCTAAACCTAA
Found at i:40256136 original size:125 final size:124
Alignment explanation
Indices: 40255706--40256268 Score: 693
Period size: 124 Copynumber: 4.5 Consensus size: 124
40255696 CAAACATGCT
* * * * * *
40255706 ACTGTAGCAAAAGCGCGTCCACGTGGGCGTGATTTCACAAATTTTTCTCATAAAGCATTCTGGTA
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTT
* *
40255771 GAAGCAATTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGA-AA
66 GAAGCGATTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTT-TTCCAGGACCA
* * *
40255830 ACTGTAGCCAAAGCGCGTCTACGAGGGCGCGATTTCAGAAATTCTTCTCA-AATAGCATCCTGCT
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTGCT
* * * * * *
40255894 TGAAGCGTTTTTATACTATTTGCTCAGAAACGTCAACTTGAAATAATTTTTTCAGGACCT
65 TGAAGCGATTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTTTTCCAGGACCA
* * *
40255954 ACTGTAGCAAAAGCGCGTCCAC-ATGGGCGCGGTTTCACAAATTCTTCTCATAAAGCATCATGGT
1 ACTGTAGCAAAAGCGCGTCCACGA-GGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCT
*
40256018 AT-AAGTGATTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGACCA
65 -TGAAGCGATTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTT-TTCCAGGACCA
* * * * *
40256079 ACTGTGGCAAAAGCGCATCCAGGAGGGCGCGATTTCACAAATTCTTCGCATATAGCATCCTGCTT
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTT
* * * *
40256144 GAAGCGTTTTTTATACTATTTGCTCAGAAACGTCAACTCAAAATTATTTTTCCAGGACCT
66 GAAGCG-ATTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTTTTCCAGGACCA
* * * * * * * * *
40256204 ACTGTAGCAAAAGCGCATACACGTGGGCGCGACTGCAAAAATCCTTCTGATAAATCATCCTGCTT
1 ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTT
40256269 TGATTTTATC
Statistics
Matches: 375, Mismatches: 55, Indels: 17
0.84 0.12 0.04
Matches are distributed among these distances:
123 10 0.03
124 192 0.51
125 133 0.35
126 40 0.11
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (124 bp):
ACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTT
GAAGCGATTTTATACTATTTGCTCAGAAACATCAACTCGAAATTATTTTTCCAGGACCA
Found at i:40256438 original size:16 final size:17
Alignment explanation
Indices: 40256417--40256451 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
40256407 TTAATTTCTC
40256417 TCTG-AAACCTTAAAAA
1 TCTGAAAACCTTAAAAA
40256433 TCTGAAAAACCTTAAAAA
1 TCTG-AAAACCTTAAAAA
40256451 T
1 T
40256452 TCTAACGTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
18 13 0.76
ACGTcount: A:0.51, C:0.17, G:0.06, T:0.26
Consensus pattern (17 bp):
TCTGAAAACCTTAAAAA
Found at i:40261647 original size:86 final size:86
Alignment explanation
Indices: 40261492--40261678 Score: 356
Period size: 86 Copynumber: 2.2 Consensus size: 86
40261482 TTGTCATTAG
*
40261492 TTCTCATCTCTATATCAACCCCTTTCATATCTCTATTACAGCCCTCAAAAACTTCTTTCCCTTTC
1 TTCTCATAT-TATATCAACCCCTTTCATATCTCTATTACAGCCCTCAAAAACTTCTTTCCCTTTC
40261557 GATCGTATAATAATTTCTCTTC
65 GATCGTATAATAATTTCTCTTC
40261579 TTCTCATATTATATCAACCCCTTTCATATCTCTATTACAGCCCTCAAAAACTTCTTTCCCTTTCG
1 TTCTCATATTATATCAACCCCTTTCATATCTCTATTACAGCCCTCAAAAACTTCTTTCCCTTTCG
40261644 ATCGTATAATAATTTCTCTTC
66 ATCGTATAATAATTTCTCTTC
40261665 TTCTCATATTATAT
1 TTCTCATATTATAT
40261679 GATTGGTCAT
Statistics
Matches: 99, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
86 91 0.92
87 8 0.08
ACGTcount: A:0.25, C:0.29, G:0.03, T:0.43
Consensus pattern (86 bp):
TTCTCATATTATATCAACCCCTTTCATATCTCTATTACAGCCCTCAAAAACTTCTTTCCCTTTCG
ATCGTATAATAATTTCTCTTC
Found at i:40262763 original size:9 final size:10
Alignment explanation
Indices: 40262737--40262761 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
40262727 AGTTTTAAAA
40262737 TTTAAATATT
1 TTTAAATATT
40262747 TTTAAATATT
1 TTTAAATATT
40262757 TTTAA
1 TTTAA
40262762 TAGTATAGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TTTAAATATT
Found at i:40263450 original size:130 final size:130
Alignment explanation
Indices: 40263261--40263519 Score: 518
Period size: 130 Copynumber: 2.0 Consensus size: 130
40263251 GCCCAATACG
40263261 TTAGGGCACAATTTCCTAAAATCCAAAACATTCAATATTTTTTTTATTTTTTTAAAAAAATCTGT
1 TTAGGGCACAATTTCCTAAAATCCAAAACATTCAATATTTTTTTTATTTTTTTAAAAAAATCTGT
40263326 CTCGAGAAATCGATGTGTAACATCTAATACGTCAGGACACAACATATTGAATTCCCGATGAAAAC
66 CTCGAGAAATCGATGTGTAACATCTAATACGTCAGGACACAACATATTGAATTCCCGATGAAAAC
40263391 TTAGGGCACAATTTCCTAAAATCCAAAACATTCAATATTTTTTTTATTTTTTTAAAAAAATCTGT
1 TTAGGGCACAATTTCCTAAAATCCAAAACATTCAATATTTTTTTTATTTTTTTAAAAAAATCTGT
40263456 CTCGAGAAATCGATGTGTAACATCTAATACGTCAGGACACAACATATTGAATTCCCGATGAAAA
66 CTCGAGAAATCGATGTGTAACATCTAATACGTCAGGACACAACATATTGAATTCCCGATGAAAA
40263520 GTTTTATTCT
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
130 129 1.00
ACGTcount: A:0.38, C:0.17, G:0.12, T:0.33
Consensus pattern (130 bp):
TTAGGGCACAATTTCCTAAAATCCAAAACATTCAATATTTTTTTTATTTTTTTAAAAAAATCTGT
CTCGAGAAATCGATGTGTAACATCTAATACGTCAGGACACAACATATTGAATTCCCGATGAAAAC
Found at i:40264020 original size:31 final size:31
Alignment explanation
Indices: 40263985--40264044 Score: 88
Period size: 31 Copynumber: 1.9 Consensus size: 31
40263975 AATTTATAAC
40263985 AAAATATATAACGTAT-T-TATGAAAATAAAGA
1 AAAATATATAA-GTATATATAT-AAAATAAAGA
40264016 AAAATATATAAGTATATATATAAAATAAA
1 AAAATATATAAGTATATATATAAAATAAA
40264045 ATATGTGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
30 4 0.15
31 20 0.74
32 3 0.11
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.30
Consensus pattern (31 bp):
AAAATATATAAGTATATATATAAAATAAAGA
Found at i:40264194 original size:29 final size:29
Alignment explanation
Indices: 40264157--40264222 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
40264147 TATACATGTA
*
40264157 AAATATATCAAAAATAATTAAATAATATAT
1 AAATATATCAAAAATAATTAAA-AATAAAT
*
40264187 AAAT-TATCAAAATTAATTAAAAATAAAT
1 AAATATATCAAAAATAATTAAAAATAAAT
40264215 AAATATAT
1 AAATATAT
40264223 GTACATACAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 10 0.30
29 19 0.58
30 4 0.12
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (29 bp):
AAATATATCAAAAATAATTAAAAATAAAT
Found at i:40266615 original size:44 final size:44
Alignment explanation
Indices: 40266094--40266918 Score: 694
Period size: 44 Copynumber: 18.7 Consensus size: 44
40266084 TCAGTTTGCC
** * * * *
40266094 TCACTACCAATATAAAAAGACAAGATCTGCTATCTTTGATTTATT
1 TCAC-ACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* * * * *
40266139 TCACGCCAATACATGAAGATAAGATCTGTTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* * * * * *
40266183 TCGCCACCAGTATGGGAAGACCAGATCTGCATT-TTCGATCCACT
1 TC-ACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* * *
40266227 TC-CTACCAATATAGGAAGATAGGATCTG-TTATCTTCGATCTATT
1 TCAC-ACCAATATAGGAAGACAAGATCTGCTT-TCTTCGATCTACT
* * * *
40266271 TCACGCCAATACATGAAGATAAGATCTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* * * * *
40266315 TCGCCACCAGTATAGGAAGATAAGATATGCTTTCTTCGATCTACC
1 TC-ACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* * *
40266360 TCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCTACT
1 TC-ACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* **
40266404 TC-CTTCCAATATAGGAAGAC-AGAATCTGGAATT-TTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAAG-ATCT-GCTTTCTTCGATCTACT
* * *
40266448 TCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* * *
40266492 TCACCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACT
1 TCA-CACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* *
40266536 TC-CTACCAATATAGGAAGACAGGATATG-TTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAAGATCTGCTT-TCTTCGATCTACT
* * *
40266580 TCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* * * *
40266624 TGGC-CACTAGTATGGGAAGACAAGATCTGC-ATCTTCGATCTACT
1 T--CACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* * *
40266668 TCGTCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCTACT
1 TC-ACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* * *
40266712 TC-CTACCAATATAAGAAGACAGGAACTG-TTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAAGATCTGCTT-TCTTCGATCTACT
* * * * * *
40266756 TCACGCCAATACATGAAGAAAATATCTACTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* * ** * *
40266800 TCGCCACCAGTACGGGAAGACAAGATCTGC-ATCTTCGATCCACT
1 TC-ACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
* * *
40266844 TCGCTACCAATATAGGAAGACAGGATCTGCTATCTTC-AGTCTACT
1 TCAC-ACCAATATAGGAAGACAAGATCTGCTTTCTTCGA-TCTACT
* *
40266889 TCACGCCAATATATGAAGACAAGATCTGCT
1 TCACACCAATATAGGAAGACAAGATCTGCT
40266919 GCTTTTTATC
Statistics
Matches: 633, Mismatches: 114, Indels: 67
0.78 0.14 0.08
Matches are distributed among these distances:
42 8 0.01
43 83 0.13
44 368 0.58
45 173 0.27
46 1 0.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (44 bp):
TCACACCAATATAGGAAGACAAGATCTGCTTTCTTCGATCTACT
Found at i:40266855 original size:309 final size:308
Alignment explanation
Indices: 40266097--40266918 Score: 1270
Period size: 309 Copynumber: 2.7 Consensus size: 308
40266087 GTTTGCCTCA
* * * * * *
40266097 CTACCAATATAAAAAGACAAGATCTGCTATCTTTGATTTATTTCACGCCAATACATGAAGATAAG
1 CTACCAATATAAGAAGAC-AGAACTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAAAAG
* * *
40266162 ATCTGTTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACCAGATCTGCATTTTCGATCCACT
65 ATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACT
* * *
40266227 TCCTACCAATATAGGAAGATAGGATCTGTTATCTTCGATCTATTTCACGCCAATACATGAAGATA
130 TCCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACA
* *
40266292 AGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATAGGAAGATAAGATATGCTTTCTTCGATCT
195 AGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATAGGAAGACAAGATATGCTATCTTCGATCT
40266357 ACCTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACTTC
260 ACCTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACTTC
* * ** * *
40266406 CTTCCAATATAGGAAGACAGAATCTGGAATTTTCGATCTACTTCACGCCAATACATGAAGACAAG
1 CTACCAATATAAGAAGACAGAA-CTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAAAAG
* *
40266471 ATCTGCTTTCTTCGATCTACTTCACCACCAATATGGGAAGACAAGATCTGCATCTTCGATCCACT
65 ATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACT
*
40266536 TCCTACCAATATAGGAAGACAGGATATGTTATCTTCGATCTACTTCACGCCAATACATGAAGACA
130 TCCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACA
* * * *
40266601 AGATCTGCTTTCTTCGATCTACTTGGCCACTAGTATGGGAAGACAAGATCTGC-ATCTTCGATCT
195 AGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATAGGAAGACAAGATATGCTATCTTCGATCT
* *
40266665 ACTTCGTCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACTTC
260 ACCTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACTTC
* *
40266714 CTACCAATATAAGAAGACAGGAACTGTTATCTTCGATCTACTTCACGCCAATACATGAAGAAAAT
1 CTACCAATATAAGAAGACA-GAACTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAAAAG
* *
40266779 ATCTACTTTCTTCGATCTACTTCGCCACCAGTACGGGAAGACAAGATCTGCATCTTCGATCCACT
65 ATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACT
* *
40266844 TCGCTACCAATATAGGAAGACAGGATCTGCTATCTTC-AGTCTACTTCACGCCAATATATGAAGA
130 TC-CTACCAATATAGGAAGACAGGATCTGTTATCTTCGA-TCTACTTCACGCCAATACATGAAGA
40266908 CAAGATCTGCT
193 CAAGATCTGCT
40266919 GCTTTTTATC
Statistics
Matches: 467, Mismatches: 42, Indels: 8
0.90 0.08 0.02
Matches are distributed among these distances:
308 178 0.38
309 289 0.62
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (308 bp):
CTACCAATATAAGAAGACAGAACTGCTATCTTCGATCTACTTCACGCCAATACATGAAGAAAAGA
TCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTGCATCTTCGATCCACTT
CCTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACTTCACGCCAATACATGAAGACAA
GATCTGCTTTCTTCGATCTACTTCGCCACCAGTATAGGAAGACAAGATATGCTATCTTCGATCTA
CCTCGCCACCAATATGGGAAGACAAGATCTGCATCTTCGATCTACTTC
Found at i:40278944 original size:19 final size:19
Alignment explanation
Indices: 40278914--40278950 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
40278904 TAAATTAATA
40278914 AAAAAATGAAAGAACTAAAT
1 AAAAAATGAAAGAA-TAAAT
40278934 AAAAAAT-AAAGAATAAA
1 AAAAAATGAAAGAATAAA
40278951 AGGTACATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 6 0.35
20 7 0.41
ACGTcount: A:0.76, C:0.03, G:0.08, T:0.14
Consensus pattern (19 bp):
AAAAAATGAAAGAATAAAT
Found at i:40279240 original size:29 final size:29
Alignment explanation
Indices: 40279207--40279262 Score: 69
Period size: 29 Copynumber: 1.9 Consensus size: 29
40279197 ATATGTATAC
40279207 ATGTA-AAATATATAAAAAATAATTAAATA
1 ATGTATAAAT-TATAAAAAATAATTAAATA
* * *
40279236 ATGTATACATTATCAAAATTAATTAAA
1 ATGTATAAATTATAAAAAATAATTAAA
40279263 AAATAAATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
29 20 0.87
30 3 0.13
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.34
Consensus pattern (29 bp):
ATGTATAAATTATAAAAAATAATTAAATA
Found at i:40284391 original size:16 final size:17
Alignment explanation
Indices: 40284367--40284400 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
40284357 ATAAGATTAA
40284367 ATATCGATTT-AATGTT
1 ATATCGATTTAAATGTT
*
40284383 ATATTGATTTAAATGTT
1 ATATCGATTTAAATGTT
40284400 A
1 A
40284401 ATATGTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.35, C:0.03, G:0.12, T:0.50
Consensus pattern (17 bp):
ATATCGATTTAAATGTT
Found at i:40284783 original size:27 final size:27
Alignment explanation
Indices: 40284750--40284806 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
40284740 AAGGAAAGGA
40284750 ATGGTAAATGTTCAAATGAACTATGTC
1 ATGGTAAATGTTCAAATGAACTATGTC
* *
40284777 ATGGTAAGTTTTCAAATGAACTATGTC
1 ATGGTAAATGTTCAAATGAACTATGTC
40284804 ATG
1 ATG
40284807 AAGCTCTGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.35, C:0.11, G:0.19, T:0.35
Consensus pattern (27 bp):
ATGGTAAATGTTCAAATGAACTATGTC
Found at i:40288448 original size:13 final size:14
Alignment explanation
Indices: 40288432--40288461 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
40288422 AAAGCAATTG
40288432 AAAAA-GCATAACA
1 AAAAATGCATAACA
40288445 AAAAATGCATAACA
1 AAAAATGCATAACA
40288459 AAA
1 AAA
40288462 TAAAATATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.70, C:0.13, G:0.07, T:0.10
Consensus pattern (14 bp):
AAAAATGCATAACA
Found at i:40288501 original size:32 final size:30
Alignment explanation
Indices: 40288452--40288534 Score: 91
Period size: 32 Copynumber: 2.8 Consensus size: 30
40288442 ACAAAAAATG
* *
40288452 CATAACAAAATAAAATATATAAATCGAAAA
1 CATAAAAAAATAAAATATATAAATCCAAAA
40288482 CATAAAAAATATATAAATATATAAATCCAAAA
1 CATAAAAAA-ATA-AAATATATAAATCCAAAA
*
40288514 -AAAATAAAAAT-AAATA-ATAAA
1 CATAA-AAAAATAAAATATATAAA
40288535 AATAAAAATA
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
28 5 0.11
29 5 0.11
30 8 0.17
31 8 0.17
32 21 0.45
ACGTcount: A:0.70, C:0.07, G:0.01, T:0.22
Consensus pattern (30 bp):
CATAAAAAAATAAAATATATAAATCCAAAA
Found at i:40288524 original size:6 final size:6
Alignment explanation
Indices: 40288513--40288544 Score: 55
Period size: 6 Copynumber: 5.2 Consensus size: 6
40288503 TAAATCCAAA
40288513 AAAAAT AAAAAT AAATAAT AAAAAT AAAAAT A
1 AAAAAT AAAAAT AAA-AAT AAAAAT AAAAAT A
40288545 TGGTTGGAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 19 0.76
7 6 0.24
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AAAAAT
Found at i:40288534 original size:13 final size:12
Alignment explanation
Indices: 40288513--40288544 Score: 55
Period size: 13 Copynumber: 2.6 Consensus size: 12
40288503 TAAATCCAAA
40288513 AAAAATAAAAAT
1 AAAAATAAAAAT
40288525 AAATAATAAAAAT
1 AAA-AATAAAAAT
40288538 AAAAATA
1 AAAAATA
40288545 TGGTTGGAGT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (12 bp):
AAAAATAAAAAT
Found at i:40288900 original size:37 final size:36
Alignment explanation
Indices: 40288854--40288933 Score: 99
Period size: 36 Copynumber: 2.2 Consensus size: 36
40288844 AATTCATATT
* * *
40288854 CCCC-AAGCCCAAATATTTTTACTTTACCCTATTTCC
1 CCCCAAAGCCCAAA-ACTTTTACGTCACCCTATTTCC
*
40288890 CCCCAAAGCCCAAACCTTTTACGTCACCCTATTTCC
1 CCCCAAAGCCCAAAACTTTTACGTCACCCTATTTCC
*
40288926 CCCTAAAG
1 CCCCAAAG
40288934 GCCACCTGCC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
36 29 0.76
37 9 0.24
ACGTcount: A:0.26, C:0.40, G:0.05, T:0.29
Consensus pattern (36 bp):
CCCCAAAGCCCAAAACTTTTACGTCACCCTATTTCC
Found at i:40296605 original size:7 final size:7
Alignment explanation
Indices: 40296556--40296580 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
40296546 TAAAAATAAT
40296556 AATTGAG
1 AATTGAG
40296563 AATTGAG
1 AATTGAG
40296570 AATTGAG
1 AATTGAG
40296577 AATT
1 AATT
40296581 TAAGATTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (7 bp):
AATTGAG
Found at i:40311652 original size:25 final size:25
Alignment explanation
Indices: 40311594--40311642 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
40311584 ATTGGTAATC
40311594 TCATACGAGCTAAATAACGGTAAGT
1 TCATACGAGCTAAATAACGGTAAGT
* *
40311619 TCATACGAGCTGAATATCGGTAAG
1 TCATACGAGCTAAATAACGGTAAG
40311643 CTCTCTCGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.37, C:0.16, G:0.22, T:0.24
Consensus pattern (25 bp):
TCATACGAGCTAAATAACGGTAAGT
Found at i:40315838 original size:12 final size:12
Alignment explanation
Indices: 40315821--40315846 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
40315811 GGTATAAGCA
40315821 ATCGTGGAGGAT
1 ATCGTGGAGGAT
40315833 ATCGTGGAGGAT
1 ATCGTGGAGGAT
40315845 AT
1 AT
40315847 AGAGGTGGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.08, G:0.38, T:0.27
Consensus pattern (12 bp):
ATCGTGGAGGAT
Found at i:40322795 original size:20 final size:20
Alignment explanation
Indices: 40322770--40322809 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
40322760 TGTAAAATGA
*
40322770 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
40322790 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
40322810 AGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:40322803 original size:34 final size:35
Alignment explanation
Indices: 40322755--40322821 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
40322745 CAGTAAAATA
* * *
40322755 TTTTTTGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCTGTAAAATGATTTACTAGAAAATATTTTAC
40322789 TTTTCTGTAAAATGATTTACTAGAAAATATTTT
1 TTTTCTGTAAAATGATTTACTAGAAAATATTTT
40322822 CTGCTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.33, C:0.06, G:0.12, T:0.49
Consensus pattern (35 bp):
TTTTCTGTAAAATGATTTACTAGAAAATATTTTAC
Found at i:40325255 original size:13 final size:13
Alignment explanation
Indices: 40325237--40325262 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
40325227 CATATTCCCA
40325237 TAATTTTATGTAT
1 TAATTTTATGTAT
40325250 TAATTTTATGTAT
1 TAATTTTATGTAT
40325263 ATACATACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TAATTTTATGTAT
Found at i:40325500 original size:21 final size:18
Alignment explanation
Indices: 40325469--40325508 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 18
40325459 TTGTTTTAGT
40325469 TCATTTTTTATTCATATTA
1 TCATTTTTTATTC-TATTA
40325488 TCATGTTTATTATTCTATTA
1 TCAT-TTT-TTATTCTATTA
40325508 T
1 T
40325509 GCATATAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 4 0.21
20 9 0.47
21 6 0.32
ACGTcount: A:0.25, C:0.10, G:0.03, T:0.62
Consensus pattern (18 bp):
TCATTTTTTATTCTATTA
Found at i:40325752 original size:110 final size:109
Alignment explanation
Indices: 40325554--40325864 Score: 385
Period size: 110 Copynumber: 2.9 Consensus size: 109
40325544 TTTCTAATTG
* * * *
40325554 AGGCAATATTTAGCGTTTGGGAAATTCGAGAAAACATGCCCTAAGGTGCTGGGTGTCGATTTTTC
1 AGGCAATGTTTTGCGTTT-GGAAATTAGAGAAAACATGCCCAAAGGTGCTGGGTGTCGATTTTTC
* * * *
40325619 TCGTTCAACCAAATGGCTTAATATCCTTTTAAAATTTTTTAAAATA
65 TCATTCAACCAAATGGCTAAATATCCTTTTAAAA-ATTCTAAAATA
*
40325665 AGGCAATGTTTTGCGTTTGGAAATTAGAGAAAACATGTCCAAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTAGAGAAAACATGCCCAAAGGTGCTGGGTGTCGATTTTTCT
*
40325730 CATTCAACCAAATGGCTAAATATCCTTTTAAAAATTCTCAAATA
66 CATTCAACCAAATGGCTAAATATCCTTTTAAAAATTCTAAAATA
* * * * * * *
40325774 AGGCAATGTTTTGCGTTTGGAAATTCGAG-GAACGTGCCCTAATGTGTTGGGTTTCGA--TTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTAGAGAAAACATGCCCAAAGGTGCTGGGTGTCGATTTTTCT
* * * * *
40325836 CGTTTAACCAAATAGCCATATATCCTTTT
66 CATTCAACCAAATGGCTAAATATCCTTTT
40325865 GAATTTCAAT
Statistics
Matches: 177, Mismatches: 23, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
106 29 0.16
108 21 0.12
109 36 0.20
110 75 0.42
111 16 0.09
ACGTcount: A:0.29, C:0.16, G:0.20, T:0.35
Consensus pattern (109 bp):
AGGCAATGTTTTGCGTTTGGAAATTAGAGAAAACATGCCCAAAGGTGCTGGGTGTCGATTTTTCT
CATTCAACCAAATGGCTAAATATCCTTTTAAAAATTCTAAAATA
Found at i:40329941 original size:23 final size:24
Alignment explanation
Indices: 40329907--40329962 Score: 69
Period size: 24 Copynumber: 2.4 Consensus size: 24
40329897 AAAATAAAAA
*
40329907 AAAAGAAGAAAA-AAATCAAAGTC
1 AAAAGAAAAAAATAAATCAAAGTC
* *
40329930 AAAAGAAAAAAATCAATCAAAGTT
1 AAAAGAAAAAAATAAATCAAAGTC
*
40329954 AAAATAAAA
1 AAAAGAAAA
40329963 TATGAAAAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
23 11 0.39
24 17 0.61
ACGTcount: A:0.71, C:0.07, G:0.09, T:0.12
Consensus pattern (24 bp):
AAAAGAAAAAAATAAATCAAAGTC
Found at i:40330847 original size:13 final size:13
Alignment explanation
Indices: 40330829--40330854 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
40330819 AGTCGGGGAA
40330829 AAAAATGAAAATG
1 AAAAATGAAAATG
40330842 AAAAATGAAAATG
1 AAAAATGAAAATG
40330855 GAGAGGCTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.69, C:0.00, G:0.15, T:0.15
Consensus pattern (13 bp):
AAAAATGAAAATG
Found at i:40332190 original size:87 final size:87
Alignment explanation
Indices: 40332037--40332695 Score: 948
Period size: 87 Copynumber: 7.6 Consensus size: 87
40332027 ATATCAGTGA
* * *
40332037 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTCAAA-ATAGTAGATCTTG
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTT-AAAGATAGCAGATCTTG
* *
40332101 CCTTTCTGCATTGACAGCGAAGC
65 CCTTCCTGCATTAACAGCGAAGC
* * * *
40332124 AGGTC-AGAAACAAAGCATTGCCTCCATCAGTTGCAGTGGAGCTGGTTAAAGATAGCAGATCTTG
1 AGATCGA-AAACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGCAGATCTTG
40332188 CCTTCCTGCATTAACAGCGAAGC
65 CCTTCCTGCATTAACAGCGAAGC
*
40332211 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGCAGATCTTGT
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGCAGATCTTGC
* *
40332276 CTTCTTGCATTAACAGCGAAAC
66 CTTCCTGCATTAACAGCGAAGC
* *
40332298 ATATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGTAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGCAGATCTTGC
* * *
40332363 CTTTCTGTATTGACAGCGAAGC
66 CTTCCTGCATTAACAGCGAAGC
* * * * *
40332385 AGATC-AGAAATAAAGCCTTGCCTCCATCAGTTCCAGTAGAGCTGGTTAAAGATAGCAGATCTTG
1 AGATCGA-AAACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGCAGATCTTG
40332449 CCTTCCTGCATTAACAGCGAAGC
65 CCTTCCTGCATTAACAGCGAAGC
* * *
40332472 AGATCGAAAACAAAGCATTGCCTCCATCGGTTGTAATGGATCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGCAGATCTTGC
*
40332537 CTTCCTACATTAACAGCGAAGC
66 CTTCCTGCATTAACAGCGAAGC
*
40332559 AGATCGAAAACAAAGCCTTGCATCCATCGGTTGCAATGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGCAGATCTTGC
*
40332624 CTTCCTGCGTTAACAGCGAAGC
66 CTTCCTGCATTAACAGCGAAGC
* * * * * *
40332646 AGATC-AAGAACAAAGTCTTGCCTCTATCGATTACAGTGGAGCGGGTTAAA
1 AGATCGAA-AACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAA
40332696 ATAAAAGATC
Statistics
Matches: 514, Mismatches: 52, Indels: 12
0.89 0.09 0.02
Matches are distributed among these distances:
86 7 0.01
87 505 0.98
88 2 0.00
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.25
Consensus pattern (87 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGCAGATCTTGC
CTTCCTGCATTAACAGCGAAGC
Found at i:40332503 original size:261 final size:261
Alignment explanation
Indices: 40332037--40332695 Score: 1045
Period size: 261 Copynumber: 2.5 Consensus size: 261
40332027 ATATCAGTGA
* *
40332037 AGATCGAAAACAAAGCCTTGCCTCCATCAGTTGCAGTGGAGCTGGTTCAAA-ATAGTAGATCTTG
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTT-AAAGATAGTAGATCTTG
* * *
40332101 CCTTTCTGCATTGACAGCGAAGCAGGTCAGAAACAAAGCATTGCCTCCATCAGTTGCAGTGGAGC
65 CCTTTCTGCATTGACAGCGAAGCAGATCAGAAACAAAGCCTTGCCTCCATCAGTTACAGTGGAGC
*
40332166 TGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCCTTG
130 TGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCATTG
* * *
40332231 CCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGCAGATCTTGTCTTCTTGCATTAACAGCGAA
195 CCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTACATTAACAGCGAA
40332296 AC
260 AC
*
40332298 ATATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGTAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGTAGATCTTGC
* * * *
40332363 CTTTCTGTATTGACAGCGAAGCAGATCAGAAATAAAGCCTTGCCTCCATCAGTTCCAGTAGAGCT
66 CTTTCTGCATTGACAGCGAAGCAGATCAGAAACAAAGCCTTGCCTCCATCAGTTACAGTGGAGCT
40332428 GGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCATTGC
131 GGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCATTGC
* * *
40332493 CTCCATCGGTTGTAATGGATCTGGTTAAAGATAGCAGATCTTGCCTTCCTACATTAACAGCGAAG
196 CTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTACATTAACAGCGAAA
40332558 C
261 C
* *
40332559 AGATCGAAAACAAAGCCTTGCATCCATCGGTTGCAATGGAGCTGGTTAAAGATAGCAGATCTTGC
1 AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGTAGATCTTGC
* * * * *
40332624 CTTCCTGCGTTAACAGCGAAGCAGATCA-AGAACAAAGTCTTGCCTCTATC-GATTACAGTGGAG
66 CTTTCTGCATTGACAGCGAAGCAGATCAGA-AACAAAGCCTTGCCTCCATCAG-TTACAGTGGAG
*
40332687 CGGGTTAAA
129 CTGGTTAAA
40332696 ATAAAAGATC
Statistics
Matches: 366, Mismatches: 29, Indels: 6
0.91 0.07 0.01
Matches are distributed among these distances:
260 5 0.01
261 361 0.99
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.25
Consensus pattern (261 bp):
AGATCGAAAACAAAGCCTTGCCTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGTAGATCTTGC
CTTTCTGCATTGACAGCGAAGCAGATCAGAAACAAAGCCTTGCCTCCATCAGTTACAGTGGAGCT
GGTTAAAGATAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCATTGC
CTCCATCGGTTGCAATGGAGCTGGTTAAAGATAGCAGATCTTGCCTTCCTACATTAACAGCGAAA
C
Found at i:40332809 original size:44 final size:44
Alignment explanation
Indices: 40332741--40333001 Score: 215
Period size: 44 Copynumber: 5.7 Consensus size: 44
40332731 TAGATCGCAT
40332741 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
* * * *
40332785 CAGATTGAAGCTAGTAATCCTATCTCCCTAAGATTACAGTGGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
* * ** * *
40332829 CGGGTT-AAAATAAAAGATCTTATCTCTCTGA-AGTTACAGCAGAGTAG
1 CAGATTGAAGCTAGAA-ATCTTATCTCCCTGAGA-TTACAGC-G-G-AG
*
40332876 ATCACATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAG
1 -------CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
* * *
40332927 CAGATTGAAGCTAGTAATCCTATCTCCCTGAGATTACAGTGGAG
1 CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
* * *
40332971 CGGATTAAAG-TA-ATAGATCTTATCTCTCTGA
1 CAGATTGAAGCTAGA-A-ATCTTATCTCCCTGA
40333002 AGTTGCAGTA
Statistics
Matches: 171, Mismatches: 30, Indels: 32
0.73 0.13 0.14
Matches are distributed among these distances:
43 9 0.05
44 123 0.72
45 1 0.01
46 1 0.01
47 2 0.01
51 2 0.01
52 1 0.01
53 1 0.01
54 25 0.15
55 6 0.04
ACGTcount: A:0.33, C:0.20, G:0.21, T:0.27
Consensus pattern (44 bp):
CAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAG
Found at i:40332842 original size:142 final size:142
Alignment explanation
Indices: 40332674--40333028 Score: 629
Period size: 142 Copynumber: 2.5 Consensus size: 142
40332664 TGCCTCTATC
*
40332674 GATTACAGTGGAGCGGGTTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCGC
1 GATTACAGTGGAGCGGGTTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCAC
*
40332739 ATCAGATTGAAGCTAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATC
66 ATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATC
40332804 CTATCTCCCTAA
131 CTATCTCCCTAA
40332816 GATTACAGTGGAGCGGGTTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCAC
1 GATTACAGTGGAGCGGGTTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCAC
40332881 ATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATC
66 ATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATC
*
40332946 CTATCTCCCTGA
131 CTATCTCCCTAA
* * * * * *
40332958 GATTACAGTGGAGCGGATTAAAGTAATAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCAC
1 GATTACAGTGGAGCGGGTTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCAC
40333023 ATCAGA
66 ATCAGA
40333029 CCTTATTCCC
Statistics
Matches: 204, Mismatches: 9, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
142 204 1.00
ACGTcount: A:0.33, C:0.19, G:0.22, T:0.26
Consensus pattern (142 bp):
GATTACAGTGGAGCGGGTTAAAATAAAAGATCTTATCTCTCTGAAGTTACAGCAGAGTAGATCAC
ATCAGATTGAAGCCAGAAATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATC
CTATCTCCCTAA
Found at i:40334995 original size:13 final size:13
Alignment explanation
Indices: 40334977--40335002 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
40334967 CTTATTCCCA
40334977 TAATTTTATGTAT
1 TAATTTTATGTAT
40334990 TAATTTTATGTAT
1 TAATTTTATGTAT
40335003 ATACATACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TAATTTTATGTAT
Found at i:40335225 original size:21 final size:19
Alignment explanation
Indices: 40335174--40335233 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 19
40335164 TGATTGATGT
*
40335174 ATTTTATTATTCGTTTTAGTTC
1 ATTTTATTATTC-TATTA--TC
40335196 ATTTT-TTATTCATATTATC
1 ATTTTATTATTC-TATTATC
40335215 ATGTTTATTATTCTATTAT
1 AT-TTTATTATTCTATTAT
40335234 GCATATAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
19 4 0.12
20 9 0.26
21 16 0.47
22 5 0.15
ACGTcount: A:0.23, C:0.08, G:0.05, T:0.63
Consensus pattern (19 bp):
ATTTTATTATTCTATTATC
Found at i:40352681 original size:11 final size:11
Alignment explanation
Indices: 40352665--40352714 Score: 91
Period size: 11 Copynumber: 4.5 Consensus size: 11
40352655 TAGCAATGCC
40352665 TATTTTAATCA
1 TATTTTAATCA
*
40352676 TATTTTAATTA
1 TATTTTAATCA
40352687 TATTTTAATCA
1 TATTTTAATCA
40352698 TATTTTAATCA
1 TATTTTAATCA
40352709 TATTTT
1 TATTTT
40352715 TTAAATAATT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 37 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (11 bp):
TATTTTAATCA
Found at i:40355152 original size:3 final size:3
Alignment explanation
Indices: 40355144--40355183 Score: 80
Period size: 3 Copynumber: 13.3 Consensus size: 3
40355134 AAATAGAGAT
40355144 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
40355184 TTATTATTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:40359709 original size:20 final size:20
Alignment explanation
Indices: 40359672--40359714 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
40359662 CTTTTAAAGG
** *
40359672 ATAATATAATTTATTTAAAA
1 ATAATATAAAATAATTAAAA
*
40359692 ATAATATAAAATAATTAATA
1 ATAATATAAAATAATTAAAA
40359712 ATA
1 ATA
40359715 TTCTACTTGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (20 bp):
ATAATATAAAATAATTAAAA
Found at i:40361785 original size:22 final size:20
Alignment explanation
Indices: 40361751--40361791 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
40361741 AATTGTTGAT
*
40361751 AAATTGATGAATTAGGCTTG
1 AAATTGATGAATTAAGCTTG
40361771 AAATTGATAGAAATTAAGCTT
1 AAATTGAT-G-AATTAAGCTT
40361792 AGATTATGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 8 0.44
21 1 0.06
22 9 0.50
ACGTcount: A:0.41, C:0.05, G:0.20, T:0.34
Consensus pattern (20 bp):
AAATTGATGAATTAAGCTTG
Found at i:40363182 original size:42 final size:43
Alignment explanation
Indices: 40363082--40363258 Score: 239
Period size: 43 Copynumber: 4.1 Consensus size: 43
40363072 AGAAATAAAT
* * * *
40363082 GCCGCTATAGATCAGTACCTTTAGTGGTGCTTTTTCCACAAAC
1 GCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
* * * *
40363125 GCCGCTATAAATCAGGACCTTTAGTGGTGCTTTT-ACACAAAC
1 GCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
40363167 GCCGCTATAGCTCAGGACCTTTAGCGACGCTTTTCCCACAAAC
1 GCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
* *
40363210 GCCGCTATAGCTCAGGACCTTTAGCGGCGCTTTTCCCACAAGC
1 GCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
40363253 GCCGCT
1 GCCGCT
40363259 GTCTGCTTTC
Statistics
Matches: 122, Mismatches: 11, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
42 36 0.30
43 86 0.70
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (43 bp):
GCCGCTATAGATCAGGACCTTTAGCGGCGCTTTTCCCACAAAC
Found at i:40363225 original size:85 final size:86
Alignment explanation
Indices: 40363082--40363258 Score: 239
Period size: 85 Copynumber: 2.1 Consensus size: 86
40363072 AGAAATAAAT
* * ** *
40363082 GCCGCTATAGATCAGTACCTTTAGTGGTGCTTTTTCCACAAACGCCGCTATAAATCAGGACCTTT
1 GCCGCTATAGATCAGGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTATAAATCAGGACCTTT
* *
40363147 AGTGGTGCTTTT-ACACAAAC
66 AGCGGCGCTTTTCACACAAAC
* **
40363167 GCCGCTATAGCTCAGGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTATAGCTCAGGACCTTT
1 GCCGCTATAGATCAGGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTATAAATCAGGACCTTT
* *
40363232 AGCGGCGCTTTTCCCACAAGC
66 AGCGGCGCTTTTCACACAAAC
40363253 GCCGCT
1 GCCGCT
40363259 GTCTGCTTTC
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
85 67 0.85
86 12 0.15
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (86 bp):
GCCGCTATAGATCAGGACCTTTAGCGACGCTTTTCCCACAAACGCCGCTATAAATCAGGACCTTT
AGCGGCGCTTTTCACACAAAC
Found at i:40363737 original size:43 final size:43
Alignment explanation
Indices: 40363676--40363780 Score: 174
Period size: 43 Copynumber: 2.4 Consensus size: 43
40363666 CCATGGGTCC
* *
40363676 CGCTATAGATTAAGACCTTTAACGGTGCTTTTTCCACAAACGA
1 CGCTATAGATCAAGACCTTTAACGGCGCTTTTTCCACAAACGA
* *
40363719 CGCTATAGATCAAGACCTTTAGCGGCGCTTTTTCCACAAACGC
1 CGCTATAGATCAAGACCTTTAACGGCGCTTTTTCCACAAACGA
40363762 CGCTATAGATCAAGACCTT
1 CGCTATAGATCAAGACCTT
40363781 AGTATTAAAT
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.28
Consensus pattern (43 bp):
CGCTATAGATCAAGACCTTTAACGGCGCTTTTTCCACAAACGA
Found at i:40363818 original size:16 final size:16
Alignment explanation
Indices: 40363797--40363830 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
40363787 AAATATTAAA
*
40363797 TATTAAAATCAAACAT
1 TATTAAAATCAAAAAT
*
40363813 TATTAATATCAAAAAT
1 TATTAAAATCAAAAAT
40363829 TA
1 TA
40363831 ATTAGTATTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (16 bp):
TATTAAAATCAAAAAT
Found at i:40365031 original size:192 final size:191
Alignment explanation
Indices: 40364765--40365129 Score: 450
Period size: 192 Copynumber: 1.9 Consensus size: 191
40364755 AAAGGTCCCA
* * * * *
40364765 AACTTGGTCTATTATGTTCATTAACATCATAAAAAATCATTAATTACATCCTAATAACAATTTCA
1 AACTTAGTCTATTATATTCATTAACATCATAAAAAAACATCAATTACATCCTAATAACAATTCCA
* * * * * * * *
40364830 ACTCCAAAGTT-GACTAAAGAAGCTTTGCAGGATATGA-AAACACAAGTGCATTTCCATTCAAGT
66 ACCCCAAAGTTCAACTAAA-AAACATTCCAGGATA-CACAAACACAAATGCATTTCCATTAAAGT
** * *
40364893 AAATTGTTGTGTTGTAATCACAAAG-TTCAAATGAAAACCATGACTCGAACCCATAAAAAATTC
129 -AATAATAGTGTTGTAATCACAAAGCTCCAAATGAAAACCATGACTCGAACCCATAAAAAATTC
* *
40364956 AACTTAGTCTATTGTATTCATTAACATCA-ACATAAAAACATCAATTACTTCCTAATAACAATTC
1 AACTTAGTCTATTATATTCATTAACATCATA-A-AAAAACATCAATTACATCCTAATAACAATTC
* **
40365020 CAACCCCAAAGTTCAATTAAAAAACATTCCAGGATACACAAATGCAAATGCATTTCCATTAAAGT
64 CAACCCCAAAGTTCAACTAAAAAACATTCCAGGATACACAAACACAAATGCATTTCCATTAAAGT
*
40365085 AATAATAGTGTTTTAATCACAAAGCTCCAAATGAAAACCATGACT
129 AATAATAGTGTTGTAATCACAAAGCTCCAAATGAAAACCATGACT
40365130 TAAATCCATT
Statistics
Matches: 146, Mismatches: 23, Indels: 9
0.82 0.13 0.05
Matches are distributed among these distances:
190 1 0.01
191 48 0.33
192 92 0.63
193 5 0.03
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.29
Consensus pattern (191 bp):
AACTTAGTCTATTATATTCATTAACATCATAAAAAAACATCAATTACATCCTAATAACAATTCCA
ACCCCAAAGTTCAACTAAAAAACATTCCAGGATACACAAACACAAATGCATTTCCATTAAAGTAA
TAATAGTGTTGTAATCACAAAGCTCCAAATGAAAACCATGACTCGAACCCATAAAAAATTC
Found at i:40365682 original size:18 final size:18
Alignment explanation
Indices: 40365659--40365694 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
40365649 CTGCTGTTGA
40365659 AGATCTGGAACAAAATCC
1 AGATCTGGAACAAAATCC
40365677 AGATCTGGAACAAAATCC
1 AGATCTGGAACAAAATCC
40365695 GACGTAGCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.44, C:0.22, G:0.17, T:0.17
Consensus pattern (18 bp):
AGATCTGGAACAAAATCC
Found at i:40367295 original size:20 final size:20
Alignment explanation
Indices: 40367270--40367309 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
40367260 AAGTATGGTT
40367270 AGTTTAGCAGTTAGCAGTAA
1 AGTTTAGCAGTTAGCAGTAA
40367290 AGTTTAGCAGTTAGCAGTAA
1 AGTTTAGCAGTTAGCAGTAA
40367310 GTGCAGTCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.35, C:0.10, G:0.25, T:0.30
Consensus pattern (20 bp):
AGTTTAGCAGTTAGCAGTAA
Found at i:40367320 original size:20 final size:20
Alignment explanation
Indices: 40367275--40367322 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
40367265 TGGTTAGTTT
**
40367275 AGCAGTTAGCAGTAAAGTTT
1 AGCAGTTAGCAGTAAAGTGC
40367295 AGCAGTTAGCAGT-AAGTGC
1 AGCAGTTAGCAGTAAAGTGC
40367314 AGTCAGTTA
1 AG-CAGTTA
40367323 AACTGTTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 6 0.24
20 19 0.76
ACGTcount: A:0.33, C:0.12, G:0.27, T:0.27
Consensus pattern (20 bp):
AGCAGTTAGCAGTAAAGTGC
Found at i:40371798 original size:20 final size:20
Alignment explanation
Indices: 40371773--40371812 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
40371763 AAGTATGGTT
*
40371773 AGTTTAGTAGTTAGCAGTAA
1 AGTTTAGCAGTTAGCAGTAA
40371793 AGTTTAGCAGTTAGCAGTAA
1 AGTTTAGCAGTTAGCAGTAA
40371813 GTGCAGTCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.35, C:0.07, G:0.25, T:0.33
Consensus pattern (20 bp):
AGTTTAGCAGTTAGCAGTAA
Found at i:40371823 original size:20 final size:20
Alignment explanation
Indices: 40371781--40371825 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
40371771 TTAGTTTAGT
**
40371781 AGTTAGCAGTAAAGTTTAGC
1 AGTTAGCAGTAAAGTGCAGC
40371801 AGTTAGCAGT-AAGTGCAGTC
1 AGTTAGCAGTAAAGTGCAG-C
40371821 AGTTA
1 AGTTA
40371826 AACTGTTAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.33, C:0.11, G:0.27, T:0.29
Consensus pattern (20 bp):
AGTTAGCAGTAAAGTGCAGC
Found at i:40377089 original size:9 final size:9
Alignment explanation
Indices: 40377067--40377105 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
40377057 TATAAAATTT
*
40377067 ATTATTCGA
1 ATTATTTGA
*
40377076 GTTATTTGA
1 ATTATTTGA
40377085 ATTATTTGA
1 ATTATTTGA
*
40377094 GTTATTTGA
1 ATTATTTGA
40377103 ATT
1 ATT
40377106 GCAATATTCA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.28, C:0.03, G:0.15, T:0.54
Consensus pattern (9 bp):
ATTATTTGA
Found at i:40377090 original size:18 final size:18
Alignment explanation
Indices: 40377067--40377105 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
40377057 TATAAAATTT
40377067 ATTATTCGAGTTATTTGA
1 ATTATTCGAGTTATTTGA
*
40377085 ATTATTTGAGTTATTTGA
1 ATTATTCGAGTTATTTGA
40377103 ATT
1 ATT
40377106 GCAATATTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.28, C:0.03, G:0.15, T:0.54
Consensus pattern (18 bp):
ATTATTCGAGTTATTTGA
Found at i:40378605 original size:19 final size:19
Alignment explanation
Indices: 40378568--40378614 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
40378558 GTGATTTCAA
*
40378568 CTTTTATTTCTCTGCTTCT
1 CTTTTATTTCTCAGCTTCT
* *
40378587 CTTTTATTTTTCAGTTTCT
1 CTTTTATTTCTCAGCTTCT
40378606 -TTTGTATTT
1 CTTT-TATTT
40378615 ATTTCGACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 3 0.12
19 21 0.88
ACGTcount: A:0.09, C:0.17, G:0.06, T:0.68
Consensus pattern (19 bp):
CTTTTATTTCTCAGCTTCT
Found at i:40379370 original size:3 final size:3
Alignment explanation
Indices: 40379364--40379399 Score: 54
Period size: 3 Copynumber: 12.0 Consensus size: 3
40379354 CTTTTAATAA
* *
40379364 TAT TAT TAT TGT TAT TAT TAT TAT TAT CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
40379400 AATTGCCCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.31, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:40379435 original size:21 final size:20
Alignment explanation
Indices: 40379409--40379453 Score: 54
Period size: 21 Copynumber: 2.2 Consensus size: 20
40379399 TAATTGCCCT
* *
40379409 TATATATATACGTTTTTTATA
1 TATATACATACATTTTTT-TA
*
40379430 TATATACATATATTTTTTTA
1 TATATACATACATTTTTTTA
40379450 TATA
1 TATA
40379454 CTTACACACA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (20 bp):
TATATACATACATTTTTTTA
Found at i:40379449 original size:22 final size:23
Alignment explanation
Indices: 40379416--40379486 Score: 72
Period size: 24 Copynumber: 3.0 Consensus size: 23
40379406 CCTTATATAT
* *
40379416 ATACGTTTTTTATATATATACAT
1 ATACTTTTTTTATATATATACAC
*
40379439 ATA-TTTTTTTATATACTTACACAC
1 ATACTTTTTTTATATA--TATACAC
*
40379463 ATACTTTTTGTAATATATATACAC
1 ATACTTTTT-TTATATATATACAC
40379487 TTACATATTC
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
22 11 0.28
23 3 0.08
24 14 0.36
25 5 0.13
26 6 0.15
ACGTcount: A:0.35, C:0.13, G:0.03, T:0.49
Consensus pattern (23 bp):
ATACTTTTTTTATATATATACAC
Found at i:40379485 original size:26 final size:24
Alignment explanation
Indices: 40379426--40379495 Score: 61
Period size: 24 Copynumber: 2.8 Consensus size: 24
40379416 ATACGTTTTT
* * *
40379426 TATATATATACATATATTTTTTTA
1 TATATATACACACATATTTTTTAA
40379450 TATACT-TACACACATACTTTTTGTAA
1 TATA-TATACACACATA-TTTTT-TAA
40379476 TATATATACACTTACATATT
1 TATATATACAC--ACATATT
40379496 CTTCATTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
24 12 0.32
25 7 0.19
26 11 0.30
27 2 0.05
28 5 0.14
ACGTcount: A:0.37, C:0.13, G:0.01, T:0.49
Consensus pattern (24 bp):
TATATATACACACATATTTTTTAA
Found at i:40380198 original size:111 final size:111
Alignment explanation
Indices: 40379912--40380460 Score: 915
Period size: 110 Copynumber: 5.0 Consensus size: 111
40379902 TATCAAAAAT
* *
40379912 AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGTCCTAAGGTGCT
1 AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
40379977 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
66 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
*
40380023 AAAA-TTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
1 AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
*
40380087 GGTTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
66 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
* *
40380133 AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAGAACGTGCCCTAAAGTGCT
1 AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
*
40380198 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAA
66 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT-A
** *
40380245 AAAATTTTCGAAATAAGGCAATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
1 AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
*
40380310 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT-
66 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
* *
40380355 AAAATTTTTAAAATAAGGCAATGTTTTACGTTT-GAAAATTCGAGAAAACGTGCCCTAAGGTGCT
1 AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
* * * *
40380419 GGGTGTCGATTTTTCTCATTTAACCGAATAGCCAAATATCCT
66 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCT
40380461 CTTGAATTTC
Statistics
Matches: 412, Mismatches: 24, Indels: 6
0.93 0.05 0.01
Matches are distributed among these distances:
109 67 0.16
110 135 0.33
111 104 0.25
112 106 0.26
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (111 bp):
AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
Found at i:40380396 original size:221 final size:220
Alignment explanation
Indices: 40379911--40380460 Score: 940
Period size: 221 Copynumber: 2.5 Consensus size: 220
40379901 TTATCAAAAA
* *
40379911 TAAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGTCCTAAGGTGC
1 TAAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGC
40379976 TGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTTCAAATAAGGC
66 TGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTTCAAATAAGGC
* *
40380041 AATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGTTGTCGATTTTTCTCAT
131 AATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCTCAT
40380106 TCAACCAAATGGCTAAATATCCTTT
196 TCAACCAAATGGCTAAATATCCTTT
* *
40380131 TAAAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAGAACGTGCCCTAAAGTG
1 T-AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTG
*
40380196 CTGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTCGAAATAA
65 CTGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT-AAAAATTTTC-AAATAA
40380261 GGCAATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
128 GGCAATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
*
40380326 CGTTCAACCAAATGGCTAAATATCCTTT
193 CATTCAACCAAATGGCTAAATATCCTTT
* *
40380354 TAAAATTTTTAAAATAAGGCAATGTTTTACGTTT-GAAAATTCGAGAAAACGTGCCCTAAGGTGC
1 TAAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGC
* * * *
40380418 TGGGTGTCGATTTTTCTCATTTAACCGAATAGCCAAATATCCT
66 TGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCT
40380461 CTTGAATTTC
Statistics
Matches: 310, Mismatches: 17, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
220 1 0.00
221 170 0.55
222 42 0.14
223 97 0.31
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (220 bp):
TAAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGC
TGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTTCAAATAAGGC
AATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCTCAT
TCAACCAAATGGCTAAATATCCTTT
Found at i:40383811 original size:6 final size:6
Alignment explanation
Indices: 40383802--40383875 Score: 55
Period size: 6 Copynumber: 12.7 Consensus size: 6
40383792 AAGAAAAAGA
* * * * *
40383802 AAAATC AAAATC AAAGTC AAAATG AAAATG AAAATG AAAAT- GAAA--
1 AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC AAAATC
* *
40383847 AAAATC AAAAATC AAAATA AAAAAC AAAA
1 AAAATC -AAAATC AAAATC AAAATC AAAA
40383876 AAAAAGAGAA
Statistics
Matches: 57, Mismatches: 8, Indels: 6
0.80 0.11 0.08
Matches are distributed among these distances:
4 3 0.05
5 3 0.05
6 45 0.79
7 6 0.11
ACGTcount: A:0.72, C:0.08, G:0.07, T:0.14
Consensus pattern (6 bp):
AAAATC
Found at i:40383929 original size:51 final size:52
Alignment explanation
Indices: 40383847--40383947 Score: 127
Period size: 51 Copynumber: 2.0 Consensus size: 52
40383837 GAAAATGAAA
40383847 AAAATCAAAAATCAAAATAAAAAACAAAAAAA-AAGAGAAAGAA-GAAAAAATC
1 AAAATCAAAAATCAAAATAAAAAACAAAAAAAGAA-AG-AAGAATGAAAAAATC
* ** *
40383899 AAAATC-AAGATCAAAATAAAAATGAGAAAAAGAAAGAAGAATGAAAAAA
1 AAAATCAAAAATCAAAATAAAAAACAAAAAAAGAAAGAAGAATGAAAAAA
40383948 GAGAAATCTA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
50 5 0.12
51 30 0.70
52 8 0.19
ACGTcount: A:0.74, C:0.06, G:0.11, T:0.09
Consensus pattern (52 bp):
AAAATCAAAAATCAAAATAAAAAACAAAAAAAGAAAGAAGAATGAAAAAATC
Found at i:40384866 original size:10 final size:10
Alignment explanation
Indices: 40384851--40384888 Score: 67
Period size: 10 Copynumber: 3.7 Consensus size: 10
40384841 CTCTTTGAGT
40384851 AAAAAAAACA
1 AAAAAAAACA
40384861 AAAAAAAACA
1 AAAAAAAACA
40384871 ACAAAAAAACA
1 A-AAAAAAACA
40384882 AAAAAAA
1 AAAAAAA
40384889 TGAAAATGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
10 17 0.63
11 10 0.37
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAACA
Found at i:40384867 original size:11 final size:11
Alignment explanation
Indices: 40384851--40384888 Score: 60
Period size: 11 Copynumber: 3.5 Consensus size: 11
40384841 CTCTTTGAGT
40384851 AAAAAAAAC-A
1 AAAAAAAACAA
40384861 AAAAAAAACAA
1 AAAAAAAACAA
*
40384872 CAAAAAAACAA
1 AAAAAAAACAA
40384883 AAAAAA
1 AAAAAA
40384889 TGAAAATGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
10 9 0.36
11 16 0.64
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAACAA
Found at i:40384873 original size:13 final size:12
Alignment explanation
Indices: 40384851--40384888 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 12
40384841 CTCTTTGAGT
40384851 AAAAAAAACAAA
1 AAAAAAAACAAA
40384863 AAAAAACAACAAA
1 AAAAAA-AACAAA
40384876 AAAACAAAA-AAA
1 AAAA-AAAACAAA
40384888 A
1 A
40384889 TGAAAATGAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
12 10 0.42
13 12 0.50
14 2 0.08
ACGTcount: A:0.89, C:0.11, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAACAAA
Found at i:40384894 original size:7 final size:7
Alignment explanation
Indices: 40384884--40384917 Score: 61
Period size: 7 Copynumber: 5.0 Consensus size: 7
40384874 AAAAAACAAA
40384884 AAAAATG
1 AAAAATG
40384891 -AAAATG
1 AAAAATG
40384897 AAAAATG
1 AAAAATG
40384904 AAAAATG
1 AAAAATG
40384911 AAAAATG
1 AAAAATG
40384918 GAGAGGCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.23
7 20 0.77
ACGTcount: A:0.71, C:0.00, G:0.15, T:0.15
Consensus pattern (7 bp):
AAAAATG
Found at i:40385995 original size:17 final size:17
Alignment explanation
Indices: 40385973--40386010 Score: 60
Period size: 17 Copynumber: 2.2 Consensus size: 17
40385963 GATCATTCTT
40385973 AAAAAAATA-ATAAAATA
1 AAAAAAATATA-AAAATA
40385990 AAAAAAATATAAAAATA
1 AAAAAAATATAAAAATA
40386007 AAAA
1 AAAA
40386011 TTATGCATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 19 0.95
18 1 0.05
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (17 bp):
AAAAAAATATAAAAATA
Found at i:40386401 original size:100 final size:100
Alignment explanation
Indices: 40386208--40386389 Score: 251
Period size: 100 Copynumber: 1.8 Consensus size: 100
40386198 CTTTACTTCC
* *
40386208 CAGGCGGTGCAGTAAAAAAGATTAAAGCCACAACAGTGAATCTTGCCTCCCTGACATTGCGATTA
1 CAGGCGGTGCAGTAAAAAAGATTAAAACCACAACAGTGAATCTTGCCTCCCTGACATTACGATTA
**
40386273 AAAAGATTAAAGTTACAGCAGCGAATCTTACCTCT
66 AAAAGATTAAAGCCACAGCAGCGAATCTTACCTCT
** * * *
40386308 CAGGCGGTGCAGTGGAACAGATTAAAACCACATCGGTGAATCTTGCCTCCCCT-ACATTAC-AGT
1 CAGGCGGTGCAGTAAAAAAGATTAAAACCACAACAGTGAATCTTGCCT-CCCTGACATTACGA-T
40386371 TAAAAAGATTAAAGCCACA
64 TAAAAAGATTAAAGCCACA
40386390 TCGGTGAATC
Statistics
Matches: 71, Mismatches: 9, Indels: 4
0.85 0.11 0.05
Matches are distributed among these distances:
99 1 0.01
100 66 0.93
101 4 0.06
ACGTcount: A:0.36, C:0.23, G:0.19, T:0.22
Consensus pattern (100 bp):
CAGGCGGTGCAGTAAAAAAGATTAAAACCACAACAGTGAATCTTGCCTCCCTGACATTACGATTA
AAAAGATTAAAGCCACAGCAGCGAATCTTACCTCT
Found at i:40386423 original size:25 final size:25
Alignment explanation
Indices: 40386377--40386426 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
40386367 CAGTTAAAAA
* * *
40386377 GATTAAAGCCACATCGGTGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
*
40386402 GATTAAAGCTACAACAGCGAATCTT
1 GATTAAAGCCACAACAGCGAATCTT
40386427 ACTCCCCAAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (25 bp):
GATTAAAGCCACAACAGCGAATCTT
Found at i:40386549 original size:44 final size:43
Alignment explanation
Indices: 40386494--40387250 Score: 427
Period size: 44 Copynumber: 17.7 Consensus size: 43
40386484 CCCAAAATCC
*
40386494 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAA-CACAGATCT
* * * * * * *
40386538 TATCTCTCTGAAGTTGCAATAGAGTAGGTCACATC-CAG-TCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACACAGATCT
* ** * *
40386579 TATCTCCCTGAA-TTGCAGTGGAGCAGACGAAAGAAATCA-ATCC
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAA-ACA-CAGATCT
**
40386622 TATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAA-CACAGATCT
* * * * * *
40386666 TATCTCTCTAAAGTTGCTGTAGAGCAGA-TCACATACAG-TCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACACAGATCT
* ** * *
40386707 TATCTCCCTGAAGTTGCAGTGGAGCAGACGAAAGAAATCA-ATCC
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAA-ACA-CAGATCT
*
40386751 TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAA-CACAGATCT
* * * * * * *
40386795 TATCTCTCTGAAGTTGCAATAGAGCAGGTCACATC-C-GGTCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACACAGATCT
* * * * * *
40386836 TATTTCCCTGAAGTTACAGTGGAGCAGACAATAGAAA-TCA-ATCC
1 TATCTCTCTGAAGTTGCAGTGGAGCAG--ATTA-AAACACAGATCT
* ** * *
40386880 TATCTCCCTGAAGTTGCAAAGGAGCGGATTAAAACCCTAGATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACAC-AGATCT
* * * * * * *
40386924 TATCTCTCTAAAGTTGCAATAGAGCAGA-TCACATACAG-TTT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACACAGATCT
* * ** * *
40386965 TATCTCCCTGAAGTTGCAGTGGAGAAGACGAAAGAAATCA-ATCC
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAA-ACA-CAGATCT
* * * *
40387009 TATCTCTTTGAAGTTGCTGAGGAGCGGATTAAAATC-CTAGATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAA-CAC-AGATCT
* * * *
40387053 TATCTCTCTGAAGTTGCAGTAGAGCAGATCACATC-CAG-TCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACACAGATCT
* * * * * ** * ** *
40387094 TATCCCCCGGAAGTTGTAGTGGAGCAAACGAAAGAAATTGATCC
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAA-ACACAGATCT
* * *
40387138 TATCTCTCTAAAGTTACAGTGGAGCGGATTAAAACCACAGATCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAA-CACAGATCT
* * *** **
40387182 TATCTCTCTGAAGTTGTAGTAGAGCAGA-TCGCATTCAG-TCT
1 TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACACAGATCT
* *
40387223 TATCTCCCAGAAGTTGCAGTGGAGCAGA
1 TATCTCTCTGAAGTTGCAGTGGAGCAGA
40387251 CGAAAAAAAT
Statistics
Matches: 525, Mismatches: 156, Indels: 67
0.70 0.21 0.09
Matches are distributed among these distances:
40 13 0.02
41 149 0.28
42 22 0.04
43 44 0.08
44 297 0.57
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (43 bp):
TATCTCTCTGAAGTTGCAGTGGAGCAGATTAAAACACAGATCT
Found at i:40386723 original size:85 final size:85
Alignment explanation
Indices: 40386622--40387247 Score: 323
Period size: 85 Copynumber: 7.3 Consensus size: 85
40386612 AAATCAATCC
* * *
40386622 TATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGCTGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCTGTA
*
40386687 GAGCAGATCACATACAGTCT
66 GAGCAGATCAAATACAGTCT
* ** * * * *
40386707 TATCTCCCTGAAGTTGCAGTGGAGCAGACGAAAGA-AATCA-ATCCTATCTCCCTGAAGTTGCAG
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAA-ACCA-CAGATCTTATCTCTCTGAAGTTGCTG
* * *
40386770 TGGAGCAGATTAAAACCACAGATCT
64 TAGAGCAGA-TCAAA-TACAG-TCT
* * * * * * * * * * *
40386795 TATCTCTCTGAAGTTGCAATAGAGCAGG--TCACATC-C-GGTCTTATTTCCCTGAAGTTACAGT
1 TATCTCCCTGAAGTTGCAGTGGAGC-GGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCTGT
* * * *
40386856 GGAGCAGA-CAATAGAAATCAATCC
65 AGAGCAGATC-A-A-ATA-CAGTCT
** * **
40386880 TATCTCCCTGAAGTTGCAAAGGAGCGGATTAAAACC-CTAGATCTTATCTCTCTAAAGTTGCAAT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCAC-AGATCTTATCTCTCTGAAGTTGCTGT
* *
40386944 AGAGCAGATCACATACAGTTT
65 AGAGCAGATCAAATACAGTCT
** ** * * *
40386965 TATCTCCCTGAAGTTGCAGTGGAGAAGACGAAAGA-AATCA-ATCCTATCTCTTTGAAGTTGCTG
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAA-ACCA-CAGATCTTATCTCTCTGAAGTTGCTG
* * *
40387028 -AGGAGCGGATTAAAATCCTAGATCT
64 TA-GAGCAGA-TCAAATAC-AG-TCT
* * * * * * * * *
40387053 TATCTCTCTGAAGTTGCAGTAGAGCAGA-TCACATC-CAG-TCTTATCCCCCGGAAGTTG-TAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCT-GT
* * * * *
40387114 GGAGCA-AACGAAAGAAATTGATCC
65 AGAGCAGATC-AAATACA--G-TCT
* * *
40387138 TATCTCTCTAAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG-TAGT
1 TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCT-GT
** *
40387202 AGAGCAGATCGCATTCAGTCT
65 AGAGCAGATCAAATACAGTCT
*
40387223 TATCTCCCAGAAGTTGCAGTGGAGC
1 TATCTCCCTGAAGTTGCAGTGGAGC
40387248 AGACGAAAAA
Statistics
Matches: 399, Mismatches: 107, Indels: 70
0.69 0.19 0.12
Matches are distributed among these distances:
83 1 0.00
84 9 0.02
85 237 0.59
86 30 0.08
87 12 0.03
88 106 0.27
89 4 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (85 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCTGTA
GAGCAGATCAAATACAGTCT
Found at i:40386785 original size:129 final size:129
Alignment explanation
Indices: 40386489--40387336 Score: 1164
Period size: 129 Copynumber: 6.6 Consensus size: 129
40386479 GAAGACCCAA
*
40386489 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
* *
40386554 CAATAGAGTAGGTCACATCCAGTCTTATCTCCCTGAA-TTGCAGTGGAGCAGACGAAAGAAATC
66 CAATAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAAGAAATC
* * *
40386617 AATCCTATCTCTCTGAAGTTGCAGTGGAGTGGATTAAAACCACAGATCTTATCTCTCTAAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
** *
40386682 CTGTAGAGCAGATCACATACAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAAGAAATC
66 CAATAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAAGAAATC
*
40386746 AATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
* * * *
40386811 CAATAGAGCAGGTCACATCCGGTCTTATTTCCCTGAAGTTACAGTGGAGCAGAC-AATAGAAATC
66 CAATAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAA-AGAAATC
** *
40386875 AATCCTATCTCCCTGAAGTTGCAAAGGAGCGGATTAAAACC-CTAGATCTTATCTCTCTAAAGTT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCAC-AGATCTTATCTCTCTGAAGTT
* * *
40386939 GCAATAGAGCAGATCACATACAGTTTTATCTCCCTGAAGTTGCAGTGGAGAAGACGAAAGAAATC
65 GCAATAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAAGAAATC
** * * *
40387004 AATCCTATCTCTTTGAAGTTGCTGAGGAGCGGATTAAAATCC-TAGATCTTATCTCTCTGAAGTT
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA-CCACAGATCTTATCTCTCTGAAGTT
* * * * * *
40387068 GCAGTAGAGCAGATCACATCCAGTCTTATCCCCCGGAAGTTGTAGTGGAGCAAACGAAAGAAATT
65 GCAATAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAAGAAATC
* * * *
40387133 GATCCTATCTCTCTAAAGTTACAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
* * * * * * *
40387198 TAGTAGAGCAGATCGCATTCAGTCTTATCTCCCAGAAGTTGCAGTGGAGCAGACGAAAAAAATT
66 CAATAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAAGAAATC
* * * ** ** * * *
40387262 AATCCTATCTTCCTGAAGTTGTAGTGAAGCGGATTAAAATGATGGATCCTATCTATCTGGAGTTG
1 AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
*
40387327 CAATATAGCA
66 CAATAGAGCA
40387337 TATTGCATCA
Statistics
Matches: 636, Mismatches: 78, Indels: 11
0.88 0.11 0.02
Matches are distributed among these distances:
128 98 0.15
129 534 0.84
130 4 0.01
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (129 bp):
AATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTG
CAATAGAGCAGATCACATCCAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACGAAAGAAATC
Found at i:40388321 original size:19 final size:19
Alignment explanation
Indices: 40388297--40388343 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
40388287 GTGATTTCAA
*
40388297 CTTTTATTTCTCTGTTTCT
1 CTTTTATTTCTCAGTTTCT
*
40388316 CTTTTATTTTTCAGTTTCT
1 CTTTTATTTCTCAGTTTCT
40388335 -TTTGTATTT
1 CTTT-TATTT
40388344 ATTTCGAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 3 0.12
19 22 0.88
ACGTcount: A:0.09, C:0.15, G:0.06, T:0.70
Consensus pattern (19 bp):
CTTTTATTTCTCAGTTTCT
Found at i:40389100 original size:3 final size:3
Alignment explanation
Indices: 40389094--40389138 Score: 63
Period size: 3 Copynumber: 15.0 Consensus size: 3
40389084 CTTTTAATAA
* * *
40389094 TAT TAT TAT TAT TGT TAT TAT TAT TAT TAA TAT TAT CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
40389139 AATTGCCCTT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:40389178 original size:24 final size:23
Alignment explanation
Indices: 40389151--40389223 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 23
40389141 TTGCCCTTAT
40389151 ATATACGTTTTTTTATATATATAC
1 ATATAC-TTTTTTTATATATATAC
*
40389175 ATATA-TTTTTTTATATACTTACAC
1 ATATACTTTTTTTATATA--TATAC
* *
40389199 ACATACTTTTTGTAATATATATAC
1 ATATACTTTTT-TTATATATATAC
40389223 A
1 A
40389224 CTTACATATT
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
22 12 0.29
24 18 0.44
25 5 0.12
26 6 0.15
ACGTcount: A:0.36, C:0.11, G:0.03, T:0.51
Consensus pattern (23 bp):
ATATACTTTTTTTATATATATAC
Found at i:40389223 original size:26 final size:24
Alignment explanation
Indices: 40389164--40389233 Score: 61
Period size: 24 Copynumber: 2.8 Consensus size: 24
40389154 TACGTTTTTT
* * *
40389164 TATATATATACATATATTTTTTTA
1 TATATATACACACATATTTTTTAA
40389188 TATACT-TACACACATACTTTTTGTAA
1 TATA-TATACACACATA-TTTTT-TAA
40389214 TATATATACACTTACATATT
1 TATATATACAC--ACATATT
40389234 CTTCATTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
24 12 0.32
25 7 0.19
26 11 0.30
27 2 0.05
28 5 0.14
ACGTcount: A:0.37, C:0.13, G:0.01, T:0.49
Consensus pattern (24 bp):
TATATATACACACATATTTTTTAA
Found at i:40389950 original size:111 final size:111
Alignment explanation
Indices: 40389653--40390201 Score: 906
Period size: 110 Copynumber: 5.0 Consensus size: 111
40389643 TATCAAAAAT
* *
40389653 AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGTCCTAAGGTGCT
1 AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
40389718 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
66 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
*
40389764 AAAA-TTTTCAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
1 AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
40389828 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
66 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
* *
40389874 AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAGAACGTGCCCTAAAGTGCT
1 AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
*
40389939 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAA
66 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT-A
** * * * *
40389986 AAAATTTTCGAAATAAAGAAATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCACTAAGGTGCT
1 AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
*
40390051 GGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTT-
66 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
*
40390096 AAAATTTTTAAAATAAGGCAATGTTTTGCGTTT-GAAAATTCGAGAAAACGTGCCCTAAGGTGCT
1 AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
* * * *
40390160 GGGTGTCGATTTTTCTCATTTAACCGAATAGCCAAATATCCT
66 GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCT
40390202 CTTGAATTTC
Statistics
Matches: 409, Mismatches: 27, Indels: 6
0.93 0.06 0.01
Matches are distributed among these distances:
109 66 0.16
110 135 0.33
111 105 0.26
112 103 0.25
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (111 bp):
AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCT
GGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTA
Found at i:40390137 original size:221 final size:220
Alignment explanation
Indices: 40389652--40390201 Score: 931
Period size: 221 Copynumber: 2.5 Consensus size: 220
40389642 TTATCAAAAA
* *
40389652 TAAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACATGTCCTAAGGTGC
1 TAAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGC
* *
40389717 TGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTTCAAATAAGGC
66 TGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTTCAAATAAAGA
* *
40389782 AATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCTCAT
131 AATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCACTAAGGTGCTGGGTGTCGATTTTTCTCAT
40389847 TCAACCAAATGGCTAAATATCCTTT
196 TCAACCAAATGGCTAAATATCCTTT
* *
40389872 TAAAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAGAACGTGCCCTAAAGTG
1 T-AAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTG
*
40389937 CTGGGTGTCGATTTTTCTCGTTCAACCAAATGGCTAAATATCCTTTTAAAAAATTTTCGAAATAA
65 CTGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTT-AAAAATTTTC-AAATAA
40390002 AGAAATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCACTAAGGTGCTGGGTGTCGATTTTTCT
128 AGAAATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCACTAAGGTGCTGGGTGTCGATTTTTCT
*
40390067 CGTTCAACCAAATGGCTAAATATCCTTT
193 CATTCAACCAAATGGCTAAATATCCTTT
*
40390095 TAAAATTTTTAAAATAAGGCAATGTTTTGCGTTT-GAAAATTCGAGAAAACGTGCCCTAAGGTGC
1 TAAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGC
* * * *
40390159 TGGGTGTCGATTTTTCTCATTTAACCGAATAGCCAAATATCCT
66 TGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCT
40390202 CTTGAATTTC
Statistics
Matches: 309, Mismatches: 18, Indels: 5
0.93 0.05 0.02
Matches are distributed among these distances:
220 1 0.00
221 170 0.55
222 43 0.14
223 95 0.31
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (220 bp):
TAAAATTTTTAAAATAAGGCAATGTTTTGCGTTTGGGAAATTCGAGAAAACGTGCCCTAAGGTGC
TGGGTGTCGATTTTTCTCATTCAACCAAATGGCTAAATATCCTTTTAAAAATTTTCAAATAAAGA
AATGTTTTGCATTTGGGAAATTCGAGAAAACGTGCACTAAGGTGCTGGGTGTCGATTTTTCTCAT
TCAACCAAATGGCTAAATATCCTTT
Found at i:40392065 original size:15 final size:15
Alignment explanation
Indices: 40392045--40392073 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
40392035 AAATTTATAA
40392045 GAAAAGAATAAAATC
1 GAAAAGAATAAAATC
40392060 GAAAAGAATAAAAT
1 GAAAAGAATAAAAT
40392074 TTAAAAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.69, C:0.03, G:0.14, T:0.14
Consensus pattern (15 bp):
GAAAAGAATAAAATC
Found at i:40392079 original size:15 final size:14
Alignment explanation
Indices: 40392046--40392096 Score: 52
Period size: 15 Copynumber: 3.6 Consensus size: 14
40392036 AATTTATAAG
**
40392046 AAAAGAATAAAATCG
1 AAAA-AATAAAATTT
40392061 AAAAGAATAAAATTT
1 AAAA-AATAAAATTT
40392076 AAAAAAT--AATTT
1 AAAAAATAAAATTT
40392088 AAAAAATAA
1 AAAAAATAA
40392097 TTGAGGATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
12 12 0.38
14 3 0.09
15 17 0.53
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.22
Consensus pattern (14 bp):
AAAAAATAAAATTT
Found at i:40392088 original size:12 final size:12
Alignment explanation
Indices: 40392071--40392098 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
40392061 AAAAGAATAA
40392071 AATTTAAAAAAT
1 AATTTAAAAAAT
40392083 AATTTAAAAAAT
1 AATTTAAAAAAT
40392095 AATT
1 AATT
40392099 GAGGATTGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AATTTAAAAAAT
Found at i:40392108 original size:7 final size:7
Alignment explanation
Indices: 40392096--40392129 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
40392086 TTAAAAAATA
*
40392096 ATTGAGG
1 ATTGAAG
*
40392103 ATTGAGG
1 ATTGAAG
40392110 ATTGAAG
1 ATTGAAG
40392117 ATTGAAG
1 ATTGAAG
40392124 ATTGAA
1 ATTGAA
40392130 AATTTAGGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.38, C:0.00, G:0.32, T:0.29
Consensus pattern (7 bp):
ATTGAAG
Found at i:40397063 original size:14 final size:15
Alignment explanation
Indices: 40397044--40397072 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
40397034 AAATTTTCTG
40397044 TAAAAA-TATAATTA
1 TAAAAATTATAATTA
40397058 TAAAAATTATAATTA
1 TAAAAATTATAATTA
40397073 ATTAAATTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
TAAAAATTATAATTA
Found at i:40401209 original size:17 final size:17
Alignment explanation
Indices: 40401187--40401228 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
40401177 GGCCTGAGGT
* *
40401187 GGCCCAAACCCAACTGA
1 GGCCCAAACCAAACAGA
40401204 GGCCCAAACCAAACAGA
1 GGCCCAAACCAAACAGA
*
40401221 AGCCCAAA
1 GGCCCAAA
40401229 GCAGATTTGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.43, C:0.38, G:0.17, T:0.02
Consensus pattern (17 bp):
GGCCCAAACCAAACAGA
Found at i:40402990 original size:98 final size:98
Alignment explanation
Indices: 40402870--40403066 Score: 322
Period size: 98 Copynumber: 2.0 Consensus size: 98
40402860 TAAAAAATAA
* * * *
40402870 TAAAGGAAATATTCCGAGTTTGGAATTTTAAAGAAATTGTGCCCTAACGGATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAATTTGGAATTCTAAAGAAATCGTGCCCTAACGGATTGGGTGTGATTTC
40402935 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* * * *
40402968 TAAAGGAAATATTTCAAATTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAATTTGGAATTCTAAAGAAATCGTGCCCTAACGGATTGGGTGTGATTTC
40403033 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
40403066 T
1 T
40403067 TTTATTGTAC
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
98 91 1.00
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.37
Consensus pattern (98 bp):
TAAAGGAAATATTCCAAATTTGGAATTCTAAAGAAATCGTGCCCTAACGGATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:40414517 original size:44 final size:43
Alignment explanation
Indices: 40414453--40415439 Score: 397
Period size: 44 Copynumber: 22.7 Consensus size: 43
40414443 AAATTGAGTT
*
40414453 TTATCTCCCTGAAGTTGCAGTTGAGCAGATTAAAGCCAATAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-ATAATC
* *
40414497 CTATCTCCCTGAAGTTGCAGTGGAGC-GAATTAAAACC-TCAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAG-ATTAAAGCCAT-A-ATC
* * *** * *
40414541 TTATCTCTCTGAAGTTGCAG-AGAGCAGATCGCA-TC-TAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCATAATC
* * * * *
40414581 ATATCTCCTTGAGGTTGCAGTGGAGCAGAATATGTAAG-CA-AGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAG-AT-T-AAAGCCATAATC
* *
40414625 TTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGATGTCA-AATC
1 TTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAA-A-GCCATAATC
*
40414670 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-ATAATC
* * * ** **
40414714 CTATCTCCCTAAAGTTACAGTGGAGTGGATTAAA-ATATCAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT-A-ATC
* * * * *** * *
40414758 TTATCTCTCTGAAGATGCAG-AGAGTAGATCGCA-TC-TAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCATAATC
* * *
40414798 TTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGCAAAGCAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC-CA-TAA-TC
* * * *
40414843 TTATC-CTCCTGAAGTTGGAGT-GAGGCAGACTGAAGGTGGCA-AATC
1 TTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAA--AGCCATAATC
* * **
40414888 TTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAGCCGGCAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-ATAATC
* * * *
40414932 CTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTTAGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCATA-ATC
* * * *** * *
40414976 TTATCTCTCTGAAGTTGCAG-AGAACAGATCGCATCC--AGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCATAATC
* * * * *
40415016 ATATCTCCCTGAGGTTGCAGTGGAGCCGAATACGTAAG-CA-AGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTA---AAGCCATAATC
* * *
40415060 TTATC-CTCCTGAAGTTACAGT-GAGGCAGACTGAAGATGGCA-AATC
1 TTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAA-A-GCCATAATC
* *
40415105 TTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-ATAATC
* * * * ** * *
40415149 CTATTTCCGTGAAGTTACAGTGGAGTGGATTAAAATCTCA-GATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGC-CATAATC
* * * * *** * *
40415193 TTATCTCTCTGAAGATGCAG-AGAGTAGATCGCA-TC-TAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCATAATC
* * * *
40415233 TTATCTCCCTGAGGTTGCAGTGGAGCAGACT-AAGCAAAGCAAGTC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGC-CA-TAA-TC
* * *
40415278 TTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGAAGGTGGCA-AATC
1 TTATCTC-CCTGAAGTTGCAGTGGA-GCAGA-TTAA--AGCCATAATC
* * * *
40415323 TTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAGTCGACAATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CCATAATC
* * * * *
40415367 CTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAACCTCTGATC
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-ATAATC
*
40415411 TTATC-CCTCTGAAGTTGTAGTGGAGCAGA
1 TTATCTCC-CTGAAGTTGCAGTGGAGCAGA
40415440 CTGGTGGATC
Statistics
Matches: 702, Mismatches: 166, Indels: 150
0.69 0.16 0.15
Matches are distributed among these distances:
40 79 0.11
41 26 0.04
42 17 0.02
43 53 0.08
44 342 0.49
45 162 0.23
46 17 0.02
47 2 0.00
48 2 0.00
49 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.27
Consensus pattern (43 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCATAATC
Found at i:40415164 original size:217 final size:218
Alignment explanation
Indices: 40414453--40415427 Score: 1522
Period size: 217 Copynumber: 4.5 Consensus size: 218
40414443 AAATTGAGTT
* * *
40414453 TTATCTCCCTGAAGTTGCAGTTGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGT
*
40414518 GGAGCGAATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCAT
66 GGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCAT
* * *
40414583 ATCTCCTTGAGGTTGCAGTGGAGCAGAATATG-TAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
131 ATCTCCCTGAGGTTGCAGTGGAGCAGAATAAGCAAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
*
40414647 AGGCAGACTGAAGATGTCAAATC
196 AGGCAGACTGAAGATGGCAAATC
* * *
40414670 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAATCCTATCTCCCTAAAGTTACAGT
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGT
* ** * * *
40414735 GGAGTGGATTAAAATATCAGATCTTATCTCTCTGAAGATGCAGAGAGTAGATCGCATCTAGTCTT
66 GGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCAT
* * *
40414800 ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTCTTATCCTCCTGAAGTTGGAGTG
131 ATCTCCCTGAGGTTGCAGTGGAGCAGAATAAGCAAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
*
40414865 AGGCAGACTGAAGGTGGCAAATC
196 AGGCAGACTGAAGATGGCAAATC
* *
40414888 TTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAGCCGGCAATCCTATCTCCCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGT
* * *
40414953 GGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAACAGATCGCATCCAGTCAT
66 GGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCAT
* * * *
40415018 ATCTCCCTGAGGTTGCAGTGGAGCCGAATACG-TAAGCAAGTCTTATCCTCCTGAAGTTACAGTG
131 ATCTCCCTGAGGTTGCAGTGGAGCAGAATAAGCAAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
40415082 AGGCAGACTGAAGATGGCAAATC
196 AGGCAGACTGAAGATGGCAAATC
* * * * *
40415105 TTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAATCCTATTTCCGTGAAGTTACAGT
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGT
* * * * *
40415170 GGAGTGGATTAAAATCTCAGATCTTATCTCTCTGAAGATGCAGAGAGTAGATCGCATCTAGTCTT
66 GGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCAT
*
40415235 ATCTCCCTGAGGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
131 ATCTCCCTGAGGTTGCAGTGGAGCAGAATAAGCAAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
*
40415300 AGGCAGACTGAAGGTGGCAAATC
196 AGGCAGACTGAAGATGGCAAATC
* *
40415323 TTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAGTCGACAATCCTATCTCCCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGT
* *
40415388 GGAGCGGATTAAAACCTCTGATCTTATCCCTCTGAAGTTG
66 GGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTG
40415428 TAGTGGAGCA
Statistics
Matches: 681, Mismatches: 75, Indels: 3
0.90 0.10 0.00
Matches are distributed among these distances:
217 341 0.50
218 340 0.50
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (218 bp):
TTATCTCCCTGAAGTTGCAGTAGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGT
GGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCAT
ATCTCCCTGAGGTTGCAGTGGAGCAGAATAAGCAAAGCAAGTCTTATCCTCCTGAAGTTGCAGTG
AGGCAGACTGAAGATGGCAAATC
Found at i:40415263 original size:435 final size:435
Alignment explanation
Indices: 40414453--40415427 Score: 1727
Period size: 435 Copynumber: 2.2 Consensus size: 435
40414443 AAATTGAGTT
* * * *
40414453 TTATCTCCCTGAAGTTGCAGTTGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGT
* * * *
40414518 GGAGCGAATTAAAACCTCAGATCTTATCTCTCTGAAGTTGCAGAGAGCAGATCGCATCTAGTCAT
66 GGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAACAGATCGCATCCAGTCAT
* * *
40414583 ATCTCCTTGAGGTTGCAGTGGAGCAGAATATGTAAGCAAGTCTTATCCTCCTGAAGTTGCAGTGA
131 ATCTCCCTGAGGTTGCAGTGGAGCAGAATACGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGA
*
40414648 GGCAGACTGAAGATGTCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAAT
196 GGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAAT
40414713 CCTATCTCCCTAAAGTTACAGTGGAGTGGATTAAAATATCAGATCTTATCTCTCTGAAGATGCAG
261 CCTATCTCCCTAAAGTTACAGTGGAGTGGATTAAAATATCAGATCTTATCTCTCTGAAGATGCAG
40414778 AGAGTAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTC
326 AGAGTAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTC
*
40414843 TTATCCTCCTGAAGTTGGAGTGAGGCAGACTGAAGGTGGCAAATC
391 TTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGGTGGCAAATC
*
40414888 TTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAGCCGGCAATCCTATCTCCCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGT
40414953 GGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAACAGATCGCATCCAGTCAT
66 GGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAACAGATCGCATCCAGTCAT
*
40415018 ATCTCCCTGAGGTTGCAGTGGAGCCGAATACGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGA
131 ATCTCCCTGAGGTTGCAGTGGAGCAGAATACGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGA
*
40415083 GGCAGACTGAAGATGGCAAATCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAAT
196 GGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAAT
* * * *
40415148 CCTATTTCCGTGAAGTTACAGTGGAGTGGATTAAAATCTCAGATCTTATCTCTCTGAAGATGCAG
261 CCTATCTCCCTAAAGTTACAGTGGAGTGGATTAAAATATCAGATCTTATCTCTCTGAAGATGCAG
*
40415213 AGAGTAGATCGCATCTAGTCTTATCTCCCTGAGGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTC
326 AGAGTAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTC
40415278 TTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGGTGGCAAATC
391 TTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGGTGGCAAATC
*
40415323 TTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAGTCGACAATCCTATCTCCCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGT
*
40415388 GGAGCGGATTAAAACCTCT-GATCTTATCCCTCTGAAGTTG
66 GGAGCGGATTAAAACCT-TAGATCTTATCTCTCTGAAGTTG
40415428 TAGTGGAGCA
Statistics
Matches: 515, Mismatches: 24, Indels: 2
0.95 0.04 0.00
Matches are distributed among these distances:
435 514 1.00
436 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (435 bp):
TTATCTCCCTGAAGTTGTAGTAGAGCAGATTAAAGCCGACAATCCTATCTCCCTGAAGTTGCAGT
GGAGCGGATTAAAACCTTAGATCTTATCTCTCTGAAGTTGCAGAGAACAGATCGCATCCAGTCAT
ATCTCCCTGAGGTTGCAGTGGAGCAGAATACGTAAGCAAGTCTTATCCTCCTGAAGTTACAGTGA
GGCAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAAT
CCTATCTCCCTAAAGTTACAGTGGAGTGGATTAAAATATCAGATCTTATCTCTCTGAAGATGCAG
AGAGTAGATCGCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAGCAAGTC
TTATCCTCCTGAAGTTGCAGTGAGGCAGACTGAAGGTGGCAAATC
Found at i:40417118 original size:22 final size:21
Alignment explanation
Indices: 40417090--40417150 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
40417080 CTTCGTAATT
40417090 TCATTTATTATAT-TTATATTG
1 TCATTTATTATATATTATA-TG
40417111 CTCATTTATTTGATATATTATATG
1 -TCATTTA-TT-ATATATTATATG
* *
40417135 TCATTAATTATTTATT
1 TCATTTATTATATATT
40417151 TGTTCATATA
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 6 0.18
22 9 0.26
23 8 0.24
24 6 0.18
25 5 0.15
ACGTcount: A:0.30, C:0.07, G:0.05, T:0.59
Consensus pattern (21 bp):
TCATTTATTATATATTATATG
Found at i:40417511 original size:98 final size:98
Alignment explanation
Indices: 40417381--40417577 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
40417371 TAAAAAATAA
* * * *
40417381 TAAAGGAAATATTCCGAGTTTGGGATTTTAAAGAAATTGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAATTTGGGATTCTAAAGAAATCGTGCCCTAACGTATTGGGTGTGATTTC
40417446 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
* *
40417479 TAAAGGAAATATTTCAAATTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGATTTC
1 TAAAGGAAATATTCCAAATTTGGGATTCTAAAGAAATCGTGCCCTAACGTATTGGGTGTGATTTC
40417544 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
66 TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
40417577 T
1 T
40417578 TTTATTGTAC
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.30, C:0.10, G:0.23, T:0.38
Consensus pattern (98 bp):
TAAAGGAAATATTCCAAATTTGGGATTCTAAAGAAATCGTGCCCTAACGTATTGGGTGTGATTTC
TTAAATCTTGGATAAGTGGATGTTCTTTTAAAG
Found at i:40427047 original size:14 final size:14
Alignment explanation
Indices: 40427028--40427054 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
40427018 ACTATATTCC
40427028 CACTTTTACTGGTT
1 CACTTTTACTGGTT
40427042 CACTTTTACTGGT
1 CACTTTTACTGGT
40427055 CCATGATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.48
Consensus pattern (14 bp):
CACTTTTACTGGTT
Found at i:40429881 original size:64 final size:64
Alignment explanation
Indices: 40429772--40429912 Score: 264
Period size: 64 Copynumber: 2.2 Consensus size: 64
40429762 GACTAATGGC
*
40429772 ACGCTCTATAATTGACACATGTGCACTAAAATGAGTTAATTTATTAATCCTAAACATATTATAT
1 ACGCTCTATAATTGACACATGTGCACTAAAATGAGTTAATGTATTAATCCTAAACATATTATAT
*
40429836 ACGCTCTATAATTGACACATGTGCACTAAAATGAGTTGATGTATTAATCCTAAACATATTATAT
1 ACGCTCTATAATTGACACATGTGCACTAAAATGAGTTAATGTATTAATCCTAAACATATTATAT
40429900 ACGCTCTATAATT
1 ACGCTCTATAATT
40429913 AGTCAAATTT
Statistics
Matches: 75, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
64 75 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (64 bp):
ACGCTCTATAATTGACACATGTGCACTAAAATGAGTTAATGTATTAATCCTAAACATATTATAT
Found at i:40438009 original size:16 final size:16
Alignment explanation
Indices: 40437990--40438032 Score: 59
Period size: 18 Copynumber: 2.6 Consensus size: 16
40437980 TAAAAATAAT
*
40437990 TTAAGATATAAATTTA
1 TTAATATATAAATTTA
40438006 TTAATATATATAAATTTA
1 TT-A-ATATATAAATTTA
40438024 TTAATATAT
1 TTAATATAT
40438033 GTAAAAATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
16 8 0.33
17 2 0.08
18 14 0.58
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (16 bp):
TTAATATATAAATTTA
Found at i:40438016 original size:18 final size:18
Alignment explanation
Indices: 40437995--40438037 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
40437985 ATAATTTAAG
40437995 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
40438013 ATATAAATTTATTAATAT
1 ATATAAATTTATTAATAT
*
40438031 ATGTAAA
1 ATATAAA
40438038 AATAGCTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (18 bp):
ATATAAATTTATTAATAT
Found at i:40454957 original size:162 final size:162
Alignment explanation
Indices: 40454761--40455074 Score: 556
Period size: 162 Copynumber: 1.9 Consensus size: 162
40454751 GGAGGTTGAA
40454761 TTTTATGACTGTAAAACCATGAAAGAAGAGATGATTCGATTCTTAAGAGCCTGGAGCCTTCAAAC
1 TTTTATGACTGTAAAACCATGAAAGAAGAGATGATTCGATTCTTAAGAGCCTGGAGCCTTCAAAC
* * * * *
40454826 CCTAAACTTTACCTATGATTTCTAGTTTCCCAATTGGTGTCATCTTAGCTATAGTTCCTTGAGTT
66 CCCAAACTTTACCTATGATTTCCAGTTTCCCAATCGGTGTCATCTTAACAATAGTTCCTTGAGTT
40454891 TCATCTTGCCTCTCGTCTTATTGGGGGCTGAC
131 TCATCTTGCCTCTCGTCTTATTGGGGGCTGAC
* * *
40454923 TTTTGTGACTGTAAAACCATGAAAGAATAGATGATTTGATTCTTAAGAGCCTGGAGCCTTCAAAC
1 TTTTATGACTGTAAAACCATGAAAGAAGAGATGATTCGATTCTTAAGAGCCTGGAGCCTTCAAAC
40454988 CCCAAACTTTACCTATGATTTCCAGTTTCCCAATCGGTGTCATCTTAACAATAGTTCCTTGAGTT
66 CCCAAACTTTACCTATGATTTCCAGTTTCCCAATCGGTGTCATCTTAACAATAGTTCCTTGAGTT
40455053 TCATCTTGCCTCTCGTCTTATT
131 TCATCTTGCCTCTCGTCTTATT
40455075 AGAGGCGGGA
Statistics
Matches: 144, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
162 144 1.00
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (162 bp):
TTTTATGACTGTAAAACCATGAAAGAAGAGATGATTCGATTCTTAAGAGCCTGGAGCCTTCAAAC
CCCAAACTTTACCTATGATTTCCAGTTTCCCAATCGGTGTCATCTTAACAATAGTTCCTTGAGTT
TCATCTTGCCTCTCGTCTTATTGGGGGCTGAC
Found at i:40461007 original size:37 final size:38
Alignment explanation
Indices: 40460932--40461007 Score: 93
Period size: 37 Copynumber: 2.0 Consensus size: 38
40460922 ATAATATTAT
* *
40460932 AATTTTAGTATTAAAAATATATTAAATTATTTATATTTAG
1 AATTTTAG-ATTAAAAATATA-TAAATTATTAAAATTTAG
40460972 AATTTTA-ATTAAAACATATA-AAATTATTAAAATTTA
1 AATTTTAGATTAAAA-ATATATAAATTATTAAAATTTA
40461008 AGTTAAAAAG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
37 14 0.42
38 7 0.21
39 5 0.15
40 7 0.21
ACGTcount: A:0.50, C:0.01, G:0.03, T:0.46
Consensus pattern (38 bp):
AATTTTAGATTAAAAATATATAAATTATTAAAATTTAG
Found at i:40461139 original size:10 final size:10
Alignment explanation
Indices: 40461095--40461147 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 10
40461085 ATCAACTATT
40461095 TTTTATTCAA
1 TTTTATTCAA
**
40461105 TTTTAAACAAA
1 TTTTATTC-AA
*
40461116 TTATTTTGTCAA
1 TT-TTAT-TCAA
40461128 TTTTATTCAA
1 TTTTATTCAA
40461138 TTTTATTCAA
1 TTTTATTCAA
40461148 AACATTTTTA
Statistics
Matches: 34, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
10 20 0.59
11 7 0.21
12 6 0.18
13 1 0.03
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55
Consensus pattern (10 bp):
TTTTATTCAA
Found at i:40463010 original size:9 final size:9
Alignment explanation
Indices: 40462996--40463037 Score: 66
Period size: 9 Copynumber: 4.7 Consensus size: 9
40462986 ACAGATCAAA
40462996 AATTAACCG
1 AATTAACCG
*
40463005 AATTAACCA
1 AATTAACCG
*
40463014 AATTAATCG
1 AATTAACCG
40463023 AATTAACCG
1 AATTAACCG
40463032 AATTAA
1 AATTAA
40463038 ACAAACAATC
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
9 29 1.00
ACGTcount: A:0.50, C:0.17, G:0.07, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:40463089 original size:45 final size:45
Alignment explanation
Indices: 40463038--40463125 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
40463028 ACCGAATTAA
*
40463038 ACAAACAATCCTACCGTAATACCTACATTAAATGCACATAATTCT
1 ACAAACAATCCTACCATAATACCTACATTAAATGCACATAATTCT
* *
40463083 ACAAACAATCCTATCATAATACCTATATTAAATGCACATAATT
1 ACAAACAATCCTACCATAATACCTACATTAAATGCACATAATT
40463126 AATTTACTTT
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.44, C:0.24, G:0.03, T:0.28
Consensus pattern (45 bp):
ACAAACAATCCTACCATAATACCTACATTAAATGCACATAATTCT
Found at i:40463988 original size:23 final size:24
Alignment explanation
Indices: 40463953--40463999 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
40463943 AATGACGATG
40463953 GTGATCTGGTGGACGTCGGATGGT
1 GTGATCTGGTGGACGTCGGATGGT
*
40463977 GTGAT-TGGTGGATGTCGGATGGT
1 GTGATCTGGTGGACGTCGGATGGT
40464000 TCACAGAGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 17 0.77
24 5 0.23
ACGTcount: A:0.13, C:0.09, G:0.47, T:0.32
Consensus pattern (24 bp):
GTGATCTGGTGGACGTCGGATGGT
Found at i:40472244 original size:30 final size:29
Alignment explanation
Indices: 40472198--40472276 Score: 88
Period size: 30 Copynumber: 2.7 Consensus size: 29
40472188 AATTATTTAT
* * *
40472198 ATTTAGAATTTTAATTAAAACATATAAAA
1 ATTTAAAATTTAAATTAAAACAGATAAAA
*
40472227 TTATTAAAATTTAAATTAAAAACAGATAAAA
1 AT-TTAAAATTTAAATT-AAAACAGATAAAA
*
40472258 ATTTAAAA-ATAAATTAAAA
1 ATTTAAAATTTAAATTAAAA
40472277 TTTAAACTTA
Statistics
Matches: 42, Mismatches: 6, Indels: 5
0.79 0.11 0.09
Matches are distributed among these distances:
28 4 0.10
29 7 0.17
30 18 0.43
31 13 0.31
ACGTcount: A:0.61, C:0.03, G:0.03, T:0.34
Consensus pattern (29 bp):
ATTTAAAATTTAAATTAAAACAGATAAAA
Found at i:40472265 original size:18 final size:18
Alignment explanation
Indices: 40472242--40472282 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
40472232 AAAATTTAAA
*
40472242 TTAAAAACAGATAAAAAT
1 TTAAAAACAAATAAAAAT
* *
40472260 TTAAAAATAAATTAAAAT
1 TTAAAAACAAATAAAAAT
40472278 TTAAA
1 TTAAA
40472283 CTTAAAAAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.66, C:0.02, G:0.02, T:0.29
Consensus pattern (18 bp):
TTAAAAACAAATAAAAAT
Found at i:40473919 original size:178 final size:177
Alignment explanation
Indices: 40473632--40473982 Score: 648
Period size: 178 Copynumber: 2.0 Consensus size: 177
40473622 GGTACTGTTC
*
40473632 TGATAGTAAACCAAAACAACAAATTTTAGGTTCCATTCAAGTGCAAATTCTAGTTGGTACCTGTC
1 TGATAGTAAACCAAAACAACAAATTTTAGGTTCCATTCAAGTGCAAATTCCAGTTGGTACCTGTC
*
40473697 GTGCCAATACATATCAGTTAATTTCACCTGTACTAGCCAAAATATGGTGTACCGGTACCGAAAAA
66 GTGCCAATACATATCAGTTAATTTCACCTGTACTAGCCAAAATATGCTGTACCGGTACCGAAAAA
*
40473762 TAATTTTAAAATTAAAATTAAATTTTTATTATTTATTTGGTACCGCTT
131 TAATTTTAAAATTAAAATTAAAATTTTATTATTTATTT-GTACCGCTT
* *
40473810 TGATAGTAAACCGAAACAACAAATTTTAGGTTCCATTCAAGTGCAAATTCCGGTTGGTACCTGTC
1 TGATAGTAAACCAAAACAACAAATTTTAGGTTCCATTCAAGTGCAAATTCCAGTTGGTACCTGTC
40473875 GTGCCAATACATATCAGTTAATTTCACCTGTACTAGCCAAAATATGCTGTACCGGTACCGAAAAA
66 GTGCCAATACATATCAGTTAATTTCACCTGTACTAGCCAAAATATGCTGTACCGGTACCGAAAAA
40473940 TAATTTTAAAATTAAAATTAAAATTTTATTATTTATTTGTACC
131 TAATTTTAAAATTAAAATTAAAATTTTATTATTTATTTGTACC
40473983 AAAAAATAAT
Statistics
Matches: 168, Mismatches: 5, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
177 5 0.03
178 163 0.97
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (177 bp):
TGATAGTAAACCAAAACAACAAATTTTAGGTTCCATTCAAGTGCAAATTCCAGTTGGTACCTGTC
GTGCCAATACATATCAGTTAATTTCACCTGTACTAGCCAAAATATGCTGTACCGGTACCGAAAAA
TAATTTTAAAATTAAAATTAAAATTTTATTATTTATTTGTACCGCTT
Found at i:40486056 original size:13 final size:13
Alignment explanation
Indices: 40486023--40486057 Score: 52
Period size: 13 Copynumber: 2.7 Consensus size: 13
40486013 TATTTAAATG
* *
40486023 TTATTATCATTTA
1 TTATTATTATTAA
40486036 TTATTATTATTAA
1 TTATTATTATTAA
40486049 TTATTATTA
1 TTATTATTA
40486058 GTTTTATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (13 bp):
TTATTATTATTAA
Found at i:40486240 original size:35 final size:33
Alignment explanation
Indices: 40486167--40486247 Score: 83
Period size: 35 Copynumber: 2.4 Consensus size: 33
40486157 TATACCCATG
* * * *
40486167 TATAT-TTTTATATATGCGTACACATATATGTT
1 TATATATTTTATTTATGCATACACATACATGTC
*
40486199 TCTATATTTTATTTATGCATACCTACATACATGTC
1 TATATATTTTATTTATGCATA-C-ACATACATGTC
*
40486234 TATATATTTCATTT
1 TATATATTTTATTT
40486248 TCATAATGTG
Statistics
Matches: 39, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
32 4 0.10
33 13 0.33
34 1 0.03
35 21 0.54
ACGTcount: A:0.30, C:0.14, G:0.06, T:0.51
Consensus pattern (33 bp):
TATATATTTTATTTATGCATACACATACATGTC
Found at i:40493384 original size:28 final size:28
Alignment explanation
Indices: 40493353--40493410 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
40493343 CTCTGAGGGG
40493353 AGTAAAATTCCCATTCCAAAAATATCTA
1 AGTAAAATTCCCATTCCAAAAATATCTA
40493381 AGTAAAATTCCCATTCCAAAAATATCTA
1 AGTAAAATTCCCATTCCAAAAATATCTA
40493409 AG
1 AG
40493411 ACCACGAAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.47, C:0.21, G:0.05, T:0.28
Consensus pattern (28 bp):
AGTAAAATTCCCATTCCAAAAATATCTA
Found at i:40498876 original size:45 final size:45
Alignment explanation
Indices: 40498812--40499088 Score: 373
Period size: 45 Copynumber: 6.2 Consensus size: 45
40498802 TCAGAGAACT
* * *
40498812 GATCGAAGATAGCAGATCTTGTCTTCCTGAATTAGCAGCGAAGTA
1 GATCGAAGATAGAAGATCTTGTCTTCCTGTATTGGCAGCGAAGTA
40498857 GATCGAAGATAGAAGATCTTGTCTTCCTGTATTGGCAGCGAAGTA
1 GATCGAAGATAGAAGATCTTGTCTTCCTGTATTGGCAGCGAAGTA
* * *
40498902 GATCAAAGATAGCAGATCTTGTCTTCCTGTATTGGCAACGAAGTA
1 GATCGAAGATAGAAGATCTTGTCTTCCTGTATTGGCAGCGAAGTA
* *
40498947 GATCAAAGATAGAA-AGTCTTGTCTTCCTGTATTGGCAGCGGAGTA
1 GATCGAAGATAGAAGA-TCTTGTCTTCCTGTATTGGCAGCGAAGTA
* *
40498992 GATCGAAGATAGCAAG-TCTTGTCTTCCTATATTGGTAGCGAAGTA
1 GATCGAAGATAG-AAGATCTTGTCTTCCTGTATTGGCAGCGAAGTA
* * *
40499037 GA-CTGAAGATA-ATAGATCTTGTCTTCCTGTACTGGCAACGAAGCA
1 GATC-GAAGATAGA-AGATCTTGTCTTCCTGTATTGGCAGCGAAGTA
40499082 GATCGAA
1 GATCGAA
40499089 AAACAAGTCT
Statistics
Matches: 207, Mismatches: 18, Indels: 14
0.87 0.08 0.06
Matches are distributed among these distances:
43 1 0.00
44 4 0.02
45 199 0.96
46 3 0.01
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (45 bp):
GATCGAAGATAGAAGATCTTGTCTTCCTGTATTGGCAGCGAAGTA
Found at i:40500618 original size:3 final size:3
Alignment explanation
Indices: 40500602--40500642 Score: 55
Period size: 3 Copynumber: 13.0 Consensus size: 3
40500592 TATTTAAATG
*
40500602 TTA TTA TCA TTTA TTA TTA TTA TTA TTA TTAA TTA TTA TTA
1 TTA TTA TTA -TTA TTA TTA TTA TTA TTA TT-A TTA TTA TTA
40500643 GTTTTATTTC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
3 29 0.85
4 5 0.15
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (3 bp):
TTA
Found at i:40500630 original size:22 final size:22
Alignment explanation
Indices: 40500602--40500650 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
40500592 TATTTAAATG
*
40500602 TTATTATCATTTATTATTA-TT
1 TTATTATCAATTATTATTAGTT
*
40500623 ATTATTATTAATTATTATTAGTT
1 -TTATTATCAATTATTATTAGTT
40500646 TTATT
1 TTATT
40500651 TCCCTTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 22 0.92
23 2 0.08
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (22 bp):
TTATTATCAATTATTATTAGTT
Found at i:40500641 original size:16 final size:16
Alignment explanation
Indices: 40500602--40500642 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
40500592 TATTTAAATG
*
40500602 TTATTATCATTTATTA
1 TTATTATTATTTATTA
40500618 TTATTATTA-TTATTAA
1 TTATTATTATTTATT-A
40500634 TTATTATTA
1 TTATTATTA
40500643 GTTTTATTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 5 0.22
16 18 0.78
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (16 bp):
TTATTATTATTTATTA
Found at i:40500650 original size:19 final size:19
Alignment explanation
Indices: 40500602--40500642 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
40500592 TATTTAAATG
* *
40500602 TTATTATCATTTATTATTA
1 TTATTATTATTAATTATTA
40500621 TTATTATTATTAATTATTA
1 TTATTATTATTAATTATTA
40500640 TTA
1 TTA
40500643 GTTTTATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.63
Consensus pattern (19 bp):
TTATTATTATTAATTATTA
Found at i:40505951 original size:7 final size:7
Alignment explanation
Indices: 40505939--40505965 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
40505929 TTTATTTATA
40505939 TTTATTT
1 TTTATTT
40505946 TTTATTT
1 TTTATTT
40505953 TTTATTT
1 TTTATTT
40505960 TTTATT
1 TTTATT
40505966 ATTATATATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTATTT
Done.