Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 160 of 173
Found at i:48045092 original size:18 final size:18
Alignment explanation
Indices: 48045069--48045118 Score: 75
Period size: 18 Copynumber: 2.8 Consensus size: 18
48045059 TCTTTCTTTA
48045069 TCTTTTCTTTCTTTTTCT
1 TCTTTTCTTTCTTTTTCT
48045087 TCTTTTCTTTCTTCTTTCT
1 TCTTTTCTTTCTT-TTTCT
*
48045106 TTTTTTC-TTCTTT
1 TCTTTTCTTTCTTT
48045119 CTTCCTCCTC
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
17 1 0.03
18 18 0.60
19 11 0.37
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (18 bp):
TCTTTTCTTTCTTTTTCT
Found at i:48045117 original size:15 final size:15
Alignment explanation
Indices: 48045072--48045121 Score: 68
Period size: 15 Copynumber: 3.4 Consensus size: 15
48045062 TTCTTTATCT
*
48045072 TTTCTTTCTTT-TTC
1 TTTCTTTTTTTCTTC
48045086 -TTCTTTTCTTTCTTC
1 TTTCTTTT-TTTCTTC
48045101 TTTCTTTTTTTCTTC
1 TTTCTTTTTTTCTTC
48045116 TTTCTT
1 TTTCTT
48045122 CCTCCTCCTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
13 6 0.19
14 3 0.09
15 16 0.50
16 7 0.22
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (15 bp):
TTTCTTTTTTTCTTC
Found at i:48046566 original size:6 final size:6
Alignment explanation
Indices: 48046556--48046608 Score: 79
Period size: 6 Copynumber: 8.8 Consensus size: 6
48046546 TTCTCACTCA
* * *
48046556 TAATAA TAATAC TAATAA TAATAC TAATAC TAATAC TAATAC TAATAT
1 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
48046604 TAATA
1 TAATA
48046609 GTTACCTCAC
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 43 1.00
ACGTcount: A:0.55, C:0.09, G:0.00, T:0.36
Consensus pattern (6 bp):
TAATAC
Found at i:48047326 original size:17 final size:17
Alignment explanation
Indices: 48047306--48047340 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
48047296 TTTCCTATTC
*
48047306 TGTTTATTTTCTTCTTT
1 TGTTTATTTTATTCTTT
*
48047323 TGTTTCTTTTATTCTTT
1 TGTTTATTTTATTCTTT
48047340 T
1 T
48047341 AAATTATGTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.06, C:0.11, G:0.06, T:0.77
Consensus pattern (17 bp):
TGTTTATTTTATTCTTT
Found at i:48047389 original size:16 final size:17
Alignment explanation
Indices: 48047361--48047392 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
48047351 TTGTTTATTA
48047361 TTTAATAAATATAATAC
1 TTTAATAAATATAATAC
48047378 TTTAAT-AATATAATA
1 TTTAATAAATATAATA
48047393 TAATATAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (17 bp):
TTTAATAAATATAATAC
Found at i:48047413 original size:25 final size:25
Alignment explanation
Indices: 48047357--48047418 Score: 72
Period size: 25 Copynumber: 2.5 Consensus size: 25
48047347 TGTTTTGTTT
*
48047357 ATTATTTAATAAATATAATACTTTA
1 ATTATATAATAAATATAATACTTTA
* *
48047382 ATAATATAATATAATATAATA-TTTT
1 ATTATATAATA-AATATAATACTTTA
*
48047407 CTTATATAATAA
1 ATTATATAATAA
48047419 GCAATTACAA
Statistics
Matches: 31, Mismatches: 5, Indels: 3
0.79 0.13 0.08
Matches are distributed among these distances:
24 1 0.03
25 21 0.68
26 9 0.29
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (25 bp):
ATTATATAATAAATATAATACTTTA
Found at i:48047574 original size:14 final size:14
Alignment explanation
Indices: 48047515--48047565 Score: 57
Period size: 14 Copynumber: 3.4 Consensus size: 14
48047505 ATTTTATAAT
48047515 ATAATAATAATTATA
1 ATAATAATAATT-TA
* *
48047530 ATGATTTAACAATTTA
1 AT-A-ATAATAATTTA
48047546 ATAATAATAATTTA
1 ATAATAATAATTTA
48047560 ATAATA
1 ATAATA
48047566 TTTTTTTAAC
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
14 15 0.50
15 3 0.10
16 5 0.17
17 7 0.23
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (14 bp):
ATAATAATAATTTA
Found at i:48048092 original size:17 final size:19
Alignment explanation
Indices: 48048067--48048105 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 19
48048057 AACCTTGTAG
*
48048067 AAAGGAGAT-AAAAAA-AA
1 AAAGCAGATCAAAAAAGAA
48048084 AAAGCAGATCAAAAAAGAA
1 AAAGCAGATCAAAAAAGAA
48048103 AAA
1 AAA
48048106 TTGAAAAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 8 0.42
18 6 0.32
19 5 0.26
ACGTcount: A:0.74, C:0.05, G:0.15, T:0.05
Consensus pattern (19 bp):
AAAGCAGATCAAAAAAGAA
Found at i:48049043 original size:17 final size:17
Alignment explanation
Indices: 48049021--48049053 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
48049011 TATTTAATTC
48049021 TTTTAATAT-ATTATATA
1 TTTTAA-ATCATTATATA
48049038 TTTTAAATCATTATAT
1 TTTTAAATCATTATAT
48049054 GTATAAACTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTTAAATCATTATATA
Found at i:48061528 original size:44 final size:43
Alignment explanation
Indices: 48061422--48061897 Score: 269
Period size: 44 Copynumber: 10.9 Consensus size: 43
48061412 AATATTAGAG
* *
48061422 ATCTTATCTCCCTG-AGATTACAGTGGAGCAGATCGTA--TCAA
1 ATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGCACAA
* * *
48061463 GTCTTATCTCCCTG-AGATTACAGAGGAGCAGATCGGAGCCACAA
1 ATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAG-CACAA
* * * * **
48061507 ACCTTATCTCCCTGAAGTTACAGTGGGGCAGGTTGAATATACAA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAA-GCACAA
* * * * *
48061551 GTCTTATCTCCCT-AAGGTTACAGTGGAGTAGACCGAAGAATTTCAG
1 ATCTTATCTCCCTGAA-GTTACAGTGGAGCAGATCGAAGCA---CAA
* * *
48061597 ATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAG-CACAA
* * *
48061641 ATCTTATCTGCCTG-AGTTTACAGCGGAGCAGATCGAAG-ACACT
1 ATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAGCACA-A
* ** **
48061684 ATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATA-AA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGCACAA
* * * * *
48061726 TGATCTTATCTCTCTGAATTTACAGTAGAGTAGATC---GCATCAG
1 --ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGCA-CAA
* * * * *
48061769 GTCTTATCTCCCTGATA-TTAACAATGGAGCAGACCGAAGGATTTCAG
1 ATCTTATCTCCCTGA-AGTT-ACAGTGGAGCAGATCGAAGCA---CAA
* * ** *
48061816 ATCTTATCTCCCTTAGGTTACAGTGGAATAGATTGAAGC-CAGA
1 ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGCACA-A
*
48061859 GATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCGAAG
1 -ATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCGAAG
48061898 ACACTATCCT
Statistics
Matches: 329, Mismatches: 76, Indels: 57
0.71 0.16 0.12
Matches are distributed among these distances:
41 50 0.15
42 16 0.05
43 36 0.11
44 155 0.47
45 4 0.01
46 47 0.14
47 21 0.06
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (43 bp):
ATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCGAAGCACAA
Found at i:48061646 original size:90 final size:84
Alignment explanation
Indices: 48061420--48061801 Score: 290
Period size: 90 Copynumber: 4.4 Consensus size: 84
48061410 TGAATATTAG
* * *
48061420 AGATCTTATCTCCCTG-AGATTACAGTGGAGCAGATCGTATC-AAGTCTTATCTCCCTGAGATTA
1 AGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTGAAACAAAGTCTTATCTCCCTGAGATTA
*
48061483 CAGAGGAGCAGATCGGAGCCAC
65 CAGAGGAGCAGATCGAAG--AC
* * * * * * *
48061505 AAACCTTATCTCCCTGAAGTTACAGTGGGGCAGGTTGAATATACAAGTCTTATCTCCCTAAGGTT
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAA-ACA-AAGTCTTATCTCCCTGAGATT
* * *
48061570 ACAGTGGAGTAGACCGAAGAATTTC
64 ACAGAGGAGCAGATCGAAG-A---C
* * * * *
48061595 AGATCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAAATCTTATCTGCCTGAGTTT
1 AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAA-ACA-AAGTCTTATCTCCCTGAGATT
*
48061660 ACAGCGGAGCAGATCGAAGAC
64 ACAGAGGAGCAGATCGAAGAC
* * * * *
48061681 ACTATCCTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAAATGATCTTATCTCTCTGA-AT
1 A-GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAACAAA-G-TCTTATCTCCCTGAGA-
* * *
48061745 TTACAGTA-GAGTAGATCGCA-TC
62 TTACAG-AGGAGCAGATCGAAGAC
* *
48061767 AGGTCTTATCTCCCTGATA-TTAACAATGGAGCAGA
1 AGATCTTATCTCCCTGA-AGTT-ACAGTGGAGCAGA
48061802 CCGAAGGATT
Statistics
Matches: 234, Mismatches: 49, Indels: 27
0.75 0.16 0.09
Matches are distributed among these distances:
85 47 0.20
86 20 0.09
87 63 0.27
88 34 0.15
89 1 0.00
90 69 0.29
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (84 bp):
AGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAACAAAGTCTTATCTCCCTGAGATTAC
AGAGGAGCAGATCGAAGAC
Found at i:48061662 original size:134 final size:133
Alignment explanation
Indices: 48061464--48061711 Score: 320
Period size: 134 Copynumber: 1.9 Consensus size: 133
48061454 TCGTATCAAG
*
48061464 TCTTATCTCCCTGAGATTACAGAGGAGCAGATCGGAGCCACAAACCTTATCTCCCTGAAGTTACA
1 TCTTATCTCCCTGAGATTACAGAGGAGCAGATCGAAGCCACAAACCTTATCTCCCTGAAGTTACA
* * * * * * *
48061529 GTGGGGCAGGTTGAATATACAAGTCTTATCTCCCT-AAGGTTACAGTGGAGTAGACCGAAGAATT
66 GCGGAGCAGATCGAAGACACAA-TCCTATCTCCCTGAA-GTTACAGTGGAGTAGACCGAAGAATT
48061593 TCAGA
129 TCAGA
* * * * * *
48061598 TCTTATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAAATCTTATCTGCCTG-AGTTTAC
1 TCTTATCTCCCTGAGATTACAGAGGAGCAGATCGAAGCCACAAACCTTATCTCCCTGAAG-TTAC
*
48061662 AGCGGAGCAGATCGAAGACACTATCCTATCTCCCTGAAGTTACAGTGGAG
65 AGCGGAGCAGATCGAAGACACAATCCTATCTCCCTGAAGTTACAGTGGAG
48061712 CAGATTAAAA
Statistics
Matches: 97, Mismatches: 15, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
133 25 0.26
134 72 0.74
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.26
Consensus pattern (133 bp):
TCTTATCTCCCTGAGATTACAGAGGAGCAGATCGAAGCCACAAACCTTATCTCCCTGAAGTTACA
GCGGAGCAGATCGAAGACACAATCCTATCTCCCTGAAGTTACAGTGGAGTAGACCGAAGAATTTC
AGA
Found at i:48061761 original size:87 final size:87
Alignment explanation
Indices: 48061426--48061762 Score: 280
Period size: 87 Copynumber: 3.9 Consensus size: 87
48061416 TTAGAGATCT
*
48061426 TATCTCCCTG-AGATTACAGTGGAGCAGATCG--TAT-CAAGTCTTATCTCCCTGAGA-TTACAG
1 TATCTCCCTGAAG-TTACAGTGGAGCAGATTGAATATACAAGTCTTATCTCCCTGA-ATTTACAG
* * *
48061486 -AGGAGCAGATCGGAGCCACAAACC
64 TA-GAGCAGATCGAAGACACAATCC
* * *
48061510 TTATCTCCCTGAAGTTACAGTGGGGCAGGTTGAATATACAAGTCTTATCTCCCT-AAGGTTACAG
1 -TATCTCCCTGAAGTTACAGTGGAGCAGATTGAATATACAAGTCTTATCTCCCTGAA-TTTACAG
* * * *
48061574 TGGAGTAGACCGAAGA-ATTTCAGATCT
64 TAGAGCAGATCGAAGACA---CA-ATCC
* *** * * * * **
48061601 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGCCAGAAATCTTATCTGCCTGAGTTTACAGCG
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTGAATATACAAGTCTTATCTCCCTGAATTTACAGTA
*
48061666 GAGCAGATCGAAGACACTATCC
66 GAGCAGATCGAAGACACAATCC
* *
48061688 TATCTCCCTGAAGTTACAGTGGAGCAGATT-AAAATA-AATGATCTTATCTCTCTGAATTTACAG
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTGAATATACAA-G-TCTTATCTCCCTGAATTTACAG
*
48061751 TAGAGTAGATCG
64 TAGAGCAGATCG
48061763 CATCAGGTCT
Statistics
Matches: 200, Mismatches: 37, Indels: 28
0.75 0.14 0.11
Matches are distributed among these distances:
85 27 0.14
86 6 0.03
87 65 0.32
88 33 0.17
90 65 0.32
91 4 0.02
ACGTcount: A:0.30, C:0.21, G:0.22, T:0.27
Consensus pattern (87 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATTGAATATACAAGTCTTATCTCCCTGAATTTACAGTA
GAGCAGATCGAAGACACAATCC
Found at i:48063781 original size:17 final size:17
Alignment explanation
Indices: 48063759--48063791 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
48063749 TATTTAATTC
48063759 TTTTAATAT-ATTATATA
1 TTTTAA-ATCATTATATA
48063776 TTTTAAATCATTATAT
1 TTTTAAATCATTATAT
48063792 GTATAAACTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 2 0.13
17 13 0.87
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (17 bp):
TTTTAAATCATTATATA
Found at i:48070371 original size:14 final size:14
Alignment explanation
Indices: 48070352--48070388 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
48070342 TTGCTTTTTT
*
48070352 TTGTTTTTTTGCTG
1 TTGTTTTTTTGCTC
48070366 TTG-TTTTTTGCTC
1 TTGTTTTTTTGCTC
48070379 TT-TTTTTTTG
1 TTGTTTTTTTG
48070389 GTTCTCCCCT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
13 18 0.86
14 3 0.14
ACGTcount: A:0.00, C:0.08, G:0.16, T:0.76
Consensus pattern (14 bp):
TTGTTTTTTTGCTC
Found at i:48070683 original size:30 final size:28
Alignment explanation
Indices: 48070639--48070741 Score: 107
Period size: 30 Copynumber: 3.4 Consensus size: 28
48070629 GGTCAATCTA
48070639 TAATTTTAAGAAAGTTTAGGGTTTAAAAATG
1 TAATTTTAA-AAAGTTTAGGG-TT-AAAATG
* * * *
48070670 AAATTTTGAAAAGTTGAGGGGGTCAAAATG
1 TAATTTTAAAAAGTTTA--GGGTTAAAATG
48070700 TAATTTTAGAAAAGTTTAGAGGTTAAAATG
1 TAATTTTA-AAAAGTTTAG-GGTTAAAATG
48070730 TAATTTTAAAAA
1 TAATTTTAAAAA
48070742 AATAAAATTT
Statistics
Matches: 60, Mismatches: 8, Indels: 10
0.77 0.10 0.13
Matches are distributed among these distances:
29 5 0.08
30 36 0.60
31 16 0.27
32 3 0.05
ACGTcount: A:0.44, C:0.01, G:0.20, T:0.35
Consensus pattern (28 bp):
TAATTTTAAAAAGTTTAGGGTTAAAATG
Found at i:48070684 original size:60 final size:60
Alignment explanation
Indices: 48070605--48070741 Score: 147
Period size: 61 Copynumber: 2.3 Consensus size: 60
48070595 TTTAGGTGTC
* * **
48070605 AAATGAAAATTTTG-GAAGTTTA-GGGGTCAATCTATAATTTTA-AGAAAGTTTAG-GGTTTAA
1 AAATG-AAATTTTGAAAAGTTGAGGGGGTCAAAATATAATTTTAGA-AAAGTTTAGAGG-TT-A
*
48070665 AAATGAAATTTTGAAAAGTTGAGGGGGTCAAAATGTAATTTTAGAAAAGTTTAGAGGTTA
1 AAATGAAATTTTGAAAAGTTGAGGGGGTCAAAATATAATTTTAGAAAAGTTTAGAGGTTA
* *
48070725 AAATGTAATTTTAAAAA
1 AAATGAAATTTTGAAAA
48070742 AATAAAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
59 8 0.12
60 27 0.41
61 28 0.42
62 3 0.05
ACGTcount: A:0.42, C:0.02, G:0.21, T:0.34
Consensus pattern (60 bp):
AAATGAAATTTTGAAAAGTTGAGGGGGTCAAAATATAATTTTAGAAAAGTTTAGAGGTTA
Found at i:48070716 original size:61 final size:59
Alignment explanation
Indices: 48070605--48070741 Score: 145
Period size: 60 Copynumber: 2.3 Consensus size: 59
48070595 TTTAGGTGTC
* * **
48070605 AAATGAAAATTTTG-GAAGTTTAGGGGTCAATCTATAATTTTAAGAAAGTTTAG-GGTTTAA
1 AAATG-AAATTTTGAAAAGTTGAGGGGTCAAAATATAATTTTAAGAAAGTTTAGAGG-TT-A
*
48070665 AAATGAAATTTTGAAAAGTTGAGGGGGTCAAAATGTAATTTT-AGAAAAGTTTAGAGGTTA
1 AAATGAAATTTTGAAAAGTTGA-GGGGTCAAAATATAATTTTAAG-AAAGTTTAGAGGTTA
* *
48070725 AAATGTAATTTTAAAAA
1 AAATGAAATTTTGAAAA
48070742 AATAAAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
59 8 0.12
60 29 0.44
61 27 0.41
62 2 0.03
ACGTcount: A:0.42, C:0.02, G:0.21, T:0.34
Consensus pattern (59 bp):
AAATGAAATTTTGAAAAGTTGAGGGGTCAAAATATAATTTTAAGAAAGTTTAGAGGTTA
Found at i:48074473 original size:18 final size:18
Alignment explanation
Indices: 48074446--48074498 Score: 70
Period size: 18 Copynumber: 2.9 Consensus size: 18
48074436 TGCATGCATC
* *
48074446 ATGCATGCTCTTTGTTTG
1 ATGCATGCTCCTTGTTTA
* *
48074464 ATGCACGCTCCGTGTTTA
1 ATGCATGCTCCTTGTTTA
48074482 ATGCATGCTCCTTGTTT
1 ATGCATGCTCCTTGTTT
48074499 CTTACAATTA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.13, C:0.23, G:0.21, T:0.43
Consensus pattern (18 bp):
ATGCATGCTCCTTGTTTA
Found at i:48075832 original size:3 final size:3
Alignment explanation
Indices: 48075824--48075853 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
48075814 GAGGTTTAGG
48075824 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
48075854 AGGATAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:48079168 original size:16 final size:16
Alignment explanation
Indices: 48079137--48079175 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
48079127 TGTTGTTTAG
*
48079137 TAGAATAACTCATGTT
1 TAGAACAACTCATGTT
* *
48079153 TGGAACAACTCGTGTT
1 TAGAACAACTCATGTT
48079169 TAGAACA
1 TAGAACA
48079176 CTCTTTGTCA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (16 bp):
TAGAACAACTCATGTT
Found at i:48089822 original size:19 final size:21
Alignment explanation
Indices: 48089798--48089838 Score: 59
Period size: 19 Copynumber: 2.0 Consensus size: 21
48089788 AGAGAACACG
48089798 CACATGC-ACAACAT-GAAAA
1 CACATGCAACAACATAGAAAA
*
48089817 CACATGCAACCACATAGAAAA
1 CACATGCAACAACATAGAAAA
48089838 C
1 C
48089839 CTTTCCATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 7 0.37
20 6 0.32
21 6 0.32
ACGTcount: A:0.51, C:0.29, G:0.10, T:0.10
Consensus pattern (21 bp):
CACATGCAACAACATAGAAAA
Found at i:48095211 original size:23 final size:23
Alignment explanation
Indices: 48095167--48095211 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
48095157 TTTTAAAAAA
* *
48095167 ATATGTTTTTTAATTGATATTTT
1 ATATATTTTTTAATTGAAATTTT
48095190 ATATATTTTTATAATT-AAATTT
1 ATATATTTTT-TAATTGAAATTT
48095212 ACATAATAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 14 0.74
24 5 0.26
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.62
Consensus pattern (23 bp):
ATATATTTTTTAATTGAAATTTT
Found at i:48096600 original size:11 final size:11
Alignment explanation
Indices: 48096584--48096638 Score: 57
Period size: 11 Copynumber: 5.4 Consensus size: 11
48096574 ATAATTATAC
48096584 AAAATTATTTA
1 AAAATTATTTA
48096595 AAAATTA--TA
1 AAAATTATTTA
48096604 AAAA-TATATT-
1 AAAATTAT-TTA
*
48096614 AACATTATTTA
1 AAAATTATTTA
48096625 AAAATTA-TTA
1 AAAATTATTTA
48096635 AAAA
1 AAAA
48096639 GAATATATAT
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
8 2 0.05
9 6 0.16
10 12 0.32
11 17 0.46
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAATTATTTA
Found at i:48096600 original size:21 final size:21
Alignment explanation
Indices: 48096570--48096613 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
48096560 CCGCTGGTTT
*
48096570 TTTAATAATTATACAAAAT-TA
1 TTTAAAAATTATA-AAAATATA
48096591 TTTAAAAATTATAAAAATATA
1 TTTAAAAATTATAAAAATATA
48096612 TT
1 TT
48096614 AACATTATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 5 0.24
21 16 0.76
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (21 bp):
TTTAAAAATTATAAAAATATA
Found at i:48096812 original size:20 final size:20
Alignment explanation
Indices: 48096787--48096828 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
48096777 TATCTATTTG
*
48096787 AATTAT-AAGAAATTGTAAAA
1 AATTATCAAG-AATTATAAAA
48096807 AATTATCAAGAATTATAAAA
1 AATTATCAAGAATTATAAAA
48096827 AA
1 AA
48096829 AAAGTAAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 17 0.85
21 3 0.15
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (20 bp):
AATTATCAAGAATTATAAAA
Found at i:48098690 original size:25 final size:23
Alignment explanation
Indices: 48098654--48098704 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 23
48098644 TGGAAAAGAA
*
48098654 AAAAGACAAAAA-AAAAGAAAGTT
1 AAAAGACAAAAAGAAAA-AAAATT
48098677 AAAAGAGCATAAAAGAAAAAAAATT
1 AAAAGA-CA-AAAAGAAAAAAAATT
48098702 AAA
1 AAA
48098705 TTGCTCAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
23 6 0.25
24 2 0.08
25 12 0.50
26 4 0.17
ACGTcount: A:0.75, C:0.04, G:0.12, T:0.10
Consensus pattern (23 bp):
AAAAGACAAAAAGAAAAAAAATT
Found at i:48103076 original size:13 final size:13
Alignment explanation
Indices: 48103058--48103136 Score: 68
Period size: 13 Copynumber: 5.6 Consensus size: 13
48103048 AAGTAATCGT
48103058 AAATGGGAATGGG
1 AAATGGGAATGGG
*
48103071 AAATGGGAATGAG
1 AAATGGGAATGGG
*
48103084 AAATGGGAGGAGGGG
1 AAATGGGA--ATGGG
* *
48103099 AATCGATGGAAGAGGGG
1 AA---ATGGGA-ATGGG
48103116 AAATGGGAATGGG
1 AAATGGGAATGGG
48103129 AAATGGGA
1 AAATGGGA
48103137 GGAGGGCACG
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
13 32 0.58
14 5 0.09
15 5 0.09
17 8 0.15
18 5 0.09
ACGTcount: A:0.39, C:0.01, G:0.47, T:0.13
Consensus pattern (13 bp):
AAATGGGAATGGG
Found at i:48103166 original size:43 final size:43
Alignment explanation
Indices: 48103068--48103246 Score: 313
Period size: 43 Copynumber: 4.1 Consensus size: 43
48103058 AAATGGGAAT
* * *
48103068 GGGAAATGGGAATGAGAAATGGGAGGAGGGGAATCGATGGAAGAG
1 GGGAAATGGGAATGGGAAATGGGAGGA-GGGCA-CGGTGGAAGAG
48103113 GGGAAATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAAGAG
1 GGGAAATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAAGAG
48103156 GGGAAATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAAGAG
1 GGGAAATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAAGAG
48103199 GGGAAATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAAGAG
1 GGGAAATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAAGAG
48103242 GGGAA
1 GGGAA
48103247 TCGATGGAAA
Statistics
Matches: 131, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
43 101 0.77
44 4 0.03
45 26 0.20
ACGTcount: A:0.34, C:0.04, G:0.53, T:0.09
Consensus pattern (43 bp):
GGGAAATGGGAATGGGAAATGGGAGGAGGGCACGGTGGAAGAG
Found at i:48103404 original size:29 final size:29
Alignment explanation
Indices: 48103292--48103533 Score: 421
Period size: 29 Copynumber: 8.2 Consensus size: 29
48103282 CATTGTATTT
48103292 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAAT-AAAAAATATATGTA
*
48103322 ATGTATTTTAAAAATAAAGAAATATATGTA
1 GTGTATTTTAAAAATAAA-AAATATATGTA
48103352 GTGTATTTTAAAAATAAAAAAATATATGTA
1 GTGTATTTTAAAAAT-AAAAAATATATGTA
48103382 GTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
*
48103411 GTGTATTTTAAAAATAAAAAATATATTTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
48103440 GTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
*
48103469 CTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
48103498 GTGTATTTTAAAAATAAAAAATATATGTA
1 GTGTATTTTAAAAATAAAAAATATATGTA
*
48103527 CTGTATT
1 GTGTATT
48103534 CGGTTTATTC
Statistics
Matches: 203, Mismatches: 7, Indels: 5
0.94 0.03 0.02
Matches are distributed among these distances:
29 135 0.67
30 65 0.32
31 3 0.01
ACGTcount: A:0.51, C:0.01, G:0.10, T:0.38
Consensus pattern (29 bp):
GTGTATTTTAAAAATAAAAAATATATGTA
Found at i:48104438 original size:21 final size:21
Alignment explanation
Indices: 48104414--48104463 Score: 82
Period size: 21 Copynumber: 2.4 Consensus size: 21
48104404 CATTGTTTCT
*
48104414 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
*
48104435 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
48104456 AATCTCAC
1 AATCTCAC
48104464 TGCCACCGCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.32, C:0.38, G:0.08, T:0.22
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:48109271 original size:11 final size:11
Alignment explanation
Indices: 48109255--48109343 Score: 73
Period size: 11 Copynumber: 8.4 Consensus size: 11
48109245 ATTTTTTTAA
48109255 TTTTAAAATAT
1 TTTTAAAATAT
48109266 TTTTAAAATACT
1 TTTTAAAATA-T
*
48109278 TTTT----TAA
1 TTTTAAAATAT
48109285 TTTTAAAATAT
1 TTTTAAAATAT
48109296 TTTTAAAATACT
1 TTTTAAAATA-T
** *
48109308 TTTT--TTTAA
1 TTTTAAAATAT
48109317 TTTTAAAATAT
1 TTTTAAAATAT
48109328 TTTTAAAATACT
1 TTTTAAAATA-T
48109340 TTTT
1 TTTT
48109344 TTAATTTTTA
Statistics
Matches: 61, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
7 4 0.07
8 2 0.03
9 4 0.07
10 2 0.03
11 34 0.56
12 15 0.25
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:48109287 original size:20 final size:18
Alignment explanation
Indices: 48109266--48109331 Score: 61
Period size: 19 Copynumber: 3.8 Consensus size: 18
48109256 TTTAAAATAT
48109266 TTTTAAAATACTTTTTTAA
1 TTTTAAAATA-TTTTTTAA
48109285 TTTTAAAATA-TTTTTAA
1 TTTTAAAATATTTTTTAA
* *
48109302 ----AATACTTTTTTTTAA
1 TTTTAA-AATATTTTTTAA
48109317 TTTTAAAATATTTTT
1 TTTTAAAATATTTTT
48109332 AAAATACTTT
Statistics
Matches: 37, Mismatches: 4, Indels: 13
0.69 0.07 0.24
Matches are distributed among these distances:
13 2 0.05
14 2 0.05
15 7 0.19
17 7 0.19
18 7 0.19
19 12 0.32
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.61
Consensus pattern (18 bp):
TTTTAAAATATTTTTTAA
Found at i:48109313 original size:32 final size:31
Alignment explanation
Indices: 48109241--48109358 Score: 204
Period size: 32 Copynumber: 3.8 Consensus size: 31
48109231 CCGATATAAT
48109241 AAATA-TTTTTTTAATTTTAAAATATTTTTA
1 AAATACTTTTTTTAATTTTAAAATATTTTTA
48109271 AAATAC-TTTTTTAATTTTAAAATATTTTTA
1 AAATACTTTTTTTAATTTTAAAATATTTTTA
48109301 AAATACTTTTTTTTAATTTTAAAATATTTTTA
1 AAATAC-TTTTTTTAATTTTAAAATATTTTTA
48109333 AAATACTTTTTTTAATTTTTAAAATA
1 AAATACTTTTTTTAA-TTTTAAAATA
48109359 AATTTTTGGT
Statistics
Matches: 84, Mismatches: 0, Indels: 6
0.93 0.00 0.07
Matches are distributed among these distances:
30 35 0.42
31 9 0.11
32 40 0.48
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.58
Consensus pattern (31 bp):
AAATACTTTTTTTAATTTTAAAATATTTTTA
Found at i:48109364 original size:21 final size:21
Alignment explanation
Indices: 48109326--48109365 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
48109316 ATTTTAAAAT
**
48109326 ATTTTTAAAATACTTTTTTTA
1 ATTTTTAAAATAAATTTTTTA
48109347 ATTTTTAAAATAAATTTTT
1 ATTTTTAAAATAAATTTTT
48109366 GGTATTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.60
Consensus pattern (21 bp):
ATTTTTAAAATAAATTTTTTA
Found at i:48109372 original size:22 final size:21
Alignment explanation
Indices: 48109325--48109383 Score: 59
Period size: 22 Copynumber: 2.8 Consensus size: 21
48109315 AATTTTAAAA
* *
48109325 TATTTTTAAAAT-ACTTTTTT
1 TATTTTTAAAATAAATTTTTG
48109345 TAATTTTTAAAATAAATTTTTGG
1 T-ATTTTTAAAATAAATTTTT-G
48109368 TATTTATTAAAA-AAAT
1 TATTT-TTAAAATAAAT
48109384 GGGCCGGGAC
Statistics
Matches: 33, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
20 1 0.03
21 11 0.33
22 14 0.42
23 7 0.21
ACGTcount: A:0.41, C:0.02, G:0.03, T:0.54
Consensus pattern (21 bp):
TATTTTTAAAATAAATTTTTG
Found at i:48109460 original size:18 final size:18
Alignment explanation
Indices: 48109430--48109464 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
48109420 TCCCGGGCCG
48109430 GGCCTGGGCAAAATTTTA
1 GGCCTGGGCAAAATTTTA
48109448 GGCC-GGGCTAAAATTTT
1 GGCCTGGGC-AAAATTTT
48109465 CTATGGGCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (18 bp):
GGCCTGGGCAAAATTTTA
Found at i:48110315 original size:22 final size:23
Alignment explanation
Indices: 48110272--48110315 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
48110262 TCTCTTTCAC
* *
48110272 TCTTCACTCTTCCCGCTTCCCCA
1 TCTTCACTCTTCCCCCTCCCCCA
48110295 TCTTCA-TCTTCCCCCTCCCCC
1 TCTTCACTCTTCCCCCTCCCCC
48110316 TCCCTTCTCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.07, C:0.57, G:0.02, T:0.34
Consensus pattern (23 bp):
TCTTCACTCTTCCCCCTCCCCCA
Found at i:48114444 original size:20 final size:19
Alignment explanation
Indices: 48114374--48114443 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 19
48114364 AAATATAAAA
48114374 TTTGAAATTTTTATAAA-TAT
1 TTTG-AATTTTTA-AAATTAT
*
48114394 TTTGAA-TGTTAAAATTTAT
1 TTTGAATTTTTAAAA-TTAT
48114413 TTTGAATTTTTGAAAATTAT
1 TTTGAATTTTT-AAAATTAT
48114433 TTTGAATTTTT
1 TTTGAATTTTT
48114444 GTTGAGAGAG
Statistics
Matches: 44, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
17 3 0.07
18 4 0.09
19 11 0.25
20 22 0.50
21 4 0.09
ACGTcount: A:0.34, C:0.00, G:0.09, T:0.57
Consensus pattern (19 bp):
TTTGAATTTTTAAAATTAT
Found at i:48127837 original size:30 final size:30
Alignment explanation
Indices: 48127803--48127862 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
48127793 CTTGTTCCTT
48127803 GAATATTGTTTTCATGGCTTGCTTATGTTG
1 GAATATTGTTTTCATGGCTTGCTTATGTTG
48127833 GAATATTGTTTTCATGGCTTGCTTATGTTG
1 GAATATTGTTTTCATGGCTTGCTTATGTTG
48127863 CACTGACTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.17, C:0.10, G:0.23, T:0.50
Consensus pattern (30 bp):
GAATATTGTTTTCATGGCTTGCTTATGTTG
Found at i:48134129 original size:17 final size:18
Alignment explanation
Indices: 48134093--48134130 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
48134083 TTTCTAATTC
*
48134093 AATAAAAATAATTTAGCA
1 AATAAAAATAATTTACCA
*
48134111 AATAAAAGTAA-TTACCA
1 AATAAAAATAATTTACCA
48134128 AAT
1 AAT
48134131 GTTTAAAAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.61, C:0.08, G:0.05, T:0.26
Consensus pattern (18 bp):
AATAAAAATAATTTACCA
Found at i:48145711 original size:25 final size:26
Alignment explanation
Indices: 48145679--48145733 Score: 71
Period size: 24 Copynumber: 2.2 Consensus size: 26
48145669 TTATTAAATT
*
48145679 ATATATTTTAATTATAA-TATATTTA
1 ATATATTTTAATAATAATTATATTTA
*
48145704 ATATA-TTTAATAATAATTATGTTTA
1 ATATATTTTAATAATAATTATATTTA
48145729 A-ATAT
1 ATATAT
48145734 GATTAAATTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
24 13 0.50
25 13 0.50
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (26 bp):
ATATATTTTAATAATAATTATATTTA
Found at i:48145958 original size:45 final size:44
Alignment explanation
Indices: 48145874--48145964 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
48145864 AGCTCTATCC
*
48145874 CATTCAACCAAACACAAGATTACTATTACGCCACTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCACTATTCCATTA
*** * *
48145918 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTATTCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCACTATTCCATTA
48145963 CA
1 CA
48145965 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.35, C:0.29, G:0.05, T:0.31
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCACTATTCCATTA
Found at i:48145994 original size:16 final size:16
Alignment explanation
Indices: 48145945--48145996 Score: 77
Period size: 16 Copynumber: 3.2 Consensus size: 16
48145935 GATTTGCTAT
* *
48145945 TACACCTCTATTCCAT
1 TACACCTCTAATCCAA
48145961 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
48145977 TACACCTCTAATCTAA
1 TACACCTCTAATCCAA
48145993 TACA
1 TACA
48145997 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.35, C:0.35, G:0.00, T:0.31
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:48146205 original size:27 final size:28
Alignment explanation
Indices: 48146170--48146240 Score: 74
Period size: 31 Copynumber: 2.5 Consensus size: 28
48146160 TAATTTTAAA
*
48146170 AATTTAGTGACTAAAT-A-AAAAATTACT
1 AATTAAGTGACTAAATAACAAAAATTA-T
*
48146197 AATTAAGTGATTAAAATAAAACAAAAATTAT
1 AATTAAGTGACT-AAAT--AACAAAAATTAT
48146228 AATTAAGTGACTA
1 AATTAAGTGACTA
48146241 TTTTTGTAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
27 10 0.28
28 4 0.11
30 1 0.03
31 13 0.36
32 8 0.22
ACGTcount: A:0.55, C:0.06, G:0.08, T:0.31
Consensus pattern (28 bp):
AATTAAGTGACTAAATAACAAAAATTAT
Found at i:48154527 original size:76 final size:74
Alignment explanation
Indices: 48154431--48154569 Score: 201
Period size: 76 Copynumber: 1.9 Consensus size: 74
48154421 TTCACAATTG
*
48154431 ATTTGGCCATACTGATAATTTTAAAGCAAGTAGGGTTCT-AAATAAAGAA-AAGCTTATTAACCC
1 ATTTGGCCATACTAATAATTTTAAAGCAAGTAGGGTT-TGAAA-AAAGAAGAAGCTTATT-ACCC
48154494 CTCAATCACCAA
63 CTCAATCACCAA
* *
48154506 ATTTGGGCCATACTAATAATTTTGAAGCATGTAGGGTTTGAAAAAAGAAGAAGCTTATTACCCC
1 ATTT-GGCCATACTAATAATTTTAAAGCAAGTAGGGTTTGAAAAAAGAAGAAGCTTATTACCCC
48154570 ATAAGCAGCA
Statistics
Matches: 58, Mismatches: 3, Indels: 6
0.87 0.04 0.09
Matches are distributed among these distances:
75 16 0.28
76 42 0.72
ACGTcount: A:0.38, C:0.17, G:0.17, T:0.29
Consensus pattern (74 bp):
ATTTGGCCATACTAATAATTTTAAAGCAAGTAGGGTTTGAAAAAAGAAGAAGCTTATTACCCCTC
AATCACCAA
Found at i:48162926 original size:24 final size:24
Alignment explanation
Indices: 48162899--48163006 Score: 94
Period size: 25 Copynumber: 4.5 Consensus size: 24
48162889 TCGCACGAGA
*
48162899 TTCCCGTTTATGGCT-TGTATGAGC
1 TTCCCGATTATGGCTCT-TATGAGC
* * *
48162923 TTCCTGATAATTGGCTCTCATGAGC
1 TTCCCGATTA-TGGCTCTTATGAGC
*
48162948 TTCCCGATTATGGCTCTTATGAGT
1 TTCCCGATTATGGCTCTTATGAGC
* * **
48162972 TTCCCGTTATATGACTCACATGAGC
1 TTCCCGAT-TATGGCTCTTATGAGC
48162997 TTCCC-ATTAT
1 TTCCCGATTAT
48163007 ATGACTCAAA
Statistics
Matches: 67, Mismatches: 14, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
23 3 0.04
24 27 0.40
25 36 0.54
26 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.39
Consensus pattern (24 bp):
TTCCCGATTATGGCTCTTATGAGC
Found at i:48162952 original size:49 final size:48
Alignment explanation
Indices: 48162883--48163006 Score: 126
Period size: 49 Copynumber: 2.6 Consensus size: 48
48162873 GCTTGTCGAT
* * * * *
48162883 ATTGGCTCGCACGAGATTCCCGTTTATGGCT-TGTATGAGCTTCCTGATA
1 ATTGGCTCACATGAGCTTCCCGATTATGGCTCT-TATGAGCTTCCCG-TA
* * *
48162932 ATTGGCTCTCATGAGCTTCCCGATTATGGCTCTTATGAGTTTCCCGTT
1 ATTGGCTCACATGAGCTTCCCGATTATGGCTCTTATGAGCTTCCCGTA
*
48162980 ATATGACTCACATGAGCTTCCC-ATTAT
1 AT-TGGCTCACATGAGCTTCCCGATTAT
48163007 ATGACTCAAA
Statistics
Matches: 64, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
48 8 0.12
49 55 0.86
50 1 0.02
ACGTcount: A:0.19, C:0.24, G:0.20, T:0.36
Consensus pattern (48 bp):
ATTGGCTCACATGAGCTTCCCGATTATGGCTCTTATGAGCTTCCCGTA
Found at i:48163000 original size:25 final size:25
Alignment explanation
Indices: 48162941--48163014 Score: 87
Period size: 25 Copynumber: 3.0 Consensus size: 25
48162931 AATTGGCTCT
* * *
48162941 CATGAGCTTCCCGAT-TATGGCTCT
1 CATGAGCTTCCCGTTATATGACTCA
* *
48162965 TATGAGTTTCCCGTTATATGACTCA
1 CATGAGCTTCCCGTTATATGACTCA
*
48162990 CATGAGCTTCCCATTATATGACTCA
1 CATGAGCTTCCCGTTATATGACTCA
48163015 AAAAAGCTTC
Statistics
Matches: 41, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
24 12 0.29
25 29 0.71
ACGTcount: A:0.23, C:0.26, G:0.16, T:0.35
Consensus pattern (25 bp):
CATGAGCTTCCCGTTATATGACTCA
Found at i:48163022 original size:25 final size:25
Alignment explanation
Indices: 48162972--48163025 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
48162962 TCTTATGAGT
* * **
48162972 TTCCCGTTATATGACTCACATGAGC
1 TTCCCATTATATGACTCAAAAAAGC
48162997 TTCCCATTATATGACTCAAAAAAGC
1 TTCCCATTATATGACTCAAAAAAGC
48163022 TTCC
1 TTCC
48163026 TATTTACATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.30, C:0.28, G:0.11, T:0.31
Consensus pattern (25 bp):
TTCCCATTATATGACTCAAAAAAGC
Found at i:48168259 original size:28 final size:28
Alignment explanation
Indices: 48168228--48168282 Score: 101
Period size: 28 Copynumber: 2.0 Consensus size: 28
48168218 ATCAAATGTC
*
48168228 AATTTCGTAATTCAATCATACAAAAGTT
1 AATTTCATAATTCAATCATACAAAAGTT
48168256 AATTTCATAATTCAATCATACAAAAGT
1 AATTTCATAATTCAATCATACAAAAGT
48168283 GAAGTGGCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.45, C:0.15, G:0.05, T:0.35
Consensus pattern (28 bp):
AATTTCATAATTCAATCATACAAAAGTT
Found at i:48193142 original size:25 final size:25
Alignment explanation
Indices: 48193059--48193218 Score: 174
Period size: 25 Copynumber: 6.6 Consensus size: 25
48193049 TTATTATGCA
* *
48193059 CTAATGAA-CAGAGAGCACTAAAGTG
1 CTAAT-AATCAGAGAGCACTGATGTG
*
48193084 CT-AT-A-CAGAGAGCACAGATGTG
1 CTAATAATCAGAGAGCACTGATGTG
* * *
48193106 C---TAATC-GAAGAGCATTAACGTG
1 CTAATAATCAG-AGAGCACTGATGTG
48193128 CTAATAATCAGAGAGCACTGATGTG
1 CTAATAATCAGAGAGCACTGATGTG
* *
48193153 CTAATAATTAGAGATCACTGATGTG
1 CTAATAATCAGAGAGCACTGATGTG
48193178 CTAATAATCAGAGAGCACTGATGTG
1 CTAATAATCAGAGAGCACTGATGTG
48193203 CTAATAATCAGAGAGC
1 CTAATAATCAGAGAGC
48193219 GCGCTAAAGT
Statistics
Matches: 114, Mismatches: 14, Indels: 14
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.01
21 2 0.02
22 28 0.25
24 2 0.02
25 80 0.70
26 1 0.01
ACGTcount: A:0.38, C:0.16, G:0.23, T:0.23
Consensus pattern (25 bp):
CTAATAATCAGAGAGCACTGATGTG
Found at i:48194594 original size:33 final size:33
Alignment explanation
Indices: 48194525--48194622 Score: 108
Period size: 33 Copynumber: 2.9 Consensus size: 33
48194515 CTATACCCAT
* * *
48194525 CTATGCCGAATGCATAGATACATACACTTATTTTCAC
1 CTATGCCGAATGCAT--ACACATA-A-ATATATTCAC
48194562 CTATGCCGAATGCATACACATAAATATATTCAC
1 CTATGCCGAATGCATACACATAAATATATTCAC
* *
48194595 CTATGCCGAATGCA-ACATATATATATAT
1 CTATGCCGAATGCATACACATAAATATAT
48194623 ACATATCTAT
Statistics
Matches: 56, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
32 12 0.21
33 22 0.39
34 1 0.02
35 6 0.11
37 15 0.27
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.31
Consensus pattern (33 bp):
CTATGCCGAATGCATACACATAAATATATTCAC
Found at i:48194882 original size:41 final size:41
Alignment explanation
Indices: 48194837--48195033 Score: 308
Period size: 41 Copynumber: 4.8 Consensus size: 41
48194827 ACCGGCTCTT
*
48194837 AGCCTGCTAGACTTATAGTCCGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
48194878 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
48194919 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
*
48194960 AGCCTGCTAGACTTATAGTCTGAATAAT-T-TCACCGGCGTTA
1 AGCCTGCTAGACTTATAGTCTG-A-AATGTGTCACCGGCATTA
* * * *
48195001 AGCCTGCTAGACGTAAAGTCTGAATTATGTCAC
1 AGCCTGCTAGACTTATAGTCTGAAATGTGTCAC
48195034 TAACGATAAA
Statistics
Matches: 147, Mismatches: 5, Indels: 8
0.92 0.03 0.05
Matches are distributed among these distances:
39 2 0.01
40 2 0.01
41 138 0.94
42 2 0.01
43 3 0.02
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATGTGTCACCGGCATTA
Found at i:48203181 original size:22 final size:22
Alignment explanation
Indices: 48203151--48203193 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
48203141 GTAATGAAAC
48203151 ACTTCCACTCTATGAACATGCG
1 ACTTCCACTCTATGAACATGCG
* *
48203173 ACTTTCACTCTATTAACATGC
1 ACTTCCACTCTATGAACATGC
48203194 CAATGACATC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.28, C:0.30, G:0.09, T:0.33
Consensus pattern (22 bp):
ACTTCCACTCTATGAACATGCG
Found at i:48204873 original size:45 final size:45
Alignment explanation
Indices: 48204809--48204901 Score: 159
Period size: 45 Copynumber: 2.1 Consensus size: 45
48204799 GTCCCTATAC
* *
48204809 TTTAATTTGATCAATTTCAATTTATGTACTTTTTGGATTGGTCAA
1 TTTAATTTGATCAATTTCAATTTATGTACTGTTTGAATTGGTCAA
*
48204854 TTTAATTTGATCAATTTCAATTTATGTACTGTTTGAATTTGTCAA
1 TTTAATTTGATCAATTTCAATTTATGTACTGTTTGAATTGGTCAA
48204899 TTT
1 TTT
48204902 TAGCCCTTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.27, C:0.09, G:0.12, T:0.53
Consensus pattern (45 bp):
TTTAATTTGATCAATTTCAATTTATGTACTGTTTGAATTGGTCAA
Found at i:48213302 original size:20 final size:20
Alignment explanation
Indices: 48213277--48213327 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
48213267 AATTTTATAT
*
48213277 AAAATATATTTTATTAAATA
1 AAAATATATTTTAATAAATA
48213297 AAAATA-ATATTTAATAAATA
1 AAAATATAT-TTTAATAAATA
* *
48213317 GAATTATATTT
1 AAAATATATTT
48213328 CTAAATTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
19 2 0.08
20 22 0.85
21 2 0.08
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (20 bp):
AAAATATATTTTAATAAATA
Found at i:48217979 original size:18 final size:18
Alignment explanation
Indices: 48217956--48217993 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
48217946 GCATAATTAA
48217956 ATCATTGTATCTATAGAT
1 ATCATTGTATCTATAGAT
48217974 ATCATTGTATCTATAGAT
1 ATCATTGTATCTATAGAT
48217992 AT
1 AT
48217994 GTGTTCTACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.34, C:0.11, G:0.11, T:0.45
Consensus pattern (18 bp):
ATCATTGTATCTATAGAT
Found at i:48220203 original size:20 final size:19
Alignment explanation
Indices: 48220180--48220250 Score: 81
Period size: 20 Copynumber: 3.6 Consensus size: 19
48220170 AAATTACAAA
48220180 AAAAATTCAAAATAATTTT
1 AAAAATTCAAAATAATTTT
*
48220199 CAAAAATTTAAAATAATTTT
1 -AAAAATTCAAAATAATTTT
* *
48220219 TAAAATTAAAAAT-ATTTAT
1 AAAAATTCAAAATAATTT-T
48220238 AAAAAATTCAAAA
1 -AAAAATTCAAAA
48220251 ATTTATATTT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
18 4 0.09
19 12 0.27
20 28 0.64
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAATTCAAAATAATTTT
Found at i:48220254 original size:19 final size:20
Alignment explanation
Indices: 48220179--48220257 Score: 67
Period size: 20 Copynumber: 4.0 Consensus size: 20
48220169 AAAATTACAA
*
48220179 AAAAAATTCAAAATAATTT-T
1 AAAAAATTAAAAAT-ATTTAT
* *
48220199 CAAAAATTTAAAATAATTT-T
1 AAAAAATTAAAAAT-ATTTAT
*
48220219 -TAAAATTAAAAATATTTAT
1 AAAAAATTAAAAATATTTAT
*
48220238 AAAAAATTCAAAA-ATTTAT
1 AAAAAATTAAAAATATTTAT
48220257 A
1 A
48220258 TTTTTTTAAA
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
18 4 0.08
19 19 0.37
20 28 0.55
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (20 bp):
AAAAAATTAAAAATATTTAT
Found at i:48225570 original size:58 final size:59
Alignment explanation
Indices: 48225508--48225620 Score: 149
Period size: 61 Copynumber: 1.9 Consensus size: 59
48225498 ATTAATTTAA
* *
48225508 TATTAAATTAATATAATACTTATC-AAGATAAATA-TTAGATTAAATTTAATATCAAATC
1 TATTAAACTAATAAAATACTTATCTAAGATAAATATTTA-ATTAAATTTAATATCAAATC
* *
48225566 TATTAAACTAATAAAATATTTATCTATAAGATAAATATTTAATTTAATTTAATAT
1 TATTAAACTAATAAAATACTTATC--TAAGATAAATATTTAATTAAATTTAATAT
48225621 TAAGATAATC
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
58 21 0.45
61 23 0.49
62 3 0.06
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (59 bp):
TATTAAACTAATAAAATACTTATCTAAGATAAATATTTAATTAAATTTAATATCAAATC
Found at i:48237723 original size:14 final size:15
Alignment explanation
Indices: 48237704--48237733 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
48237694 TATTTTGAAA
48237704 TGGATTGGT-TCGGT
1 TGGATTGGTCTCGGT
48237718 TGGATTGGTCTCGGT
1 TGGATTGGTCTCGGT
48237733 T
1 T
48237734 TTAAAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.07, C:0.10, G:0.40, T:0.43
Consensus pattern (15 bp):
TGGATTGGTCTCGGT
Found at i:48244782 original size:5 final size:5
Alignment explanation
Indices: 48244772--48244800 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
48244762 ACACCTTGCT
48244772 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTT
48244801 TTGTCATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (5 bp):
TTTTC
Found at i:48247219 original size:42 final size:42
Alignment explanation
Indices: 48247160--48247241 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
48247150 CAAGCAAACA
48247160 CACATAACATGCAAAAGAAAAGACGACCCTTGGACTAAATCG
1 CACATAACATGCAAAAGAAAAGACGACCCTTGGACTAAATCG
48247202 CACATAACATGCAAAAGAAAAGACGACCCTTGGACTAAAT
1 CACATAACATGCAAAAGAAAAGACGACCCTTGGACTAAAT
48247242 TAGGCAATTA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.46, C:0.23, G:0.16, T:0.15
Consensus pattern (42 bp):
CACATAACATGCAAAAGAAAAGACGACCCTTGGACTAAATCG
Found at i:48247798 original size:19 final size:16
Alignment explanation
Indices: 48247770--48247808 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 16
48247760 GACACCTCAC
48247770 TTTTTCTTTTCTTTTATT
1 TTTTTCTTTT-TTTT-TT
48247788 TTTTGTCTTTTTTTTTT
1 TTTT-TCTTTTTTTTTT
48247805 TTTT
1 TTTT
48247809 ACATTATCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
17 6 0.30
18 8 0.40
19 6 0.30
ACGTcount: A:0.03, C:0.08, G:0.03, T:0.87
Consensus pattern (16 bp):
TTTTTCTTTTTTTTTT
Found at i:48248855 original size:19 final size:17
Alignment explanation
Indices: 48248820--48248855 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 17
48248810 TAATTTTATA
48248820 TTAAAAATATAAATATT
1 TTAAAAATATAAATATT
48248837 TTAATAAATATATAATATT
1 TTAA-AAATATA-AATATT
48248856 AACAAATCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 4 0.24
18 7 0.41
19 6 0.35
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAAAAATATAAATATT
Found at i:48257887 original size:23 final size:23
Alignment explanation
Indices: 48257844--48257887 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
48257834 GTTTATTTAT
* *
48257844 TGTTTGTTTATTATTTATGAACA
1 TGTTTGTTTAATATTCATGAACA
*
48257867 TGTTTGTTTAATATTCGTGAA
1 TGTTTGTTTAATATTCATGAA
48257888 TTATGAACAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.25, C:0.05, G:0.16, T:0.55
Consensus pattern (23 bp):
TGTTTGTTTAATATTCATGAACA
Found at i:48260524 original size:13 final size:13
Alignment explanation
Indices: 48260506--48260533 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
48260496 ATGTTTTTCC
48260506 CATGAACTATAAA
1 CATGAACTATAAA
48260519 CATGAACTATAAA
1 CATGAACTATAAA
48260532 CA
1 CA
48260534 AAATAATAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.54, C:0.18, G:0.07, T:0.21
Consensus pattern (13 bp):
CATGAACTATAAA
Found at i:48275824 original size:65 final size:65
Alignment explanation
Indices: 48275749--48275881 Score: 189
Period size: 65 Copynumber: 2.0 Consensus size: 65
48275739 AAATACGGAC
* * * *
48275749 TTACTTATAATATAGCGACCTTGGATA-TAGTTTA-TCTTTAATATTACTATTATAGCACAACTA
1 TTACTAATAATATAGCAACCTT-GAAAGTAGTTTACT-TTTAATATTACTATTATAACACAACTA
48275812 GA
64 GA
*
48275814 TTACTAATAATATAGCAACCTTGAAAGTAGTTTACTTTTAATATTATTATTATAACACAACTAGA
1 TTACTAATAATATAGCAACCTTGAAAGTAGTTTACTTTTAATATTACTATTATAACACAACTAGA
48275879 TTA
1 TTA
48275882 ATATTTGAAA
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
64 3 0.05
65 57 0.93
66 1 0.02
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (65 bp):
TTACTAATAATATAGCAACCTTGAAAGTAGTTTACTTTTAATATTACTATTATAACACAACTAGA
Found at i:48284263 original size:99 final size:99
Alignment explanation
Indices: 48284154--48284415 Score: 267
Period size: 99 Copynumber: 2.6 Consensus size: 99
48284144 GGCAACTCAA
* * * ** *
48284154 GAGCTTTGGGCAATTCTGGTTTTG-GCA-CTTTGAGCACTTTAGACAATTCTGGTTTTGTTAACT
1 GAGCTTTGGGCAATTCTGG-CTTGAGCACCTTAG-GAACTTTAGACAATTCTGACTTTGGTAACT
* * * *
48284217 CGGGAATTTTTGGTAATTCAGGTTTTGACAATTTAG
64 CGAGAACTTTTGGTAATTCAGGATTTGACAACTTAG
* *
48284253 GAGCTTTGGGCAATTCTGGCTTGAGCACCTTAGGAACTTTAGGCAATTTTGACTTTGGTAACTCG
1 GAGCTTTGGGCAATTCTGGCTTGAGCACCTTAGGAACTTTAGACAATTCTGACTTTGGTAACTCG
* ** *
48284318 AGAACTTTTGGTAATTTAGGATTTGGTAACTTGG
66 AGAACTTTTGGTAATTCAGGATTTGACAACTTAG
* * * * * * * * *
48284352 GAGCTTTGGGCAATTTTGGCTTGGGCGCCTCAGGAACTTTGGGCAATTTTGGCTTCGGTAACTC
1 GAGCTTTGGGCAATTCTGGCTTGAGCACCTTAGGAACTTTAGACAATTCTGACTTTGGTAACTC
48284416 AGGAGCTTTG
Statistics
Matches: 138, Mismatches: 23, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
98 3 0.02
99 131 0.95
100 4 0.03
ACGTcount: A:0.21, C:0.15, G:0.27, T:0.37
Consensus pattern (99 bp):
GAGCTTTGGGCAATTCTGGCTTGAGCACCTTAGGAACTTTAGACAATTCTGACTTTGGTAACTCG
AGAACTTTTGGTAATTCAGGATTTGACAACTTAG
Found at i:48284286 original size:33 final size:32
Alignment explanation
Indices: 48284249--48284481 Score: 137
Period size: 33 Copynumber: 7.1 Consensus size: 32
48284239 TTTTGACAAT
* *
48284249 TTAGGAGCTTTGGGCAATTCTGGCTTGAGCACC
1 TTAGGAACTTTGGGCAATTCTGGCTTG-GCAAC
* * * *
48284282 TTAGGAACTTTAGGCAATTTTGACTTTGGTAAC
1 TTAGGAACTTTGGGCAATTCTGGC-TTGGCAAC
* * * * *
48284315 -TCGAGAACTTTTGGTAATT-TAGGATTTGGTAAC
1 TTAG-GAACTTTGGGCAATTCT-GG-CTTGGCAAC
* * * **
48284348 TTGGGAGCTTTGGGCAATTTTGGCTTGGGCGCC
1 TTAGGAACTTTGGGCAATTCTGGCTT-GGCAAC
* * *
48284381 TCAGGAACTTTGGGCAATTTTGGCTTCGGTAAC
1 TTAGGAACTTTGGGCAATTCTGGCTT-GGCAAC
* * *
48284414 TCAGGAGCTTTGGGCAATTCTGGCTTGGGCATC
1 TTAGGAACTTTGGGCAATTCTGGCTT-GGCAAC
* * * *
48284447 TCAGGAACTTTAGACAATTCTGGCTTTGGTAAC
1 TTAGGAACTTTGGGCAATTCTGGC-TTGGCAAC
48284480 TT
1 TT
48284482 GAGAATTTTC
Statistics
Matches: 155, Mismatches: 37, Indels: 16
0.75 0.18 0.08
Matches are distributed among these distances:
32 5 0.03
33 142 0.92
34 8 0.05
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.35
Consensus pattern (32 bp):
TTAGGAACTTTGGGCAATTCTGGCTTGGCAAC
Found at i:48284391 original size:66 final size:66
Alignment explanation
Indices: 48284319--48284457 Score: 188
Period size: 66 Copynumber: 2.1 Consensus size: 66
48284309 GGTAACTCGA
* * * ** * *
48284319 GAACTTTTGGTAATTTAGGATTTGGTAACTTGGGAGCTTTGGGCAATTTTGGCTTGGGCGCCTCA
1 GAACTTTGGGCAATTTAGGATTCGGTAACTCAGGAGCTTTGGGCAATTCTGGCTTGGGCACCTCA
48284384 G
66 G
* * *
48284385 GAACTTTGGGCAATTTTGGCTTCGGTAACTCAGGAGCTTTGGGCAATTCTGGCTTGGGCATCTCA
1 GAACTTTGGGCAATTTAGGATTCGGTAACTCAGGAGCTTTGGGCAATTCTGGCTTGGGCACCTCA
48284450 G
66 G
48284451 GAACTTT
1 GAACTTT
48284458 AGACAATTCT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.19, C:0.17, G:0.30, T:0.35
Consensus pattern (66 bp):
GAACTTTGGGCAATTTAGGATTCGGTAACTCAGGAGCTTTGGGCAATTCTGGCTTGGGCACCTCA
G
Found at i:48284465 original size:66 final size:66
Alignment explanation
Indices: 48284342--48284480 Score: 197
Period size: 66 Copynumber: 2.1 Consensus size: 66
48284332 TTTAGGATTT
** * * * * *
48284342 GGTAACTTGGGAGCTTTGGGCAATTTTGGCTTGGGCGCCTCAGGAACTTTGGGCAATTTTGGCTT
1 GGTAACTCAGGAGCTTTGGGCAATTCTGGCTTGGGCACCTCAGGAACTTTAGACAATTCTGGCTT
48284407 C
66 C
*
48284408 GGTAACTCAGGAGCTTTGGGCAATTCTGGCTTGGGCATCTCAGGAACTTTAGACAATTCTGGCTT
1 GGTAACTCAGGAGCTTTGGGCAATTCTGGCTTGGGCACCTCAGGAACTTTAGACAATTCTGGCTT
*
48284473 T
66 C
48284474 GGTAACT
1 GGTAACT
48284481 TGAGAATTTT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.32
Consensus pattern (66 bp):
GGTAACTCAGGAGCTTTGGGCAATTCTGGCTTGGGCACCTCAGGAACTTTAGACAATTCTGGCTT
C
Found at i:48286755 original size:18 final size:15
Alignment explanation
Indices: 48286717--48286775 Score: 55
Period size: 15 Copynumber: 3.7 Consensus size: 15
48286707 TTGAATTTTA
48286717 GGTAATTCAGGCTTT
1 GGTAATTCAGGCTTT
48286732 GGTAATTCAAGAGCTTT
1 GGTAATTC-AG-GCTTT
** *
48286749 GGGTAATTTTGGCTTG
1 -GGTAATTCAGGCTTT
*
48286765 GGTACTTCAGG
1 GGTAATTCAGG
48286776 AACTCTAGAC
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
15 16 0.46
16 6 0.17
17 6 0.17
18 7 0.20
ACGTcount: A:0.20, C:0.12, G:0.31, T:0.37
Consensus pattern (15 bp):
GGTAATTCAGGCTTT
Found at i:48286841 original size:66 final size:66
Alignment explanation
Indices: 48286713--48287277 Score: 301
Period size: 66 Copynumber: 8.5 Consensus size: 66
48286703 TTGATTGAAT
* * * * * * ** * **
48286713 TTTAGGTAATTCAGGCTTTGGTAATTCAAGAGCTTTGGGTAATTTTGG-CTTGGGTACTTCAGGA
1 TTTAGATAATTCTGGCTTTGGTAACTCAGGAACTTTTGGTAATTCAGGTTTTGGCAAC-TCAGGA
48286777 AC
65 AC
* * * * * * * *
48286779 TCTAGACAATTCAGGCATTGGTAACTTAGGAACTTTTGGTGATTCATGTTTTGGCAACTCAGGAG
1 TTTAGATAATTCTGGCTTTGGTAACTCAGGAACTTTTGGTAATTCAGGTTTTGGCAACTCAGGAA
48286844 C
66 C
* * * * * * * * * * * **
48286845 TTTGGGTAATTTTGACTTGGGCACCTCAGGAACTTTAGGCAATTCAGGCTTTGGTAACTCAATAA
1 TTTAGATAATTCTGGCTTTGGTAACTCAGGAACTTTTGGTAATTCAGGTTTTGGCAACTCAGGAA
*
48286910 A
66 C
* * * * * * * * *
48286911 TTTTGATAATTC-GAGTTTTGGCAACTCAGGAGCTTTAGGTAATTCTGG-CTTGGACACCTCATG
1 TTTAGATAATTCTG-GCTTTGGTAACTCAGGAACTTTTGGTAATTCAGGTTTTGG-CAACTCAGG
48286974 AAC
64 AAC
** * * *
48286977 TTTAGGCAATTCTGGCTTTGGTAACTCAAGAACTTTTAGTAATTCAGGTTTTGGCAACTCAGGAG
1 TTTAGATAATTCTGGCTTTGGTAACTCAGGAACTTTTGGTAATTCAGGTTTTGGCAACTCAGGAA
*
48287042 T
66 C
* * *
48287043 TTTAGATAATTCTGGCTTTGGTAACTCAAGAGCTTTTGGTAATTCAAGTTTTGGCAACTCAGGAA
1 TTTAGATAATTCTGGCTTTGGTAACTCAGGAACTTTTGGTAATTCAGGTTTTGGCAACTCAGGAA
48287108 C
66 C
* * * * * * ** * * * ** * * *
48287109 TTTGGGTAATTCTAGCTTGGGCACCTTGGGAAAGTTTAGGCAATTCTTGCTTTGGTAACTCAAGA
1 TTTAGATAATTCTGGCTTTGGTAACTCAGG-AACTTTTGGTAATTCAGGTTTTGGCAACTCAGGA
48287174 AC
65 AC
* * * * * * * * * * **
48287176 TTTCGGTAATTCAGGTTTTAGTAGCTCAGG-AGTTTTAGGTAATTCTGGTTTGGGCACCTTTGGA
1 TTTAGATAATTCTGGCTTTGGTAACTCAGGAACTTTT-GGTAATTCAGGTTTTGGCAACTCAGGA
48287240 AC
65 AC
* * * * *
48287242 TCTAGGTAATTCTTGCTTTGGTAACTCTGAAACTTT
1 TTTAGATAATTCTGGCTTTGGTAACTCAGGAACTTT
48287278 GACTTCATCA
Statistics
Matches: 366, Mismatches: 125, Indels: 15
0.72 0.25 0.03
Matches are distributed among these distances:
65 10 0.03
66 294 0.80
67 62 0.17
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (66 bp):
TTTAGATAATTCTGGCTTTGGTAACTCAGGAACTTTTGGTAATTCAGGTTTTGGCAACTCAGGAA
C
Found at i:48286892 original size:99 final size:98
Alignment explanation
Indices: 48286712--48287120 Score: 431
Period size: 99 Copynumber: 4.1 Consensus size: 98
48286702 TTTGATTGAA
* * * * * *
48286712 TTTTAGGTAATTCAGGCTTTGGTAATTCAAGAGCTTTGGGTAATTTTGGCTTGGGTACTTCAGGA
1 TTTT-GGTAATTCA-GTTTTGGCAACTCAGGAGCTTTGGGTAATTTTGGCTTGGGCACCTCAGGA
* * * * *
48286777 ACTCTAGACAATTCAGGCATTGGTAACTTAGGAAC
64 ACTTTAGGCAATTCAGGCTTTGGTAACTCAAGAAC
* *
48286812 TTTTGGTGATTCATGTTTTGGCAACTCAGGAGCTTTGGGTAATTTTGACTTGGGCACCTCAGGAA
1 TTTTGGTAATTCA-GTTTTGGCAACTCAGGAGCTTTGGGTAATTTTGGCTTGGGCACCTCAGGAA
* *
48286877 CTTTAGGCAATTCAGGCTTTGGTAACTCAATAAA
65 CTTTAGGCAATTCAGGCTTTGGTAACTCAAGAAC
* * * * *
48286911 TTTTGATAATTCGAGTTTTGGCAACTCAGGAGCTTTAGGTAATTCTGGCTTGGACACCTCATGAA
1 TTTTGGTAATTC-AGTTTTGGCAACTCAGGAGCTTTGGGTAATTTTGGCTTGGGCACCTCAGGAA
*
48286976 CTTTAGGCAATTCTGGCTTTGGTAACTCAAGAAC
65 CTTTAGGCAATTCAGGCTTTGGTAACTCAAGAAC
* * * * * * * * * *
48287010 TTTTAGTAATTCAGGTTTTGGCAACTCAGGAGTTTTAGATAATTCTGGCTTTGGTAACTCAAGAG
1 TTTTGGTAATTCA-GTTTTGGCAACTCAGGAGCTTTGGGTAATTTTGGCTTGGGCACCTCAGGAA
* * * * * *
48287075 CTTTTGGTAATTCAAGTTTTGGCAACTCAGGAAC
65 CTTTAGGCAATTCAGGCTTTGGTAACTCAAGAAC
*
48287109 TTTGGGTAATTC
1 TTTTGGTAATTC
48287121 TAGCTTGGGC
Statistics
Matches: 262, Mismatches: 45, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
98 1 0.00
99 256 0.98
100 5 0.02
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.36
Consensus pattern (98 bp):
TTTTGGTAATTCAGTTTTGGCAACTCAGGAGCTTTGGGTAATTTTGGCTTGGGCACCTCAGGAAC
TTTAGGCAATTCAGGCTTTGGTAACTCAAGAAC
Found at i:48286954 original size:33 final size:33
Alignment explanation
Indices: 48286796--48287187 Score: 208
Period size: 33 Copynumber: 11.8 Consensus size: 33
48286786 AATTCAGGCA
* * * * *
48286796 TTGGTAACTTAGGAACTTTTGGTGATTC-ATGTT
1 TTGGCAACTCAGGAACTTTAGGTAATTCGA-GCT
* * *
48286829 TTGGCAACTCAGGAGCTTTGGGTAATTTTGA-CT
1 TTGGCAACTCAGGAACTTTAGGTAA-TTCGAGCT
* * *
48286862 TGGGCACCTCAGGAACTTTAGGCAATTC-AGGCT
1 TTGGCAACTCAGGAACTTTAGGTAATTCGA-GCT
* ** * * * *
48286895 TTGGTAACTCAATAAATTTTGATAATTCGAGTT
1 TTGGCAACTCAGGAACTTTAGGTAATTCGAGCT
*
48286928 TTGGCAACTCAGGAGCTTTAGGTAATTCTG-GC-
1 TTGGCAACTCAGGAACTTTAGGTAATTC-GAGCT
* * *
48286960 TTGGACACCTCATGAACTTTAGGCAATTCTG-GCT
1 TTGG-CAACTCAGGAACTTTAGGTAATTC-GAGCT
* * *
48286994 TTGGTAACTCAAGAACTTTTA-GTAATTC-AGGTT
1 TTGGCAACTCAGGAAC-TTTAGGTAATTCGA-GCT
** *
48287027 TTGGCAACTCAGGAGTTTTAGATAATTCTG-GCT
1 TTGGCAACTCAGGAACTTTAGGTAATTC-GAGCT
* * * * * *
48287060 TTGGTAACTCAAGAGCTTTTGGTAATTCAAGTT
1 TTGGCAACTCAGGAACTTTAGGTAATTCGAGCT
* *
48287093 TTGGCAACTCAGGAACTTTGGGTAATTCTAGCT
1 TTGGCAACTCAGGAACTTTAGGTAATTCGAGCT
* * ** * * **
48287126 TGGGCACCTTGGGAAAGTTTAGGCAATTCTTGCT
1 TTGGCAACTCAGG-AACTTTAGGTAATTCGAGCT
* * *
48287160 TTGGTAACTCAAGAACTTTCGGTAATTC
1 TTGGCAACTCAGGAACTTTAGGTAATTC
48287188 AGGTTTTAGT
Statistics
Matches: 267, Mismatches: 76, Indels: 32
0.71 0.20 0.09
Matches are distributed among these distances:
31 1 0.00
32 10 0.04
33 220 0.82
34 35 0.13
35 1 0.00
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (33 bp):
TTGGCAACTCAGGAACTTTAGGTAATTCGAGCT
Found at i:48287082 original size:18 final size:18
Alignment explanation
Indices: 48286993--48287090 Score: 57
Period size: 18 Copynumber: 5.8 Consensus size: 18
48286983 CAATTCTGGC
*
48286993 TTTGGTAACTCAAGAACT
1 TTTGGTAACTCAAGAGCT
* *
48287011 TTTAGTAATTC-AG-G-T
1 TTTGGTAACTCAAGAGCT
* *
48287026 TTTGGCAACTCAGGAG-T
1 TTTGGTAACTCAAGAGCT
* * *
48287043 TTTAGATAATTC-TG-GC-
1 TTT-GGTAACTCAAGAGCT
48287059 TTTGGTAACTCAAGAGCT
1 TTTGGTAACTCAAGAGCT
*
48287077 TTTGGTAATTCAAG
1 TTTGGTAACTCAAG
48287091 TTTTGGCAAC
Statistics
Matches: 58, Mismatches: 15, Indels: 14
0.67 0.17 0.16
Matches are distributed among these distances:
15 15 0.26
16 6 0.10
17 10 0.17
18 27 0.47
ACGTcount: A:0.28, C:0.13, G:0.21, T:0.38
Consensus pattern (18 bp):
TTTGGTAACTCAAGAGCT
Found at i:48287278 original size:166 final size:166
Alignment explanation
Indices: 48286885--48287278 Score: 414
Period size: 166 Copynumber: 2.4 Consensus size: 166
48286875 AACTTTAGGC
* * * * * * * * * * * *
48286885 AATTCAGGCTTTGGTAACTCAATAAATTTTGATAATTCGAGTTTTGGCAACTCAGGAGCTTTAGG
1 AATTCTGGCTTTGGCAACTCAAGAACTCTAGGTAATTCAAGCTTTGGCAACTCAGAAACTTTGGG
* * *** * *
48286950 TAATTCTGGCTTGGACACCTCATG-AACTTTAGGCAATTCTGGCTTTGGTAACTCAAGAACTTTT
66 TAATTCTAGCTTGGGCACCTTGGGAAAGTTTAGGCAATTCTGGCTTTGGTAACTCAAGAACTTTC
*
48287014 AGTAATTCAGGTTTTGGCAACTCAGGAGTTTTAGAT
131 AGTAATTCAGGTTTTAGCAACTCAGGAGTTTTAGAT
* * * * * *
48287050 AATTCTGGCTTTGGTAACTCAAGAGCTTTTGGTAATTCAAGTTTTGGCAACTCAGGAACTTTGGG
1 AATTCTGGCTTTGGCAACTCAAGAACTCTAGGTAATTCAAGCTTTGGCAACTCAGAAACTTTGGG
*
48287115 TAATTCTAGCTTGGGCACCTTGGGAAAGTTTAGGCAATTCTTGCTTTGGTAACTCAAGAACTTTC
66 TAATTCTAGCTTGGGCACCTTGGGAAAGTTTAGGCAATTCTGGCTTTGGTAACTCAAGAACTTTC
* * * *
48287180 GGTAATTCAGGTTTTAGTAGCTCAGGAGTTTTAGGT
131 AGTAATTCAGGTTTTAGCAACTCAGGAGTTTTAGAT
* *** ** * *
48287216 AATTCTGG-TTTGGGCACCTTTGGAACTCTAGGTAATTCTTGCTTTGGTAACTCTGAAACTTTG
1 AATTCTGGCTTT-GGCAACTCAAGAACTCTAGGTAATTCAAGCTTTGGCAACTCAGAAACTTTG
48287279 ACTTCATCAG
Statistics
Matches: 192, Mismatches: 35, Indels: 3
0.83 0.15 0.01
Matches are distributed among these distances:
165 79 0.41
166 113 0.59
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.37
Consensus pattern (166 bp):
AATTCTGGCTTTGGCAACTCAAGAACTCTAGGTAATTCAAGCTTTGGCAACTCAGAAACTTTGGG
TAATTCTAGCTTGGGCACCTTGGGAAAGTTTAGGCAATTCTGGCTTTGGTAACTCAAGAACTTTC
AGTAATTCAGGTTTTAGCAACTCAGGAGTTTTAGAT
Found at i:48287293 original size:99 final size:100
Alignment explanation
Indices: 48287050--48287268 Score: 287
Period size: 100 Copynumber: 2.2 Consensus size: 100
48287040 AGTTTTAGAT
* * * * * * * ** *
48287050 AATTCTGGCTTTGGTAACTCAAGAGCTTTTGGTAATTCAAGTTTTGGCAACTCAGGAACTTTGGG
1 AATTCTTGCTTTGGTAACTCAAGAACTTTCGGTAATTCAGGTTTTAGTAGCTCAGGAGTTTTAGG
* *
48287115 TAATTCTAGCTTGGGCACCTTGGGAAAGTTTAGGC
66 TAATTCTAGCTTGGGCACCTTGGGAAACTCTAGGC
48287150 AATTCTTGCTTTGGTAACTCAAGAACTTTCGGTAATTCAGGTTTTAGTAGCTCAGGAGTTTTAGG
1 AATTCTTGCTTTGGTAACTCAAGAACTTTCGGTAATTCAGGTTTTAGTAGCTCAGGAGTTTTAGG
* * * *
48287215 TAATTCTGGTTTGGGCACCTTTGG-AACTCTAGGT
66 TAATTCTAGCTTGGGCACCTTGGGAAACTCTAGGC
48287249 AATTCTTGCTTTGGTAACTC
1 AATTCTTGCTTTGGTAACTC
48287269 TGAAACTTTG
Statistics
Matches: 103, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
99 27 0.26
100 76 0.74
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.37
Consensus pattern (100 bp):
AATTCTTGCTTTGGTAACTCAAGAACTTTCGGTAATTCAGGTTTTAGTAGCTCAGGAGTTTTAGG
TAATTCTAGCTTGGGCACCTTGGGAAACTCTAGGC
Found at i:48287370 original size:33 final size:33
Alignment explanation
Indices: 48287324--48287435 Score: 109
Period size: 33 Copynumber: 3.4 Consensus size: 33
48287314 AGCTTTTGGA
* * *
48287324 AATTCTGGCTTTGGAAACTTTGGCACTTTAGGC
1 AATTCAGGTTTTGGAAACTCTGGCACTTTAGGC
* * * *
48287357 AACTCAGGTTTTGGCAACTCCGGAACTTTAGGC
1 AATTCAGGTTTTGGAAACTCTGGCACTTTAGGC
* * *
48287390 AATTCAGGTCTT-GACAACTCTGGCATTTTAGGT
1 AATTCAGGTTTTGGA-AACTCTGGCACTTTAGGC
*
48287423 ATTTCAGGTTTTG
1 AATTCAGGTTTTG
48287436 AGATTTCTGG
Statistics
Matches: 61, Mismatches: 16, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
32 1 0.02
33 60 0.98
ACGTcount: A:0.22, C:0.19, G:0.23, T:0.36
Consensus pattern (33 bp):
AATTCAGGTTTTGGAAACTCTGGCACTTTAGGC
Found at i:48289089 original size:26 final size:26
Alignment explanation
Indices: 48289053--48289105 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
48289043 ATGATAAAAT
48289053 ATGACTTGTCAACTCGATTAACTTGA
1 ATGACTTGTCAACTCGATTAACTTGA
48289079 ATGACTTGTCAACTCGATTAACTTGA
1 ATGACTTGTCAACTCGATTAACTTGA
48289105 A
1 A
48289106 ATTTTTTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.32, C:0.19, G:0.15, T:0.34
Consensus pattern (26 bp):
ATGACTTGTCAACTCGATTAACTTGA
Found at i:48295166 original size:33 final size:33
Alignment explanation
Indices: 48295068--48295178 Score: 105
Period size: 33 Copynumber: 3.4 Consensus size: 33
48295058 GGTTGGGTAA
* * * * *
48295068 TTTAGGTATTTCTGGTTTGGGTAACTCAGGAAC
1 TTTAGGCAATTCTGGTTTCGGTAATTCAGGAAT
* * *
48295101 TTTGGGCAATTCTGGTTTCGGCACTTCAGGAAT
1 TTTAGGCAATTCTGGTTTCGGTAATTCAGGAAT
* * *
48295134 TTTAGGCAATTCTGGTTTTGTTAATTCGGGAAT
1 TTTAGGCAATTCTGGTTTCGGTAATTCAGGAAT
* *
48295167 TTTCGGTAATTC
1 TTTAGGCAATTC
48295179 AGGAGCTTTT
Statistics
Matches: 62, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
33 62 1.00
ACGTcount: A:0.20, C:0.14, G:0.25, T:0.41
Consensus pattern (33 bp):
TTTAGGCAATTCTGGTTTCGGTAATTCAGGAAT
Found at i:48295235 original size:51 final size:51
Alignment explanation
Indices: 48295180--48295280 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
48295170 CGGTAATTCA
* * * *
48295180 GGAGCTTTTGGCAATTCTGGCTTAGGCACCTCAGGAACTTTTGGCAACTCG
1 GGAGCCTTGGGCAACTCTGGCTTAGGCACCTCAGGAACTTTAGGCAACTCG
* *
48295231 GGAGCCTTGGGCAACTCTGGCTTGGGCACCTCGGGAACTTTAGGCAACTC
1 GGAGCCTTGGGCAACTCTGGCTTAGGCACCTCAGGAACTTTAGGCAACTC
48295281 TGGCTTTGGT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.19, C:0.26, G:0.30, T:0.26
Consensus pattern (51 bp):
GGAGCCTTGGGCAACTCTGGCTTAGGCACCTCAGGAACTTTAGGCAACTCG
Found at i:48295277 original size:33 final size:33
Alignment explanation
Indices: 48295222--48295286 Score: 94
Period size: 33 Copynumber: 2.0 Consensus size: 33
48295212 AGGAACTTTT
* *
48295222 GGCAACTCGGGAGCCTTGGGCAACTCTGGCTTG
1 GGCAACTCGGGAACCTTAGGCAACTCTGGCTTG
* *
48295255 GGCACCTCGGGAACTTTAGGCAACTCTGGCTT
1 GGCAACTCGGGAACCTTAGGCAACTCTGGCTT
48295287 TGGTAACCCG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (33 bp):
GGCAACTCGGGAACCTTAGGCAACTCTGGCTTG
Found at i:48295303 original size:33 final size:33
Alignment explanation
Indices: 48295240--48295304 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
48295230 GGGAGCCTTG
* *
48295240 GGCAACTCTGGCTTGGGCACCTCGGGAACTTTA
1 GGCAACTCTGGCTTGGGAACCTCGGAAACTTTA
*
48295273 GGCAACTCTGGCTTTGGTAACC-CGGAAACTTT
1 GGCAACTCTGGC-TTGGGAACCTCGGAAACTTT
48295305 TGGTGCTTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 21 0.75
34 7 0.25
ACGTcount: A:0.20, C:0.26, G:0.28, T:0.26
Consensus pattern (33 bp):
GGCAACTCTGGCTTGGGAACCTCGGAAACTTTA
Found at i:48295448 original size:51 final size:51
Alignment explanation
Indices: 48295393--48295541 Score: 226
Period size: 51 Copynumber: 2.9 Consensus size: 51
48295383 AGGTTTTTTC
* *
48295393 AACTCGGGAACCTTAGGAAATTCAGGCTTTGGCAACTCTGGCACTTTTGGA
1 AACTCGGGAACCTTAGGAAATTCAGGTTTTGGCAACTCTGGCACTTTCGGA
* * *
48295444 AACTCAGGAACCTTAGGTAGTTCAGGTTTTGGCAACTCTGGCACTTTCGGA
1 AACTCGGGAACCTTAGGAAATTCAGGTTTTGGCAACTCTGGCACTTTCGGA
* * *
48295495 AACTCGGGAACCTTAGGCAATTCAGGTTTTGGCAACTCCGGAACTTT
1 AACTCGGGAACCTTAGGAAATTCAGGTTTTGGCAACTCTGGCACTTT
48295542 AGGCAATTCA
Statistics
Matches: 88, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
51 88 1.00
ACGTcount: A:0.25, C:0.22, G:0.25, T:0.28
Consensus pattern (51 bp):
AACTCGGGAACCTTAGGAAATTCAGGTTTTGGCAACTCTGGCACTTTCGGA
Found at i:48295567 original size:15 final size:15
Alignment explanation
Indices: 48295510--48295569 Score: 57
Period size: 15 Copynumber: 3.8 Consensus size: 15
48295500 GGGAACCTTA
* *
48295510 GGCAATTCAGGTTTT
1 GGCAACTCAGGCTTT
*
48295525 GGCAACTCCGGAACTTT
1 GGCAACTCAGG--CTTT
*
48295542 AGGCAATTCAGGCTTT
1 -GGCAACTCAGGCTTT
48295558 GGCAACTCAGGC
1 GGCAACTCAGGC
48295570 ATTTTAGGTA
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
15 20 0.56
16 4 0.11
17 3 0.08
18 9 0.25
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (15 bp):
GGCAACTCAGGCTTT
Found at i:48295592 original size:33 final size:33
Alignment explanation
Indices: 48295495--48295592 Score: 115
Period size: 33 Copynumber: 3.0 Consensus size: 33
48295485 CACTTTCGGA
* *
48295495 AACTCGGGAACCTTAGGCAATTCAGGTTTTGGC
1 AACTCAGGAACTTTAGGCAATTCAGGTTTTGGC
* *
48295528 AACTCCGGAACTTTAGGCAATTCAGGCTTTGGC
1 AACTCAGGAACTTTAGGCAATTCAGGTTTTGGC
* * * * *
48295561 AACTCAGGCATTTTAGGTATTTCGGGTTTTGG
1 AACTCAGGAACTTTAGGCAATTCAGGTTTTGG
48295593 GATTTCCGGT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (33 bp):
AACTCAGGAACTTTAGGCAATTCAGGTTTTGGC
Found at i:48296896 original size:73 final size:73
Alignment explanation
Indices: 48296777--48296916 Score: 219
Period size: 73 Copynumber: 1.9 Consensus size: 73
48296767 CTATTTTGTT
* * * *
48296777 TTTTTAATAAGTGAGTTGCATCTCAAACTTTTTAGACCGAATCAAACGGGATTCGGGTCACACAA
1 TTTTTAACAAGTGAGTTGCATCTCAAACTTTTCAGACCGAATCAAACGAGATTCGAGTCACACAA
48296842 CTCAACAG
66 CTCAACAG
*
48296850 TTTTTAACAAGTGAGTTGCA-CTTCGAACTTTTCAGACCGAATCAAACGAGATTCGAGTCACACA
1 TTTTTAACAAGTGAGTTGCATC-TCAAACTTTTCAGACCGAATCAAACGAGATTCGAGTCACACA
48296914 ACT
65 ACT
48296917 GTAATAATTT
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
72 1 0.02
73 60 0.98
ACGTcount: A:0.33, C:0.21, G:0.17, T:0.29
Consensus pattern (73 bp):
TTTTTAACAAGTGAGTTGCATCTCAAACTTTTCAGACCGAATCAAACGAGATTCGAGTCACACAA
CTCAACAG
Found at i:48297725 original size:19 final size:20
Alignment explanation
Indices: 48297689--48297728 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
48297679 ATCCTCATAA
* *
48297689 TTTTAGTATTTTTTTAATTT
1 TTTTAGTATATTTATAATTT
48297709 TTTTA-TATATTTATAATTT
1 TTTTAGTATATTTATAATTT
48297728 T
1 T
48297729 CCATACTTCA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.72
Consensus pattern (20 bp):
TTTTAGTATATTTATAATTT
Found at i:48298149 original size:21 final size:21
Alignment explanation
Indices: 48298114--48298160 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 21
48298104 TCTCATATTT
48298114 TTTTTTCTATATTCCCTCAAAA
1 TTTTTTCTATATT-CCTCAAAA
* *
48298136 TTTTTTGTAT-TTCCTCATAA
1 TTTTTTCTATATTCCTCAAAA
48298156 TTTTT
1 TTTTT
48298161 AGTACTTATT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 12 0.52
21 2 0.09
22 9 0.39
ACGTcount: A:0.21, C:0.17, G:0.02, T:0.60
Consensus pattern (21 bp):
TTTTTTCTATATTCCTCAAAA
Found at i:48298452 original size:17 final size:17
Alignment explanation
Indices: 48298427--48298460 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
48298417 TTATCTAGTG
*
48298427 TCGAATTTTTTTTTAAA
1 TCGAATTTTTATTTAAA
*
48298444 TCGACTTTTTATTTAAA
1 TCGAATTTTTATTTAAA
48298461 AACGAAAATG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.29, C:0.09, G:0.06, T:0.56
Consensus pattern (17 bp):
TCGAATTTTTATTTAAA
Found at i:48299311 original size:3 final size:3
Alignment explanation
Indices: 48299303--48299361 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
48299293 TATTAACAGA
48299303 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
48299351 AAT AAT AAT AA
1 AAT AAT AAT AA
48299362 AAGAAGAATA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:48302720 original size:29 final size:30
Alignment explanation
Indices: 48302681--48302745 Score: 80
Period size: 33 Copynumber: 2.1 Consensus size: 30
48302671 TATTATATTG
48302681 TTATTTAATATT-TATATTATA-ATATATA
1 TTATTTAATATTATATATTATACATATATA
*
48302709 TTATTTATATATTAGTATTTTATATCATATATA
1 TTATTTA-ATATTA-TATATTATA-CATATATA
48302742 TTAT
1 TTAT
48302746 ATATTACAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
28 7 0.23
29 5 0.16
31 8 0.26
33 11 0.35
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (30 bp):
TTATTTAATATTATATATTATACATATATA
Found at i:48302746 original size:7 final size:7
Alignment explanation
Indices: 48302688--48302751 Score: 53
Period size: 7 Copynumber: 8.9 Consensus size: 7
48302678 TTGTTATTTA
48302688 ATATT-T
1 ATATTAT
48302694 ATATTAT
1 ATATTAT
48302701 A-ATATAT
1 ATAT-TAT
48302708 ATTATTTAT
1 A-TA-TTAT
48302717 ATATTAGT
1 ATATTA-T
*
48302725 ATTTTAT
1 ATATTAT
48302732 ATCA-TAT
1 AT-ATTAT
48302739 ATATTAT
1 ATATTAT
48302746 ATATTA
1 ATATTA
48302752 CAAGGTTCTG
Statistics
Matches: 48, Mismatches: 2, Indels: 15
0.74 0.03 0.23
Matches are distributed among these distances:
6 8 0.17
7 26 0.54
8 8 0.17
9 5 0.10
10 1 0.02
ACGTcount: A:0.41, C:0.02, G:0.02, T:0.56
Consensus pattern (7 bp):
ATATTAT
Found at i:48303564 original size:2 final size:2
Alignment explanation
Indices: 48303552--48303585 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
48303542 GATTTACGAC
48303552 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
48303586 ATTTTTCTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:48303818 original size:11 final size:11
Alignment explanation
Indices: 48303798--48303839 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
48303788 ATAGTTTAAT
*
48303798 TTATTGATATA
1 TTATTTATATA
48303809 TTATTTATATA
1 TTATTTATATA
*
48303820 TT-TTTATTTA
1 TTATTTATATA
*
48303830 ATATTTATAT
1 TTATTTATAT
48303840 TATATTAGTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (11 bp):
TTATTTATATA
Found at i:48304631 original size:33 final size:33
Alignment explanation
Indices: 48304594--48304877 Score: 237
Period size: 33 Copynumber: 8.6 Consensus size: 33
48304584 GTTAGGCAAT
* * *
48304594 TCAGGAACTTTAGGTAATTCAGGTTTTGGCAAC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
** * * *
48304627 TCAGGAGTTTTGGGCAATTCTGGTTTCGGTACC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
** *
48304660 TCTCGAACTTTAGGCAATTCTGGTTTTGTTAAC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
* * * ** *
48304693 TCGGGAATTTTAGGTAATTGAGGTTTTGGTAAT
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
* * * * * *
48304726 TCAGGAGCTTTTGGCAATTCTGGCTTAGGCACC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
* * * *
48304759 TCAGGAACTTTGGGTAATTCAGGTTTTGGCAAC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
*** * *
48304792 TCAGTCGCTTTGGGCAATTCTGGTTTTGGTACC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
* *
48304825 TCAGGAATTTTAGGCAATTCTGGTTTTGGTACC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
*
48304858 TCAGGAA-TTGTTGGCAATTC
1 TCAGGAACTT-TAGGCAATTC
48304878 AGGAGCTTTG
Statistics
Matches: 194, Mismatches: 56, Indels: 2
0.77 0.22 0.01
Matches are distributed among these distances:
32 2 0.01
33 192 0.99
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (33 bp):
TCAGGAACTTTAGGCAATTCTGGTTTTGGTAAC
Found at i:48304732 original size:99 final size:98
Alignment explanation
Indices: 48304588--48304880 Score: 300
Period size: 99 Copynumber: 3.0 Consensus size: 98
48304578 CGGCATGTTA
* *
48304588 GGCAATTCAGGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAGTTTTGGGCAATTCTGGTTT
1 GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGTAACTCAGGAGTTTT-GGCAATTCTGGTTT
* * *
48304653 CGGTACCTCTCGAACTTTAGGCAATTCTGGTTTT
65 AGGTACCTCACGAACTTTAGGCAATTCAGGTTTT
** * * * * *
48304687 GTTAACTCGGGAATTTTAGGTAATTGAGGTTTTGGTAATTCAGGAGCTTTTGGCAATTCTGGCTT
1 GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGTAACTCAGGAG-TTTTGGCAATTCTGGTTT
* * * *
48304752 AGGCACCTCAGGAACTTTGGGTAATTCAGGTTTT
65 AGGTACCTCACGAACTTTAGGCAATTCAGGTTTT
*** * * * * *
48304786 GGCAACTCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGAATTTTAGGCAATTCTGGTTT
1 GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGTAACTCAGGAGTTTT-GGCAATTCTGGTTT
* * *
48304851 TGGTACCTCAGGAA-TTGTTGGCAATTCAGG
65 AGGTACCTCACGAACTT-TAGGCAATTCAGG
48304881 AGCTTTGGGC
Statistics
Matches: 156, Mismatches: 35, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
98 6 0.04
99 146 0.94
100 4 0.03
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.36
Consensus pattern (98 bp):
GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGTAACTCAGGAGTTTTGGCAATTCTGGTTTA
GGTACCTCACGAACTTTAGGCAATTCAGGTTTT
Found at i:48304945 original size:33 final size:33
Alignment explanation
Indices: 48304876--48304952 Score: 91
Period size: 33 Copynumber: 2.3 Consensus size: 33
48304866 TGTTGGCAAT
* * * * *
48304876 TCAGGAGCTTTGGGCAATTCTGGCTTAGGCACC
1 TCAGGAACTTTAGGCAATTCTGACTTAGACAAC
* *
48304909 TCAGGAACTTTAGGCAATTCTGACTTTGATAAC
1 TCAGGAACTTTAGGCAATTCTGACTTAGACAAC
48304942 TCAGGAACTTT
1 TCAGGAACTTT
48304953 TGGTGATTCA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 37 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (33 bp):
TCAGGAACTTTAGGCAATTCTGACTTAGACAAC
Found at i:48304964 original size:84 final size:84
Alignment explanation
Indices: 48304784--48304948 Score: 231
Period size: 84 Copynumber: 2.0 Consensus size: 84
48304774 AATTCAGGTT
* ** * * * * **
48304784 TTGGCAACTCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGAATTTTAGGCAATTCTGGT
1 TTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTGAC
* *
48304849 TTTGGTACCTCAGGAATTG
66 TTTGATAACTCAGGAATTG
48304868 TTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTGAC
1 TTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTGAC
48304933 TTTGATAACTCAGGAA
66 TTTGATAACTCAGGAA
48304949 CTTTTGGTGA
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
84 70 1.00
ACGTcount: A:0.22, C:0.19, G:0.25, T:0.33
Consensus pattern (84 bp):
TTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTGAC
TTTGATAACTCAGGAATTG
Found at i:48307066 original size:42 final size:42
Alignment explanation
Indices: 48307001--48307155 Score: 160
Period size: 42 Copynumber: 3.7 Consensus size: 42
48306991 AAATCGTACA
*
48307001 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
*
48307043 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATC-AATATCG
* * *
48307085 ATG-CGATGTCCCAGACATGGTCTTATACAT-AAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTC-T-TACATGAAA--TCAATATCG
48307128 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
48307156 CGATAACATA
Statistics
Matches: 94, Mismatches: 8, Indels: 22
0.76 0.06 0.18
Matches are distributed among these distances:
41 16 0.17
42 43 0.46
43 17 0.18
44 18 0.19
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
Found at i:48314329 original size:42 final size:42
Alignment explanation
Indices: 48314264--48314419 Score: 169
Period size: 42 Copynumber: 3.7 Consensus size: 42
48314254 AAATCGTACA
*
48314264 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
*
48314306 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACATGAAATC-AATATCG
* * *
48314348 ATGCCGATGTCCCAGACATGGTCTTATACAT-AAATCTCAA-ATCG
1 ATGCCAACGTCCCAGACGTGGTC-T-TACATGAAA--TCAATATCG
48314392 ATGCCAACGTCCCAGACGTGGTCTTACA
1 ATGCCAACGTCCCAGACGTGGTCTTACA
48314420 CGATAACATA
Statistics
Matches: 96, Mismatches: 8, Indels: 20
0.77 0.06 0.16
Matches are distributed among these distances:
41 2 0.02
42 51 0.53
43 14 0.15
44 27 0.28
45 2 0.02
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACATGAAATCAATATCG
Found at i:48315745 original size:33 final size:33
Alignment explanation
Indices: 48315708--48315871 Score: 159
Period size: 33 Copynumber: 5.0 Consensus size: 33
48315698 TTCAGGCTTG
* * *
48315708 GGCAATTCTGGCTTAGGTAACTCGGGAACGTTA
1 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
*
48315741 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTT
1 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
* * * * * * *
48315774 GGTAATTCAGGTTTTGGCAACTCGGGAGCTTTG
1 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
* * **
48315807 GGTAATTCAGGC-TTGGGCACTTCAGGAACTTTA
1 GGCAATTCTGGCTTTGGTAAC-TCAGGAACTTTA
* *
48315840 GGAAATTCTGGCTTTGGTAACTCCGGAACTTT
1 GGCAATTCTGGCTTTGGTAACTCAGGAACTTT
48315872 TGGTGCTTCA
Statistics
Matches: 107, Mismatches: 22, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
32 6 0.06
33 95 0.89
34 6 0.06
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.32
Consensus pattern (33 bp):
GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
Found at i:48316024 original size:51 final size:51
Alignment explanation
Indices: 48315942--48316090 Score: 154
Period size: 51 Copynumber: 2.9 Consensus size: 51
48315932 GGATTTTTTC
* * * * ** *
48315942 AACTCGGGAATCTTAGGAAATTCAGGCTTTGGCAACTCTGGCACTTTCGGA
1 AACTCAGGAACCTTAGGCAATTCTGATTTTGGCAACTCTGGAACTTTCGGA
* *
48315993 AACTCAGGAACCTTGGGTAATTCTGATTTTGGCAACTCTGGAACTTTCGGA
1 AACTCAGGAACCTTAGGCAATTCTGATTTTGGCAACTCTGGAACTTTCGGA
* * * *** *
48316044 AACTCGGGGACCTTAGGCAATTCGGGCCTTGGCAACTCCGGAACTTT
1 AACTCAGGAACCTTAGGCAATTCTGATTTTGGCAACTCTGGAACTTT
48316091 AGGCAATTCA
Statistics
Matches: 81, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 81 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.28
Consensus pattern (51 bp):
AACTCAGGAACCTTAGGCAATTCTGATTTTGGCAACTCTGGAACTTTCGGA
Found at i:48316081 original size:33 final size:33
Alignment explanation
Indices: 48316044--48316117 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
48316034 AACTTTCGGA
* *
48316044 AACTCGGGGACCTTAGGCAATTCGGGCCTTGGC
1 AACTCGGGAACCTTAGGCAATTCAGGCCTTGGC
* * **
48316077 AACTCCGGAACTTTAGGCAATTCAGGTTTTGGC
1 AACTCGGGAACCTTAGGCAATTCAGGCCTTGGC
48316110 AACTCGGG
1 AACTCGGG
48316118 CATTTTAGGT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.22, C:0.24, G:0.30, T:0.24
Consensus pattern (33 bp):
AACTCGGGAACCTTAGGCAATTCAGGCCTTGGC
Found at i:48316136 original size:33 final size:33
Alignment explanation
Indices: 48316072--48316138 Score: 80
Period size: 33 Copynumber: 2.0 Consensus size: 33
48316062 AATTCGGGCC
*
48316072 TTGGCAACTCCGGAACTTTAGGCAATTCAGGTT
1 TTGGCAACTCCGGAACTTTAGGCAATGCAGGTT
* * * * *
48316105 TTGGCAACTCGGGCATTTTAGGTAGTGCAGGTT
1 TTGGCAACTCCGGAACTTTAGGCAATGCAGGTT
48316138 T
1 T
48316139 CGGGATTTCT
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (33 bp):
TTGGCAACTCCGGAACTTTAGGCAATGCAGGTT
Found at i:48320355 original size:5 final size:5
Alignment explanation
Indices: 48320337--48320379 Score: 54
Period size: 5 Copynumber: 9.0 Consensus size: 5
48320327 TATTATAAGA
* *
48320337 TATAT TAT-T TATAT TATAT TATAT TATAT CATA- CATAT TATAT
1 TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT TATAT
48320380 ATTACAAGGT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
4 8 0.24
5 26 0.76
ACGTcount: A:0.40, C:0.05, G:0.00, T:0.56
Consensus pattern (5 bp):
TATAT
Found at i:48322487 original size:33 final size:33
Alignment explanation
Indices: 48322444--48322700 Score: 192
Period size: 33 Copynumber: 7.8 Consensus size: 33
48322434 CGGCATGTTA
* * *
48322444 GGCAATTCAGGAACTTTAGGTAATTCAGGTTTT
1 GGCAACTCAGGAACTTTAGGCAATTCTGGTTTT
** * *
48322477 GGCAACTCAGGAGTTTTGGGCAATTCTGGTTTC
1 GGCAACTCAGGAACTTTAGGCAATTCTGGTTTT
* * *
48322510 GGTACCTCTGGAACTTTAGGCAATTCTGGTTTT
1 GGCAACTCAGGAACTTTAGGCAATTCTGGTTTT
** * * * **
48322543 GTTAACTCGGGAATTTTAGGTAATTGAGGTTTT
1 GGCAACTCAGGAACTTTAGGCAATTCTGGTTTT
* * * * * *
48322576 GGTAATTCAGGAGCTTTTGGCAATTCTGGCTTA
1 GGCAACTCAGGAACTTTAGGCAATTCTGGTTTT
* * * *
48322609 GGCACCTCAGGAACTTTTGGTAATTCAGGTTTT
1 GGCAACTCAGGAACTTTAGGCAATTCTGGTTTT
*** *
48322642 GGCAACTCAGTCGCTTTGGGCAATTCTGGTTTT
1 GGCAACTCAGGAACTTTAGGCAATTCTGGTTTT
* * *
48322675 GGTACCTCAGGAA-TTGTTGGCAATTC
1 GGCAACTCAGGAACTT-TAGGCAATTC
48322701 AGGAGCTTTG
Statistics
Matches: 170, Mismatches: 53, Indels: 2
0.76 0.24 0.01
Matches are distributed among these distances:
32 2 0.01
33 168 0.99
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (33 bp):
GGCAACTCAGGAACTTTAGGCAATTCTGGTTTT
Found at i:48322574 original size:66 final size:66
Alignment explanation
Indices: 48322450--48322703 Score: 224
Period size: 66 Copynumber: 3.8 Consensus size: 66
48322440 GTTAGGCAAT
* * * * * *
48322450 TCAGGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAGTTTTGGGCAATTCTGGTTTCGGTAC
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGCAACTCAGGAATTTTAGGCAATTCAGGTTTCGGTAA
48322515 C
66 C
* ** * * * *
48322516 TCTGGAACTTTAGGCAATTCTGGTTTTGTTAACTCGGGAATTTTAGGTAATTGAGGTTTTGGTAA
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGCAACTCAGGAATTTTAGGCAATTCAGGTTTCGGTAA
*
48322581 T
66 C
* * * * * * * *
48322582 TCAGGAGCTTTTGGCAATTCTGGCTTAGGCACCTCAGGAACTTTT-GGTAATTCAGGTTTTGGCA
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGCAACTCAGGAA-TTTTAGGCAATTCAGGTTTCGGTA
48322646 AC
65 AC
*** * * *
48322648 TCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGAATTGTT-GGCAATTCAGG
1 TCAGGAACTTTAGGCAATTCTGGTTTTGGCAACTCAGGAATT-TTAGGCAATTCAGG
48322704 AGCTTTGGGC
Statistics
Matches: 153, Mismatches: 33, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
65 2 0.01
66 147 0.96
67 4 0.03
ACGTcount: A:0.21, C:0.16, G:0.27, T:0.37
Consensus pattern (66 bp):
TCAGGAACTTTAGGCAATTCTGGTTTTGGCAACTCAGGAATTTTAGGCAATTCAGGTTTCGGTAA
C
Found at i:48322649 original size:99 final size:99
Alignment explanation
Indices: 48322444--48322700 Score: 266
Period size: 99 Copynumber: 2.6 Consensus size: 99
48322434 CGGCATGTTA
* *
48322444 GGCAATTCAGGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAGTTTTGGGCAATTCTGGTTT
1 GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAGTTTTGGGCAATTCTGGCTT
* * * *
48322509 CGGTACCTCTGGAACTTTAGGCAATTCTGGTTTT
66 AGGCACCTCAGGAACTTTAGGCAATTCAGGTTTT
** * * * * *
48322543 GTTAACTCGGGAATTTTAGGTAATTGAGGTTTTGGTAATTCAGGAGCTTTT-GGCAATTCTGGCT
1 GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAG-TTTTGGGCAATTCTGGCT
* *
48322607 TAGGCACCTCAGGAACTTTTGGTAATTCAGGTTTT
65 TAGGCACCTCAGGAACTTTAGGCAATTCAGGTTTT
*** * * * * * *
48322642 GGCAACTCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGAATTGTT-GGCAATTC
1 GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAGTT-TTGGGCAATTC
48322701 AGGAGCTTTG
Statistics
Matches: 127, Mismatches: 29, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
98 2 0.02
99 121 0.95
100 4 0.03
ACGTcount: A:0.21, C:0.16, G:0.26, T:0.37
Consensus pattern (99 bp):
GGCAACTCAGGAACTTTAGGTAATTCAGGTTTTGGCAACTCAGGAGTTTTGGGCAATTCTGGCTT
AGGCACCTCAGGAACTTTAGGCAATTCAGGTTTT
Found at i:48322710 original size:51 final size:51
Alignment explanation
Indices: 48322638--48322751 Score: 149
Period size: 51 Copynumber: 2.2 Consensus size: 51
48322628 GTAATTCAGG
* ** * * *
48322638 TTTTGGCAACTCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGAA-
1 TTTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAAC
48322688 TTGTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAAC
1 TT-TTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAAC
*
48322740 TTTAGGCAATTC
1 TTTTGGCAATTC
48322752 TGACTTTGAT
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
50 2 0.04
51 51 0.93
52 2 0.04
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.33
Consensus pattern (51 bp):
TTTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAAC
Found at i:48322735 original size:84 final size:84
Alignment explanation
Indices: 48322615--48322771 Score: 179
Period size: 84 Copynumber: 1.9 Consensus size: 84
48322605 CTTAGGCACC
* * * * *** * ** * *
48322615 TCAGGAACTTTTGGTAATTCAGGTTTTGGCAACTCAGTCGCTTTGGGCAATTCTGGTTTTGGTAC
1 TCAGGAACTTTGGGCAATTCAGGCTTAGGCAACTCAGGAACTTTAGGCAATTCTGACTTTGATAA
48322680 CTCAGGAATTGTTGGCAAT
66 CTCAGGAATTGTTGGCAAT
* * *
48322699 TCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTGACTTTGATAA
1 TCAGGAACTTTGGGCAATTCAGGCTTAGGCAACTCAGGAACTTTAGGCAATTCTGACTTTGATAA
48322764 CTCAGGAA
66 CTCAGGAA
48322772 CTTTTGGTGA
Statistics
Matches: 58, Mismatches: 15, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
84 58 1.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.33
Consensus pattern (84 bp):
TCAGGAACTTTGGGCAATTCAGGCTTAGGCAACTCAGGAACTTTAGGCAATTCTGACTTTGATAA
CTCAGGAATTGTTGGCAAT
Found at i:48322790 original size:117 final size:117
Alignment explanation
Indices: 48322572--48322934 Score: 446
Period size: 114 Copynumber: 3.1 Consensus size: 117
48322562 GTAATTGAGG
* * * *
48322572 TTTTGGTAATTCAGGAGCTTTTGGCAATTCTGGCTTAGGCACCTCAGGAACTTTTGGTAATTCAG
1 TTTTGGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
* * *** * * * * *
48322637 GTTTTGGCAACTCAGTCGCTTTGGGCAATTCTGGTTTTGGTACCTCAGGA-A
66 GCTTTGGTAACTCAGGAACTTTTGGTAATTCAGGTTTTGGCAACTCAGGAGA
*
48322688 TTGTTGGCAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCT
1 TT-TTGGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCT
* * * * *
48322753 GACTTTGATAACTCAGGAACTTTTGGTGATTCAGGTTTTGGCAACTCGGGAGC
65 GGCTTTGGTAACTCAGGAACTTTTGGTAATTCAGGTTTTGGCAACTCAGGAGA
* * * *
48322806 TTTGGGTAATTCA-G-GC-TTGGGCAATTCTGGCTTAGGTAACTCGGGAACTTTAGGCAATTCTG
1 TTTTGGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
* *
48322868 GCTTTGGTAACTCAGGAACTTTTGGTAATTCAGGTTTTGGCAACTCGGGAGC
66 GCTTTGGTAACTCAGGAACTTTTGGTAATTCAGGTTTTGGCAACTCAGGAGA
*
48322920 TTTGGGTAATTCAGG
1 TTTTGGTAATTCAGG
48322935 CTTGGGCACT
Statistics
Matches: 216, Mismatches: 28, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
114 105 0.49
115 3 0.01
116 3 0.01
117 103 0.48
118 2 0.01
ACGTcount: A:0.21, C:0.17, G:0.28, T:0.34
Consensus pattern (117 bp):
TTTTGGTAATTCAGGAGCTTTGGGCAATTCTGGCTTAGGCACCTCAGGAACTTTAGGCAATTCTG
GCTTTGGTAACTCAGGAACTTTTGGTAATTCAGGTTTTGGCAACTCAGGAGA
Found at i:48322799 original size:33 final size:33
Alignment explanation
Indices: 48322693--48322829 Score: 103
Period size: 33 Copynumber: 4.2 Consensus size: 33
48322683 AGGAATTGTT
* * * * *
48322693 GGCAATTCAGGAGCTTTGGGCAATTCTGGCTTA
1 GGCAACTCAGGAACTTTGGGTAATTCAGGCTTG
* * * * * *
48322726 GGCACCTCAGGAACTTTAGGCAATTCTGACTTT
1 GGCAACTCAGGAACTTTGGGTAATTCAGGCTTG
** * * * *
48322759 GATAACTCAGGAACTTTTGGTGATTCAGGTTTT
1 GGCAACTCAGGAACTTTGGGTAATTCAGGCTTG
* *
48322792 GGCAACTCGGGAGCTTTGGGTAATTCAGGCTTG
1 GGCAACTCAGGAACTTTGGGTAATTCAGGCTTG
48322825 GGCAA
1 GGCAA
48322830 TTCTGGCTTA
Statistics
Matches: 81, Mismatches: 23, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
33 81 1.00
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (33 bp):
GGCAACTCAGGAACTTTGGGTAATTCAGGCTTG
Found at i:48322846 original size:81 final size:81
Alignment explanation
Indices: 48322744--48322910 Score: 199
Period size: 81 Copynumber: 2.1 Consensus size: 81
48322734 AGGAACTTTA
* * ** * * *
48322744 GGCAATTCTGACTTTGATAACTCAGGAACTTTTGGTGATTCAGGTTTTGGCAACTCGGGAGCTTT
1 GGCAATTCTGACTTAGATAACTCAGGAACTTTAGGCAATTCAGGCTTTGGCAACTCAGGAACTTT
48322809 GGGTAATTCAGGCTTG
66 GGGTAATTCAGGCTTG
* * * * *
48322825 GGCAATTCTGGCTTAGGTAACTCGGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTT
1 GGCAATTCTGACTTAGATAACTCAGGAACTTTAGGCAATTCAGGCTTTGGCAACTCAGGAACTTT
* * *
48322890 TGGTAATTCAGGTTTT
66 GGGTAATTCAGGCTTG
48322906 GGCAA
1 GGCAA
48322911 CTCGGGAGCT
Statistics
Matches: 71, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (81 bp):
GGCAATTCTGACTTAGATAACTCAGGAACTTTAGGCAATTCAGGCTTTGGCAACTCAGGAACTTT
GGGTAATTCAGGCTTG
Found at i:48322862 original size:33 final size:33
Alignment explanation
Indices: 48322825--48322988 Score: 168
Period size: 33 Copynumber: 5.0 Consensus size: 33
48322815 TTCAGGCTTG
* *
48322825 GGCAATTCTGGCTTAGGTAACTCGGGAACTTTA
1 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
*
48322858 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTT
1 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
* * * * * * *
48322891 GGTAATTCAGGTTTTGGCAACTCGGGAGCTTTG
1 GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
* * **
48322924 GGTAATTCAGGC-TTGGGCACTTCAGGAACTTTA
1 GGCAATTCTGGCTTTGGTAAC-TCAGGAACTTTA
* *
48322957 GGAAATTCTGGCTTTGGTAACTCCGGAACTTT
1 GGCAATTCTGGCTTTGGTAACTCAGGAACTTT
48322989 TGGTGCTTCA
Statistics
Matches: 108, Mismatches: 21, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
32 6 0.06
33 96 0.89
34 6 0.06
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (33 bp):
GGCAATTCTGGCTTTGGTAACTCAGGAACTTTA
Found at i:48322891 original size:99 final size:99
Alignment explanation
Indices: 48322788--48322991 Score: 218
Period size: 99 Copynumber: 2.1 Consensus size: 99
48322778 GTGATTCAGG
* * * * *
48322788 TTTTGGCAACTCGGGAGCTTTGGGTAATTC-AG-GC-TTGGGCAATTCTGGCTTAGGTAAC-TCG
1 TTTTGGCAACTC---AGCTTTGGGCAACTCGAGAGCTTTGGGCAATTCAGGCTT-GGGAACTTCA
*
48322849 GGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAAC
62 GGAACTTTAGGAAATTCTGGCTTTGGTAACTCAGGAAC
* * * * * * *
48322887 TTTTGGTAATTCAGGTTTTGGCAACTCGGGAGCTTTGGGTAATTCAGGCTTGGGCACTTCAGGAA
1 TTTTGGCAACTCAGCTTTGGGCAACTCGAGAGCTTTGGGCAATTCAGGCTTGGGAACTTCAGGAA
*
48322952 CTTTAGGAAATTCTGGCTTTGGTAACTCCGGAAC
66 CTTTAGGAAATTCTGGCTTTGGTAACTCAGGAAC
48322986 TTTTGG
1 TTTTGG
48322992 TGCTTCAGAT
Statistics
Matches: 87, Mismatches: 14, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
96 11 0.13
97 1 0.01
98 6 0.07
99 69 0.79
ACGTcount: A:0.21, C:0.17, G:0.29, T:0.33
Consensus pattern (99 bp):
TTTTGGCAACTCAGCTTTGGGCAACTCGAGAGCTTTGGGCAATTCAGGCTTGGGAACTTCAGGAA
CTTTAGGAAATTCTGGCTTTGGTAACTCAGGAAC
Found at i:48322999 original size:66 final size:66
Alignment explanation
Indices: 48322828--48322988 Score: 189
Period size: 66 Copynumber: 2.4 Consensus size: 66
48322818 AGGCTTGGGC
* * * * *
48322828 AATTCTGGCTTAGGTAACTCGGGAACTTTAGGCAATTCTGGCTTTGGTAACTCAGGAACTTTTGG
1 AATTCTGGCTTTGGTAACTCGGGAACTTTAGGTAATTCAGGCTTTGGGAACTCAGGAACTTTAGG
*
48322893 T
66 A
* * * * * *
48322894 AATTCAGGTTTTGGCAACTCGGGAGCTTTGGGTAATTCAGGC-TTGGGCACTTCAGGAACTTTAG
1 AATTCTGGCTTTGGTAACTCGGGAACTTTAGGTAATTCAGGCTTTGGGAAC-TCAGGAACTTTAG
48322958 GA
65 GA
*
48322960 AATTCTGGCTTTGGTAACTCCGGAACTTT
1 AATTCTGGCTTTGGTAACTCGGGAACTTT
48322989 TGGTGCTTCA
Statistics
Matches: 77, Mismatches: 17, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
65 6 0.08
66 71 0.92
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (66 bp):
AATTCTGGCTTTGGTAACTCGGGAACTTTAGGTAATTCAGGCTTTGGGAACTCAGGAACTTTAGG
A
Done.