Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 156 of 173
Found at i:46944018 original size:174 final size:173
Alignment explanation
Indices: 46943717--46944131 Score: 645
Period size: 174 Copynumber: 2.4 Consensus size: 173
46943707 TCATGTGTCT
46943717 ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTCAAGCC
1 ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATT-AAGCC
* * *
46943782 ATTAATTCTATCTCCCTAAGCCATAGTGGAGCGGATCGAAGACGGCGAATCTCATCTTCCCCAAG
65 ATTAATTCTATCTCCCTAAGCAATAGTGGAGCGGAACGAAGACGGCGAATCCCATCTTCCCCAAG
*
46943847 AGTAGGGAAAC-GAATTTAAGCCACTGGTTCTATCTCTCTAAGCA
130 AGTAGGGAAACAG-ATTTAAGCCACTGGTTCTATCTCCCTAAGCA
*
46943891 ATAGTAGAGCAGATCGAAGACAGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATCTAAGCC
1 ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGAT-TAAGCC
* * * *
46943956 ATTAATTCTATCTCCCTAATCAATAGTTGAGCGGAACGAAGACGGCGAATCCCATTTTCCCCAGG
65 ATTAATTCTATCTCCCTAAGCAATAGTGGAGCGGAACGAAGACGGCGAATCCCATCTTCCCCAAG
*
46944021 AGTAGGGAAACAGATTTAAGCCACTGGTTTTATCTCCCTAAGCA
130 AGTAGGGAAACAGATTTAAGCCACTGGTTCTATCTCCCTAAGCA
* * * *
46944065 ATAGTGGAGCAGATTC-AAGACGGCGAACCTTATCTTCCCCATGAATAGGGAAACAGATTTAAGC
1 ATAGTAGAGCAGA-TCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGA-TTAAGC
46944129 CAT
64 CAT
46944132 AAATACTACC
Statistics
Matches: 222, Mismatches: 15, Indels: 8
0.91 0.06 0.03
Matches are distributed among these distances:
174 217 0.98
175 5 0.02
ACGTcount: A:0.33, C:0.23, G:0.21, T:0.23
Consensus pattern (173 bp):
ATAGTAGAGCAGATCGAAGACGGCGAATCTTATCTTCCCCAAGAGTAGGGAAACAGATTAAGCCA
TTAATTCTATCTCCCTAAGCAATAGTGGAGCGGAACGAAGACGGCGAATCCCATCTTCCCCAAGA
GTAGGGAAACAGATTTAAGCCACTGGTTCTATCTCCCTAAGCA
Found at i:46944694 original size:13 final size:12
Alignment explanation
Indices: 46944672--46944709 Score: 51
Period size: 14 Copynumber: 3.1 Consensus size: 12
46944662 TACGGAGGGA
46944672 TTTT-ATTTTTC
1 TTTTCATTTTTC
46944683 TTTTCGATTTTTTC
1 TTTTC-A-TTTTTC
46944697 TTTTCATTTTTC
1 TTTTCATTTTTC
46944709 T
1 T
46944710 GTAAAAAGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
11 4 0.17
12 7 0.29
13 2 0.08
14 11 0.46
ACGTcount: A:0.08, C:0.13, G:0.03, T:0.76
Consensus pattern (12 bp):
TTTTCATTTTTC
Found at i:46944696 original size:14 final size:13
Alignment explanation
Indices: 46944677--46944707 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
46944667 AGGGATTTTA
46944677 TTTTTCTTTTCGAT
1 TTTTTCTTTTC-AT
46944691 TTTTTCTTTTCAT
1 TTTTTCTTTTCAT
46944704 TTTT
1 TTTT
46944708 CTGTAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 6 0.35
14 11 0.65
ACGTcount: A:0.06, C:0.13, G:0.03, T:0.77
Consensus pattern (13 bp):
TTTTTCTTTTCAT
Found at i:46945540 original size:18 final size:17
Alignment explanation
Indices: 46945496--46945541 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
46945486 CTGTTATTAA
*
46945496 TTTTTGT-TAT-TTTAT
1 TTTTTGTATATATGTAT
46945511 TTTTTGTATATATGTAT
1 TTTTTGTATATATGTAT
*
46945528 TTGTTTTTATATAT
1 TT-TTTGTATATAT
46945542 AATTAACTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 7 0.27
16 3 0.12
17 6 0.23
18 10 0.38
ACGTcount: A:0.20, C:0.00, G:0.09, T:0.72
Consensus pattern (17 bp):
TTTTTGTATATATGTAT
Found at i:46950505 original size:21 final size:21
Alignment explanation
Indices: 46950476--46950515 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
46950466 TTTAGTAAAA
*
46950476 TTGTGATTTAGTCCTAATTAT
1 TTGTAATTTAGTCCTAATTAT
*
46950497 TTGTAATTTGGTCCTAATT
1 TTGTAATTTAGTCCTAATT
46950516 TATCCATTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.23, C:0.10, G:0.15, T:0.53
Consensus pattern (21 bp):
TTGTAATTTAGTCCTAATTAT
Found at i:46956172 original size:12 final size:13
Alignment explanation
Indices: 46956141--46956173 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
46956131 TAATAGAAGT
46956141 GATAACAAAAATG
1 GATAACAAAAATG
46956154 GATAACAAAAATG
1 GATAACAAAAATG
46956167 GA-AACAA
1 GATAACAA
46956174 TATAACTAGA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 5 0.25
13 15 0.75
ACGTcount: A:0.64, C:0.09, G:0.15, T:0.12
Consensus pattern (13 bp):
GATAACAAAAATG
Found at i:46957367 original size:20 final size:20
Alignment explanation
Indices: 46957339--46957407 Score: 86
Period size: 20 Copynumber: 3.4 Consensus size: 20
46957329 GTATCCCTTT
46957339 ATAATTTTTTATGCTTCCTC
1 ATAATTTTTTATGCTTCCTC
* *
46957359 ATAACTTTTTATACTTCCTC
1 ATAATTTTTTATGCTTCCTC
*
46957379 ATATTTTTTTGATG-TTCCCTC
1 ATAATTTTTT-ATGCTT-CCTC
46957400 ATAATTTT
1 ATAATTTT
46957408 AAAAGGAGGA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
20 28 0.68
21 13 0.32
ACGTcount: A:0.22, C:0.19, G:0.04, T:0.55
Consensus pattern (20 bp):
ATAATTTTTTATGCTTCCTC
Found at i:46957920 original size:19 final size:20
Alignment explanation
Indices: 46957898--46957941 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
46957888 TATAAAAAAT
46957898 ATTTTT-ATATCAAAAATTA
1 ATTTTTCATATCAAAAATTA
* *
46957917 ATTTTTCATGTCAAAATTTA
1 ATTTTTCATATCAAAAATTA
46957937 ATTTT
1 ATTTT
46957942 GAAAGCATAC
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 6 0.27
20 16 0.73
ACGTcount: A:0.39, C:0.07, G:0.02, T:0.52
Consensus pattern (20 bp):
ATTTTTCATATCAAAAATTA
Found at i:46957959 original size:20 final size:19
Alignment explanation
Indices: 46957936--46957985 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 19
46957926 GTCAAAATTT
46957936 AATTTTGAAAGCATACCTAA
1 AATTTTGAAAGCATA-CTAA
*
46957956 AATTTT-AATGGCATACTAA
1 AATTTTGAA-AGCATACTAA
46957975 AATTTATGAAA
1 AATTT-TGAAA
46957986 AAAATATTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
19 11 0.44
20 12 0.48
21 2 0.08
ACGTcount: A:0.46, C:0.10, G:0.10, T:0.34
Consensus pattern (19 bp):
AATTTTGAAAGCATACTAA
Found at i:46961981 original size:19 final size:19
Alignment explanation
Indices: 46961937--46961983 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
46961927 TTTGATGACA
46961937 CAATAAAA-ATTTAAGTAT
1 CAATAAAATATTTAAGTAT
* *
46961955 GAAAAAAATATTTAAGTAT
1 CAATAAAATATTTAAGTAT
*
46961974 CAGTAAAATA
1 CAATAAAATA
46961984 CTAACAAATT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
18 6 0.26
19 17 0.74
ACGTcount: A:0.57, C:0.04, G:0.09, T:0.30
Consensus pattern (19 bp):
CAATAAAATATTTAAGTAT
Found at i:46963700 original size:42 final size:42
Alignment explanation
Indices: 46963617--46963700 Score: 107
Period size: 42 Copynumber: 2.0 Consensus size: 42
46963607 TTATATATGC
* * *
46963617 CACACAGCCTGGGCACACCCCTGTGTCCTTGCCCGTATGGTT
1 CACACAGCCTGAGCACACCCCTATGTCCTTGCCCATATGGTT
* *
46963659 CACACAGCCTGAGCACATGCCC-ATGTCCTTGCCCATGTGGTT
1 CACACAGCCTGAGCACA-CCCCTATGTCCTTGCCCATATGGTT
46963701 TTAAAATATA
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
42 33 0.92
43 3 0.08
ACGTcount: A:0.17, C:0.37, G:0.23, T:0.24
Consensus pattern (42 bp):
CACACAGCCTGAGCACACCCCTATGTCCTTGCCCATATGGTT
Found at i:46968212 original size:15 final size:17
Alignment explanation
Indices: 46968185--46968219 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
46968175 TAATTAATAG
46968185 AAATAATAAAAC-AACA
1 AAATAATAAAACAAACA
46968201 AAATAA-AAAACAAACA
1 AAATAATAAAACAAACA
46968217 AAA
1 AAA
46968220 ACAATAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.80, C:0.11, G:0.00, T:0.09
Consensus pattern (17 bp):
AAATAATAAAACAAACA
Found at i:46969029 original size:5 final size:5
Alignment explanation
Indices: 46969019--46969043 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
46969009 AAGATTCGAC
46969019 TCTTT TCTTT TCTTT TCTTT TCTTT
1 TCTTT TCTTT TCTTT TCTTT TCTTT
46969044 GTTTTCTTCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (5 bp):
TCTTT
Found at i:46970785 original size:25 final size:25
Alignment explanation
Indices: 46970757--46970897 Score: 99
Period size: 25 Copynumber: 5.5 Consensus size: 25
46970747 ATATTACGTA
*
46970757 TATATATATTTTATACTATTTTATT
1 TATATATATTTTATACTATATTATT
* * *
46970782 TATATATCTTTAATATTATATTATT
1 TATATATATTTTATACTATATTATT
* * *
46970807 TATATATATTTTTTTCTACATGTTATCT
1 TATATATATTTTATACT--ATATTAT-T
* *
46970835 TATGTATATATCTTA-ACTATATTATG
1 TA--TATATATTTTATACTATATTATT
* *
46970861 TATATAT-TTTTAACACTATATTATG
1 TATATATATTTT-ATACTATATTATT
*
46970886 TACATAT-TTTTA
1 TATATATATTTTA
46970898 ATATTATCAC
Statistics
Matches: 92, Mismatches: 17, Indels: 15
0.74 0.14 0.12
Matches are distributed among these distances:
23 3 0.03
24 7 0.08
25 54 0.59
26 2 0.02
27 12 0.13
28 3 0.03
29 2 0.02
30 9 0.10
ACGTcount: A:0.33, C:0.07, G:0.03, T:0.57
Consensus pattern (25 bp):
TATATATATTTTATACTATATTATT
Found at i:46971073 original size:16 final size:15
Alignment explanation
Indices: 46971049--46971096 Score: 69
Period size: 16 Copynumber: 3.1 Consensus size: 15
46971039 TAATTATTAT
*
46971049 TATTCTAATATTTTGA
1 TATTTTAATATTTT-A
46971065 TATTTTAATATTTTA
1 TATTTTAATATTTTA
46971080 TATTTTATATATTTTA
1 TATTTTA-ATATTTTA
46971096 T
1 T
46971097 TATTCACATC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 8 0.27
16 22 0.73
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (15 bp):
TATTTTAATATTTTA
Found at i:46971084 original size:7 final size:8
Alignment explanation
Indices: 46971049--46971100 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
46971039 TAATTATTAT
*
46971049 TATTCTAA
1 TATTTTAA
*
46971057 TATTTTGA
1 TATTTTAA
46971065 TATTTTAA
1 TATTTTAA
46971073 TATTTT-A
1 TATTTTAA
46971080 TATTTTATA
1 TATTTTA-A
*
46971089 TATTTTAT
1 TATTTTAA
46971097 TATT
1 TATT
46971101 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:46979512 original size:14 final size:14
Alignment explanation
Indices: 46979493--46979521 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
46979483 TGCTGAGGTC
46979493 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
46979507 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
46979521 T
1 T
46979522 CGTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.66
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:46979629 original size:74 final size:73
Alignment explanation
Indices: 46979528--46980131 Score: 662
Period size: 74 Copynumber: 8.0 Consensus size: 73
46979518 TGTTCGTAAA
* *
46979528 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTCAATTT
46979593 CTGTTTTTC
65 CTGTTTTTC
* *
46979602 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGAACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTCAATTT
*
46979667 CTATTTTTC
65 CTGTTTTTC
* *
46979676 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
*
46979741 TGTTTGTC
66 TGTTTTTC
* *
46979749 AAAAATTAACTCATATT--GAGAGGTGAGTTGAGCCTC-GGCTCACATGCTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG---ACACGCTGAGGTATTTTCAAT
**
46979811 TTCTGTTTGTAAA
63 TTCTGTTT-T-TC
*
46979824 AGAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATT
1 A-AAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTA-TTTTCAATT
*
46979889 TCTATTTTTC
64 TCTGTTTTTC
* * * *
46979899 AAAAATCAACTCA-ATTGCGAGAGGTGAGTTGAGCCTCGGGGCACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
46979963 TGTTTTTTAATTTATTTTTC
66 TG------------TTTTTC
* * ** * *
46979983 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACATTGAGGTATTTTTAATTTA
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
** ***
46980048 T-CATCAA
66 TGTTTTTC
* *
46980055 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTC-GTTTCACACGTTGAGGTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAG---GACACGCTGAGGTATTTTCAAT
*
46980119 TTCTGCTTTTC
63 TTCTGTTTTTC
46980130 AA
1 AA
46980132 TTTCTACTTT
Statistics
Matches: 453, Mismatches: 50, Indels: 53
0.81 0.09 0.10
Matches are distributed among these distances:
70 2 0.00
71 19 0.04
72 48 0.11
73 96 0.21
74 156 0.34
75 6 0.01
76 28 0.06
77 14 0.03
78 19 0.04
79 2 0.00
84 19 0.04
85 44 0.10
ACGTcount: A:0.29, C:0.16, G:0.21, T:0.34
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTC
Found at i:46980082 original size:72 final size:73
Alignment explanation
Indices: 46979983--46980120 Score: 224
Period size: 72 Copynumber: 1.9 Consensus size: 73
46979973 TTTATTTTTC
*
46979983 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACA-TTGAGGTATTTTTAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACACTTGAGGTATTTTCAATTT
46980047 ATCATCAA
66 ATCATCAA
***
46980055 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGTTTCACACGTTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACAC-TTGAGGTATTTTCAATT
46980120 T
65 T
46980121 CTGCTTTTCA
Statistics
Matches: 60, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
72 43 0.72
74 17 0.28
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACACTTGAGGTATTTTCAATTT
ATCATCAA
Found at i:46980130 original size:14 final size:14
Alignment explanation
Indices: 46980111--46980145 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
46980101 CGTTGAGGTA
*
46980111 TTTTCAATTTCTGC
1 TTTTCAATTTCTAC
46980125 TTTTCAATTTCTAC
1 TTTTCAATTTCTAC
46980139 TTTTCAA
1 TTTTCAA
46980146 AAGAATCAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.03, T:0.57
Consensus pattern (14 bp):
TTTTCAATTTCTAC
Found at i:46980166 original size:91 final size:91
Alignment explanation
Indices: 46980051--46980222 Score: 290
Period size: 91 Copynumber: 1.9 Consensus size: 91
46980041 TAATTTATCA
** * *
46980051 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGTTTCACACGTTGAGGTATTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGCATTTTC
46980116 AATTTCTGCTTTTCAATTTCTACTTT
66 AATTTCTGCTTTTCAATTTCTACTTT
* *
46980142 TCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGCGTTTTC
1 TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGCATTTTC
46980207 AATTTCTGCTTTTCAA
66 AATTTCTGCTTTTCAA
46980223 AAGAATCAAC
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
91 75 1.00
ACGTcount: A:0.26, C:0.20, G:0.20, T:0.34
Consensus pattern (91 bp):
TCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGCATTTTC
AATTTCTGCTTTTCAATTTCTACTTT
Found at i:46980349 original size:75 final size:76
Alignment explanation
Indices: 46980123--46980728 Score: 485
Period size: 77 Copynumber: 7.8 Consensus size: 76
46980113 TTCAATTTCT
46980123 GCTTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
1 GCTTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
46980188 CACACGCTGAG
66 CACACGCTGAG
*
46980199 GCGTTTTCAATTTCTGCTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
1 GC-TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
46980264 TCACACGCTGAG
65 TCACACGCTGAG
* * *
46980276 GCATTTTCAATTTCTGCTTTTC-AAA-AATCAACTTATATTGCGAGAGGTGAGTTGAGCCTCGGC
1 GC-TTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
*
46980339 TCACATGCTGAG
65 TCACACGCTGAG
* ** ** * * * *
46980351 GTCTTTTCAATTTCTATTTTTCAATTTCTGTTCGTAAAAAAAATCA-ACT-C-ATATTGCGAGAG
1 G-CTTTTCAATTTCTACTTTTCAA-------AAG--AATCAACTCATATTGCGAGA--G-GTGAG
* * *
46980413 GTGAG--TTGAGCCTCAGGACACGCTGAG
53 TTGAGCCTCG-G-GTC---ACACGCTGAG
* * **
46980440 GTATTTTTAAATTTCTGTTTTTC-AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
1 G--CTTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
46980503 G--ACACGCTGAG
64 GTCACACGCTGAG
** *
46980514 G-TAATTTCAATTTCTGTTTTTC-AAA-AATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
1 GCT--TTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
* *
46980576 CTCACATGCTGAG
64 GTCACACGCTGAG
* ** * * *
46980589 GTCTTTTCAATTTCT-GTTCGTAAAAAAAAATCAACACATATTGCGAGAGGTGAGTTGAGCCTCA
1 G-CTTTTCAATTTCTACTT--TTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCG
46980653 GG--ACACGCTGAG
63 GGTCACACGCTGAG
* * ** *
46980665 GTATTTTTAAATTTCTGTTTTTC-AAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGG
1 G--CTTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG
46980728 G
64 G
46980729 GCACGCTGAG
Statistics
Matches: 436, Mismatches: 55, Indels: 80
0.76 0.10 0.14
Matches are distributed among these distances:
71 1 0.00
73 56 0.13
74 48 0.11
75 89 0.20
76 19 0.04
77 109 0.25
78 36 0.08
79 15 0.03
80 4 0.01
81 3 0.01
82 2 0.00
83 2 0.00
84 3 0.01
85 4 0.01
86 17 0.04
89 11 0.03
90 17 0.04
ACGTcount: A:0.27, C:0.18, G:0.22, T:0.33
Consensus pattern (76 bp):
GCTTTTCAATTTCTACTTTTCAAAAGAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGT
CACACGCTGAG
Found at i:46980568 original size:73 final size:73
Alignment explanation
Indices: 46980389--46980760 Score: 519
Period size: 74 Copynumber: 5.0 Consensus size: 73
46980379 TGTTCGTAAA
* *
46980389 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-TTTTCAATTT
46980454 CTGTTTTTC
65 CTGTTTTTC
*
46980463 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
46980528 TGTTTTTC
66 TGTTTTTC
* * * *
46980536 AAAAATTAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGCTCACATGCTGAGGTCTTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGG--GACACGCTGAGGTATTTTCAATT
***
46980601 TCTGTTCGTAAAA
64 TCTGTT--T-TTC
* * *
46980614 AAAAATCAACACATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTTAAATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTA-TTTTCAATTT
46980679 CTGTTTTTC
65 CTGTTTTTC
* * * *
46980688 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGGCACGCTGAGGTATTGTCAATTTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
46980753 TGTGTTTT
66 TGT-TTTT
46980761 AATTTATTTT
Statistics
Matches: 263, Mismatches: 28, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
73 67 0.25
74 107 0.41
75 26 0.10
76 11 0.04
77 15 0.06
78 37 0.14
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (73 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGCTGAGGTATTTTCAATTTC
TGTTTTTC
Found at i:46980886 original size:85 final size:85
Alignment explanation
Indices: 46980668--46980888 Score: 281
Period size: 83 Copynumber: 2.6 Consensus size: 85
46980658 CGCTGAGGTA
* **
46980668 TTTTTAAATTTCTGTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCATCGGGGCAC
1 TTTTT-AATTTCT-TTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACATCGAAGCAC
*
46980733 GCTGAGGTATTGTCAATTTTTG
64 GCTGAGGTATTGTCAATTTATG
* *
46980755 TGTTTTAATTT-ATTTTTCAAAAA--AACTCATATTGCGAGAGGTGAGTTGAACCTC-AAG-ACG
1 T-TTTTAATTTCTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACATCGAAGCACG
* * *
46980815 CTGAGGTGTTTTCCATTTATG
65 CTGAGGTATTGTCAATTTATG
46980836 TTTTTCAATTTCTTCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTTT-AATTTCTT-TTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
46980889 GTCTCGGGCC
Statistics
Matches: 118, Mismatches: 10, Indels: 14
0.83 0.07 0.10
Matches are distributed among these distances:
80 4 0.03
81 26 0.22
82 2 0.02
83 39 0.33
85 37 0.31
87 6 0.05
88 4 0.03
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (85 bp):
TTTTTAATTTCTTTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAACATCGAAGCACGC
TGAGGTATTGTCAATTTATG
Found at i:46980957 original size:14 final size:14
Alignment explanation
Indices: 46980912--46980974 Score: 74
Period size: 14 Copynumber: 4.5 Consensus size: 14
46980902 CGCTGAGGTC
*
46980912 TTTTCAAATTCTGT
1 TTTTCAATTTCTGT
*
46980926 TTTT-AATTTCTGC
1 TTTTCAATTTCTGT
46980939 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
* *
46980953 TTTTCCAATTTATAT
1 TTTT-CAATTTCTGT
46980968 TTTTCAA
1 TTTTCAA
46980975 AAATTAACTC
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
13 11 0.26
14 19 0.45
15 12 0.29
ACGTcount: A:0.21, C:0.14, G:0.05, T:0.60
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:46981061 original size:117 final size:115
Alignment explanation
Indices: 46980824--46981062 Score: 275
Period size: 117 Copynumber: 2.1 Consensus size: 115
46980814 GCTGAGGTGT
* * *
46980824 TTTCCATTTATGTTTTTCAATTTCTTCTTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
1 TTTCAATTTATGTTTTTCAATTTATTCTTTTCAAAAATCAACTCATATCGCGAGAGGTGAGTTGA
* * * * **
46980889 GTCTCGGGCCACACGCTGAGGTCTTTTCAAATTCTGTTTTTAATTTCTGC
66 GCCTCGGGCCACACGCTGAGGTATTTTCAAAATCTGTTTTTAAATTAAGC
* * *
46980939 TTTTCAATTTCTGTTTTTCCAATTTATAT-TTTTCAAAAATTAACTCATATCGCGAGATGTGAGT
1 -TTTCAATTTATGTTTTT-CAATTTAT-TCTTTTCAAAAATCAACTCATATCGCGAGAGGTGAGT
* * * *
46981003 TGAGCCTTGGGTTCACATGTTGAGGTATTTTCAAAATCTGTTTTTCAAATTAAG-
63 TGAGCCTCGGG-CCACACGCTGAGGTATTTTCAAAATCTGTTTTT-AAATTAAGC
46981057 TTTCAA
1 TTTCAA
46981063 AAAAACCAAC
Statistics
Matches: 103, Mismatches: 16, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
116 15 0.15
117 54 0.52
118 29 0.28
119 5 0.05
ACGTcount: A:0.25, C:0.16, G:0.15, T:0.44
Consensus pattern (115 bp):
TTTCAATTTATGTTTTTCAATTTATTCTTTTCAAAAATCAACTCATATCGCGAGAGGTGAGTTGA
GCCTCGGGCCACACGCTGAGGTATTTTCAAAATCTGTTTTTAAATTAAGC
Found at i:46981869 original size:30 final size:29
Alignment explanation
Indices: 46981835--46981967 Score: 167
Period size: 30 Copynumber: 4.4 Consensus size: 29
46981825 AATCTTAGCT
46981835 TTTTCCACCACCAACTCCACTAGCCACACC
1 TTTTCCACCACCAACTCCACTAGCCACA-C
46981865 TTTTCCACCACCAACTCCACTAGCCACACC
1 TTTTCCACCACCAACTCCACTAGCCACA-C
*
46981895 TTTTCCACCACCAAATCCACTAGCCACAC
1 TTTTCCACCACCAACTCCACTAGCCACAC
* ** * *
46981924 TTGCTCCATTACCTACTCCACTAACCACAC
1 TT-TTCCACCACCAACTCCACTAGCCACAC
*
46981954 TTACTCCACCACCA
1 TT-TTCCACCACCA
46981968 CTTGTACCTA
Statistics
Matches: 91, Mismatches: 11, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
29 3 0.03
30 88 0.97
ACGTcount: A:0.28, C:0.47, G:0.03, T:0.22
Consensus pattern (29 bp):
TTTTCCACCACCAACTCCACTAGCCACAC
Found at i:46981871 original size:18 final size:18
Alignment explanation
Indices: 46981850--46981902 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 18
46981840 CACCACCAAC
46981850 TCCACTAGCCACACCTTT
1 TCCACTAGCCACACCTTT
*
46981868 TCCACCA-CCA-A-C---
1 TCCACTAGCCACACCTTT
46981880 TCCACTAGCCACACCTTT
1 TCCACTAGCCACACCTTT
46981898 TCCAC
1 TCCAC
46981903 CACCAAATCC
Statistics
Matches: 27, Mismatches: 2, Indels: 12
0.66 0.05 0.29
Matches are distributed among these distances:
12 6 0.22
13 3 0.11
14 1 0.04
15 2 0.07
16 1 0.04
17 3 0.11
18 11 0.41
ACGTcount: A:0.25, C:0.49, G:0.04, T:0.23
Consensus pattern (18 bp):
TCCACTAGCCACACCTTT
Found at i:46982560 original size:25 final size:25
Alignment explanation
Indices: 46982532--46982673 Score: 83
Period size: 25 Copynumber: 5.6 Consensus size: 25
46982522 ATATTACGTA
* *
46982532 TATATATATTTTATACTATTTTATT
1 TATATATATTTAATACTATATTATT
* *
46982557 TATATATCTTTAATATTATATTATT
1 TATATATATTTAATACTATATTATT
* * ** *
46982582 TATATTTTTTTTTCTAC-ATGTTATCT
1 TATA-TATATTTAATACTATATTAT-T
*
46982608 TATGTATATATCTT-A-ACTATATTATG
1 TA--TATATAT-TTAATACTATATTATT
* * *
46982634 TATATATTTTTAACACTATATTATA
1 TATATATATTTAATACTATATTATT
* *
46982659 TACATATTTTTAATA
1 TATATATATTTAATA
46982674 TTATCACGTA
Statistics
Matches: 90, Mismatches: 19, Indels: 16
0.72 0.15 0.13
Matches are distributed among these distances:
23 2 0.02
24 7 0.08
25 54 0.60
26 14 0.16
27 9 0.10
28 4 0.04
ACGTcount: A:0.33, C:0.07, G:0.02, T:0.58
Consensus pattern (25 bp):
TATATATATTTAATACTATATTATT
Found at i:46982848 original size:16 final size:15
Alignment explanation
Indices: 46982789--46982871 Score: 73
Period size: 16 Copynumber: 5.5 Consensus size: 15
46982779 TTTTTATTTC
*
46982789 TATTTTATTTTTTAA
1 TATTTTATATTTTAA
* *
46982804 T-TTTCA-ATATTAA
1 TATTTTATATTTTAA
* *
46982817 T-TATTATTATTCTAA
1 TATTTTA-TATTTTAA
46982832 TATTTTGATATTTTAA
1 TATTTT-ATATTTTAA
46982848 TATTTTATATTTTATA
1 TATTTTATATTTTA-A
46982864 TATTTTAT
1 TATTTTAT
46982872 TATTCACATC
Statistics
Matches: 54, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
13 9 0.17
14 4 0.07
15 15 0.28
16 25 0.46
17 1 0.02
ACGTcount: A:0.31, C:0.02, G:0.01, T:0.65
Consensus pattern (15 bp):
TATTTTATATTTTAA
Found at i:46982861 original size:7 final size:8
Alignment explanation
Indices: 46982824--46982875 Score: 61
Period size: 8 Copynumber: 6.5 Consensus size: 8
46982814 TAATTATTAT
*
46982824 TATTCTAA
1 TATTTTAA
*
46982832 TATTTTGA
1 TATTTTAA
46982840 TATTTTAA
1 TATTTTAA
46982848 TATTTT-A
1 TATTTTAA
46982855 TATTTTATA
1 TATTTTA-A
*
46982864 TATTTTAT
1 TATTTTAA
46982872 TATT
1 TATT
46982876 CACATCATTG
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 23 0.61
9 8 0.21
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (8 bp):
TATTTTAA
Found at i:46985192 original size:20 final size:22
Alignment explanation
Indices: 46985167--46985209 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
46985157 CGAGACTTGA
46985167 GAACTTT-TT-TCTCGAGACAT
1 GAACTTTATTGTCTCGAGACAT
*
46985187 GAACTTTATTGTCTTGAGACAT
1 GAACTTTATTGTCTCGAGACAT
46985209 G
1 G
46985210 TAGACATCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 7 0.35
21 2 0.10
22 11 0.55
ACGTcount: A:0.26, C:0.16, G:0.19, T:0.40
Consensus pattern (22 bp):
GAACTTTATTGTCTCGAGACAT
Found at i:46986148 original size:23 final size:23
Alignment explanation
Indices: 46986122--46986168 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
46986112 ATCTAGATAG
*
46986122 AAAAACAACTAATTGATATATTT
1 AAAAACAACTAATCGATATATTT
46986145 AAAAACAACTAATCGATATATTT
1 AAAAACAACTAATCGATATATTT
46986168 A
1 A
46986169 GTAAGCCTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.32
Consensus pattern (23 bp):
AAAAACAACTAATCGATATATTT
Found at i:46993788 original size:19 final size:19
Alignment explanation
Indices: 46993764--46993801 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
46993754 AATTCTTCAG
46993764 CTATTCTAAATTCTAACAA
1 CTATTCTAAATTCTAACAA
46993783 CTATTCTAAATTCTAACAA
1 CTATTCTAAATTCTAACAA
46993802 GACAAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.21, G:0.00, T:0.37
Consensus pattern (19 bp):
CTATTCTAAATTCTAACAA
Found at i:46994821 original size:17 final size:18
Alignment explanation
Indices: 46994782--46994831 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
46994772 TTTTATTTTT
46994782 TAAAAAATT-TAAAACAA
1 TAAAAAATTCTAAAACAA
* *
46994799 TTAAAAATTCTAAAA-TA
1 TAAAAAATTCTAAAACAA
46994816 TAAAAAATTCATAAAA
1 TAAAAAATTC-TAAAA
46994832 ATATGGAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 18 0.64
18 10 0.36
ACGTcount: A:0.66, C:0.06, G:0.00, T:0.28
Consensus pattern (18 bp):
TAAAAAATTCTAAAACAA
Found at i:46994935 original size:19 final size:19
Alignment explanation
Indices: 46994883--46994926 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
46994873 TAGTTATGCG
46994883 AAAAA-TTCATAAAATTTT
1 AAAAAGTTCATAAAATTTT
*
46994901 AAAATGTTCATAAAATTTT
1 AAAAAGTTCATAAAATTTT
46994920 AAAAAGT
1 AAAAAGT
46994927 ATTAAAAATC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 4 0.17
19 19 0.83
ACGTcount: A:0.55, C:0.05, G:0.05, T:0.36
Consensus pattern (19 bp):
AAAAAGTTCATAAAATTTT
Found at i:46997393 original size:90 final size:91
Alignment explanation
Indices: 46997233--46997413 Score: 233
Period size: 90 Copynumber: 2.0 Consensus size: 91
46997223 GTAGGCTATG
* * *
46997233 CTGCCAGATGGTTCTGAATACACAACCTTTTTTGCATATAAAAATTATCAGGTAATATGTGGATA
1 CTGCCAGATGGTTCTGAATACACAACCATTTTTGCAGATAAAAATTATCAGATAATATGTGGATA
46997298 AACCACCAAATTTACATG-TTTATAGT
66 AACCACCAAATTTACA-GATTTATAGT
* * * *
46997324 CTGCCAGATGGTTGTGAATACACAA-CATTTTTGTAGATAAAAGTT-GCTAGATAATATGTGGAT
1 CTGCCAGATGGTTCTGAATACACAACCATTTTTGCAGATAAAAATTATC-AGATAATATGTGGAT
* * *
46997387 GAACCACCAGATTTGCAGATTTATAGT
65 AAACCACCAAATTTACAGATTTATAGT
46997414 TTGCGAGAAC
Statistics
Matches: 78, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
89 2 0.03
90 52 0.67
91 24 0.31
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (91 bp):
CTGCCAGATGGTTCTGAATACACAACCATTTTTGCAGATAAAAATTATCAGATAATATGTGGATA
AACCACCAAATTTACAGATTTATAGT
Found at i:46999215 original size:26 final size:26
Alignment explanation
Indices: 46999186--46999242 Score: 64
Period size: 26 Copynumber: 2.2 Consensus size: 26
46999176 CAATTAAATT
*
46999186 AATT-TCTAAAATTTAAAAATTCAAAA
1 AATTATCTAAAAATT-AAAATTCAAAA
* *
46999212 AATTATTTAAAAATTAAATTTC-AAA
1 AATTATCTAAAAATTAAAATTCAAAA
46999237 AATTAT
1 AATTAT
46999243 AAAAAAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 9 0.33
26 10 0.37
27 8 0.30
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (26 bp):
AATTATCTAAAAATTAAAATTCAAAA
Found at i:47000022 original size:4 final size:4
Alignment explanation
Indices: 47000013--47000054 Score: 84
Period size: 4 Copynumber: 10.5 Consensus size: 4
47000003 TTGGTACACA
47000013 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TT
47000055 CTGTAGCATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 38 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:47010893 original size:27 final size:25
Alignment explanation
Indices: 47010846--47010904 Score: 64
Period size: 26 Copynumber: 2.3 Consensus size: 25
47010836 TATAAATTTT
*** *
47010846 TTTTTTTTGAAAAAGTGTTAACTAAA
1 TTTTTTTTGAAAAAAAATTAA-GAAA
47010872 TTTTTTTTGAAAATAAAATTAAGAAA
1 TTTTTTTTGAAAA-AAAATTAAGAAA
47010898 TTTTTTT
1 TTTTTTT
47010905 CATAAAATTG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 23 0.82
27 5 0.18
ACGTcount: A:0.39, C:0.02, G:0.08, T:0.51
Consensus pattern (25 bp):
TTTTTTTTGAAAAAAAATTAAGAAA
Found at i:47011200 original size:27 final size:28
Alignment explanation
Indices: 47011153--47011232 Score: 83
Period size: 27 Copynumber: 2.8 Consensus size: 28
47011143 ACAATTAATT
*
47011153 AATT-TTTAAAAAATTCAAAAATTTATAAA
1 AATTATTT-AAAAATT-AAAAAATTATAAA
*
47011182 AATTATTTAAAAATT-AAAAATTATTAA
1 AATTATTTAAAAATTAAAAAATTATAAA
*
47011209 AATAATTTAAAAAATATAAAAAAT
1 AATTATTT-AAAAAT-TAAAAAAT
47011233 ATTTTTAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
27 17 0.39
28 6 0.14
29 12 0.27
30 9 0.20
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.36
Consensus pattern (28 bp):
AATTATTTAAAAATTAAAAAATTATAAA
Found at i:47011220 original size:20 final size:20
Alignment explanation
Indices: 47011178--47011257 Score: 74
Period size: 21 Copynumber: 4.0 Consensus size: 20
47011168 CAAAAATTTA
*
47011178 TAAAAATTATTTAAA-AA-T
1 TAAAAATTATTAAAATAATT
47011196 TAAAAATTATTAAAATAATT
1 TAAAAATTATTAAAATAATT
* * *
47011216 TAAAAAATATAAAAAATATTT
1 TAAAAATTAT-TAAAATAATT
* *
47011237 TTAAAATTTTTAAAATTAATT
1 TAAAAATTATTAAAA-TAATT
47011258 AATTGCTAAC
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
18 14 0.29
19 2 0.04
20 14 0.29
21 19 0.39
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
TAAAAATTATTAAAATAATT
Found at i:47012748 original size:11 final size:11
Alignment explanation
Indices: 47012732--47012756 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
47012722 GTTAACAAAT
47012732 TAACTAATAGC
1 TAACTAATAGC
47012743 TAACTAATAGC
1 TAACTAATAGC
47012754 TAA
1 TAA
47012757 TAGATTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.48, C:0.16, G:0.08, T:0.28
Consensus pattern (11 bp):
TAACTAATAGC
Found at i:47015258 original size:215 final size:215
Alignment explanation
Indices: 47014887--47015318 Score: 738
Period size: 215 Copynumber: 2.0 Consensus size: 215
47014877 CATGGAGTTG
*
47014887 ATCGAAACTATAGTTTATGGGTGTTGTAGGGTCTAAGATTGGGAAAGCACAAGTAGCCAAAAACT
1 ATCGAAACTATAGCTTATGGGTGTTGTAGGGTCTAAGATTGGGAAAGCACAAGTAGCCAAAAACT
* * * *
47014952 CGAAGATATGAATAGCTTGGTTGAACCTAAAAGAGCTTTTCCTACGGTGAGATGTTGCCTAAGGG
66 CGAAAAGATGAATAGCTTGGTTGAACCTAAAAGAGCTTTTCATACGGTGAGATGTTGCCTAAAGG
* * *
47015017 AAAATAAGGCAAACTGTTTATCAAGTATACTGCACTACTGAAGGTATCATTCCAGTAGGTTAAGG
131 AAAAGAAGGCAAACTGTTTATCAAGTATACTGCACTACTAAAGGCATCATTCCAGTAGGTTAAGG
47015082 GCATAGATGCATGAGCCAGT
196 GCATAGATGCATGAGCCAGT
*
47015102 ATCGAAACTGTAGCTTATGGGTGTTGTAGGGTCTAAGATTGGGAAAGCACAAGTAGCCAAAAACT
1 ATCGAAACTATAGCTTATGGGTGTTGTAGGGTCTAAGATTGGGAAAGCACAAGTAGCCAAAAACT
* * *
47015167 CGAAAAGATGAATAGCTTGGTTGAAGCTGAAAGAGTTTTTCATACGGTGAGATGTTGCCTAAAGG
66 CGAAAAGATGAATAGCTTGGTTGAACCTAAAAGAGCTTTTCATACGGTGAGATGTTGCCTAAAGG
* *
47015232 AAAAGAAGGTAACCTGTTTATCAAGTATACTGCACTACTAAAGGCATCATTCCAGTAGGTTAAGG
131 AAAAGAAGGCAAACTGTTTATCAAGTATACTGCACTACTAAAGGCATCATTCCAGTAGGTTAAGG
47015297 GCATAGATGCATGAGCCAGT
196 GCATAGATGCATGAGCCAGT
47015317 AT
1 AT
47015319 GGAAGGACCA
Statistics
Matches: 203, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
215 203 1.00
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (215 bp):
ATCGAAACTATAGCTTATGGGTGTTGTAGGGTCTAAGATTGGGAAAGCACAAGTAGCCAAAAACT
CGAAAAGATGAATAGCTTGGTTGAACCTAAAAGAGCTTTTCATACGGTGAGATGTTGCCTAAAGG
AAAAGAAGGCAAACTGTTTATCAAGTATACTGCACTACTAAAGGCATCATTCCAGTAGGTTAAGG
GCATAGATGCATGAGCCAGT
Found at i:47017383 original size:42 final size:42
Alignment explanation
Indices: 47017285--47017443 Score: 167
Period size: 43 Copynumber: 3.7 Consensus size: 42
47017275 AATGTGATAT
*
47017285 CGTGTAAGACCACGTCTGGGACGTTGGCATCG-ATTTGAGATTTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTT--GA-TTA
* * * *
47017329 CGTGTAATACCATGTCTGGGACATTGGCGTCGTATATGATTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTA
* * * *
47017371 CGTGTAAGACCATGTCTGGGATAGTGACATCGTTATTTGATTA
1 CGTGTAAGACCACGTCTGGGACATTGGCATCG-TATTTGATTA
* **
47017414 CATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGTGTAAGACCACGTCTGGGACATTGGCAT
47017444 TGTACGAGCC
Statistics
Matches: 97, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
42 30 0.31
43 36 0.37
44 28 0.29
45 3 0.03
ACGTcount: A:0.24, C:0.17, G:0.28, T:0.31
Consensus pattern (42 bp):
CGTGTAAGACCACGTCTGGGACATTGGCATCGTATTTGATTA
Found at i:47017421 original size:43 final size:42
Alignment explanation
Indices: 47017326--47017435 Score: 139
Period size: 42 Copynumber: 2.6 Consensus size: 42
47017316 GATTTGAGAT
* * * * *
47017326 TTACGTGTAATACCATGTCTGGGACATTGGCGTCGTATATGA
1 TTACGTGTAAGACCATGTCTGGGATAGTGACATCGTATATGA
*
47017368 TTACGTGTAAGACCATGTCTGGGATAGTGACATCGTTATTTGA
1 TTACGTGTAAGACCATGTCTGGGATAGTGACATCG-TATATGA
* *
47017411 TTACATGTAAGACCACGTCTGGGAT
1 TTACGTGTAAGACCATGTCTGGGAT
47017436 GTTGGCATTG
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
42 30 0.51
43 29 0.49
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (42 bp):
TTACGTGTAAGACCATGTCTGGGATAGTGACATCGTATATGA
Found at i:47020430 original size:23 final size:22
Alignment explanation
Indices: 47020387--47020444 Score: 64
Period size: 22 Copynumber: 2.6 Consensus size: 22
47020377 AAAGGGTATC
* *
47020387 TACAAATTAAATC-TCTAAGAT
1 TACAAATCATATCTTCTAAGAT
47020408 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
* *
47020431 TGCATATCATATCT
1 TACAAATCATATCT
47020445 AGGATTGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 3 0.10
22 18 0.58
23 10 0.32
ACGTcount: A:0.41, C:0.17, G:0.05, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:47021989 original size:73 final size:73
Alignment explanation
Indices: 47021908--47022073 Score: 167
Period size: 73 Copynumber: 2.3 Consensus size: 73
47021898 GGATGTATAA
* **
47021908 TAGGAAGCTCATAAGAGCCATAT-TCAGGAAGCTT-ATGCAAGCCA-ATAACGGGTAGCTCCGAA
1 TAGGAAGCTCATAAGAGCCATATATCAGGAAG-TTCAAGCAAGCCACAT--CGGAAAGCTCCGAA
47021970 GAGCCATTAAT
63 GAGCCATTAAT
*** * * * *
47021981 TAGGAAGCTCCGGATAGCCATATATCGGGAAGTTCAAGCGAGCCACATTGGAAAGCTCCGAAGAG
1 TAGGAAGCTCATAAGAGCCATATATCAGGAAGTTCAAGCAAGCCACATCGGAAAGCTCCGAAGAG
47022046 CCATTAAT
66 CCATTAAT
* *
47022054 CAAGAAGCTCATAAAGAGCC
1 TAGGAAGCTCAT-AAGAGCC
47022074 TTCAATCGGG
Statistics
Matches: 73, Mismatches: 16, Indels: 7
0.76 0.17 0.07
Matches are distributed among these distances:
73 51 0.70
74 20 0.27
75 2 0.03
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.19
Consensus pattern (73 bp):
TAGGAAGCTCATAAGAGCCATATATCAGGAAGTTCAAGCAAGCCACATCGGAAAGCTCCGAAGAG
CCATTAAT
Found at i:47028705 original size:21 final size:21
Alignment explanation
Indices: 47028663--47028705 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
47028653 TCTTAATTCT
* *
47028663 AAAAAATTTAAAGAATATATA
1 AAAAAATTCAAAAAATATATA
47028684 AAAAAATTCAAACAAATA-ATA
1 AAAAAATTCAAA-AAATATATA
47028705 A
1 A
47028706 TAAATTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 15 0.79
22 4 0.21
ACGTcount: A:0.70, C:0.05, G:0.02, T:0.23
Consensus pattern (21 bp):
AAAAAATTCAAAAAATATATA
Found at i:47029138 original size:17 final size:17
Alignment explanation
Indices: 47029099--47029137 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 17
47029089 ATATTTTTGT
*
47029099 ATTTTTATATATTTTTA
1 ATTTTTATATATTATTA
*
47029116 AATTTTATATATTATT-
1 ATTTTTATATATTATTA
47029132 ATTTTT
1 ATTTTT
47029138 TGTCAACCAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTATATATTATTA
Found at i:47033237 original size:18 final size:19
Alignment explanation
Indices: 47033207--47033243 Score: 51
Period size: 18 Copynumber: 2.0 Consensus size: 19
47033197 TCAATAAATA
47033207 TTTTATATAAT-AATTTAG
1 TTTTATATAATAAATTTAG
47033225 TTTTA-ATAGATAAATTTAG
1 TTTTATATA-ATAAATTTAG
47033244 AGTTAAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
17 3 0.18
18 7 0.41
19 7 0.41
ACGTcount: A:0.41, C:0.00, G:0.08, T:0.51
Consensus pattern (19 bp):
TTTTATATAATAAATTTAG
Found at i:47033934 original size:16 final size:16
Alignment explanation
Indices: 47033910--47033947 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
47033900 TTTGATTCGC
* *
47033910 TGTATTGGATTAGAGG
1 TGTAATGGAATAGAGG
47033926 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
47033942 TGTAAT
1 TGTAAT
47033948 AGCAAATCAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.32, C:0.00, G:0.34, T:0.34
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:47034021 original size:44 final size:45
Alignment explanation
Indices: 47033926--47034023 Score: 135
Period size: 44 Copynumber: 2.2 Consensus size: 45
47033916 GGATTAGAGG
* *
47033926 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATAGAATAGAGGCGTAATAGCAAATCAACTGTTTGGTTGAA
* ***
47033971 TGTAATAGAATAGAGGCGTAATAG-TAATCCTGTGTTTGGTTGAA
1 TGTAATAGAATAGAGGCGTAATAGCAAATCAACTGTTTGGTTGAA
47034015 TGTAATAGA
1 TGTAATAGA
47034024 GGTGTAATAG
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
44 25 0.53
45 22 0.47
ACGTcount: A:0.35, C:0.06, G:0.27, T:0.33
Consensus pattern (45 bp):
TGTAATAGAATAGAGGCGTAATAGCAAATCAACTGTTTGGTTGAA
Found at i:47034081 original size:18 final size:18
Alignment explanation
Indices: 47034058--47034093 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
47034048 CTAAAATGAC
47034058 TAGAATACCCTTAGCATA
1 TAGAATACCCTTAGCATA
47034076 TAGAATACCCTTAGCATA
1 TAGAATACCCTTAGCATA
47034094 AATTTGTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.22, G:0.11, T:0.28
Consensus pattern (18 bp):
TAGAATACCCTTAGCATA
Found at i:47034220 original size:18 final size:17
Alignment explanation
Indices: 47034199--47034233 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
47034189 TTATTATTAA
*
47034199 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
47034217 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
47034234 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:47034367 original size:15 final size:15
Alignment explanation
Indices: 47034343--47034384 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
47034333 TTTAAACATA
*
47034343 ATTATTATTAAATAT
1 ATTATAATTAAATAT
47034358 ATTATAATTAAAT-T
1 ATTATAATTAAATAT
*
47034372 A-TATAATTTAATA
1 ATTATAATTAAATA
47034385 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 10 0.42
14 2 0.08
15 12 0.50
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:47034375 original size:155 final size:157
Alignment explanation
Indices: 47034093--47034400 Score: 557
Period size: 155 Copynumber: 2.0 Consensus size: 157
47034083 CCCTTAGCAT
*
47034093 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
47034158 TAATAAATAATTTAATTATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
47034223 TTTAATAAAATTCTTAATAATTAGCGG
131 TTTAATAAAATTCTTAATAATTAGCGG
*
47034250 AAATTTGTTTTGGTAAATTA-T-TTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
*
47034313 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAATTATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
47034378 TTTAATAAAATTCTTAATAATTA
131 TTTAATAAAATTCTTAATAATTA
47034401 ATATTCTTAC
Statistics
Matches: 146, Mismatches: 5, Indels: 2
0.95 0.03 0.01
Matches are distributed among these distances:
155 126 0.86
156 1 0.01
157 19 0.13
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTAGCGG
Found at i:47034471 original size:120 final size:120
Alignment explanation
Indices: 47034337--47034628 Score: 448
Period size: 120 Copynumber: 2.4 Consensus size: 120
47034327 ATCATATTTA
47034337 AACATAATTATTATTAAATATATTATAATTAAATTATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAA-TATATAATTTAATAAAATTCTTAATAATTAA
* *
47034402 TATTCTTACATGAATTTACTCAAATCATAATATATGATACTGTAAAATATAA-ATT-
65 TATTCTTACATGAATTTACTCAAATCATAATATATGATACTATAAAAGA-AATATTG
*
47034457 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAT
1 AACATAATTATTATTAAATATATTATAATT-AAATATATAATTTAATAAAATTCTTAATAATTAA
* * *
47034522 TATTCTTATATGAATTTATTCAAATCATAATATATGATACTATAAAAGAAATTTTG
65 TATTCTTACATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAATATTG
* *
47034578 AA-ATAATTAATATTAAATATATT-TAAATTAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTAT-AATTAAATATATAATTTAATAAAATT
47034629 TAAAATAATT
Statistics
Matches: 160, Mismatches: 8, Indels: 9
0.90 0.05 0.05
Matches are distributed among these distances:
119 24 0.15
120 131 0.82
121 5 0.03
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (120 bp):
AACATAATTATTATTAAATATATTATAATTAAATATATAATTTAATAAAATTCTTAATAATTAAT
ATTCTTACATGAATTTACTCAAATCATAATATATGATACTATAAAAGAAATATTG
Found at i:47034502 original size:14 final size:15
Alignment explanation
Indices: 47034453--47034504 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
47034443 GTAAAATATA
47034453 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
47034468 TATTAAATATATTAT
1 AATTAAATATATTAT
47034483 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
47034496 AATTTAATA
1 AATTAAATA
47034505 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:47034609 original size:15 final size:16
Alignment explanation
Indices: 47034584--47034614 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
47034574 TTTGAAATAA
47034584 TTAATATTAAATATAT
1 TTAATATTAAATATAT
47034600 TTAA-ATTAAATATAT
1 TTAATATTAAATATAT
47034615 GATTTAATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TTAATATTAAATATAT
Found at i:47034720 original size:91 final size:91
Alignment explanation
Indices: 47034644--47034851 Score: 292
Period size: 91 Copynumber: 2.3 Consensus size: 91
47034634 TAATTATAAC
* * * *
47034644 TAATAAATTATATTTTATGAATTTGTATAATTTAAAATAATAAATATTACATATAATTTAATAAT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATAAATATTAAATATAATTTAATAAT
*
47034709 AATATATAATTTCATAAAACTCTTAA
66 AATATATAATTTCATAAAAATCTTAA
* * *
47034735 TAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAATATTAAATATAATTTAATAAT
1 TAATAAATTATATTATATGAATTTATACAATTTAAAATAATAAATATTAAATATAATTTAATAAT
* *
47034800 GATATATAATTTCATAAAATTCTTAA
66 AATATATAATTTCATAAAAATCTTAA
*
47034826 TAATAAAATGT-TCTTATATGAATTTA
1 TAAT-AAAT-TATATTATATGAATTTA
47034852 CTAAAATCAA
Statistics
Matches: 106, Mismatches: 9, Indels: 3
0.90 0.08 0.03
Matches are distributed among these distances:
91 86 0.81
92 19 0.18
93 1 0.01
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (91 bp):
TAATAAATTATATTATATGAATTTATACAATTTAAAATAATAAATATTAAATATAATTTAATAAT
AATATATAATTTCATAAAAATCTTAA
Found at i:47034727 original size:47 final size:46
Alignment explanation
Indices: 47034676--47034819 Score: 120
Period size: 47 Copynumber: 3.1 Consensus size: 46
47034666 TTGTATAATT
*
47034676 TAAAATAATAAATATTACATATAATTTAATAATAATATATAATTTCA
1 TAAAATAATTAATATTA-ATATAATTTAATAATAATATATAATTTCA
* * ** * *
47034723 TAAAACT-CTTAATAATAA-AT--TTTCTTATATGAATTTATACAATT--
1 TAAAA-TAATTAATATTAATATAATTTAATA-AT-AATATATA-ATTTCA
*
47034767 TAAAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCA
1 TAAAATAATTAATATT-AATATAATTTAATAATAATATATAATTTCA
47034814 TAAAAT
1 TAAAAT
47034820 TCTTAATAAT
Statistics
Matches: 72, Mismatches: 14, Indels: 22
0.67 0.13 0.20
Matches are distributed among these distances:
43 6 0.08
44 14 0.19
45 14 0.19
46 12 0.17
47 20 0.28
48 6 0.08
ACGTcount: A:0.51, C:0.05, G:0.01, T:0.42
Consensus pattern (46 bp):
TAAAATAATTAATATTAATATAATTTAATAATAATATATAATTTCA
Found at i:47034727 original size:101 final size:96
Alignment explanation
Indices: 47034578--47034820 Score: 266
Period size: 91 Copynumber: 2.5 Consensus size: 96
47034568 AGAAATTTTG
* * * *
47034578 AAATAATTAATATTAAATAT-ATTTAA-ATTAAATATATGATTTAATAAAATTTAAAATAATTAT
1 AAATAATTAATATTAAATATAATTTAATAAT-AATATATAATTTCATAAAA-TTAAAAT--CT-T
* * *
47034641 AACTAATAAATTATATTTTATGAATTTGTATAATTTA
61 AA-TAATAAATTATATTATATGAATTTATACAATTTA
* * *
47034678 AAATAATAAATATTACATATAATTTAATAATAATATATAATTTCAT---A--AAACTCTTAATAA
1 AAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTAAAATCTTAATAA
* *
47034738 TAAATTTTCTTATATGAATTTATACAATTTA
66 TAAATTATATTATATGAATTTATACAATTTA
*
47034769 AAATAATTAATATTAAATATAATTTAATAATGATATATAATTTCATAAAATT
1 AAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATT
47034821 CTTAATAATA
Statistics
Matches: 121, Mismatches: 15, Indels: 18
0.79 0.10 0.12
Matches are distributed among these distances:
91 72 0.60
92 3 0.02
93 1 0.01
94 1 0.01
95 4 0.03
98 1 0.01
100 18 0.15
101 19 0.16
102 2 0.02
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (96 bp):
AAATAATTAATATTAAATATAATTTAATAATAATATATAATTTCATAAAATTAAAATCTTAATAA
TAAATTATATTATATGAATTTATACAATTTA
Found at i:47034811 original size:44 final size:43
Alignment explanation
Indices: 47034625--47034811 Score: 121
Period size: 44 Copynumber: 4.1 Consensus size: 43
47034615 GATTTAATAA
* * * *
47034625 AATTTAAAATAATTATAACTAATAAAT-TATATTTTATGAATTTGTAT
1 AATTTAAAATAA-T-TAA-TATTAAATATA-ATTTAAT-AATATATAT
* *
47034672 AATTTAAAATAATAAATATTACATATAATTTAATAATAATATAT
1 AATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATATAT
* * * * *
47034716 AATTTCATAAA-ACTCTTAATAATAAAT-T-TTCTTATATGAATTTATAC
1 AATTT-A-AAATA--ATTAATATTAAATATAAT-TTA-AT-AATATATAT
47034763 AATTTAAAATAATTAATATTAAATATAATTTAATAATGATATAT
1 AATTTAAAATAATTAATATTAAATATAATTTAATAAT-ATATAT
47034807 AATTT
1 AATTT
47034812 CATAAAATTC
Statistics
Matches: 109, Mismatches: 18, Indels: 29
0.70 0.12 0.19
Matches are distributed among these distances:
43 6 0.06
44 43 0.39
45 14 0.13
46 11 0.10
47 32 0.29
48 3 0.03
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (43 bp):
AATTTAAAATAATTAATATTAAATATAATTTAATAATATATAT
Found at i:47034826 original size:47 final size:47
Alignment explanation
Indices: 47034694--47034832 Score: 137
Period size: 47 Copynumber: 3.0 Consensus size: 47
47034684 TAAATATTAC
* *
47034694 ATATAATTTAATAATAATATATAATTTCATAAAACTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
* * * ** *
47034741 AT-T--TTCTTAT-ATGAATTTATACAATT--TAAAATAATTAATATTAA
1 ATATAATT-TAATAATG-ATATATA-ATTTCATAAAATTCTTAATAATAA
47034785 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
1 ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
47034832 A
1 A
47034833 ATGTTCTTAT
Statistics
Matches: 69, Mismatches: 14, Indels: 18
0.68 0.14 0.18
Matches are distributed among these distances:
44 20 0.29
45 13 0.19
46 13 0.19
47 23 0.33
ACGTcount: A:0.50, C:0.05, G:0.01, T:0.43
Consensus pattern (47 bp):
ATATAATTTAATAATGATATATAATTTCATAAAATTCTTAATAATAA
Found at i:47044034 original size:100 final size:97
Alignment explanation
Indices: 47043839--47044036 Score: 342
Period size: 100 Copynumber: 2.0 Consensus size: 97
47043829 AAAAGGAATA
* *
47043839 ATAAAATAACACAAAAAAAATAAAAAAATAATGAGATAATAATGACAATATAACAAAATGTACAA
1 ATAAAATAACACAAAAAAAAAAAAAAAATAATGAGATAATAATGACAATAGAACAAAATGTACAA
47043904 ATATGAAAAATATAAATTTTAAAATAAAAAGC
66 ATATGAAAAATATAAATTTTAAAATAAAAAGC
47043936 ATAAAATAACACAAAAAATAAAAATAAATAATAATGAGATAATAATGACAATAGAACAAAATGTA
1 ATAAAATAACACAAAAAA-AAAAA-AAA-AATAATGAGATAATAATGACAATAGAACAAAATGTA
*
47044001 CAAATATGAACAATATAAATTTTAAAATAAAAAGC
63 CAAATATGAAAAATATAAATTTTAAAATAAAAAGC
47044036 A
1 A
47044037 AGGGAATAAT
Statistics
Matches: 95, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
97 18 0.19
98 4 0.04
99 3 0.03
100 70 0.74
ACGTcount: A:0.65, C:0.07, G:0.07, T:0.22
Consensus pattern (97 bp):
ATAAAATAACACAAAAAAAAAAAAAAAATAATGAGATAATAATGACAATAGAACAAAATGTACAA
ATATGAAAAATATAAATTTTAAAATAAAAAGC
Found at i:47044791 original size:18 final size:19
Alignment explanation
Indices: 47044755--47044800 Score: 69
Period size: 18 Copynumber: 2.5 Consensus size: 19
47044745 CTTTTTGTAA
*
47044755 TTGGACTTGTAACTTTTAT
1 TTGGGCTTGTAACTTTTAT
47044774 TTGGGCTTGTAA-TTTTAT
1 TTGGGCTTGTAACTTTTAT
47044792 TTGGG-TTGT
1 TTGGGCTTGT
47044801 TTGTAATTTA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
17 4 0.15
18 11 0.42
19 11 0.42
ACGTcount: A:0.15, C:0.07, G:0.24, T:0.54
Consensus pattern (19 bp):
TTGGGCTTGTAACTTTTAT
Found at i:47060900 original size:29 final size:29
Alignment explanation
Indices: 47060868--47060934 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
47060858 ACCAAAAAAA
47060868 GCCGTTTTTTTCAAAATTTACCGAAATGG
1 GCCGTTTTTTTCAAAATTTACCGAAATGG
* * ** *
47060897 GCCGATTTTTTGATTATTTACCGGAATGG
1 GCCGTTTTTTTCAAAATTTACCGAAATGG
*
47060926 GCCATTTTT
1 GCCGTTTTT
47060935 CGGAAAATCA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 31 1.00
ACGTcount: A:0.22, C:0.16, G:0.19, T:0.42
Consensus pattern (29 bp):
GCCGTTTTTTTCAAAATTTACCGAAATGG
Found at i:47061893 original size:28 final size:29
Alignment explanation
Indices: 47061836--47061900 Score: 80
Period size: 28 Copynumber: 2.3 Consensus size: 29
47061826 GATTTCCCGG
*
47061836 AAAAT-GGCCCATTCCGGTAAATAATCAA
1 AAAATCGGCCCATTCCGGTAAATAATAAA
* *
47061864 AAAATCGGCCCATTTCGGTAAAT-TTAAA
1 AAAATCGGCCCATTCCGGTAAATAATAAA
*
47061892 AAAAACGGC
1 AAAATCGGC
47061901 TTTTTTTGGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 16 0.50
29 16 0.50
ACGTcount: A:0.43, C:0.20, G:0.15, T:0.22
Consensus pattern (29 bp):
AAAATCGGCCCATTCCGGTAAATAATAAA
Found at i:47064092 original size:21 final size:22
Alignment explanation
Indices: 47064058--47064101 Score: 56
Period size: 21 Copynumber: 2.0 Consensus size: 22
47064048 AAAGTACATT
*
47064058 TATATTATATATAAAT-TAAATA
1 TATACTATATAT-AATCTAAATA
47064080 TATACTAT-TATAATCTAAATA
1 TATACTATATATAATCTAAATA
47064101 T
1 T
47064102 TAAAATACAG
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
20 3 0.15
21 10 0.50
22 7 0.35
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (22 bp):
TATACTATATATAATCTAAATA
Found at i:47066990 original size:2 final size:2
Alignment explanation
Indices: 47066983--47067019 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
47066973 ACATATAAGC
*
47066983 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TC TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
47067020 TAGACACCCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.03, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:47068156 original size:21 final size:21
Alignment explanation
Indices: 47068132--47068174 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
47068122 ATAGATTTTC
*
47068132 TTATCTTTTTAAAATTATTAT
1 TTATCTATTTAAAATTATTAT
* *
47068153 TTATCTATTTAAATTTTTTAT
1 TTATCTATTTAAAATTATTAT
47068174 T
1 T
47068175 ATATTGTTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.05, G:0.00, T:0.65
Consensus pattern (21 bp):
TTATCTATTTAAAATTATTAT
Found at i:47068176 original size:20 final size:20
Alignment explanation
Indices: 47068127--47068176 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 20
47068117 AATTTATAGA
* *
47068127 TTTTCTTATCTTTTTAAAAT
1 TTTTATTATCTATTTAAAAT
* *
47068147 TATTATTTATCTATTTAAATT
1 TTTTA-TTATCTATTTAAAAT
47068168 TTTTATTAT
1 TTTTATTAT
47068177 ATTGTTTGCT
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
20 7 0.29
21 17 0.71
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (20 bp):
TTTTATTATCTATTTAAAAT
Found at i:47068250 original size:16 final size:16
Alignment explanation
Indices: 47068225--47068256 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
47068215 TATAATTAAG
*
47068225 AAATTTTTTAAAAAAT
1 AAATTATTTAAAAAAT
47068241 AAATTATTTAAAAAAT
1 AAATTATTTAAAAAAT
47068257 TCAACATTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (16 bp):
AAATTATTTAAAAAAT
Found at i:47072536 original size:5 final size:5
Alignment explanation
Indices: 47072526--47072552 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
47072516 AGCACTGCCT
47072526 AACCC AACCC AACCC AACCC AACCC AA
1 AACCC AACCC AACCC AACCC AACCC AA
47072553 AGTTAGGTGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.44, C:0.56, G:0.00, T:0.00
Consensus pattern (5 bp):
AACCC
Found at i:47078034 original size:41 final size:41
Alignment explanation
Indices: 47077977--47078173 Score: 360
Period size: 41 Copynumber: 4.8 Consensus size: 41
47077967 GAATGTAATA
* *
47077977 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
47078018 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
47078059 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
47078100 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
47078141 CAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG
1 CAGACTATATGTCTAGCAGGCTTAA-TGCCGGTG
47078174 TACTGAATCA
Statistics
Matches: 153, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
40 3 0.02
41 150 0.98
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.30
Consensus pattern (41 bp):
CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
Found at i:47078198 original size:82 final size:82
Alignment explanation
Indices: 47077977--47078215 Score: 322
Period size: 82 Copynumber: 2.9 Consensus size: 82
47077967 GAATGTAATA
* * * * *
47077977 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATATCAGACTATAAGCCTAGCAGGCTTA
47078042 ATGCCGGTGATACATTT
66 ATGCCGGTGATACATTT
* * *
47078059 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATATCAGACTATAAGCCTAGCAGGCTTA
47078124 ATGCCGGTGATACATTT
66 ATGCCGGTGATACATTT
* *
47078141 CAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG-TAC-TGAATCAGGCTTTAAGCCTAGCAGGC
1 CAGACTATATGTCTAGCAGGCTTAA-TGCCGGTGATACAT--ATCAGACTATAAGCCTAGCAGGC
**
47078203 AAAATGCCGGTGA
63 TTAATGCCGGTGA
47078216 ATCTGTTTAA
Statistics
Matches: 145, Mismatches: 9, Indels: 6
0.91 0.06 0.04
Matches are distributed among these distances:
80 1 0.01
81 6 0.04
82 138 0.95
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (82 bp):
CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATATCAGACTATAAGCCTAGCAGGCTTA
ATGCCGGTGATACATTT
Found at i:47078198 original size:123 final size:123
Alignment explanation
Indices: 47077977--47078215 Score: 349
Period size: 123 Copynumber: 1.9 Consensus size: 123
47077967 GAATGTAATA
*
47077977 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
1 CAGACTATAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
* * * **
47078042 ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
66 ATGCCGGTGATACATATCAGACTATAAGCCTAGCAGGCAAAATGCCGGTGATACATTT
*
47078100 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGC-TA
1 CAGACTATAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
* *
47078164 AGTGCCGGTG-TAC-TGAATCAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGA
66 A-TGCCGGTGATACAT--ATCAGACTATAAGCCTAGCAGGCAAAATGCCGGTGA
47078216 ATCTGTTTAA
Statistics
Matches: 104, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
121 1 0.01
122 6 0.06
123 97 0.93
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (123 bp):
CAGACTATAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
ATGCCGGTGATACATATCAGACTATAAGCCTAGCAGGCAAAATGCCGGTGATACATTT
Found at i:47085640 original size:41 final size:40
Alignment explanation
Indices: 47085583--47085802 Score: 342
Period size: 41 Copynumber: 5.5 Consensus size: 40
47085573 GAATGTAATA
*
47085583 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTAT-AGTCTAGCAGGCTTAATGCCGGTGATACATTT
47085624 CAGACTATAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTAT-AGTCTAGCAGGCTTAATGCCGGTGATACATTT
47085665 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATA-GTCTAGCAGGCTTAATGCCGGTGATACATTT
*
47085706 CAGACTATA-TGTAGCAGGCTTAATGCC-GTGATGACATTT
1 CAGACTATAGTCTAGCAGGCTTAATGCCGGTGAT-ACATTT
*
47085745 CAGAC-ATTGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATAGTCTAGCAGGCTTAATGCCGGTGATACATTT
47085784 CAGACTAT-GT-TAGCAGGCT
1 CAGACTATAGTCTAGCAGGCT
47085803 AGTGCTGTAG
Statistics
Matches: 170, Mismatches: 4, Indels: 13
0.91 0.02 0.07
Matches are distributed among these distances:
38 16 0.09
39 58 0.34
40 8 0.05
41 88 0.52
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (40 bp):
CAGACTATAGTCTAGCAGGCTTAATGCCGGTGATACATTT
Found at i:47086903 original size:214 final size:213
Alignment explanation
Indices: 47086462--47087397 Score: 924
Period size: 214 Copynumber: 4.4 Consensus size: 213
47086452 AAATGAGTTT
* * * * *
47086462 TTATCTCCCTAAAGTTGCAGTGG-GCTGATTAAAGCCAATAATCCTATCTTCCTGAAGTTGCAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAAT-CTATC-TCCTGAAGTTACAGT
* *
47086526 GGAGGCGGATTAAAACCTCAGATCTTATCTCTCTAAAGTTGCAGAGAGCAGATCGCATCTAGTCA
64 GGA-GCGGATTAAAACCTCAGATCTTATCTCTCTGAAGATGCAGAGAGCAGATCGCATCTAGTCA
* * * * * *
47086591 TGTCTCTCTG-GGTTGCAGTGGAGCAGAATATGTAAGCAAGTCTTATCTTCTGAAGTTGTAAGTG
128 TATCTCT-TGAAGTTGCAGTGGAGCAGAATAAGAAAGCAAGTCTTATCCTCTGAAGTTG-CAGTG
* *
47086655 AGGCA-A-CGGAGATGGCAAATC
191 AGGCAGATTGAAGATGGCAAATC
*
47086676 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAATTTATCTCCTGAAGTTACACGTG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAATCTATCTCCTGAAGTTACA-GTG
* ** * *
47086741 GAGTGGATT-AAATTTCAGATCTTATTCTCTCTGAAGATGCAGAGAGTAGAATCGCATCTAGTCT
65 GAGCGGATTAAAACCTCAGATCTTA-TCTCTCTGAAGATGCAGAGAGCAG-ATCGCATCTAGTCA
* *
47086805 TATCTCTTGAAGTTACAGTGGAGGCAGACTAAGCAAAGCAAGTCTTATCCTCTGAAGTTGCAGTG
128 TATCTCTTGAAGTTGCAGTGGA-GCAGAATAAG-AAAGCAAGTCTTATCCTCTGAAGTTGCAGTG
* *
47086870 AGGCAGA-TGAAGGTGGCAAGTC
191 AGGCAGATTGAAGATGGCAAATC
* *
47086892 -TATCT-CCTGAAGTTGTAGTAGG-GCAGATTAAAGCCGACAATCCCTATCT--TGAA-TTGCAG
1 TTATCTCCCTGAAGTTGCAGT-GGAGCAGATTAAAGCCGACAAT--CTATCTCCTGAAGTTACAG
* *
47086951 -GGAGCGGATTAAAACCTCAGATCTTAT-TCTCTGAAGTTGCAGAGAACAGATCGCATCTAGTCA
63 TGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGATGCAGAGAGCAGATCGCATCTAGTCA
** * * * * *
47087014 TATC-C-CCAAGGTTGCAGTGGAGCCGAATATGTAAGCAAGTC-TATGCTCCTGAAGTTACAGTG
128 TATCTCTTGAA-GTTGCAGTGGAGCAGAATAAGAAAGCAAGTCTTATCCT-CTGAAGTTGCAGTG
* * *
47087076 AGGCAAACTGAA-AAGGCAAATC
191 AGGCAGATTGAAGATGGCAAATC
*
47087098 -TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAAGCCGACAATCTAT-TCCCTGAAGTTACAGT
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAGCCGACAATCTATCT-CCTGAAGTTACAG-
* * * * **
47087161 TGGAGTGGA-TAAAA-TTCAGATCTTATCTCTCTGAACATGCAGAGAGTAGAT-GCATCTAGTTT
63 TGGAGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGATGCAGAGAGCAGATCGCATCTAGTCA
* * ** * *
47087223 TATCTCCCTGAAGTTGGCAGTGGAGCAGACTAAGAAAGCAAGTCTTATCCTCCAAAGCGTGGCGG
128 TATCT-CTTGAAGTT-GCAGTGGAGCAGAATAAGAAAGCAAGTCTTATCCTCTGAA--GTTGCAG
47087288 TGAGGCAGATTTG-AGAGTGGCAAATC
189 TGAGGCAGA-TTGAAGA-TGGCAAATC
* * *
47087314 TTAATCT-CCTGAAG-TGTAGTGGAGCAGATTAAAGTCGACAATCTA--TCCTGAAGTTGCAGTG
1 TT-ATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAATCTATCTCCTGAAGTTACAGTG
* *
47087375 AAGCGG-TT-AAACCTCCGATCTTA
65 GAGCGGATTAAAACCTCAGATCTTA
47087398 ATCCCCTGAA
Statistics
Matches: 601, Mismatches: 82, Indels: 80
0.79 0.11 0.10
Matches are distributed among these distances:
205 6 0.01
206 46 0.08
207 32 0.05
208 27 0.04
209 46 0.08
210 44 0.07
211 24 0.04
212 72 0.12
213 62 0.10
214 110 0.18
215 57 0.09
216 63 0.10
217 8 0.01
218 4 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (213 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGACAATCTATCTCCTGAAGTTACAGTGG
AGCGGATTAAAACCTCAGATCTTATCTCTCTGAAGATGCAGAGAGCAGATCGCATCTAGTCATAT
CTCTTGAAGTTGCAGTGGAGCAGAATAAGAAAGCAAGTCTTATCCTCTGAAGTTGCAGTGAGGCA
GATTGAAGATGGCAAATC
Found at i:47087108 original size:43 final size:42
Alignment explanation
Indices: 47087048--47087165 Score: 125
Period size: 43 Copynumber: 2.7 Consensus size: 42
47087038 GAATATGTAA
*
47087048 GCAAGTCTATGCT-CCTGAAGTTACAGT-GAGGCAAACTGAAAAG
1 GCAAATCTAT-CTCCCTGAAGTTACAGTGGA-GCAAA-TGAAAAG
* *
47087091 GCAAATCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAAG
1 GCAAATCTATCTCCCTGAAGTTACAGTGGAGCAAATGAAAAG
*
47087133 CCGACAATCTAT-TCCCTGAAGTTACAGTTGGAG
1 GC-A-AATCTATCTCCCTGAAGTTACAG-TGGAG
47087166 TGGATAAAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
42 9 0.14
43 43 0.65
44 14 0.21
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (42 bp):
GCAAATCTATCTCCCTGAAGTTACAGTGGAGCAAATGAAAAG
Found at i:47087409 original size:422 final size:423
Alignment explanation
Indices: 47086507--47087411 Score: 1204
Period size: 422 Copynumber: 2.1 Consensus size: 423
47086497 CAATAATCCT
* *
47086507 ATCT-TCCTGAAGTTGCAGTGGAGGCGGATTAAAACCTCAGATCTTATCTCTCTAAAGTTGCAGA
1 ATCTATCCTGAAGTTGCAGT-GAAGCGGATTAAAACCTCAGATCTTATC-CTCTGAAGTTGCAGA
* * * **
47086571 GAGCAGATCGCATCTAGTCATGTCTCTCTGGGTTGCAGTGGAGCAGAATATGTAAGCAAGTCTTA
64 GAACAGATCGCATCTAGTCATATCTCCCAAGGTTGCAGTGGAGCAGAATATGTAAGCAAGTCTTA
* * * *
47086636 TCTTCTGAAGTTGTAAGTGAGGCAACGGAGATGGCAAATCTTATCTCCCTGAAGTTGCAGTGGAG
129 TCTCCTGAAGTTGTAAGTGAGGCAACGGAAAAGGCAAATCTTATCTCCCTGAAGTTACAGTGGAG
* *
47086701 CAGATTAAAGCCGACAATTTATCTCCTGAAGTTACACGTGGAGTGGATTAAATTTCAGATCTTAT
194 CAGATTAAAGCCGACAATCTATCTCCTGAAGTTACACGTGGAGTGGATTAAAATTCAGATCTTAT
* *
47086766 TCTCTCTGAAGATGCAGAGAGTAGAATCGCATCTAGTCTTATCTCTTGAAGTTACAGTGGAGGCA
259 TCTCTCTGAACATGCAGAGAGTAGAATCGCATCTAGTCTTATCTCCTGAAGTTACAGTGGAGGCA
** * *
47086831 GACTAAGCAAAGCAAGTCTTATCCTCTGAAGTTGCAGTGAGGCAGATGAAGGTGGCAAGTCTATC
324 GACTAAGCAAAGCAAGTCTTATCCTCCAAAGTGGCAGTGAGGCAGATGAAGGTGGCAAATCTATC
47086896 TCCTGAAGTTGTAGTAGGGCAGATTAAAGCCGACA
389 TCCTGAAGTTGTAGTAGGGCAGATTAAAGCCGACA
* * *
47086931 ATCCCTATCTTGAA-TTGCAG-GGAGCGGATTAAAACCTCAGATCTTATTCTCTGAAGTTGCAGA
1 AT--CTATCCTGAAGTTGCAGTGAAGCGGATTAAAACCTCAGATCTTATCCTCTGAAGTTGCAGA
*
47086994 GAACAGATCGCATCTAGTCATATC-CCCAAGGTTGCAGTGGAGCCGAATATGTAAGCAAGTC-TA
64 GAACAGATCGCATCTAGTCATATCTCCCAAGGTTGCAGTGGAGCAGAATATGTAAGCAAGTCTTA
*
47087057 TGCTCCTGAAG-T-TACAGTGAGGCAAACTGAAAAGGCAAATC-TATCTCCCTGAAGTTACAGTG
129 T-CTCCTGAAGTTGTA-AGTGAGGC-AACGGAAAAGGCAAATCTTATCTCCCTGAAGTTACAGTG
47087119 GAGCAGATTAAAAGCCGACAATCTAT-TCCCTGAAGTTACA-GTTGGAGTGGA-TAAAATTCAGA
191 GAGCAGATT-AAAGCCGACAATCTATCT-CCTGAAGTTACACG-TGGAGTGGATTAAAATTCAGA
* *
47087181 TCTTA-TCTCTCTGAACATGCAGAGAGTAG-AT-GCATCTAGTTTTATCTCCCTGAAGTTGGCAG
253 TCTTATTCTCTCTGAACATGCAGAGAGTAGAATCGCATCTAGTCTTATCT-CCTGAAGTT-ACAG
*
47087243 TGGA-GCAGACTAAG-AAAGCAAGTCTTATCCTCCAAAGCGTGGCGGTGAGGCAGATTTG-AGAG
316 TGGAGGCAGACTAAGCAAAGCAAGTCTTATCCTCCAAA--GTGGCAGTGAGGCAGA--TGAAG-G
*
47087305 TGGCAAATCTTAATCTCCTGAAG-TGTAGT-GGAGCAGATTAAAGTCGACA
376 TGGCAAATC-T-ATCTCCTGAAGTTGTAGTAGG-GCAGATTAAAGCCGACA
* *
47087354 ATCTATCCTGAAGTTGCAGTGAAGCGG-TT-AAACCTCCGATCTTAATCCCCTGAAGTTG
1 ATCTATCCTGAAGTTGCAGTGAAGCGGATTAAAACCTCAGATCTT-ATCCTCTGAAGTTG
47087412 TATGGGGGCA
Statistics
Matches: 426, Mismatches: 33, Indels: 46
0.84 0.07 0.09
Matches are distributed among these distances:
418 35 0.08
419 20 0.05
420 46 0.11
421 82 0.19
422 124 0.29
423 67 0.16
424 38 0.09
426 8 0.02
427 6 0.01
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.27
Consensus pattern (423 bp):
ATCTATCCTGAAGTTGCAGTGAAGCGGATTAAAACCTCAGATCTTATCCTCTGAAGTTGCAGAGA
ACAGATCGCATCTAGTCATATCTCCCAAGGTTGCAGTGGAGCAGAATATGTAAGCAAGTCTTATC
TCCTGAAGTTGTAAGTGAGGCAACGGAAAAGGCAAATCTTATCTCCCTGAAGTTACAGTGGAGCA
GATTAAAGCCGACAATCTATCTCCTGAAGTTACACGTGGAGTGGATTAAAATTCAGATCTTATTC
TCTCTGAACATGCAGAGAGTAGAATCGCATCTAGTCTTATCTCCTGAAGTTACAGTGGAGGCAGA
CTAAGCAAAGCAAGTCTTATCCTCCAAAGTGGCAGTGAGGCAGATGAAGGTGGCAAATCTATCTC
CTGAAGTTGTAGTAGGGCAGATTAAAGCCGACA
Found at i:47095106 original size:41 final size:41
Alignment explanation
Indices: 47095049--47095286 Score: 433
Period size: 41 Copynumber: 5.8 Consensus size: 41
47095039 GAATGTAATA
* *
47095049 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
47095090 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
47095131 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
47095172 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
*
47095213 CAAACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
1 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
47095254 CAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG
1 CAGACTATATGTCTAGCAGGCTTAA-TGCCGGTG
47095287 TACTGAATCA
Statistics
Matches: 192, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
40 3 0.02
41 189 0.98
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31
Consensus pattern (41 bp):
CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
Found at i:47095311 original size:123 final size:123
Alignment explanation
Indices: 47095049--47095328 Score: 440
Period size: 123 Copynumber: 2.3 Consensus size: 123
47095039 GAATGTAATA
*
47095049 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAAACTATATGTCTAGCAGGCTTA
*
47095114 ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTT
66 ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATAT
* *
47095172 CAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATTTCAAACTATATGTCTAGCAGGCTTA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAAACTATATGTCTAGCAGGCTTA
47095237 ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGC-TAAGTGCCGGTG-TAC-TGAAT
66 ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTAA-TGCCGGTGATACAT--AT
* * **
47095295 CAGGCTTTAAGCCTAGCAGGCAAAATGCCGGTGA
1 CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGA
47095329 ATCTGTTTAA
Statistics
Matches: 144, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
121 1 0.01
122 6 0.04
123 137 0.95
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (123 bp):
CAGACTTTAAGTCTAGCAGGCTTAATGCCGGTGATACATTTCAAACTATATGTCTAGCAGGCTTA
ATGCCGGTGATACATTTCAGACTATATGTCTAGCAGGCTTAATGCCGGTGATACATAT
Found at i:47098563 original size:39 final size:36
Alignment explanation
Indices: 47098478--47098564 Score: 86
Period size: 39 Copynumber: 2.2 Consensus size: 36
47098468 GTAAACATGT
47098478 ACATATATACGTATATAACTATCATAAAATATAAAA
1 ACATATATACGTATATAACTATCATAAAATATAAAA
* *
47098514 AGTATGTATATAGGTATATATA-TGATTCATAAAATATAAAGA
1 A-CA--TATATACGTATATA-ACT-A-TCATAAAATATAAA-A
47098556 ACATATATA
1 ACATATATA
47098565 AACTACATAT
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
36 1 0.02
37 1 0.02
39 20 0.49
40 2 0.05
41 15 0.37
42 2 0.05
ACGTcount: A:0.52, C:0.07, G:0.08, T:0.33
Consensus pattern (36 bp):
ACATATATACGTATATAACTATCATAAAATATAAAA
Found at i:47098800 original size:3 final size:3
Alignment explanation
Indices: 47098792--47098816 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
47098782 TATATGAGGA
47098792 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
47098817 GATTTATTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:47104390 original size:27 final size:28
Alignment explanation
Indices: 47104342--47104394 Score: 74
Period size: 27 Copynumber: 1.9 Consensus size: 28
47104332 ACAGAAAAAT
*
47104342 AGAAAGAAGAAGAATAAGAGAGAATTTG
1 AGAAAGAAGAAGAATAAAAGAGAATTTG
47104370 AGAAAG-AGAAGAGA-AAAAGAGAATT
1 AGAAAGAAGAAGA-ATAAAAGAGAATT
47104395 CTAAAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.60, C:0.00, G:0.28, T:0.11
Consensus pattern (28 bp):
AGAAAGAAGAAGAATAAAAGAGAATTTG
Found at i:47105731 original size:17 final size:16
Alignment explanation
Indices: 47105703--47105734 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
47105693 AGTTTTTTTA
47105703 TAAAATATAAAATATC
1 TAAAATATAAAATATC
47105719 TAAAATAATAAAATAT
1 TAAAAT-ATAAAATAT
47105735 TGAAATTGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (16 bp):
TAAAATATAAAATATC
Found at i:47107914 original size:60 final size:60
Alignment explanation
Indices: 47107836--47107962 Score: 186
Period size: 60 Copynumber: 2.1 Consensus size: 60
47107826 TAAAACTTTT
* * *
47107836 AGTCCAATTAATTTCTAGATGTTAATCATTCATTGAACATTTGATTTGCTAGTTCTATCA
1 AGTCCAATTAATTTCTAGATGTGAATCATTCAATGAACATTAGATTTGCTAGTTCTATCA
* * *
47107896 AGTCTAATTAATTTCTAGATGTGCATCATTCAATGAACATTAGATTTTCTAGTTCTATC-
1 AGTCCAATTAATTTCTAGATGTGAATCATTCAATGAACATTAGATTTGCTAGTTCTATCA
47107955 A-TCCAATT
1 AGTCCAATT
47107963 TGTCCATGCA
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
58 6 0.10
59 1 0.02
60 53 0.88
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.43
Consensus pattern (60 bp):
AGTCCAATTAATTTCTAGATGTGAATCATTCAATGAACATTAGATTTGCTAGTTCTATCA
Found at i:47109378 original size:14 final size:14
Alignment explanation
Indices: 47109352--47109395 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
47109342 TAAGGTTTGG
47109352 TTAATTAAATTTTAA
1 TTAATT-AATTTTAA
*
47109367 TTAATTAATTTTGA
1 TTAATTAATTTTAA
*
47109381 TTAATTAAGTTTAA
1 TTAATTAATTTTAA
47109395 T
1 T
47109396 CCAAGTATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
14 20 0.77
15 6 0.23
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (14 bp):
TTAATTAATTTTAA
Found at i:47111127 original size:41 final size:42
Alignment explanation
Indices: 47111082--47111256 Score: 121
Period size: 41 Copynumber: 4.3 Consensus size: 42
47111072 GATTCACTGG
**
47111082 CACTTTA-CCTGATAGGCTTATAGTTTAATTCAGTTCACCGA
1 CACTTTAGCCTGATAGGCTTATAGCCTAATTCAGTTCACCGA
* * * *
47111123 CAC-TTAGCCTGTTAGGCTTGTAGCCTGATTCAGTTCACCGG
1 CACTTTAGCCTGATAGGCTTATAGCCTAATTCAGTTCACCGA
* * * * * *
47111164 CAC-TTAGCCTGCTAGACGTATAGTCC-GATTCAATTCACCGG
1 CACTTTAGCCTGATAGGCTTATAG-CCTAATTCAGTTCACCGA
* * * * * *
47111205 CA-TTTAGCCTGCTAGACGTATAGTCC-GATTCAATTCACCGG
1 CACTTTAGCCTGATAGGCTTATAG-CCTAATTCAGTTCACCGA
47111246 CAC-TTAGCCTG
1 CACTTTAGCCTG
47111257 CTAGACGTAT
Statistics
Matches: 119, Mismatches: 11, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
40 3 0.03
41 114 0.96
42 2 0.02
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (42 bp):
CACTTTAGCCTGATAGGCTTATAGCCTAATTCAGTTCACCGA
Found at i:47111283 original size:41 final size:41
Alignment explanation
Indices: 47111109--47111270 Score: 236
Period size: 41 Copynumber: 4.0 Consensus size: 41
47111099 TTATAGTTTA
* * * * * *
47111109 ATTCAGTTCACCGACACTTAGCCTGTTAGGCTTGTAG-CCTG
1 ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTCC-G
*
47111150 ATTCAGTTCACCGGCACTTAGCCTGCTAGACGTATAGTCCG
1 ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTCCG
*
47111191 ATTCAATTCACCGGCATTTAGCCTGCTAGACGTATAGTCCG
1 ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTCCG
47111232 ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTC
1 ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTC
47111271 TGAATAATTT
Statistics
Matches: 112, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
41 110 0.98
42 2 0.02
ACGTcount: A:0.23, C:0.28, G:0.20, T:0.29
Consensus pattern (41 bp):
ATTCAATTCACCGGCACTTAGCCTGCTAGACGTATAGTCCG
Found at i:47112946 original size:13 final size:13
Alignment explanation
Indices: 47112928--47112952 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
47112918 CAATCAAATG
47112928 CACACAAAATAAA
1 CACACAAAATAAA
47112941 CACACAAAATAA
1 CACACAAAATAA
47112953 TATTAATAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.68, C:0.24, G:0.00, T:0.08
Consensus pattern (13 bp):
CACACAAAATAAA
Found at i:47124013 original size:29 final size:29
Alignment explanation
Indices: 47123978--47124040 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
47123968 ATTATGTATA
*
47123978 ATAAACATTAAATAAA-AAATTAAAAATTT
1 ATAAACA-TAAATAAATAAACTAAAAATTT
* * *
47124007 ATAAACATATATAAATGAACTAAAATTTT
1 ATAAACATAAATAAATAAACTAAAAATTT
47124036 ATAAA
1 ATAAA
47124041 GTTGTAATTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 7 0.24
29 22 0.76
ACGTcount: A:0.62, C:0.05, G:0.02, T:0.32
Consensus pattern (29 bp):
ATAAACATAAATAAATAAACTAAAAATTT
Found at i:47126078 original size:24 final size:24
Alignment explanation
Indices: 47126051--47126102 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 24
47126041 ACTATTTTTC
47126051 TATTTAATTAATTATTTATTATTA-
1 TATTTAA-TAATTATTTATTATTAT
* *
47126075 TA-TT-ATACTTGTTTATTATTAT
1 TATTTAATAATTATTTATTATTAT
47126097 TATTTA
1 TATTTA
47126103 TTATTTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 6
0.74 0.06 0.19
Matches are distributed among these distances:
21 14 0.61
22 3 0.13
23 4 0.17
24 2 0.09
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (24 bp):
TATTTAATAATTATTTATTATTAT
Found at i:47126124 original size:31 final size:34
Alignment explanation
Indices: 47126054--47126128 Score: 90
Period size: 34 Copynumber: 2.4 Consensus size: 34
47126044 ATTTTTCTAT
47126054 TTAATTA--ATTATTTATTATTATATTATACTTG
1 TTAATTATTATTATTTATTATTATATTATACTTG
*
47126086 TTTATTATTATTATTTATTATT-T-TTAATA-TTG
1 TTAATTATTATTATTTATTATTATATT-ATACTTG
47126118 -TAATTATTATT
1 TTAATTATTATT
47126129 TTCGTGTACA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
31 10 0.26
32 11 0.29
33 4 0.11
34 13 0.34
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.64
Consensus pattern (34 bp):
TTAATTATTATTATTTATTATTATATTATACTTG
Found at i:47128495 original size:81 final size:81
Alignment explanation
Indices: 47128386--47128810 Score: 563
Period size: 81 Copynumber: 5.2 Consensus size: 81
47128376 CTTCGACATA
* * ** * *
47128386 TATTCATTCAAGGATTAAAAGAAGCATTACAAACTAGTATCATACAAGACAGGATTGTTAATGTT
1 TATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGACAGGATTCTTAATGTT
47128451 TTTGACATATAACTAG
66 TTTGACATATAACTAG
* * * * *
47128467 CATTCATCCGAGGGTTAAAAGATCCATTACGAGCTAGTATCATACAGGTCAGGATTCTTAATGTT
1 TATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGACAGGATTCTTAATGTT
*
47128532 TTTCGACATATAACTTG
66 TTT-GACATATAACTAG
*
47128549 TATTCATCCAAGGGTTAAAAGATCCATTACAAAATAGTATCATACAGGTA-AGGATTCTTAATG-
1 TATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGG-ACAGGATTCTTAATGT
* * *
47128612 ATTTCATCGTATAACTCA-
65 TTTTGA-CATATAACT-AG
*
47128630 TATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGACATGATTCTTAATGTT
1 TATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGACAGGATTCTTAATGTT
** *
47128695 TTCAACGTATAACTCA-
66 TTTGACATATAACT-AG
* *
47128711 TATTCATCGAA-GGTTAAAAGATCCATTACAAACTAGTATCATACAGGACAGGATTCTTAATGCT
1 TATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGACAGGATTCTTAATGTT
*
47128775 TTTGACATATAACTCG
66 TTTGACATATAACTAG
47128791 TATTCATCCAAGGGTTAAAA
1 TATTCATCCAAGGGTTAAAA
47128811 AAGTTACCTT
Statistics
Matches: 301, Mismatches: 35, Indels: 16
0.86 0.10 0.05
Matches are distributed among these distances:
80 74 0.25
81 156 0.52
82 71 0.24
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (81 bp):
TATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGACAGGATTCTTAATGTT
TTTGACATATAACTAG
Found at i:47128627 original size:163 final size:162
Alignment explanation
Indices: 47128385--47128810 Score: 581
Period size: 163 Copynumber: 2.6 Consensus size: 162
47128375 TCTTCGACAT
* * ** * * *
47128385 ATATTCATTCAAGGATTAAAAGAAGCATTACAAACTAGTATCATACAAGACAGGATTGTTAATGT
1 ATATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGACAGGATTCTTAATGC
* * * *
47128450 TTTTGACATATAACTAGCATTCATCCGAGGGTTAAAAGATCCATTACGAGCTAGTATCATACAGG
66 TTTTGACATATAACTAGTATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGG
* * *
47128515 TCAGGATTCTTAATGTTTTTCGACATATAACTT
131 ACAGGATTCTTAATG-TTTTCAACATATAACTC
* *
47128548 GTATTCATCCAAGGGTTAAAAGATCCATTACAAAATAGTATCATACAGGTA-AGGATTCTTAATG
1 ATATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGG-ACAGGATTCTTAATG
* * *
47128612 -ATTTCATCGTATAACTCA-TATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATAC
65 CTTTTGA-CATATAACT-AGTATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATAC
* *
47128675 AGGACATGATTCTTAATGTTTTCAACGTATAACTC
128 AGGACAGGATTCTTAATGTTTTCAACATATAACTC
*
47128710 ATATTCATCGAA-GGTTAAAAGATCCATTACAAACTAGTATCATACAGGACAGGATTCTTAATGC
1 ATATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGACAGGATTCTTAATGC
*
47128774 TTTTGACATATAACTCGTATTCATCCAAGGGTTAAAA
66 TTTTGACATATAACTAGTATTCATCCAAGGGTTAAAA
47128811 AAGTTACCTT
Statistics
Matches: 230, Mismatches: 27, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
160 1 0.00
161 76 0.33
162 32 0.14
163 119 0.52
164 2 0.01
ACGTcount: A:0.37, C:0.16, G:0.15, T:0.32
Consensus pattern (162 bp):
ATATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGGACAGGATTCTTAATGC
TTTTGACATATAACTAGTATTCATCCAAGGGTTAAAAGATCCATTACAAACTAGTATCATACAGG
ACAGGATTCTTAATGTTTTCAACATATAACTC
Found at i:47135367 original size:22 final size:22
Alignment explanation
Indices: 47135342--47135385 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
47135332 GTTTCTTCTT
47135342 TTATAGAGGTGTTTATGGGCTG
1 TTATAGAGGTGTTTATGGGCTG
47135364 TTATAGAGGTGTTTATGGGCTG
1 TTATAGAGGTGTTTATGGGCTG
47135386 GGTTCAACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.05, G:0.36, T:0.41
Consensus pattern (22 bp):
TTATAGAGGTGTTTATGGGCTG
Found at i:47142734 original size:4 final size:4
Alignment explanation
Indices: 47142725--47142765 Score: 82
Period size: 4 Copynumber: 10.2 Consensus size: 4
47142715 GATTTACAGG
47142725 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA T
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA T
47142766 TTTGTTTTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 37 1.00
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.27
Consensus pattern (4 bp):
TACA
Found at i:47146890 original size:47 final size:46
Alignment explanation
Indices: 47146767--47146966 Score: 152
Period size: 47 Copynumber: 4.1 Consensus size: 46
47146757 GGCAACATGG
* * * *
47146767 GATATGTGATTTCCATATAAGACCATAGCTGGGCTATGGCATCGGTGT
1 GATATGTGA--TCCGTATAAGACCATATCTGGGATATGGTATCGGTGT
*
47146815 GATGTGATTATGAGTTTCCGTATAAGACCATATCTGGGATATGGTATCGGTGT
1 GA--T-A-TGTGA---TCCGTATAAGACCATATCTGGGATATGGTATCGGTGT
* * * ** *
47146868 GATATGTGCTAT-TGTGTAAGACCATATCTAGGATATGACATCAGTGT
1 GATATGTG--ATCCGTATAAGACCATATCTGGGATATGGTATCGGTGT
** *
47146915 GATATGTGATCCGTATAAGACCATGGCTGGGCTATGGCT-TCGGTGT
1 GATATGTGATCCGTATAAGACCATATCTGGGATATGG-TATCGGTGT
47146961 GATATG
1 GATATG
47146967 CGACAAGGTG
Statistics
Matches: 122, Mismatches: 21, Indels: 20
0.75 0.13 0.12
Matches are distributed among these distances:
45 2 0.02
46 31 0.25
47 37 0.30
48 3 0.02
49 3 0.02
50 2 0.02
51 3 0.02
52 4 0.03
53 37 0.30
ACGTcount: A:0.25, C:0.14, G:0.28, T:0.33
Consensus pattern (46 bp):
GATATGTGATCCGTATAAGACCATATCTGGGATATGGTATCGGTGT
Found at i:47148586 original size:12 final size:12
Alignment explanation
Indices: 47148571--47148621 Score: 50
Period size: 12 Copynumber: 4.2 Consensus size: 12
47148561 ATTAGTTTAA
*
47148571 TATTTTAATTAT
1 TATTTTCATTAT
*
47148583 TATTATCATTAT
1 TATTTTCATTAT
* *
47148595 TATTGTT-ACTAC
1 TATT-TTCATTAT
47148607 TATTTTCATTAT
1 TATTTTCATTAT
47148619 TAT
1 TAT
47148622 CAATATTTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
11 2 0.07
12 27 0.90
13 1 0.03
ACGTcount: A:0.29, C:0.08, G:0.02, T:0.61
Consensus pattern (12 bp):
TATTTTCATTAT
Found at i:47148641 original size:33 final size:32
Alignment explanation
Indices: 47148580--47148651 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 32
47148570 ATATTTTAAT
* ** *
47148580 TATTATTATCATTATTATTGTTACTACTATTT
1 TATTATTATCAATATTATTACTACTACTATTA
* *
47148612 TCATTATTATCAATATTTTTACTATTACTATTA
1 T-ATTATTATCAATATTATTACTACTACTATTA
47148645 TATTATT
1 TATTATT
47148652 CGTTTGTATA
Statistics
Matches: 33, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
32 7 0.21
33 26 0.79
ACGTcount: A:0.31, C:0.10, G:0.01, T:0.58
Consensus pattern (32 bp):
TATTATTATCAATATTATTACTACTACTATTA
Found at i:47151080 original size:20 final size:20
Alignment explanation
Indices: 47151055--47151104 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
47151045 TGGCTTAAAA
47151055 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
47151075 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
47151092 GTGGTAGTGGATT
1 TTGGTAGTGGATT
47151105 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:47155709 original size:20 final size:20
Alignment explanation
Indices: 47155684--47155733 Score: 70
Period size: 17 Copynumber: 2.6 Consensus size: 20
47155674 TGGCTTAAAA
47155684 TTGGTAGTGGATTGTTGTTG
1 TTGGTAGTGGATTGTTGTTG
47155704 TTGGTAGTGG---GTTGTTG
1 TTGGTAGTGGATTGTTGTTG
*
47155721 GTGGTAGTGGATT
1 TTGGTAGTGGATT
47155734 AGTGGATGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
17 16 0.62
20 10 0.38
ACGTcount: A:0.10, C:0.00, G:0.44, T:0.46
Consensus pattern (20 bp):
TTGGTAGTGGATTGTTGTTG
Found at i:47156349 original size:17 final size:16
Alignment explanation
Indices: 47156315--47156349 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
47156305 TTTTTTTATA
*
47156315 AATATTTTTAAAAGAT
1 AATATTTTTAAAAAAT
47156331 AATATTTTTAAATAAAT
1 AATATTTTTAAA-AAAT
47156348 AA
1 AA
47156350 AAATAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (16 bp):
AATATTTTTAAAAAAT
Found at i:47165038 original size:45 final size:45
Alignment explanation
Indices: 47164966--47165051 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
47164956 CTTGGTAGAT
* * *
47164966 TCAGTACATAGTAACCACCTTATTAATCAATGATGTCCGGTGGAA
1 TCAGCACATAGCAACCACCTTACTAATCAATGATGTCCGGTGGAA
* *
47165011 TCAGCACATAGCAACTACCTTACTAATCAATGATGTTCGGT
1 TCAGCACATAGCAACCACCTTACTAATCAATGATGTCCGGT
47165052 TCACATAGTA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (45 bp):
TCAGCACATAGCAACCACCTTACTAATCAATGATGTCCGGTGGAA
Found at i:47165112 original size:51 final size:50
Alignment explanation
Indices: 47165048--47165243 Score: 205
Period size: 51 Copynumber: 3.9 Consensus size: 50
47165038 CAATGATGTT
* * *
47165048 CGGTTCACATAGTAGCCTGCACATAGTACTACACATGTGACCATTACCATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCA-TACCATC
* * ** * *
47165099 CGATACACGTAGTAGCCTGCACATAGTACTATACACGTGATTGAAACTATC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGA-CCATACCATC
* ** * * ** *
47165150 CGGTACGCAAAGTAGCCTACACATAGTACTACACATGCAACC-TATCATTC
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCA-TC
47165200 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
1 CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCAT
47165244 CACTTTCACT
Statistics
Matches: 112, Mismatches: 30, Indels: 6
0.76 0.20 0.04
Matches are distributed among these distances:
49 2 0.02
50 37 0.33
51 72 0.64
52 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (50 bp):
CGGTACACGTAGTAGCCTGCACATAGTACTACACACGTGACCATACCATC
Found at i:47167994 original size:14 final size:15
Alignment explanation
Indices: 47167972--47168009 Score: 51
Period size: 15 Copynumber: 2.6 Consensus size: 15
47167962 CAATCAAACA
47167972 CCAGAAAAT-ATTTT
1 CCAGAAAATCATTTT
*
47167986 CCAGTAAATCATTTT
1 CCAGAAAATCATTTT
*
47168001 ACAGAAAAT
1 CCAGAAAAT
47168010 TAAAACATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.32
Consensus pattern (15 bp):
CCAGAAAATCATTTT
Found at i:47170781 original size:32 final size:32
Alignment explanation
Indices: 47170745--47170824 Score: 92
Period size: 32 Copynumber: 2.5 Consensus size: 32
47170735 TTATTCTAAA
*
47170745 TTTTTTTATAACATTTAA-AA-TTTGTCTATACT
1 TTTTTTTATAA-ATTTAATAATTTTGTCTATA-G
* *
47170777 TTTTTTTATAATTTTTAATAATTTTTTCTATAG
1 TTTTTTTATAA-ATTTAATAATTTTGTCTATAG
47170810 TTTTTTTATAAATTT
1 TTTTTTTATAAATTT
47170825 TGTAATATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
32 19 0.46
33 13 0.32
34 9 0.22
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.64
Consensus pattern (32 bp):
TTTTTTTATAAATTTAATAATTTTGTCTATAG
Found at i:47170800 original size:33 final size:32
Alignment explanation
Indices: 47170745--47170839 Score: 104
Period size: 33 Copynumber: 2.9 Consensus size: 32
47170735 TTATTCTAAA
** * *
47170745 TTTTTTTATAACATTTAA-AATTTGTCTATACT
1 TTTTTTTATAATTTTTAATAATTTTTCTATA-G
47170777 TTTTTTTATAATTTTTAATAATTTTTTCTATAG
1 TTTTTTTATAATTTTTAATAA-TTTTTCTATAG
47170810 TTTTTTTATAAATTTTGTAAT-ATTTTTCTA
1 TTTTTTTAT-AATTTT-TAATAATTTTTCTA
47170840 AAAAAATTAT
Statistics
Matches: 55, Mismatches: 4, Indels: 7
0.83 0.06 0.11
Matches are distributed among these distances:
32 16 0.29
33 19 0.35
34 16 0.29
35 4 0.07
ACGTcount: A:0.28, C:0.05, G:0.03, T:0.63
Consensus pattern (32 bp):
TTTTTTTATAATTTTTAATAATTTTTCTATAG
Found at i:47170802 original size:11 final size:11
Alignment explanation
Indices: 47170777--47170825 Score: 55
Period size: 12 Copynumber: 4.4 Consensus size: 11
47170767 TGTCTATACT
47170777 TTTTTTTATAA
1 TTTTTTTATAA
*
47170788 -TTTTTAATAA
1 TTTTTTTATAA
*
47170798 TTTTTTCTATAG
1 TTTTTT-TATAA
47170810 TTTTTTTATAAA
1 TTTTTTTAT-AA
47170822 TTTT
1 TTTT
47170826 GTAATATTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
10 9 0.29
11 8 0.26
12 14 0.45
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (11 bp):
TTTTTTTATAA
Found at i:47170807 original size:34 final size:33
Alignment explanation
Indices: 47170745--47170836 Score: 100
Period size: 34 Copynumber: 2.8 Consensus size: 33
47170735 TTATTCTAAA
** * *
47170745 TTTTTTTATAACATTTAA-AA-TTTGTCTATACT
1 TTTTTTTATAATTTTTAATAATTTTTTCTATA-G
47170777 TTTTTTTATAATTTTTAATAATTTTTTCTATAG
1 TTTTTTTATAATTTTTAATAATTTTTTCTATAG
47170810 TTTTTTTATAAATTTTGTAAT-ATTTTT
1 TTTTTTTAT-AATTTT-TAATAATTTTT
47170837 CTAAAAAAAT
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
32 16 0.31
33 11 0.21
34 21 0.40
35 4 0.08
ACGTcount: A:0.28, C:0.04, G:0.03, T:0.64
Consensus pattern (33 bp):
TTTTTTTATAATTTTTAATAATTTTTTCTATAG
Found at i:47170876 original size:10 final size:10
Alignment explanation
Indices: 47170861--47170899 Score: 53
Period size: 10 Copynumber: 3.9 Consensus size: 10
47170851 ACATTTAAAT
47170861 ATTTTCTATA
1 ATTTTCTATA
47170871 ATTTTCTATA
1 ATTTTCTATA
47170881 ATTATT-TATA
1 ATT-TTCTATA
*
47170891 AATTTCTAT
1 ATTTTCTAT
47170900 TTTATGATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
9 2 0.08
10 22 0.85
11 2 0.08
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.59
Consensus pattern (10 bp):
ATTTTCTATA
Found at i:47170926 original size:15 final size:16
Alignment explanation
Indices: 47170900--47170940 Score: 52
Period size: 14 Copynumber: 2.8 Consensus size: 16
47170890 AAATTTCTAT
*
47170900 TTTATGATTTTTATAA
1 TTTATGATTTTTAAAA
47170916 TTTAT-ATTTTTAAAA
1 TTTATGATTTTTAAAA
47170931 -TTA-GATTTTT
1 TTTATGATTTTT
47170941 TTTAAATTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 9 0.39
15 9 0.39
16 5 0.22
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (16 bp):
TTTATGATTTTTAAAA
Found at i:47172676 original size:21 final size:21
Alignment explanation
Indices: 47172650--47172841 Score: 93
Period size: 21 Copynumber: 9.1 Consensus size: 21
47172640 CCGAAGGCTG
*
47172650 AACAGAAGCTCATGAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* * * * *
47172671 AACAGAAACCCATAAGGGTTG
1 AACAGAAGCTCATAAGAGCTA
* *
47172692 AACAGGAGCTCGTAAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
* * *
47172713 AAC-GAAAACTCATATGAGTTGA
1 AACAG-AAGCTCATAAGAGCT-A
*
47172735 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCATAAGAGCTA
** * * * *
47172756 AATGGAAACTCATAATAGTTG
1 AACAGAAGCTCATAAGAGCTA
*
47172777 AACAGAAGCTCA-ATAGAGCTG
1 AACAGAAGCTCATA-AGAGCTA
* * * *
47172798 AACAAAAACCCATATGAG-TCA
1 AACAGAAGCTCATAAGAGCT-A
* * *
47172819 AATAGAAGCTCGTGAGAGCTA
1 AACAGAAGCTCATAAGAGCTA
47172840 AA
1 AA
47172842 TGGAAAGTAA
Statistics
Matches: 120, Mismatches: 44, Indels: 14
0.67 0.25 0.08
Matches are distributed among these distances:
20 3 0.03
21 98 0.82
22 18 0.15
23 1 0.01
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.17
Consensus pattern (21 bp):
AACAGAAGCTCATAAGAGCTA
Found at i:47172696 original size:42 final size:42
Alignment explanation
Indices: 47172648--47172841 Score: 176
Period size: 42 Copynumber: 4.6 Consensus size: 42
47172638 GCCCGAAGGC
* *
47172648 TGAACAGAAGCTCATGAGAGCTAAACAGAAACCCATAAGGGT
1 TGAACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGAGT
* * * *
47172690 TGAACAGGAGCTCGTAAGAGCTAAAC-GAAAACTCATATGAGT
1 TGAACAGAAGCTCATAAGAGCTAAACAG-AAACCCATAAGAGT
* ** * *
47172732 TGAAACAGAAGCTCATAAGAGCTGAATGGAAACTCATAATAGT
1 TG-AACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGAGT
* * *
47172775 TGAACAGAAGCTCA-ATAGAGCTGAACAAAAACCCATATGAGT
1 TGAACAGAAGCTCATA-AGAGCTAAACAGAAACCCATAAGAGT
** * * *
47172817 CAAATAGAAGCTCGTGAGAGCTAAA
1 TGAACAGAAGCTCATAAGAGCTAAA
47172842 TGGAAAGTAA
Statistics
Matches: 123, Mismatches: 24, Indels: 10
0.78 0.15 0.06
Matches are distributed among these distances:
41 2 0.02
42 86 0.70
43 34 0.28
44 1 0.01
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.18
Consensus pattern (42 bp):
TGAACAGAAGCTCATAAGAGCTAAACAGAAACCCATAAGAGT
Found at i:47172795 original size:85 final size:84
Alignment explanation
Indices: 47172650--47172847 Score: 236
Period size: 85 Copynumber: 2.3 Consensus size: 84
47172640 CCGAAGGCTG
** * * *
47172650 AACAGAAGCTCATGAGAGCTAAACAGAAACCCATAAGGGTTGAACAGGAGCTCGTAAGAGCTAAA
1 AACAGAAGCTCATGAGAGCTAAATGGAAACCCATAAGAGTTGAACAGAAGCTCATAAGAGCTAAA
* * *
47172715 CGAAAACTCATATGAGTTGA
66 CAAAAACCCATATGAG-TCA
* * * * *
47172735 AACAGAAGCTCATAAGAGCTGAATGGAAACTCATAATAGTTGAACAGAAGCTCA-ATAGAGCTGA
1 AACAGAAGCTCATGAGAGCTAAATGGAAACCCATAAGAGTTGAACAGAAGCTCATA-AGAGCTAA
47172799 ACAAAAACCCATATGAGTCA
65 ACAAAAACCCATATGAGTCA
* *
47172819 AATAGAAGCTCGTGAGAGCTAAATGGAAA
1 AACAGAAGCTCATGAGAGCTAAATGGAAA
47172848 GTAAACACGA
Statistics
Matches: 95, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
84 28 0.29
85 67 0.71
ACGTcount: A:0.44, C:0.17, G:0.22, T:0.17
Consensus pattern (84 bp):
AACAGAAGCTCATGAGAGCTAAATGGAAACCCATAAGAGTTGAACAGAAGCTCATAAGAGCTAAA
CAAAAACCCATATGAGTCA
Found at i:47176763 original size:15 final size:15
Alignment explanation
Indices: 47176745--47176800 Score: 58
Period size: 15 Copynumber: 3.6 Consensus size: 15
47176735 ACAACAACTT
47176745 TTTTTTAAACACGAA
1 TTTTTTAAACACGAA
* *
47176760 TTTTTAAAATACAAGAA
1 TTTTT-TAA-ACACGAA
**
47176777 TTTTAGAAACACGAA
1 TTTTTTAAACACGAA
47176792 TTTTTTAAA
1 TTTTTTAAA
47176801 AAAAACACGA
Statistics
Matches: 32, Mismatches: 7, Indels: 4
0.74 0.16 0.09
Matches are distributed among these distances:
15 18 0.56
16 4 0.12
17 10 0.31
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.39
Consensus pattern (15 bp):
TTTTTTAAACACGAA
Found at i:47176777 original size:17 final size:16
Alignment explanation
Indices: 47176751--47176802 Score: 52
Period size: 17 Copynumber: 3.2 Consensus size: 16
47176741 ACTTTTTTTT
*
47176751 AAACACGAATTTTTAA
1 AAACAAGAATTTTTAA
*
47176767 AATACAAGAA-TTTTAG
1 AA-ACAAGAATTTTTAA
*
47176783 AAACACGAATTTTTTAA
1 AAACAAGAA-TTTTTAA
47176800 AAA
1 AAA
47176803 AAACACGAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
15 6 0.21
16 9 0.31
17 14 0.48
ACGTcount: A:0.52, C:0.10, G:0.08, T:0.31
Consensus pattern (16 bp):
AAACAAGAATTTTTAA
Done.