Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 149 of 173
Found at i:45136778 original size:23 final size:21
Alignment explanation
Indices: 45136740--45136786 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 21
45136730 ATATTAAGAA
* *
45136740 ATTGTTAAAAATTATATTTAT
1 ATTGTTAAAAAATATATTAAT
45136761 ATTGATTAATAAAATATATTAAT
1 ATTG-TTAA-AAAATATATTAAT
45136784 ATT
1 ATT
45136787 AAACTATGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 4 0.18
22 4 0.18
23 14 0.64
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (21 bp):
ATTGTTAAAAAATATATTAAT
Found at i:45136829 original size:29 final size:26
Alignment explanation
Indices: 45136767--45136829 Score: 63
Period size: 29 Copynumber: 2.3 Consensus size: 26
45136757 TTATATTGAT
*
45136767 TAATAAAATATATTAATATTAAACTA
1 TAATAAAATATATTAATATTAAAATA
* *
45136793 TGATTAAAATAATATTTAATTTTAAAATAA
1 T-AATAAAAT-ATA-TTAATATTAAAAT-A
45136823 TAATAAA
1 TAATAAA
45136830 TTAAAATTAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
26 1 0.03
27 7 0.24
28 3 0.10
29 16 0.55
30 2 0.07
ACGTcount: A:0.57, C:0.02, G:0.02, T:0.40
Consensus pattern (26 bp):
TAATAAAATATATTAATATTAAAATA
Found at i:45136831 original size:18 final size:18
Alignment explanation
Indices: 45136796--45136831 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
45136786 TAAACTATGA
* *
45136796 TTAAAATAATATTTAATT
1 TTAAAATAATAATAAATT
45136814 TTAAAATAATAATAAATT
1 TTAAAATAATAATAAATT
45136832 AAAATTAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (18 bp):
TTAAAATAATAATAAATT
Found at i:45136835 original size:16 final size:18
Alignment explanation
Indices: 45136795--45136836 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
45136785 TTAAACTATG
*
45136795 ATTAAAATAATATTTAAT
1 ATTAAAATAATATATAAT
*
45136813 TTTAAAATAATA-ATAA-
1 ATTAAAATAATATATAAT
45136829 ATTAAAAT
1 ATTAAAAT
45136837 TAACAAATAT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 7 0.33
17 3 0.14
18 11 0.52
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
ATTAAAATAATATATAAT
Found at i:45139011 original size:17 final size:17
Alignment explanation
Indices: 45138972--45139007 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
45138962 CAAAAATTTG
45138972 AAAGA-AAAAGAAAGAA
1 AAAGAGAAAAGAAAGAA
45138988 AAAGAGAAAAG-AAGAA
1 AAAGAGAAAAGAAAGAA
45139004 AAAG
1 AAAG
45139008 GAGATGTACG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (17 bp):
AAAGAGAAAAGAAAGAA
Found at i:45139381 original size:20 final size:20
Alignment explanation
Indices: 45139345--45139382 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
45139335 GTGGAATTTG
*
45139345 TATGAAAATATAGAATTAAA
1 TATGAAAATATAAAATTAAA
45139365 TATGAAGAATA-AAAATTA
1 TATGAA-AATATAAAATTA
45139383 GTCTCGATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.61, C:0.00, G:0.11, T:0.29
Consensus pattern (20 bp):
TATGAAAATATAAAATTAAA
Found at i:45142039 original size:23 final size:22
Alignment explanation
Indices: 45142013--45142055 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
45142003 GTCTTCAATA
*
45142013 ATAAGCAACTAAAAGTCTCAAAG
1 ATAAACAACTAAAAG-CTCAAAG
*
45142036 ATAAACAATTAAAAGCTCAA
1 ATAAACAACTAAAAGCTCAA
45142056 GTTGTTTTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 5 0.28
23 13 0.72
ACGTcount: A:0.56, C:0.16, G:0.09, T:0.19
Consensus pattern (22 bp):
ATAAACAACTAAAAGCTCAAAG
Found at i:45143384 original size:9 final size:9
Alignment explanation
Indices: 45143364--45143439 Score: 84
Period size: 9 Copynumber: 8.4 Consensus size: 9
45143354 TTTGGTTAAA
*
45143364 AATTCACCG
1 AATTAACCG
*
45143373 AATTAACTG
1 AATTAACCG
45143382 AATT-ACCTG
1 AATTAACC-G
45143391 AATTAACCG
1 AATTAACCG
*
45143400 GATT-ACTCG
1 AATTAAC-CG
*
45143409 AATTACCCG
1 AATTAACCG
45143418 AATTAACCG
1 AATTAACCG
45143427 AATTAACCG
1 AATTAACCG
45143436 AATT
1 AATT
45143440 GAATAACTAC
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
8 4 0.07
9 48 0.86
10 4 0.07
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (9 bp):
AATTAACCG
Found at i:45143404 original size:27 final size:27
Alignment explanation
Indices: 45143364--45143439 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 27
45143354 TTTGGTTAAA
* *
45143364 AATTCACCGAATTAACTGAATTACCTG
1 AATTAACCGAATTAACTGAATTACCCG
*
45143391 AATTAACCGGATT-ACTCGAATTACCCG
1 AATTAACCGAATTAACT-GAATTACCCG
*
45143418 AATTAACCGAATTAACCGAATT
1 AATTAACCGAATTAACTGAATT
45143440 GAATAACTAC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
26 3 0.07
27 37 0.88
28 2 0.05
ACGTcount: A:0.38, C:0.22, G:0.12, T:0.28
Consensus pattern (27 bp):
AATTAACCGAATTAACTGAATTACCCG
Found at i:45143490 original size:6 final size:6
Alignment explanation
Indices: 45143479--45143507 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
45143469 ACTTTTAGAC
45143479 TTTAGT TTTAGT TTTAGT TTTAGT TTTAG
1 TTTAGT TTTAGT TTTAGT TTTAGT TTTAG
45143508 AATTTTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.17, C:0.00, G:0.17, T:0.66
Consensus pattern (6 bp):
TTTAGT
Found at i:45143531 original size:20 final size:20
Alignment explanation
Indices: 45143463--45143520 Score: 66
Period size: 18 Copynumber: 3.0 Consensus size: 20
45143453 ATCAAATTAT
* *
45143463 TTTTAGACTTTTAGACTTTAG
1 TTTTAGAATTTTAG-TTTTAG
45143484 TTTTAG--TTTTAGTTTTAG
1 TTTTAGAATTTTAGTTTTAG
*
45143502 TTTTAGAATTTTATTTTTA
1 TTTTAGAATTTTAGTTTTA
45143521 TTTATTAAAT
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
18 11 0.33
19 6 0.18
20 10 0.30
21 6 0.18
ACGTcount: A:0.22, C:0.03, G:0.12, T:0.62
Consensus pattern (20 bp):
TTTTAGAATTTTAGTTTTAG
Found at i:45143593 original size:18 final size:18
Alignment explanation
Indices: 45143554--45143596 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
45143544 TATGATTGGG
**
45143554 TTGGGTTGGGTTGGGTAA
1 TTGGGTTGGGTTGAATAA
*
45143572 TTGGGTTGGGTTGAATAC
1 TTGGGTTGGGTTGAATAA
45143590 TTGGGTT
1 TTGGGTT
45143597 TGGATTGGGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.12, C:0.02, G:0.44, T:0.42
Consensus pattern (18 bp):
TTGGGTTGGGTTGAATAA
Found at i:45144310 original size:12 final size:12
Alignment explanation
Indices: 45144293--45144318 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
45144283 TATTATTTAT
45144293 TTAAATAATTAA
1 TTAAATAATTAA
45144305 TTAAATAATTAA
1 TTAAATAATTAA
45144317 TT
1 TT
45144319 TTCCTAATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (12 bp):
TTAAATAATTAA
Found at i:45148204 original size:25 final size:25
Alignment explanation
Indices: 45148147--45148204 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 25
45148137 TAGCTATTAT
* * *
45148147 GAGCATCCCGTTATATGGCTCTCAC
1 GAGCTTCCCGATATATGACTCTCAC
*
45148172 GAGCTTCCCGATATATGACTCTCAT
1 GAGCTTCCCGATATATGACTCTCAC
*
45148197 GAGTTTCC
1 GAGCTTCC
45148205 TAATTAATGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.31
Consensus pattern (25 bp):
GAGCTTCCCGATATATGACTCTCAC
Found at i:45148290 original size:25 final size:25
Alignment explanation
Indices: 45148222--45148276 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
45148212 TGGCTCTCTT
* * * *
45148222 GAGCTTCCCGTTTATGA-CTTGTAT
1 GAGCTTCCCGATAATCAGCTTGTAA
45148246 GAGCTTCCCGATAATCAGCTTGTAA
1 GAGCTTCCCGATAATCAGCTTGTAA
45148271 GAGCTT
1 GAGCTT
45148277 TCCATTATAC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
24 14 0.54
25 12 0.46
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (25 bp):
GAGCTTCCCGATAATCAGCTTGTAA
Found at i:45151520 original size:19 final size:20
Alignment explanation
Indices: 45151484--45151526 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
45151474 TTTCTTTGTA
*
45151484 ATAATTTCTTTTAGATA-TT
1 ATAACTTCTTTTAGATATTT
45151503 ATAACTTCTTTTCA-ATATTT
1 ATAACTTCTTTT-AGATATTT
45151523 ATAA
1 ATAA
45151527 ATAAATTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
19 14 0.67
20 7 0.33
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.53
Consensus pattern (20 bp):
ATAACTTCTTTTAGATATTT
Found at i:45154144 original size:12 final size:12
Alignment explanation
Indices: 45154127--45154156 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
45154117 CGTCCACTTT
45154127 ATCATCATCAAC
1 ATCATCATCAAC
*
45154139 ATCATCATCACC
1 ATCATCATCAAC
45154151 ATCATC
1 ATCATC
45154157 CTCGATTCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.37, C:0.37, G:0.00, T:0.27
Consensus pattern (12 bp):
ATCATCATCAAC
Found at i:45155452 original size:3 final size:3
Alignment explanation
Indices: 45155444--45155489 Score: 92
Period size: 3 Copynumber: 15.3 Consensus size: 3
45155434 TCTCTCCAGT
45155444 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
45155490 CTTTTAATAC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:45166528 original size:17 final size:18
Alignment explanation
Indices: 45166489--45166539 Score: 59
Period size: 17 Copynumber: 2.9 Consensus size: 18
45166479 CATTATTGAA
45166489 ATTGAAATGGCAAATGAT
1 ATTGAAATGGCAAATGAT
* * *
45166507 GTTGAAGTGG-AAATGCT
1 ATTGAAATGGCAAATGAT
*
45166524 ATTGAAATAGCAAATG
1 ATTGAAATGGCAAATG
45166540 GCATGAAATG
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
17 13 0.50
18 13 0.50
ACGTcount: A:0.41, C:0.06, G:0.25, T:0.27
Consensus pattern (18 bp):
ATTGAAATGGCAAATGAT
Found at i:45168125 original size:20 final size:20
Alignment explanation
Indices: 45168100--45168142 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
45168090 AAAACTTACA
45168100 CTTGTTGATAAAACTCGTTT
1 CTTGTTGATAAAACTCGTTT
45168120 CTTGTTGATAAAACTCGTTT
1 CTTGTTGATAAAACTCGTTT
45168140 CTT
1 CTT
45168143 AATTTTGGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.23, C:0.16, G:0.14, T:0.47
Consensus pattern (20 bp):
CTTGTTGATAAAACTCGTTT
Found at i:45169115 original size:54 final size:53
Alignment explanation
Indices: 45169042--45169480 Score: 339
Period size: 54 Copynumber: 8.1 Consensus size: 53
45169032 TATAACAGTT
* * *
45169042 ATTTTACCATTCGGGGGTATTTCGGTAATTTTATCCTTCGGGGGTATTTC-AGTA
1 ATTTTATC-TTCGAGGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCGA-TA
* * *
45169096 ATTTTATCATTCGAAGGTATTTCAGTAATTTTACCCTTTGGGGGTATTTCGATA
1 ATTTTATC-TTCGAGGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCGATA
* * ** * *
45169150 ATTTTACCTTTC-AGGGGTATTTCGATAATTTTACCCTTCGAAGGTATTTTGGTA
1 ATTTTATC-TTCGA-GGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCGATA
* * * *
45169204 AATTTA-C-CCGAGAGTATTTCGGTAATTTTACCCTTCGAGGGTATTGGTATTTCGATT
1 ATTTTATCTTCGAGGGTATTTCGGTAATTTTACCCTTC--GGG----GGTATTTCGATA
* * * * *
45169261 ATTTTACTCTTCGAGGGTATTTCGATCATTTTACCCTTCGAGTGTATTTCGATC
1 ATTTTA-TCTTCGAGGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCGATA
* * * * *
45169315 ATTTTATCCTTCGAGGGTATTTTGGTCATTTTACCCTTTGAGGGTATTTCGATC
1 ATTTTAT-CTTCGAGGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCGATA
* * * * * * * *
45169369 ATTTTACCTTTCGGGGGTATTTCAGTTATTTTACCTTTTGAGGGTATTTCGATC
1 ATTTTATC-TTCGAGGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCGATA
* * * * * *
45169423 ATTTTACCCTATCGGGGGTATTTCAGTTATTTTACCCTAC-GGGGTATTTCGATC
1 ATTTTA-TCT-TCGAGGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCGATA
45169477 ATTT
1 ATTT
45169481 GCCCATAACT
Statistics
Matches: 322, Mismatches: 47, Indels: 32
0.80 0.12 0.08
Matches are distributed among these distances:
51 24 0.07
52 1 0.00
53 5 0.02
54 221 0.69
55 29 0.09
57 14 0.04
58 2 0.01
59 1 0.00
60 25 0.08
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44
Consensus pattern (53 bp):
ATTTTATCTTCGAGGGTATTTCGGTAATTTTACCCTTCGGGGGTATTTCGATA
Found at i:45169167 original size:81 final size:80
Alignment explanation
Indices: 45169037--45169480 Score: 357
Period size: 81 Copynumber: 5.5 Consensus size: 80
45169027 AGGGGTATAA
* * * *
45169037 CAGTTATTTTACCATTCGGGGGTATTTCGGTAATTTTATCCTTCGGGGGTATTTC-AGTAATTTT
1 CAGTAATTTTACCCTTCGGGGGTATTTCGATAATTTTA-CCTTCAGGGGTATTTCGA-TAATTTT
* * *
45169101 ATCATTCGAAGGTATTT
64 ACCCTTCGAGGGTATTT
*
45169118 CAGTAATTTTACCCTTTGGGGGTATTTCGATAATTTTACCTTTCAGGGGTATTTCGATAATTTTA
1 CAGTAATTTTACCCTTCGGGGGTATTTCGATAATTTTACC-TTCAGGGGTATTTCGATAATTTTA
*
45169183 CCCTTCGAAGGTATTT
65 CCCTTCGAGGGTATTT
** * * * * *
45169199 TGGTAAATTTA-CC--CGAGAGTATTTCGGTAATTTTACCCTTCGAGGGTATTGGTATTTCGATT
1 CAGTAATTTTACCCTTCGGGGGTATTTCGATAATTTTA-CCTTC-A-GG----GGTATTTCGATA
*
45169261 ATTTTACTCTTCGAGGGTATTT
59 ATTTTACCCTTCGAGGGTATTT
* * * * * * *
45169283 C-GATCATTTTACCCTTCGAGTGTATTTCGATCATTTTATCCTTC-GAGGGTATTTTGGTCATTT
1 CAG-TAATTTTACCCTTCGGGGGTATTTCGATAATTTTA-CCTTCAG-GGGTATTTCGATAATTT
*
45169346 TACCCTTTGAGGGTATTT
63 TACCCTTCGAGGGTATTT
* * * ** *
45169364 C-GATCATTTTACCTTTCGGGGGTATTTC-AGTTATTTTACCTTTTGAGGGTATTTCGATCATTT
1 CAG-TAATTTTACCCTTCGGGGGTATTTCGA-TAATTTTACCTTCAG-GGGTATTTCGATAATTT
*
45169427 TACCCTATCGGGGGTATTT
63 TACCCT-TCGAGGGTATTT
* * *
45169446 CAGTTATTTTACCCTAC-GGGGTATTTCGATCATTT
1 CAGTAATTTTACCCTTCGGGGGTATTTCGATAATTT
45169481 GCCCATAACT
Statistics
Matches: 302, Mismatches: 42, Indels: 38
0.79 0.11 0.10
Matches are distributed among these distances:
78 21 0.07
79 3 0.01
80 11 0.04
81 176 0.58
82 24 0.08
83 2 0.01
84 38 0.13
85 3 0.01
87 24 0.08
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44
Consensus pattern (80 bp):
CAGTAATTTTACCCTTCGGGGGTATTTCGATAATTTTACCTTCAGGGGTATTTCGATAATTTTAC
CCTTCGAGGGTATTT
Found at i:45169254 original size:33 final size:33
Alignment explanation
Indices: 45169217--45169281 Score: 103
Period size: 33 Copynumber: 2.0 Consensus size: 33
45169207 TTACCCGAGA
*
45169217 GTATTTCGGTAATTTTACCCTTCGAGGGTATTG
1 GTATTTCGATAATTTTACCCTTCGAGGGTATTG
* *
45169250 GTATTTCGATTATTTTACTCTTCGAGGGTATT
1 GTATTTCGATAATTTTACCCTTCGAGGGTATT
45169282 TCGATCATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.18, C:0.14, G:0.22, T:0.46
Consensus pattern (33 bp):
GTATTTCGATAATTTTACCCTTCGAGGGTATTG
Found at i:45169255 original size:24 final size:26
Alignment explanation
Indices: 45169042--45169471 Score: 242
Period size: 27 Copynumber: 15.8 Consensus size: 26
45169032 TATAACAGTT
* *
45169042 ATTTTACCATTCGGGGGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTT-GGTA
* * *
45169069 ATTTTATCCTTCGGGGGTATTTCAGTA
1 ATTTTACCCTTCGAGGGTATTT-GGTA
* * * *
45169096 ATTTTATCATTCGAAGGTATTTCAGTA
1 ATTTTACCCTTCGAGGGTATTT-GGTA
* * *
45169123 ATTTTACCCTTTGGGGGTATTTCGATA
1 ATTTTACCCTTCGAGGGTATTT-GGTA
* *
45169150 ATTTTACCTTTC-AGGGGTATTTCGATA
1 ATTTTACCCTTCGA-GGGTATTT-GGTA
*
45169177 ATTTTACCCTTCGAAGGTATTTTGGTA
1 ATTTTACCCTTCGAGGGTA-TTTGGTA
* *
45169204 AATTTA-CC--CGAGAGTATTTCGGTA
1 ATTTTACCCTTCGAGGGTATTT-GGTA
45169228 ATTTTACCCTTCGAGGGTA-TTGGTATTTCGA
1 ATTTTACCCTTCGAGGGTATTTGG----T--A
* * *
45169259 TTATTTTACTCTTCGAGGGTATTTCGATC
1 --ATTTTACCCTTCGAGGGTATTT-GGTA
* * *
45169288 ATTTTACCCTTCGAGTGTATTTCGATC
1 ATTTTACCCTTCGAGGGTATTT-GGTA
* *
45169315 ATTTTATCCTTCGAGGGTATTTTGGTC
1 ATTTTACCCTTCGAGGGTA-TTTGGTA
* * *
45169342 ATTTTACCCTTTGAGGGTATTTCGATC
1 ATTTTACCCTTCGAGGGTATTT-GGTA
* * * *
45169369 ATTTTACCTTTCGGGGGTATTTCAGTT
1 ATTTTACCCTTCGAGGGTATTT-GGTA
* * * *
45169396 ATTTTACCTTTTGAGGGTATTTCGATC
1 ATTTTACCCTTCGAGGGTATTT-GGTA
* * *
45169423 ATTTTACCCTATCGGGGGTATTTCAGTT
1 ATTTTACCCT-TCGAGGGTATTT-GGTA
*
45169451 ATTTTACCCTACG-GGGTATTT
1 ATTTTACCCTTCGAGGGTATTT
45169472 CGATCATTTG
Statistics
Matches: 330, Mismatches: 53, Indels: 41
0.78 0.12 0.10
Matches are distributed among these distances:
23 3 0.01
24 15 0.05
25 4 0.01
26 15 0.05
27 240 0.73
28 29 0.09
29 1 0.00
31 2 0.01
33 18 0.05
34 2 0.01
35 1 0.00
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44
Consensus pattern (26 bp):
ATTTTACCCTTCGAGGGTATTTGGTA
Found at i:45169280 original size:84 final size:86
Alignment explanation
Indices: 45169084--45169335 Score: 236
Period size: 84 Copynumber: 3.0 Consensus size: 86
45169074 ATCCTTCGGG
* * * * * *
45169084 GGTATTTC-AGTAATTTTATCATTCGAAGGTATTTC-AGTAATTTTACCCTTTGGGGGTATTTCG
1 GGTATTTCGA-TAATTTTACCCTTCGAAGGTATTTCGA-TAAATTTACCC-TCGAGAGTATTTCG
*
45169147 ATAATTTTACCTTTC-A-GG----
63 ATAATTTTACCCTTCGAGGGTATT
* * *
45169165 GGTATTTCGATAATTTTACCCTTCGAAGGTATTTTGGTAAATTTA-CC-CGAGAGTATTTCGGTA
1 GGTATTTCGATAATTTTACCCTTCGAAGGTATTTCGATAAATTTACCCTCGAGAGTATTTCGATA
45169228 ATTTTACCCTTCGAGGGTATT
66 ATTTTACCCTTCGAGGGTATT
* * * * * *
45169249 GGTATTTCGATTATTTTACTCTTCGAGGGTATTTCGATCATTTTACCCTTCGAGTGTATTTCGAT
1 GGTATTTCGATAATTTTACCCTTCGAAGGTATTTCGATAAATTTACCC-TCGAGAGTATTTCGAT
* *
45169314 CATTTTATCCTTCGAGGGTATT
65 AATTTTACCCTTCGAGGGTATT
45169336 TTGGTCATTT
Statistics
Matches: 139, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
78 23 0.17
79 1 0.01
80 4 0.03
81 37 0.27
82 1 0.01
84 38 0.27
85 2 0.01
87 33 0.24
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.44
Consensus pattern (86 bp):
GGTATTTCGATAATTTTACCCTTCGAAGGTATTTCGATAAATTTACCCTCGAGAGTATTTCGATA
ATTTTACCCTTCGAGGGTATT
Found at i:45169335 original size:165 final size:159
Alignment explanation
Indices: 45169058--45169480 Score: 365
Period size: 165 Copynumber: 2.6 Consensus size: 159
45169048 CCATTCGGGG
*
45169058 GTATTTCGGTAATTTTATCCTTCGGGGGTATTTCAGTAATTTTATCATTCGAAGGTATTTCAGTA
1 GTATTTCGGTAATTTTACCCTTCGGGGGTATTTCAGTAATTTTATCATTCGAAGGTATTTCAGTA
* *
45169123 ATTTTACCCTTTGGGGGTATTTCGATAATTTTACCTTTCAGGGGTATTTCGATAATTTTACCCTT
66 ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCTTTCAGGGGTATTTCGATAATTTTACCCTT
45169188 CGAAGGTATTTTGGTAAATTTACCCGAGA
131 CGAAGGTATTTTGGTAAATTTACCCGAGA
* *
45169217 GTATTTCGGTAATTTTACCCTTCGAGGGTATTGGTATTTC-GATTATTTTACTC-TTCGAGGGTA
1 GTATTTCGGTAATTTTACCCTTC--GGG----GGTATTTCAG-TAATTTTA-TCATTCGAAGGTA
* * * * * *
45169280 TTTC-GATCATTTTACCCTTCGAGTGTATTTCGATCATTTTATCC-TTC-GAGGGTATTTTGGTC
58 TTTCAG-TAATTTTACCCTTCGAGGGTATTTCGATAATTTTA-CCTTTCAG-GGGTATTTCGATA
* * * * * * * *
45169342 ATTTTACCCTTTGAGGGTATTTCGATCATTTTACCTTTCGGGG
120 ATTTTACCCTTCGAAGGTATTTTGGTAAATTTACC---CGAGA
* * * * * * * * **
45169385 GTATTTCAGTTATTTTACCTTTTGAGGGTATTTC-GATCATTTTACCCTATCGGGGGTATTTCAG
1 GTATTTCGGTAATTTTACCCTTCGGGGGTATTTCAG-TAATTTTATCAT-TCGAAGGTATTTCAG
* * *
45169449 TTATTTTACCCTACG-GGGTATTTCGATCATTT
64 TAATTTTACCCTTCGAGGGTATTTCGATAATTT
45169481 GCCCATAACT
Statistics
Matches: 217, Mismatches: 30, Indels: 31
0.78 0.11 0.11
Matches are distributed among these distances:
159 22 0.10
161 4 0.02
162 34 0.16
163 25 0.12
164 4 0.02
165 100 0.46
166 6 0.03
168 22 0.10
ACGTcount: A:0.20, C:0.16, G:0.20, T:0.44
Consensus pattern (159 bp):
GTATTTCGGTAATTTTACCCTTCGGGGGTATTTCAGTAATTTTATCATTCGAAGGTATTTCAGTA
ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCTTTCAGGGGTATTTCGATAATTTTACCCTT
CGAAGGTATTTTGGTAAATTTACCCGAGA
Found at i:45172195 original size:19 final size:19
Alignment explanation
Indices: 45172171--45172209 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
45172161 TCTACACTAT
* *
45172171 AGAAAATATTAAAAAGAAA
1 AGAAAAAATAAAAAAGAAA
*
45172190 AGAAAAAATAAAAAATAAA
1 AGAAAAAATAAAAAAGAAA
45172209 A
1 A
45172210 TATCTATTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.79, C:0.00, G:0.08, T:0.13
Consensus pattern (19 bp):
AGAAAAAATAAAAAAGAAA
Found at i:45173869 original size:15 final size:15
Alignment explanation
Indices: 45173839--45173868 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
45173829 AGAAAATAAC
45173839 AGAAAAGTAATAAAA
1 AGAAAAGTAATAAAA
45173854 AGAAAA-TAATAAAA
1 AGAAAAGTAATAAAA
45173868 A
1 A
45173869 ACTTGATATT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (15 bp):
AGAAAAGTAATAAAA
Found at i:45178230 original size:16 final size:16
Alignment explanation
Indices: 45178209--45178239 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
45178199 ATCGAGTTAA
45178209 GAAAATTAATTAATTG
1 GAAAATTAATTAATTG
45178225 GAAAATTAATTAATT
1 GAAAATTAATTAATT
45178240 AATTAAAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.10, T:0.39
Consensus pattern (16 bp):
GAAAATTAATTAATTG
Found at i:45178237 original size:20 final size:18
Alignment explanation
Indices: 45178212--45178253 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 18
45178202 GAGTTAAGAA
45178212 AATTAATTAATTGGAAAATT
1 AATTAATTAATT--AAAATT
45178232 AATTAATTAATTAAAATT
1 AATTAATTAATTAAAATT
45178250 AATT
1 AATT
45178254 TATAATGTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 10 0.45
20 12 0.55
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (18 bp):
AATTAATTAATTAAAATT
Found at i:45180733 original size:37 final size:37
Alignment explanation
Indices: 45180665--45180740 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
45180655 GCTAACAAAT
*
45180665 AATTTAAAAATTATAAAAAATATTCAAAAAAATTAAA
1 AATTTAAAAATTATAAAAAATATTCAAAAAAATAAAA
* *
45180702 AATTTAAAAAATGTAT-AAAAA-GTTCATAAAAATAAAA
1 AATTT-AAAAAT-TATAAAAAATATTCAAAAAAATAAAA
45180739 AA
1 AA
45180741 ATAGCCTGAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
37 20 0.59
38 11 0.32
39 3 0.09
ACGTcount: A:0.67, C:0.03, G:0.03, T:0.28
Consensus pattern (37 bp):
AATTTAAAAATTATAAAAAATATTCAAAAAAATAAAA
Found at i:45191074 original size:11 final size:11
Alignment explanation
Indices: 45191057--45191133 Score: 77
Period size: 11 Copynumber: 7.0 Consensus size: 11
45191047 AGATTGAACT
45191057 GAGAGAATTGA
1 GAGAGAATTGA
*
45191068 GTA-AGAATTAA
1 G-AGAGAATTGA
45191079 GAGAGAATTGA
1 GAGAGAATTGA
*
45191090 GAGAGGATTGA
1 GAGAGAATTGA
45191101 GA-ATGAATTGA
1 GAGA-GAATTGA
* *
45191112 GAGAGAGTTGT
1 GAGAGAATTGA
*
45191123 GAGTGAATTGA
1 GAGAGAATTGA
45191134 AAAAGTGGGA
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
10 2 0.04
11 49 0.92
12 2 0.04
ACGTcount: A:0.42, C:0.00, G:0.35, T:0.23
Consensus pattern (11 bp):
GAGAGAATTGA
Found at i:45191133 original size:33 final size:33
Alignment explanation
Indices: 45191056--45191133 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
45191046 GAGATTGAAC
45191056 TGAGAGAATTGAGTAAGAATTAAGAGAGAATTG
1 TGAGAGAATTGAGTAAGAATTAAGAGAGAATTG
* * * *
45191089 AGAGAGGATTGAG-AATGAATTGAGAGAGAGTTG
1 TGAGAGAATTGAGTAA-GAATTAAGAGAGAATTG
*
45191122 TGAGTGAATTGA
1 TGAGAGAATTGA
45191134 AAAAGTGGGA
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
32 2 0.05
33 35 0.95
ACGTcount: A:0.41, C:0.00, G:0.35, T:0.24
Consensus pattern (33 bp):
TGAGAGAATTGAGTAAGAATTAAGAGAGAATTG
Found at i:45198128 original size:15 final size:15
Alignment explanation
Indices: 45198108--45198140 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
45198098 TCGAAATAGT
45198108 TGATAATTGCTTAAA
1 TGATAATTGCTTAAA
45198123 TGATAATTGCTTAAA
1 TGATAATTGCTTAAA
45198138 TGA
1 TGA
45198141 AACTATGTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.39, C:0.06, G:0.15, T:0.39
Consensus pattern (15 bp):
TGATAATTGCTTAAA
Found at i:45198689 original size:18 final size:18
Alignment explanation
Indices: 45198662--45198702 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
45198652 GATTGGGAAA
*
45198662 AGGA-ACATATAAGGGTT
1 AGGATACATATAAGGGCT
45198679 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
45198697 AGGATA
1 AGGATA
45198703 TGCACCTGGC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 4 0.18
18 18 0.82
ACGTcount: A:0.41, C:0.07, G:0.29, T:0.22
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:45200483 original size:32 final size:32
Alignment explanation
Indices: 45200447--45200507 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
45200437 ATTTAATTAA
*
45200447 AGAGA-ATTTTGAGAAATTTAGGGAGAAATTTG
1 AGAGATATTTTGAGAAATTT-GGAAGAAATTTG
*
45200479 AGAGATTTTTTGAGAAATTTGGAAGAAAT
1 AGAGATATTTTGAGAAATTTGGAAGAAAT
45200508 GTTGTTTGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
32 13 0.50
33 13 0.50
ACGTcount: A:0.41, C:0.00, G:0.26, T:0.33
Consensus pattern (32 bp):
AGAGATATTTTGAGAAATTTGGAAGAAATTTG
Found at i:45205830 original size:17 final size:17
Alignment explanation
Indices: 45205780--45205837 Score: 55
Period size: 17 Copynumber: 3.2 Consensus size: 17
45205770 GGGAGAGAAG
*
45205780 TAAAAGTTTAGGAGGAAAA
1 TAAAAGTTT--GAGGGAAA
*
45205799 TAAAAAGTTT-TGGGAAA
1 T-AAAAGTTTGAGGGAAA
45205816 TAAAAGTTTGAGGGAAA
1 TAAAAGTTTGAGGGAAA
45205833 GTAAA
1 -TAAA
45205838 TAGGGGGAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
16 8 0.24
17 12 0.36
18 4 0.12
19 1 0.03
20 8 0.24
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (17 bp):
TAAAAGTTTGAGGGAAA
Found at i:45212331 original size:9 final size:9
Alignment explanation
Indices: 45212301--45212348 Score: 51
Period size: 9 Copynumber: 5.0 Consensus size: 9
45212291 CTTTTTCCAA
45212301 AAATAAAAAT
1 AAAT-AAAAT
45212311 ACAATAAAAT
1 A-AATAAAAT
*
45212321 AAATAACAT
1 AAATAAAAT
45212330 AAATAAATAT
1 AAATAAA-AT
*
45212340 ATATAAAAT
1 AAATAAAAT
45212349 TAAAAACAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 15 0.45
10 15 0.45
11 3 0.09
ACGTcount: A:0.71, C:0.04, G:0.00, T:0.25
Consensus pattern (9 bp):
AAATAAAAT
Found at i:45219681 original size:25 final size:25
Alignment explanation
Indices: 45219647--45219730 Score: 89
Period size: 25 Copynumber: 3.4 Consensus size: 25
45219637 TTCAACTCTT
*
45219647 ATGAGCTTCCTGA-TACTCAGCTCGC
1 ATGAGCTTCC-CATTACTCAGCTCGC
**
45219672 ATGAGCTTCCCATTGTTCAGCTCGC
1 ATGAGCTTCCCATTACTCAGCTCGC
* ** *
45219697 ATGAGCTTTCCATTGTTCAGCTCAC
1 ATGAGCTTCCCATTACTCAGCTCGC
45219722 ATGAGCTTC
1 ATGAGCTTC
45219731 TTGTTATTCA
Statistics
Matches: 52, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
24 1 0.02
25 51 0.98
ACGTcount: A:0.19, C:0.30, G:0.19, T:0.32
Consensus pattern (25 bp):
ATGAGCTTCCCATTACTCAGCTCGC
Found at i:45219740 original size:25 final size:25
Alignment explanation
Indices: 45219663--45219754 Score: 103
Period size: 25 Copynumber: 3.7 Consensus size: 25
45219653 TTCCTGATAC
*
45219663 TCAGCTCGCATGAGCTTCCCATTGT
1 TCAGCTCGCATGAGCTTCCCATTAT
* *
45219688 TCAGCTCGCATGAGCTTTCCATTGT
1 TCAGCTCGCATGAGCTTCCCATTAT
* ***
45219713 TCAGCTCACATGAGCTTCTTGTTAT
1 TCAGCTCGCATGAGCTTCCCATTAT
* *
45219738 TCAGCTCGGAGGAGCTT
1 TCAGCTCGCATGAGCTT
45219755 ACTGTGTATA
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 57 1.00
ACGTcount: A:0.17, C:0.27, G:0.22, T:0.34
Consensus pattern (25 bp):
TCAGCTCGCATGAGCTTCCCATTAT
Found at i:45221079 original size:25 final size:25
Alignment explanation
Indices: 45221051--45221100 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
45221041 ATATGGTTTT
45221051 TATATTAT-TTATAAATGTTATAATA
1 TATATTATATTAT-AATGTTATAATA
45221076 TATATTATATTATAATGTTATAATA
1 TATATTATATTATAATGTTATAATA
45221101 AAACAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (25 bp):
TATATTATATTATAATGTTATAATA
Found at i:45222117 original size:43 final size:43
Alignment explanation
Indices: 45221988--45222121 Score: 137
Period size: 43 Copynumber: 3.1 Consensus size: 43
45221978 ATAGGATTCC
* * *
45221988 GATATGTGTTTTCGTGTAAGACCACATCTGGGACGTTGGCATC
1 GATATGTGTTTACATGTAAGACCACATCTGGGACGTTGGCATT
*** ** *
45222031 GACT-TGTGTTTACATGTAAGACCTTTTCTGGGACAATGACATT
1 GA-TATGTGTTTACATGTAAGACCACATCTGGGACGTTGGCATT
* * *
45222074 GATATGTGATTACATGTAAGACCACGTCCGGGACGTTGGCATT
1 GATATGTGTTTACATGTAAGACCACATCTGGGACGTTGGCATT
45222117 G-TATG
1 GATATG
45222122 AGCCTTCCGA
Statistics
Matches: 72, Mismatches: 17, Indels: 5
0.77 0.18 0.05
Matches are distributed among these distances:
42 5 0.07
43 66 0.92
44 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (43 bp):
GATATGTGTTTACATGTAAGACCACATCTGGGACGTTGGCATT
Found at i:45236958 original size:16 final size:16
Alignment explanation
Indices: 45236932--45236974 Score: 61
Period size: 16 Copynumber: 2.7 Consensus size: 16
45236922 TGTACTTGGC
*
45236932 ATTTATATATATTTA-
1 ATTTTTATATATTTAT
45236947 ATTTTTTATATATTTAT
1 A-TTTTTATATATTTAT
45236964 ATTTTTATATA
1 ATTTTTATATA
45236975 AACAAATCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 1 0.04
16 23 0.92
17 1 0.04
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
ATTTTTATATATTTAT
Found at i:45237738 original size:53 final size:53
Alignment explanation
Indices: 45237673--45237781 Score: 166
Period size: 53 Copynumber: 2.1 Consensus size: 53
45237663 TCATAAATGT
* *
45237673 AAATATGAATATTTTATAGTACAACCTGCTATAGTAGATGTTTGACTGTATCA
1 AAATATGAATATTTTATAGTACAACCTGCTACAGTAGATGTTTGACTGTACCA
* *
45237726 AAATAT-AGATATTTTATAGTACAACTTGTTACAGTAGATGTTTGACTGTACCA
1 AAATATGA-ATATTTTATAGTACAACCTGCTACAGTAGATGTTTGACTGTACCA
45237779 AAA
1 AAA
45237782 AATTAATTCA
Statistics
Matches: 51, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
52 1 0.02
53 50 0.98
ACGTcount: A:0.38, C:0.11, G:0.15, T:0.37
Consensus pattern (53 bp):
AAATATGAATATTTTATAGTACAACCTGCTACAGTAGATGTTTGACTGTACCA
Found at i:45238525 original size:33 final size:33
Alignment explanation
Indices: 45238467--45238529 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
45238457 AGACTTTATC
* *
45238467 TTCTGTGTTTACTATCCTAACGGACTATCTTTG
1 TTCTGTGTTTACTACCCCAACGGACTATCTTTG
* *
45238500 TTCTGTGTTTACTGCCCCAATGGACTATCT
1 TTCTGTGTTTACTACCCCAACGGACTATCT
45238530 CTGTGGATGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.17, C:0.24, G:0.16, T:0.43
Consensus pattern (33 bp):
TTCTGTGTTTACTACCCCAACGGACTATCTTTG
Found at i:45245491 original size:20 final size:20
Alignment explanation
Indices: 45245437--45245492 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 20
45245427 AATCTCGTTT
* **
45245437 TAAAATTATTGATACTTTTA
1 TAAAAATATTGATACTCATA
**
45245457 TAAAAATATCAATACTCATA
1 TAAAAATATTGATACTCATA
45245477 TAAAAATATTGATACT
1 TAAAAATATTGATACT
45245493 TACTGGGTTT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.48, C:0.09, G:0.04, T:0.39
Consensus pattern (20 bp):
TAAAAATATTGATACTCATA
Found at i:45250245 original size:27 final size:27
Alignment explanation
Indices: 45250214--45250269 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
45250204 ATTATTGTTT
45250214 ATTAGTGCTTAATTGACAAACAATTCA
1 ATTAGTGCTTAATTGACAAACAATTCA
45250241 ATTAGTGCTTAATTGACAAACAATTCA
1 ATTAGTGCTTAATTGACAAACAATTCA
45250268 AT
1 AT
45250270 CTTGTAAGGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.41, C:0.14, G:0.11, T:0.34
Consensus pattern (27 bp):
ATTAGTGCTTAATTGACAAACAATTCA
Found at i:45261524 original size:7 final size:7
Alignment explanation
Indices: 45261512--45261537 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
45261502 AATGAATATG
45261512 GCTAATT
1 GCTAATT
45261519 GCTAATT
1 GCTAATT
45261526 GCTAATT
1 GCTAATT
45261533 GCTAA
1 GCTAA
45261538 ACATGGAGGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (7 bp):
GCTAATT
Found at i:45266280 original size:17 final size:17
Alignment explanation
Indices: 45266227--45266287 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
45266217 TCATGCTAAT
*
45266227 ATTTATTATTTTTATGAA
1 ATTT-TTATTTTTATTAA
*
45266245 TTTTTTATATTATCT-TTAA
1 ATTTTTAT-TT-T-TATTAA
45266264 ATTTTTATTTTTATTAA
1 ATTTTTATTTTTATTAA
45266281 ATATTTT
1 AT-TTTT
45266288 TATAATCTTT
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
16 1 0.03
17 11 0.31
18 11 0.31
19 11 0.31
20 1 0.03
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (17 bp):
ATTTTTATTTTTATTAA
Found at i:45266286 original size:19 final size:19
Alignment explanation
Indices: 45266224--45266290 Score: 59
Period size: 19 Copynumber: 3.6 Consensus size: 19
45266214 AATTCATGCT
*
45266224 AATATTTATTATTTTTA-TG
1 AATATTT-TTATTTTTATTA
* * *
45266243 AAT-TTTTTATATTATCTTT
1 AATATTTTTAT-TTTTATTA
45266262 AA-ATTTTTATTTTTATTA
1 AATATTTTTATTTTTATTA
45266280 AATATTTTTAT
1 AATATTTTTAT
45266291 AATCTTTTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
17 4 0.11
18 13 0.34
19 21 0.55
ACGTcount: A:0.31, C:0.01, G:0.01, T:0.66
Consensus pattern (19 bp):
AATATTTTTATTTTTATTA
Found at i:45266296 original size:36 final size:37
Alignment explanation
Indices: 45266227--45266303 Score: 97
Period size: 37 Copynumber: 2.1 Consensus size: 37
45266217 TCATGCTAAT
*
45266227 ATTTATTATTTTTATGAATTTTTTATATTATC-TTTAA
1 ATTTATTATTTTTATAAATTTTTTATA-TATCTTTTAA
45266264 ATTT-TTATTTTTATTAAATATTTTTATA-ATCTTTTAA
1 ATTTATTATTTTTA-TAAAT-TTTTTATATATCTTTTAA
45266301 ATT
1 ATT
45266304 ATGTTTTGAC
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
36 12 0.33
37 16 0.44
38 8 0.22
ACGTcount: A:0.31, C:0.03, G:0.01, T:0.65
Consensus pattern (37 bp):
ATTTATTATTTTTATAAATTTTTTATATATCTTTTAA
Found at i:45283102 original size:3 final size:3
Alignment explanation
Indices: 45283094--45283134 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
45283084 TCGATAGGAT
45283094 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
45283135 CTACACGCAG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:45286265 original size:20 final size:20
Alignment explanation
Indices: 45286240--45286283 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
45286230 AATGAGCTCA
45286240 TATTGTGGGTGACCTCATCT
1 TATTGTGGGTGACCTCATCT
*
45286260 TATTGTGGGTGACCTCGTCT
1 TATTGTGGGTGACCTCATCT
45286280 TATT
1 TATT
45286284 CTAAGCTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.14, C:0.18, G:0.25, T:0.43
Consensus pattern (20 bp):
TATTGTGGGTGACCTCATCT
Found at i:45286325 original size:64 final size:65
Alignment explanation
Indices: 45286195--45286325 Score: 246
Period size: 64 Copynumber: 2.0 Consensus size: 65
45286185 AATGAGCTCA
45286195 TATTGTGGGTGACCTCGTCTTATTCTAAGCTTTAAAATGAGCTCATATTGTGGGTGACCTCATCT
1 TATTGTGGGTGACCTCGTCTTATTCTAAGCTTTAAAATGAGCTCATATTGTGGGTGACCTCATCT
*
45286260 TATTGTGGGTGACCTCGTCTTATTCTAAGC-TTAAAATGAGCTCATATTGTGGGTGACCTCGTCT
1 TATTGTGGGTGACCTCGTCTTATTCTAAGCTTTAAAATGAGCTCATATTGTGGGTGACCTCATCT
45286324 TA
1 TA
45286326 GATTTGCAAT
Statistics
Matches: 65, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
64 35 0.54
65 30 0.46
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.38
Consensus pattern (65 bp):
TATTGTGGGTGACCTCGTCTTATTCTAAGCTTTAAAATGAGCTCATATTGTGGGTGACCTCATCT
Found at i:45294285 original size:32 final size:31
Alignment explanation
Indices: 45294222--45294290 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 31
45294212 TTGATTAATC
*
45294222 TTAGTCCTTGTATTTTTCGAGTTGGTCAATT
1 TTAGTCCTTGTATTTTTCGAGTTGGTAAATT
* *
45294253 TTAGTCCTTTTTATTTTTCGAGTT-TTGAAATT
1 TTAGTCC-TTGTATTTTTCGAGTTGGT-AAATT
45294285 TTAGTC
1 TTAGTC
45294291 TTGATCCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
31 8 0.24
32 25 0.76
ACGTcount: A:0.17, C:0.12, G:0.16, T:0.55
Consensus pattern (31 bp):
TTAGTCCTTGTATTTTTCGAGTTGGTAAATT
Found at i:45296796 original size:22 final size:22
Alignment explanation
Indices: 45296770--45296842 Score: 55
Period size: 22 Copynumber: 3.2 Consensus size: 22
45296760 ATACCTACTT
45296770 TTCACAACTCAGTATGGTTTTC
1 TTCACAACTCAGTATGGTTTTC
*
45296792 TTCACTGAAACATCA-TACAT-G-CTT-
1 TTCAC---AAC-TCAGT--ATGGTTTTC
45296816 TTCACAACTCAGTATGGTTTTC
1 TTCACAACTCAGTATGGTTTTC
45296838 TTCAC
1 TTCAC
45296843 TGAAATACCA
Statistics
Matches: 39, Mismatches: 2, Indels: 20
0.64 0.03 0.33
Matches are distributed among these distances:
19 2 0.05
20 4 0.10
21 6 0.15
22 10 0.26
24 5 0.13
25 6 0.15
26 4 0.10
27 2 0.05
ACGTcount: A:0.26, C:0.25, G:0.11, T:0.38
Consensus pattern (22 bp):
TTCACAACTCAGTATGGTTTTC
Found at i:45296796 original size:46 final size:46
Alignment explanation
Indices: 45296729--45296867 Score: 233
Period size: 46 Copynumber: 3.0 Consensus size: 46
45296719 ACATTGCTAT
45296729 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* * *
45296775 AACTCAGTATGGTTTTCTTCACTGAAACATCATACATGCTTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
* *
45296821 AACTCAGTATGGTTTTCTTCACTGAAATACCATACCTACGTTTCAC
1 AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
45296867 A
1 A
45296868 CTTCTCCATC
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 85 1.00
ACGTcount: A:0.29, C:0.26, G:0.10, T:0.35
Consensus pattern (46 bp):
AACTCAGTATGGTTTTCTTCACTGAAACACCATACCTACTTTTCAC
Found at i:45298071 original size:16 final size:17
Alignment explanation
Indices: 45298025--45298072 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
45298015 AAATTCTTTT
45298025 TAAATCACAAAATTCAA
1 TAAATCACAAAATTCAA
*
45298042 TAAATCACAAAATTCAC
1 TAAATCACAAAATTCAA
*
45298059 TAATTCA-AAAATTC
1 TAAATCACAAAATTC
45298073 TTCTAAATTC
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 7 0.24
17 22 0.76
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (17 bp):
TAAATCACAAAATTCAA
Found at i:45300601 original size:31 final size:32
Alignment explanation
Indices: 45300556--45300615 Score: 95
Period size: 31 Copynumber: 1.9 Consensus size: 32
45300546 TCATTTAGAC
*
45300556 TCTTTTTCAAAAGGTTGATGATCAAATTTAAT
1 TCTTTTTCAAAAGGTTGAAGATCAAATTTAAT
*
45300588 TCTTTTT-AAAAGGTTGAAGGTCAAATTT
1 TCTTTTTCAAAAGGTTGAAGATCAAATTT
45300616 GACTAAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
31 19 0.73
32 7 0.27
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.43
Consensus pattern (32 bp):
TCTTTTTCAAAAGGTTGAAGATCAAATTTAAT
Found at i:45301749 original size:22 final size:22
Alignment explanation
Indices: 45301724--45301766 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
45301714 TATCCAAATA
45301724 ATAATAACAAAATAGTAGCAAC
1 ATAATAACAAAATAGTAGCAAC
***
45301746 ATAATAGTGAAATAGTAGCAA
1 ATAATAACAAAATAGTAGCAA
45301767 AATAGTGAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAATAACAAAATAGTAGCAAC
Found at i:45323039 original size:18 final size:18
Alignment explanation
Indices: 45323016--45323055 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 18
45323006 TATTTATTTT
45323016 AAATAAAAAATA-AAAATC
1 AAAT-AAAAATACAAAATC
45323034 AAATAAAAATACAAAATC
1 AAATAAAAATACAAAATC
45323052 AAAT
1 AAAT
45323056 TCGAATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (18 bp):
AAATAAAAATACAAAATC
Found at i:45323049 original size:24 final size:25
Alignment explanation
Indices: 45323017--45323068 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
45323007 ATTTATTTTA
45323017 AATAAAAAATAAAAATCAAATA-AA
1 AATAAAAAATAAAAATCAAATATAA
* * * *
45323041 AATACAAAATCAAATTCGAATATAA
1 AATAAAAAATAAAAATCAAATATAA
45323066 AAT
1 AAT
45323069 TCGTGAAACT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 18 0.78
25 5 0.22
ACGTcount: A:0.69, C:0.08, G:0.02, T:0.21
Consensus pattern (25 bp):
AATAAAAAATAAAAATCAAATATAA
Found at i:45324474 original size:22 final size:21
Alignment explanation
Indices: 45324449--45324492 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 21
45324439 TATTTTTATG
45324449 TAAAT-TTAATTATAAAAATATA
1 TAAATATTAA-TAT-AAAATATA
45324471 TAAATATTAATATAAAATATA
1 TAAATATTAATATAAAATATA
45324492 T
1 T
45324493 TTTTATCATG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 9 0.43
22 8 0.38
23 4 0.19
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
TAAATATTAATATAAAATATA
Found at i:45336723 original size:26 final size:26
Alignment explanation
Indices: 45336693--45336743 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
45336683 TTTGGCAATA
45336693 CTTTTGAAAAATGTTGTGGAAAAGTG
1 CTTTTGAAAAATGTTGTGGAAAAGTG
* * * *
45336719 CTTTTGAGAAGTGTTTTTGAAAAGT
1 CTTTTGAAAAATGTTGTGGAAAAGT
45336744 TTGGTTTAAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.31, C:0.04, G:0.25, T:0.39
Consensus pattern (26 bp):
CTTTTGAAAAATGTTGTGGAAAAGTG
Found at i:45336730 original size:13 final size:13
Alignment explanation
Indices: 45336693--45336743 Score: 50
Period size: 13 Copynumber: 3.9 Consensus size: 13
45336683 TTTGGCAATA
*
45336693 CTTTTGAAAAATG
1 CTTTTGAAAAGTG
*
45336706 -TTGTGGAAAAGTG
1 CTT-TTGAAAAGTG
*
45336719 CTTTTGAGAAGTG
1 CTTTTGAAAAGTG
*
45336732 TTTTTGAAAAGT
1 CTTTTGAAAAGT
45336744 TTGGTTTAAA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
12 2 0.07
13 26 0.87
14 2 0.07
ACGTcount: A:0.31, C:0.04, G:0.25, T:0.39
Consensus pattern (13 bp):
CTTTTGAAAAGTG
Found at i:45343797 original size:16 final size:14
Alignment explanation
Indices: 45343762--45343800 Score: 51
Period size: 16 Copynumber: 2.6 Consensus size: 14
45343752 AAAAATACAC
45343762 ATTTTATTTATTTA
1 ATTTTATTTATTTA
*
45343776 ATTTTATCTTATTTTT
1 ATTTTAT-TTA-TTTA
45343792 ATTTTATTT
1 ATTTTATTT
45343801 CGCAGGTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
14 7 0.32
15 5 0.23
16 10 0.45
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (14 bp):
ATTTTATTTATTTA
Found at i:45347446 original size:20 final size:20
Alignment explanation
Indices: 45347423--45347476 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
45347413 TAATTTGTCT
*
45347423 TGTCTTAATTAAATTAAATG
1 TGTCTTAATTAAATTAAATA
* ** *
45347443 TGTCTTGATTTTATTAAGTA
1 TGTCTTAATTAAATTAAATA
45347463 TGTCTTAAATTAAA
1 TGTCTT-AATTAAA
45347477 ACATGAATTA
Statistics
Matches: 25, Mismatches: 8, Indels: 1
0.74 0.24 0.03
Matches are distributed among these distances:
20 21 0.84
21 4 0.16
ACGTcount: A:0.35, C:0.06, G:0.11, T:0.48
Consensus pattern (20 bp):
TGTCTTAATTAAATTAAATA
Found at i:45356849 original size:10 final size:10
Alignment explanation
Indices: 45356834--45356866 Score: 57
Period size: 10 Copynumber: 3.2 Consensus size: 10
45356824 GGAAATCATC
45356834 AAATTTTAAA
1 AAATTTTAAA
45356844 AAATTTTAAAA
1 AAATTTT-AAA
45356855 AAATTTTAAA
1 AAATTTTAAA
45356865 AA
1 AA
45356867 TTATTCATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 12 0.55
11 10 0.45
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (10 bp):
AAATTTTAAA
Found at i:45356857 original size:11 final size:11
Alignment explanation
Indices: 45356834--45356866 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
45356824 GGAAATCATC
45356834 AAATTTT-AAA
1 AAATTTTAAAA
45356844 AAATTTTAAAA
1 AAATTTTAAAA
45356855 AAATTTTAAAA
1 AAATTTTAAAA
45356866 A
1 A
45356867 TTATTCATGT
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
10 7 0.32
11 15 0.68
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
AAATTTTAAAA
Found at i:45359082 original size:6 final size:6
Alignment explanation
Indices: 45359071--45359096 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
45359061 CAATATCTCC
45359071 AAAGCA AAAGCA AAAGCA AAAGCA AA
1 AAAGCA AAAGCA AAAGCA AAAGCA AA
45359097 CACACACATG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.69, C:0.15, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAGCA
Found at i:45363067 original size:3 final size:3
Alignment explanation
Indices: 45363053--45363139 Score: 95
Period size: 3 Copynumber: 28.7 Consensus size: 3
45363043 TCGCTGCTAC
* *
45363053 TAT TACT TAT TAT TAT TAT TAT TAT TAT TAC TAT TAT TAC TAT TAT
1 TAT TA-T TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
45363099 TAT TAT AAT TGT TAT AAT TAT AAT T-T TAT TATT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TA
45363140 CTATACCTAC
Statistics
Matches: 69, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
2 2 0.03
3 61 0.88
4 6 0.09
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:45367387 original size:39 final size:40
Alignment explanation
Indices: 45367344--45367447 Score: 111
Period size: 44 Copynumber: 2.5 Consensus size: 40
45367334 TCCTTTATGT
45367344 TATTACACCTCTATTCCATTCAACCAAACACAAGA-TTAC
1 TATTACACCTCTATTCCATTCAACCAAACACAAGATTTAC
* *** *
45367383 TATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTGC
1 TATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTAC
45367428 TATTACACCTCTATTCCATT
1 TATTACACCTCTATTCCATT
45367448 ACACCTCTAA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
39 14 0.26
40 5 0.09
44 17 0.32
45 17 0.32
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.35
Consensus pattern (40 bp):
TATTACACCTCTATTCCATTCAACCAAACACAAGATTTAC
Found at i:45367441 original size:45 final size:44
Alignment explanation
Indices: 45367360--45367450 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 44
45367350 ACCTCTATTC
*
45367360 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCATTA
*** *
45367404 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTATTCCATTA
45367449 CA
1 CA
45367451 CCTCTAATCC
Statistics
Matches: 41, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 16 0.39
45 25 0.61
ACGTcount: A:0.34, C:0.29, G:0.05, T:0.32
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTATTCCATTA
Found at i:45367450 original size:16 final size:16
Alignment explanation
Indices: 45367429--45367475 Score: 67
Period size: 16 Copynumber: 2.9 Consensus size: 16
45367419 TTGATTTGCT
*
45367429 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
45367445 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
* *
45367461 AATACACATCTAATC
1 ATTACACCTCTAATC
45367476 TAATACAGCG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.34, C:0.34, G:0.00, T:0.32
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:45367480 original size:16 final size:16
Alignment explanation
Indices: 45367431--45367482 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
45367421 GATTTGCTAT
* * *
45367431 TACACCTCTATTCCAT
1 TACACATCTAATCCAA
*
45367447 TACACCTCTAATCCAA
1 TACACATCTAATCCAA
*
45367463 TACACATCTAATCTAA
1 TACACATCTAATCCAA
45367479 TACA
1 TACA
45367483 GCGAACCAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 32 1.00
ACGTcount: A:0.37, C:0.33, G:0.00, T:0.31
Consensus pattern (16 bp):
TACACATCTAATCCAA
Found at i:45372057 original size:19 final size:18
Alignment explanation
Indices: 45372035--45372088 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
45372025 AATACGAAAT
*
45372035 AATTCAAAATAATTTTTAA
1 AATTCAAAAT-ATTTATAA
*
45372054 AATTCAATATATTTATAAA
1 AATTCAAAATATTTAT-AA
*
45372073 AATTCTAAAT-TTTATA
1 AATTCAAAATATTTATA
45372089 TATTTTAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
17 1 0.03
18 10 0.33
19 19 0.63
ACGTcount: A:0.50, C:0.06, G:0.00, T:0.44
Consensus pattern (18 bp):
AATTCAAAATATTTATAA
Found at i:45372072 original size:18 final size:19
Alignment explanation
Indices: 45372035--45372073 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
45372025 AATACGAAAT
*
45372035 AATTCAAAATAATTTTTAA
1 AATTCAAAATAATTTATAA
*
45372054 AATTCAATAT-ATTTATAA
1 AATTCAAAATAATTTATAA
45372072 AA
1 AA
45372074 ATTCTAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.41
Consensus pattern (19 bp):
AATTCAAAATAATTTATAA
Found at i:45372281 original size:16 final size:16
Alignment explanation
Indices: 45372260--45372290 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
45372250 TGAAAAAAGT
45372260 TTTCAAATATATATGA
1 TTTCAAATATATATGA
*
45372276 TTTCAAATTTATATG
1 TTTCAAATATATATG
45372291 TTGTAATATG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (16 bp):
TTTCAAATATATATGA
Found at i:45372727 original size:14 final size:15
Alignment explanation
Indices: 45372699--45372732 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
45372689 ATTTGATCAA
*
45372699 TTTTAATTTTATATT
1 TTTTAAATTTATATT
45372714 TTTTAAATTT-TATT
1 TTTTAAATTTATATT
45372728 TTTTA
1 TTTTA
45372733 TTCAATTTAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 9 0.50
15 9 0.50
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (15 bp):
TTTTAAATTTATATT
Found at i:45374862 original size:2 final size:2
Alignment explanation
Indices: 45374855--45374881 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
45374845 ATTGACCGCT
45374855 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
45374882 TCGTCCTGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:45383032 original size:16 final size:16
Alignment explanation
Indices: 45383011--45383048 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
45383001 AGATTATCGA
45383011 AAGCTCGATTGGTTGG
1 AAGCTCGATTGGTTGG
45383027 AAGCTCGATTGGTTGG
1 AAGCTCGATTGGTTGG
45383043 AAGCTC
1 AAGCTC
45383049 ATCGGAGACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.21, C:0.16, G:0.34, T:0.29
Consensus pattern (16 bp):
AAGCTCGATTGGTTGG
Found at i:45402307 original size:2 final size:2
Alignment explanation
Indices: 45402294--45402336 Score: 59
Period size: 2 Copynumber: 21.5 Consensus size: 2
45402284 AGGAGGGATG
* * *
45402294 TA TA TC TA TA TA TA TA TA GA TA TA TA GA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
45402336 T
1 T
45402337 GCTAAATATC
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (2 bp):
TA
Found at i:45403545 original size:27 final size:27
Alignment explanation
Indices: 45403485--45403545 Score: 70
Period size: 27 Copynumber: 2.3 Consensus size: 27
45403475 GAATAAAAAG
* **
45403485 GCGGCACCAATGGTGCTTTTCTCATTG
1 GCGGCACCAATGGTGCTTTTCCCATAA
*
45403512 GCAGCACCAATGGTG-TCTTTCCCATAA
1 GCGGCACCAATGGTGCT-TTTCCCATAA
45403539 GCGGCAC
1 GCGGCAC
45403546 AGGACTAAAA
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.04
27 27 0.96
ACGTcount: A:0.20, C:0.30, G:0.25, T:0.26
Consensus pattern (27 bp):
GCGGCACCAATGGTGCTTTTCCCATAA
Found at i:45403792 original size:40 final size:40
Alignment explanation
Indices: 45403748--45403827 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
45403738 AAGCCCTCAA
*
45403748 CCTATTTTTATAGTTAAATAAGCTCTTAATCTATTATTTT
1 CCTATTTTTATAGTTAAATAAGCTCTTAATCTATGATTTT
*
45403788 CCTATTTTTGTAGTTAAATAAGCTCTTAATCTATGATTTT
1 CCTATTTTTATAGTTAAATAAGCTCTTAATCTATGATTTT
45403828 TACTCATAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.29, C:0.12, G:0.07, T:0.51
Consensus pattern (40 bp):
CCTATTTTTATAGTTAAATAAGCTCTTAATCTATGATTTT
Found at i:45405748 original size:39 final size:39
Alignment explanation
Indices: 45405679--45405753 Score: 105
Period size: 39 Copynumber: 1.9 Consensus size: 39
45405669 ATACTTTAAA
* *
45405679 TTTATATATATCATTTATCACAATACTAATGAATTTGAG
1 TTTAAATATATCATATATCACAATACTAATGAATTTGAG
* * *
45405718 TTTAAATATTTCATATATCATAATATTAATGAATTT
1 TTTAAATATATCATATATCACAATACTAATGAATTT
45405754 AAATACATAT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
39 31 1.00
ACGTcount: A:0.40, C:0.08, G:0.05, T:0.47
Consensus pattern (39 bp):
TTTAAATATATCATATATCACAATACTAATGAATTTGAG
Found at i:45408606 original size:19 final size:19
Alignment explanation
Indices: 45408576--45408621 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
45408566 CACGCTAGTA
*
45408576 TTTAATTAATTTTTATATTT
1 TTTAA-TAATTTTAATATTT
45408596 TTTAATAATTTTAATATTT
1 TTTAATAATTTTAATATTT
45408615 TTTAATA
1 TTTAATA
45408622 TTAAAAATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 20 0.80
20 5 0.20
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTAATAATTTTAATATTT
Found at i:45408607 original size:10 final size:10
Alignment explanation
Indices: 45408576--45408621 Score: 51
Period size: 9 Copynumber: 4.7 Consensus size: 10
45408566 CACGCTAGTA
45408576 TTTAATTAATT
1 TTTAA-TAATT
*
45408587 TTT-ATATTT
1 TTTAATAATT
45408596 TTTAATAA-T
1 TTTAATAATT
*
45408605 TTTAATATTT
1 TTTAATAATT
45408615 TTTAATA
1 TTTAATA
45408622 TTAAAAATAG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
9 15 0.50
10 12 0.40
11 3 0.10
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
TTTAATAATT
Found at i:45408622 original size:10 final size:10
Alignment explanation
Indices: 45408585--45408646 Score: 58
Period size: 10 Copynumber: 6.5 Consensus size: 10
45408575 ATTTAATTAA
45408585 TTTTT-ATAT
1 TTTTTAATAT
45408594 TTTTTAATA-
1 TTTTTAATAT
*
45408603 ATTTTAATAT
1 TTTTTAATAT
45408613 TTTTTAATA-
1 TTTTTAATAT
*** *
45408622 TTAAAAATAG
1 TTTTTAATAT
45408632 TTTTTAATAT
1 TTTTTAATAT
45408642 TTTTT
1 TTTTT
45408647 TTGAATTTTT
Statistics
Matches: 41, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
9 19 0.46
10 22 0.54
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.65
Consensus pattern (10 bp):
TTTTTAATAT
Found at i:45408630 original size:19 final size:18
Alignment explanation
Indices: 45408590--45408642 Score: 61
Period size: 19 Copynumber: 2.8 Consensus size: 18
45408580 ATTAATTTTT
**
45408590 ATATTTTTTAATAATTTTA
1 ATATTTTTTAAT-ATTAAA
45408609 ATATTTTTTAATATTAAAA
1 ATATTTTTTAATATT-AAA
*
45408628 ATAGTTTTTAATATT
1 ATATTTTTTAATATT
45408643 TTTTTTGAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
18 3 0.10
19 27 0.90
ACGTcount: A:0.40, C:0.00, G:0.02, T:0.58
Consensus pattern (18 bp):
ATATTTTTTAATATTAAA
Found at i:45409943 original size:15 final size:17
Alignment explanation
Indices: 45409901--45409947 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 17
45409891 TGTTGAAAAG
45409901 TTTGAATTTATAATACTT
1 TTTGAATTT-TAATACTT
*
45409919 TTTTATATTTTAA-AC-T
1 TTTGA-ATTTTAATACTT
45409935 TTTGAATTTTAAT
1 TTTGAATTTTAAT
45409948 TTTAAAAGTG
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
15 7 0.28
16 5 0.20
17 2 0.08
18 7 0.28
19 4 0.16
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (17 bp):
TTTGAATTTTAATACTT
Found at i:45414934 original size:18 final size:18
Alignment explanation
Indices: 45414911--45414947 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
45414901 TCAATGTTTT
45414911 ATTTTAATATTT-TTATAC
1 ATTTTAAT-TTTATTATAC
45414929 ATTTTAATTTTATTATAC
1 ATTTTAATTTTATTATAC
45414947 A
1 A
45414948 CACTTTTTTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 3 0.17
18 15 0.83
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.59
Consensus pattern (18 bp):
ATTTTAATTTTATTATAC
Found at i:45415072 original size:5 final size:5
Alignment explanation
Indices: 45415062--45415092 Score: 53
Period size: 5 Copynumber: 6.0 Consensus size: 5
45415052 TGTTTTAAAA
45415062 TTATT TTATT TTATTT TTATT TTATT TTATT
1 TTATT TTATT TTA-TT TTATT TTATT TTATT
45415093 CATTGATTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 20 0.80
6 5 0.20
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TTATT
Found at i:45415079 original size:11 final size:12
Alignment explanation
Indices: 45415065--45415116 Score: 56
Period size: 11 Copynumber: 4.3 Consensus size: 12
45415055 TTTAAAATTA
45415065 TTTTATT-TTAT
1 TTTTATTCTTAT
45415076 TTTTATT-TTA-
1 TTTTATTCTTAT
45415086 TTTTATTCATTGAT
1 TTTTATTC-TT-AT
45415100 TTCTTATTCTTAT
1 TT-TTATTCTTAT
45415113 TTTT
1 TTTT
45415117 TCATTATTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
10 7 0.19
11 10 0.28
12 4 0.11
13 5 0.14
14 4 0.11
15 6 0.17
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.75
Consensus pattern (12 bp):
TTTTATTCTTAT
Found at i:45415091 original size:16 final size:16
Alignment explanation
Indices: 45415062--45415092 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
45415052 TGTTTTAAAA
45415062 TTATTTTATTTTATTT
1 TTATTTTATTTTATTT
45415078 TTATTTTATTTTATT
1 TTATTTTATTTTATT
45415093 CATTGATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (16 bp):
TTATTTTATTTTATTT
Found at i:45415300 original size:30 final size:28
Alignment explanation
Indices: 45415266--45415337 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 28
45415256 GTAATTTTTT
*
45415266 ATAGTTAGGTGACCAAAAAGAAATTTGCTA
1 ATAGTT-GGTGACCAAAAA-AAATTTACTA
* *
45415296 ATAGTTGAGTGACCAAAAAAATTTTATTA
1 ATAGTTG-GTGACCAAAAAAAATTTACTA
45415325 ATAGTTGGGTGAC
1 ATAGTT-GGTGAC
45415338 TATTAGTGTC
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
29 19 0.51
30 18 0.49
ACGTcount: A:0.40, C:0.08, G:0.21, T:0.31
Consensus pattern (28 bp):
ATAGTTGGTGACCAAAAAAAATTTACTA
Found at i:45420167 original size:9 final size:10
Alignment explanation
Indices: 45420148--45420172 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
45420138 CTAATATACG
45420148 AAAAAGAAAA
1 AAAAAGAAAA
45420158 AAAAAGAAAA
1 AAAAAGAAAA
45420168 AAAAA
1 AAAAA
45420173 TTTGGGTGCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAGAAAA
Found at i:45420253 original size:108 final size:107
Alignment explanation
Indices: 45420153--45420501 Score: 459
Period size: 106 Copynumber: 3.2 Consensus size: 107
45420143 ATACGAAAAA
**
45420153 GAAAAAAAAAGAAAAAAAAATTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAAACAGTAAA
1 GAAAAAAAAA-AAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAAACAGTAAA
*
45420218 AAAAATTTCTTTTTTTTCGTGTCAGAGTCAGATATAAAAATAC
65 AAAAATTTCTTTTTTTTCGTGTCAGAATCAGATATAAAAATAC
* * * *
45420261 GAAAAAAAATTTAAAAAAATTTTTTTTGGGTGCTGGCCTATCAATGGCCAGCACCCAGTGAACAG
1 GAAAAAAAA---AAAAAAA--ATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAAACAG
*
45420326 TAAAAAAATTTTTCTTTTTTTTCGTGTCAGAATCAGATATAAAAATAC
61 TAAAAAAA-ATTTCTTTTTTTTCGTGTCAGAATCAGATATAAAAATAC
* **** *
45420374 G--AAAAAAATAATTTTTTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTAAAA
1 GAAAAAAAAAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAAACAGTAAAA
45420437 AAAATTTTCCTTTTTTTTTCGTGTCAGAATCAGATATAAAAATAC
66 AAAA-TTT-C-TTTTTTTTCGTGTCAGAATCAGATATAAAAATAC
*
45420482 GAAAAAAATAAAAAAAATTT
1 GAAAAAAAAAAAAAAAATTT
45420502 ATTTCCTCCT
Statistics
Matches: 207, Mismatches: 23, Indels: 20
0.83 0.09 0.08
Matches are distributed among these distances:
106 51 0.25
107 1 0.00
108 47 0.23
110 17 0.08
111 7 0.03
112 46 0.22
113 38 0.18
ACGTcount: A:0.40, C:0.14, G:0.16, T:0.30
Consensus pattern (107 bp):
GAAAAAAAAAAAAAAAATTTTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAAACAGTAAAA
AAAATTTCTTTTTTTTCGTGTCAGAATCAGATATAAAAATAC
Found at i:45420424 original size:106 final size:105
Alignment explanation
Indices: 45420173--45420493 Score: 473
Period size: 112 Copynumber: 3.0 Consensus size: 105
45420163 GAAAAAAAAA
*
45420173 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAAACAGTAAAAAAA-ATTTCTTTTTTTTCG
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGT-AACAGTAAAAAAATTTTTCTTTTTTTTCG
*
45420237 TGTCAGAGTCAGATATAAAAATACGAAAAAAAATTTAAAAAAATTTTT
65 TGTCAGAATCAGATATAAAAATACG-AAAAAAA--T----AAATTTTT
* *
45420285 TTTGGGTGCTGGCCTATCAATGGCCAGCACCCAGTGAACAGTAAAAAAATTTTTCTTTTTTTTCG
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGT-AACAGTAAAAAAATTTTTCTTTTTTTTCG
*
45420350 TGTCAGAATCAGATATAAAAATACGAAAAAAATAATTTTTT
65 TGTCAGAATCAGATATAAAAATACGAAAAAAATAAATTTTT
*
45420391 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTACACAGTAAAAAAAATTTTCCTTTTTTTTT
1 TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTA-ACAGT-AAAAAAATTTTTC-TTTTTTTT
45420456 CGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAA
63 CGTGTCAGAATCAGATATAAAAATACGAAAAAAATAAA
45420494 AAAAATTTAT
Statistics
Matches: 195, Mismatches: 10, Indels: 12
0.90 0.05 0.06
Matches are distributed among these distances:
105 1 0.01
106 45 0.23
107 12 0.06
108 45 0.23
110 1 0.01
112 53 0.27
113 38 0.19
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (105 bp):
TTTGGGTGCTGGCCTGTCAATGGCCGGCACCCAGTAACAGTAAAAAAATTTTTCTTTTTTTTCGT
GTCAGAATCAGATATAAAAATACGAAAAAAATAAATTTTT
Found at i:45420749 original size:109 final size:108
Alignment explanation
Indices: 45420604--45420984 Score: 478
Period size: 109 Copynumber: 3.5 Consensus size: 108
45420594 CAAGTCCTAT
* * * *
45420604 AAATTTTTTTTATTTTTTTTCTTTTTTTTATATCTGATTTTGACACGAAAAAAAATAAAAAAAAA
1 AAATTTTTTTT-TATTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAA-AAAAAAAAA
45420669 ATTTTACTGTGT-ACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
64 ATTTTACTGT-TCACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
45420714 AAATTTTTTTTTATTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAAGAAAAAAAAA
1 AAATTTTTTTTTATTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAA-AAAAAAAAA
*
45420779 TTTTACTGTTCACTGGGTGCCGGCCATTGACAGGCCAACACCCA
65 TTTTACTGTTCACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
* *
45420823 AAATTTTTTTTTTTATTTTTTTCGTATTTTTATATCTGATTTTAACACG---------AAAAAAA
1 AAA--TTTTTTTTTA-TTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAAAAAAAAA
*
45420879 AATTTTACTGTTCACTGGGTGCCGGCCATTGACAGACCAGCACCCACAA
63 AATTTTACTGTTCACTGGGTGCCGGCCATTGACAGGCCAGCA-CC-C-A
* *
45420928 AAATTTTTTTAAATT-TTTTTTCGTATTTTTATATCTGACTCTGATACGAAAAAAAAA
1 AAATTTTTTT---TTATTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAA
45420985 TTTACTGTTT
Statistics
Matches: 238, Mismatches: 13, Indels: 37
0.83 0.05 0.13
Matches are distributed among these distances:
102 47 0.20
103 9 0.04
104 30 0.13
105 4 0.02
106 2 0.01
108 2 0.01
109 92 0.39
110 11 0.05
111 10 0.04
112 31 0.13
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (108 bp):
AAATTTTTTTTTATTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAAAAAAAAAAAT
TTTACTGTTCACTGGGTGCCGGCCATTGACAGGCCAGCACCCA
Found at i:45420963 original size:104 final size:102
Alignment explanation
Indices: 45420661--45421008 Score: 391
Period size: 102 Copynumber: 3.3 Consensus size: 102
45420651 AAAAAAAATA
* *
45420661 AAAAAAAAATTTTACTGTGT-ACTGGGTGCCGGCCATTGACAGGCCAGCACCC--AAAATTTTTT
1 AAAAAAAAATTTTACTGT-TCACTGGGTGCCGGCCATTGACAGACCAACACCCAAAAAATTTTTT
** * *
45420723 TTTA-TTTTTTCGTATTTTTATATCTGATTCTGACACGAAAAAAAAAG
65 TAAATTTTTTTCGTATTTTTATATCTGACTCT-A-AC--------ACG
* **
45420770 AAAAAAAAATTTTACTGTTCACTGGGTGCCGGCCATTGACAGGCCAACACCCAAAATTTTTTTTT
1 AAAAAAAAATTTTACTGTTCACTGGGTGCCGGCCATTGACAGACCAACACCCAAAAAATTTTTTT
** * *
45420835 TTATTTTTTTCGTATTTTTATATCTGATTTTAACACG
66 AAATTTTTTTCGTATTTTTATATCTGACTCTAACACG
*
45420872 AAAAAAAAATTTTACTGTTCACTGGGTGCCGGCCATTGACAGACCAGCACCCACAAAAATTTTTT
1 AAAAAAAAATTTTACTGTTCACTGGGTGCCGGCCATTGACAGACCAACACCCA-AAAAATTTTTT
* *
45420937 TAAATTTTTTTTCGTATTTTTATATCTGACTCTGATACG
65 TAAA-TTTTTTTCGTATTTTTATATCTGACTCTAACACG
*
45420976 AAAAAAAAA-TTTACTGTTTACTGGGTGCCGGCC
1 AAAAAAAAATTTTACTGTTCACTGGGTGCCGGCC
45421009 TTTTCTTTTT
Statistics
Matches: 217, Mismatches: 16, Indels: 18
0.86 0.06 0.07
Matches are distributed among these distances:
102 53 0.24
103 34 0.16
104 39 0.18
108 1 0.00
109 49 0.23
110 2 0.01
111 13 0.06
112 26 0.12
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (102 bp):
AAAAAAAAATTTTACTGTTCACTGGGTGCCGGCCATTGACAGACCAACACCCAAAAAATTTTTTT
AAATTTTTTTCGTATTTTTATATCTGACTCTAACACG
Found at i:45425053 original size:4 final size:4
Alignment explanation
Indices: 45425044--45425072 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
45425034 TTTATCACTG
45425044 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T
45425073 AATTTTGATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:45426429 original size:10 final size:10
Alignment explanation
Indices: 45426396--45426434 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
45426386 TCCTTCCTCC
45426396 TCCTTTTTTT
1 TCCTTTTTTT
* *
45426406 CCCTCTTCTTT
1 TCCT-TTTTTT
45426417 TCCTTTTTTT
1 TCCTTTTTTT
45426427 TCCTTTTT
1 TCCTTTTT
45426435 GGCAATTGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
10 16 0.67
11 8 0.33
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (10 bp):
TCCTTTTTTT
Found at i:45428981 original size:46 final size:45
Alignment explanation
Indices: 45428899--45428996 Score: 121
Period size: 46 Copynumber: 2.2 Consensus size: 45
45428889 ATAAAAAGAA
* *
45428899 ATAAATTT-T-AAAATATAAAGAATATGTATAAATATGTGTGTAT
1 ATAAATTTATGAAAATATAAAGAATATATATAAATATGTATGTAT
* *
45428942 ATATATTTATGAAAATA-AAAGAGGATATATATAAGTATGTATGTAT
1 ATAAATTTATGAAAATATAAAGA--ATATATATAAATATGTATGTAT
45428988 ATAAATTTA
1 ATAAATTTA
45428997 AAGTATGCAT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
43 7 0.15
44 6 0.13
45 6 0.13
46 27 0.59
ACGTcount: A:0.49, C:0.00, G:0.12, T:0.39
Consensus pattern (45 bp):
ATAAATTTATGAAAATATAAAGAATATATATAAATATGTATGTAT
Found at i:45430568 original size:41 final size:40
Alignment explanation
Indices: 45430522--45430887 Score: 173
Period size: 40 Copynumber: 8.7 Consensus size: 40
45430512 GTGGATTTAG
* ** *
45430522 TCTGCTCCACTGCAACTTCAGGGAGATAATACTTGATACGA
1 TCTGCTCCACTACTGCTT-AGGGAGATAAAACTTGATACGA
* *
45430563 TCTGCTCCACTACTGCTTAGAGAGATAAAACTTGATGCGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAAACTTGATACGA
* * ***
45430603 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAA-AACT-T-GATACGA
** * ** ** * *
45430646 TCCACTCCACTGCAACTTCAGGGAGATAGGA-TTGGTTTTTTTTTC-A
1 TCTGCTCCACTACTGCTT-AGGGAGATAAAACTT-G------ATACGA
* *
45430692 GTCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGA
1 -TCTGCTCCACTACTGCTTAGGGAGATAAAACTTGATACGA
* * ***
45430733 TCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAA
1 TCTGCTCCACTACTGCTTAGGGAGATAA-AACT-T-GATACGA
* ** ** *
45430776 TCCGCTCCACTACAACTTCAGGGAGATAGGA-TTGATTTCTTTTG-
1 TCTGCTCCACTACTGCTT-AGGGAGATAAAACTTGA-TAC----GA
* * **
45430820 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAAACTTGATACGA
45430860 TCTGCTCCACTACTGCTTAGGGAGATAA
1 TCTGCTCCACTACTGCTTAGGGAGATAA
45430888 GATCTGTGGT
Statistics
Matches: 250, Mismatches: 51, Indels: 49
0.71 0.15 0.14
Matches are distributed among these distances:
39 1 0.00
40 105 0.42
41 27 0.11
42 4 0.02
43 46 0.18
44 36 0.14
46 13 0.05
47 18 0.07
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.31
Consensus pattern (40 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAAACTTGATACGA
Found at i:45430729 original size:130 final size:130
Alignment explanation
Indices: 45430563--45430979 Score: 687
Period size: 130 Copynumber: 3.2 Consensus size: 130
45430553 CTTGATACGA
* *
45430563 TCTGCTCCACTACTGCTTAGAGAGATAAAACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
*
45430628 TAAGATCTGTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTGGTTTTTTTTTCAG
66 TAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTTTTTTTCAG
45430693 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
* * *
45430758 TAAGATCTGTGGTTTTAATCCGCTCCACTACAACTTCAGGGAGATAGGATT-GATTTCTTTT--G
66 TAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTTTTTTTCAG
* *
45430820 TCTGCTCCACTACTGCTTAGGGAGATAAGACTGGATGTGATCTGCTCCACTACTGCTTAGGGAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
* **
45430885 TAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTTAAAGAGATAGGATTGGTTTTTTTTTCAG
66 TAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTTTTTTTCAG
* * *
45430950 TTTGCTCCACTATTGATTAGGGAGATAAGA
1 TCTGCTCCACTACTGCTTAGGGAGATAAGA
45430980 TCTATGGTTC
Statistics
Matches: 267, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
127 111 0.42
128 8 0.03
129 8 0.03
130 140 0.52
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (130 bp):
TCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGCTCCACTACTGCTTAGGGAGA
TAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTTTTTTTCAG
Found at i:45431046 original size:44 final size:44
Alignment explanation
Indices: 45430988--45431247 Score: 245
Period size: 44 Copynumber: 5.9 Consensus size: 44
45430978 GATCTATGGT
* *
45430988 TCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTAC-A
1 TCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTACTA
* * * * *
45431032 TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTA
1 TCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTACTA
* * * * * * *
45431076 TCTTCAATCTATTTCACGCCAATACATGAAGACAAGATCTACTT
1 TCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTACTA
* * *
45431120 TCTTTGATCTACGTCGCCACCAGTATAGGAAGACAAGATCTAC-A
1 TCTTCGATCTACTTC-CCACCAATATAGGAAGACAAGATCTACTA
* * * * *
45431164 TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGACCTGCTA
1 TCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTACTA
*** * *
45431208 TCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCT
1 TCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCT
45431248 GCTTTAATGT
Statistics
Matches: 169, Mismatches: 44, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
43 43 0.25
44 104 0.62
45 22 0.13
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (44 bp):
TCTTCGATCTACTTCCCACCAATATAGGAAGACAAGATCTACTA
Found at i:45431229 original size:132 final size:132
Alignment explanation
Indices: 45430987--45431252 Score: 469
Period size: 132 Copynumber: 2.0 Consensus size: 132
45430977 AGATCTATGG
* *
45430987 TTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATCTACATCTTCGATCCACTTCCTACC
1 TTCTTCGATCTACGTCGCCACCAGTATAGGAAGACAAGATCTACATCTTCGATCCACTTCCTACC
*
45431052 AATATAGGAAGACAGGACCTGCTATCTTCAATCTATTTCACGCCAATACATGAAGACAAGATCTA
66 AATATAGGAAGACAGGACCTGCTATCTTCAATCTACTTCACGCCAATACATGAAGACAAGATCTA
45431117 CT
131 CT
*
45431119 TTCTTTGATCTACGTCGCCACCAGTATAGGAAGACAAGATCTACATCTTCGATCCACTTCCTACC
1 TTCTTCGATCTACGTCGCCACCAGTATAGGAAGACAAGATCTACATCTTCGATCCACTTCCTACC
* * *
45431184 AATATAGGAAGACAGGACCTGCTATCTTCGATCTACTTCATGCCAATACATGAAGACAAGATCTG
66 AATATAGGAAGACAGGACCTGCTATCTTCAATCTACTTCACGCCAATACATGAAGACAAGATCTA
45431249 CT
131 CT
45431251 TT
1 TT
45431253 AATGTCTTCA
Statistics
Matches: 127, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
132 127 1.00
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (132 bp):
TTCTTCGATCTACGTCGCCACCAGTATAGGAAGACAAGATCTACATCTTCGATCCACTTCCTACC
AATATAGGAAGACAGGACCTGCTATCTTCAATCTACTTCACGCCAATACATGAAGACAAGATCTA
CT
Found at i:45432163 original size:5 final size:5
Alignment explanation
Indices: 45432155--45432198 Score: 61
Period size: 5 Copynumber: 8.4 Consensus size: 5
45432145 TTTTTTGTTC
*
45432155 TTCTT TTCTT TTCTT TTCTT TTCTTTT TTCTT TTCAT TTCTT TT
1 TTCTT TTCTT TTCTT TTCTT TTC--TT TTCTT TTCTT TTCTT TT
45432199 TTTCGAGTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 30 0.86
7 5 0.14
ACGTcount: A:0.02, C:0.18, G:0.00, T:0.80
Consensus pattern (5 bp):
TTCTT
Found at i:45432183 original size:17 final size:17
Alignment explanation
Indices: 45432139--45432200 Score: 74
Period size: 17 Copynumber: 3.6 Consensus size: 17
45432129 CATCTCTCAT
*
45432139 TTTTCTTTTTT-TGTTC
1 TTTTCTTTTTTCTTTTC
45432155 TTCTT-TTCTTTTCTTTTC
1 TT-TTCTT-TTTTCTTTTC
45432173 TTTTCTTTTTTCTTTTC
1 TTTTCTTTTTTCTTTTC
*
45432190 ATTTCTTTTTT
1 TTTTCTTTTTT
45432201 TCGAGTGAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
16 4 0.10
17 28 0.70
18 8 0.20
ACGTcount: A:0.02, C:0.16, G:0.02, T:0.81
Consensus pattern (17 bp):
TTTTCTTTTTTCTTTTC
Found at i:45432183 original size:22 final size:23
Alignment explanation
Indices: 45432139--45432198 Score: 86
Period size: 22 Copynumber: 2.6 Consensus size: 23
45432129 CATCTCTCAT
*
45432139 TTTTCTTTTTTTGTTCTTCTTTTC
1 TTTTCTTTTCTT-TTCTTCTTTTC
45432163 TTTTCTTTTCTTTTCTT-TTTTC
1 TTTTCTTTTCTTTTCTTCTTTTC
*
45432185 TTTTCATTTCTTTT
1 TTTTCTTTTCTTTT
45432199 TTTCGAGTGA
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
22 18 0.53
23 5 0.15
24 11 0.32
ACGTcount: A:0.02, C:0.17, G:0.02, T:0.80
Consensus pattern (23 bp):
TTTTCTTTTCTTTTCTTCTTTTC
Found at i:45432681 original size:11 final size:11
Alignment explanation
Indices: 45432667--45432691 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
45432657 CTTTTTTTAC
45432667 TTTTTGTTTTT
1 TTTTTGTTTTT
45432678 TTTTTGTTTTT
1 TTTTTGTTTTT
45432689 TTT
1 TTT
45432692 CCACTGAGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (11 bp):
TTTTTGTTTTT
Found at i:45435338 original size:18 final size:18
Alignment explanation
Indices: 45435303--45435338 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
45435293 GATCTTCATC
* *
45435303 TTTTTGTTGTTTTTTTCT
1 TTTTTGTTGTATTCTTCT
45435321 TTTTTGTTGTATTCTTCT
1 TTTTTGTTGTATTCTTCT
45435339 GTTGCTTTGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.03, C:0.08, G:0.11, T:0.78
Consensus pattern (18 bp):
TTTTTGTTGTATTCTTCT
Found at i:45436867 original size:43 final size:43
Alignment explanation
Indices: 45436786--45436867 Score: 96
Period size: 43 Copynumber: 1.9 Consensus size: 43
45436776 CATTATTTTT
* * *
45436786 GGAGAGAGAAATGAAAACACGTCTTATAGGACGAGTTTTTAGG
1 GGAGAGAGAAATGAAAACACATATTAAAGGACGAGTTTTTAGG
*
45436829 GGAGAGAGAAAT-ATAAACACATATTACAAGG-CGCGTTTT
1 GGAGAGAGAAATGA-AAACACATATTA-AAGGACGAGTTTT
45436868 CACTTTGTTG
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
42 1 0.03
43 29 0.88
44 3 0.09
ACGTcount: A:0.39, C:0.11, G:0.27, T:0.23
Consensus pattern (43 bp):
GGAGAGAGAAATGAAAACACATATTAAAGGACGAGTTTTTAGG
Found at i:45441849 original size:26 final size:27
Alignment explanation
Indices: 45441810--45441873 Score: 78
Period size: 26 Copynumber: 2.4 Consensus size: 27
45441800 ATCAAGTTAA
*
45441810 ATATTATT-ATATTTATAATAATTTCTTT
1 ATATTATTAAT-TTTATAA-AATATCTTT
*
45441838 ATATT-TTAATTTTTTAAAATATCTTT
1 ATATTATTAATTTTATAAAATATCTTT
45441864 ATATTATTAA
1 ATATTATTAA
45441874 AATGCATATT
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
26 13 0.41
27 12 0.38
28 7 0.22
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (27 bp):
ATATTATTAATTTTATAAAATATCTTT
Found at i:45442929 original size:18 final size:19
Alignment explanation
Indices: 45442877--45442943 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 19
45442867 ATAAAACATG
45442877 AAAATATAAA--TATCATAA
1 AAAATATAAATGTAT-ATAA
45442895 AAAATATAAATGTATATAA
1 AAAATATAAATGTATATAA
45442914 AAAAT-TAAGATGATATGATAA
1 AAAATATAA-ATG-TAT-ATAA
45442935 TAAAATATA
1 -AAAATATA
45442944 TACGTACTAC
Statistics
Matches: 42, Mismatches: 0, Indels: 9
0.82 0.00 0.18
Matches are distributed among these distances:
18 13 0.31
19 12 0.29
20 6 0.14
21 4 0.10
22 5 0.12
23 2 0.05
ACGTcount: A:0.63, C:0.01, G:0.06, T:0.30
Consensus pattern (19 bp):
AAAATATAAATGTATATAA
Found at i:45443554 original size:15 final size:16
Alignment explanation
Indices: 45443534--45443569 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
45443524 TTGTTTTAAG
45443534 AAACAAAAGAAAA-AA
1 AAACAAAAGAAAATAA
*
45443549 AAACAAAATAAAATAA
1 AAACAAAAGAAAATAA
45443565 AAACA
1 AAACA
45443570 GTAAAAAGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 12 0.63
16 7 0.37
ACGTcount: A:0.83, C:0.08, G:0.03, T:0.06
Consensus pattern (16 bp):
AAACAAAAGAAAATAA
Found at i:45450292 original size:16 final size:15
Alignment explanation
Indices: 45450264--45450302 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 15
45450254 TTTTTTAAAA
45450264 ATTATAAAAAAATAAT
1 ATTA-AAAAAAATAAT
45450280 ATTAAAAATAAATAAT
1 ATTAAAAA-AAATAAT
45450296 A-TAAAAA
1 ATTAAAAA
45450303 CTATGCAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (15 bp):
ATTAAAAAAAATAAT
Found at i:45450819 original size:21 final size:23
Alignment explanation
Indices: 45450789--45450831 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
45450779 ATATAAGGTG
45450789 AAAAACTAAA-TAAAA-CAAAAA
1 AAAAACTAAATTAAAAGCAAAAA
*
45450810 AAAAATTAAATTAAAAGCAAAA
1 AAAAACTAAATTAAAAGCAAAA
45450832 TACTAAACAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 9 0.47
22 5 0.26
23 5 0.26
ACGTcount: A:0.77, C:0.07, G:0.02, T:0.14
Consensus pattern (23 bp):
AAAAACTAAATTAAAAGCAAAAA
Found at i:45466888 original size:32 final size:32
Alignment explanation
Indices: 45466842--45466904 Score: 108
Period size: 32 Copynumber: 2.0 Consensus size: 32
45466832 AGAAACTAGA
* *
45466842 GAATAAGTTGTATTATTATGAGAGTATTTTTT
1 GAATAAGTTATATTATTATGAAAGTATTTTTT
45466874 GAATAAGTTATATTATTATGAAAGTATTTTT
1 GAATAAGTTATATTATTATGAAAGTATTTTT
45466905 ATTTTTTATA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 29 1.00
ACGTcount: A:0.35, C:0.00, G:0.16, T:0.49
Consensus pattern (32 bp):
GAATAAGTTATATTATTATGAAAGTATTTTTT
Found at i:45467571 original size:29 final size:30
Alignment explanation
Indices: 45467529--45467590 Score: 108
Period size: 29 Copynumber: 2.1 Consensus size: 30
45467519 GTTGTTTAAA
*
45467529 AGTGTGTTTTTTAGTC-AACAAAAAAATTT
1 AGTGTGTTTTTTAGTCAAACAAAAAAAATT
45467558 AGTGTGTTTTTTAGTCAAACAAAAAAAATT
1 AGTGTGTTTTTTAGTCAAACAAAAAAAATT
45467588 AGT
1 AGT
45467591 TAAACTAGAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 16 0.52
30 15 0.48
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.39
Consensus pattern (30 bp):
AGTGTGTTTTTTAGTCAAACAAAAAAAATT
Done.