Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 171 of 173
Found at i:51553003 original size:23 final size:24
Alignment explanation
Indices: 51552977--51553029 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 24
51552967 TTATAAGGAA
*
51552977 TTTTATTTC-TTCCA-TATAATTTT
1 TTTTATCTCTTTCCATTAT-ATTTT
*
51553000 TTTT-TCTCTTTTCATTATATTTT
1 TTTTATCTCTTTCCATTATATTTT
51553023 TTTTATC
1 TTTTATC
51553030 ATTTTCTTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
22 3 0.12
23 17 0.68
24 5 0.20
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (24 bp):
TTTTATCTCTTTCCATTATATTTT
Found at i:51560341 original size:21 final size:21
Alignment explanation
Indices: 51560315--51560355 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
51560305 AGACGAGCAA
* *
51560315 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
51560336 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
51560356 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:51563139 original size:31 final size:30
Alignment explanation
Indices: 51563104--51563161 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
51563094 TTTTTTAGTT
51563104 AAATTTAG-CAGTCAATCTTTTAAAAAGAGTA
1 AAATTTAGCCA-TCAA-CTTTTAAAAAGAGTA
* *
51563135 AAATTTGGCCATCCACTTTTAAAAAGA
1 AAATTTAGCCATCAACTTTTAAAAAGA
51563162 ATTTAATTGC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 12 0.50
31 10 0.42
32 2 0.08
ACGTcount: A:0.43, C:0.14, G:0.12, T:0.31
Consensus pattern (30 bp):
AAATTTAGCCATCAACTTTTAAAAAGAGTA
Found at i:51564032 original size:53 final size:52
Alignment explanation
Indices: 51563973--51564081 Score: 164
Period size: 53 Copynumber: 2.0 Consensus size: 52
51563963 ACACACGCAC
*
51563973 AAAAAAATTAGTGCATACCAAGTGTTTGAATAAATACTCTCAAAAGTATTATTT
1 AAAAAAAATAGT--ATACCAAGTGTTTGAATAAATACTCTCAAAAGTATTATTT
* *
51564027 AAAAAAAAATAGTATACCAAGTGTTTGAGTAAATGCTCTCAAAAGTATTATTT
1 -AAAAAAAATAGTATACCAAGTGTTTGAATAAATACTCTCAAAAGTATTATTT
51564080 AA
1 AA
51564082 CTCAAGAATA
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
52 2 0.04
53 38 0.75
55 11 0.22
ACGTcount: A:0.46, C:0.10, G:0.12, T:0.32
Consensus pattern (52 bp):
AAAAAAAATAGTATACCAAGTGTTTGAATAAATACTCTCAAAAGTATTATTT
Found at i:51565935 original size:20 final size:20
Alignment explanation
Indices: 51565910--51565951 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
51565900 ACTGTACAAG
51565910 AAGAATCCATTTAGAAGTTT
1 AAGAATCCATTTAGAAGTTT
51565930 AAGAATCCATTTAGAAGTTT
1 AAGAATCCATTTAGAAGTTT
51565950 AA
1 AA
51565952 TTCCTTTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (20 bp):
AAGAATCCATTTAGAAGTTT
Found at i:51567599 original size:36 final size:36
Alignment explanation
Indices: 51567547--51567656 Score: 202
Period size: 36 Copynumber: 3.1 Consensus size: 36
51567537 AAAAATCTTC
*
51567547 TCCGTAGTACTTGCATCATTGATTCGGTTTTTGAAT
1 TCCGAAGTACTTGCATCATTGATTCGGTTTTTGAAT
51567583 TCCGAAGTACTTGCATCATTGATTCGGTTTTTGAAT
1 TCCGAAGTACTTGCATCATTGATTCGGTTTTTGAAT
*
51567619 TCCGAAGTACTTGCATCATTGAATCGGTTTTTGAAT
1 TCCGAAGTACTTGCATCATTGATTCGGTTTTTGAAT
51567655 TC
1 TC
51567657 TTTCCTTACT
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 72 1.00
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.42
Consensus pattern (36 bp):
TCCGAAGTACTTGCATCATTGATTCGGTTTTTGAAT
Found at i:51579534 original size:25 final size:25
Alignment explanation
Indices: 51579505--51579580 Score: 104
Period size: 25 Copynumber: 3.1 Consensus size: 25
51579495 TTGAGATTTC
51579505 CAATCTATTATATTTGATGTCTCAA
1 CAATCTATTATATTTGATGTCTCAA
*
51579530 CAATCTATTATATTTGA-GCTTTC--
1 CAATCTATTATATTTGATG-TCTCAA
*
51579553 CAACCTATTATATTTGATGTCTCAA
1 CAATCTATTATATTTGATGTCTCAA
51579578 CAA
1 CAA
51579581 CCTCGGCTCC
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
23 19 0.43
24 2 0.05
25 23 0.52
ACGTcount: A:0.32, C:0.18, G:0.08, T:0.42
Consensus pattern (25 bp):
CAATCTATTATATTTGATGTCTCAA
Found at i:51579564 original size:23 final size:22
Alignment explanation
Indices: 51579494--51579569 Score: 89
Period size: 23 Copynumber: 3.2 Consensus size: 22
51579484 GTGAAGTCAT
51579494 TTTGAGATTTCCAATCTATTATA
1 TTTGAG-TTTCCAATCTATTATA
*
51579517 TTTGATGTCTCAACAATCTATTATA
1 TTTGA-GTTTC--CAATCTATTATA
*
51579542 TTTGAGCTTTCCAACCTATTATA
1 TTTGAG-TTTCCAATCTATTATA
51579565 TTTGA
1 TTTGA
51579570 TGTCTCAACA
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
23 24 0.52
24 2 0.04
25 20 0.43
ACGTcount: A:0.29, C:0.16, G:0.09, T:0.46
Consensus pattern (22 bp):
TTTGAGTTTCCAATCTATTATA
Found at i:51583123 original size:21 final size:21
Alignment explanation
Indices: 51583091--51583131 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
51583081 AGGCTCGAGG
51583091 GGCCTGTTTTAGGCC-ATACAA
1 GGCCTGTTTTA-GCCTATACAA
51583112 GGCCT-TTCTTAGCCTATACA
1 GGCCTGTT-TTAGCCTATACA
51583132 CCAAATGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
20 5 0.28
21 13 0.72
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.32
Consensus pattern (21 bp):
GGCCTGTTTTAGCCTATACAA
Found at i:51590811 original size:13 final size:14
Alignment explanation
Indices: 51590793--51590825 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
51590783 AAGGAGTAGG
51590793 GGGTTT-GGATTTA
1 GGGTTTGGGATTTA
51590806 GGGTTTGGGATTTA
1 GGGTTTGGGATTTA
*
51590820 AGGTTT
1 GGGTTT
51590826 AGAGGTTAGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 6 0.33
14 12 0.67
ACGTcount: A:0.15, C:0.00, G:0.39, T:0.45
Consensus pattern (14 bp):
GGGTTTGGGATTTA
Found at i:51590913 original size:20 final size:20
Alignment explanation
Indices: 51590884--51590928 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
51590874 GATTTGGAGT
* *
51590884 TTAGGGTTTCAAGGGTCAGG
1 TTAGGATTTCAAGGGTCAAG
51590904 TTAGGATTTCAAGGGTCAAG
1 TTAGGATTTCAAGGGTCAAG
51590924 TTAGG
1 TTAGG
51590929 GTTTAAGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.24, C:0.09, G:0.36, T:0.31
Consensus pattern (20 bp):
TTAGGATTTCAAGGGTCAAG
Found at i:51591281 original size:19 final size:20
Alignment explanation
Indices: 51591257--51591299 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
51591247 AAATATAAGA
51591257 AAAAATAAAATAAAAAAA-T
1 AAAAATAAAATAAAAAAACT
*
51591276 AAAAATGAAATAAAAAAACT
1 AAAAATAAAATAAAAAAACT
51591296 AAAA
1 AAAA
51591300 TTTATACATG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.14
Consensus pattern (20 bp):
AAAAATAAAATAAAAAAACT
Found at i:51593764 original size:23 final size:23
Alignment explanation
Indices: 51593738--51593790 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
51593728 ATAAGTGCCA
51593738 CACTGATACGTAGCCGAAGCTAC
1 CACTGATACGTAGCCGAAGCTAC
* *
51593761 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATACGTAGCCGAAGCTAC
51593784 CACTGAT
1 CACTGAT
51593791 CAATAACACT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.32, C:0.28, G:0.21, T:0.19
Consensus pattern (23 bp):
CACTGATACGTAGCCGAAGCTAC
Found at i:51596830 original size:40 final size:40
Alignment explanation
Indices: 51596749--51596830 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 40
51596739 AAATCCATTT
* * * * *
51596749 ATAATAACGTAATTTTTTATTTAAATTTATATATAATTCA
1 ATAACAACGTAATTTTGTATTTAAATTTAAATAAAAATCA
* *
51596789 ATAACAACTTAATTTTGTGTTTAAATTTAAATAAAAATCA
1 ATAACAACGTAATTTTGTATTTAAATTTAAATAAAAATCA
51596829 AT
1 AT
51596831 CTTATAATAT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.45, C:0.06, G:0.04, T:0.45
Consensus pattern (40 bp):
ATAACAACGTAATTTTGTATTTAAATTTAAATAAAAATCA
Found at i:51603781 original size:18 final size:18
Alignment explanation
Indices: 51603760--51603810 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
51603750 AGATACAGAA
*
51603760 ACAGGTACAGATGTAAAT
1 ACAGATACAGATGTAAAT
* **
51603778 ACAGATACAAATACAAAT
1 ACAGATACAGATGTAAAT
51603796 ACAGATACAGATGTA
1 ACAGATACAGATGTA
51603811 TTTATCCTAC
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.20
Consensus pattern (18 bp):
ACAGATACAGATGTAAAT
Found at i:51603785 original size:6 final size:6
Alignment explanation
Indices: 51603749--51603807 Score: 55
Period size: 6 Copynumber: 9.8 Consensus size: 6
51603739 CGCAACAAAT
* * * * * * *
51603749 CAGATA CAGAAA CAGGTA CAGATG TAAATA CAGATA CAAATA CAAATA
1 CAGATA CAGATA CAGATA CAGATA CAGATA CAGATA CAGATA CAGATA
51603797 CAGATA CAGAT
1 CAGATA CAGAT
51603808 GTATTTATCC
Statistics
Matches: 41, Mismatches: 12, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.53, C:0.15, G:0.15, T:0.17
Consensus pattern (6 bp):
CAGATA
Found at i:51610053 original size:23 final size:23
Alignment explanation
Indices: 51610023--51610070 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
51610013 GGACTAATGG
51610023 TTTAAATCTGCTTCTCCACTGTA
1 TTTAAATCTGCTTCTCCACTGTA
51610046 TTTAAATCTGCTTCTCCACTGTA
1 TTTAAATCTGCTTCTCCACTGTA
51610069 TT
1 TT
51610071 GGGAAGATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.21, C:0.25, G:0.08, T:0.46
Consensus pattern (23 bp):
TTTAAATCTGCTTCTCCACTGTA
Found at i:51610616 original size:88 final size:88
Alignment explanation
Indices: 51610431--51613053 Score: 4403
Period size: 88 Copynumber: 29.8 Consensus size: 88
51610421 ACCGTTAATA
* * *
51610431 CAGGAAGGCAAGAT-TTGTTGTCTTCAACTAGCTCTATAACAACCGAGAGAGGCAAGG-TT-TGT
1 CAGGAAGGCAAGATCTT-TTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGT
* * **
51610493 CTTTGATCTGCTTCATTGTCAATG
65 CTTCGACCTGCTTCGCTGTCAATG
* * * *
51610517 CAGGAAGGCAAGATCTGTTGTCTTCAACCAGTTCC-GCTACAACCGAGAGAGGAAAGGTTTGTGT
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATC-ACAACCGAGAGAGGCAAGGTTTGTGT
51610581 CTTCGACCTGCTTCGCTGTCAATG
65 CTTCGACCTGCTTCGCTGTCAATG
* * * *
51610605 TAGGAAGGCAAGATCTTTTGCCTTCAACTAGCTCCACCACAACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
51610670 TTCGACCTGCTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
** * * * * *
51610693 CAAAAAGGCACGATCTGTTGTCTTCAACCAGCTCCACCACAACCTAGAGAGGCAAGGTTTGTGTA
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
* *
51610758 TTTGACCTGCTTCACTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
* *
51610781 CAGGAATGCAAGATCTTTTGTCTTCAACTAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
51610846 TTCGACCTGCTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
51610869 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
*
51610934 TTCAACCTGCTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
* * *
51610957 TAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCGTCACAACCGAGAGAGGCAAGGTTTGTGTT
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
51611022 TTCGACCTGCTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
* * *
51611045 CAGGAAGGCAAGATCTTTTATCTTCAACCAGCTCCATCAGAACCGAGAAAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
* *
51611110 TTCGACCTGCTTTGCTGTTAATG
66 TTCGACCTGCTTCGCTGTCAATG
51611133 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
51611198 TTCGACCTGCTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
* * *
51611221 CTGGAAGGCAAGATCTTTTTTCTTCAACCAGCTCCATCACAACCGAGAGAGGTAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
*
51611286 TTCGACCTGCTTCACTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
* * *
51611309 CAGGAAGGAAAGATCTTTTGTCTTCAACCAGCTCCATCACAATCGAGAGAGGAAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
51611374 TTCGACCTGCTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
* * *
51611397 CAAGAAGGCAAGATTTTTTTGTCTTCAACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTGTGT
1 CAGGAAGGCAAGA-TCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGT
51611462 CTTCGACCTGCTTCGCTGTCAATG
65 CTTCGACCTGCTTCGCTGTCAATG
*
51611486 TAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
51611551 TTCGACCTGCTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
* * *
51611574 TAGGAAGGCAAGATCTTTTGTTTTCAACCAGCTCCATCACAATCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
51611639 TTCGACCTGCTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
* * *
51611662 CAGAAAGGCAAGATCTTTTATCTTCAACCAGCTCCATCACAACCGAGAAAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
51611727 TTCGACCTGCTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
51611750 CAGGAAGGCAAGATC--TTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
*
51611813 TTCGACCTACTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
*
51611836 CCGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
*
51611901 TTCGACCTGCTTCGCTGTCAATA
66 TTCGACCTGCTTCGCTGTCAATG
51611924 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
51611989 TTCGACCTGCTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
* *
51612012 CAGAAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAATCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
*
51612077 TTCGACCTACTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
* * * *
51612100 CCGGAAGACAAGATCTTTTATTTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
*
51612165 TTCGACCTGCTTCGCTGTCAATA
66 TTCGACCTGCTTCGCTGTCAATG
51612188 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
* *
51612253 TTTGACCTGCTTCGTTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
51612276 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
51612341 TTCGACCTGCTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
*
51612364 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACTACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
*
51612429 TTCGACCTACTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
*
51612452 CCGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
*
51612517 TTCGACCTGCTTCGCTGTCAATA
66 TTCGACCTGCTTCGCTGTCAATG
* *
51612540 CAGGAAGGCAAAATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGTGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
*
51612605 TTTGACCTGCTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
* * *
51612628 TAGGAAGGCAAGATCTTTTTTCTTCAACCAGCTCCATCACAACCAAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
*
51612693 TTCGATCTGCTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
* * *
51612716 CAGGAAGGCAAGATCTTTTGTCTTCAACTAGCTCCATCACAACCGAGAGAGGCAAAGTTTATGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
51612781 TTCGACCTGCTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
* * *
51612804 CAAGAAGGCAAGATTTTTTTGTCTTCAACCAGCTCCACCACAACCGAGAGAGGCAAGGTTTGTGT
1 CAGGAAGGCAAGA-TCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGT
51612869 CTTCGACCTGCTTCGCTGTCAATG
65 CTTCGACCTGCTTCGCTGTCAATG
*
51612893 TAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
51612958 TTCGACCTGCTTCGCTGTCAATG
66 TTCGACCTGCTTCGCTGTCAATG
* *
51612981 TAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCAAGAGAGGCAAGGTTTGTGTC
1 CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
51613046 TTCGACCT
66 TTCGACCT
51613054 TCACTGATCT
Statistics
Matches: 2375, Mismatches: 153, Indels: 16
0.93 0.06 0.01
Matches are distributed among these distances:
86 129 0.05
87 3 0.00
88 2079 0.88
89 164 0.07
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (88 bp):
CAGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAGAGAGGCAAGGTTTGTGTC
TTCGACCTGCTTCGCTGTCAATG
Found at i:51614146 original size:21 final size:21
Alignment explanation
Indices: 51614120--51614166 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
51614110 AGTATAGCAA
51614120 GATCACCACATGCCCCGA-TCT
1 GATCACCACATGCCCC-ATTCT
**
51614141 GATCACTTCATGCCCCATTCT
1 GATCACCACATGCCCCATTCT
51614162 GATCA
1 GATCA
51614167 ATATTTGAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.23, C:0.38, G:0.13, T:0.26
Consensus pattern (21 bp):
GATCACCACATGCCCCATTCT
Found at i:51614277 original size:16 final size:16
Alignment explanation
Indices: 51614258--51614290 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
51614248 CCATTTTTAC
51614258 TTTTTAATTTTTTTCA
1 TTTTTAATTTTTTTCA
*
51614274 TTTTTCATTTTTTTCA
1 TTTTTAATTTTTTTCA
51614290 T
1 T
51614291 CATTTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.15, C:0.09, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTTTAATTTTTTTCA
Found at i:51615162 original size:18 final size:18
Alignment explanation
Indices: 51615139--51615182 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
51615129 TGACTTTGAT
51615139 TTTTTTTTGATTTTTTAA
1 TTTTTTTTGATTTTTTAA
*
51615157 TTTTTTTTGATTTTTTGA
1 TTTTTTTTGATTTTTTAA
51615175 TTTTTTTT
1 TTTTTTTT
51615183 TTGAGTCTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.11, C:0.00, G:0.07, T:0.82
Consensus pattern (18 bp):
TTTTTTTTGATTTTTTAA
Found at i:51615170 original size:7 final size:8
Alignment explanation
Indices: 51615141--51615180 Score: 53
Period size: 8 Copynumber: 4.8 Consensus size: 8
51615131 ACTTTGATTT
51615141 TTTTTTGA
1 TTTTTTGA
*
51615149 TTTTTTAA
1 TTTTTTGA
51615157 TTTTTTTTGA
1 --TTTTTTGA
51615167 TTTTTTGA
1 TTTTTTGA
51615175 TTTTTT
1 TTTTTT
51615181 TTTTGAGTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 21 0.75
10 7 0.25
ACGTcount: A:0.12, C:0.00, G:0.07, T:0.80
Consensus pattern (8 bp):
TTTTTTGA
Found at i:51615864 original size:11 final size:11
Alignment explanation
Indices: 51615848--51615872 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
51615838 CCTACTGTAG
51615848 GTACAAAGAAT
1 GTACAAAGAAT
51615859 GTACAAAGAAT
1 GTACAAAGAAT
51615870 GTA
1 GTA
51615873 TGAATTTAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.08, G:0.20, T:0.20
Consensus pattern (11 bp):
GTACAAAGAAT
Found at i:51617251 original size:19 final size:20
Alignment explanation
Indices: 51617227--51617270 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
51617217 TATGAAAAAC
* *
51617227 TAATGCATATG-ATGCAATG
1 TAATGCAAATGCATGAAATG
51617246 TAATGCAAATGCATGAAATG
1 TAATGCAAATGCATGAAATG
51617266 -AATGC
1 TAATGC
51617271 CTAAAGAGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.41, C:0.11, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAAATGCATGAAATG
Found at i:51622864 original size:106 final size:106
Alignment explanation
Indices: 51622679--51622897 Score: 411
Period size: 106 Copynumber: 2.1 Consensus size: 106
51622669 AAATTAATGG
*
51622679 GGTTTAAGGGTTAAAATGGAAGGGATGATAAACAAACAAAAAGGGACTAGGCTCAAAGGGGTTTA
1 GGTTTAAGGGTTAAAATGGAAGGGATGATAAACAAACAAAAAGGGACTAGGCTCAAAAGGGTTTA
51622744 TTAGTGGGCAATGAAATGGGTAGGCTATTTAAATGTTAAAT
66 TTAGTGGGCAATGAAATGGGTAGGCTATTTAAATGTTAAAT
* *
51622785 GGTTTAATGGTTAAAATGGAAGGGATGATAAACAAACAAAAAGGGATTAGGCTCAAAAGGGTTTA
1 GGTTTAAGGGTTAAAATGGAAGGGATGATAAACAAACAAAAAGGGACTAGGCTCAAAAGGGTTTA
51622850 TTAGTGGGCAATGAAATGGGTAGGCTATTTAAATGTTAAAT
66 TTAGTGGGCAATGAAATGGGTAGGCTATTTAAATGTTAAAT
51622891 GGTTTAA
1 GGTTTAA
51622898 ATCCTAAGTG
Statistics
Matches: 110, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
106 110 1.00
ACGTcount: A:0.39, C:0.06, G:0.28, T:0.27
Consensus pattern (106 bp):
GGTTTAAGGGTTAAAATGGAAGGGATGATAAACAAACAAAAAGGGACTAGGCTCAAAAGGGTTTA
TTAGTGGGCAATGAAATGGGTAGGCTATTTAAATGTTAAAT
Found at i:51623942 original size:207 final size:197
Alignment explanation
Indices: 51623672--51624144 Score: 587
Period size: 207 Copynumber: 2.3 Consensus size: 197
51623662 TAAATATTTG
** *
51623672 ATATATAAA-AATTATATAT-AAAAAATTAGTTGATGTTTTTAAAAAATAAAAAATATATAACAT
1 ATATATAAAGAAAAATATATCAAAAAATTAGTTGATGTTTTTAAAAAATAAATAAT-T-TAACAT
*
51623735 AATGATACACATGAATATATTTTCA-CTATATCCACAATGCAAGTGAAAAAA-AATAATGATATT
64 AATGATACACATGAATATATATTCATC-ATATCCACAATGCAAGTGAAAAAATAATAA-G--ATT
* * * * * *
51623798 TGAAATAATTATTTTTATAATATTAGAATTTATGTTACCCACAATGTATGTAAAAACAATTTTTT
125 TGAAATAATTAATTTTAT-ATATTAGAATTTACGATACCCACAATGTACGTAAAAA-AA-ATATT
51623863 TGACATAAAAA
187 TGACATAAAAA
* *
51623874 TTTATTTATAAAGAAAAATATATCAAAATATTAGTTGATGTTTTT-AAAAATACATATAAGTTTA
1 ---ATATATAAAGAAAAATATATCAAAAAATTAGTTGATGTTTTTAAAAAATA-A-ATAA-TTTA
* * * *
51623938 ACATAATGATACATATGACTATATATTCATCATATCCATAATGTAAGTGAAAAAATAATAAGATT
60 ACATAATGATACACATGAATATATATTCATCATATCCACAATGCAAGTGAAAAAATAATAAGATT
51624003 TGAAATAATTAATTTTATATATTAGAATTTACGATACCCACAATGTACGTAAAAAAAATATTTGA
125 TGAAATAATTAATTTTATATATTAGAATTTACGATACCCACAATGTACGTAAAAAAAATATTTGA
51624068 CATAAAAA
190 CATAAAAA
* *
51624076 ATATATAAATAAAAATATATCAAAAAAATTAGTTGTTGTTTTTAAAAAATAAAATATATTTAACA
1 ATATATAAAGAAAAATATATC-AAAAAATTAGTTGATGTTTTTAAAAAAT-AAATA-ATTTAACA
51624141 TAAT
63 TAAT
51624145 TATATATAAA
Statistics
Matches: 237, Mismatches: 20, Indels: 27
0.83 0.07 0.10
Matches are distributed among these distances:
199 19 0.08
200 33 0.14
201 8 0.03
202 15 0.06
203 2 0.01
204 34 0.14
205 28 0.12
206 15 0.06
207 72 0.30
208 10 0.04
209 1 0.00
ACGTcount: A:0.49, C:0.07, G:0.07, T:0.36
Consensus pattern (197 bp):
ATATATAAAGAAAAATATATCAAAAAATTAGTTGATGTTTTTAAAAAATAAATAATTTAACATAA
TGATACACATGAATATATATTCATCATATCCACAATGCAAGTGAAAAAATAATAAGATTTGAAAT
AATTAATTTTATATATTAGAATTTACGATACCCACAATGTACGTAAAAAAAATATTTGACATAAA
AA
Found at i:51624101 original size:12 final size:13
Alignment explanation
Indices: 51624052--51624104 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 13
51624042 ACAATGTACG
*
51624052 TAAAAAAAATATT
1 TAAAAAAAATATA
51624065 TGACATAAAAAATATA
1 T-A-A-AAAAAATATA
51624081 TAAATAAAAATATA
1 TAAA-AAAAATATA
*
51624095 TCAAAAAAAT
1 TAAAAAAAAT
51624105 TAGTTGTTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
13 8 0.24
14 14 0.41
15 2 0.06
16 10 0.29
ACGTcount: A:0.68, C:0.04, G:0.02, T:0.26
Consensus pattern (13 bp):
TAAAAAAAATATA
Found at i:51625387 original size:16 final size:16
Alignment explanation
Indices: 51625354--51625387 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
51625344 CCCCTTTGTT
* *
51625354 AACATTAATGGGAGAC
1 AACATTAATGGCAAAC
51625370 AACATTAATGGCAAAC
1 AACATTAATGGCAAAC
51625386 AA
1 AA
51625388 TACAAAGTGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.15, G:0.18, T:0.18
Consensus pattern (16 bp):
AACATTAATGGCAAAC
Found at i:51628212 original size:21 final size:21
Alignment explanation
Indices: 51628186--51628226 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
51628176 AGACGAGCAA
* *
51628186 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
51628207 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
51628227 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:51632013 original size:19 final size:20
Alignment explanation
Indices: 51631991--51632028 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
51631981 AAAATCACTC
*
51631991 TTTAAAAAGAA-AATTTTGA
1 TTTAAAAAAAATAATTTTGA
51632010 TTTAAAAAAAATAATTTTG
1 TTTAAAAAAAATAATTTTG
51632029 GGTACGATAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 10 0.59
20 7 0.41
ACGTcount: A:0.53, C:0.00, G:0.08, T:0.39
Consensus pattern (20 bp):
TTTAAAAAAAATAATTTTGA
Found at i:51636622 original size:11 final size:11
Alignment explanation
Indices: 51636595--51636637 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
51636585 TGACCTTTCC
51636595 AAGGTATGGG-
1 AAGGTATGGGA
*
51636605 TAGGTATGGGA
1 AAGGTATGGGA
*
51636616 AAGGTATGGGC
1 AAGGTATGGGA
51636627 AAGGTATGGGA
1 AAGGTATGGGA
51636638 TATATTCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:51636634 original size:22 final size:21
Alignment explanation
Indices: 51636595--51636637 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
51636585 TGACCTTTCC
*
51636595 AAGGTATGGGTAGGTATGGGA
1 AAGGTATGGGAAGGTATGGGA
51636616 AAGGTATGGGCAAGGTATGGGA
1 AAGGTATGGG-AAGGTATGGGA
51636638 TATATTCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (21 bp):
AAGGTATGGGAAGGTATGGGA
Found at i:51640560 original size:18 final size:18
Alignment explanation
Indices: 51640537--51640589 Score: 79
Period size: 18 Copynumber: 2.9 Consensus size: 18
51640527 CCAACTACTG
*
51640537 TATACGTGAACAGTACCA
1 TATACGTGAATAGTACCA
**
51640555 TATACGTGAATAGTACTG
1 TATACGTGAATAGTACCA
51640573 TATACGTGAATAGTACC
1 TATACGTGAATAGTACC
51640590 GTAAACGGTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28
Consensus pattern (18 bp):
TATACGTGAATAGTACCA
Found at i:51641152 original size:11 final size:11
Alignment explanation
Indices: 51641125--51641167 Score: 61
Period size: 11 Copynumber: 4.0 Consensus size: 11
51641115 TGACCTTTCC
51641125 AAGGTATGGG-
1 AAGGTATGGGA
*
51641135 TAGGTATGGGA
1 AAGGTATGGGA
*
51641146 AAGGTATGGGC
1 AAGGTATGGGA
51641157 AAGGTATGGGA
1 AAGGTATGGGA
51641168 TATATTCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
10 9 0.32
11 19 0.68
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (11 bp):
AAGGTATGGGA
Found at i:51641164 original size:22 final size:21
Alignment explanation
Indices: 51641125--51641167 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
51641115 TGACCTTTCC
*
51641125 AAGGTATGGGTAGGTATGGGA
1 AAGGTATGGGAAGGTATGGGA
51641146 AAGGTATGGGCAAGGTATGGGA
1 AAGGTATGGG-AAGGTATGGGA
51641168 TATATTCTAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.30, C:0.02, G:0.47, T:0.21
Consensus pattern (21 bp):
AAGGTATGGGAAGGTATGGGA
Found at i:51643113 original size:19 final size:20
Alignment explanation
Indices: 51643077--51643123 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
51643067 AATTTTTTTC
*
51643077 TATAAAATACATATACAAAAT
1 TATAAAATACA-ATACAAAAA
51643098 TATAAAATAC-ATACAAAAA
1 TATAAAATACAATACAAAAA
51643117 TATAAAA
1 TATAAAA
51643124 ATGTTTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 15 0.60
21 10 0.40
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (20 bp):
TATAAAATACAATACAAAAA
Found at i:51643125 original size:20 final size:21
Alignment explanation
Indices: 51643077--51643123 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
51643067 AATTTTTTTC
*
51643077 TATAAAATACATATACAAAAT
1 TATAAAATACATACACAAAAT
51643098 TATAAAATACATACA-AAAA-
1 TATAAAATACATACACAAAAT
51643117 TATAAAA
1 TATAAAA
51643124 ATGTTTATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 7 0.28
20 4 0.16
21 14 0.56
ACGTcount: A:0.66, C:0.09, G:0.00, T:0.26
Consensus pattern (21 bp):
TATAAAATACATACACAAAAT
Found at i:51656999 original size:21 final size:21
Alignment explanation
Indices: 51656973--51657013 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
51656963 AGACGAGCAA
* *
51656973 TACTCCACAGCAGGTGGAGTG
1 TACTCCAAAACAGGTGGAGTG
51656994 TACTCCAAAACAGGTGGAGT
1 TACTCCAAAACAGGTGGAGT
51657014 TTGAGCAGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (21 bp):
TACTCCAAAACAGGTGGAGTG
Found at i:51667639 original size:29 final size:29
Alignment explanation
Indices: 51667607--51667669 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 29
51667597 ATTTAGGACC
* *
51667607 AAATTTAGCTCAAGAAAAGAATAAGGGTT
1 AAATTTAGCTCAAAAAAAGAATAAGGGCT
51667636 AAATTTAGCTCAAAAAAAGAATAAGGGCT
1 AAATTTAGCTCAAAAAAAGAATAAGGGCT
51667665 AAATT
1 AAATT
51667670 GATAAAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.51, C:0.08, G:0.17, T:0.24
Consensus pattern (29 bp):
AAATTTAGCTCAAAAAAAGAATAAGGGCT
Found at i:51667747 original size:28 final size:29
Alignment explanation
Indices: 51667693--51667751 Score: 102
Period size: 28 Copynumber: 2.1 Consensus size: 29
51667683 TATACATAAA
*
51667693 TACTAAGGGCTAATTTTTTTTATTATGCC
1 TACTAAGGGCTAATTTTTGTTATTATGCC
51667722 TACTAAGGGCTAA-TTTTGTTATTATGCC
1 TACTAAGGGCTAATTTTTGTTATTATGCC
51667750 TA
1 TA
51667752 ATGAAAATTA
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
28 16 0.55
29 13 0.45
ACGTcount: A:0.25, C:0.14, G:0.15, T:0.46
Consensus pattern (29 bp):
TACTAAGGGCTAATTTTTGTTATTATGCC
Found at i:51668152 original size:16 final size:16
Alignment explanation
Indices: 51668131--51668161 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
51668121 ATTTAATATA
51668131 TATATTTGATTAAAAG
1 TATATTTGATTAAAAG
51668147 TATATTTGATTAAAA
1 TATATTTGATTAAAA
51668162 ATAAAAAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.10, T:0.45
Consensus pattern (16 bp):
TATATTTGATTAAAAG
Found at i:51677604 original size:19 final size:19
Alignment explanation
Indices: 51677580--51677616 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
51677570 TTATTCTAAA
51677580 ATTTATCTACCTAAATAAG
1 ATTTATCTACCTAAATAAG
51677599 ATTTATCTACCTAAATAA
1 ATTTATCTACCTAAATAA
51677617 CTTTAAAATA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.16, G:0.03, T:0.38
Consensus pattern (19 bp):
ATTTATCTACCTAAATAAG
Found at i:51680709 original size:72 final size:72
Alignment explanation
Indices: 51680599--51680804 Score: 286
Period size: 72 Copynumber: 2.9 Consensus size: 72
51680589 TAATCAGAGT
* * * *
51680599 TCCAACAACTCGTCCTTAGAAGTAATAAATATTAATATTTTAAATAGATATAGTCAAAATAATAT
1 TCCAACAACTAGTCCTTGGAAGTAATAAATATTAATATTTTAAATAAATATAGCCAAAATAATAT
51680664 AATGAGG
66 AATGAGG
* ** *
51680671 TCCAACAACTTGTGGTTGGAAGTAATAAATATTAATATTTTAAATAAATGTAGCCAAAATAATAT
1 TCCAACAACTAGTCCTTGGAAGTAATAAATATTAATATTTTAAATAAATATAGCCAAAATAATAT
* * *
51680736 ATTTATG
66 AATGAGG
* **
51680743 TCCAACAACTAGTCCTTGGATGTAATAAATATTAATATTTTAAATAAACGTAGCCAAAATAA
1 TCCAACAACTAGTCCTTGGAAGTAATAAATATTAATATTTTAAATAAATATAGCCAAAATAA
51680805 AATCCAACAA
Statistics
Matches: 119, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
72 119 1.00
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.33
Consensus pattern (72 bp):
TCCAACAACTAGTCCTTGGAAGTAATAAATATTAATATTTTAAATAAATATAGCCAAAATAATAT
AATGAGG
Found at i:51681550 original size:20 final size:20
Alignment explanation
Indices: 51681513--51681552 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
51681503 TTGTTTTCCG
**
51681513 TATTATATAATTTTAATTAA
1 TATTATATAATTAAAATTAA
*
51681533 TATTTTATAATTAAAATTAA
1 TATTATATAATTAAAATTAA
51681553 AAATTTATGT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (20 bp):
TATTATATAATTAAAATTAA
Found at i:51681676 original size:40 final size:40
Alignment explanation
Indices: 51681632--51681713 Score: 137
Period size: 40 Copynumber: 2.0 Consensus size: 40
51681622 AAATCTATTT
* * *
51681632 ATAACAACTTAATTTTTTATTTAAATTTATATATAATTCA
1 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
51681672 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
1 ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
51681712 AT
1 AT
51681714 CTTATAATAT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.45, C:0.07, G:0.01, T:0.46
Consensus pattern (40 bp):
ATAACAACTTAATTTTGTATTTAAATTTAAATATAAATCA
Found at i:51691968 original size:73 final size:73
Alignment explanation
Indices: 51691849--51692107 Score: 500
Period size: 73 Copynumber: 3.5 Consensus size: 73
51691839 TATTATTATT
*
51691849 TGGATGTAATGATGTAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
51691914 ATTTTAAG
66 ATTTTAAG
*
51691922 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGATGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
51691987 ATTTTAAG
66 ATTTTAAG
51691995 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
51692060 ATTTTAAG
66 ATTTTAAG
51692068 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
1 TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTT
51692108 GTCAAGTTGT
Statistics
Matches: 183, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 183 1.00
ACGTcount: A:0.28, C:0.06, G:0.25, T:0.41
Consensus pattern (73 bp):
TGGATGTAATGATGAAACTTAGTTGTATTCCAACTAAGTTTGTTAGTGGTAGTAGGTGGTGATTT
ATTTTAAG
Found at i:51692744 original size:18 final size:18
Alignment explanation
Indices: 51692718--51692763 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
51692708 CAGAAACATG
*
51692718 TACAGATGTAAATACGGA
1 TACAGATGTAAATACAGA
* *
51692736 TACAAATGTAAATATAGA
1 TACAGATGTAAATACAGA
51692754 TACAGATGTA
1 TACAGATGTA
51692764 TTTATCCTAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.48, C:0.09, G:0.17, T:0.26
Consensus pattern (18 bp):
TACAGATGTAAATACAGA
Found at i:51694736 original size:18 final size:18
Alignment explanation
Indices: 51694708--51694751 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
51694698 AACCTATTAT
51694708 AATTGTTTTTTGA-ATTTTG
1 AATT-TTTTTT-ATATTTTG
*
51694727 AATTTTTTTTATTTTTTG
1 AATTTTTTTTATATTTTG
51694745 AATTTTT
1 AATTTTT
51694752 AAATTAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 1 0.04
18 18 0.78
19 4 0.17
ACGTcount: A:0.20, C:0.00, G:0.09, T:0.70
Consensus pattern (18 bp):
AATTTTTTTTATATTTTG
Found at i:51701603 original size:18 final size:18
Alignment explanation
Indices: 51701580--51701672 Score: 123
Period size: 18 Copynumber: 5.2 Consensus size: 18
51701570 CCCAACTACT
*
51701580 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
51701598 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
*
51701616 ATATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
* * * *
51701634 ATATACATAAATAGTGCC
1 GTATACGTGAATAGTACC
51701652 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
51701670 GTA
1 GTA
51701673 AACGGTCGTA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 64 1.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.27
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:51701632 original size:36 final size:36
Alignment explanation
Indices: 51701581--51701672 Score: 139
Period size: 36 Copynumber: 2.6 Consensus size: 36
51701571 CCAACTACTG
* * *
51701581 TATACGTGAACAGTACCGTATACGTGAATAGTGCCA
1 TATACGTGAATAGTACCGTATACATAAATAGTGCCA
* *
51701617 TATACGTGAATAGTACCATATACATAAATAGTGCCG
1 TATACGTGAATAGTACCGTATACATAAATAGTGCCA
51701653 TATACGTGAATAGTACCGTA
1 TATACGTGAATAGTACCGTA
51701673 AACGGTCGTA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 50 1.00
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (36 bp):
TATACGTGAATAGTACCGTATACATAAATAGTGCCA
Found at i:51706892 original size:73 final size:73
Alignment explanation
Indices: 51706765--51706922 Score: 298
Period size: 73 Copynumber: 2.2 Consensus size: 73
51706755 AAATCACAAT
*
51706765 TTCATAAGGAATATCACGATTCCACAACCACTTCCAATCAAAGTGAAGTGTAGTTTCTATGCCTT
1 TTCATAAGGAATATCACGATTCCACAACCACTTCCAATCAAAGTGAAGTATAGTTTCTATGCCTT
51706830 CATATGAA
66 CATATGAA
*
51706838 TTCATAAGGAATATCACGATTCCACAACCACTTCCAATCAAAGTTAAGTATAGTTTCTATGCCTT
1 TTCATAAGGAATATCACGATTCCACAACCACTTCCAATCAAAGTGAAGTATAGTTTCTATGCCTT
51706903 CATATGAA
66 CATATGAA
51706911 TTCATAAGGAAT
1 TTCATAAGGAAT
51706923 TTAGGGTTTA
Statistics
Matches: 83, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
73 83 1.00
ACGTcount: A:0.35, C:0.21, G:0.13, T:0.31
Consensus pattern (73 bp):
TTCATAAGGAATATCACGATTCCACAACCACTTCCAATCAAAGTGAAGTATAGTTTCTATGCCTT
CATATGAA
Found at i:51710630 original size:52 final size:52
Alignment explanation
Indices: 51710567--51710670 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
51710557 TTGTATAAAT
51710567 GTCATGTATGTGTATATAATTTACCTCATATCCGATAATTCCTGATAAATGA
1 GTCATGTATGTGTATATAATTTACCTCATATCCGATAATTCCTGATAAATGA
51710619 GTCATGTATGTGTATATAATTTACCTCATATCCGATAATTCCTGATAAATGA
1 GTCATGTATGTGTATATAATTTACCTCATATCCGATAATTCCTGATAAATGA
51710671 ATAAGTCCCA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.38
Consensus pattern (52 bp):
GTCATGTATGTGTATATAATTTACCTCATATCCGATAATTCCTGATAAATGA
Found at i:51712483 original size:43 final size:42
Alignment explanation
Indices: 51712416--51712545 Score: 174
Period size: 43 Copynumber: 3.0 Consensus size: 42
51712406 CATAGGATTT
51712416 TCGATATGTGTTATCGTGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGTTA-CGTGTAAGACCACGTCTGGGACGTTGGCA
**
51712459 TCGACT-TGTGTTTACGTGTAAGACC-CTGTCTGGGACAATGGCA
1 TCGA-TATGTG-TTACGTGTAAGACCAC-GTCTGGGACGTTGGCA
*
51712502 TCGATATGTGATTACATGTAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTG-TTACGTGTAAGACCACGTCTGGGACGTTGGCA
51712545 T
1 T
51712546 TGTACGAGTC
Statistics
Matches: 76, Mismatches: 6, Indels: 10
0.83 0.07 0.11
Matches are distributed among these distances:
42 2 0.03
43 69 0.91
44 5 0.07
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (42 bp):
TCGATATGTGTTACGTGTAAGACCACGTCTGGGACGTTGGCA
Found at i:51718769 original size:33 final size:33
Alignment explanation
Indices: 51718731--51718799 Score: 95
Period size: 33 Copynumber: 2.1 Consensus size: 33
51718721 AAATATATTG
* *
51718731 ATATTTGTAATAGTTATTTGAAAT-ATTTCACAT
1 ATATTTGAAATAATTATTTGAAATAATTT-ACAT
*
51718764 ATATTTGAAATAATTTTTTGAAATAATTTACAT
1 ATATTTGAAATAATTATTTGAAATAATTTACAT
51718797 ATA
1 ATA
51718800 AAATCAATAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
33 28 0.88
34 4 0.12
ACGTcount: A:0.41, C:0.04, G:0.07, T:0.48
Consensus pattern (33 bp):
ATATTTGAAATAATTATTTGAAATAATTTACAT
Found at i:51718785 original size:13 final size:13
Alignment explanation
Indices: 51718767--51718792 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
51718757 TTCACATATA
51718767 TTTGAAATAATTT
1 TTTGAAATAATTT
51718780 TTTGAAATAATTT
1 TTTGAAATAATTT
51718793 ACATATAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
TTTGAAATAATTT
Found at i:51719443 original size:12 final size:13
Alignment explanation
Indices: 51719413--51719447 Score: 52
Period size: 14 Copynumber: 2.6 Consensus size: 13
51719403 TATTTGACAT
51719413 AAAAAATATATAA
1 AAAAAATATATAA
*
51719426 AGAAAAATATATCA
1 A-AAAAATATATAA
51719440 AAAAAATA
1 AAAAAATA
51719448 GTTGATGTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
13 8 0.40
14 12 0.60
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.20
Consensus pattern (13 bp):
AAAAAATATATAA
Found at i:51728395 original size:17 final size:17
Alignment explanation
Indices: 51728373--51728406 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51728363 ATCCACTAAT
*
51728373 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
51728390 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
51728407 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:51733025 original size:17 final size:17
Alignment explanation
Indices: 51733003--51733036 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
51732993 ATCCACTAAT
*
51733003 CCACTACCACCAACAAC
1 CCACTACCAACAACAAC
51733020 CCACTACCAACAACAAC
1 CCACTACCAACAACAAC
51733037 AATCCACTAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.44, C:0.50, G:0.00, T:0.06
Consensus pattern (17 bp):
CCACTACCAACAACAAC
Found at i:51735233 original size:25 final size:24
Alignment explanation
Indices: 51735175--51735233 Score: 57
Period size: 25 Copynumber: 2.3 Consensus size: 24
51735165 CAGATGGCCA
**
51735175 AAAGTAAAAAAATCTAGATATTTTT
1 AAAG-AAAAAAATCTAGATATTCCT
51735200 AAAGTAAAAAAATCTAGATATAATCCT
1 AAAG-AAAAAAATCTAGATAT--TCCT
51735227 AAA-AAAA
1 AAAGAAAA
51735234 GGCACCGATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
25 25 0.83
27 5 0.17
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.27
Consensus pattern (24 bp):
AAAGAAAAAAATCTAGATATTCCT
Found at i:51735528 original size:17 final size:14
Alignment explanation
Indices: 51735504--51735551 Score: 53
Period size: 14 Copynumber: 3.2 Consensus size: 14
51735494 TTTTTTGTTT
51735504 TTTGTTCTTTTTCC
1 TTTGTTCTTTTTCC
51735518 TGTTGTCTTCTTTGTT-C
1 T-TTG--TTCTTT-TTCC
51735535 TTTGTTCTTTTTCC
1 TTTGTTCTTTTTCC
51735549 TTT
1 TTT
51735552 TTTTGATTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
13 2 0.07
14 11 0.38
15 3 0.10
16 3 0.10
17 8 0.28
18 2 0.07
ACGTcount: A:0.00, C:0.19, G:0.10, T:0.71
Consensus pattern (14 bp):
TTTGTTCTTTTTCC
Found at i:51739569 original size:17 final size:20
Alignment explanation
Indices: 51739528--51739572 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 20
51739518 TTTTTTTTTC
51739528 TATAAAATACATATACAAAAT
1 TATAAAATACA-ATACAAAAT
51739549 TATAAAATAC-ATA-AAAA-
1 TATAAAATACAATACAAAAT
51739566 TATAAAA
1 TATAAAA
51739573 ATATTTATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.29
18 4 0.17
19 3 0.12
21 10 0.42
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.27
Consensus pattern (20 bp):
TATAAAATACAATACAAAAT
Found at i:51744351 original size:27 final size:26
Alignment explanation
Indices: 51744304--51744360 Score: 62
Period size: 27 Copynumber: 2.2 Consensus size: 26
51744294 AATATATTAT
* *
51744304 TTTTAATTAATTAAGCATGAAATATGA
1 TTTTAATAAATTAAGCATGAAA-ATCA
*
51744331 TTTTAATAAAATTAAG-TTGAAAATCA
1 TTTTAAT-AAATTAAGCATGAAAATCA
51744357 TTTT
1 TTTT
51744361 TCCATTGCTA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
26 7 0.27
27 12 0.46
28 7 0.27
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.44
Consensus pattern (26 bp):
TTTTAATAAATTAAGCATGAAAATCA
Found at i:51757728 original size:21 final size:21
Alignment explanation
Indices: 51757686--51757737 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
51757676 AAGTTTTTTT
* *
51757686 TTTATAAAATACATATACAAA
1 TTTATAAAATACATACAAAAA
*
51757707 TTTATAAAATGCATACAAAAA
1 TTTATAAAATACATACAAAAA
*
51757728 TATA-AAAATA
1 TTTATAAAATA
51757738 TTTATAAATA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 5 0.19
21 21 0.81
ACGTcount: A:0.60, C:0.08, G:0.02, T:0.31
Consensus pattern (21 bp):
TTTATAAAATACATACAAAAA
Found at i:51761095 original size:18 final size:18
Alignment explanation
Indices: 51761058--51761096 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
51761048 TCACCTTAGC
* * *
51761058 TTTATTTTGTTTTTGCGT
1 TTTATTTTCTTTATGAGT
51761076 TTTATTTTCTTTATGAGT
1 TTTATTTTCTTTATGAGT
51761094 TTT
1 TTT
51761097 TAAATTTTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.10, C:0.05, G:0.13, T:0.72
Consensus pattern (18 bp):
TTTATTTTCTTTATGAGT
Found at i:51775223 original size:18 final size:19
Alignment explanation
Indices: 51775200--51775237 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
51775190 GGAAGCAAGC
*
51775200 AATGATTGAAGA-AATCAG
1 AATGATTGAAAAGAATCAG
51775218 AATGATTGAAAAGAATCAG
1 AATGATTGAAAAGAATCAG
51775237 A
1 A
51775238 CCTGGAGTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.53, C:0.05, G:0.21, T:0.21
Consensus pattern (19 bp):
AATGATTGAAAAGAATCAG
Found at i:51778764 original size:75 final size:75
Alignment explanation
Indices: 51778649--51778863 Score: 358
Period size: 75 Copynumber: 2.9 Consensus size: 75
51778639 TGAATGGATC
*
51778649 TTCGGTTCCTCAGAATGGAGTAGATATTAGTCCAAAAAGTACTAATTCTCATAGTATTCCCTCTT
1 TTCGGTTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTCATAGTATTCCCTCTT
51778714 TAAATGGGTA
66 TAAATGGGTA
* *
51778724 TTCGGCTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTTATAGTATTCCCTCTT
1 TTCGGTTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTCATAGTATTCCCTCTT
51778789 TAAATGGGTA
66 TAAATGGGTA
* * * * *
51778799 TTCGGTTCCTCAAAATGAAGTAGATATTAGTCCAACAAATACTAACTCTCATAGTATTCCTTCTT
1 TTCGGTTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTCATAGTATTCCCTCTT
51778864 ATTCTGGTGA
Statistics
Matches: 130, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 130 1.00
ACGTcount: A:0.31, C:0.19, G:0.15, T:0.35
Consensus pattern (75 bp):
TTCGGTTCCTCAGAATGGAGTAGATATTAGTCCAACAAGTACTAATTCTCATAGTATTCCCTCTT
TAAATGGGTA
Found at i:51786938 original size:18 final size:17
Alignment explanation
Indices: 51786915--51786981 Score: 98
Period size: 18 Copynumber: 3.8 Consensus size: 17
51786905 TTGCGAGGCG
*
51786915 CCGGGTCCGATGGCAGAC
1 CCGGGTCCGATGGCTG-C
51786933 CCGGGTCCGATGGCTGCC
1 CCGGGTCCGATGGCTG-C
51786951 CCGGGTCCGATGGCTGC
1 CCGGGTCCGATGGCTGC
51786968 CCTGGGTCCGATGG
1 CC-GGGTCCGATGG
51786982 AAGCCCCACC
Statistics
Matches: 46, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
17 3 0.07
18 43 0.93
ACGTcount: A:0.09, C:0.34, G:0.40, T:0.16
Consensus pattern (17 bp):
CCGGGTCCGATGGCTGC
Found at i:51790266 original size:43 final size:43
Alignment explanation
Indices: 51790184--51790562 Score: 512
Period size: 43 Copynumber: 8.9 Consensus size: 43
51790174 TAAAAGTCAT
* *
51790184 GACCTTTAGCGGCGC-TTTCCCACAAACGCCGCTATAGACCAC
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
* * *
51790226 GACCTTTAGCGGTGCTTTTTCCACAAACGCCGTTAAAGACCAG
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
*
51790269 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAT
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
* * * *
51790312 GACCTTTAGTGGCGCTTTTTCCACAAACACCGCTAAAGACCAT
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
* * *
51790355 GACCTTTAGCGGCACTTTTTCCACAAACGCCGCAAAAGACCAG
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
*
51790398 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAT
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
*
51790441 GACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCAG
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
* * * *
51790484 GACCTTCAGCGGCGCTTTCCCCACAAACGCCGCTATAGAACA-
1 GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
* * * * *
51790526 AACTTTTAGCGACGC-TTCCCGCAAAAACGCCGCTAAA
1 GACCTTTAGCGGCGCTTTTCC-CACAAACGCCGCTAAA
51790563 AACATATCAT
Statistics
Matches: 301, Mismatches: 34, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
41 5 0.02
42 39 0.13
43 257 0.85
ACGTcount: A:0.27, C:0.34, G:0.19, T:0.21
Consensus pattern (43 bp):
GACCTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCAG
Found at i:51794057 original size:3 final size:3
Alignment explanation
Indices: 51793999--51794048 Score: 57
Period size: 3 Copynumber: 16.7 Consensus size: 3
51793989 TTTGTTAACT
* *
51793999 TTA TTA TTA TTA TTA TTA TTA TTA TTA TCA TCT- TTA CTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA
*
51794044 GTA TT
1 TTA TT
51794049 GGTATTATTG
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
2 1 0.03
3 38 0.97
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:51794129 original size:22 final size:23
Alignment explanation
Indices: 51794082--51794130 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
51794072 ATCTCTATTC
*
51794082 ATATATACTTATGTATTTTCAAAT
1 ATATATACTTATGTATTATC-AAT
51794106 ATATATATCTTAT-TATTATC-AT
1 ATATATA-CTTATGTATTATCAAT
51794128 ATA
1 ATA
51794131 AGTGCTTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 5 0.22
24 13 0.57
25 5 0.22
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51
Consensus pattern (23 bp):
ATATATACTTATGTATTATCAAT
Found at i:51807049 original size:41 final size:41
Alignment explanation
Indices: 51807000--51807499 Score: 223
Period size: 41 Copynumber: 11.7 Consensus size: 41
51806990 CGGATTAAAG
* * *
51807000 GATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCA
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCACATCA
* *
51807041 GATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCAAAGAT-A
1 GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATC--ACATCA
* * * * *
51807083 GTAATCCTATCTCCTTG-AGATTACAATGGAGCGGATTA-A--A
1 G--ATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATCACATCA
* * * *
51807123 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
1 -GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCACATCA
* * * *
51807165 GGTCTTATCTCCCTG-AGATTACAGTGGAACAGACCGAAGAATTGCA
1 GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATC--A-CA-T-CA
* * * *
51807211 GATCTTGTCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAT-A
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATC--ACATCA
* * * * * *
51807253 TAATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAA
1 -GATCTTATCTCCCTGAAGTTACAGTGGAGCAGA-TCACAT-CA
* * * *
51807297 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCA
1 -GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCACATCA
* * * * * *
51807339 GGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGCA
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATC--A-CA-T-CA
* *
51807385 GATCTTATC-CCCTGAAGTTACAGTGGAGCAGATTGAAGCCA-GA
1 GATCTTATCTCCCTGAAGTTACAGTGGAGCAGA-T-CA--CATCA
* * *
51807428 GATCTTATCTCCCCG-AGATTACAGCGGAGCAGATCGA-AGACA
1 GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATC-ACA-TCA
* *
51807470 CTATCCTATCTCCCTGAAGTTACAGTGGAG
1 -GATCTTATCTCCCTGAAGTTACAGTGGAG
51807500 TGGGTTAAAA
Statistics
Matches: 346, Mismatches: 77, Indels: 70
0.70 0.16 0.14
Matches are distributed among these distances:
39 23 0.07
40 9 0.03
41 87 0.25
42 10 0.03
43 69 0.20
44 80 0.23
45 24 0.07
46 43 0.12
47 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.27
Consensus pattern (41 bp):
GATCTTATCTCCCTGAAGTTACAGTGGAGCAGATCACATCA
Found at i:51807136 original size:124 final size:124
Alignment explanation
Indices: 51806937--51807197 Score: 477
Period size: 124 Copynumber: 2.1 Consensus size: 124
51806927 TCCTGCATTA
51806937 ACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAGGA
1 ACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAGGA
51807002 TCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGATCTTATCTCCCTGAGATT
66 TCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGATCTTATCTCCCTGAGATT
51807061 ACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAGGA
1 ACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAGGA
* * *
51807126 TCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATT
66 TCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGATCTTATCTCCCTGAGATT
* *
51807185 ACAGTGGAACAGA
1 ACAGCGGAGCAGA
51807198 CCGAAGAATT
Statistics
Matches: 132, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
124 132 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (124 bp):
ACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTACAATGGAGCGGATTAAAGGA
TCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGATCTTATCTCCCTGAGATT
Found at i:51807315 original size:44 final size:44
Alignment explanation
Indices: 51806998--51807538 Score: 227
Period size: 44 Copynumber: 12.6 Consensus size: 44
51806988 AGCGGATTAA
* * * * *
51806998 AGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGA-TCACAT-C
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC
* *
51807040 A-GATCTTATCTCCCTG-AGATTACAGCGGAGCAGATCAAAGAT--
1 AGGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAA-ATAC
* * * * *
51807082 AGTAATCCTATCTCCTTG-AGATTACAATGGAGCGGATT---A-A-
1 AG-GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATAC
* * * ***
51807122 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA-TCGCAT-C
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC
* ** *
51807164 AGG-TCTTATCTCCCTG-AGATTACAGTGGAACAGACCGAAGAATTGC
1 AGGATCTTATCTCCCTGAAG-TTACAGTGGAGCAGA-TTAA-AA-TAC
* * * * * *
51807210 A-GATCTTGTCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAT
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGAT-TAAAATAC
* * *
51807254 A--ATCCTATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAA
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC
* * * ***
51807296 AGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGA-TCGCAT-C
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC
* * * ** *
51807338 AGG-TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTGC
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGA-TTAA-AA-TAC
* **
51807384 A-GATCTTATC-CCCTGAAGTTACAGTGGAGCAGATT-GAAGCC
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC
* * ** *
51807425 AGAGATCTTATCTCCCCG-AGATTACAGCGGAGCAGA-TCGAAGAC
1 AG-GATCTTATCTCCCTGAAG-TTACAGTGGAGCAGATTAAAATAC
** * ** * *
51807469 ACTATCCTATCTCCCTGAAGTTACAGTGGAGTGGGTTAAAATAA
1 AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC
* *
51807513 AGGATCTTATCTCTCTGAGGTTACAG
1 AGGATCTTATCTCCCTGAAGTTACAG
51807539 CAGAGTAGGC
Statistics
Matches: 374, Mismatches: 89, Indels: 70
0.70 0.17 0.13
Matches are distributed among these distances:
38 1 0.00
39 22 0.06
40 9 0.02
41 82 0.22
42 17 0.05
43 68 0.18
44 110 0.29
45 25 0.07
46 39 0.10
47 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (44 bp):
AGGATCTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAATAC
Found at i:51807327 original size:174 final size:170
Alignment explanation
Indices: 51807039--51807450 Score: 589
Period size: 174 Copynumber: 2.4 Consensus size: 170
51807029 AAGATCACAT
* * *
51807039 CAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGAT
1 CAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAGTAATCCTATCTCCCTGAGAT
51807104 TACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
66 TACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
51807169 TTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTG
131 TTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTG
*
51807209 CAGATCTTGTCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATA-TAATCCTATCTCCCTGA-AG
1 CAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAGTAATCCTATCTCCCTGAGA-
*
51807272 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
65 TTACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCAT
* * **
51807337 CAGGTCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGAATTG
125 CAGGTCTTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTG
* * * ** * *
51807383 CAGATCTTATC-CCCTGAAGTTACAGTGGAGCAGATTGAAGCCAG-AGATCTTATCTCCCCGAGA
1 CAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAGTA-ATCCTATCTCCCTGAGA
51807446 TTACA
65 TTACA
51807451 GCGGAGCAGA
Statistics
Matches: 216, Mismatches: 17, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
168 1 0.00
169 30 0.14
170 42 0.19
173 28 0.13
174 114 0.53
175 1 0.00
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (170 bp):
CAGATCTTATCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATAGTAATCCTATCTCCCTGAGAT
TACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTC
TTATCTCCCTGAGATTACAGTGGAACAGACCGAAGAATTG
Found at i:51807389 original size:87 final size:87
Alignment explanation
Indices: 51807124--51807495 Score: 321
Period size: 87 Copynumber: 4.3 Consensus size: 87
51807114 CGGATTAAAG
* * *
51807124 GATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCCCTGAGATTACAG
1 GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAG
*
51807189 TGGAACAGACCGAAGAATTGCA
66 TGGAGCAGACCGAAGAATTGCA
* * ** * ** * *
51807211 GATCTTGTCTCCCTGAGGTTACAGCGGAGCAGATCGAAGAT-ATAATCCTATCTCCCTGAAGTTA
1 GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCG--CATCA-GGTCTTATCTCCCTGAGGTTA
* ** **
51807275 CAGTGGAGCGGA-TTAA-AA-TAAA
63 CAGTGGAGCAGACCGAAGAATTGCA
* * *
51807297 GGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGGTCTTATCTCTCTGAGGTTACA
1 -GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGCATCAGGTCTTATCTCCCTGAGGTTACA
*
51807362 GTGGAGTAGACCGAAGAATTGCA
65 GTGGAGCAGACCGAAGAATTGCA
* * * * * *
51807385 GATCTTATC-CCCTGAAGTTACAGTGGAGCAGATTGAAGCCAGAGATCTTATCTCCCCGAGATTA
1 GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGCA-TCAG-G-TCTTATCTCCCTGAGGTTA
* *
51807449 CAGCGGAGCAGATCGAAG-A---CA
63 CAGTGGAGCAGACCGAAGAATTGCA
* *
51807470 CTATCCTATCTCCCTGAAGTTACAGT
1 -GATCTTATCTCCCTGAAGTTACAGT
51807496 GGAGTGGGTT
Statistics
Matches: 222, Mismatches: 50, Indels: 26
0.74 0.17 0.09
Matches are distributed among these distances:
85 30 0.14
86 35 0.16
87 91 0.41
88 7 0.03
89 59 0.27
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (87 bp):
GATCTTATCTCCCTGAAGTTACAGTAGAGCAGATCGCATCAGGTCTTATCTCCCTGAGGTTACAG
TGGAGCAGACCGAAGAATTGCA
Found at i:51807462 original size:130 final size:128
Alignment explanation
Indices: 51807213--51807463 Score: 276
Period size: 130 Copynumber: 1.9 Consensus size: 128
51807203 GAATTGCAGA
* *
51807213 TCTTGTCTCCCTGAGGTTACAGCGGAGCAGATCGAAGATATAATCCTATCTCCCTGAAGTTACAG
1 TCTTATCTCCCTGAGGTTACAGCGGAGCAGACCGAAGATATAATCCTATCTCCCTGAAGTTACAG
* * * * * *
51807278 TGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGTAGATCGCATCAGG
66 TGGAGCAGATTAAAACAAAGGATCTTATCTCCCCGAAGTTACAGCAGAGCAGATCGCATCAGG
* * * *
51807341 TCTTATCTCTCTGAGGTTACAGTGGAGTAGACCGAAGA-ATTGCAGATCTTATC-CCCTGAAGTT
1 TCTTATCTCCCTGAGGTTACAGCGGAGCAGACCGAAGATA-T--A-ATCCTATCTCCCTGAAGTT
* * * *
51807404 ACAGTGGAGCAGATTGAAGC-CAGAGATCTTATCTCCCCG-AGATTACAGCGGAGCAGATCG
62 ACAGTGGAGCAGATTAAAACAAAG-GATCTTATCTCCCCGAAG-TTACAGCAGAGCAGATCG
51807464 AAGACACTAT
Statistics
Matches: 101, Mismatches: 16, Indels: 10
0.80 0.13 0.08
Matches are distributed among these distances:
127 1 0.01
128 34 0.34
129 4 0.04
130 55 0.54
131 7 0.07
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (128 bp):
TCTTATCTCCCTGAGGTTACAGCGGAGCAGACCGAAGATATAATCCTATCTCCCTGAAGTTACAG
TGGAGCAGATTAAAACAAAGGATCTTATCTCCCCGAAGTTACAGCAGAGCAGATCGCATCAGG
Found at i:51808902 original size:3 final size:3
Alignment explanation
Indices: 51808847--51808893 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
51808837 TTTGTTAACT
* * *
51808847 TTA TTA TTA TTA TTA TTA TTA TTA TCA TCT- TTA CTA TTA TTA GTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA
51808892 TT
1 TT
51808894 GGTATTATTG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
2 1 0.03
3 35 0.97
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:51808974 original size:22 final size:23
Alignment explanation
Indices: 51808927--51808975 Score: 57
Period size: 24 Copynumber: 2.1 Consensus size: 23
51808917 ATCTCTATTC
*
51808927 ATATATACTTATGTATTTTCAAAT
1 ATATATACTTATGTATTATC-AAT
51808951 ATATATATCTTAT-TATTATC-AT
1 ATATATA-CTTATGTATTATCAAT
51808973 ATA
1 ATA
51808976 AGTGCTTGTA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
22 5 0.22
24 13 0.57
25 5 0.22
ACGTcount: A:0.39, C:0.08, G:0.02, T:0.51
Consensus pattern (23 bp):
ATATATACTTATGTATTATCAAT
Found at i:51812497 original size:21 final size:23
Alignment explanation
Indices: 51812469--51812524 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 23
51812459 CCCTAAATCA
*
51812469 TAAACCCTAAATCTC-TAACTCT
1 TAAACCCTAAATCTCTTAACACT
*
51812491 T-AACCCTTAA-CTCTTAACACT
1 TAAACCCTAAATCTCTTAACACT
*
51812512 TAAACCTTAAATC
1 TAAACCCTAAATC
51812525 CCTACCCTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 5
0.75 0.11 0.14
Matches are distributed among these distances:
20 3 0.11
21 15 0.56
22 8 0.30
23 1 0.04
ACGTcount: A:0.38, C:0.30, G:0.00, T:0.32
Consensus pattern (23 bp):
TAAACCCTAAATCTCTTAACACT
Found at i:51812521 original size:14 final size:14
Alignment explanation
Indices: 51812484--51812514 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
51812474 CCTAAATCTC
*
51812484 TAACTCTTAACCCT
1 TAACTCTTAACACT
51812498 TAACTCTTAACACT
1 TAACTCTTAACACT
51812512 TAA
1 TAA
51812515 ACCTTAAATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.35, C:0.29, G:0.00, T:0.35
Consensus pattern (14 bp):
TAACTCTTAACACT
Found at i:51812819 original size:8 final size:7
Alignment explanation
Indices: 51812784--51812938 Score: 91
Period size: 7 Copynumber: 21.7 Consensus size: 7
51812774 ACTAGTTAAT
51812784 CTAAACC
1 CTAAACC
51812791 CTAAACC
1 CTAAACC
51812798 CTAAA-C
1 CTAAACC
*
51812804 TTAAACC
1 CTAAACC
51812811 CTAAAACC
1 CT-AAACC
51812819 CTAAACC
1 CTAAACC
51812826 CATAAACC
1 C-TAAACC
* * *
51812834 CTTAGCA
1 CTAAACC
51812841 C-ATAACC
1 CTA-AACC
51812848 TCTAAACC
1 -CTAAACC
*
51812856 TTAAACC
1 CTAAACC
*
51812863 C-CAACC
1 CTAAACC
*
51812869 TTTAAACC
1 -CTAAACC
*
51812877 ATAAACC
1 CTAAACC
*
51812884 ATAAACC
1 CTAAACC
*
51812891 ATAAACC
1 CTAAACC
*
51812898 ATAAACC
1 CTAAACC
* *
51812905 ATAACCC
1 CTAAACC
51812912 CTAAACC
1 CTAAACC
*
51812919 CATAATCC
1 C-TAAACC
*
51812927 ATAAACC
1 CTAAACC
*
51812934 TTAAA
1 CTAAA
51812939 ATGGTAACAC
Statistics
Matches: 118, Mismatches: 21, Indels: 18
0.75 0.13 0.11
Matches are distributed among these distances:
6 9 0.08
7 80 0.68
8 28 0.24
9 1 0.01
ACGTcount: A:0.46, C:0.35, G:0.01, T:0.19
Consensus pattern (7 bp):
CTAAACC
Found at i:51813338 original size:41 final size:40
Alignment explanation
Indices: 51813170--51813385 Score: 238
Period size: 41 Copynumber: 5.3 Consensus size: 40
51813160 TAAATTATTT
* **
51813170 TAAATCCCTGAGCATTAGCGGCGCTTTTTAGAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTTACA-AAAACGCCGC
** * * * *
51813211 TAAA--AATAGAACATTTGCGGCGTTTTATAAAAACGCCGC
1 TAAAGCCCT-GAGCATTAGCGGCGCTTTACAAAAACGCCGC
*
51813250 TAAAAGCCCTGAGCATTAGTGGCGCTTTTAACAAAAACGCCGC
1 T-AAAGCCCTGAGCATTAGCGGCGC-TTT-ACAAAAACGCCGC
* *
51813293 TAAAGCACTGAGCATTAGCGGCGCTTCTCCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTT-TACAAAAACGCCGC
*
51813334 TAAAGCCCTGAGCATTAGCGGCGCTTTCTCAAAAACGCCGC
1 TAAAGCCCTGAGCATTAGCGGCGCTTT-ACAAAAACGCCGC
51813375 TAAAGCCCTGA
1 TAAAGCCCTGA
51813386 AAGCTCACAA
Statistics
Matches: 149, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
39 12 0.08
40 21 0.14
41 77 0.52
42 26 0.17
43 13 0.09
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (40 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTACAAAAACGCCGC
Found at i:51813349 original size:83 final size:81
Alignment explanation
Indices: 51813170--51813386 Score: 262
Period size: 83 Copynumber: 2.7 Consensus size: 81
51813160 TAAATTATTT
* * * *
51813170 TAAATCCCTGAGCATTAGCGGCGCTTTTTA-GAAAACGCCGCTAAA--AATAGAACATTTGCGGC
1 TAAAGCCCTGAGCATTAGCGGCGC-TTTTACAAAAACGCCGCTAAAGCACT-GAACATTAGCGGC
* *
51813232 GTTTTATAAAAACGCCGC
64 GTTCTACAAAAACGCCGC
* *
51813250 TAAAAGCCCTGAGCATTAGTGGCGCTTTTAACAAAAACGCCGCTAAAGCACTGAGCATTAGCGGC
1 T-AAAGCCCTGAGCATTAGCGGCGCTTTT-ACAAAAACGCCGCTAAAGCACTGAACATTAGCGGC
*
51813315 GCTTCTCCAAAAACGCCGC
64 G-TTCTACAAAAACGCCGC
*
51813334 TAAAGCCCTGAGCATTAGCGGCGCTTTCT-CAAAAACGCCGCTAAAGCCCTGAA
1 TAAAGCCCTGAGCATTAGCGGCGCTTT-TACAAAAACGCCGCTAAAGCACTGAA
51813387 AGCTCACAAA
Statistics
Matches: 118, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
80 5 0.04
81 22 0.19
82 36 0.31
83 37 0.31
84 18 0.15
ACGTcount: A:0.31, C:0.27, G:0.21, T:0.21
Consensus pattern (81 bp):
TAAAGCCCTGAGCATTAGCGGCGCTTTTACAAAAACGCCGCTAAAGCACTGAACATTAGCGGCGT
TCTACAAAAACGCCGC
Found at i:51813506 original size:40 final size:40
Alignment explanation
Indices: 51813422--51813550 Score: 163
Period size: 40 Copynumber: 3.2 Consensus size: 40
51813412 AAGGTTTTTT
* * * * *
51813422 GCGGCGCTTTCTGGAAAACGCCGCTAATGCTTG-TTTTTA
1 GCGGCGTTTTCCGAAAAACGCCGCTAATGCTCGATCTTTA
* * *
51813461 GCGGCGTTTTCCGTAAATCGCCGCTAATACTCGATCTTTA
1 GCGGCGTTTTCCGAAAAACGCCGCTAATGCTCGATCTTTA
51813501 GCGGCGTTTTCC-AAAAAGCGCCGCTAATGCTCGATCTTTA
1 GCGGCGTTTTCCGAAAAA-CGCCGCTAATGCTCGATCTTTA
51813541 GCGGCGTTTT
1 GCGGCGTTTT
51813551 TTATACAAAC
Statistics
Matches: 78, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 30 0.38
40 48 0.62
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.32
Consensus pattern (40 bp):
GCGGCGTTTTCCGAAAAACGCCGCTAATGCTCGATCTTTA
Found at i:51813574 original size:12 final size:12
Alignment explanation
Indices: 51813557--51813582 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51813547 TTTTTTATAC
51813557 AAACGCCGCTAA
1 AAACGCCGCTAA
51813569 AAACGCCGCTAA
1 AAACGCCGCTAA
51813581 AA
1 AA
51813583 GCCTGTTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:51824105 original size:12 final size:12
Alignment explanation
Indices: 51824088--51824113 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
51824078 ATGACCATAT
51824088 CATATAAAAACA
1 CATATAAAAACA
51824100 CATATAAAAACA
1 CATATAAAAACA
51824112 CA
1 CA
51824114 ACCTCACCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.65, C:0.19, G:0.00, T:0.15
Consensus pattern (12 bp):
CATATAAAAACA
Found at i:51831367 original size:19 final size:19
Alignment explanation
Indices: 51831340--51831381 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
51831330 AATTTATTTT
*
51831340 AAAATATTAAAAATTAGTA
1 AAAACATTAAAAATTAGTA
* *
51831359 AAAACATTAAAATTTTGTA
1 AAAACATTAAAAATTAGTA
51831378 AAAA
1 AAAA
51831382 TATATAATTA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.62, C:0.02, G:0.05, T:0.31
Consensus pattern (19 bp):
AAAACATTAAAAATTAGTA
Found at i:51832225 original size:18 final size:17
Alignment explanation
Indices: 51832170--51832227 Score: 55
Period size: 18 Copynumber: 3.3 Consensus size: 17
51832160 TAGAATGAAT
*
51832170 TTGGACTTTGACCATACC
1 TTGGACTTTGACC-TAAC
* *
51832188 TT-GACCTTGACCTTGAC
1 TTGGACTTTGACC-TAAC
51832205 TTGGACTTTGACCTAATC
1 TTGGACTTTGACCTAA-C
51832223 TTGGA
1 TTGGA
51832228 TCATTGGGCT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
17 15 0.47
18 17 0.53
ACGTcount: A:0.21, C:0.24, G:0.19, T:0.36
Consensus pattern (17 bp):
TTGGACTTTGACCTAAC
Found at i:51836771 original size:15 final size:15
Alignment explanation
Indices: 51836751--51836782 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
51836741 AACATCGTAC
51836751 TGTGTTTATTATGGT
1 TGTGTTTATTATGGT
51836766 TGTGTTTATTATGGT
1 TGTGTTTATTATGGT
51836781 TG
1 TG
51836783 CAGACATAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.28, T:0.59
Consensus pattern (15 bp):
TGTGTTTATTATGGT
Found at i:51837631 original size:66 final size:61
Alignment explanation
Indices: 51837460--51837999 Score: 394
Period size: 66 Copynumber: 8.3 Consensus size: 61
51837450 GAGAGAGAGG
51837460 GAGAAAACCCTTTATTTTAATAATTTCATTCATGAATTTCTAAACAAATATATGAAAAAAAAACA
1 GAGAAAACCC-TT-TTTTAATAATTTCATTCATGAATTTC-AAACAAATATATG--AAAAAAACA
51837525 A
61 A
*
51837526 GAGAAAACCCTTTTTGTAAAAATAATTTCATTCATGAATTTCAAAGCAAATATGTGAAAGAAAAT
1 GAGAAAACCCTTTTT-T---AATAATTTCATTCATGAATTTCAAA-CAAATATATG-AA-AAAA-
51837591 ACAA
58 ACAA
* * *
51837595 GAGAAAACCCTCTTTTTAGTAATTTTATTCATGAATTTCAGAACAAAGATATGAACAAAAACAA
1 GAGAAAACCCT-TTTTTAATAATTTCATTCATGAATTTCA-AACAAATATATGAA-AAAAACAA
51837659 GAGAAAACCTTCTTTTTTTAATAATTTCATTCATGAATTTCAAAACAAA-ATATG-AAAAAACAA
1 GAGAAAACC--C-TTTTTTAATAATTTCATTCATGAATTTC-AAACAAATATATGAAAAAAACAA
*
51837722 GAGAAAA-CCTTTTCTTAAAAATAATTTCATTCATGAATCTCAAAGCAAATATATGGAGAGAGAA
1 GAGAAAACCCTTTT-TT---AATAATTTCATTCATGAATTTCAAA-CAAATATAT-----GA-AA
*
51837786 AAAAGAGA
55 AAAACA-A
* *** * *
51837794 GAGAAAACCC--TTTTAAAAAAAGCATTCATGAAATTCAAAACAAATATATG-ATAAAACAA
1 GAGAAAACCCTTTTTTAATAATTTCATTCATGAATTTC-AAACAAATATATGAAAAAAACAA
* * * *
51837853 GAGAAATCCCTTTTTTGAAAAAAAAAAATTCATTCATGAATCTCAAAGCAAATATATGAAGAAAA
1 GAGAAAACCCTTTTTT------AATAATTTCATTCATGAATTTCAAA-CAAATATATG-A-AAAA
*
51837918 AAAAGA
57 AACA-A
* * ** * * *
51837924 GAGAAAACCC-TTTTAAAAAAAATCATTCATGAAATTCAGAACAAATATATG-ATAGAACAA
1 GAGAAAACCCTTTTTTAATAATTTCATTCATGAATTTCA-AACAAATATATGAAAAAAACAA
* *
51837984 GAGAAATCCTTTTTTT
1 GAGAAAACCCTTTTTT
51838000 TAAAAAAAAT
Statistics
Matches: 394, Mismatches: 36, Indels: 93
0.75 0.07 0.18
Matches are distributed among these distances:
59 14 0.04
60 18 0.05
61 13 0.03
62 5 0.01
63 40 0.10
64 51 0.13
65 16 0.04
66 74 0.19
67 63 0.16
68 38 0.10
69 17 0.04
70 16 0.04
71 19 0.05
72 8 0.02
73 2 0.01
ACGTcount: A:0.49, C:0.12, G:0.10, T:0.28
Consensus pattern (61 bp):
GAGAAAACCCTTTTTTAATAATTTCATTCATGAATTTCAAACAAATATATGAAAAAAACAA
Found at i:51837747 original size:63 final size:63
Alignment explanation
Indices: 51837478--51838021 Score: 421
Period size: 63 Copynumber: 8.3 Consensus size: 63
51837468 CCTTTATTTT
*
51837478 AATAATTTCATTCATGAATTTCTAAACAAATATATGAAAAAAAAACAAGAGAAAACCCTTTTTGT
1 AATAATTTCATTCATGAATTTCAAAACAAATATATG---AAAAAACAAGAGAAAA-CCTTTTT-T
51837543 AAA
61 AAA
* *
51837546 AATAATTTCATTCATGAATTTCAAAGCAAATATGTGAAAGAAAATACAAGAGAAAACCCTCTTTT
1 AATAATTTCATTCATGAATTTCAAAACAAATATATG--A-AAAA-ACAAGAGAAAA-CCT-TTTT
51837611 T---
60 TAAA
* * * * **
51837612 AGTAATTTTATTCATGAATTTCAGAACAAAGATATGAACAAAAACAAGAGAAAACCTTCTTTTTT
1 AATAATTTCATTCATGAATTTCAAAACAAATATATG-A-AAAAACAAGAGAAAACCTT-TTTTAA
*
51837677 T
63 A
51837678 AATAATTTCATTCATGAATTTCAAAACAAA-ATATGAAAAAACAAGAGAAAACCTTTTCTTAAA
1 AATAATTTCATTCATGAATTTCAAAACAAATATATGAAAAAACAAGAGAAAACCTTTT-TTAAA
* * * *
51837741 AATAATTTCATTCATGAATCTCAAAGCAAATATATGGAGAGAGAAAAAAGAGAGAGAAAACC-CT
1 AATAATTTCATTCATGAATTTCAAAACAAATATAT-------GAAAAAACA-AGAGAAAACCTTT
51837805 TTTAAA
58 TTTAAA
* * * *
51837811 AA-AA--GCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAATCCCTTTTTTGAAA
1 AATAATTTCATTCATGAATTTCAAAACAAATATATGAAAAAACAAGAGAAA-ACCTTTTTT---A
51837873 AA
62 AA
* * * * * *
51837875 AAAAAATTCATTCATGAATCTCAAAGCAAATATATGAAGAAAAAAAAGAGAGAAAACC-CTTTTA
1 AATAATTTCATTCATGAATTTCAAAACAAATATAT---GAAAAAACA-AGAGAAAACCTTTTTTA
51837939 AA
62 AA
* * * * * *
51837941 AA-AA-ATCATTCATGAAATTCAGAACAAATATATGATAGAACAAGAGAAATCCTTTTTTTTAAA
1 AATAATTTCATTCATGAATTTCAAAACAAATATATGAAAAAACAAGAGAAAACC--TTTTTTAAA
*
51838004 AA-AA-ATCATTCATGAATT
1 AATAATTTCATTCATGAATT
51838022 AGCTTTAAAA
Statistics
Matches: 397, Mismatches: 47, Indels: 69
0.77 0.09 0.13
Matches are distributed among these distances:
59 7 0.02
60 18 0.05
61 10 0.03
62 3 0.01
63 80 0.20
64 45 0.11
65 15 0.04
66 62 0.16
67 51 0.13
68 37 0.09
69 22 0.06
70 20 0.05
71 17 0.04
72 10 0.03
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (63 bp):
AATAATTTCATTCATGAATTTCAAAACAAATATATGAAAAAACAAGAGAAAACCTTTTTTAAA
Found at i:51837834 original size:130 final size:125
Alignment explanation
Indices: 51837460--51838020 Score: 465
Period size: 131 Copynumber: 4.3 Consensus size: 125
51837450 GAGAGAGAGG
* * * *
51837460 GAGAAAACCCTTTATTTTAATAATTTCATTCATGAATTTCTAAA-CAAATATATGAA-AAAAAAA
1 GAGAAAA-CCTTT-TTTAAAAAAATTCATTCATGAATCTC-AAAGCAAATATATGAAGAAAAAAA
** * * * *
51837523 CA-AGAGAAAACCCTTTTTGTAAAAATAATTTCATTCATGAATTTCAAAGCAAATATGTGAAAGA
63 -AGAGAGAAAACCC--TTT-TAAAAA-AA-AGCATTCATGAAATTCAAAACAAATATATG--A-T
51837587 AAATACAA
119 AAA-ACAA
** * * * * * *
51837595 GAGAAAACCCTCTTTTT-AGTAATTTTATTCATGAATTTCAGAA-CAAAGATATGAA-CAAAAAC
1 GAGAAAA-CCT-TTTTTAAAAAAATTCATTCATGAATCTCA-AAGCAAATATATGAAGAAAAAAA
* * *** * *
51837657 A-AGAGAAAACCTTCTTTTTTTAATAATTTCATTCATGAATTTCAAAACAAA-ATATGAAAAAAC
63 AGAGAGAAAACC--C--TTTTAAAAAAAAGCATTCATGAAATTCAAAACAAATATATGATAAAAC
51837720 AA
124 AA
51837722 GAGAAAACCTTTTCTTAAAAATAATTTCATTCATGAATCTCAAAGCAAATATATGGAGAGAGAAA
1 GAGAAAACCTTTT-TTAAAAA-AA-TTCATTCATGAATCTCAAAGCAAATATAT-GA-AGA-AAA
51837787 AAAGAGAGAGAAAACCCTTTT-AAAAAAAGCATTCATGAAATTCAAAACAAATATATGATAAAAC
60 AAA-AGAGAGAAAACCCTTTTAAAAAAAAGCATTCATGAAATTCAAAACAAATATATGATAAAAC
51837851 AA
124 AA
*
51837853 GAGAAATCCCTTTTTTGAAAAAAAAAAATTCATTCATGAATCTCAAAGCAAATATATGAAGAAAA
1 GAGAAA-ACCTTTTTT-----AAAAAAATTCATTCATGAATCTCAAAGCAAATATATGAAGAAAA
* * *
51837918 AAAAGAGAGAAAACCCTTTTAAAAAAAATCATTCATGAAATTCAGAACAAATATATGATAGAACA
60 AAAAGAGAGAAAACCCTTTTAAAAAAAAGCATTCATGAAATTCAAAACAAATATATGATAAAACA
51837983 A
125 A
* *
51837984 GAGAAATCCTTTTTTTTAAAAAAAATCATTCATGAAT
1 GAGAAAACC--TTTTTTAAAAAAATTCATTCATGAAT
51838021 TAGCTTTAAA
Statistics
Matches: 371, Mismatches: 30, Indels: 58
0.81 0.07 0.13
Matches are distributed among these distances:
125 3 0.01
126 5 0.01
127 32 0.09
128 7 0.02
129 24 0.06
130 46 0.12
131 84 0.23
132 38 0.10
133 21 0.06
134 72 0.19
135 32 0.09
136 7 0.02
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (125 bp):
GAGAAAACCTTTTTTAAAAAAATTCATTCATGAATCTCAAAGCAAATATATGAAGAAAAAAAAGA
GAGAAAACCCTTTTAAAAAAAAGCATTCATGAAATTCAAAACAAATATATGATAAAACAA
Found at i:51837967 original size:131 final size:133
Alignment explanation
Indices: 51837685--51838020 Score: 478
Period size: 131 Copynumber: 2.6 Consensus size: 133
51837675 TTTAATAATT
* * * *
51837685 TCATTCATGAATTTCAAAACAAA-ATATGAAAAAACAAGAGAAA-ACCTTTTCTT--AAAAATAA
1 TCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAATCCCTTTT-TTAAAAAAAAAA
*
51837746 TTTCATTCATGAATCTCAAAGCAAATATATGGAGAGAGAAAAAAGAGAGAGAAAACCCTTTTAAA
65 ATTCATTCATGAATCTCAAAGCAAATATATGGAGAGAGAAAAAAGAGAGAGAAAACCCTTTTAAA
51837811 AAAA
130 AAAA
*
51837815 GCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAATCCCTTTTTTGAAAAAAAAAA
1 TCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAATCCCTTTTTT-AAAAAAAAAA
51837880 ATTCATTCATGAATCTCAAAGCAAATATAT-GA-AGA-AAAAAA-AGAGAGAAAACCCTTTTAAA
65 ATTCATTCATGAATCTCAAAGCAAATATATGGAGAGAGAAAAAAGAGAGAGAAAACCCTTTT-AA
51837941 AAAAA
129 AAAAA
* * **
51837946 TCATTCATGAAATTCAGAACAAATATATGATAGAACAAGAGAAAT-CCTTTTTT-TTAAAAAAAA
1 TCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAATCCCTTTTTTAAAAAAAAAAA
51838009 -TCATTCATGAAT
66 TTCATTCATGAAT
51838021 TAGCTTTAAA
Statistics
Matches: 189, Mismatches: 11, Indels: 15
0.88 0.05 0.07
Matches are distributed among these distances:
127 12 0.06
128 8 0.04
130 46 0.24
131 76 0.40
132 9 0.05
133 2 0.01
134 36 0.19
ACGTcount: A:0.52, C:0.12, G:0.10, T:0.25
Consensus pattern (133 bp):
TCATTCATGAAATTCAAAACAAATATATGATAAAACAAGAGAAATCCCTTTTTTAAAAAAAAAAA
TTCATTCATGAATCTCAAAGCAAATATATGGAGAGAGAAAAAAGAGAGAGAAAACCCTTTTAAAA
AAA
Found at i:51843981 original size:16 final size:18
Alignment explanation
Indices: 51843949--51843984 Score: 58
Period size: 16 Copynumber: 2.1 Consensus size: 18
51843939 AATATATTGT
51843949 AATATTTGTATTATTTAA
1 AATATTTGTATTATTTAA
51843967 AATATTT-TA-TATTTAA
1 AATATTTGTATTATTTAA
51843983 AA
1 AA
51843985 GACATTTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.50
17 2 0.11
18 7 0.39
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
AATATTTGTATTATTTAA
Found at i:51844372 original size:19 final size:19
Alignment explanation
Indices: 51844331--51844372 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
51844321 ATAAAACTTT
* *
51844331 AATTTTTAATAATTTTTTT
1 AATTTTTAATAATTATTTG
51844350 AATTTTTAAATAA-TATTTG
1 AATTTTT-AATAATTATTTG
51844369 AATT
1 AATT
51844373 GAACCTATTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (19 bp):
AATTTTTAATAATTATTTG
Found at i:51846483 original size:22 final size:22
Alignment explanation
Indices: 51846427--51846483 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 22
51846417 AGTTTAAAAT
51846427 AAAATATATAAAAGAAAGTCTTA
1 AAAATATA-AAAAGAAAGTCTTA
*
51846450 AATAATA-AAAAAGACAGT-TTA
1 AA-AATATAAAAAGAAAGTCTTA
51846471 AAAATATACAAAA
1 AAAATATA-AAAA
51846484 ATAGTGTTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
22 13 0.43
23 3 0.10
24 4 0.13
ACGTcount: A:0.65, C:0.05, G:0.07, T:0.23
Consensus pattern (22 bp):
AAAATATAAAAAGAAAGTCTTA
Found at i:51848275 original size:42 final size:42
Alignment explanation
Indices: 51848216--51848304 Score: 178
Period size: 42 Copynumber: 2.1 Consensus size: 42
51848206 CTTAATCATC
51848216 ATATCTGCAGGATTATCATGAGTGCTAACTTTGTTCAAAACA
1 ATATCTGCAGGATTATCATGAGTGCTAACTTTGTTCAAAACA
51848258 ATATCTGCAGGATTATCATGAGTGCTAACTTTGTTCAAAACA
1 ATATCTGCAGGATTATCATGAGTGCTAACTTTGTTCAAAACA
51848300 ATATC
1 ATATC
51848305 ACTACAAGCA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 47 1.00
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
Consensus pattern (42 bp):
ATATCTGCAGGATTATCATGAGTGCTAACTTTGTTCAAAACA
Found at i:51848471 original size:17 final size:17
Alignment explanation
Indices: 51848449--51848482 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
51848439 TATTGGGTTC
51848449 ACCAAAAAGTCTCTTTA
1 ACCAAAAAGTCTCTTTA
* *
51848466 ACCAAATAGTTTCTTTA
1 ACCAAAAAGTCTCTTTA
51848483 CAAGCCTCAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (17 bp):
ACCAAAAAGTCTCTTTA
Found at i:51855488 original size:24 final size:24
Alignment explanation
Indices: 51855460--51855507 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
51855450 ATTTGGTGAG
* *
51855460 TTTAAA-TATAATTTACTCTAATTT
1 TTTAAATTA-AATTGACACTAATTT
51855484 TTTAAATTAAATTGACACTAATTT
1 TTTAAATTAAATTGACACTAATTT
51855508 AAAATTATTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 19 0.90
25 2 0.10
ACGTcount: A:0.40, C:0.08, G:0.02, T:0.50
Consensus pattern (24 bp):
TTTAAATTAAATTGACACTAATTT
Found at i:51859100 original size:23 final size:23
Alignment explanation
Indices: 51859071--51859120 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 23
51859061 TATTCATCAC
51859071 ATAAATAATAATTA-TTATACAAT
1 ATAAATAAT-ATTATTTATACAAT
* *
51859094 ATAAATAATTTTATTTATATAAT
1 ATAAATAATATTATTTATACAAT
51859117 ATAA
1 ATAA
51859121 GTTAAGAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 3 0.12
23 21 0.88
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (23 bp):
ATAAATAATATTATTTATACAAT
Found at i:51864431 original size:18 final size:18
Alignment explanation
Indices: 51864410--51864471 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 18
51864400 ATATATAGAT
51864410 ATATATAATAAGATATAA
1 ATATATAATAAGATATAA
*
51864428 ATATATAATAAGATGATAT
1 ATATATAATAAGAT-ATAA
*
51864447 ATATA-AAT-AGTTAT-A
1 ATATATAATAAGATATAA
51864462 ATA-ATAATAA
1 ATATATAATAA
51864472 TAATAATAGG
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 1 0.03
15 6 0.16
16 3 0.08
17 3 0.08
18 17 0.45
19 8 0.21
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.35
Consensus pattern (18 bp):
ATATATAATAAGATATAA
Found at i:51864462 original size:35 final size:33
Alignment explanation
Indices: 51864407--51864471 Score: 87
Period size: 35 Copynumber: 1.9 Consensus size: 33
51864397 GAGATATATA
51864407 GATATATATAATAAGATATAAATATATAATAAGAT
1 GATATATATAATAAGATAT-AATA-ATAATAAGAT
*
51864442 GATATATATAA-ATAGTTATAATAATAATAA
1 GATATATATAATA-AGATATAATAATAATAA
51864472 TAATAATAGG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 7 0.25
34 5 0.18
35 16 0.57
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (33 bp):
GATATATATAATAAGATATAATAATAATAAGAT
Found at i:51866255 original size:43 final size:43
Alignment explanation
Indices: 51866197--51866352 Score: 134
Period size: 43 Copynumber: 3.4 Consensus size: 43
51866187 GATCTGAAAT
*
51866197 CTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGA
1 CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTATCGA
* * * *
51866240 CTTCAATGTACTCCACTG-TAGTCACAGGGAGGTAGAATCTGCCATCTATGA
1 CTTCAATCTACTCCACTGCCA-AC-CAGGGAGATAGAAT-T---ATC---GA
* *
51866291 TCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGG
1 -CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTATCGA
* *
51866335 CTTCGATATACTCCACTG
1 CTTCAATCTACTCCACTG
51866353 TAGTCACAGT
Statistics
Matches: 88, Mismatches: 14, Indels: 22
0.71 0.11 0.18
Matches are distributed among these distances:
42 1 0.01
43 32 0.36
44 14 0.16
45 1 0.01
47 3 0.03
48 3 0.03
50 1 0.01
51 15 0.17
52 17 0.19
53 1 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (43 bp):
CTTCAATCTACTCCACTGCCAACCAGGGAGATAGAATTATCGA
Found at i:51866358 original size:95 final size:94
Alignment explanation
Indices: 51866195--51866373 Score: 313
Period size: 95 Copynumber: 1.9 Consensus size: 94
51866185 AAGATCTGAA
*
51866195 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGACTTCAATGTACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGACTTCAATATACTCCACTGTA
51866260 GTCACAGGGAGGTAGAATCTGCCATCTATG
66 GTCACAGGGAGGTA-AATCTGCCATCTATG
* *
51866290 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGGCTTCGATATACTCCACTGTA
1 ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGACTTCAATATACTCCACTGTA
*
51866355 GTCACAGTGAGGTAAATCT
66 GTCACAGGGAGGTAAATCT
51866374 CTGGCTTTAG
Statistics
Matches: 80, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
94 5 0.06
95 75 0.94
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (94 bp):
ATCTTCAATCTATTCCACTGCCAACCAGGGAGATAGAATTATCGACTTCAATATACTCCACTGTA
GTCACAGGGAGGTAAATCTGCCATCTATG
Found at i:51866760 original size:88 final size:88
Alignment explanation
Indices: 51866577--51867068 Score: 712
Period size: 86 Copynumber: 5.7 Consensus size: 88
51866567 GCAACTGATG
* * * * **
51866577 GAGGCAAGGCTTTGT-T-TTTGATCTGCTTTGCTGTTAACGCAGGAAGGCAAGATCTGCT-TCTT
1 GAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTT
* * *
51866639 TAACTAGCTCCA-CTACAACCGAGA
65 CAACCAGCTCCATC-ACAACCGAAA
* *
51866663 GAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
* *
51866728 AACCAGCTCTATCGCAACCGAAA
66 AACCAGCTCCATCACAACCGAAA
*
51866751 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
51866816 AACCAGCTCCAT--CAACCGAAA
66 AACCAGCTCCATCACAACCGAAA
*
51866837 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
51866902 AACCAGCTCCATCACAACCGAAA
66 AACCAGCTCCATCACAACCGAAA
*
51866925 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAG--CTTTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
*
51866988 AACCAGCTCTATCACAACCGAAA
66 AACCAGCTCCATCACAACCGAAA
* * * * *
51867011 GAGGCAAGGTTTATGTCTTCAACCTGTTTCACTGTCAATGCAGGAAGGCAAGATCTTT
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTT
51867069 AACTTCATTG
Statistics
Matches: 372, Mismatches: 26, Indels: 14
0.90 0.06 0.03
Matches are distributed among these distances:
85 5 0.01
86 175 0.47
87 34 0.09
88 157 0.42
89 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (88 bp):
GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
AACCAGCTCCATCACAACCGAAA
Found at i:51866834 original size:174 final size:175
Alignment explanation
Indices: 51866577--51867068 Score: 735
Period size: 174 Copynumber: 2.8 Consensus size: 175
51866567 GCAACTGATG
* * * * **
51866577 GAGGCAAGGCTTTGT-T-TTTGATCTGCTTTGCTGTTAACGCAGGAAGGCAAGATCTGCT-TCTT
1 GAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTT
* * *
51866639 TAACTAGCTCCACTACAACCGAGAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGC
65 CAACCAGCTCCA-TACAACCGAAAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGC
* *
51866704 AGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCTATCGCAACCGAAA
129 AGGAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAAA
*
51866751 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGAAAGGCAAGATCTTTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
* *
51866816 AACCAGCTCCAT-CAACCGAAAGAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAG
66 AACCAGCTCCATACAACCGAAAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCAG
*
51866880 AAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAAA
131 GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAAA
*
51866925 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGTAGGAAGGCAAG--CTTTTGTCTTC
1 GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
* * * *
51866988 AACCAGCTCTATCACAACCGAAAGAGGCAAGGTTTATGTCTTCAACCTGTTTCACTGTCAATGCA
66 AACCAGCTCCAT-ACAACCGAAAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCA
51867053 GGAAGGCAAGATCTTT
130 GGAAGGCAAGATCTTT
51867069 AACTTCATTG
Statistics
Matches: 289, Mismatches: 24, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
172 22 0.08
173 5 0.02
174 212 0.73
175 36 0.12
176 14 0.05
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.29
Consensus pattern (175 bp):
GAGGCAAGGTTTGTGTCTTCGATCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTTTTGTCTTC
AACCAGCTCCATACAACCGAAAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCAG
GAAGGCAAGATCTTTTGTCTTCAACCAGCTCCATCACAACCGAAA
Found at i:51867444 original size:52 final size:53
Alignment explanation
Indices: 51867382--51867486 Score: 203
Period size: 52 Copynumber: 2.0 Consensus size: 53
51867372 ACAAAATTTG
51867382 TACCATCATTCTCCCACTACAATCCAAGGGTAGAAATATGG-TTTTCCTCAAT
1 TACCATCATTCTCCCACTACAATCCAAGGGTAGAAATATGGTTTTTCCTCAAT
51867434 TACCATCATTCTCCCACTACAATCCAAGGGTAGAAATATGGTTTTTCCTCAAT
1 TACCATCATTCTCCCACTACAATCCAAGGGTAGAAATATGGTTTTTCCTCAAT
51867487 CCTCTTTTAT
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
52 41 0.79
53 11 0.21
ACGTcount: A:0.30, C:0.27, G:0.11, T:0.31
Consensus pattern (53 bp):
TACCATCATTCTCCCACTACAATCCAAGGGTAGAAATATGGTTTTTCCTCAAT
Found at i:51869258 original size:7 final size:8
Alignment explanation
Indices: 51869233--51869262 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
51869223 CTATTTTGAC
51869233 TTTGATTTT
1 TTTGA-TTT
51869242 TTTGATTT
1 TTTGATTT
51869250 TTTGATTT
1 TTTGATTT
51869258 TTTGA
1 TTTGA
51869263 ATTCATGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 16 0.76
9 5 0.24
ACGTcount: A:0.13, C:0.00, G:0.13, T:0.73
Consensus pattern (8 bp):
TTTGATTT
Found at i:51873999 original size:18 final size:18
Alignment explanation
Indices: 51873978--51874039 Score: 69
Period size: 18 Copynumber: 3.6 Consensus size: 18
51873968 ATATATAGAT
51873978 ATATATAATAAGATATAA
1 ATATATAATAAGATATAA
*
51873996 ATATATAATAAGATGATAT
1 ATATATAATAAGAT-ATAA
*
51874015 ATATA-AAT-AGTTAT-A
1 ATATATAATAAGATATAA
51874030 ATA-ATAATAA
1 ATATATAATAA
51874040 TATAATAATA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 1 0.03
15 6 0.16
16 3 0.08
17 3 0.08
18 17 0.45
19 8 0.21
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.35
Consensus pattern (18 bp):
ATATATAATAAGATATAA
Found at i:51874030 original size:35 final size:33
Alignment explanation
Indices: 51873975--51874039 Score: 87
Period size: 35 Copynumber: 1.9 Consensus size: 33
51873965 GAGATATATA
51873975 GATATATATAATAAGATATAAATATATAATAAGAT
1 GATATATATAATAAGATAT-AATA-ATAATAAGAT
*
51874010 GATATATATAA-ATAGTTATAATAATAATAA
1 GATATATATAATA-AGATATAATAATAATAA
51874040 TATAATAATA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
33 7 0.25
34 5 0.18
35 16 0.57
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (33 bp):
GATATATATAATAAGATATAATAATAATAAGAT
Found at i:51877104 original size:83 final size:83
Alignment explanation
Indices: 51877007--51877171 Score: 285
Period size: 83 Copynumber: 2.0 Consensus size: 83
51876997 GTAAAGTATG
*
51877007 ATTCTTCAATTTTTTTTAAATAATATTTATATCGAACATAATATGTATTCGATATTCACTCAAAT
1 ATTCTTCAAATTTTTTTAAATAATATTTATATCGAACATAATATGTATTCGATATTCACTCAAAT
*
51877072 TCAAGTAACAAATTGGGT
66 CCAAGTAACAAATTGGGT
*
51877090 ATTCTTCAAATTTTTTTAAATAATATTTATATCGAACATAATATGTATTCGATATTCACTCACAT
1 ATTCTTCAAATTTTTTTAAATAATATTTATATCGAACATAATATGTATTCGATATTCACTCAAAT
* *
51877155 CCGAGTAACAGATTGGG
66 CCAAGTAACAAATTGGG
51877172 GATATGGTCT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 77 1.00
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (83 bp):
ATTCTTCAAATTTTTTTAAATAATATTTATATCGAACATAATATGTATTCGATATTCACTCAAAT
CCAAGTAACAAATTGGGT
Found at i:51878294 original size:25 final size:25
Alignment explanation
Indices: 51878260--51878308 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
51878250 AAATTTCTTT
* *
51878260 ATATATTTTTAAAATTTTTTTAAAA
1 ATATAATTTTAAAATTTTTATAAAA
**
51878285 ATATAATTTTGGAATTTTTATAAA
1 ATATAATTTTAAAATTTTTATAAA
51878309 TATTTAAATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (25 bp):
ATATAATTTTAAAATTTTTATAAAA
Found at i:51878320 original size:18 final size:19
Alignment explanation
Indices: 51878297--51878332 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
51878287 ATAATTTTGG
*
51878297 AATTTTTATAAA-TATTTA
1 AATTTTTACAAATTATTTA
51878315 AATTTTTACAAATTATTT
1 AATTTTTACAAATTATTT
51878333 TGAATTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (19 bp):
AATTTTTACAAATTATTTA
Found at i:51878824 original size:20 final size:20
Alignment explanation
Indices: 51878799--51878840 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
51878789 CTGGGTAAAA
*
51878799 TTTTTACACAAATTCATATT
1 TTTTTACACAAATTAATATT
* *
51878819 TTTTTATACAAGTTAATATT
1 TTTTTACACAAATTAATATT
51878839 TT
1 TT
51878841 AACAATACAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.02, T:0.55
Consensus pattern (20 bp):
TTTTTACACAAATTAATATT
Found at i:51891355 original size:69 final size:67
Alignment explanation
Indices: 51891229--51891355 Score: 193
Period size: 69 Copynumber: 1.9 Consensus size: 67
51891219 TTACCCTATA
* *
51891229 TTCTACCCTTAATATTATATCAAAAAAAAAGAGTAGAGATTATATTCATGAATCATATTACCTCA
1 TTCTACCCTTAATATTATATCAAAAAAAAAGAGTAAAGATCATATTCATGAATCATATTACCTCA
51891294 TC
66 TC
*
51891296 TTCTATCCC-TAATATTGTATCGAAAAAAAAGAGAGTAAAGATCATATTCATGAATCATAT
1 TTCTA-CCCTTAATATTATATC-AAAAAAAA-AGAGTAAAGATCATATTCATGAATCATAT
51891356 ATTCGGAATT
Statistics
Matches: 54, Mismatches: 3, Indels: 4
0.89 0.05 0.07
Matches are distributed among these distances:
67 16 0.30
68 11 0.20
69 27 0.50
ACGTcount: A:0.43, C:0.15, G:0.09, T:0.33
Consensus pattern (67 bp):
TTCTACCCTTAATATTATATCAAAAAAAAAGAGTAAAGATCATATTCATGAATCATATTACCTCA
TC
Found at i:51896104 original size:18 final size:19
Alignment explanation
Indices: 51896081--51896119 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
51896071 TATTTAATTT
51896081 TAACTAGACT-TGAACAAA
1 TAACTAGACTATGAACAAA
51896099 TAACTAGACTCATGAACAAA
1 TAACTAGACT-ATGAACAAA
51896119 T
1 T
51896120 CTACTTGTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 10 0.53
20 9 0.47
ACGTcount: A:0.49, C:0.18, G:0.10, T:0.23
Consensus pattern (19 bp):
TAACTAGACTATGAACAAA
Found at i:51901569 original size:21 final size:21
Alignment explanation
Indices: 51901528--51901571 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
51901518 TTTTAAGAGG
* *
51901528 TTTGAAATTGAATTATAAATT
1 TTTGAAATTAAAATATAAATT
51901549 TTTGAAAGTTAAAATAT-AATT
1 TTTGAAA-TTAAAATATAAATT
51901570 TT
1 TT
51901572 ATCATATATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (21 bp):
TTTGAAATTAAAATATAAATT
Found at i:51903897 original size:5 final size:6
Alignment explanation
Indices: 51903870--51903895 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
51903860 CTTATTGTTG
51903870 AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AA
51903896 TATGTGAATC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:51904619 original size:39 final size:39
Alignment explanation
Indices: 51904553--51904646 Score: 143
Period size: 39 Copynumber: 2.4 Consensus size: 39
51904543 CGACTACTGT
* * *
51904553 TACTGTTACTAATTACTGATTCGGCACTTTGTGTGTCGAA
1 TACTGTTACT-GTTACAGATTCAGCACTTTGTGTGTCGAA
*
51904593 TACTGTTACTGTTACAGATTCAGCACTTTGTGTGTTGAA
1 TACTGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
51904632 TACTGTTACTGTTAC
1 TACTGTTACTGTTAC
51904647 TGCTACCATT
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
39 40 0.80
40 10 0.20
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.41
Consensus pattern (39 bp):
TACTGTTACTGTTACAGATTCAGCACTTTGTGTGTCGAA
Found at i:51905179 original size:13 final size:15
Alignment explanation
Indices: 51905161--51905192 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
51905151 TATATGAAAT
51905161 AATGATT-TT-ATGA
1 AATGATTATTGATGA
51905174 AATGATTATTGATGA
1 AATGATTATTGATGA
51905189 AATG
1 AATG
51905193 CATGAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 2 0.12
15 8 0.47
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (15 bp):
AATGATTATTGATGA
Done.