Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 135 of 173
Found at i:41022290 original size:18 final size:18
Alignment explanation
Indices: 41022267--41022330 Score: 58
Period size: 18 Copynumber: 3.4 Consensus size: 18
41022257 AATTCAAGAC
41022267 TTATGTAATGTTTTTTAA
1 TTATGTAATGTTTTTTAA
* **
41022285 TTATGTAGTGTTAATTCAAGA
1 TTATGTAATGTT--TTTTA-A
41022306 CTTATGTAATG-TTTTTAA
1 -TTATGTAATGTTTTTTAA
41022324 TTATGTA
1 TTATGTA
41022331 GTGACTCAAA
Statistics
Matches: 36, Mismatches: 6, Indels: 9
0.71 0.12 0.18
Matches are distributed among these distances:
17 7 0.19
18 12 0.33
19 3 0.08
20 3 0.08
21 2 0.06
22 9 0.25
ACGTcount: A:0.30, C:0.03, G:0.14, T:0.53
Consensus pattern (18 bp):
TTATGTAATGTTTTTTAA
Found at i:41022310 original size:22 final size:22
Alignment explanation
Indices: 41022253--41022318 Score: 77
Period size: 22 Copynumber: 3.2 Consensus size: 22
41022243 GTCAATTATG
41022253 TGTTAATTCAAGACTTATGTAA
1 TGTTAATTCAAGACTTATGTAA
** *
41022275 TGTT--TTTTA-A-TTATGTAG
1 TGTTAATTCAAGACTTATGTAA
41022293 TGTTAATTCAAGACTTATGTAA
1 TGTTAATTCAAGACTTATGTAA
41022315 TGTT
1 TGTT
41022319 TTTAATTATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
18 11 0.32
19 1 0.03
20 6 0.18
21 1 0.03
22 15 0.44
ACGTcount: A:0.30, C:0.06, G:0.15, T:0.48
Consensus pattern (22 bp):
TGTTAATTCAAGACTTATGTAA
Found at i:41022386 original size:20 final size:18
Alignment explanation
Indices: 41022359--41022413 Score: 58
Period size: 17 Copynumber: 3.0 Consensus size: 18
41022349 TAATAGTTTT
41022359 AATTATGTAGTGATTTAA
1 AATTATGTAGTGATTTAA
* * *
41022377 AGATTTATGTAATGCTTT-T
1 A-A-TTATGTAGTGATTTAA
41022396 AATTATGTAGTGATTTAA
1 AATTATGTAGTGATTTAA
41022414 TTCGAGTAAT
Statistics
Matches: 28, Mismatches: 6, Indels: 6
0.70 0.15 0.15
Matches are distributed among these distances:
17 12 0.43
18 2 0.07
19 2 0.07
20 12 0.43
ACGTcount: A:0.35, C:0.02, G:0.16, T:0.47
Consensus pattern (18 bp):
AATTATGTAGTGATTTAA
Found at i:41022403 original size:17 final size:17
Alignment explanation
Indices: 41022307--41022404 Score: 54
Period size: 17 Copynumber: 5.4 Consensus size: 17
41022297 AATTCAAGAC
*
41022307 TTATGTAATGTTTTTAA
1 TTATGTAATGCTTTTAA
* ***
41022324 TTATGTAGTGACTCAAAGA
1 TTATGTAATG-CTTTTA-A
41022343 CTTATGTAATAG-TTTTAA
1 -TTATGTAAT-GCTTTTAA
* * *
41022361 TTATGTAGTGATTTAAAGA
1 TTATGTAATGCTTT-TA-A
41022380 TTTATGTAATGCTTTTAA
1 -TTATGTAATGCTTTTAA
41022398 TTATGTA
1 TTATGTA
41022405 GTGATTTAAT
Statistics
Matches: 59, Mismatches: 14, Indels: 16
0.66 0.16 0.18
Matches are distributed among these distances:
16 1 0.02
17 27 0.46
18 5 0.08
19 5 0.08
20 20 0.34
21 1 0.02
ACGTcount: A:0.33, C:0.04, G:0.15, T:0.48
Consensus pattern (17 bp):
TTATGTAATGCTTTTAA
Found at i:41022407 original size:37 final size:37
Alignment explanation
Indices: 41022262--41022413 Score: 207
Period size: 37 Copynumber: 4.0 Consensus size: 37
41022252 GTGTTAATTC
* *
41022262 AAGACTTATGTAATGTTTTTTAATTATGTAGTGTTAATTC
1 AAGACTTATGTAATG-TTTTTAATTATGTAGTG--ATTTA
* *
41022302 AAGACTTATGTAATGTTTTTAATTATGTAGTGACTCA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTTA
41022339 AAGACTTATGTAATAG-TTTTAATTATGTAGTGATTTA
1 AAGACTTATGTAAT-GTTTTTAATTATGTAGTGATTTA
* *
41022376 AAGATTTATGTAATGCTTTTAATTATGTAGTGATTTA
1 AAGACTTATGTAATGTTTTTAATTATGTAGTGATTTA
41022413 A
1 A
41022414 TTCGAGTAAT
Statistics
Matches: 104, Mismatches: 6, Indels: 7
0.89 0.05 0.06
Matches are distributed among these distances:
36 1 0.01
37 70 0.67
38 1 0.01
39 17 0.16
40 15 0.14
ACGTcount: A:0.33, C:0.05, G:0.16, T:0.47
Consensus pattern (37 bp):
AAGACTTATGTAATGTTTTTAATTATGTAGTGATTTA
Found at i:41022431 original size:9 final size:9
Alignment explanation
Indices: 41022419--41022492 Score: 76
Period size: 9 Copynumber: 7.8 Consensus size: 9
41022409 TTTAATTCGA
41022419 GTAATTTGG
1 GTAATTTGG
41022428 GTAATTTTCGG
1 GTAA-TTT-GG
*
41022439 GTAATTCGG
1 GTAATTTGG
41022448 GTAATTTGG
1 GTAATTTGG
41022457 GTAATTTTCGG
1 GTAA-TTT-GG
* *
41022468 ATAATTCGG
1 GTAATTTGG
*
41022477 GTAATTCGG
1 GTAATTTGG
41022486 GTAATTT
1 GTAATTT
41022493 TTAACCAAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
9 34 0.62
10 10 0.18
11 11 0.20
ACGTcount: A:0.23, C:0.07, G:0.28, T:0.42
Consensus pattern (9 bp):
GTAATTTGG
Found at i:41022442 original size:20 final size:19
Alignment explanation
Indices: 41022414--41022492 Score: 90
Period size: 20 Copynumber: 4.1 Consensus size: 19
41022404 AGTGATTTAA
* *
41022414 TTCGAGTAATTTGGGTAATT
1 TTCGGGTAATTCGGGTAA-T
41022434 TTCGGGTAATTCGGGTAAT
1 TTCGGGTAATTCGGGTAAT
*
41022453 TT-GGGTAATTTTCGGATAA-
1 TTCGGGTAA--TTCGGGTAAT
41022472 TTCGGGTAATTCGGGTAAT
1 TTCGGGTAATTCGGGTAAT
41022491 TT
1 TT
41022493 TTAACCAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
18 14 0.27
19 7 0.14
20 30 0.59
ACGTcount: A:0.23, C:0.08, G:0.28, T:0.42
Consensus pattern (19 bp):
TTCGGGTAATTCGGGTAAT
Found at i:41022453 original size:29 final size:29
Alignment explanation
Indices: 41022411--41022493 Score: 139
Period size: 29 Copynumber: 2.9 Consensus size: 29
41022401 TGTAGTGATT
* *
41022411 TAATTCGAGTAATTTGGGTAATTTTCGGG
1 TAATTCGGGTAATTTGGGTAATTTTCGGA
41022440 TAATTCGGGTAATTTGGGTAATTTTCGGA
1 TAATTCGGGTAATTTGGGTAATTTTCGGA
*
41022469 TAATTCGGGTAATTCGGGTAATTTT
1 TAATTCGGGTAATTTGGGTAATTTT
41022494 TAACCAAAAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 51 1.00
ACGTcount: A:0.24, C:0.07, G:0.27, T:0.42
Consensus pattern (29 bp):
TAATTCGGGTAATTTGGGTAATTTTCGGA
Found at i:41024132 original size:16 final size:16
Alignment explanation
Indices: 41024101--41024137 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
41024091 ATGTGAATAA
41024101 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
41024117 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
41024133 TATTA
1 TATTA
41024138 AAATAAATAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:41024148 original size:15 final size:14
Alignment explanation
Indices: 41024096--41024177 Score: 51
Period size: 13 Copynumber: 5.5 Consensus size: 14
41024086 ATAATATGTG
41024096 AATAATATTATTTAA
1 AATAATATTA-TTAA
* *
41024111 AATTATTATTTTTAA
1 AA-TAATATTATTAA
*
41024126 AAT-TTATTATTAA
1 AATAATATTATTAA
*
41024139 AATAAATATTAAATATTA
1 AAT-AATATT--AT-TAA
41024157 AATAAT-TTATTAAA
1 AATAATATTATT-AA
41024171 AATAATA
1 AATAATA
41024178 AATTATATTA
Statistics
Matches: 53, Mismatches: 6, Indels: 16
0.71 0.08 0.21
Matches are distributed among these distances:
13 13 0.25
14 10 0.19
15 12 0.23
16 8 0.15
17 5 0.09
18 5 0.09
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (14 bp):
AATAATATTATTAA
Found at i:41024288 original size:9 final size:9
Alignment explanation
Indices: 41024274--41024298 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
41024264 ATTTTATATT
41024274 AATATTTGA
1 AATATTTGA
41024283 AATATTTGA
1 AATATTTGA
41024292 AATATTT
1 AATATTT
41024299 TTAAAAATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.44, C:0.00, G:0.08, T:0.48
Consensus pattern (9 bp):
AATATTTGA
Found at i:41025146 original size:98 final size:98
Alignment explanation
Indices: 41024960--41025156 Score: 331
Period size: 98 Copynumber: 2.0 Consensus size: 98
41024950 GTACAATAAA
*
41024960 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
* * * *
41025025 CCTTTAGAATCTCAAATTTGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
*
41025058 ACTTTAAAAGAACATCCACTTATTCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
*
41025123 CCTTTAAAATCCCAAACTCGGAATATTTTCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
41025156 A
1 A
41025157 TTATTTTTAA
Statistics
Matches: 92, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
98 92 1.00
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATT
CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:41027576 original size:44 final size:44
Alignment explanation
Indices: 41027527--41028069 Score: 227
Period size: 44 Copynumber: 12.5 Consensus size: 44
41027517 GATCTGTTCT
*
41027527 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * * *
41027571 CTGCAACTTCA-AGAAGATAGGAT-TGTCGGCTTTAATCTGCTCTA
1 CTGCAACTTCAGAG-AGATAAGATCTG-AGGTTTTAATCTGCTCCA
* * ** * *
41027615 CTACAACTTCAGGGAGATAAGA-CTTGCCA-CCTTCAGTCTGC-CTCA
1 CTGCAACTTCAGAGAGATAAGATC-TG--AGGTTTTAATCTGCTC-CA
** *
41027660 CTGCAACTTCAG-GAGGATAAGA-CTTG-CTTTGCTTAGTCTGCTCCA
1 CTGCAACTTCAGAGA-GATAAGATC-TGAGGTT--TTAATCTGCTCCA
* * *** * *
41027705 CTGTAACTTCA-AGGAGATAAGA-CT-A-GATGCGATCTACT-CT
1 CTGCAACTTCAGA-GAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * **
41027745 CTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * * *
41027789 CTGTAACTTCAGGGAGATAAGAT-TGTCGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTG-AGGTTTTAATCTGCTCCA
* * *** * *
41027833 CTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGC-CTCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGT-TTTAATCTGCTC-CA
* * * * *
41027878 CTACAACTTCAG-GAGGATAAGA-CT-TGCTTACATATTCTGCTCCA
1 CTGCAACTTCAGAGA-GATAAGATCTGAGGTT--TTAATCTGCTCCA
* * * * *** *
41027922 CTGCAACCTCAGAGAGACATGA-CT-A-GATGCGATCTGCT-CT
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* *
41027962 CTGCAACTTTAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
* * *
41028006 CTGCAACTTCAG-GAAGATAGGAT-T-ATTGGCTTTAATCAGCTCCA
1 CTGCAACTTCAGAG-AGATAAGATCTGA--GGTTTTAATCTGCTCCA
* *
41028050 CTGCAACTTTAGGGAGATAA
1 CTGCAACTTCAGAGAGATAA
41028070 AACTCAATTT
Statistics
Matches: 376, Mismatches: 86, Indels: 74
0.70 0.16 0.14
Matches are distributed among these distances:
40 38 0.10
41 16 0.04
42 4 0.01
43 27 0.07
44 191 0.51
45 97 0.26
46 3 0.01
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (44 bp):
CTGCAACTTCAGAGAGATAAGATCTGAGGTTTTAATCTGCTCCA
Found at i:41027593 original size:217 final size:218
Alignment explanation
Indices: 41027095--41028069 Score: 1409
Period size: 217 Copynumber: 4.5 Consensus size: 218
41027085 TGCTCCACTA
* * * * *
41027095 CAACTTCAGGGGGATAAGATCGGAGGTTTTAATCCGCTTCACTGCAACTTCAGGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATT
* * *
41027160 GTCGACTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCACCTTCAATCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
* * * * *
41027225 CCGCAGCTTTAGGAGGATAAGACTTGCTTTTCTTAGTCTGCTCCACTGCAACTTCAGGGAGATAA
131 CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
*
41027290 AACTAGATGCGATCTACTCTCTG
196 GACTAGATGCGATCTACTCTCTG
* * * *
41027313 CATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCACTGTAACTTCAGGGAA-ATAGGAT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCA-GGAAGATAGGAT
* ** *
41027377 TGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGATTTGCCTTCTTCAGTTTGCCTC
65 TGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTC
* * *
41027442 ACTGTAACTTCAGGAGGATAAGACTTGC-TTACATATTCGGCTCCACTGCAACCTT-AGGGAGAT
130 ACTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAA-CTTCAGGGAGAT
* **
41027505 ATGACTAGATGCGATCTGTTCTCTG
194 AAGACTAGATGCGATCTACTCTCTG
*
41027530 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGAAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATT
* * *
41027595 GTCGGCTTTAATCTGCTCTACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAGTCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
* * * *
41027660 CTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCACTGTAACTTCAAGGAGATAA
131 CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
41027725 GACTAGATGCGATCTACTCTCTG
196 GACTAGATGCGATCTACTCTCTG
* * * * * *
41027748 CATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCACTGTAACTTCAGGGAGATAAGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATT
*
41027813 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCATCTTCAGTCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
* * * * * *
41027878 CTACAACTTCAGGAGGATAAGACTTGC-TTACATATTCTGCTCCACTGCAACCTCAGAGAGACAT
131 CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
*
41027942 GACTAGATGCGATCTGCTCTCTG
196 GACTAGATGCGATCTACTCTCTG
*
41027965 CAACTTTAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATT
* * * *
41028030 ATTGGCTTTAATCAGCTCCACTGCAACTTTAGGGAGATAA
66 GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAA
41028070 AACTCAATTT
Statistics
Matches: 669, Mismatches: 83, Indels: 11
0.88 0.11 0.01
Matches are distributed among these distances:
216 3 0.00
217 335 0.50
218 328 0.49
219 3 0.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (218 bp):
CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATT
GTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCCACCTTCAGTCTGCCTCA
CTGCAACTTCAGGAGGATAAGACTTGCTTTACATAGTCTGCTCCACTGCAACTTCAGGGAGATAA
GACTAGATGCGATCTACTCTCTG
Found at i:41027905 original size:435 final size:435
Alignment explanation
Indices: 41027095--41028069 Score: 1635
Period size: 435 Copynumber: 2.2 Consensus size: 435
41027085 TGCTCCACTA
* * * * *
41027095 CAACTTCAGGGGGATAAGATCGGAGGTTTTAATCCGCTTCACTGCAACTTCAGGGAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATT
* *
41027160 GTCGACTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGATTTGCCACCTTCAATCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAATCTGCCTCA
* * * *
41027225 CCGCAGCTTTAGGAGGATAAGACTTGCTTTTCTTAGTCTGCTCCACTGCAACTTCAGGGAGATAA
131 CCGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAAGGAGATAA
41027290 AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
196 AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
* *
41027355 TGTAACTTCAGGGAAATAGGATTGTCGGCTTTAATCTGCTCCACTGTAACTTCAGGGAGATAAGA
261 TGTAACTTCAGGGAAATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
* * **
41027420 TTTGCCTTCTTCAGTTTGCCTCACTGTAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
326 TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
* * * *
41027485 CACTGCAACCTTAGGGAGATATGACTAGATGCGATCTGTTCTCTG
391 CACTGCAACCTCAGAGAGACATGACTAGATGCGATCTGCTCTCTG
*
41027530 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAAGAAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATT
* *
41027595 GTCGGCTTTAATCTGCTCTACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAGTCTGCCTCA
66 GTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAATCTGCCTCA
* *
41027660 CTGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCACTGTAACTTCAAGGAGATAA
131 CCGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAAGGAGATAA
*
41027725 GACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
196 AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
*
41027790 TGTAACTTCAGGGAGATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
261 TGTAACTTCAGGGAAATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
*
41027855 TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCTGCTC
326 TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
41027920 CACTGCAACCTCAGAGAGACATGACTAGATGCGATCTGCTCTCTG
391 CACTGCAACCTCAGAGAGACATGACTAGATGCGATCTGCTCTCTG
*
41027965 CAACTTTAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATT
1 CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATT
* * * * *
41028030 ATTGGCTTTAATCAGCTCCACTGCAACTTTAGGGAGATAA
66 GTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAA
41028070 AACTCAATTT
Statistics
Matches: 503, Mismatches: 37, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
435 503 1.00
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (435 bp):
CAACTTCAGAGAGATAAGATCTGAGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATT
GTCGGCTTTAATCTGCTCCACTACAACTTCAGGGAGATAAGACTTGCCACCTTCAATCTGCCTCA
CCGCAACTTCAGGAGGATAAGACTTGCTTTGCTTAGTCTGCTCCACTGCAACTTCAAGGAGATAA
AACTAGATGCGATCTACTCTCTGCATCTTCAGAGAGATAAGATCTGAGATTTTAATCCACTCCAC
TGTAACTTCAGGGAAATAAGATTGTCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA
TTTGCCATCTTCAGTCTGCCTCACTACAACTTCAGGAGGATAAGACTTGCTTACATATTCGGCTC
CACTGCAACCTCAGAGAGACATGACTAGATGCGATCTGCTCTCTG
Found at i:41049792 original size:98 final size:98
Alignment explanation
Indices: 41049618--41049814 Score: 340
Period size: 98 Copynumber: 2.0 Consensus size: 98
41049608 GTACAATAAA
*
41049618 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATTACACCCAATACGTTAGGGCACGATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATTACACCCAATACGTTAGGGCACAATT
* * *
41049683 CCTTTAGAATCCCAAATTTGGAATATTTCCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
*
41049716 ACTTTAAAAGAACATCCACTTATCTAAGATTTAAGAAATTACACCCAATACGTTAGGGCACAATT
1 ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATTACACCCAATACGTTAGGGCACAATT
*
41049781 CCTTTAAAATCCCAAACTCGGAATATTTTCTTT
66 CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
41049814 A
1 A
41049815 TTATTTTTAA
Statistics
Matches: 93, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
98 93 1.00
ACGTcount: A:0.37, C:0.21, G:0.10, T:0.31
Consensus pattern (98 bp):
ACTTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATTACACCCAATACGTTAGGGCACAATT
CCTTTAAAATCCCAAACTCGGAATATTTCCTTT
Found at i:41050104 original size:22 final size:21
Alignment explanation
Indices: 41050047--41050107 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 21
41050037 TATATGAACA
* *
41050047 AATAAATAATGAATGACATAT
1 AATATATAATAAATGACATAT
41050068 AATATATCAAATAAATGAGCAATAT
1 AATATAT--AATAAATGA-C-ATAT
41050093 AA-ATATAATAAATGA
1 AATATATAATAAATGA
41050108 AATTTCGAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
21 6 0.18
22 9 0.26
23 8 0.24
24 5 0.15
25 6 0.18
ACGTcount: A:0.59, C:0.05, G:0.08, T:0.28
Consensus pattern (21 bp):
AATATATAATAAATGACATAT
Found at i:41057252 original size:14 final size:16
Alignment explanation
Indices: 41057226--41057259 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
41057216 ATTGTTTAGA
41057226 TATTGTATAATTTT-T
1 TATTGTATAATTTTGT
41057241 TATTGT-TAATTTTGT
1 TATTGTATAATTTTGT
41057256 TATT
1 TATT
41057260 ATTTTAGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.39
15 11 0.61
ACGTcount: A:0.24, C:0.00, G:0.09, T:0.68
Consensus pattern (16 bp):
TATTGTATAATTTTGT
Found at i:41060612 original size:20 final size:21
Alignment explanation
Indices: 41060586--41060631 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
41060576 AGCCGGGATC
41060586 ACTAACTAATACTAATCTAAT
1 ACTAACTAATACTAATCTAAT
*
41060607 -CTAACTAATACTAATTTAAT
1 ACTAACTAATACTAATCTAAT
41060627 ACTAA
1 ACTAA
41060632 TAGAATAGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.17, G:0.00, T:0.35
Consensus pattern (21 bp):
ACTAACTAATACTAATCTAAT
Found at i:41060628 original size:11 final size:11
Alignment explanation
Indices: 41060586--41060632 Score: 64
Period size: 11 Copynumber: 4.5 Consensus size: 11
41060576 AGCCGGGATC
41060586 ACTAA-CTAAT
1 ACTAATCTAAT
41060596 ACTAATCTAAT
1 ACTAATCTAAT
41060607 -CTAA-CTAAT
1 ACTAATCTAAT
*
41060616 ACTAATTTAAT
1 ACTAATCTAAT
41060627 ACTAAT
1 ACTAAT
41060633 AGAATAGAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 5
0.85 0.03 0.13
Matches are distributed among these distances:
9 5 0.15
10 13 0.39
11 15 0.45
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (11 bp):
ACTAATCTAAT
Found at i:41060647 original size:22 final size:22
Alignment explanation
Indices: 41060622--41060665 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
41060612 TAATACTAAT
41060622 TTAATACTAATA-GAATAGAATA
1 TTAAT-CTAATACGAATAGAATA
*
41060644 TTAATCTAATACTAATAGAATA
1 TTAATCTAATACGAATAGAATA
41060666 GAAAAAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.34
Consensus pattern (22 bp):
TTAATCTAATACGAATAGAATA
Found at i:41060648 original size:27 final size:27
Alignment explanation
Indices: 41060613--41060668 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
41060603 TAATCTAACT
*
41060613 AATACTAATTTAATACTAATAGAATAG
1 AATACTAATCTAATACTAATAGAATAG
*
41060640 AATATTAATCTAATACTAATAGAATAG
1 AATACTAATCTAATACTAATAGAATAG
41060667 AA
1 AA
41060669 AAAATATAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.32
Consensus pattern (27 bp):
AATACTAATCTAATACTAATAGAATAG
Found at i:41060653 original size:5 final size:6
Alignment explanation
Indices: 41060590--41060660 Score: 50
Period size: 6 Copynumber: 13.2 Consensus size: 6
41060580 GGGATCACTA
*
41060590 ACTAAT ACTAAT -CTAAT -CT-A- ACTAAT ACTAAT -TTAAT ACTAAT
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT
* * *
41060633 A-GAAT A-GAAT ATTAAT -CTAAT ACTAAT A
1 ACTAAT ACTAAT ACTAAT ACTAAT ACTAAT A
41060661 GAATAGAAAA
Statistics
Matches: 54, Mismatches: 5, Indels: 12
0.76 0.07 0.17
Matches are distributed among these distances:
4 3 0.06
5 25 0.46
6 26 0.48
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.35
Consensus pattern (6 bp):
ACTAAT
Found at i:41060694 original size:18 final size:18
Alignment explanation
Indices: 41060651--41060701 Score: 65
Period size: 18 Copynumber: 3.1 Consensus size: 18
41060641 ATATTAATCT
*
41060651 AATACTAATAGAATAG-A
1 AATACTAATATAATAGAA
41060668 AA-A--AATATAATAGAA
1 AATACTAATATAATAGAA
41060683 AATACTAATATAATAGAA
1 AATACTAATATAATAGAA
41060701 A
1 A
41060702 GAAAAGAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
14 9 0.31
15 3 0.10
16 2 0.07
17 2 0.07
18 13 0.45
ACGTcount: A:0.65, C:0.04, G:0.08, T:0.24
Consensus pattern (18 bp):
AATACTAATATAATAGAA
Found at i:41063785 original size:20 final size:20
Alignment explanation
Indices: 41063750--41063818 Score: 75
Period size: 20 Copynumber: 3.5 Consensus size: 20
41063740 TAAAGAAATA
* *
41063750 TTGGTGCACCTGATTGCACT
1 TTGGTGCCCCTAATTGCACT
* * *
41063770 CTGGTGTCCCTAATTGTACT
1 TTGGTGCCCCTAATTGCACT
* *
41063790 TTCGTGCCCCTATTTGCACT
1 TTGGTGCCCCTAATTGCACT
41063810 TTGGTGCCC
1 TTGGTGCCC
41063819 ATATATGAAC
Statistics
Matches: 38, Mismatches: 11, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 38 1.00
ACGTcount: A:0.12, C:0.29, G:0.22, T:0.38
Consensus pattern (20 bp):
TTGGTGCCCCTAATTGCACT
Found at i:41063830 original size:20 final size:20
Alignment explanation
Indices: 41063787--41063830 Score: 52
Period size: 20 Copynumber: 2.2 Consensus size: 20
41063777 CCCTAATTGT
* * *
41063787 ACTTTCGTGCCCCTATTTGC
1 ACTTTCGTGCCCATATATGA
*
41063807 ACTTTGGTGCCCATATATGA
1 ACTTTCGTGCCCATATATGA
41063827 ACTT
1 ACTT
41063831 CAATGCCTTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.18, C:0.27, G:0.16, T:0.39
Consensus pattern (20 bp):
ACTTTCGTGCCCATATATGA
Found at i:41065821 original size:25 final size:24
Alignment explanation
Indices: 41065765--41065869 Score: 81
Period size: 25 Copynumber: 4.3 Consensus size: 24
41065755 ACCACAACTT
*
41065765 GTATGAGCTTACCGATTTTAGCTC
1 GTATGAGCTTACCGATTTCAGCTC
*
41065789 GTGA-GAGCTTACTGATTTACAGCTC
1 GT-ATGAGCTTACCGATTT-CAGCTC
** *
41065814 GTATGAGCTTACAAATATTTAGCTC
1 GTATGAGCTTACCGAT-TTCAGCTC
* *
41065839 GAAGGAGCTTACC-ATTTATCA-CTC
1 GTATGAGCTTACCGA-TT-TCAGCTC
41065863 GTATGAG
1 GTATGAG
41065870 TATACATGTA
Statistics
Matches: 64, Mismatches: 11, Indels: 12
0.74 0.13 0.14
Matches are distributed among these distances:
24 26 0.41
25 36 0.56
26 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (24 bp):
GTATGAGCTTACCGATTTCAGCTC
Found at i:41065856 original size:49 final size:49
Alignment explanation
Indices: 41065765--41065869 Score: 126
Period size: 49 Copynumber: 2.1 Consensus size: 49
41065755 ACCACAACTT
** * *
41065765 GTATGAGCTTACCGATTTTAGCTCGTGAGAGCTTACTGATTTA-CAGCTC
1 GTATGAGCTTACAAATTTTAGCTCGAGAGAGCTTACTCATTTATCA-CTC
41065814 GTATGAGCTTACAAATATTTAGCTCGA-AGGAGCTTAC-CATTTATCACTC
1 GTATGAGCTTACAAAT-TTTAGCTCGAGA-GAGCTTACTCATTTATCACTC
41065863 GTATGAG
1 GTATGAG
41065870 TATACATGTA
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
49 30 0.61
50 19 0.39
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (49 bp):
GTATGAGCTTACAAATTTTAGCTCGAGAGAGCTTACTCATTTATCACTC
Found at i:41067077 original size:40 final size:40
Alignment explanation
Indices: 41067022--41067103 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
41067012 TTACAAATGG
41067022 TTATTGTGTTGCATTAGAAGATGTTTAACTATGTGTTGTT
1 TTATTGTGTTGCATTAGAAGATGTTTAACTATGTGTTGTT
41067062 TTATTGTGTTGCATTAGAAGATGTTTAACTATGTGTTGTT
1 TTATTGTGTTGCATTAGAAGATGTTTAACTATGTGTTGTT
41067102 TT
1 TT
41067104 CTTTTAAAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.22, C:0.05, G:0.22, T:0.51
Consensus pattern (40 bp):
TTATTGTGTTGCATTAGAAGATGTTTAACTATGTGTTGTT
Found at i:41070457 original size:20 final size:20
Alignment explanation
Indices: 41070432--41070481 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
41070422 TGGCTTAAAA
41070432 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
41070452 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
41070469 GTGGTAGTGGATT
1 TTGGTAGTGGATT
41070482 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:41075086 original size:20 final size:20
Alignment explanation
Indices: 41075061--41075110 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
41075051 TGGCTTAAAA
41075061 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
41075081 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
41075098 GTGGTAGTGGATT
1 TTGGTAGTGGATT
41075111 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:41081014 original size:63 final size:63
Alignment explanation
Indices: 41080915--41081040 Score: 216
Period size: 63 Copynumber: 2.0 Consensus size: 63
41080905 TATGGGATAC
41080915 CTACAAAGGGAAAATCAAAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
1 CTACAAAGGGAAAATCAAAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
* * **
41080978 CTACAAAGGGAAATTCAGAGAAAATGAACACTTGTCGTAATACCCTTTAACTAGAAAAGATCA
1 CTACAAAGGGAAAATCAAAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
41081041 TAGAGATCAA
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.47, C:0.17, G:0.16, T:0.21
Consensus pattern (63 bp):
CTACAAAGGGAAAATCAAAGAAAATGAACACTTGTCGTAATACCCTTTAAAGAGAAAAGATCA
Found at i:41081940 original size:26 final size:26
Alignment explanation
Indices: 41081903--41081964 Score: 108
Period size: 26 Copynumber: 2.4 Consensus size: 26
41081893 CATTTGAAAG
41081903 TCCTAG-TTTTCGACGACTGTCTCTT
1 TCCTAGATTTTCGACGACTGTCTCTT
*
41081928 TCCTAGATTTTCGACGATTGTCTCTT
1 TCCTAGATTTTCGACGACTGTCTCTT
41081954 TCCTAGATTTT
1 TCCTAGATTTT
41081965 TCTTATTGGG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
25 6 0.17
26 29 0.83
ACGTcount: A:0.15, C:0.24, G:0.15, T:0.47
Consensus pattern (26 bp):
TCCTAGATTTTCGACGACTGTCTCTT
Found at i:41083602 original size:41 final size:41
Alignment explanation
Indices: 41083539--41083724 Score: 309
Period size: 41 Copynumber: 4.5 Consensus size: 41
41083529 TTTAACATAT
* * *
41083539 TCACCGGCACTTAGCCTACTAGGCTTATAGCCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
* *
41083580 TCATCGGCACTTAGCCTGCTAGGTTTATAACCTGATTTAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
* *
41083621 TCACCGGCACTCAGCCTGCTAGGTTTATAACCTGATTTAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
41083662 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
41083703 TCACCGGCACTTAGCCTGCTAG
1 TCACCGGCACTTAGCCTGCTAG
41083725 ACTTAAAGTC
Statistics
Matches: 136, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 136 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.29
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
Found at i:41084431 original size:23 final size:24
Alignment explanation
Indices: 41084404--41084464 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 24
41084394 ACAAGAATTT
41084404 ATACATATATATA-TTCGAACATG
1 ATACATATATATATTTCGAACATG
41084427 ATACATATATATATTTTCGAACATG
1 ATACATATATATA-TTTCGAACATG
41084452 ATACATATATATA
1 ATACATATATATA
41084465 CATATCATTC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
23 13 0.36
25 23 0.64
ACGTcount: A:0.44, C:0.11, G:0.07, T:0.38
Consensus pattern (24 bp):
ATACATATATATATTTCGAACATG
Found at i:41085514 original size:14 final size:15
Alignment explanation
Indices: 41085495--41085524 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
41085485 ACACGAAATT
41085495 TTCACACA-AATAAA
1 TTCACACATAATAAA
41085509 TTCACACATAATAAA
1 TTCACACATAATAAA
41085524 T
1 T
41085525 AGATAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (15 bp):
TTCACACATAATAAA
Found at i:41091207 original size:41 final size:41
Alignment explanation
Indices: 41091150--41091299 Score: 246
Period size: 41 Copynumber: 3.7 Consensus size: 41
41091140 TTTAACATAT
*
41091150 TCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
* * *
41091191 TCACCGGCACTCAGCCTGCTAGGTTTATAACCTGATTTAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
*
41091232 TCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAGA
1 TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
*
41091273 TCACCGGCACTTAGCCTGCTAGACTTA
1 TCACCGGCACTTAGCCTGCTAGGCTTA
41091300 AAGTCTGAAT
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 101 1.00
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (41 bp):
TCACCGGCACTTAGCCTGCTAGGCTTATAACCTGATTCAGA
Found at i:41092005 original size:24 final size:23
Alignment explanation
Indices: 41091960--41092019 Score: 111
Period size: 24 Copynumber: 2.6 Consensus size: 23
41091950 ACAAGAATTT
41091960 ATACATATATATATTCGAACATG
1 ATACATATATATATTCGAACATG
41091983 ATACATATATATATTTCGAACATG
1 ATACATATATATA-TTCGAACATG
41092007 ATACATATATATA
1 ATACATATATATA
41092020 CATATCATTC
Statistics
Matches: 36, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 13 0.36
24 23 0.64
ACGTcount: A:0.45, C:0.12, G:0.07, T:0.37
Consensus pattern (23 bp):
ATACATATATATATTCGAACATG
Found at i:41105926 original size:30 final size:28
Alignment explanation
Indices: 41105890--41105952 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 28
41105880 AAAAAAGCCA
*
41105890 ATTTTTTTATAAAATTACCGAAATGGGCC
1 ATTTTTTAAT-AAATTACCGAAATGGGCC
* * *
41105919 GATTTTTTAATTATTTACCGGAATGGGCC
1 -ATTTTTTAATAAATTACCGAAATGGGCC
41105948 ATTTT
1 ATTTT
41105953 CCCCGAAATC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 5 0.17
29 15 0.52
30 9 0.31
ACGTcount: A:0.29, C:0.13, G:0.16, T:0.43
Consensus pattern (28 bp):
ATTTTTTAATAAATTACCGAAATGGGCC
Found at i:41106418 original size:125 final size:124
Alignment explanation
Indices: 41106196--41106451 Score: 370
Period size: 125 Copynumber: 2.1 Consensus size: 124
41106186 AAATAGTGGG
** * ***
41106196 AAATCGCTTCTACCAGGATGCTATTTAAGAAGAAATTGTGAAATAGTGGCCTCGTGGACGCGATT
1 AAATCGCTGATACCAGGATGCTATATAAGAAGAAATTGTGAAATAGCACCCTCGTGGACGCGATT
41106261 TCGCTACAGTGGTCATGTAAGAAATAATTTTTTTTTGACGTTTTCTGAGCAAATAGTATA
66 TCGCTACAGTGGTCATGTAAGAAATAATTTTTTTTTGACG-TTTCTGAGCAAATAGTATA
* * * *
41106321 AAATCGCTGATACCAGGATGCTATATGAGGAGAAATTGTGAAATCGCACCCTCGTGGTCGCGATT
1 AAATCGCTGATACCAGGATGCTATATAAGAAGAAATTGTGAAATAGCACCCTCGTGGACGCGATT
* * *
41106386 TCGCTACAGTTGGTCATGTAGGAAATAATTTTTTTTT-ACGTTTCTGAGCAAATAGTGTC
66 TCGCTACAG-TGGTCATGTAAGAAATAATTTTTTTTTGACGTTTCTGAGCAAATAGTATA
41106445 AAATCGC
1 AAATCGC
41106452 GCCCTCGTGG
Statistics
Matches: 117, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
124 24 0.21
125 67 0.57
126 26 0.22
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.32
Consensus pattern (124 bp):
AAATCGCTGATACCAGGATGCTATATAAGAAGAAATTGTGAAATAGCACCCTCGTGGACGCGATT
TCGCTACAGTGGTCATGTAAGAAATAATTTTTTTTTGACGTTTCTGAGCAAATAGTATA
Found at i:41107632 original size:28 final size:27
Alignment explanation
Indices: 41107595--41108808 Score: 989
Period size: 23 Copynumber: 46.6 Consensus size: 27
41107585 TTACCACGTC
* *
41107595 GTTAGGTTAGGGTTTTCAATTAATTAG
1 GTTAGGTTAGGGTTTTTAATTAATTAA
41107622 GTTAGGGTTAGGGTTTTTAATTAAATTAA
1 GTTA-GGTTAGGGTTTTTAATT-AATTAA
* * *
41107651 ATTAGCTTAGAG--TTT--TTAATTAA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
*
41107674 GTTATGTTAGGG--TTT--TTAATTAA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
*
41107697 GTTATGTTAGGGTTTTTAATT-A--AA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
*
41107721 -TTAGGTTAGGGTTTTCAATT-A--AA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
*
41107744 -TTAGGTTAGGGTTTTTAATTAAGT-A
1 GTTAGGTTAGGGTTTTTAATTAATTAA
41107769 G---GGTTAGGG--TTT--TTAATTAA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
*
41107789 GTTATGTTAGGGTTTTTAATTTAATTAA
1 GTTAGGTTAGGGTTTTTAA-TTAATTAA
41107817 GTTAGGTTAGGGTTTTTAATTTAATTAA
1 GTTAGGTTAGGGTTTTTAA-TTAATTAA
41107845 GTTAGGTTA-GG-TTTT--TTAATTAA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
*
41107868 GTTATGTTAGGGTTTTTAATTTAATTAA
1 GTTAGGTTAGGGTTTTTAA-TTAATTAA
41107896 GTTAGGTTAGGGTTTTTAATTTAATTAA
1 GTTAGGTTAGGGTTTTTAA-TTAATTAA
41107924 GTTAGGTTA-GG-TTTT--TTAATTAA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
* * * *
41107947 GTTATGTTAGGGATTTTAATTAAAATAG
1 GTTAGGTTAGGGTTTTTAATT-AATTAA
* * *
41107975 GTTAGGGTTAGGG-TTTTCATGTAAAATAG
1 GTTA-GGTTAGGGTTTTTAAT-T-AATTAA
* *
41108004 GTTAGGGTTGGGGTTTTTAATTAAATTAG
1 GTTA-GGTTAGGGTTTTTAATT-AATTAA
* *
41108033 GTTAGGGTTAGGGTTTTCAATTAAATTAG
1 GTTA-GGTTAGGGTTTTTAATT-AATTAA
*
41108062 GTTAGGGTTAGAGTTTTTAATTAAATTAA
1 GTTA-GGTTAGGGTTTTTAATT-AATTAA
* * *
41108091 ATTAGCTTAGGGTTTTTAATTAAGTTAT
1 GTTAGGTTAGGGTTTTTAATTAA-TTAA
41108119 GTTAGGGTTTTTAGGG--TTT--TTAATTAA
1 GTTA-GG---TTAGGGTTTTTAATTAATTAA
*
41108146 GTTATGTTAGGGTTTTTAATTTAATTAA
1 GTTAGGTTAGGGTTTTTAA-TTAATTAA
*
41108174 GTTAGGTTAGGATTTTTAATTTAATTAA
1 GTTAGGTTAGGGTTTTTAA-TTAATTAA
41108202 GTTAGGTTA-GG-TTTT--TTAATTAA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
*
41108225 GTTATGTTAGGGTTTTTAATTTAATTAA
1 GTTAGGTTAGGGTTTTTAA-TTAATTAA
41108253 GTTAGGTTA-GG-TTTT--TTAATTAA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
*
41108276 GTTATGTTAGGGTTTTTAATT-A--AA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
*
41108300 -TTAGGTTAGGGTTTTTAATTAAATTAG
1 GTTAGGTTAGGGTTTTTAATT-AATTAA
* * *
41108327 GTTAGGGTTAGGGATTTTAATTAAAATAG
1 GTTA-GGTTAGGGTTTTTAATT-AATTAA
* * *
41108356 GTTAGGGTTAGGG-TTTTCATGTAAAATAG
1 GTTA-GGTTAGGGTTTTTAAT-T-AATTAA
* *
41108385 GTTAGGGTTGGGGTTTTTAATTAAATTAG
1 GTTA-GGTTAGGGTTTTTAATT-AATTAA
* * *
41108414 GTTAGGTTAGGGATTTCAATTAAATTAG
1 GTTAGGTTAGGGTTTTTAATT-AATTAA
41108442 GTTAGGGTTAGGGTTTTTAATTAAATTAA
1 GTTA-GGTTAGGGTTTTTAATT-AATTAA
* *
41108471 ATTAGCTTAGGG--TTT--TTAATTAA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
*
41108494 GTTATGTTAGGGTTTTTAATTTAATTAA
1 GTTAGGTTAGGGTTTTTAA-TTAATTAA
41108522 GTTAGGTTAGGG--TTT--TTAATTAA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
*
41108545 GTTATGTTAGGGTTTTTAATTTAATTAA
1 GTTAGGTTAGGGTTTTTAA-TTAATTAA
41108573 GTTAGGTTAGGG--TTT--TTAATTAA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
41108596 GTTAGGTTAGGGTTTTTAATT-A--AA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
41108620 -TTAGGTTAGGGTTTTTAATT-A--AA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
41108643 -TTAGGTTAGGG--TTT--TTAATTAA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
*
41108665 GTTATGTTAGGGTTTTTAATT-A--AA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
*
41108689 -TTAGGTTAGAGTTTTTAATT-A--AA
1 GTTAGGTTAGGGTTTTTAATTAATTAA
* *
41108712 -TTAGGTTAGAGTTTTTAATTAAATTAG
1 GTTAGGTTAGGGTTTTTAATT-AATTAA
*
41108739 GTTAGGGTTAGGGTTTTTAATTAAGT-A
1 GTTA-GGTTAGGGTTTTTAATTAATTAA
*
41108766 G---GGTTAGGGTTTTTAATTAAATTAG
1 GTTAGGTTAGGGTTTTTAATT-AATTAA
41108791 GTTAGGGTTAGGGTTTTT
1 GTTA-GGTTAGGGTTTTT
41108809 TAATCAAATA
Statistics
Matches: 1018, Mismatches: 75, Indels: 186
0.80 0.06 0.15
Matches are distributed among these distances:
19 7 0.01
20 3 0.00
21 6 0.01
22 2 0.00
23 337 0.33
24 24 0.02
25 41 0.04
26 33 0.03
27 33 0.03
28 293 0.29
29 218 0.21
30 15 0.01
32 6 0.01
ACGTcount: A:0.29, C:0.01, G:0.23, T:0.48
Consensus pattern (27 bp):
GTTAGGTTAGGGTTTTTAATTAATTAA
Found at i:41107689 original size:51 final size:52
Alignment explanation
Indices: 41107614--41108808 Score: 876
Period size: 51 Copynumber: 23.0 Consensus size: 52
41107604 GGGTTTTCAA
* * * *
41107614 TTAATTAGGTTAGGGTTAGGGTTTTTAATTAAATTAAATTA-GCTTAGAGTTT
1 TTAATTAAGTTA-GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTT
* *
41107666 TTAATTAAGTTATGTTAGGG--TTT--TT-AATTAAGTTA-TGTTAGGGTTT
1 TTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTT
* *
41107712 TTAATTAAATTAGGTTAGGGTTTTCAATT--A--AA-TTA-GGTTAGGGTTT
1 TTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTT
* * *
41107758 TTAATTAAG-TAGGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTT---TTTAAT
1 TTAATTAAGTTA-GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTT--T
* *
41107809 TTAATTAAGTTAGGTTAGGGTTTTTAATTTAATTAAGTTA-GGTTAGGTTTT
1 TTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTT
* *
41107860 TTAATTAAGTTATGTTAGGGTTTTTAATTTAATTAAGTTA-GGTTAGGGTTTTTAAT
1 TTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGG---TT--T
* *
41107916 TTAATTAAGTTAGGTTA-GG-TTTT--TT-AATTAAGTTA-TGTTAGGGATT
1 TTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTT
* * * *
41107962 TTAATTAAAATAGGTTAGGGTTAGGG-TTTTCATGTAAAATAGGTTAGGGTTGGGGTTT
1 TTAATT---A-A-GTTA-GGTTAGGGTTTTTAAT-TAAATTAAGTTAGGGTTAGGGTTT
* * *
41108020 TTAATTAAATTAGGTTAGGGTTAGGGTTTTCAATTAAATTAGGTTAGGGTTAGAGTTTTT
1 TTAATT--A--A-GTTA-GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAG-G-GTTT
* * * *
41108080 AATTAAATTAAATTAGCTTAGGGTTTTTAATTAAGTTATGTTAGGGTTTTTAGGGTTT
1 --TT-AATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGG---TTAGGGTTT
* * *
41108138 TTAATTAAGTTATGTTAGGGTTTTTAATTTAATTAAGTTA-GGTTAGGATTTTTAAT
1 TTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGG---GTT--T
* * * *
41108194 TTAATTAAGTTAGGTTAGGTTTTTTAATTAAGTTATGTTAGGGTT---TTTAAT
1 TTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTT--T
*
41108245 TTAATTAAGTTAGGTTA-GG-TTTT--TT-AATTAAGTTA-TGTTAGGGTTT
1 TTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTT
* * *
41108291 TTAATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGATT
1 TTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTT
* * * *
41108343 TTAATTAAAATAGGTTAGGGTTAGGG-TTTTCATGTAAAATAGGTTAGGGTTGGGGTTT
1 TTAATT---A-A-GTTA-GGTTAGGGTTTTTAAT-TAAATTAAGTTAGGGTTAGGGTTT
* * *
41108401 TTAATTAAATTAGGTTAGGTTAGGGATTTCAATTAAATTAGGTTAGGGTTAGGGTTTTT
1 TTAATT--A--A-GTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGG--TTT
* * * * *
41108460 AATTAAATTAAATTAGCTTAGGGTTTTTAATTAAGTTATGTTAGGGTT---TTTAAT
1 --TT-AATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTT--T
* * *
41108514 TTAATTAAGTTAGGTTAGGGTTTTTAATTAAGTTATGTTAGGGTT---TTTAAT
1 TTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTT--T
41108565 TTAATTAAGTTAGGTTAGGG--TTT--TT-AATTAAGTTA-GGTTAGGGTTT
1 TTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTT
*
41108611 TTAATTAAATTAGGTTAGGGTTTTTAATT--A--AA-TTA-GGTTAGGGTTT
1 TTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTT
* *
41108657 TTAATTAAGTTATGTTAGGGTTTTTAATT--A--AA-TTA-GGTTAGAGTTT
1 TTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTT
* * *
41108703 TTAATTAAATTAGGTTAGAGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTT
1 TTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTT
*
41108755 TTAATTAAG-TAGGGTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTT
1 TTAATTAAGTTA-GGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTT
41108807 TT
1 TT
41108809 TAATCAAATA
Statistics
Matches: 962, Mismatches: 92, Indels: 178
0.78 0.07 0.14
Matches are distributed among these distances:
45 9 0.01
46 215 0.22
47 12 0.01
48 15 0.02
49 15 0.02
50 14 0.01
51 222 0.23
52 102 0.11
53 9 0.01
54 11 0.01
55 36 0.04
56 57 0.06
57 112 0.12
58 101 0.10
59 11 0.01
60 8 0.01
61 3 0.00
62 6 0.01
63 4 0.00
ACGTcount: A:0.29, C:0.01, G:0.23, T:0.48
Consensus pattern (52 bp):
TTAATTAAGTTAGGTTAGGGTTTTTAATTAAATTAAGTTAGGGTTAGGGTTT
Found at i:41108089 original size:34 final size:29
Alignment explanation
Indices: 41107794--41108807 Score: 539
Period size: 28 Copynumber: 38.4 Consensus size: 29
41107784 ATTAAGTTAT
* * *
41107794 GTTAGGGTTTTTAATTTAATTAAGTTA-G
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* * *
41107822 GTTAGGGTTTTTAATTTAATTAAGTTA-G
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* *
41107850 GTTA-GGTTTT---TT-AATTAAGTTA-T
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* * *
41107873 GTTAGGGTTTTTAATTTAATTAAGTTA-G
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* * *
41107901 GTTAGGGTTTTTAATTTAATTAAGTTA-G
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* *
41107929 GTTA-GGTTTT---TT-AATTAAGTTA-T
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
*
41107952 GTTAGGGATTTT-AATTAAAATAGGTTAGG
1 GTTAGGG-TTTTAAATTAAATTAGGTTAGG
* *
41107981 GTTAGGGTTTT-CATGTAAAATAGGTTAGG
1 GTTAGGGTTTTAAAT-TAAATTAGGTTAGG
* *
41108010 GTTGGGGTTTTTAATTAAATTAGGTTAGG
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
*
41108039 GTTAGGGTTTTCAATTAAATTAGGTTAGG
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* * **
41108068 GTTAGAGTTTTTAATTAAATTAAATTA-G
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* * * *
41108096 CTTAGGGTTTTTAATTAAGTTATGTTAGG
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* *
41108125 GTTTTTAGGG-TTT---TT-AATTAAGTTA-T
1 G---TTAGGGTTTTAAATTAAATTAGGTTAGG
* * *
41108151 GTTAGGGTTTTTAATTTAATTAAGTTA-G
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* * * *
41108179 GTTAGGATTTTTAATTTAATTAAGTTA-G
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* *
41108207 GTTA-GGTTTT---TT-AATTAAGTTA-T
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* * *
41108230 GTTAGGGTTTTTAATTTAATTAAGTTA-G
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* *
41108258 GTTA-GGTTTT---TT-AATTAAGTTA-T
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
*
41108281 GTTAGGGTTTTTAATTAAATTAGGTTAGG
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
41108310 G-T----TTTT-AATTAAATTAGGTTAGG
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
*
41108333 GTTAGGGATTTT-AATTAAAATAGGTTAGG
1 GTTAGGG-TTTTAAATTAAATTAGGTTAGG
* *
41108362 GTTAGGGTTTT-CATGTAAAATAGGTTAGG
1 GTTAGGGTTTTAAAT-TAAATTAGGTTAGG
* *
41108391 GTTGGGGTTTTTAATTAAATTAGGTTA-G
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* *
41108419 GTTAGGGATTTCAATTAAATTAGGTTAGG
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* **
41108448 GTTAGGGTTTTTAATTAAATTAAATTA-G
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* * *
41108476 CTTAGGG-TTT---TT-AATTAAGTTA-T
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* * *
41108499 GTTAGGGTTTTTAATTTAATTAAGTTA-G
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* *
41108527 GTTAGGGTTTTTAATTAAGTTA---T---
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* * *
41108550 GTTAGGGTTTTTAATTTAATTAAGTTA-G
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
* *
41108578 GTTAGGGTTTTTAATTAAGTTAGGTTAGG
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
41108607 G-T----TTTT-AATTAAATTAGGTTAGG
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
41108630 G-T----TTTT-AATTAAATTAGGTTAGG
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
*
41108653 G-T----TTTT-AATTAAGTTA---T---
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
*
41108670 GTTAGGGTTTTTAATTAAATTAGGTTA--
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
*
41108697 G--A--GTTTTTAATTAAATTAGGTTA--
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
*
41108720 G--A--GTTTTTAATTAAATTAGGTTAGG
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
*
41108745 GTTAGGG-TTT---TT-AATTAAG-TAGG
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
*
41108768 GTTAGGGTTTTTAATTAAATTAGGTTAGG
1 GTTAGGGTTTTAAATTAAATTAGGTTAGG
41108797 GTTAGGGTTTT
1 GTTAGGGTTTT
41108808 TTAATCAAAT
Statistics
Matches: 849, Mismatches: 62, Indels: 149
0.80 0.06 0.14
Matches are distributed among these distances:
17 1 0.00
18 1 0.00
20 1 0.00
22 4 0.00
23 233 0.27
24 54 0.06
25 9 0.01
26 3 0.00
27 50 0.06
28 280 0.33
29 200 0.24
30 4 0.00
31 3 0.00
32 6 0.01
ACGTcount: A:0.29, C:0.01, G:0.23, T:0.48
Consensus pattern (29 bp):
GTTAGGGTTTTAAATTAAATTAGGTTAGG
Found at i:41110972 original size:14 final size:15
Alignment explanation
Indices: 41110955--41110988 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
41110945 AATAAATATC
41110955 TAAAAATA-CATAAA
1 TAAAAATATCATAAA
*
41110969 TAAAAATATCTTAAA
1 TAAAAATATCATAAA
41110984 TAAAA
1 TAAAA
41110989 TTTAAAATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 8 0.44
15 10 0.56
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (15 bp):
TAAAAATATCATAAA
Found at i:41111251 original size:52 final size:51
Alignment explanation
Indices: 41111177--41111279 Score: 120
Period size: 52 Copynumber: 2.0 Consensus size: 51
41111167 TTAATATGGA
* * * *
41111177 TTTGGAGATTTTTTGAACGAAATTGAGAG-GATTTTGGAA-GGAATTTGAGAG
1 TTTGGAGAATTTTGGAACGAAATTAAGAGAAATTTT-GAAGGGAA-TTGAGAG
*
41111228 TTTGAGAGAATTTTGGAAGGAAATTAAGAGAAATTTTGAAGGGAATTGAGAG
1 TTTG-GAGAATTTTGGAACGAAATTAAGAGAAATTTTGAAGGGAATTGAGAG
41111280 AATTTTTGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
51 4 0.09
52 31 0.70
53 9 0.20
ACGTcount: A:0.36, C:0.01, G:0.31, T:0.32
Consensus pattern (51 bp):
TTTGGAGAATTTTGGAACGAAATTAAGAGAAATTTTGAAGGGAATTGAGAG
Found at i:41111257 original size:22 final size:22
Alignment explanation
Indices: 41111229--41111320 Score: 116
Period size: 22 Copynumber: 4.2 Consensus size: 22
41111219 ATTTGAGAGT
41111229 TTGAGAGAATTTTGGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
* *
41111251 TTAAGAGAAATTTT-GAAGGGAA
1 TTGAGAG-AATTTTGGAAGGAAA
*
41111273 TTGAGAGAATTTTTGAAAGG-AA
1 TTGAGAGAA-TTTTGGAAGGAAA
*
41111295 TTGAGAGAATTTTTGAAGGAAA
1 TTGAGAGAATTTTGGAAGGAAA
41111317 TTGA
1 TTGA
41111321 TATTGAATTT
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
21 10 0.17
22 40 0.67
23 10 0.17
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.30
Consensus pattern (22 bp):
TTGAGAGAATTTTGGAAGGAAA
Found at i:41111278 original size:44 final size:44
Alignment explanation
Indices: 41111229--41111320 Score: 132
Period size: 44 Copynumber: 2.1 Consensus size: 44
41111219 ATTTGAGAGT
* *
41111229 TTGAGAGAA-TTTTGGAAGGAAATTAAGAGAAATTTTGAAGGGAA
1 TTGAGAGAATTTTTGAAAGG-AATTAAGAGAAATTTTGAAGGAAA
* *
41111273 TTGAGAGAATTTTTGAAAGGAATTGAGAGAATTTTTGAAGGAAA
1 TTGAGAGAATTTTTGAAAGGAATTAAGAGAAATTTTGAAGGAAA
41111317 TTGA
1 TTGA
41111321 TATTGAATTT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
44 34 0.79
45 9 0.21
ACGTcount: A:0.41, C:0.00, G:0.28, T:0.30
Consensus pattern (44 bp):
TTGAGAGAATTTTTGAAAGGAATTAAGAGAAATTTTGAAGGAAA
Found at i:41116897 original size:22 final size:22
Alignment explanation
Indices: 41116866--41116908 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
41116856 AGCAAAGATC
* * *
41116866 AAAACGTGCTACGAAGTAGAGG
1 AAAACATGCTACAAAGCAGAGG
41116888 AAAACATGCTACAAAGCAGAG
1 AAAACATGCTACAAAGCAGAG
41116909 TGATTTTTGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.47, C:0.16, G:0.26, T:0.12
Consensus pattern (22 bp):
AAAACATGCTACAAAGCAGAGG
Found at i:41119949 original size:21 final size:19
Alignment explanation
Indices: 41119912--41119986 Score: 114
Period size: 19 Copynumber: 3.8 Consensus size: 19
41119902 AATCATATCT
41119912 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
* *
41119931 TCCAAGATTGCATATATCATG
1 TCTAAGATTGC--ATATCATA
41119952 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
41119971 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
41119987 CTTGAAGATT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 33 0.66
21 17 0.34
ACGTcount: A:0.35, C:0.17, G:0.12, T:0.36
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:41124937 original size:20 final size:20
Alignment explanation
Indices: 41124909--41124955 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
41124899 TAGATACAAA
* *
41124909 TTTAATTTT-AGTTATTTTAT
1 TTTATTTTTCAGTTA-TTAAT
*
41124929 TTTATTTTTCGGTTATTAAT
1 TTTATTTTTCAGTTATTAAT
41124949 TTTATTT
1 TTTATTT
41124956 CAATTTCTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
20 19 0.83
21 4 0.17
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.70
Consensus pattern (20 bp):
TTTATTTTTCAGTTATTAAT
Found at i:41130498 original size:22 final size:21
Alignment explanation
Indices: 41130479--41130525 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
41130469 TTTTAAAATA
41130479 AAATAAACCTAAACTAAAAACCT
1 AAATAAA-CTAAACTAAAAA-CT
* *
41130502 AAATATACTAAACTAAAACCT
1 AAATAAACTAAACTAAAAACT
41130523 AAA
1 AAA
41130526 AATGGCTTCG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 11 0.50
23 6 0.27
ACGTcount: A:0.62, C:0.19, G:0.00, T:0.19
Consensus pattern (21 bp):
AAATAAACTAAACTAAAAACT
Found at i:41132638 original size:29 final size:29
Alignment explanation
Indices: 41132599--41132791 Score: 210
Period size: 29 Copynumber: 6.7 Consensus size: 29
41132589 TCCTTTCCGA
*
41132599 AGATAGCCACAAA-GCATTCCTTTTAACAG
1 AGATCGCCACAAAGGC-TTCCTTTTAACAG
* *
41132628 TGATAGCCACAAAGGCTTCCTTTTAACAG
1 AGATCGCCACAAAGGCTTCCTTTTAACAG
* * *
41132657 AGATCCCCCCAAAGGCTTCCTTATAACAG
1 AGATCGCCACAAAGGCTTCCTTTTAACAG
* *
41132686 AGATCGCCATAAAGGCTTCCTTATAACAG
1 AGATCGCCACAAAGGCTTCCTTTTAACAG
* * *
41132715 AGATCGCCATAAAGACATT-CTTTTAATAG
1 AGATCGCCACAAAGGC-TTCCTTTTAACAG
* * *
41132744 AGATCGCCACAAGGGCTTCCTTATAATAG
1 AGATCGCCACAAAGGCTTCCTTTTAACAG
* *
41132773 AGGTCACCACAAAGGCTTC
1 AGATCGCCACAAAGGCTTC
41132792 ATTTCAAAGG
Statistics
Matches: 142, Mismatches: 19, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
28 2 0.01
29 136 0.96
30 4 0.03
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.24
Consensus pattern (29 bp):
AGATCGCCACAAAGGCTTCCTTTTAACAG
Found at i:41134067 original size:21 final size:21
Alignment explanation
Indices: 41134009--41134095 Score: 95
Period size: 21 Copynumber: 4.1 Consensus size: 21
41133999 CTTGATCAGT
*
41134009 ATACGATACAT-AAGTGCCTG
1 ATACGACACATAAAGTGCCTG
* ** *
41134029 AAACGACACACGAGGTGCCTG
1 ATACGACACATAAAGTGCCTG
*
41134050 ATACGACACATAAAGTGCATGAG
1 ATACGACACATAAAGTGCCT--G
41134073 ATACGACACATAAAGTGCCTG
1 ATACGACACATAAAGTGCCTG
41134094 AT
1 AT
41134096 CGGCAGAGCC
Statistics
Matches: 54, Mismatches: 10, Indels: 5
0.78 0.14 0.07
Matches are distributed among these distances:
20 8 0.15
21 26 0.48
23 20 0.37
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (21 bp):
ATACGACACATAAAGTGCCTG
Found at i:41134091 original size:44 final size:41
Alignment explanation
Indices: 41134009--41134095 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 41
41133999 CTTGATCAGT
* * * *
41134009 ATACGATACATAAGTGCCTGAAACGACACACGAGGTGCCTG
1 ATACGACACATAAGTGCATGAAACGACACACAAAGTGCCTG
*
41134050 ATACGACACATAAAGTGCATGAGATACGACACATAAAGTGCCTG
1 ATACGACACAT-AAGTGCATGA-A-ACGACACACAAAGTGCCTG
41134094 AT
1 AT
41134096 CGGCAGAGCC
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
41 10 0.26
42 9 0.24
43 1 0.03
44 18 0.47
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.18
Consensus pattern (41 bp):
ATACGACACATAAGTGCATGAAACGACACACAAAGTGCCTG
Found at i:41145781 original size:113 final size:113
Alignment explanation
Indices: 41145583--41145793 Score: 404
Period size: 113 Copynumber: 1.9 Consensus size: 113
41145573 ATTTTATTAA
41145583 TCAAATGAGTCCTTCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
1 TCAAATGAGTCCTTCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
41145648 ATGCGTAAGTTGTTCAACTACCTTTATTAATACCTTTTATTAAGTTGT
66 ATGCGTAAGTTGTTCAACTACCTTTATTAATACCTTTTATTAAGTTGT
*
41145696 TCAAATGAGTCCTTCAATTTGAAGTGCCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
1 TCAAATGAGTCCTTCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
*
41145761 ATGCTTAAGTTGTTCAACTACCTTTATTAATAC
66 ATGCGTAAGTTGTTCAACTACCTTTATTAATAC
41145794 AATGAATCTT
Statistics
Matches: 96, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
113 96 1.00
ACGTcount: A:0.32, C:0.19, G:0.11, T:0.37
Consensus pattern (113 bp):
TCAAATGAGTCCTTCAATTTGAAGTACCATTTTCATCAATAACCTGTCCAATGAAACTGAATTCA
ATGCGTAAGTTGTTCAACTACCTTTATTAATACCTTTTATTAAGTTGT
Found at i:41146040 original size:18 final size:18
Alignment explanation
Indices: 41146013--41146047 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
41146003 GAAATGGTAT
41146013 TTGTTATTGTTATTATTA
1 TTGTTATTGTTATTATTA
* *
41146031 TTGTTGTTGTTGTTATT
1 TTGTTATTGTTATTATT
41146048 TTGCGTTGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.17, T:0.69
Consensus pattern (18 bp):
TTGTTATTGTTATTATTA
Found at i:41152063 original size:17 final size:18
Alignment explanation
Indices: 41152038--41152071 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
41152028 TTTTTATTAA
41152038 TTTATATTTTTAAATATT
1 TTTATATTTTTAAATATT
*
41152056 TTTA-ATTTTTTAATAT
1 TTTATATTTTTAAATAT
41152072 ATGTTTGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (18 bp):
TTTATATTTTTAAATATT
Found at i:41155563 original size:10 final size:10
Alignment explanation
Indices: 41155541--41155573 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
41155531 TGCATGTATT
41155541 CAAA-ACTAC
1 CAAAGACTAC
*
41155550 CAAAGACTAT
1 CAAAGACTAC
41155560 CAAAGACTAC
1 CAAAGACTAC
41155570 CAAA
1 CAAA
41155574 CTTCTTTCCA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 4 0.19
10 17 0.81
ACGTcount: A:0.55, C:0.27, G:0.06, T:0.12
Consensus pattern (10 bp):
CAAAGACTAC
Found at i:41155664 original size:14 final size:15
Alignment explanation
Indices: 41155636--41155673 Score: 53
Period size: 14 Copynumber: 2.6 Consensus size: 15
41155626 ATATTTCACC
41155636 TCCTTCATT-CTCTTT
1 TCCTTC-TTCCTCTTT
41155651 TCC-TCTTCCTCTTT
1 TCCTTCTTCCTCTTT
41155665 TCCTTCTTC
1 TCCTTCTTC
41155674 TTGCCTCTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
13 2 0.10
14 11 0.52
15 8 0.38
ACGTcount: A:0.03, C:0.39, G:0.00, T:0.58
Consensus pattern (15 bp):
TCCTTCTTCCTCTTT
Found at i:41159459 original size:23 final size:23
Alignment explanation
Indices: 41159433--41159484 Score: 59
Period size: 23 Copynumber: 2.3 Consensus size: 23
41159423 TTATTTTACT
41159433 TTTTCAAAAATTTAGAATTTAAA
1 TTTTCAAAAATTTAGAATTTAAA
** * *
41159456 TTTTTTAATATTTAGATTTTAAA
1 TTTTCAAAAATTTAGAATTTAAA
*
41159479 ATTTCA
1 TTTTCA
41159485 TTAAGATGGT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.40, C:0.04, G:0.04, T:0.52
Consensus pattern (23 bp):
TTTTCAAAAATTTAGAATTTAAA
Found at i:41160700 original size:5 final size:5
Alignment explanation
Indices: 41160690--41160727 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
41160680 TTGGTGCTTG
*
41160690 AGCTA AGCTA AGCTA AGCTA AGCTA AGCAA AGC-A AGCT
1 AGCTA AGCTA AGCTA AGCTA AGCTA AGCTA AGCTA AGCT
41160728 TCTGAATTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
4 4 0.13
5 27 0.87
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.16
Consensus pattern (5 bp):
AGCTA
Found at i:41163017 original size:2 final size:2
Alignment explanation
Indices: 41163012--41163044 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
41163002 GAAAAAAAGG
41163012 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
41163045 CCCTCAAGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:41167349 original size:44 final size:44
Alignment explanation
Indices: 41167294--41168205 Score: 869
Period size: 44 Copynumber: 20.7 Consensus size: 44
41167284 TCAGTCTGCC
**
41167294 TCACTACCAATATAAAAAGACAGGATCTGCTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * ** *
41167339 TCACGCCAATACATGAAGATAATATCTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * * *
41167383 TCACGCCAATACATGAAGATAAGA-CTTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAGGATC-TGCTATCTTCGATCTACT
* * * * *
41167427 TCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTTGATCCACT
1 TC-ACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
*
41167471 TC-CTACCAATATAGGAAGACAGGATCTGTTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * *
41167515 TCACGCCAATATATGAAGAC-GAGATCTGCTTTCTTCGATCCACT
1 TCACACCAATATAGGAAGACAG-GATCTGCTATCTTCGATCTACT
* *
41167559 TC-CTACCAATATAGGAAGATAGGATCTGCTATCTTCGATCCACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
*
41167603 TC-CTACCAATATAGGAAGACAGAATCTGCTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * *
41167647 TCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * *
41167691 TCGCCACCAATATGGGAAGACAAGATCTGC-ATCTTCGATCCACT
1 TC-ACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* *
41167735 TC-CTACCAATATAGGAAAACAGGATCTACTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * *
41167779 TCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * *
41167823 TCACCACCAATATGGGAAGGCAAGATCTAC-ATCTTCGATCCACT
1 TCA-CACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
41167867 TC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* ** * **
41167911 TCACGCTGATACATTAAAGACAGGATCTGCTATCTTCGATCTACT
1 TCACACCAATATA-GGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * * *
41167956 TCACGCCGATACATGAAGACAAGATCTGCTTTCTTCGATCTACT
1 TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * * *
41168000 TCCCCACCAATATGGGAAGGCAAGATCTAC-ATCTTCGATCCACT
1 T-CACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
41168044 TC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
1 TCAC-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * * * * *
41168088 TCACGCCGATACATGAAGACAGGATCTGCTTTCTTCTATCTACT
1 TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
* * ** * *
41168132 TCGCCACCAATATGGGAAGACAATATCTGC-ATCTTTGATCCACT
1 TC-ACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
**
41168176 TCTTACCAATATAGGAAGACAGGATCTGCT
1 TCACACCAATATAGGAAGACAGGATCTGCT
41168206 TTTTTTGTGA
Statistics
Matches: 721, Mismatches: 121, Indels: 51
0.81 0.14 0.06
Matches are distributed among these distances:
42 4 0.01
43 111 0.15
44 454 0.63
45 151 0.21
46 1 0.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (44 bp):
TCACACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACT
Found at i:41167512 original size:132 final size:131
Alignment explanation
Indices: 41167310--41168207 Score: 1014
Period size: 132 Copynumber: 6.8 Consensus size: 131
41167300 CCAATATAAA
* * * * * * ** *
41167310 AAGACAGGATCTGCTATCTTCGATCTACTTCAC-GCCAATACATGAAGATAATATCTGCTTTCTT
1 AAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTT
*
41167374 CGATCTACTTCACGCCAATACATGAAGATAAGA-CTTGCTTTCTTCGATCTACTTCGCCACCAAT
64 CGATCTACTTCACGCCAATACATGAAGACAAGATC-TGCTTTCTTCGATCTACTTC-CCACCAAT
41167438 ATGGG
127 ATGGG
* *
41167443 AAGACAAGATCTGCATCTTTGATCCACTTCCTACCAATATAGGAAGACAGGATCTGTTATCTTCG
1 AAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCG
* * * * *
41167508 ATCTACTTCACGCCAATATATGAAGACGAGATCTGCTTTCTTCGATCCACTTCCTACCAATATAG
66 ATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCCCACCAATATGG
41167573 G
131 G
* * *
41167574 AAGATAGGATCTGCTATCTTCGATCCACTTCCTACCAATATAGGAAGACAGAATCTGCTATCTTC
1 AAGACAAGATCTGC-ATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTC
41167639 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAATAT
65 GATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-CCACCAATAT
41167704 GGG
129 GGG
* *
41167707 AAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAAACAGGATCTACTATCTTCG
1 AAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCG
41167772 ATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCACCACCAATATG
66 ATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTC-CCACCAATATG
41167837 GG
130 GG
* *
41167839 AAGGCAAGATCTACATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCG
1 AAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCG
** * * * * * * **
41167904 ATCTACTTCACGCTGATACATTAAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCGATACA
66 ATCTACTTCACGCCAATACA-TGAAGACAAGATCTGCTTTCTTCGATCTACTTCCCACCAATATG
*
41167969 TG
130 GG
* * * * * * *
41167971 AAGACAAGATCTGCTTTCTTCGATCTACTTCCCCACCAATATGGGAAGGCAAGATCTAC-ATCTT
1 AAGACAAGATCTGC-ATCTTCGATCCACTT-CCTACCAATATAGGAAGACAGGATCTGCTATCTT
* * * * * * * * *
41168035 CGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCCGATA
64 CGATCTACTTCAC-GCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCCCACCAATA
***
41168099 CATG
128 TGGG
* * * * * * **
41168103 AAGACAGGATCTGCTTTCTTCTATCTACTTCGCCACCAATATGGGAAGACAATATCTGC-ATCTT
1 AAGACAAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTT
* * *** * * *
41168167 TGATCCACTTCTTACCAATATAGGAAGACAGGATCTGCTTT
64 CGATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTT
41168208 TTTTGTGAGA
Statistics
Matches: 683, Mismatches: 72, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
131 25 0.04
132 535 0.78
133 100 0.15
134 23 0.03
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (131 bp):
AAGACAAGATCTGCATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCG
ATCTACTTCACGCCAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCCCACCAATATGG
G
Found at i:41168855 original size:25 final size:26
Alignment explanation
Indices: 41168817--41168865 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
41168807 GTGTCTTGAA
41168817 AAGAAAAAGATATT-CAAGAACAATG
1 AAGAAAAAGATATTACAAGAACAATG
41168842 AAGAATAAAG-TATTACAAGAACAA
1 AAGAA-AAAGATATTACAAGAACAA
41168866 ACAAATTCTG
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.61, C:0.08, G:0.14, T:0.16
Consensus pattern (26 bp):
AAGAAAAAGATATTACAAGAACAATG
Found at i:41186120 original size:4 final size:4
Alignment explanation
Indices: 41186101--41186140 Score: 62
Period size: 4 Copynumber: 9.8 Consensus size: 4
41186091 AATTGCATAG
*
41186101 AAAT AATAT GAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AA-AT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
41186141 AATAGACATG
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
4 30 0.91
5 3 0.09
ACGTcount: A:0.72, C:0.00, G:0.03, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:41194940 original size:14 final size:15
Alignment explanation
Indices: 41194921--41194965 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
41194911 TATAGTGGAG
*
41194921 GCAAAAAAG-AAGAA
1 GCAAAAAAGCAAAAA
41194935 GCAAAAAAGCAAAAA
1 GCAAAAAAGCAAAAA
* *
41194950 ACAAAAAAACAAAAA
1 GCAAAAAAGCAAAAA
41194965 G
1 G
41194966 AGAAAATAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
14 9 0.35
15 17 0.65
ACGTcount: A:0.76, C:0.11, G:0.13, T:0.00
Consensus pattern (15 bp):
GCAAAAAAGCAAAAA
Found at i:41195416 original size:45 final size:41
Alignment explanation
Indices: 41195362--41195471 Score: 116
Period size: 45 Copynumber: 2.6 Consensus size: 41
41195352 TTTGGTTCGC
*
41195362 TGTATTGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTT
1 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGG-T
* * ***
41195404 GAATGTAATGGAATAGAGGCGTAATAG-TAATCTTGTGTTTGGT
1 ---TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
41195447 TG-AATGGAATAGAGGTGTAATAGCA
1 TGTAATGGAATAGAGGTGTAATAGCA
41195472 TAATGGAAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
39 20 0.36
40 2 0.04
43 1 0.02
44 11 0.20
45 22 0.39
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (41 bp):
TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGT
Found at i:41195638 original size:18 final size:17
Alignment explanation
Indices: 41195617--41195651 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
41195607 TTATTATTAA
*
41195617 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
41195635 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
41195652 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:41195705 original size:157 final size:157
Alignment explanation
Indices: 41195504--41195786 Score: 523
Period size: 157 Copynumber: 1.8 Consensus size: 157
41195494 TAGAATACCC
*
41195504 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATT-
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
*
41195568 ATTATCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAA
66 ATT-TCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAA
41195633 ATATATAATTTAATAAAATTCTTAATAA
130 ATATATAATTTAATAAAATTCTTAATAA
*
41195661 TTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
41195726 ATTTCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATT
66 ATTTCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATT
41195787 TAATAAAATT
Statistics
Matches: 122, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
157 119 0.98
158 3 0.02
ACGTcount: A:0.43, C:0.03, G:0.06, T:0.48
Consensus pattern (157 bp):
TTAGCAGAAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTA
ATTTCAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAA
TATATAATTTAATAAAATTCTTAATAA
Found at i:41195902 original size:18 final size:17
Alignment explanation
Indices: 41195881--41195915 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
41195871 TTATTATTAA
*
41195881 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
41195899 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
41195916 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:41195902 original size:59 final size:59
Alignment explanation
Indices: 41195837--41196025 Score: 181
Period size: 59 Copynumber: 3.2 Consensus size: 59
41195827 CTCAAATCAT
41195837 AATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATTAA
1 AATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATTAA
* * * * * * * * *
41195896 AATATATAAT-TTAATAAAATTCTTAA-TAA-TTAA-TATTCTTATATGA-ATTTACTCAAATCA
1 AATATATGATACT-GTAAAA-TATAAATTAACATAATTATTATTAAAT-ATATTT--T--AATTA
*
41195956 T
59 A
*
41195957 AATATATGATACTGTAAAATATAAATTAACATAATTATTGTTAAATATATTTTAATTAA
1 AATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATTAA
41196016 AATATATGAT
1 AATATATGAT
41196026 TTAATAAAAT
Statistics
Matches: 98, Mismatches: 20, Indels: 24
0.69 0.14 0.17
Matches are distributed among these distances:
57 13 0.13
58 5 0.05
59 32 0.33
60 8 0.08
61 22 0.22
62 5 0.05
63 13 0.13
ACGTcount: A:0.49, C:0.05, G:0.04, T:0.43
Consensus pattern (59 bp):
AATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTAATTAA
Found at i:41196047 original size:120 final size:120
Alignment explanation
Indices: 41195769--41196036 Score: 500
Period size: 120 Copynumber: 2.2 Consensus size: 120
41195759 CATAATTATT
41195769 ATTAAATATATTATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAT
1 ATTAAA-ATA-TATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAAT
41195834 CATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTA
64 CATAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTA
41195891 ATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCA
1 ATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCA
*
41195956 TAATATATGATACTGTAAAATATAAATTAACATAATTATTGTTAAATATATTTTA
66 TAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTA
*
41196011 ATTAAAATATATGATTTAATAAAATT
1 ATTAAAATATATAATTTAATAAAATT
41196037 TAAAATAATT
Statistics
Matches: 144, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
120 135 0.94
121 3 0.02
122 6 0.04
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.44
Consensus pattern (120 bp):
ATTAAAATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCA
TAATATATGATACTGTAAAATATAAATTAACATAATTATTATTAAATATATTTTA
Found at i:41196128 original size:91 final size:91
Alignment explanation
Indices: 41196033--41196259 Score: 246
Period size: 91 Copynumber: 2.5 Consensus size: 91
41196023 GATTTAATAA
* * * *
41196033 AATTT-AAAATAATT-ATAACTAATAAATTATATTTTATGAATTTGTATAATTTTAAATAA-TAA
1 AATTTCAAAA-AATTCATAA-TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAA
*
41196095 TTATTACATATAATTTAATAATAATATAT
64 -TATTAAATATAATTTAATAATAATATAT
* * * * *
41196124 AATTTCAGAAAATTCTTGATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATA
1 AATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATA
* *
41196189 TTAAATATAATTTAATAGTGATATAT
66 TTAAATATAATTTAATAATAATATAT
* * *
41196215 AATTTCATAAAATTCTTAATAATAAAATGT-TCTTATATGAATTTA
1 AATTTCAAAAAATTCATAATAAT-AAAT-TATATTATATGAATTTA
41196260 CTAAAATCAA
Statistics
Matches: 117, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
91 89 0.76
92 27 0.23
93 1 0.01
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (91 bp):
AATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAATA
TTAAATATAATTTAATAATAATATAT
Found at i:41196234 original size:47 final size:46
Alignment explanation
Indices: 41196102--41196240 Score: 117
Period size: 47 Copynumber: 3.0 Consensus size: 46
41196092 TAATTATTAC
* * *
41196102 ATATAATTTAATAATAATATATAATTTCAGAAAATTCTTGATAATAA
1 ATATAATTTAAT-ATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
41196149 AT-T--TTCTTATATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
41196193 ATATAATTTAATAGTGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATA-TGATATATAATTTCATAAAATTCTTAATAATAA
41196240 A
1 A
41196241 ATGTTCTTAT
Statistics
Matches: 68, Mismatches: 15, Indels: 18
0.67 0.15 0.18
Matches are distributed among these distances:
44 19 0.28
45 13 0.19
46 14 0.21
47 22 0.32
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.43
Consensus pattern (46 bp):
ATATAATTTAATATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:41198945 original size:18 final size:18
Alignment explanation
Indices: 41198922--41198963 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
41198912 GACCTAAAAT
41198922 TAATTGTTGGTGTATGTA
1 TAATTGTTGGTGTATGTA
41198940 TAATTGTTGGTGTATGTA
1 TAATTGTTGGTGTATGTA
41198958 TAATTG
1 TAATTG
41198964 ACCTAAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (18 bp):
TAATTGTTGGTGTATGTA
Found at i:41199093 original size:37 final size:37
Alignment explanation
Indices: 41199038--41199124 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 37
41199028 ATATAAATAT
* * *
41199038 ATTGATTAGTTCATTAAAGCATGTTCAAAGTCCT-CAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGT-CTGAAC
*
41199075 ATTGATTAGTTTAATAAAGCATGTTCAAAGTTTGAAC
1 ATTGATTAGTTTAATAAAGCATGTTCAAAGTCTGAAC
41199112 ATTGATTAGTTTA
1 ATTGATTAGTTTA
41199125 TTTATTTATG
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
36 1 0.02
37 44 0.98
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.39
Consensus pattern (37 bp):
ATTGATTAGTTTAATAAAGCATGTTCAAAGTCTGAAC
Found at i:41200383 original size:71 final size:69
Alignment explanation
Indices: 41200244--41200385 Score: 187
Period size: 71 Copynumber: 2.0 Consensus size: 69
41200234 AATAAAGTTC
* *
41200244 CAGTTTCATATTCTACTGACTAACAAATCAAGAACAATTTCCAGCAAACAATCAAAACAACTGCC
1 CAGTTTCATATTCTACTCACTAACAAATAAAGAACAATTTCCAGCAAACAATCAAAACAACTGCC
41200309 AGAA
66 AGAA
* * * * *
41200313 CAGTTTCATCTTCTACTCACTAACAAACTAAAATAACATTTTCCAGCAGACTATCAAAACAA-TG
1 CAGTTTCATATTCTACTCACTAACAAA-T-AAAGAACAATTTCCAGCAAACAATCAAAACAACTG
41200377 TCCAGAA
64 -CCAGAA
41200384 CA
1 CA
41200386 AACCAACAAA
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
69 25 0.40
70 3 0.05
71 35 0.56
ACGTcount: A:0.43, C:0.25, G:0.08, T:0.24
Consensus pattern (69 bp):
CAGTTTCATATTCTACTCACTAACAAATAAAGAACAATTTCCAGCAAACAATCAAAACAACTGCC
AGAA
Found at i:41201038 original size:37 final size:37
Alignment explanation
Indices: 41200983--41201105 Score: 158
Period size: 36 Copynumber: 3.3 Consensus size: 37
41200973 CAGAAACTGT
* *
41200983 GAGCAAATCGGCCGAAAAAGAAAAGAAAAGAAACGGGGG
1 GAGCAAATCGG-CAAAAAAGAAAAGAAAAGAAAC-GAGG
* *
41201022 GAGCAAATCGGCAAAAAAGAAAAGAAAATAAAC-TGG
1 GAGCAAATCGGCAAAAAAGAAAAGAAAAGAAACGAGG
* *
41201058 GAGCAAATCGGCAGAAAAGAAAAGCAAAGAAACGAGG
1 GAGCAAATCGGCAAAAAAGAAAAGAAAAGAAACGAGG
*
41201095 AAGCAAATCGG
1 GAGCAAATCGG
41201106 ATGAAGGTAG
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
36 32 0.43
37 12 0.16
38 20 0.27
39 11 0.15
ACGTcount: A:0.54, C:0.13, G:0.28, T:0.05
Consensus pattern (37 bp):
GAGCAAATCGGCAAAAAAGAAAAGAAAAGAAACGAGG
Found at i:41201479 original size:5 final size:5
Alignment explanation
Indices: 41201467--41201521 Score: 51
Period size: 5 Copynumber: 10.8 Consensus size: 5
41201457 TTCACTTGAA
* *
41201467 AAAAG AAATG AAAAG AAAAAAG AAAAG AAAAG AAAA- ATGAA- AAAAG
1 AAAAG AAAAG AAAAG --AAAAG AAAAG AAAAG AAAAG A-AAAG AAAAG
41201513 AAAAG AAAA
1 AAAAG AAAA
41201522 TGAGAGGCTA
Statistics
Matches: 42, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
4 3 0.07
5 34 0.81
7 5 0.12
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (5 bp):
AAAAG
Found at i:41201480 original size:12 final size:12
Alignment explanation
Indices: 41201476--41201521 Score: 67
Period size: 12 Copynumber: 3.8 Consensus size: 12
41201466 AAAAAGAAAT
41201476 GAAAAGAAAAAA
1 GAAAAGAAAAAA
41201488 GAAAAGAAAAGAA
1 GAAAAGAAAA-AA
*
41201501 -AAATGAAAAAA
1 GAAAAGAAAAAA
41201512 GAAAAGAAAA
1 GAAAAGAAAA
41201522 TGAGAGGCTA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
11 2 0.07
12 26 0.87
13 2 0.07
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.02
Consensus pattern (12 bp):
GAAAAGAAAAAA
Found at i:41201486 original size:17 final size:17
Alignment explanation
Indices: 41201464--41201521 Score: 80
Period size: 17 Copynumber: 3.3 Consensus size: 17
41201454 TACTTCACTT
*
41201464 GAAAAAAGAAATGAAAA
1 GAAAAAAGAAAAGAAAA
41201481 GAAAAAAGAAAAGAAAA
1 GAAAAAAGAAAAGAAAA
*
41201498 GAAAAATGAAAAAAGAAAA
1 GAAAAA--AGAAAAGAAAA
41201517 GAAAA
1 GAAAA
41201522 TGAGAGGCTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
17 22 0.59
19 15 0.41
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.03
Consensus pattern (17 bp):
GAAAAAAGAAAAGAAAA
Found at i:41201491 original size:24 final size:25
Alignment explanation
Indices: 41201464--41201524 Score: 67
Period size: 24 Copynumber: 2.6 Consensus size: 25
41201454 TACTTCACTT
41201464 GAAAAAAGAAATGAAAA-GAAAAAA
1 GAAAAAAGAAATGAAAATGAAAAAA
*
41201488 G--AAAAGAAAAGAAAAATGAAAAAA
1 GAAAAAAGAAATG-AAAATGAAAAAA
*
41201512 GAAAAGA-AAATGA
1 GAAAAAAGAAATGA
41201525 GAGGCTAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 8
0.73 0.07 0.20
Matches are distributed among these distances:
22 9 0.30
23 4 0.13
24 10 0.33
25 4 0.13
26 3 0.10
ACGTcount: A:0.77, C:0.00, G:0.18, T:0.05
Consensus pattern (25 bp):
GAAAAAAGAAATGAAAATGAAAAAA
Found at i:41202820 original size:50 final size:50
Alignment explanation
Indices: 41202766--41203161 Score: 182
Period size: 50 Copynumber: 7.9 Consensus size: 50
41202756 TTACTCATAC
*
41202766 CCCTGAGGTTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTT
1 CCCTGAGGTTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * * * * *
41202816 CCCTG-GCGATGCAGTGAAACAGATTGAAGCTACAACGGCAAATCTT-GTT
1 CCCTGAG-GTTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* ** * *
41202865 CCCCGACATTGCAATTTAAAAGATTGAAGCCACAACGGTGAATCTTACTTT
1 CCCTGAGGTTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTAC-TT
* * * ** * * * * *
41202916 CCCTG-GCGGTGCAGTGGAGCAA-ATTAAAGCTACGACGGTGAATCTTGCTT
1 CCCTGAG-GTTGCAAT-TAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
** * * * *
41202966 -CCTCGAAATTGTAATTTAAAATATTGAAGCCGCAACGGCGAATCTTACTT
1 CCCT-GAGGTTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* * * ** ** * ** * *
41203016 CTCT--GGTAGTACAGTGGAGCAGATTAAAGATACGACGGCGAATCTTGCTT
1 CCCTGAGGT--TGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
** * *
41203066 -CCTCGATATTGCAATTTAAAAGATTGAAGCCATAACGGCGAATCTTACTT
1 CCCT-GAGGTTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
* ** * *
41203116 CCCTG-GCAG-TGCAGTGGAACAGATTGAAGCTACAACGGCGAATCTT
1 CCCTGAG--GTTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTT
41203162 GTTCCCCGAT
Statistics
Matches: 240, Mismatches: 88, Indels: 36
0.66 0.24 0.10
Matches are distributed among these distances:
48 1 0.00
49 44 0.18
50 154 0.64
51 38 0.16
52 3 0.01
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (50 bp):
CCCTGAGGTTGCAATTAAAAAGATTGAAGCCACAACGGCGAATCTTACTT
Found at i:41202893 original size:49 final size:51
Alignment explanation
Indices: 41202774--41202914 Score: 153
Period size: 49 Copynumber: 2.8 Consensus size: 51
41202764 ACCCCTGAGG
* * * *
41202774 TTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTGGCGA
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCCGACGA
* * * * *
41202825 -TGCAGTGAAACAGATTGAAGCTACAACGGCAAATCTT-GTTCCCCGAC-A
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCCGACGA
* **
41202873 TTGCAATTTAAAAGATTGAAGCCACAACGGTGAATCTTACTT
1 TTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTT
41202915 TCCCTGGCGG
Statistics
Matches: 71, Mismatches: 17, Indels: 5
0.76 0.18 0.05
Matches are distributed among these distances:
48 1 0.01
49 37 0.52
50 33 0.46
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.25
Consensus pattern (51 bp):
TTGCAATTAAAAAGATTGAAGCCACAACGGCAAATCTTACTTCCCCGACGA
Found at i:41203059 original size:100 final size:99
Alignment explanation
Indices: 41202774--41203166 Score: 518
Period size: 100 Copynumber: 3.9 Consensus size: 99
41202764 ACCCCTGAGG
* * *
41202774 TTGCAATTAAAAAGATTGAAGCCACAACGACGAATCTTACTTCCCTGGC-GATGCAGTGAAACAG
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAG-TGCAGTGGAACAG
* * * *
41202838 ATTGAAGCTACAACGGCAAATCTTGTTCCCCGACA
65 ATTAAAGCTACAACGGCGAATCTTGTTCCTCGAAA
* * * *
41202873 TTGCAATTTAAAAGATTGAAGCCACAACGGTGAATCTTACTTTCCCTGGCGGTGCAGTGGAGCAA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTAC-TTCCCTGGCAGTGCAGTGGAACAG
* *
41202938 ATTAAAGCTACGACGGTGAATCTTGCTTCCTCGAAA
65 ATTAAAGCTACAACGGCGAATCTTG-TTCCTCGAAA
* * * * * * *
41202974 TTGTAATTTAAAATATTGAAGCCGCAACGGCGAATCTTACTTCTCTGGTAGTACAGTGGAGCAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGA
* * *
41203039 TTAAAGATACGACGGCGAATCTTGCTTCCTCGATA
66 TTAAAGCTACAACGGCGAATCTTG-TTCCTCGAAA
*
41203074 TTGCAATTTAAAAGATTGAAGCCATAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGA
1 TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGA
*
41203139 TTGAAGCTACAACGGCGAATCTTGTTCC
66 TTAAAGCTACAACGGCGAATCTTGTTCC
41203167 CCGATGTAAT
Statistics
Matches: 256, Mismatches: 35, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
99 41 0.16
100 170 0.66
101 45 0.18
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (99 bp):
TTGCAATTTAAAAGATTGAAGCCACAACGGCGAATCTTACTTCCCTGGCAGTGCAGTGGAACAGA
TTAAAGCTACAACGGCGAATCTTGTTCCTCGAAA
Found at i:41203741 original size:26 final size:26
Alignment explanation
Indices: 41203712--41203761 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
41203702 TCTTTTCCTG
41203712 GACAGA-GGAAATACAACAAAAAAAAA
1 GACAGATGGAAATACAA-AAAAAAAAA
*
41203738 GACAGATTGAAATACAAAAAAAAA
1 GACAGATGGAAATACAAAAAAAAA
41203762 TTCAAAAGAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 13 0.59
27 9 0.41
ACGTcount: A:0.68, C:0.10, G:0.14, T:0.08
Consensus pattern (26 bp):
GACAGATGGAAATACAAAAAAAAAAA
Found at i:41204477 original size:3 final size:3
Alignment explanation
Indices: 41204469--41204498 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
41204459 ATTTTTAACT
41204469 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
41204499 AGGTTTGTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:41207029 original size:28 final size:27
Alignment explanation
Indices: 41206996--41207093 Score: 117
Period size: 28 Copynumber: 3.5 Consensus size: 27
41206986 TAATGAGATT
41206996 AGCACTAAGTGTGCGAGTTTAATTGAA
1 AGCACTAAGTGTGCGAGTTTAATTGAA
* **
41207023 ATGCACTAAGTGTGCGAGTATAAGGGTAA
1 A-GCACTAAGTGTGCGAGTTTAATTG-AA
*
41207052 AGCACTAAGTGTGCGAGTTTGATT-ATTA
1 AGCACTAAGTGTGCGAGTTTAATTGA--A
41207080 AGCACTAAGTGTGC
1 AGCACTAAGTGTGC
41207094 ATACTTATTA
Statistics
Matches: 60, Mismatches: 7, Indels: 7
0.81 0.09 0.09
Matches are distributed among these distances:
26 1 0.02
27 1 0.02
28 55 0.92
29 3 0.05
ACGTcount: A:0.32, C:0.12, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTTAATTGAA
Found at i:41208091 original size:22 final size:23
Alignment explanation
Indices: 41208066--41208171 Score: 101
Period size: 22 Copynumber: 4.7 Consensus size: 23
41208056 GCAATTTAAA
*
41208066 GCTG-CCAAATTTGATATATGAT
1 GCTGTCCAATTTTGATATATGAT
* * *
41208088 GCTGTCC-ATTTTAATGTATAAT
1 GCTGTCCAATTTTGATATATGAT
41208110 GCTGTCCAATTTTGAGTATATTGAT
1 GCTGTCCAATTTTGA-TATA-TGAT
* * *
41208135 GCTGTCC-ATTTTAATGTATAAT
1 GCTGTCCAATTTTGATATATGAT
*
41208157 GCTGTCAAATTTTGA
1 GCTGTCCAATTTTGA
41208172 GCATATTATT
Statistics
Matches: 67, Mismatches: 12, Indels: 9
0.76 0.14 0.10
Matches are distributed among these distances:
22 31 0.46
23 17 0.25
24 9 0.13
25 10 0.15
ACGTcount: A:0.27, C:0.13, G:0.17, T:0.42
Consensus pattern (23 bp):
GCTGTCCAATTTTGATATATGAT
Found at i:41208139 original size:25 final size:23
Alignment explanation
Indices: 41208066--41208193 Score: 97
Period size: 22 Copynumber: 5.5 Consensus size: 23
41208056 GCAATTTAAA
*
41208066 GCTG-CCAAATTTGA-TATATGAT
1 GCTGTCCAATTTTGAGTATAT-AT
*
41208088 GCTGTCC-ATTTTAATGTATA-AT
1 GCTGTCCAATTTTGA-GTATATAT
41208110 GCTGTCCAATTTTGAGTATATTGAT
1 GCTGTCCAATTTTGAGTATA-T-AT
*
41208135 GCTGTCC-ATTTTAATGTATA-AT
1 GCTGTCCAATTTTGA-GTATATAT
* *
41208157 GCTGTCAAATTTTGAGCATATTATT
1 GCTGTCCAATTTTGAGTATA-TA-T
*
41208182 ACTGTCCAATTT
1 GCTGTCCAATTT
41208194 GATGAATAAT
Statistics
Matches: 85, Mismatches: 9, Indels: 21
0.74 0.08 0.18
Matches are distributed among these distances:
22 35 0.41
23 14 0.16
24 11 0.13
25 25 0.29
ACGTcount: A:0.27, C:0.14, G:0.16, T:0.43
Consensus pattern (23 bp):
GCTGTCCAATTTTGAGTATATAT
Found at i:41208139 original size:47 final size:47
Alignment explanation
Indices: 41208066--41208213 Score: 187
Period size: 47 Copynumber: 3.2 Consensus size: 47
41208056 GCAATTTAAA
*
41208066 GCTG-CCAAATTTGA-TATA-TGATGCTGTCCATTTTAATGTATAAT
1 GCTGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAAT
41208110 GCTGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAAT
1 GCTGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAAT
* * * * * *
41208157 GCTGTCAAATTTTGAGCATATT-ATTACTGTCCAATTTGATGAATAATT
1 GCTGTCCAATTTTGAGTATATTGA-TGCTGTCCATTTTAATGTATAA-T
41208205 GCTGTCCAA
1 GCTGTCCAA
41208214 AACAGGGTTG
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
44 4 0.04
45 9 0.10
46 5 0.05
47 64 0.70
48 9 0.10
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.41
Consensus pattern (47 bp):
GCTGTCCAATTTTGAGTATATTGATGCTGTCCATTTTAATGTATAAT
Found at i:41209114 original size:128 final size:128
Alignment explanation
Indices: 41208886--41209139 Score: 411
Period size: 128 Copynumber: 2.0 Consensus size: 128
41208876 GCTATACATT
* * * *
41208886 ACAGATCTTATCTCTCTAAAGTTGCTGTAGAGTAGATCACATCCAGTCTTATCTCCCTAAGTAGT
1 ACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGT
41208951 AGTGGAGCAGACAAAAGAAACAAATCCTATCTCCCTAAAGTTGCAGTGAAGCAGATTAAAACC
66 AGTGGAGCAGACAAAAGAAACAAATCCTATCTCCCTAAAGTTGCAGTGAAGCAGATTAAAACC
* *
41209014 ACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATCAAGTCTTATCTCCCTAAGCAGT
1 ACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGT
* * *
41209079 AGTGGAGCAGACAAAAGAAA-AGAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATTAAAA
66 AGTGGAGCAGACAAAAGAAACA-AATCCTATCTCCCTAAAGTTGCAGTGAAGCAGATTAAAA
41209140 TAATGAATCG
Statistics
Matches: 116, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
127 1 0.01
128 115 0.99
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (128 bp):
ACAGATCTTATCTCTCTAAAGTTGCAGTAGAGCAGATCACATCAAGTCTTATCTCCCTAAGCAGT
AGTGGAGCAGACAAAAGAAACAAATCCTATCTCCCTAAAGTTGCAGTGAAGCAGATTAAAACC
Found at i:41209280 original size:44 final size:44
Alignment explanation
Indices: 41209199--41209284 Score: 127
Period size: 44 Copynumber: 2.0 Consensus size: 44
41209189 TATATCAAAC
* * ** *
41209199 CTTATCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACAAGT
1 CTTATCTCCCTGAAGTTACAGTGGAGAAGACTAAAGATACAAGT
41209243 CTTATCTCCCTGAAGTTACAGTGGAGAAGACTAAAGATACAA
1 CTTATCTCCCTGAAGTTACAGTGGAGAAGACTAAAGATACAA
41209285 ATCTCATCCC
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.33, C:0.19, G:0.23, T:0.26
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTACAGTGGAGAAGACTAAAGATACAAGT
Found at i:41212297 original size:20 final size:21
Alignment explanation
Indices: 41212265--41212305 Score: 75
Period size: 20 Copynumber: 2.0 Consensus size: 21
41212255 ATTTACTGTT
41212265 CAACCCTTTTCATGTAAGCAC
1 CAACCCTTTTCATGTAAGCAC
41212286 CAACCC-TTTCATGTAAGCAC
1 CAACCCTTTTCATGTAAGCAC
41212306 TAACTGAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.29, C:0.34, G:0.10, T:0.27
Consensus pattern (21 bp):
CAACCCTTTTCATGTAAGCAC
Found at i:41212746 original size:9 final size:9
Alignment explanation
Indices: 41212732--41212756 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
41212722 GTGCATTGGA
41212732 AAATAAAAG
1 AAATAAAAG
41212741 AAATAAAAG
1 AAATAAAAG
41212750 AAATAAA
1 AAATAAA
41212757 TAATTTAATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.08, T:0.12
Consensus pattern (9 bp):
AAATAAAAG
Found at i:41214091 original size:22 final size:22
Alignment explanation
Indices: 41214061--41214103 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
41214051 ACACCAAAAC
*
41214061 AGGCTTTTAGCGGCGCTTTTTT
1 AGGCCTTTAGCGGCGCTTTTTT
41214083 AGGCCTTTAGCGGCGCTTTTT
1 AGGCCTTTAGCGGCGCTTTTT
41214104 AGCGCCACTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.09, C:0.21, G:0.28, T:0.42
Consensus pattern (22 bp):
AGGCCTTTAGCGGCGCTTTTTT
Found at i:41218800 original size:15 final size:15
Alignment explanation
Indices: 41218768--41218811 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
41218758 CCCTAAATCT
* **
41218768 CTAAACCTTAAATTC
1 CTAACCCTTAAACCC
41218783 CTAACCCTTAAACCC
1 CTAACCCTTAAACCC
*
41218798 CTAACCCCTAAACC
1 CTAACCCTTAAACC
41218812 TTAAATTGGG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.36, C:0.41, G:0.00, T:0.23
Consensus pattern (15 bp):
CTAACCCTTAAACCC
Found at i:41219398 original size:21 final size:21
Alignment explanation
Indices: 41219350--41219399 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 21
41219340 AACTCGACCA
*
41219350 CAAATCTCTAAACCTTAAATCT
1 CAAA-CTCTAAACCTTAAATCC
*
41219372 CTAACTCTAAACCTCT-AATCC
1 CAAACTCTAAACCT-TAAATCC
41219393 CAAACTC
1 CAAACTC
41219400 ATAACCCTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.38, C:0.34, G:0.00, T:0.28
Consensus pattern (21 bp):
CAAACTCTAAACCTTAAATCC
Found at i:41219546 original size:29 final size:30
Alignment explanation
Indices: 41219513--41219575 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 30
41219503 AACCCGACCA
*
41219513 TTAACCCTTAAATCC-T-AAACCCTGAACCC
1 TTAACCCTTAAA-CCTTAAAACCCTAAACCC
41219542 TTAA-CCTTAAACCTTAAAACCCTAAACCC
1 TTAACCCTTAAACCTTAAAACCCTAAACCC
*
41219571 ATAAC
1 TTAAC
41219576 GCATAACCCC
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
27 2 0.07
28 8 0.28
29 19 0.66
ACGTcount: A:0.40, C:0.35, G:0.02, T:0.24
Consensus pattern (30 bp):
TTAACCCTTAAACCTTAAAACCCTAAACCC
Found at i:41219570 original size:7 final size:7
Alignment explanation
Indices: 41219515--41219619 Score: 52
Period size: 7 Copynumber: 14.6 Consensus size: 7
41219505 CCCGACCATT
41219515 AACCCTTA
1 AACCC-TA
*
41219523 AATCCTA
1 AACCCTA
*
41219530 AACCCTG
1 AACCCTA
*
41219537 AACCCTT
1 AACCCTA
*
41219544 AACCTTA
1 AACCCTA
*
41219551 AACCTTAA
1 AACCCT-A
41219559 AACCCTA
1 AACCCTA
41219566 AACCC-A
1 AACCCTA
*
41219572 TAACGCATA
1 -AAC-CCTA
* *
41219581 ACCCCCA
1 AACCCTA
*
41219588 ACCCCT-
1 AACCCTA
41219594 AACCTCTA
1 AACC-CTA
*
41219602 ACCCCTA
1 AACCCTA
*
41219609 ACCCCTA
1 AACCCTA
41219616 AACC
1 AACC
41219620 TTATTTAATA
Statistics
Matches: 76, Mismatches: 15, Indels: 13
0.73 0.14 0.12
Matches are distributed among these distances:
6 4 0.05
7 55 0.72
8 16 0.21
9 1 0.01
ACGTcount: A:0.37, C:0.43, G:0.02, T:0.18
Consensus pattern (7 bp):
AACCCTA
Found at i:41219583 original size:36 final size:35
Alignment explanation
Indices: 41219513--41219583 Score: 81
Period size: 36 Copynumber: 2.0 Consensus size: 35
41219503 AACCCGACCA
* * *
41219513 TTAACCCTTAAATCCTAAACCCTGAACCCTTAACC
1 TTAAACCTTAAACCCTAAACCCTGAACCCATAACC
*
41219548 TTAAACCTTAAAACCCTAAACCCAT-AACGCATAACC
1 TTAAACCTT-AAACCCTAAACCC-TGAACCCATAACC
41219584 CCCAACCCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
35 8 0.27
36 21 0.70
37 1 0.03
ACGTcount: A:0.39, C:0.35, G:0.03, T:0.23
Consensus pattern (35 bp):
TTAAACCTTAAACCCTAAACCCTGAACCCATAACC
Found at i:41219616 original size:14 final size:14
Alignment explanation
Indices: 41219579--41219616 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
41219569 CCATAACGCA
*
41219579 TAACCCCCAACCCC
1 TAACCCCTAACCCC
*
41219593 TAACCTCTAACCCC
1 TAACCCCTAACCCC
41219607 TAACCCCTAA
1 TAACCCCTAA
41219617 ACCTTATTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.32, C:0.53, G:0.00, T:0.16
Consensus pattern (14 bp):
TAACCCCTAACCCC
Found at i:41220547 original size:124 final size:121
Alignment explanation
Indices: 41220256--41220620 Score: 496
Period size: 124 Copynumber: 3.0 Consensus size: 121
41220246 TTTTATTATT
* * *
41220256 ATTAGCGGCGCTTTTCAAAAACGCCGCTAAAGACCGGAGCATTAGCGGCGCTTCTTCAAAAACGC
1 ATTAGCGGCGCTTTTCAAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTCCTCAAAAACGC
* * * * * *
41220321 CACTAAAGACCGGAGCATTAGCGGCGCTTCTTCAAAAACGCCACTAAAGACCGGAGC
66 CGCTAAAGGCCCGAGCATTAGCGGCGCTTCTTC-AAAACGCCGCTAAAGGCCCGAGC
* * * *
41220378 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGGCCAGAGCATTAGCAGTGCTTCGTCAAAAACG
1 ATTAGCGGCGC-TTTTCAAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTCCTCAAAAACG
* *
41220443 CCGCTAAAGGCCCGAGAATTAGCGGCGCTTCTTCAGAAATGCCGCTAAAAGGCCCGAGC
65 CCGCTAAAGGCCCGAGCATTAGCGGCGCTTCTTCA-AAACGCCGCT-AAAGGCCCGAGC
* * *
41220502 ATTAGAGGCGCTTTGTCAAAAACACCGCTAAAGGCCCGAGCATTAGCGGCGCTTCCTCAAAAACG
1 ATTAGCGGCGCTTT-TCAAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTCCTCAAAAACG
* *
41220567 CCGCTAAAGGCCCCAGCATTAGCGGCGCTTTTTCTAAAACGCCGCTAAAGGCCC
65 CCGCTAAAGGCCCGAGCATTAGCGGCGCTTCTTC-AAAACGCCGCTAAAGGCCC
41220621 CAAAAACTTA
Statistics
Matches: 213, Mismatches: 25, Indels: 9
0.86 0.10 0.04
Matches are distributed among these distances:
122 12 0.06
123 96 0.45
124 104 0.49
125 1 0.00
ACGTcount: A:0.29, C:0.29, G:0.24, T:0.18
Consensus pattern (121 bp):
ATTAGCGGCGCTTTTCAAAAACGCCGCTAAAGGCCAGAGCATTAGCGGCGCTTCCTCAAAAACGC
CGCTAAAGGCCCGAGCATTAGCGGCGCTTCTTCAAAACGCCGCTAAAGGCCCGAGC
Found at i:41220622 original size:41 final size:41
Alignment explanation
Indices: 41220256--41220620 Score: 491
Period size: 41 Copynumber: 8.9 Consensus size: 41
41220246 TTTTATTATT
* *
41220256 ATTAGCGGCGCTT-TTCAAAAACGCCGCTAAAGACCGGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
* * *
41220296 ATTAGCGGCGCTTCTTCAAAAACGCCACTAAAGACCGGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
* * *
41220337 ATTAGCGGCGCTTCTTCAAAAACGCCACTAAAGACCGGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
* * *
41220378 ATTAGCGGCGCTTTTTCAAAAATGCCGCTAAAGGCCAGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
* * * *
41220419 ATTAGCAGTGCTTCGTCAAAAACGCCGCTAAAGGCCCGAGA
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
* *
41220460 ATTAGCGGCGCTTCTTCAGAAATGCCGCTAAAAGGCCCGAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCT-AAAGGCCCGAGC
* *
41220502 ATTAGAGGCGCTT-TGTCAAAAACACCGCTAAAGGCCCGAGC
1 ATTAGCGGCGCTTCT-TCAAAAACGCCGCTAAAGGCCCGAGC
* *
41220543 ATTAGCGGCGCTTCCTCAAAAACGCCGCTAAAGGCCCCAGC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
* *
41220584 ATTAGCGGCGCTTTTTCTAAAACGCCGCTAAAGGCCC
1 ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCC
41220621 CAAAAACTTA
Statistics
Matches: 291, Mismatches: 30, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
40 13 0.04
41 244 0.84
42 34 0.12
ACGTcount: A:0.29, C:0.29, G:0.24, T:0.18
Consensus pattern (41 bp):
ATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGGCCCGAGC
Found at i:41227349 original size:16 final size:15
Alignment explanation
Indices: 41227328--41227357 Score: 51
Period size: 15 Copynumber: 1.9 Consensus size: 15
41227318 TAGTTTATCT
41227328 AAACCCTAAAACCCTA
1 AAACCCT-AAACCCTA
41227344 AAACCCTAAACCCT
1 AAACCCTAAACCCT
41227358 TAACACATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.47, C:0.40, G:0.00, T:0.13
Consensus pattern (15 bp):
AAACCCTAAACCCTA
Found at i:41227354 original size:7 final size:8
Alignment explanation
Indices: 41227328--41227357 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
41227318 TAGTTTATCT
41227328 AAACCCTA
1 AAACCCTA
41227336 AAACCCTA
1 AAACCCTA
41227344 AAACCCT-
1 AAACCCTA
41227351 AAACCCT
1 AAACCCT
41227358 TAACACATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 7 0.32
8 15 0.68
ACGTcount: A:0.47, C:0.40, G:0.00, T:0.13
Consensus pattern (8 bp):
AAACCCTA
Found at i:41227403 original size:7 final size:7
Alignment explanation
Indices: 41227393--41227504 Score: 68
Period size: 7 Copynumber: 15.7 Consensus size: 7
41227383 CCCCCGCCTT
41227393 TAAACCA
1 TAAACCA
41227400 TAAACCA
1 TAAACCA
*
41227407 TAAATCA
1 TAAACCA
* *
41227414 TAACCCC
1 TAAACCA
41227421 TAAACCCA
1 TAAA-CCA
*
41227429 TAATCCA
1 TAAACCA
*
41227436 TAAACCT
1 TAAACCA
41227443 TAAA--A
1 TAAACCA
*
41227448 TAGTAACTCT
1 TA--AAC-CA
41227458 TAAACCA
1 TAAACCA
41227465 TAAACTC-
1 TAAAC-CA
41227472 TAAACCA
1 TAAACCA
* *
41227479 TATACCC
1 TAAACCA
41227486 TAAACCA
1 TAAACCA
* *
41227493 AAAACCT
1 TAAACCA
41227500 TAAAC
1 TAAAC
41227505 TATAGTGATA
Statistics
Matches: 78, Mismatches: 19, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
5 2 0.03
6 1 0.01
7 64 0.82
8 9 0.12
10 2 0.03
ACGTcount: A:0.49, C:0.29, G:0.01, T:0.21
Consensus pattern (7 bp):
TAAACCA
Found at i:41227899 original size:41 final size:41
Alignment explanation
Indices: 41227844--41228212 Score: 367
Period size: 41 Copynumber: 9.0 Consensus size: 41
41227834 CGCTAAAATA
41227844 GAGCATTAGCGGCGCTTCCTT-AAAAACGCCGCTAAAGCCCT
1 GAGCATTAGCGGCGCTT-CTTCAAAAACGCCGCTAAAGCCCT
*
41227885 GAGCATTAGCGGCGCTTCTTCAAAAAAGCCGCTAAAGCCCT
1 GAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCT
*
41227926 GAGCATTAGCGGCGCTTCTTTAAAAACGCCGCTAAAGCCCT
1 GAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCT
* * * * *
41227967 GAGCATTAGCGCCACTT-TTCCATAAACGTCGCTAAAGAGCCT
1 GAGCATTAGCGGCGCTTCTT-CAAAAACGCCGCTAAAG-CCCT
*
41228009 -AGCATTAGCGGTGCTT-TTCCAAAAACGCCGCTAAAGACCC-
1 GAGCATTAGCGGCGCTTCTT-CAAAAACGCCGCTAAAG-CCCT
* * * * **
41228049 AAGCATTAACGGCGCTTCCTAAAAAATACCGCTAAAGCCCT
1 GAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCT
* *
41228090 GAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAACCCT
1 GAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCT
* * * * *
41228131 G-GTCATTAGCGGCG-TTTTTGAAAAAATGCAGCAAAAGCCCT
1 GAG-CATTAGCGGCGCTTCTT-CAAAAACGCCGCTAAAGCCCT
* * * * *
41228172 -ATGCATTAGCGACACTTTTTAAAAAAACGCCACTAAAGCCC
1 GA-GCATTAGCGGCGCTTCTT-CAAAAACGCCGCTAAAGCCC
41228213 CAAAAACTCA
Statistics
Matches: 276, Mismatches: 41, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
40 14 0.05
41 236 0.86
42 26 0.09
ACGTcount: A:0.31, C:0.28, G:0.20, T:0.21
Consensus pattern (41 bp):
GAGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCT
Found at i:41228289 original size:39 final size:39
Alignment explanation
Indices: 41228246--41228380 Score: 123
Period size: 39 Copynumber: 3.4 Consensus size: 39
41228236 TAGGCTTAGG
* * *
41228246 TTTTTTGCGGCGCATTTT-GGAAAATGCCGCTAATGCTCA
1 TTTTTAGCGGCG-ATTTTCGGAAAACGCCGCTAATACTCA
*
41228285 TTTTTAGCGGCGTTTTTCGGAAAACGCCGCTAATACTCA
1 TTTTTAGCGGCGATTTTCGGAAAACGCCGCTAATACTCA
* *** * *
41228324 TTCTTTAGTGGC-ATTTTTTTAAAAGCGCCGCTAATGATTGA
1 TT-TTTAGCGGCGATTTTCGGAAAA-CGCCGCTAAT-ACTCA
41228365 TTTTTAGCGGC-ATTTT
1 TTTTTAGCGGCGATTTT
41228381 TTATCCAAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
38 4 0.05
39 40 0.50
40 31 0.39
41 5 0.06
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.39
Consensus pattern (39 bp):
TTTTTAGCGGCGATTTTCGGAAAACGCCGCTAATACTCA
Found at i:41228353 original size:40 final size:38
Alignment explanation
Indices: 41228260--41228382 Score: 129
Period size: 40 Copynumber: 3.1 Consensus size: 38
41228250 TTGCGGCGCA
* * * *
41228260 TTTTGGAAAATGCCGCTAATGCTCATTTTTAGCGGCGT
1 TTTTTGAAAACGCCGCTAATACTCATTTTTAGCGGCAT
* *
41228298 TTTTCGGAAAACGCCGCTAATACTCATTCTTTAGTGGCAT
1 TTTT-TGAAAACGCCGCTAATACTCATT-TTTAGCGGCAT
* * *
41228338 TTTTTTAAAAGCGCCGCTAATGATTGATTTTTAGCGGCAT
1 TTTTTGAAAA-CGCCGCTAAT-ACTCATTTTTAGCGGCAT
41228378 TTTTT
1 TTTTT
41228383 ATCCAAATGC
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
38 4 0.06
39 25 0.35
40 38 0.53
41 5 0.07
ACGTcount: A:0.23, C:0.18, G:0.20, T:0.40
Consensus pattern (38 bp):
TTTTTGAAAACGCCGCTAATACTCATTTTTAGCGGCAT
Found at i:41229731 original size:5 final size:5
Alignment explanation
Indices: 41229715--41229755 Score: 66
Period size: 5 Copynumber: 8.2 Consensus size: 5
41229705 CAACTTTTTT
41229715 GGCCC GGGCCC GGCCC GG-CC GGCCC GGCCC GGCCC GGCCC G
1 GGCCC -GGCCC GGCCC GGCCC GGCCC GGCCC GGCCC GGCCC G
41229756 ATATAATAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.12
5 25 0.74
6 5 0.15
ACGTcount: A:0.00, C:0.56, G:0.44, T:0.00
Consensus pattern (5 bp):
GGCCC
Found at i:41229738 original size:9 final size:9
Alignment explanation
Indices: 41229724--41229753 Score: 51
Period size: 9 Copynumber: 3.2 Consensus size: 9
41229714 TGGCCCGGGC
41229724 CCGGCCCGG
1 CCGGCCCGG
41229733 CCGGCCCGG
1 CCGGCCCGG
41229742 CCCGGCCCGG
1 -CCGGCCCGG
41229752 CC
1 CC
41229754 CGATATAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 11 0.55
10 9 0.45
ACGTcount: A:0.00, C:0.60, G:0.40, T:0.00
Consensus pattern (9 bp):
CCGGCCCGG
Found at i:41229745 original size:19 final size:20
Alignment explanation
Indices: 41229715--41229753 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
41229705 CAACTTTTTT
41229715 GGCCCGGGCCCGGCCCGGCC
1 GGCCCGGGCCCGGCCCGGCC
41229735 GGCCC-GGCCCGGCCCGGCC
1 GGCCCGGGCCCGGCCCGGCC
41229754 CGATATAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.00, C:0.56, G:0.44, T:0.00
Consensus pattern (20 bp):
GGCCCGGGCCCGGCCCGGCC
Found at i:41229799 original size:11 final size:11
Alignment explanation
Indices: 41229783--41229910 Score: 89
Period size: 11 Copynumber: 12.4 Consensus size: 11
41229773 ATTTTTTTAA
41229783 TTTTAAAATAT
1 TTTTAAAATAT
41229794 TTTTAAAATAT
1 TTTTAAAATAT
* *
41229805 TTTT---TTAA
1 TTTTAAAATAT
41229813 TTTTAAAATAT
1 TTTTAAAATAT
41229824 TTTTAAAATAT
1 TTTTAAAATAT
41229835 TTTTAAAATACT
1 TTTTAAAATA-T
**
41229847 TTTT--TTTAT
1 TTTTAAAATAT
*
41229856 TTTT----TAA
1 TTTTAAAATAT
41229863 TTTTAAAATAT
1 TTTTAAAATAT
41229874 TTTTAAAATACT
1 TTTTAAAATA-T
**
41229886 TTTT-TTA-AT
1 TTTTAAAATAT
41229895 TTTTAAAATAAT
1 TTTTAAAAT-AT
41229907 TTTT
1 TTTT
41229911 TGGTATTTAT
Statistics
Matches: 93, Mismatches: 12, Indels: 23
0.73 0.09 0.18
Matches are distributed among these distances:
7 6 0.06
8 6 0.06
9 10 0.11
10 4 0.04
11 51 0.55
12 16 0.17
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:41229806 original size:30 final size:30
Alignment explanation
Indices: 41229772--41229838 Score: 134
Period size: 30 Copynumber: 2.2 Consensus size: 30
41229762 TAAACATATT
41229772 TATTTTTTTAATTTTAAAATATTTTTAAAA
1 TATTTTTTTAATTTTAAAATATTTTTAAAA
41229802 TATTTTTTTAATTTTAAAATATTTTTAAAA
1 TATTTTTTTAATTTTAAAATATTTTTAAAA
41229832 TATTTTT
1 TATTTTT
41229839 AAAATACTTT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (30 bp):
TATTTTTTTAATTTTAAAATATTTTTAAAA
Found at i:41229878 original size:39 final size:39
Alignment explanation
Indices: 41229770--41229898 Score: 188
Period size: 39 Copynumber: 3.3 Consensus size: 39
41229760 AATAAACATA
*
41229770 TTTATTTTTTTAATTTTAAAATATTTTTAAAATA-TTTT
1 TTTAATTTTTTAATTTTAAAATATTTTTAAAATACTTTT
* *
41229808 TTTAATTTTAAAATATTTTTAAAATATTTTTAAAATACTTTT
1 TTTAATTTT---TTAATTTTAAAATATTTTTAAAATACTTTT
*
41229850 TTTTATTTTTTAATTTTAAAATATTTTTAAAATACTTTT
1 TTTAATTTTTTAATTTTAAAATATTTTTAAAATACTTTT
41229889 TTTAATTTTT
1 TTTAATTTTT
41229899 AAAATAATTT
Statistics
Matches: 80, Mismatches: 7, Indels: 7
0.85 0.07 0.07
Matches are distributed among these distances:
38 8 0.10
39 37 0.46
41 23 0.29
42 12 0.15
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (39 bp):
TTTAATTTTTTAATTTTAAAATATTTTTAAAATACTTTT
Found at i:41229906 original size:12 final size:12
Alignment explanation
Indices: 41229863--41229910 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
41229853 TATTTTTTAA
41229863 TTTTAAAAT-AT
1 TTTTAAAATAAT
*
41229874 TTTTAAAATACT
1 TTTTAAAATAAT
*
41229886 TTTT---TTAAT
1 TTTTAAAATAAT
41229895 TTTTAAAATAAT
1 TTTTAAAATAAT
41229907 TTTT
1 TTTT
41229911 TGGTATTTAT
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
9 7 0.24
11 9 0.31
12 13 0.45
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (12 bp):
TTTTAAAATAAT
Found at i:41231830 original size:81 final size:81
Alignment explanation
Indices: 41231695--41231889 Score: 313
Period size: 81 Copynumber: 2.4 Consensus size: 81
41231685 TTTATCGTTA
* * * *
41231695 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCGGTGAAATTATCAGACTATAAGTCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGAAATTATCAGACTATAAGTCT
41231760 AGCAGGCTTAATGCCG
66 AGCAGGCTTAATGCCG
41231776 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATG-CGGTGACACATT-TCAGACTATAAGT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGA-A-ATTATCAGACTATAAGT
41231839 CTAGCAGGCTTAATGCCG
64 CTAGCAGGCTTAATGCCG
*
41231857 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
41231890 AAGAGCCGGT
Statistics
Matches: 107, Mismatches: 5, Indels: 4
0.92 0.04 0.03
Matches are distributed among these distances:
80 6 0.06
81 98 0.92
82 3 0.03
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (81 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCGGTGAAATTATCAGACTATAAGTCT
AGCAGGCTTAATGCCG
Found at i:41231900 original size:41 final size:41
Alignment explanation
Indices: 41231695--41231889 Score: 315
Period size: 40 Copynumber: 4.8 Consensus size: 41
41231685 TTTATCGTTA
* * * *
41231695 GTGACATAATTCAGACTTTACGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
41231736 GTGA-A-ATTATCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATT-TCAGACTATAAGTCTAGCAGGCTTAATGCCG
41231776 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATG-CG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
41231816 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
*
41231857 GTGACACATTTCGGACTATAAGTCTAGCAGGCT
1 GTGACACATTTCAGACTATAAGTCTAGCAGGCT
41231890 AAGAGCCGGT
Statistics
Matches: 146, Mismatches: 4, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
39 2 0.01
40 74 0.51
41 67 0.46
42 3 0.02
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (41 bp):
GTGACACATTTCAGACTATAAGTCTAGCAGGCTTAATGCCG
Done.