Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 25 of 173
Found at i:6673201 original size:19 final size:20
Alignment explanation
Indices: 6673179--6673217 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
6673169 TTTAGTTATC
6673179 TTATTCT-TCTTCTCCTTTT
1 TTATTCTCTCTTCTCCTTTT
*
6673198 TTATTCTCTCTTCTTCTTTT
1 TTATTCTCTCTTCTCCTTTT
6673218 CATAACCCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.69
Consensus pattern (20 bp):
TTATTCTCTCTTCTCCTTTT
Found at i:6681858 original size:23 final size:23
Alignment explanation
Indices: 6681832--6681903 Score: 69
Period size: 23 Copynumber: 3.1 Consensus size: 23
6681822 CAGTCCAATT
6681832 TCTTAATAACCTAAATTAATTAA
1 TCTTAATAACCTAAATTAATTAA
*
6681855 TCTTAATAACCCT-AATCT-AGTAA
1 TCTTAATAA-CCTAAAT-TAATTAA
* *
6681878 TACCTAAT-ACCCAAATTAATTAA
1 T-CTTAATAACCTAAATTAATTAA
6681901 TCT
1 TCT
6681904 AATCTATTAA
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
22 4 0.10
23 26 0.67
24 9 0.23
ACGTcount: A:0.43, C:0.19, G:0.01, T:0.36
Consensus pattern (23 bp):
TCTTAATAACCTAAATTAATTAA
Found at i:6681906 original size:36 final size:36
Alignment explanation
Indices: 6681866--6681943 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
6681856 CTTAATAACC
*
6681866 CTAATCTAGTAATACCTAATACCCAAATTAATTAAT
1 CTAATCTAGTAATACCTAATACCCAAACTAATTAAT
*
6681902 CTAATCTATTAATACCTAATACCCAAACTAATTAAT
1 CTAATCTAGTAATACCTAATACCCAAACTAATTAAT
6681938 -TAATCT
1 CTAATCT
6681944 TAATAACTCT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
35 6 0.15
36 34 0.85
ACGTcount: A:0.44, C:0.21, G:0.01, T:0.35
Consensus pattern (36 bp):
CTAATCTAGTAATACCTAATACCCAAACTAATTAAT
Found at i:6682005 original size:23 final size:23
Alignment explanation
Indices: 6681979--6682064 Score: 68
Period size: 23 Copynumber: 3.6 Consensus size: 23
6681969 ATTCCAATTG
6681979 CTTAATAACTCAAAATAATTAAT
1 CTTAATAACTCAAAATAATTAAT
* *
6682002 CTTAATAACTC-TAATCTATTAAT
1 CTTAATAACTCAAAAT-AATTAAT
* *
6682025 ACATAAT-ACCCAACTTAATTAATTAAT
1 -CTTAATAACTCAA---AA-TAATTAAT
6682052 CTTAATAACTCAA
1 CTTAATAACTCAA
6682065 TCTATTACTT
Statistics
Matches: 47, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
22 3 0.06
23 20 0.43
24 5 0.11
26 5 0.11
27 13 0.28
28 1 0.02
ACGTcount: A:0.47, C:0.17, G:0.00, T:0.36
Consensus pattern (23 bp):
CTTAATAACTCAAAATAATTAAT
Found at i:6686350 original size:33 final size:33
Alignment explanation
Indices: 6686294--6686365 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 33
6686284 ATTTTATGAC
* *
6686294 TTTT-TAAATATTACTTAACAAAATTTTAAAGTGT
1 TTTTATAAATATTA-TTAA-AAAAATTTAAAGTAT
*
6686328 TTTTATAAATATT-TTAAAAAAATTTAAATTAT
1 TTTTATAAATATTATTAAAAAAATTTAAAGTAT
6686360 TTTTAT
1 TTTTAT
6686366 TATTTTAAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
32 18 0.53
33 4 0.12
34 4 0.12
35 8 0.24
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51
Consensus pattern (33 bp):
TTTTATAAATATTATTAAAAAAATTTAAAGTAT
Found at i:6691997 original size:26 final size:27
Alignment explanation
Indices: 6691953--6692003 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
6691943 TTCTATCCCA
*
6691953 CTTCAATTTAAATAATTAAACATAATT
1 CTTCAATTAAAATAATTAAACATAATT
*
6691980 CTTCAA-TAAAATATTTAAACATAA
1 CTTCAATTAAAATAATTAAACATAA
6692004 AATATATGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 16 0.73
27 6 0.27
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (27 bp):
CTTCAATTAAAATAATTAAACATAATT
Found at i:6705048 original size:24 final size:25
Alignment explanation
Indices: 6704994--6705062 Score: 70
Period size: 25 Copynumber: 2.7 Consensus size: 25
6704984 ATTGTTATTG
* * *
6704994 TATAAAAGTAAAATGAATTATTACAT
1 TATAAAATTAAAAT-ATTTATAACAT
6705020 T-TAAAATTAAAATATTTATAAC-T
1 TATAAAATTAAAATATTTATAACAT
6705043 TATAAAATTTAAAATTATTT
1 TATAAAA-TTAAAA-TATTT
6705063 GAATCCGTAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
23 2 0.05
24 12 0.32
25 17 0.46
26 6 0.16
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (25 bp):
TATAAAATTAAAATATTTATAACAT
Found at i:6705389 original size:17 final size:17
Alignment explanation
Indices: 6705369--6705401 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
6705359 TTTTTAGGAT
6705369 TTTATATATATTTAATC
1 TTTATATATATTTAATC
*
6705386 TTTATGTATATTTAAT
1 TTTATATATATTTAAT
6705402 AAAAAGTTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.03, G:0.03, T:0.61
Consensus pattern (17 bp):
TTTATATATATTTAATC
Found at i:6705412 original size:22 final size:21
Alignment explanation
Indices: 6705386--6705426 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
6705376 ATATTTAATC
*
6705386 TTTATGTATATTTAATAAAAAG
1 TTTATATAT-TTTAATAAAAAG
*
6705408 TTTATATATTTTTATAAAA
1 TTTATATATTTTAATAAAA
6705427 GAAAGACATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (21 bp):
TTTATATATTTTAATAAAAAG
Found at i:6706608 original size:11 final size:10
Alignment explanation
Indices: 6706590--6706628 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
6706580 AACTAAATAC
6706590 AATTTTATAT
1 AATTTTATAT
*
6706600 AATTTTTATAC
1 AA-TTTTATAT
6706611 AATTTTATAT
1 AATTTTATAT
*
6706621 AAATTTAT
1 AATTTTAT
6706629 TTCGAGATAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (10 bp):
AATTTTATAT
Found at i:6709803 original size:18 final size:18
Alignment explanation
Indices: 6709780--6709814 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
6709770 AAAAGTTAAT
6709780 TAATATATATAAT-TAAAA
1 TAATAT-TATAATATAAAA
6709798 TAATATTATAATATAAA
1 TAATATTATAATATAAA
6709815 TTTATTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TAATATTATAATATAAAA
Found at i:6710482 original size:27 final size:27
Alignment explanation
Indices: 6710452--6710517 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
6710442 CCTACCTAGT
6710452 AGGCGCCAATGGAGGAGCCTCATGCAG
1 AGGCGCCAATGGAGGAGCCTCATGCAG
* *
6710479 AGGCGCCAATGAAGGAGCCTCATGGAG
1 AGGCGCCAATGGAGGAGCCTCATGCAG
6710506 AGGCGCCAATGG
1 AGGCGCCAATGG
6710518 TGTCCTCTGC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.27, C:0.24, G:0.38, T:0.11
Consensus pattern (27 bp):
AGGCGCCAATGGAGGAGCCTCATGCAG
Found at i:6710761 original size:22 final size:21
Alignment explanation
Indices: 6710726--6710800 Score: 95
Period size: 20 Copynumber: 3.7 Consensus size: 21
6710716 TAGATTAGAA
*
6710726 TTTTGTA-GAATATTTTAACTT
1 TTTTGTATGAATATTATAA-TT
6710747 TTTTGTATGAATATTATAATT
1 TTTTGTATGAATATTATAATT
*
6710768 TTTT-TATGAATATTGTAA--
1 TTTTGTATGAATATTATAATT
6710786 TTTTGTATGAATATT
1 TTTTGTATGAATATT
6710801 GCAATCTTAT
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
18 4 0.08
19 10 0.20
20 13 0.26
21 13 0.26
22 10 0.20
ACGTcount: A:0.31, C:0.01, G:0.11, T:0.57
Consensus pattern (21 bp):
TTTTGTATGAATATTATAATT
Found at i:6710775 original size:20 final size:20
Alignment explanation
Indices: 6710733--6710800 Score: 84
Period size: 19 Copynumber: 3.4 Consensus size: 20
6710723 GAATTTTGTA
*
6710733 GAATATTTTAACTTTTTTGTAT
1 GAATATTATAA-TTTTTT-TAT
6710755 GAATATTATAATTTTTTTAT
1 GAATATTATAATTTTTTTAT
* *
6710775 GAATATTGTAA-TTTTGTAT
1 GAATATTATAATTTTTTTAT
6710794 GAATATT
1 GAATATT
6710801 GCAATCTTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
19 14 0.33
20 13 0.30
21 6 0.14
22 10 0.23
ACGTcount: A:0.32, C:0.01, G:0.10, T:0.56
Consensus pattern (20 bp):
GAATATTATAATTTTTTTAT
Found at i:6713830 original size:18 final size:17
Alignment explanation
Indices: 6713797--6713842 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
6713787 CCTAATTTTT
* *
6713797 TTTCTTCTTTTCCTTCA
1 TTTCTTCTTCTACTTCA
*
6713814 TTCTTTTCTTCTACTTCA
1 TT-TCTTCTTCTACTTCA
6713832 TTTCTTCTTCT
1 TTTCTTCTTCT
6713843 TTCTTCCATT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
17 10 0.42
18 14 0.58
ACGTcount: A:0.07, C:0.28, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTCTTCTTCTACTTCA
Found at i:6713848 original size:18 final size:18
Alignment explanation
Indices: 6713797--6713855 Score: 61
Period size: 19 Copynumber: 3.3 Consensus size: 18
6713787 CCTAATTTTT
*
6713797 TTTCTTCTT-TTCCTTCA
1 TTTCTTCTTCTTTCTTCA
6713814 -TTCTT-TTCTTCTACTTCA
1 TTTCTTCTTCTT-T-CTTCA
6713832 TTTCTTCTTCTTTCTTCCA
1 TTTCTTCTTCTTTCTT-CA
6713851 TTTCT
1 TTTCT
6713856 GTAGTCAAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
15 2 0.06
16 7 0.20
18 8 0.23
19 13 0.37
20 5 0.14
ACGTcount: A:0.07, C:0.29, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTCTTCTTCTTTCTTCA
Found at i:6714006 original size:27 final size:27
Alignment explanation
Indices: 6713907--6714008 Score: 136
Period size: 27 Copynumber: 3.8 Consensus size: 27
6713897 AAATCACAGT
6713907 ATTGGCGCCTTCCA-ATATGGCACCACC
1 ATTGGCGCCTTCCAGATA-GGCACCACC
*
6713934 ATTGGCGCC-TCCTAGATAAGCACCACC
1 ATTGGCGCCTTCC-AGATAGGCACCACC
* * *
6713961 ATTGGTGCCTCCCAAATAGGCACCACC
1 ATTGGCGCCTTCCAGATAGGCACCACC
6713988 ATTGGCGCCTTCCAGATAGGC
1 ATTGGCGCCTTCCAGATAGGC
6714009 GCTAATACTA
Statistics
Matches: 64, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
26 3 0.05
27 56 0.88
28 5 0.08
ACGTcount: A:0.24, C:0.35, G:0.21, T:0.21
Consensus pattern (27 bp):
ATTGGCGCCTTCCAGATAGGCACCACC
Found at i:6719261 original size:3 final size:3
Alignment explanation
Indices: 6719253--6719280 Score: 56
Period size: 3 Copynumber: 9.3 Consensus size: 3
6719243 GAATCACAAT
6719253 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T
6719281 ATTTTATAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 25 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:6722030 original size:26 final size:25
Alignment explanation
Indices: 6721977--6722045 Score: 70
Period size: 26 Copynumber: 2.7 Consensus size: 25
6721967 AGCACTAATT
6721977 GGAAGCTCACAAAGAGCCTTTAATCG
1 GGAAGCTCACAAAGAG-CTTTAATCG
*
6722003 GGAAGCTCACGAAGAGCTATATAA-CG
1 GGAAGCTCACAAAGAGCT-T-TAATCG
* *
6722029 GGATGCTCA-TAAGAGCT
1 GGAAGCTCACAAAGAGCT
6722046 GCGATGTGCC
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
25 9 0.24
26 26 0.68
27 3 0.08
ACGTcount: A:0.35, C:0.20, G:0.26, T:0.19
Consensus pattern (25 bp):
GGAAGCTCACAAAGAGCTTTAATCG
Found at i:6727372 original size:7 final size:7
Alignment explanation
Indices: 6727360--6727388 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
6727350 TTAATTACAT
6727360 CTCTCTC
1 CTCTCTC
6727367 CTCTCTC
1 CTCTCTC
6727374 CTCTCTC
1 CTCTCTC
6727381 CTCTCTC
1 CTCTCTC
6727388 C
1 C
6727389 AAATATCTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41
Consensus pattern (7 bp):
CTCTCTC
Found at i:6728524 original size:6 final size:7
Alignment explanation
Indices: 6728509--6728533 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
6728499 TGTAATTTGT
6728509 AAAACAA
1 AAAACAA
6728516 AAAACAA
1 AAAACAA
6728523 AAAACAA
1 AAAACAA
6728530 AAAA
1 AAAA
6728534 ATACTAAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (7 bp):
AAAACAA
Found at i:6741782 original size:21 final size:21
Alignment explanation
Indices: 6741758--6741859 Score: 84
Period size: 21 Copynumber: 4.9 Consensus size: 21
6741748 ACGAGCTTCT
*
6741758 GTTTAACTCATATGAGTTTTC
1 GTTTAACTCTTATGAGTTTTC
*
6741779 GTTTAGCT-TTATTGAGCTTTT-
1 GTTTAACTCTTA-TGAG-TTTTC
* * *
6741800 GTTTAACCCTTATGGGTTTCC
1 GTTTAACTCTTATGAGTTTTC
* *
6741821 GTTCAACTCTTATGAGCTTTC
1 GTTTAACTCTTATGAGTTTTC
* *
6741842 GTTCAAC-CCTATGAGTTT
1 GTTTAACTCTTATGAGTTT
6741860 CTGTTTAGCA
Statistics
Matches: 64, Mismatches: 13, Indels: 9
0.74 0.15 0.10
Matches are distributed among these distances:
20 14 0.22
21 43 0.67
22 7 0.11
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.46
Consensus pattern (21 bp):
GTTTAACTCTTATGAGTTTTC
Found at i:6741796 original size:42 final size:40
Alignment explanation
Indices: 6741750--6741887 Score: 109
Period size: 42 Copynumber: 3.3 Consensus size: 40
6741740 TAGCGCTCAC
6741750 GAGCTTCTGTTTAACTCATATGAGTTTTCGTTTAGCTTTATT
1 GAGCTTCTGTTTAAC-CATATGAGTTTTCGTTTAGCTTTA-T
* * * * * *
6741792 GAGCTTTTGTTTAACCCTTATGGGTTTCCGTTCAACTCTTAT
1 GAGCTTCTGTTTAA-CCATATGAGTTTTCGTTTAGCT-TTAT
* * *
6741834 GAGCTT-TCGTTCAACCCTATGAG-TTTCTGTTTAGCACTTAT
1 GAGCTTCT-GTTTAACCATATGAGTTTTC-GTTTAGC-TTTAT
*
6741875 GTGCTTCTGTTTA
1 GAGCTTCTGTTTA
6741888 GCCTTTGGGC
Statistics
Matches: 75, Mismatches: 15, Indels: 13
0.73 0.15 0.13
Matches are distributed among these distances:
40 3 0.04
41 26 0.35
42 42 0.56
43 4 0.05
ACGTcount: A:0.17, C:0.19, G:0.17, T:0.46
Consensus pattern (40 bp):
GAGCTTCTGTTTAACCATATGAGTTTTCGTTTAGCTTTAT
Found at i:6741901 original size:19 final size:21
Alignment explanation
Indices: 6741858--6741901 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
6741848 CCCTATGAGT
*
6741858 TTCTGTTTAGCACTTATGTGC
1 TTCTGTTTAGCACTTATGGGC
6741879 TTCTGTTTAGC-CTT-TGGGC
1 TTCTGTTTAGCACTTATGGGC
6741898 TTCT
1 TTCT
6741902 AGAAATGATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 8 0.36
20 3 0.14
21 11 0.50
ACGTcount: A:0.09, C:0.20, G:0.20, T:0.50
Consensus pattern (21 bp):
TTCTGTTTAGCACTTATGGGC
Found at i:6753993 original size:19 final size:18
Alignment explanation
Indices: 6753961--6754012 Score: 54
Period size: 19 Copynumber: 2.8 Consensus size: 18
6753951 AATTCTAATA
6753961 TTATAAA-ATCAATTAATTAT
1 TTATAAATAT-AATT-ATT-T
6753981 TT-TAAATATAATTATTT
1 TTATAAATATAATTATTT
6753998 TTAGTAAATATAATT
1 TTA-TAAATATAATT
6754013 TTTATATGTG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
17 3 0.10
18 3 0.10
19 19 0.66
20 4 0.14
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (18 bp):
TTATAAATATAATTATTT
Found at i:6754152 original size:32 final size:32
Alignment explanation
Indices: 6754086--6754187 Score: 129
Period size: 32 Copynumber: 3.2 Consensus size: 32
6754076 ATCAAATAAT
* * *
6754086 TATTTCAAGTATCATTATTTTTTATATTTAAAA
1 TATTTCAAATATCATTA-TTTTTATATGTGAAA
*
6754119 TATTTAAAATATCATTATTTTTATATGTGAAA
1 TATTTCAAATATCATTATTTTTATATGTGAAA
*
6754151 TATTTCAAATATCATTA--TGT-TATGTGAAA
1 TATTTCAAATATCATTATTTTTATATGTGAAA
6754180 TATTTCAA
1 TATTTCAA
6754188 TTAATTATTT
Statistics
Matches: 63, Mismatches: 6, Indels: 4
0.86 0.08 0.05
Matches are distributed among these distances:
29 17 0.27
30 2 0.03
32 29 0.46
33 15 0.24
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (32 bp):
TATTTCAAATATCATTATTTTTATATGTGAAA
Found at i:6757316 original size:8 final size:8
Alignment explanation
Indices: 6757303--6757372 Score: 88
Period size: 8 Copynumber: 8.5 Consensus size: 8
6757293 CTTTATTTTA
6757303 AAAAAAAG
1 AAAAAAAG
6757311 AAAAAAAG
1 AAAAAAAG
6757319 AAAAAAAG
1 AAAAAAAG
*
6757327 AAAAAAAA
1 AAAAAAAG
6757335 AGAAAAAAG
1 A-AAAAAAG
6757344 AAAAAAAG
1 AAAAAAAG
6757352 AAGAAGAAA-
1 AA-AA-AAAG
*
6757361 AAGAAAAG
1 AAAAAAAG
6757369 AAAA
1 AAAA
6757373 GAGAAAGGAG
Statistics
Matches: 54, Mismatches: 4, Indels: 8
0.82 0.06 0.12
Matches are distributed among these distances:
7 3 0.06
8 37 0.69
9 11 0.20
10 3 0.06
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (8 bp):
AAAAAAAG
Found at i:6757324 original size:17 final size:17
Alignment explanation
Indices: 6757302--6757372 Score: 85
Period size: 17 Copynumber: 4.2 Consensus size: 17
6757292 ACTTTATTTT
6757302 AAAAAAAAGAAAAAAAG
1 AAAAAAAAGAAAAAAAG
6757319 -AAAAAAAGAAAAAAA-
1 AAAAAAAAGAAAAAAAG
6757334 AAGAAAAAAGAAAAAAAG
1 AA-AAAAAAGAAAAAAAG
* *
6757352 AAGAAGAAA-AAGAAAAG
1 AA-AAAAAAGAAAAAAAG
6757369 AAAA
1 AAAA
6757373 GAGAAAGGAG
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
16 18 0.37
17 23 0.47
18 8 0.16
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (17 bp):
AAAAAAAAGAAAAAAAG
Found at i:6757340 original size:25 final size:25
Alignment explanation
Indices: 6757302--6757367 Score: 105
Period size: 25 Copynumber: 2.5 Consensus size: 25
6757292 ACTTTATTTT
6757302 AAAAAAAAGAAAAAAAGAAAAAAAGA
1 AAAAAAAAG-AAAAAAGAAAAAAAGA
6757328 AAAAAAAAGAAAAAAGAAAAAAAGA
1 AAAAAAAAGAAAAAAGAAAAAAAGA
6757353 AGAAGAAAAAGAAAA
1 A-AA-AAAAAGAAAA
6757368 GAAAAGAGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
25 17 0.45
26 11 0.29
27 10 0.26
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (25 bp):
AAAAAAAAGAAAAAAGAAAAAAAGA
Found at i:6757362 original size:1 final size:1
Alignment explanation
Indices: 6757302--6757350 Score: 53
Period size: 1 Copynumber: 49.0 Consensus size: 1
6757292 ACTTTATTTT
* * * * *
6757302 AAAAAAAAGAAAAAAAGAAAAAAAGAAAAAAAAAGAAAAAAGAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
6757351 GAAGAAGAAA
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 38 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (1 bp):
A
Found at i:6757377 original size:18 final size:18
Alignment explanation
Indices: 6757311--6757378 Score: 93
Period size: 18 Copynumber: 3.7 Consensus size: 18
6757301 TAAAAAAAAG
*
6757311 AAAAAAAGAAAAAAAGAA
1 AAAAAAAGAGAAAAAGAA
6757329 AAAAAAAGA-AAAAAGAA
1 AAAAAAAGAGAAAAAGAA
6757346 AAAAAGAAGAAGAAAAAGAA
1 AAAAA-AAG-AGAAAAAGAA
*
6757366 AAGAAAAGAGAAA
1 AAAAAAAGAGAAA
6757379 GGAGATGCCA
Statistics
Matches: 46, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
17 13 0.28
18 17 0.37
19 4 0.09
20 12 0.26
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (18 bp):
AAAAAAAGAGAAAAAGAA
Found at i:6757379 original size:6 final size:5
Alignment explanation
Indices: 6757302--6757379 Score: 61
Period size: 5 Copynumber: 15.0 Consensus size: 5
6757292 ACTTTATTTT
* * * *
6757302 AAAA- AAAAG AAAAA AAGAAA AAAAG AAAAA AAAAG AAAA- AAGAAA AAAAG
1 AAAAG AAAAG AAAAG AA-AAG AAAAG AAAAG AAAAG AAAAG AA-AAG AAAAG
6757352 AAGAAG AAAAAG AAAAG AAAAG AGAAAG
1 AA-AAG -AAAAG AAAAG AAAAG A-AAAG
6757380 GAGATGCCAA
Statistics
Matches: 62, Mismatches: 5, Indels: 12
0.78 0.06 0.15
Matches are distributed among these distances:
4 6 0.10
5 37 0.60
6 17 0.27
7 2 0.03
ACGTcount: A:0.83, C:0.00, G:0.17, T:0.00
Consensus pattern (5 bp):
AAAAG
Found at i:6758317 original size:44 final size:44
Alignment explanation
Indices: 6758263--6759013 Score: 391
Period size: 44 Copynumber: 16.7 Consensus size: 44
6758253 TGGCGAATCT
* *
6758263 TCTCCCTGAAGTTGTAGTGGAGCAGATTAAAGCCACAAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTA
* * * *
6758307 TCTCTCTGAAGTTGCAGTAGAGCAGGTTGAAG-TAACAAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT-ACAAACCTTA
* * * * **
6758351 TTTCCCTGAAGTTGAAGTTGAAGTAG-AGTAGGTTGAAGATACAAGTCTTA
1 TCTCCCTGAAGTTGCAG-TG--G-AGCAG-A--TTAAAGCTACAAACCTTA
** * * **
6758401 TCTCCCTGAAGTTGCAGTGGAATATATTAAAGCTAACATATTTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT-ACAAACCTTA
* * * * *
6758446 TCTCTCTGAAGTTGTAGTAGAGCAGATCATA--T-CAAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTA
* * * *
6758487 TCTCCCTAAAGTTGCAGTGGAGCAGATTGAACCTACTAATCC-TA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC-AAACCTTA
* * ** * * * *
6758531 TCTTCCTAAAGTTGCAGTGGAGTGGATTAAAACGATGAATCC-TA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTA-CAAACCTTA
* * *
6758575 TAC-CTCTGAAGTTGCAGTAGG-TC-GAATTAAATCTACCATAACAAGTCTTA
1 T-CTCCCTGAAGTTGCAGT-GGAGCAG-ATTAAAGCTA-CA-AAC----CTTA
* * * *
6758625 TCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGATAACCAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT-ACAAACCTTA
* * * * * * *
6758670 TCTCCTTAAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTA
* * * * * *
6758714 TCTCTCTGAAGTTGCAATGTAGCAGATTGAAGCTACTAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTA
* * * * *
6758758 TCTCCCTGAAGTTGTAGTGGAGCGGATTAAA-ATGATGAATCC-TA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCT-A-CAAACCTTA
* * * * *
6758802 TAC-CTCTGAAGTTGCAATAGG-TCGGATTAAATCTACCATAACAAGTCTTA
1 T-CTCCCTGAAGTTGCAGT-GGAGCAGATTAAAGCTA-CA-AAC----CTTA
* *
6758852 TCTCTCTGAAGTTGCAGTGGAGCA-ATTAAAGCTGCAAACCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTA
* * * * *
6758895 TCTCCCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAATCTTA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTA
* * * *
6758939 TCTCCTTGAAGTTGCAGTGAAGCAGATTGAAGCTACTAATCC-TA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAC-AAACCTTA
** *
6758983 TCTCCCTGAAGTTGTTGTGGAGCGGATTAAA
1 TCTCCCTGAAGTTGCAGTGGAGCAGATTAAA
6759014 ATGATGAACC
Statistics
Matches: 541, Mismatches: 122, Indels: 88
0.72 0.16 0.12
Matches are distributed among these distances:
41 30 0.06
43 31 0.06
44 287 0.53
45 84 0.16
46 2 0.00
47 8 0.01
48 4 0.01
49 21 0.04
50 71 0.13
51 3 0.01
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (44 bp):
TCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTACAAACCTTA
Found at i:6758388 original size:50 final size:50
Alignment explanation
Indices: 6758313--6758414 Score: 143
Period size: 50 Copynumber: 2.0 Consensus size: 50
6758303 CTTATCTCTC
* *
6758313 TGAAGTTGCAGTAGAGCAGGTTGAAG-TAACAAACCTTATTTCCCTGAAGT
1 TGAAGTTGAAGTAGAGCAGGTTGAAGAT-ACAAACCTTATCTCCCTGAAGT
* **
6758363 TGAAGTTGAAGTAGAGTAGGTTGAAGATACAAGTCTTATCTCCCTGAAGT
1 TGAAGTTGAAGTAGAGCAGGTTGAAGATACAAACCTTATCTCCCTGAAGT
6758413 TG
1 TG
6758415 CAGTGGAATA
Statistics
Matches: 46, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
50 45 0.98
51 1 0.02
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.29
Consensus pattern (50 bp):
TGAAGTTGAAGTAGAGCAGGTTGAAGATACAAACCTTATCTCCCTGAAGT
Found at i:6758992 original size:225 final size:227
Alignment explanation
Indices: 6758391--6759107 Score: 998
Period size: 225 Copynumber: 3.2 Consensus size: 227
6758381 GGTTGAAGAT
** * * ** *
6758391 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAATATATTAAAGCTAACATATTTTATCTCTCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAACAAACCTTATCTCCCTGAA
* * * * * * * * * *
6758456 GTTGTAGTAGAGCA-GAT-CATAT-CAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGATTGAA
66 GTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTGCAGTGAAGCAGATTGAA
* * * * * *
6758518 CCTACTAATCCTATCTTCCTAAAGTTGCAGTGGAGTGGATTAAAACGATGAATCCTATACCTCTG
131 GCTACTAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAATGATGAATCCTATACCTCTG
6758583 AAGTTGCAGTAGGTCGAATTAAATCTACCATA
196 AAGTTGCAGTAGGTCGAATTAAATCTACCATA
* * * * * *
6758615 ACAAGTCTTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAAGATAACCAACCTTATCTCCTTAAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAACAAACCTTATCTCCCTGAA
* *
6758680 GTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCT-CTCTGAAGTTGCAATGTAGCAGATTGA
66 GTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCTCCT-TGAAGTTGCAGTGAAGCAGATTGA
*
6758744 AGCTACTAATCTTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAATGATGAATCCTATACCTCT
130 AGCTACTAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAATGATGAATCCTATACCTCT
* *
6758809 GAAGTTGCAATAGGTCGGATTAAATCTACCATA
195 GAAGTTGCAGTAGGTCGAATTAAATCTACCATA
* *
6758842 ACAAGTCTTATCTCTCTGAAGTTGCAGTGGAGCA-ATTAAAGCT-GCAAACCTTATCTCCCTGAA
1 ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAACAAACCTTATCTCCCTGAA
6758905 GTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTGCAGTGAAGCAGATTGAA
66 GTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTGCAGTGAAGCAGATTGAA
* *
6758970 GCTACTAATCCTATCTCCCTGAAGTTGTTGTGGAGCGGATTAAAATGATGAACCCTATACCTCTG
131 GCTACTAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAATGATGAATCCTATACCTCTG
* *
6759035 AAGTTGCAGTAGGTCAAATTAAATCTATCATA
196 AAGTTGCAGTAGGTCGAATTAAATCTACCATA
*
6759067 ACAAGTCTTATCT-CCTAGAAGTTGCAGTGGAGCAGACTAAA
1 ACAAGTCTTATCTCCCT-GAAGTTGCAGTGGAGCAGATTAAA
6759108 ACCATAAATC
Statistics
Matches: 434, Mismatches: 52, Indels: 12
0.87 0.10 0.02
Matches are distributed among these distances:
224 66 0.15
225 198 0.46
226 18 0.04
227 152 0.35
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.29
Consensus pattern (227 bp):
ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCTAACAAACCTTATCTCCCTGAA
GTTGCAGTGGAGCAGGTTGAAGATACCAATCTTATCTCCTTGAAGTTGCAGTGAAGCAGATTGAA
GCTACTAATCCTATCTCCCTGAAGTTGTAGTGGAGCGGATTAAAATGATGAATCCTATACCTCTG
AAGTTGCAGTAGGTCGAATTAAATCTACCATA
Found at i:6759037 original size:88 final size:88
Alignment explanation
Indices: 6758855--6759101 Score: 202
Period size: 88 Copynumber: 2.7 Consensus size: 88
6758845 AGTCTTATCT
* *
6758855 CTCTGAAGTTGCAGTGGAGCAATTAAAGCTGCAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAG
1 CTCTGAAGTTGCAGTGAAGCAATTAAAGCTACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAG
* * * *
6758920 GTTGAAGATACCAATCTTATCTC
66 GTTGAAAATACCAACCCTATCAC
* * **
6758943 CT-TGAAGTTGCAGTGAAGCAGATTGAAGCTACTAATCC-TATCTCCCTGAAGTTGTTGTGGAGC
1 CTCTGAAGTTGCAGTGAAGCA-ATTAAAGCTAC-AAACCTTATCTCCCTGAAGTTGCAGTGGAGC
**
6759006 -GGATT-AAAATGATGAACCCTAT-AC
64 AGG-TTGAAAAT-ACCAACCCTATCAC
* *
6759030 CTCTGAAGTTGCAGT-AGGTCAAATTAAATCTATCATAACAAGTCTTATCT-CCTAGAAGTTGCA
1 CTCTGAAGTTGCAGTGAAG-C-AATTAAAGCTA-CA-AAC----CTTATCTCCCT-GAAGTTGCA
6759093 GTGGAGCAG
57 GTGGAGCAG
6759102 ACTAAAACCA
Statistics
Matches: 125, Mismatches: 18, Indels: 25
0.74 0.11 0.15
Matches are distributed among these distances:
87 28 0.22
88 65 0.52
89 8 0.06
93 4 0.03
94 19 0.15
95 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.22, T:0.28
Consensus pattern (88 bp):
CTCTGAAGTTGCAGTGAAGCAATTAAAGCTACAAACCTTATCTCCCTGAAGTTGCAGTGGAGCAG
GTTGAAAATACCAACCCTATCAC
Found at i:6763043 original size:23 final size:23
Alignment explanation
Indices: 6763017--6763060 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
6763007 TGAATTATTT
*
6763017 TTACTATTTTA-AATATAAAATAC
1 TTACT-TTTTATAATAAAAAATAC
6763040 TTACTTTTTATAATAAAAAAT
1 TTACTTTTTATAATAAAAAAT
6763061 TAAAATAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 5 0.26
23 14 0.74
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.45
Consensus pattern (23 bp):
TTACTTTTTATAATAAAAAATAC
Found at i:6764922 original size:216 final size:216
Alignment explanation
Indices: 6764548--6764984 Score: 847
Period size: 216 Copynumber: 2.0 Consensus size: 216
6764538 AAAGTTTTCT
6764548 AATTTATTTGGAGTGCCTTTGGATGGTCATACACCCATGCCTTTGTTTGGATATCTGTCCAACAT
1 AATTTATTTGGAGTGCCTTTGGATGGTCATACACCCATGCCTTTGTTTGGATATCTGTCCAACAT
* *
6764613 GTGTACTTCAAGAAAAATTAAGACTTGGAGCAACATAGTTGAATTGAAGTCATCGACTTATGGCC
66 GGGTACTTCAAGAAAAAATAAGACTTGGAGCAACATAGTTGAATTGAAGTCATCGACTTATGGCC
*
6764678 TGGTAATAATGACATTGAGCTGATATGGCTTATGGTATACCATTTAAGGAATAAGAAAGATCAAT
131 TGGTAATAATGACATTGAGCTGATATGGCTAATGGTATACCATTTAAGGAATAAGAAAGATCAAT
6764743 GTATGTCCCTGGTGGAATAAA
196 GTATGTCCCTGGTGGAATAAA
6764764 AATTTATTTGGAGTGCCTTTGGATGGTCATACACCCATGCCTTTGTTTGGATATCTGTCCAACAT
1 AATTTATTTGGAGTGCCTTTGGATGGTCATACACCCATGCCTTTGTTTGGATATCTGTCCAACAT
6764829 GGGTACTTCAAGAAAAAATAAGACTTGGAGCAACATAGTTGAATTGAAGTCATCGACTTATGGCC
66 GGGTACTTCAAGAAAAAATAAGACTTGGAGCAACATAGTTGAATTGAAGTCATCGACTTATGGCC
6764894 TGGTAATAATGACATTGAGCTGATATGGCTAATGGTATACCATTTAAGGAATAAGAAAGATCAAT
131 TGGTAATAATGACATTGAGCTGATATGGCTAATGGTATACCATTTAAGGAATAAGAAAGATCAAT
6764959 GTATGTCCCTGGTGGAATAAA
196 GTATGTCCCTGGTGGAATAAA
6764980 AATTT
1 AATTT
6764985 TAAGTTACCT
Statistics
Matches: 218, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
216 218 1.00
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.32
Consensus pattern (216 bp):
AATTTATTTGGAGTGCCTTTGGATGGTCATACACCCATGCCTTTGTTTGGATATCTGTCCAACAT
GGGTACTTCAAGAAAAAATAAGACTTGGAGCAACATAGTTGAATTGAAGTCATCGACTTATGGCC
TGGTAATAATGACATTGAGCTGATATGGCTAATGGTATACCATTTAAGGAATAAGAAAGATCAAT
GTATGTCCCTGGTGGAATAAA
Found at i:6766947 original size:20 final size:20
Alignment explanation
Indices: 6766922--6766962 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
6766912 GACTTTTATG
6766922 ATAGTTTTGTCCACTCTTGC
1 ATAGTTTTGTCCACTCTTGC
6766942 ATAGTTTTGTCCACTCTTGC
1 ATAGTTTTGTCCACTCTTGC
6766962 A
1 A
6766963 CATCAGCTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.17, C:0.24, G:0.15, T:0.44
Consensus pattern (20 bp):
ATAGTTTTGTCCACTCTTGC
Found at i:6771289 original size:22 final size:23
Alignment explanation
Indices: 6771233--6771289 Score: 66
Period size: 22 Copynumber: 2.6 Consensus size: 23
6771223 TGATTATATA
6771233 AAAAATTA-ATAAATAAAAGTAT
1 AAAAATTATATAAATAAAAGTAT
* **
6771255 AAAAAGTAT-TAAATATTAG-AT
1 AAAAATTATATAAATAAAAGTAT
6771276 AAAAATTATATAAA
1 AAAAATTATATAAA
6771290 AATATTTTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
21 10 0.34
22 19 0.66
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (23 bp):
AAAAATTATATAAATAAAAGTAT
Found at i:6773203 original size:21 final size:21
Alignment explanation
Indices: 6773177--6773237 Score: 95
Period size: 21 Copynumber: 2.9 Consensus size: 21
6773167 ACACACCAAT
*
6773177 AGAAGCTCATAAGAGCTGAAC
1 AGAAGCTCAAAAGAGCTGAAC
* *
6773198 AGAAGCTTAGAAGAGCTGAAC
1 AGAAGCTCAAAAGAGCTGAAC
6773219 AGAAGCTCAAAAGAGCTGA
1 AGAAGCTCAAAAGAGCTGA
6773238 TCCACCCGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 36 1.00
ACGTcount: A:0.44, C:0.16, G:0.26, T:0.13
Consensus pattern (21 bp):
AGAAGCTCAAAAGAGCTGAAC
Found at i:6774514 original size:16 final size:16
Alignment explanation
Indices: 6774493--6774523 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
6774483 TGACTCGTAA
6774493 ATATTATTAATATTTG
1 ATATTATTAATATTTG
6774509 ATATTATTAATATTT
1 ATATTATTAATATTT
6774524 ACGAACTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (16 bp):
ATATTATTAATATTTG
Found at i:6780022 original size:20 final size:22
Alignment explanation
Indices: 6779973--6780051 Score: 67
Period size: 20 Copynumber: 3.5 Consensus size: 22
6779963 TAAAGTTGGG
6779973 TGACTAAAATGAATGTATGTAA
1 TGACTAAAATGAATGTATGTAA
*
6779995 TGAC--AAATTAATG-ATG-AA
1 TGACTAAAATGAATGTATGTAA
*
6780013 TGACTAAAATGATAAATGTAACTGTAG
1 TGACTAAAATG---AATGT-A-TGTAA
6780040 TGACTAAAATGA
1 TGACTAAAATGA
6780052 TAAAAGTATG
Statistics
Matches: 45, Mismatches: 3, Indels: 16
0.70 0.05 0.25
Matches are distributed among these distances:
18 6 0.13
19 3 0.07
20 12 0.27
22 4 0.09
23 4 0.09
24 1 0.02
25 1 0.02
26 2 0.04
27 12 0.27
ACGTcount: A:0.47, C:0.06, G:0.18, T:0.29
Consensus pattern (22 bp):
TGACTAAAATGAATGTATGTAA
Found at i:6780023 original size:27 final size:27
Alignment explanation
Indices: 6779993--6780051 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
6779983 GAATGTATGT
6779993 AATGACAAAT-TAA-TGATGAATGACTAA
1 AATGACAAATGTAACTG-T-AATGACTAA
* *
6780020 AATGATAAATGTAACTGTAGTGACTAA
1 AATGACAAATGTAACTGTAATGACTAA
6780047 AATGA
1 AATGA
6780052 TAAAAGTATG
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
27 22 0.79
28 4 0.14
29 2 0.07
ACGTcount: A:0.49, C:0.07, G:0.17, T:0.27
Consensus pattern (27 bp):
AATGACAAATGTAACTGTAATGACTAA
Found at i:6781742 original size:16 final size:17
Alignment explanation
Indices: 6781714--6781751 Score: 60
Period size: 16 Copynumber: 2.3 Consensus size: 17
6781704 AAAATAAACA
6781714 TTTAAATATTTTTAATT
1 TTTAAATATTTTTAATT
*
6781731 TTTAAA-ATTTTTATTT
1 TTTAAATATTTTTAATT
6781747 TTTAA
1 TTTAA
6781752 GAATAAAGAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
16 14 0.70
17 6 0.30
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (17 bp):
TTTAAATATTTTTAATT
Found at i:6781930 original size:3 final size:3
Alignment explanation
Indices: 6781924--6781982 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
6781914 AAAAGACCAC
6781924 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
6781972 AAT AAT AAT AA
1 AAT AAT AAT AA
6781983 CTGTGACTAG
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:6782877 original size:28 final size:29
Alignment explanation
Indices: 6782823--6782877 Score: 67
Period size: 28 Copynumber: 1.9 Consensus size: 29
6782813 AATTCTTGAA
* * *
6782823 TTATTTTTGCTATCTTAAATATAAAATAT
1 TTATTTTTGATATCATAAAAATAAAATAT
*
6782852 TTATTTTT-ATATCATAAAAATTAAAT
1 TTATTTTTGATATCATAAAAATAAAAT
6782878 TAATTATATA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
28 14 0.64
29 8 0.36
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.51
Consensus pattern (29 bp):
TTATTTTTGATATCATAAAAATAAAATAT
Found at i:6782884 original size:29 final size:29
Alignment explanation
Indices: 6782821--6782884 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
6782811 AGAATTCTTG
* * *
6782821 AATTATTTTTGCTATCTTAAATATAAAAT
1 AATTATTTTTGATATCATAAAAATAAAAT
* *
6782850 ATTTATTTTT-ATATCATAAAAATTAAATT
1 AATTATTTTTGATATCATAAAAA-TAAAAT
6782879 AATTAT
1 AATTAT
6782885 ATATTAAATA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
28 9 0.32
29 19 0.68
ACGTcount: A:0.44, C:0.05, G:0.02, T:0.50
Consensus pattern (29 bp):
AATTATTTTTGATATCATAAAAATAAAAT
Found at i:6789374 original size:17 final size:18
Alignment explanation
Indices: 6789336--6789374 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
6789326 GAAATTTGGT
* *
6789336 TTATAATAAGATAATGTT
1 TTATAATAAGATAATATC
6789354 TTATAATAA-ATAATATC
1 TTATAATAAGATAATATC
6789371 TTAT
1 TTAT
6789375 CTAGACTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 10 0.53
18 9 0.47
ACGTcount: A:0.46, C:0.03, G:0.05, T:0.46
Consensus pattern (18 bp):
TTATAATAAGATAATATC
Found at i:6790687 original size:42 final size:42
Alignment explanation
Indices: 6790609--6790690 Score: 101
Period size: 42 Copynumber: 2.0 Consensus size: 42
6790599 TGTTTGTTGC
* ** *
6790609 TTGGTTTAAGGTTGTTGATGTAGGAGGCTTAGTGGTTGCTAG
1 TTGGTTTAAGGTGGTTGATGTAGGAGGCACAATGGTTGCTAG
* * *
6790651 TTGGTTTGAGGTGGTTGTTGTAGGATGCACAATGGTTGCT
1 TTGGTTTAAGGTGGTTGATGTAGGAGGCACAATGGTTGCT
6790691 GCCAAGTGCA
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
42 33 1.00
ACGTcount: A:0.16, C:0.06, G:0.38, T:0.40
Consensus pattern (42 bp):
TTGGTTTAAGGTGGTTGATGTAGGAGGCACAATGGTTGCTAG
Found at i:6792816 original size:20 final size:21
Alignment explanation
Indices: 6792793--6792838 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
6792783 CTTTTTTTAA
*
6792793 ATTTTTATGAA-CTTTTATAT
1 ATTTTTATGAATATTTTATAT
6792813 ATTTTT-TGAATATTTTATAT
1 ATTTTTATGAATATTTTATAT
6792833 -TTTTTA
1 ATTTTTA
6792839 AATGATGTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.65
Consensus pattern (21 bp):
ATTTTTATGAATATTTTATAT
Found at i:6792833 original size:18 final size:18
Alignment explanation
Indices: 6792786--6792837 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
6792776 TATCATTCTT
*
6792786 TTTTTAAATTTTTATGAAC
1 TTTTTATATTTTT-TGAAC
6792805 TTTTATATATTTTTTGAA-
1 TTTT-TATATTTTTTGAAC
6792823 TATTTTATATTTTTT
1 T-TTTTATATTTTTT
6792838 AAATGATGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
18 11 0.37
19 11 0.37
20 8 0.27
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (18 bp):
TTTTTATATTTTTTGAAC
Found at i:6795252 original size:98 final size:97
Alignment explanation
Indices: 6795061--6795255 Score: 293
Period size: 98 Copynumber: 2.0 Consensus size: 97
6795051 AAAAATCATA
* * *
6795061 AAGGAAATTTTCCGAGTTTGGGATTATAAAGGAATTGTGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCGTGCCCTAACGTATAGGGTGTGATTTCTT
*
6795126 AAATCTTGGATAAGCATATGTTCTTTTAAAGTG
66 AAATCTTGGATAA-CATATGTTCCTTTAAAGTG
* *
6795159 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATAGGGTGTGTTTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCGTGCCCTAACGTATAGGGTGTGATTTCTT
*
6795224 AAATCTTGGATAA-ATGGATTTTCCTTTAAAGT
66 AAATCTTGGATAACAT--ATGTTCCTTTAAAGT
6795256 TTTTCATTGA
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
96 2 0.02
98 86 0.98
ACGTcount: A:0.29, C:0.11, G:0.23, T:0.37
Consensus pattern (97 bp):
AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCGTGCCCTAACGTATAGGGTGTGATTTCTT
AAATCTTGGATAACATATGTTCCTTTAAAGTG
Found at i:6806668 original size:44 final size:43
Alignment explanation
Indices: 6806600--6807021 Score: 269
Period size: 44 Copynumber: 9.8 Consensus size: 43
6806590 GAAGATGGCA
6806600 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCGAT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCC-AT
* * * *
6806644 AGTCCTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAACC-T
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
* * * ** *
6806686 CAGATCTTATCTCTCTGAAGTTGTAG-AGAGCAGATTGCA-TC-T
1 -AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
* *
6806728 AGTCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAAGTAAG-CA-
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA--AAGCCAT
* *
6806772 AGTCTTATCTTCCTGAAGTTGCAGTGGAGCAGACTAAGTAAG-CA-
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA--AAGCCAT
* * * *
6806816 AGTCTTATC-CTCCTGAAGTGGCAGTGGGGCAGACTGAAGATGGCA-
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGAGCAGA-TTAA-A-GCCAT
* * * *
6806861 AATCTTATCTCTCTGAAGTTGCAGTGGAGAAGATTAAAGTCGAT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAG-CCAT
* * * *
6806905 AGTCCTATCTCCCTGAAGTTGCAGTGGAGCGGATCAAAACC-T
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
** * * *** *
6806947 CAGATCTTATCTTTCTGAAGTTGTAG-AGAGCAGATCGCA-TC-T
1 -AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
* * *
6806989 AGTCTTATCTCCCAGAAATTGCAATGGAGCAGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
6807022 CTAATGAGGC
Statistics
Matches: 302, Mismatches: 58, Indels: 39
0.76 0.15 0.10
Matches are distributed among these distances:
40 35 0.12
41 18 0.06
42 9 0.03
43 25 0.08
44 186 0.62
45 28 0.09
46 1 0.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (43 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAGCCAT
Found at i:6806832 original size:128 final size:129
Alignment explanation
Indices: 6806600--6807025 Score: 449
Period size: 128 Copynumber: 3.3 Consensus size: 129
6806590 GAAGATGGCA
* *
6806600 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA-TTA--AAGCCGATAGTCCTATCTCCCTGAAG
1 AGTCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAAGTAAG-C-ATAGTCCTATCTCCCTGAAG
6806662 TTGCAGTGGAGCGGATCAAAACCTCAGATCTTAT-CTCTCTGAAGTTGTAGAGAGCAGATTGCAT
64 TTGCAGTGGAGCGGATCAAAACCTCAGATCTTATCCTC-CTGAAGTTGTAGAGAGCAGATTGCAT
6806726 CT
128 CT
* *
6806728 AGTCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAAGTAAGCA-AGTCTTATCTTCCTGAAGTT
1 AGTCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAAGTAAGCATAGTCCTATCTCCCTGAAGTT
* * * * * * * *
6806792 GCAGTGGAGCAGA-CTAAGTAAGC-AAG-TCTTATCCTCCTGAAGTGGCAGTGGGGCAGACTGAA
66 GCAGTGGAGCGGATC-AA--AACCTCAGATCTTATCCTCCTGAAGTTGTAG-AGAGCAGATTG--
* *
6806854 GATGGCA
125 CAT--CT
* * * * * *
6806861 AATCTTATCTCTCTGAAGTTGCAGTGGAGAAGATTAAAGT-CG-ATAGTCCTATCTCCCTGAAGT
1 AGTCTTATCTCCCTGAAATTGCAGTGGAGCAGACT-AAGTAAGCATAGTCCTATCTCCCTGAAGT
* * *
6806924 TGCAGTGGAGCGGATCAAAACCTCAGATCTTATCTTTCTGAAGTTGTAGAGAGCAGATCGCATCT
65 TGCAGTGGAGCGGATCAAAACCTCAGATCTTATCCTCCTGAAGTTGTAGAGAGCAGATTGCATCT
* *
6806989 AGTCTTATCTCCCAGAAATTGCAATGGAGCAGACTAA
1 AGTCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAA
6807026 TGAGGCAGAC
Statistics
Matches: 239, Mismatches: 42, Indels: 35
0.76 0.13 0.11
Matches are distributed among these distances:
127 3 0.01
128 109 0.46
129 16 0.07
130 6 0.03
131 8 0.03
132 10 0.04
133 82 0.34
134 5 0.02
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (129 bp):
AGTCTTATCTCCCTGAAATTGCAGTGGAGCAGACTAAGTAAGCATAGTCCTATCTCCCTGAAGTT
GCAGTGGAGCGGATCAAAACCTCAGATCTTATCCTCCTGAAGTTGTAGAGAGCAGATTGCATCT
Found at i:6809203 original size:98 final size:98
Alignment explanation
Indices: 6809087--6809281 Score: 309
Period size: 98 Copynumber: 2.0 Consensus size: 98
6809077 AAAAATCATA
* *
6809087 AAGGAAATTTTCCGAGTTTGGGATTATAAAGGAATTATGCCCTAACGTATTGGGTGTGATTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCATGCCCTAACGTATTGGGTGTGATTTCTT
* *
6809152 AAATCTTGGATAAGCGGATGTTCTTTTAAAGTG
66 AAATCTTGGATAAACGGATGTTCCTTTAAAGTG
* * *
6809185 AAGGAAATATTCCGAGTTTGGGATTCTAAAGGAATCGTGCCCTAACGTATTGGGTGTGTTTTCTT
1 AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCATGCCCTAACGTATTGGGTGTGATTTCTT
* *
6809250 AAATCTTGGATAAATGGATTTTCCTTTAAAGT
66 AAATCTTGGATAAACGGATGTTCCTTTAAAGT
6809282 TTTTCATTAT
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
98 88 1.00
ACGTcount: A:0.28, C:0.11, G:0.24, T:0.37
Consensus pattern (98 bp):
AAGGAAATATTCCGAGTTTGGGATTATAAAGGAATCATGCCCTAACGTATTGGGTGTGATTTCTT
AAATCTTGGATAAACGGATGTTCCTTTAAAGTG
Found at i:6814829 original size:18 final size:18
Alignment explanation
Indices: 6814803--6814837 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
6814793 TTATATATTC
6814803 TTTAGAATTTTTTAAAAT
1 TTTAGAATTTTTTAAAAT
*
6814821 TTTATAATTTTTTAAAA
1 TTTAGAATTTTTTAAAA
6814838 AATATAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
TTTAGAATTTTTTAAAAT
Found at i:6814843 original size:17 final size:19
Alignment explanation
Indices: 6814808--6814849 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
6814798 TATTCTTTAG
**
6814808 AATTTTTTAAAATTTTAT-
1 AATTTTTTAAAATAATATA
6814826 AATTTTTTAAAA-AATATA
1 AATTTTTTAAAATAATATA
6814844 AATTTT
1 AATTTT
6814850 GATTTTTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 3 0.14
18 18 0.86
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
AATTTTTTAAAATAATATA
Found at i:6817095 original size:18 final size:17
Alignment explanation
Indices: 6817054--6817096 Score: 50
Period size: 18 Copynumber: 2.5 Consensus size: 17
6817044 CAATATAGGG
*
6817054 ATCAAATTATGTTAAAA
1 ATCAAATTATATTAAAA
* *
6817071 ATTAAATATATATTAAAC
1 ATCAAAT-TATATTAAAA
6817089 ATCAAATT
1 ATCAAATT
6817097 TGAGCATATT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.53, C:0.07, G:0.02, T:0.37
Consensus pattern (17 bp):
ATCAAATTATATTAAAA
Found at i:6817276 original size:15 final size:14
Alignment explanation
Indices: 6817242--6817298 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 14
6817232 CAAATAACAT
6817242 AAATAA-AATTAGAA
1 AAATAATAATT-GAA
6817256 AAATAATAATTGAA
1 AAATAATAATTGAA
*
6817270 AATATAATATATTCAA
1 AA-ATAATA-ATTGAA
6817286 AAATAATAATTGA
1 AAATAATAATTGA
6817299 GAAAGAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
14 15 0.39
15 16 0.42
16 7 0.18
ACGTcount: A:0.63, C:0.02, G:0.05, T:0.30
Consensus pattern (14 bp):
AAATAATAATTGAA
Found at i:6817290 original size:30 final size:29
Alignment explanation
Indices: 6817254--6817315 Score: 97
Period size: 30 Copynumber: 2.1 Consensus size: 29
6817244 ATAAAATTAG
*
6817254 AAAAATAATAATTGAAAATATAATATATTC
1 AAAAATAATAATTGAAAA-AGAATATATTC
*
6817284 AAAAATAATAATTGAGAAAGAATATATTC
1 AAAAATAATAATTGAAAAAGAATATATTC
6817313 AAA
1 AAA
6817316 TAATTAAAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 13 0.43
30 17 0.57
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.29
Consensus pattern (29 bp):
AAAAATAATAATTGAAAAAGAATATATTC
Found at i:6817907 original size:40 final size:41
Alignment explanation
Indices: 6817785--6817921 Score: 170
Period size: 41 Copynumber: 3.4 Consensus size: 41
6817775 GGCGCTAACG
* *
6817785 GAAAAACGCCGCAATAGGTAAAGTAATAGCGGCGTTTATGA
1 GAAAAACGCCGCAAAAGGTAAAGCAATAGCGGCGTTTATGA
* *
6817826 GAAAAACGCCGCAAAAGGTCAAA-CAGTAGCGGTGTTTATGA
1 GAAAAACGCCGCAAAAGGT-AAAGCAATAGCGGCGTTTATGA
* * *
6817867 GGAAAACGCCGTAAAAGGT-AAGCAATAGCGACGTTTATGA
1 GAAAAACGCCGCAAAAGGTAAAGCAATAGCGGCGTTTATGA
* *
6817907 GAAAAAAGCTGCAAA
1 GAAAAACGCCGCAAA
6817922 GTACTATTTT
Statistics
Matches: 81, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
39 2 0.02
40 26 0.32
41 50 0.62
42 3 0.04
ACGTcount: A:0.42, C:0.15, G:0.26, T:0.17
Consensus pattern (41 bp):
GAAAAACGCCGCAAAAGGTAAAGCAATAGCGGCGTTTATGA
Found at i:6819722 original size:32 final size:32
Alignment explanation
Indices: 6819676--6819749 Score: 139
Period size: 32 Copynumber: 2.3 Consensus size: 32
6819666 CATTTTTTTG
6819676 CGGCGCTTATCAAAACTTGCAAATTGTTTTAA
1 CGGCGCTTATCAAAACTTGCAAATTGTTTTAA
*
6819708 CGGCACTTATCAAAACTTGCAAATTGTTTTAA
1 CGGCGCTTATCAAAACTTGCAAATTGTTTTAA
6819740 CGGCGCTTAT
1 CGGCGCTTAT
6819750 AAGCGCCGCT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (32 bp):
CGGCGCTTATCAAAACTTGCAAATTGTTTTAA
Found at i:6821526 original size:41 final size:40
Alignment explanation
Indices: 6821470--6821603 Score: 134
Period size: 39 Copynumber: 3.4 Consensus size: 40
6821460 AACTTCGAGT
*
6821470 CGATGAGACACTGGGTGTCAATTTACTACTTCGAATTAATT
1 CGATGAGACACTGGGTGTCAATTTA-TACTTCGAATTAATC
* * *
6821511 CGATGAGGCACTGGGTGCCAA-TT-TACTTC-AGTTTAA-C
1 CGATGAGACACTGGGTGTCAATTTATACTTCGA-ATTAATC
* * * *
6821548 CAATGAGACATTGTGTGTCAATTTATTCTTCGAATT-ATC
1 CGATGAGACACTGGGTGTCAATTTATACTTCGAATTAATC
*
6821587 CGATGAGGCACTGGGTG
1 CGATGAGACACTGGGTG
6821604 CCAAACTGGT
Statistics
Matches: 73, Mismatches: 15, Indels: 12
0.73 0.15 0.12
Matches are distributed among these distances:
37 17 0.23
38 13 0.18
39 21 0.29
40 3 0.04
41 19 0.26
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAATTTATACTTCGAATTAATC
Found at i:6825998 original size:2 final size:2
Alignment explanation
Indices: 6825973--6826015 Score: 50
Period size: 2 Copynumber: 21.5 Consensus size: 2
6825963 GTGAGAAAAA
* * * *
6825973 AT AT AA AT AT AA AT AT AC AT AT AT AT AA AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6826015 A
1 A
6826016 AAATGAGTAT
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (2 bp):
AT
Found at i:6826000 original size:16 final size:16
Alignment explanation
Indices: 6825979--6826017 Score: 69
Period size: 16 Copynumber: 2.4 Consensus size: 16
6825969 AAAAATATAA
6825979 ATATAAATATACATAT
1 ATATAAATATACATAT
*
6825995 ATATAAATATATATAT
1 ATATAAATATACATAT
6826011 ATATAAA
1 ATATAAA
6826018 ATGAGTATTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.59, C:0.03, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATAAATATACATAT
Found at i:6826159 original size:3 final size:3
Alignment explanation
Indices: 6826145--6826197 Score: 97
Period size: 3 Copynumber: 17.7 Consensus size: 3
6826135 AAGTGTAAAT
*
6826145 ATA ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
6826193 ATA AT
1 ATA AT
6826198 GAACAAAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:6826885 original size:11 final size:11
Alignment explanation
Indices: 6826869--6826894 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
6826859 CTCCGAATTC
6826869 AAAAAAAAAGA
1 AAAAAAAAAGA
6826880 AAAAAAAAAGA
1 AAAAAAAAAGA
6826891 AAAA
1 AAAA
6826895 GTTAGGGACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAGA
Found at i:6827406 original size:13 final size:13
Alignment explanation
Indices: 6827380--6827412 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
6827370 CCTGGGGTAG
*
6827380 TGGGT-TTAGGTT
1 TGGGTATTAGATT
6827392 TGGGTATTAGATT
1 TGGGTATTAGATT
6827405 TGGGTATT
1 TGGGTATT
6827413 TGGTTTGGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 5 0.26
13 14 0.74
ACGTcount: A:0.15, C:0.00, G:0.36, T:0.48
Consensus pattern (13 bp):
TGGGTATTAGATT
Found at i:6827419 original size:13 final size:13
Alignment explanation
Indices: 6827388--6827431 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
6827378 AGTGGGTTTA
*
6827388 GGTTTGGGTATTA
1 GGTTTGGGTATTT
*
6827401 GATTTGGGTATTT
1 GGTTTGGGTATTT
*
6827414 GGTTTGGGAATTT
1 GGTTTGGGTATTT
6827427 CGGTT
1 -GGTT
6827432 GCAAAAATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
13 22 0.85
14 4 0.15
ACGTcount: A:0.14, C:0.02, G:0.36, T:0.48
Consensus pattern (13 bp):
GGTTTGGGTATTT
Found at i:6827978 original size:130 final size:130
Alignment explanation
Indices: 6827709--6829685 Score: 3073
Period size: 130 Copynumber: 15.2 Consensus size: 130
6827699 TGTGGTTTTA
* * * * * * * *
6827709 GTCTACTCCACTGCAACTTCAAGGAGATAAGGCTGGATGCGATCTGCTCTTCCGTAACTTCATAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * ** * * * * ** *
6827774 ATATATGAT-TCATCGTTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTAGTAGCTTTT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
**
6827838 GTCTGCTCCACTATAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
*
6827903 ATATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
*
6827968 GTCTGCTCCACTGCAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* *
6828033 AGATAAGATCTTGTGGTTTTAATCTGCTCCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* * * *
6828098 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCATAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * ** *
6828163 AGATAAGAT-TTGTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
*
6828227 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
*
6828292 ATATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
*
6828357 GTCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* **
6828422 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGTAACTTCAGATAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* * * * *
6828487 GTCTGCTCCACTACAACTTCAGGAAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGGG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * ** *
6828552 AGATAAGATC-TGTGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTAGTGGCTTTT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
*
6828616 GTCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
*
6828681 ATATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* *
6828746 GTCTGCTCCACTGCAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
*
6828811 AGATAAAATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* * *
6828876 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * * * * ** *
6828941 ATATAAGAT-TTGTGATTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTAGTGGCTTTT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
*
6829005 GTCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* *
6829070 ATATAAGATCTTGTGGTTTTAATCCGCTCTACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* * *
6829135 GTCTGCTCCACTGCAACTTCAGTGAGATAAGGCTGGATGTGATCTGCTCTACTGTAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * *
6829200 AGATAAGATCTTGTGCTTTTAATCCGCTCCACTGTAACTTCAGGTAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* * * * * *
6829265 ATCTGCTCCACTACAACTTCAGGAAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGGG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * ** *
6829330 AGATAAGATC-TGTGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTAGTGGCTTTT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
6829394 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
*
6829459 ATATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* *
6829524 GTCTACTCCACTGCAACTTCAGGGAGATAAGGCTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
**
6829589 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGATAGATAGGATTGGTTTCTTCT
66 AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
* * *
6829654 GTCTGCTCCACTGTAACTTTAGAGAGATAAGA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA
6829686 TCTTGTGGTT
Statistics
Matches: 1687, Mismatches: 156, Indels: 9
0.91 0.08 0.00
Matches are distributed among these distances:
129 527 0.31
130 1160 0.69
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.32
Consensus pattern (130 bp):
GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
Found at i:6828395 original size:389 final size:388
Alignment explanation
Indices: 6827709--6829685 Score: 3441
Period size: 389 Copynumber: 5.1 Consensus size: 388
6827699 TGTGGTTTTA
* * * * * * * * *
6827709 GTCTACTCCACTGCAACTTCAAGGAGATAAGGCTGGATGCGATCTGCTCTTCCGTAACTTCATAG
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
* * ** * *
6827774 ATATATGATTCATCGTTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTAGTAGCTTTTG
66 AGATAAGATTTGTGGTTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTAGTGGCTTTTG
*
6827839 TCTGCTCCACTATAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
131 TCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
6827904 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
196 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
* *
6827969 TCTGCTCCACTGCAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
261 TCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
*
6828034 GATAAGATCTTGTGGTTTTAATCTGCTCCACTGCAACTTCAAGGAGATAGGATTGGTTTCTTCT
326 GATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTC-AGGAGATAGGATTGGTTTCTTCT
*
6828098 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCATAG
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
*
6828163 AGATAAGATTTGTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTAGTGGCTTTTG
66 AGATAAGATTTGTGGTTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTAGTGGCTTTTG
**
6828228 TCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
131 TCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
6828293 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
196 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
6828358 TCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
261 TCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
* *
6828423 GATAAGATCTTGTGGTTTTAATCCGCTCCACTGTAACTTCAGATAGATAGGATTGGTTTCTTCT
326 GATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAG-GAGATAGGATTGGTTTCTTCT
* *
6828487 GTCTGCTCCACTACAACTTCAGGAAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGGG
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
* *
6828552 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTAGTGGCTTTTG
66 AGATAAGATTTGTGGTTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTAGTGGCTTTTG
6828617 TCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
131 TCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
6828682 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
196 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
* * *
6828747 TCTGCTCCACTGCAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAAA
261 TCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
*
6828812 GATAAAATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCT
326 GATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCA-GGAGATAGGATTGGTTTCTTCT
6828876 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
* *
6828941 ATATAAGATTTGTGATTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTAGTGGCTTTTG
66 AGATAAGATTTGTGGTTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTAGTGGCTTTTG
6829006 TCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
131 TCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
*
6829071 TATAAGATCTTGTGGTTTTAATCCGCTCTACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
196 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
* *
6829136 TCTGCTCCACTGCAACTTCAGTGAGATAAGGCTGGATGTGATCTGCTCTACTGTAACTTCAGAGA
261 TCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
* *
6829201 GATAAGATCTTGTGCTTTTAATCCGCTCCACTGTAACTTCAGGTAGATAGGATTGGTTTCTTCT
326 GATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGG-AGATAGGATTGGTTTCTTCT
* * *
6829265 ATCTGCTCCACTACAACTTCAGGAAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGGG
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
* *
6829330 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTTAGGGAGATAGGATTAGTGGCTTTTG
66 AGATAAGATTTGTGGTTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTAGTGGCTTTTG
*
6829395 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
131 TCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
6829460 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
196 TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
*
6829525 TCTACTCCACTGCAACTTCAGGGAGATAAGGCTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
261 TCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
*
6829590 GATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGATAGATAGGATTGGTTTCTTCT
326 GATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAG-GAGATAGGATTGGTTTCTTCT
** * *
6829654 GTCTGCTCCACTGTAACTTTAGAGAGATAAGA
1 GTCTGCTCCACTACAACTTCAGGGAGATAAGA
6829686 TCTTGTGGTT
Statistics
Matches: 1513, Mismatches: 71, Indels: 8
0.95 0.04 0.01
Matches are distributed among these distances:
388 4 0.00
389 1508 1.00
390 1 0.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.32
Consensus pattern (388 bp):
GTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCTACTGTAACTTCAGAG
AGATAAGATTTGTGGTTTTAATCCACTCCACTGCAACTTTAGGGAGATAGGATTAGTGGCTTTTG
TCTGCTCCACTGTAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
TATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG
TCTGCTCCACTGCAACTTCAGGGAGATAAGGCTGGATGTGATCTGCTCTACTGCAACTTCAGAGA
GATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGAGATAGGATTGGTTTCTTCT
Found at i:6829881 original size:219 final size:219
Alignment explanation
Indices: 6828148--6829884 Score: 838
Period size: 215 Copynumber: 8.0 Consensus size: 219
6828138 GATCTACTCT
* * * * *
6828148 ACTGTAACTTCATAGAGATAAGAT-TTGTGGTTTTAATCCACTCCACTGCAACTTCAGGGAGATA
1 ACTGCAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACCTCAGAGAGATA
* ** * *
6828212 GGATTAGTGGCTTTTGTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCT
66 GGATTGGTTTCTTCTGTCTACTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCT
* * *
6828277 ACTGCAACTTCAGAGATATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATA
131 ACTACAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATA
**** *
6828342 GGATTGGTTTCTTCTGTCTGCTCC
196 GGATTACCATCTTCTGCCTGCTCC
* * * * * * * *
6828366 ACTGCAACTTCAGGGAGATAAG-GC---TGGATGTGATCTGCTCTACTGCAACTTCAGAGAGATA
1 ACTGCAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACCTCAGAGAGATA
* * ** ** ** ** * * * *
6828427 AGATCTTGTGGTT-TT-AATCCGCTCCACTGTAACTTCAGATAGATAGGATTGGTTTCTTCTG-T
66 GGA--TTG-GTTTCTTCTGTCTACTCCACTACAACTTCAGGGAGATAAGACTGG----ATGTGAT
* * * * ** * *
6828489 CTGCTCCACTACAACTTCAG-GAAGATAAGA-C---TGGATGTGATCTACTCTACTGTAACTTCA
124 CTGCTCTACTACAACTTCAGAG-AGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCA
* * **** * *
6828549 GGGAGATAAGATCTGTGGTTTTAAT-CC-GCTCC
188 GAGAGATAGGAT-TACCATCTT-CTGCCTGCTCC
* * * * * * * * *
6828581 ACTGCAACTTTAGGGAGATAGGAT-TAGTGGCTTTT-GTCTGCTCCACTGTAACTTCAGGGAGAT
1 ACTGCAACTTCAGAGAGATAAGATCTTGTGG-TTTTAATCCGCTCCACTGCAACCTCAGAGAGAT
* * * ** * * * * * *
6828644 AAGACTGGATGTGATCTG-CT-CT--ACTGCAACTTCAGAGATATAAGATCTTGTGGTTTTAATC
65 AGGATTGG-TTTCTTCTGTCTACTCCACTACAACTTCAGGGAGATAAGA-C---TGGATGTGATC
* * * * * * ** * *
6828705 CGCTCCACTGCAACTTCAGGGAGATAGGA--TTG-GTTTCTTCTGTCTGCTCCACTGCAACTTTA
125 TGCTCTACTACAACTTCAGAGAGATAAGATCTTGTGGTT-TT-AATCCGCTCCACTGCAACTTCA
* * * ** * ** *
6828767 GGGAGATAAGACT-GGATGTGAT--CTGCTCT
188 GAGAGATAGGATTACCATCTTCTGCCTGCTCC
* * * *
6828796 ACTGCAACTTCAGAAAGATAAAATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATA
1 ACTGCAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACCTCAGAGAGATA
* *
6828861 GGATTGGTTTCTTCTGTCTGCTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTACTCT
66 GGATTGGTTTCTTCTGTCTACTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCT
** * * * * *
6828926 ACTGTAACTTCAGAGATATAAGAT-TTGTGATTTTAATCCACTCCACTGCAACTTTAGGGAGATA
131 ACTACAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATA
**** * *
6828990 GGATTAGTGGCTTTTGTCTGCTCC
196 GGATTACCATCTTCTGCCTGCTCC
* * * * * * * * *
6829014 ACTGTAACTTCAGGGAGATAAGA-C---TGGATGTGATCTGCTCTACTGCAACTTCAGAGATATA
1 ACTGCAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACCTCAGAGAGATA
* * ** ** * * * * * *
6829075 AGATCTTGTGGTT-TT-AATCCGCTCTACTGCAACTTCAGGGAGATAGGATTGGTTTCTTCTG-T
66 GGA--TTG-GTTTCTTCTGTCTACTCCACTACAACTTCAGGGAGATAAGACTGG----ATGTGAT
* * * * * * * * * *
6829137 CTGCTCCACTGCAACTTCAGTGAGATAAG-GC---TGGATGTGATCTGCTCTACTGTAACTTCAG
124 CTGCTCTACTACAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAG
* ** * *
6829198 AGAGATAAGA-T-CTTGTGCTTTTAATCC-GCTCC
189 AGAGATAGGATTAC-CAT-CTTCT--GCCTGCTCC
* * * * * * *
6829230 ACTGTAACTTCAG-GTAGATAGGA--TTG-GTTTCTTCTATCTGCTCCACTACAACTTCAG-GAA
1 ACTGCAACTTCAGAG-AGATAAGATCTTGTGGTT-TT-AATCCGCTCCACTGCAACCTCAGAG-A
* * * * * ** * * *
6829290 GATAAGACTGG----ATGTGATCTACTCTACTGTAACTTCAGGGAGATAAGATCTGTGGTTTTAA
62 GATAGGATTGGTTTCTTCTG-TCTACTCCACTACAACTTCAGGGAGATAAGA-C--TGGATGTGA
* * * * * * * * *
6829351 TCCGCTCCACTGCAACTTTAGGGAGATAGGAT-TAGTGGCTTTT-GTCTGCTCCACTGCAACTTC
123 TCTGCTCTACTACAACTTCAGAGAGATAAGATCTTGTGG-TTTTAATCCGCTCCACTGCAACTTC
* * * ** * ** *
6829414 AGGGAGATAAGACT-GGATGTGAT--CTGCTCT
187 AGAGAGATAGGATTACCATCTTCTGCCTGCTCC
* * *
6829444 ACTGCAACTTCAGAGATATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGGAGATA
1 ACTGCAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACCTCAGAGAGATA
* *
6829509 GGATTGGTTTCTTCTGTCTACTCCACTGCAACTTCAGGGAGATAAGGCTGGATGTGATCTGCTCT
66 GGATTGGTTTCTTCTGTCTACTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCT
* *
6829574 ACTGCAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGATAGATA
131 ACTACAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATA
**** *
6829639 GGATTGGTTTCTTCTGTCTGCTCC
196 GGATTACCATCTTCTGCCTGCTCC
* * * *
6829663 ACTGTAACTTTAGAGAGATAAGATCTTGTGGTTTTAATCCTCTCCACTGTAACCTCAGAGAGATA
1 ACTGCAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACCTCAGAGAGATA
* *
6829728 GGATTGGTTTCTTCTGTCTGCTCCACTACAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCT
66 GGATTGGTTTCTTCTGTCTACTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCT
* * *
6829793 ACTACAACTTTAGAGAGATAAGATC-TGTGGTTTTAATCTGCTCCACTGCAATTTCA-AGGAGAT
131 ACTACAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGA-GAGAT
6829856 AGGATTTACCATCTTC-GACCTGCTCC
195 AGGA-TTACCATCTTCTG-CCTGCTCC
6829882 ACT
1 ACT
6829885 ACTGCTTAGG
Statistics
Matches: 1166, Mismatches: 262, Indels: 181
0.72 0.16 0.11
Matches are distributed among these distances:
213 2 0.00
214 83 0.07
215 397 0.34
216 161 0.14
217 34 0.03
218 237 0.20
219 249 0.21
220 3 0.00
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.32
Consensus pattern (219 bp):
ACTGCAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACCTCAGAGAGATA
GGATTGGTTTCTTCTGTCTACTCCACTACAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCT
ACTACAACTTCAGAGAGATAAGATCTTGTGGTTTTAATCCGCTCCACTGCAACTTCAGAGAGATA
GGATTACCATCTTCTGCCTGCTCC
Found at i:6829906 original size:129 final size:130
Alignment explanation
Indices: 6829668--6829907 Score: 310
Period size: 129 Copynumber: 1.9 Consensus size: 130
6829658 GCTCCACTGT
*
6829668 AACTTTAGAGAGATAAGATCTTGTGGTTTTAATCCTCTCCACTGTAACCTCAGAGAGATAGGATT
1 AACTTTAGAGAGATAAGATCTTGTGGTTTTAATCCTCTCCACTGCAACCTCAGAGAGATAGGATT
**** *
6829733 GGTTTCTTCTGTCTGCTCCACTACAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTAC
66 ACCATCTTCTGCCTGCTCCACTACAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTAC
**
6829798 AACTTTAGAGAGATAAGATC-TGTGGTTTTAAT-CTGCTCCACTGCAATTTCA-AGGAGATAGGA
1 AACTTTAGAGAGATAAGATCTTGTGGTTTTAATCCT-CTCCACTGCAACCTCAGA-GAGATAGGA
** *
6829860 TTTACCATCTTC-GACCTGCTCCACTACTGC-TTAGGGAGATAGGACTGG
64 -TTACCATCTTCTG-CCTGCTCCACTACAACTTTAGGGAGATAAGACTGG
6829908 TGGCTTAAAT
Statistics
Matches: 95, Mismatches: 11, Indels: 9
0.83 0.10 0.08
Matches are distributed among these distances:
128 3 0.03
129 52 0.55
130 40 0.42
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (130 bp):
AACTTTAGAGAGATAAGATCTTGTGGTTTTAATCCTCTCCACTGCAACCTCAGAGAGATAGGATT
ACCATCTTCTGCCTGCTCCACTACAACTTTAGGGAGATAAGACTGGATGTGATCTGCTCTACTAC
Found at i:6830029 original size:46 final size:46
Alignment explanation
Indices: 6829968--6830964 Score: 1348
Period size: 46 Copynumber: 21.7 Consensus size: 46
6829958 CGACCTACTT
* * *
6829968 CGCTGCCAAATACAGGAAGACAAGACCTGCTAACTTCGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* *
6830014 CGCTGCCCAATACAGGAAGACAAGATCTGCTAGCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * *
6830060 TGTTGCCAAATACAAGAAGACAAGATCTGCTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * *
6830106 CACTACCAAATACAAGAAGACAAGATCTGCTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
** *
6830152 TACTGCCAAATACAGGAAGATAAGATCTGCTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * * **
6830198 TGCTGCCAAATACAGGAAAATAAGATCTATTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
*
6830244 CGCTGCCAAATACAGGAAGAAAAGATCTGCTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * * *
6830290 TGCTGCCAAATACAGTAAGATAAGATCTACTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * * *
6830336 TGCTGCCAAATACAGGAAGACAAGATCTACTATCTTTGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * * *
6830382 CGCTGCCAAATACAGGAAGACAAGATCTACTAACTTCGATCTATTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
*
6830428 CGCTGTCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* ** *
6830474 CACTGTAAAATACAGGAAGACAAGATCTGCTATCTTTGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * * * *
6830520 CACTGCCAAATATAGGAAGACAAGGTCTGATATCTTCGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * *
6830566 CGCTGCTAAATACAGGAAGACAAGATCTGCTATCTTTGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
*
6830612 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTTGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * *
6830658 CGCTGCCAAATATAGGAAGATAAGATCTGCTATCTTCGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
6830704 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * * *
6830750 CACTGCAAAATACA-GAGAGACAAGATCTGCTATCTTTGATCTACTC
1 CGCTGCCAAATACAGGA-AGACAAGATCTGCTATCTTCGATCCACTC
* *** * * * * *
6830796 CACTATGAAATATAGGAAGACAAGGTCTGCTCTCTTTGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* * * *
6830842 CTCTGCTAAATACAGGAAGACAAGATCTGCTACCTTCGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* *
6830888 CGCTGCCAAATACAGGAAGACAAGATCTACTATCTTCGATCTACTC
1 CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
* *
6830934 TGCTGCCAAATATAGGAAGACAAGATCTGCT
1 CGCTGCCAAATACAGGAAGACAAGATCTGCT
6830965 GCTTCTAGTC
Statistics
Matches: 855, Mismatches: 94, Indels: 4
0.90 0.10 0.00
Matches are distributed among these distances:
45 2 0.00
46 851 1.00
47 2 0.00
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.25
Consensus pattern (46 bp):
CGCTGCCAAATACAGGAAGACAAGATCTGCTATCTTCGATCCACTC
Found at i:6831389 original size:24 final size:24
Alignment explanation
Indices: 6831340--6831391 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
6831330 CCCCATACTC
**
6831340 TAATCTTCAGAGTTCAATCCGTTG
1 TAATCTTCAGAGTTCAATCCACTG
*
6831364 TAATCTTCA-AGGTTCAGTCCACTG
1 TAATCTTCAGA-GTTCAATCCACTG
6831388 TAAT
1 TAAT
6831392 TTTGGGACAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 1 0.04
24 23 0.96
ACGTcount: A:0.27, C:0.21, G:0.15, T:0.37
Consensus pattern (24 bp):
TAATCTTCAGAGTTCAATCCACTG
Found at i:6832403 original size:19 final size:19
Alignment explanation
Indices: 6832381--6832447 Score: 52
Period size: 19 Copynumber: 3.6 Consensus size: 19
6832371 TAGGCTTCTC
6832381 CTTTTTATTTTCTTCTTTT
1 CTTTTTATTTTCTTCTTTT
6832400 CTTTCCTT-TTTTC--CTTTT
1 CTTT--TTATTTTCTTCTTTT
** *
6832418 CTTTTCCTTTTCTTATTTT
1 CTTTTTATTTTCTTCTTTT
6832437 -TTGTTTATTTT
1 CTT-TTTATTTT
6832448 TTTTCTTTTG
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
16 1 0.03
17 5 0.13
18 11 0.29
19 14 0.37
20 5 0.13
21 2 0.05
ACGTcount: A:0.04, C:0.18, G:0.01, T:0.76
Consensus pattern (19 bp):
CTTTTTATTTTCTTCTTTT
Found at i:6838169 original size:6 final size:6
Alignment explanation
Indices: 6838158--6838202 Score: 63
Period size: 6 Copynumber: 7.5 Consensus size: 6
6838148 TCGTGAGAAA
* * *
6838158 AAATAT AAATAT AAATAT ACATAT ATATAT AAATAT ATATAT AAA
1 AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAATAT AAA
6838203 ATGAGTATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (6 bp):
AAATAT
Found at i:6838350 original size:3 final size:3
Alignment explanation
Indices: 6838332--6838455 Score: 142
Period size: 3 Copynumber: 41.3 Consensus size: 3
6838322 AAGTGTAAAT
* * * * * * **
6838332 ATA ATG ATA GTA ATA ATA ATA TTA GTA ATA ATA CTA ATA ATA GTA ACG
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
6838380 ATA ATA ATA ATA ATA ATA ATA ATA GTA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
6838428 ATA ATA ATA ATA ATGA ACA A-A ATA ATA A
1 ATA ATA ATA ATA AT-A ATA ATA ATA ATA A
6838456 AACTACTGAA
Statistics
Matches: 101, Mismatches: 18, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
2 2 0.02
3 97 0.96
4 2 0.02
ACGTcount: A:0.60, C:0.02, G:0.06, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:6844699 original size:17 final size:17
Alignment explanation
Indices: 6844679--6844752 Score: 76
Period size: 17 Copynumber: 4.4 Consensus size: 17
6844669 AAATTACAAC
*
6844679 TCATGCAAAATAATAGT
1 TCATGCAAAATAACAGT
*** *
6844696 TCATATGAAATATCAGT
1 TCATGCAAAATAACAGT
* **
6844713 TCATACTGAATAACAGT
1 TCATGCAAAATAACAGT
6844730 TCATGCAAAATAACAGT
1 TCATGCAAAATAACAGT
6844747 TCATGC
1 TCATGC
6844753 TCCATCATAA
Statistics
Matches: 45, Mismatches: 12, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
17 45 1.00
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.30
Consensus pattern (17 bp):
TCATGCAAAATAACAGT
Found at i:6844706 original size:51 final size:51
Alignment explanation
Indices: 6844647--6844750 Score: 127
Period size: 51 Copynumber: 2.0 Consensus size: 51
6844637 ACATCTATTT
** * *
6844647 ATATGAAATAACAGTTTTTACCAAATTACAACTCATGCAAAATAATAGTTC
1 ATATGAAATAACAGTTCATACCAAATAACAACTCATGCAAAATAACAGTTC
* ** **
6844698 ATATGAAATATCAGTTCATACTGAATAACAGTTCATGCAAAATAACAGTTC
1 ATATGAAATAACAGTTCATACCAAATAACAACTCATGCAAAATAACAGTTC
6844749 AT
1 AT
6844751 GCTCCATCAT
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
51 44 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (51 bp):
ATATGAAATAACAGTTCATACCAAATAACAACTCATGCAAAATAACAGTTC
Found at i:6845136 original size:20 final size:20
Alignment explanation
Indices: 6845111--6845150 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
6845101 GGTCACAATG
6845111 CCAAAATATCTCTTTAACAC
1 CCAAAATATCTCTTTAACAC
6845131 CCAAAATATCTCTTTAACAC
1 CCAAAATATCTCTTTAACAC
6845151 ATTCACAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.30, G:0.00, T:0.30
Consensus pattern (20 bp):
CCAAAATATCTCTTTAACAC
Found at i:6845441 original size:18 final size:18
Alignment explanation
Indices: 6845416--6845466 Score: 66
Period size: 18 Copynumber: 2.8 Consensus size: 18
6845406 ACAATTTAGA
6845416 AAATTAATACAGTTCACC
1 AAATTAATACAGTTCACC
* * *
6845434 AGATTAATACAGATAACC
1 AAATTAATACAGTTCACC
*
6845452 AAATTAACACAGTTC
1 AAATTAATACAGTTC
6845467 GCCATAATAA
Statistics
Matches: 26, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.47, C:0.20, G:0.08, T:0.25
Consensus pattern (18 bp):
AAATTAATACAGTTCACC
Found at i:6850334 original size:24 final size:24
Alignment explanation
Indices: 6850307--6850352 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
6850297 CTTGAAACCA
6850307 TTTCCACAGCTCCTCTCTTCACCC
1 TTTCCACAGCTCCTCTCTTCACCC
6850331 TTTCCACAGCTCCTCTCTTCAC
1 TTTCCACAGCTCCTCTCTTCAC
6850353 TCTCTTCACC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.13, C:0.48, G:0.04, T:0.35
Consensus pattern (24 bp):
TTTCCACAGCTCCTCTCTTCACCC
Found at i:6850394 original size:14 final size:14
Alignment explanation
Indices: 6850375--6850404 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
6850365 ATCGATTGCA
6850375 GCCTCATCATCTCT
1 GCCTCATCATCTCT
*
6850389 GCCTCATCTTCTCT
1 GCCTCATCATCTCT
6850403 GC
1 GC
6850405 TAGTTCACCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.10, C:0.43, G:0.10, T:0.37
Consensus pattern (14 bp):
GCCTCATCATCTCT
Found at i:6850596 original size:14 final size:13
Alignment explanation
Indices: 6850562--6850587 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
6850552 CAAATGGGTA
6850562 GTTTTCTGCAAAT
1 GTTTTCTGCAAAT
6850575 GTTTTCTGCAAAT
1 GTTTTCTGCAAAT
6850588 CAGTTTCTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.15, G:0.15, T:0.46
Consensus pattern (13 bp):
GTTTTCTGCAAAT
Found at i:6854254 original size:29 final size:30
Alignment explanation
Indices: 6854211--6854269 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
6854201 TTGATACCTA
*
6854211 TACTATTATAAATGTTTAATGCGGTACTTG
1 TACTATGATAAATGTTTAATGCGGTACTTG
*
6854241 TACTATGA-AAATGTTTAATGTGGTACTTG
1 TACTATGATAAATGTTTAATGCGGTACTTG
6854270 AATTATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 20 0.74
30 7 0.26
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (30 bp):
TACTATGATAAATGTTTAATGCGGTACTTG
Found at i:6860754 original size:33 final size:34
Alignment explanation
Indices: 6860712--6860934 Score: 124
Period size: 33 Copynumber: 6.3 Consensus size: 34
6860702 CAGATGCGGT
6860712 GGAATCAGCACTTAGCAACCACCAAT-GAATAGG
1 GGAATCAGCACTTAGCAACCACCAATAGAATAGG
*
6860745 GGAATCAGCACTTAGCAACC-CC--TCG----GG
1 GGAATCAGCACTTAGCAACCACCAATAGAATAGG
* *
6860772 GGAATCAGCACTTAGCAACCCCTTTTCACATTTAAAATACGG
1 GGAATCAGCACTTAGCAACCAC----CA-A--TAGAATA-GG
* **
6860814 TGGGATCAGCACTTAGCAACCACCAAT-GGGTAGG
1 -GGAATCAGCACTTAGCAACCACCAATAGAATAGG
*
6860848 GGAATCAGCACTTAGCAACCACCTTTTACATTTAAAATACGG
1 GGAATCAGCACTTAGCAACCACC----A-A--TAGAATA-GG
* * *
6860890 TGGGATCAGCACTTAGCAACCACC-ATTGAATCGG
1 -GGAATCAGCACTTAGCAACCACCAATAGAATAGG
6860924 GGAATCAGCAC
1 GGAATCAGCAC
6860935 ACAACAACCC
Statistics
Matches: 147, Mismatches: 16, Indels: 54
0.68 0.07 0.25
Matches are distributed among these distances:
27 22 0.15
28 1 0.01
30 1 0.01
31 1 0.01
32 3 0.02
33 52 0.35
34 4 0.03
35 6 0.04
36 1 0.01
37 3 0.02
38 2 0.01
39 2 0.01
40 1 0.01
41 2 0.01
42 4 0.03
43 42 0.29
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.20
Consensus pattern (34 bp):
GGAATCAGCACTTAGCAACCACCAATAGAATAGG
Found at i:6860777 original size:27 final size:27
Alignment explanation
Indices: 6860743--6860794 Score: 104
Period size: 27 Copynumber: 1.9 Consensus size: 27
6860733 CCAATGAATA
6860743 GGGGAATCAGCACTTAGCAACCCCTCG
1 GGGGAATCAGCACTTAGCAACCCCTCG
6860770 GGGGAATCAGCACTTAGCAACCCCT
1 GGGGAATCAGCACTTAGCAACCCCT
6860795 TTTCACATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.27, C:0.33, G:0.25, T:0.15
Consensus pattern (27 bp):
GGGGAATCAGCACTTAGCAACCCCTCG
Found at i:6860782 original size:102 final size:103
Alignment explanation
Indices: 6860606--6860867 Score: 393
Period size: 102 Copynumber: 2.6 Consensus size: 103
6860596 TAATCGTTAT
* * ** *
6860606 CGGTGGATTCCGCACTTAGCAACCACCAATGAATCA-GGGAATCAGCACACAGCAACCCCTTGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAAT-AGGGGAATCAGCACTTAGCAACCCCTCGGG
* * *
6860670 GGAATCAGCACTTAGCAACCCC-CTTCACATTTCAGATG
65 GGAATCAGCACTTAGCAACCCCTCTTCACATTTAAAATA
6860708 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGGG
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGGG
*
6860773 GAATCAGCACTTAGCAACCCCTTTTCACATTTAAAATA
66 GAATCAGCACTTAGCAACCCCTCTTCACATTTAAAATA
* **
6860811 CGGTGGGATCAGCACTTAGCAACCACCAATGGGTAGGGGAATCAGCACTTAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACC
6860868 ACCTTTTACA
Statistics
Matches: 146, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
101 1 0.01
102 79 0.54
103 66 0.45
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.19
Consensus pattern (103 bp):
CGGTGGAATCAGCACTTAGCAACCACCAATGAATAGGGGAATCAGCACTTAGCAACCCCTCGGGG
GAATCAGCACTTAGCAACCCCTCTTCACATTTAAAATA
Found at i:6860879 original size:76 final size:76
Alignment explanation
Indices: 6860770--6860948 Score: 279
Period size: 76 Copynumber: 2.4 Consensus size: 76
6860760 CAACCCCTCG
6860770 GGGGAATCAGCACTTAGCAACCCCTTTTCACATTTAAAATACGGTGGGATCAGCACTTAGCAACC
1 GGGGAATCAGCACTTAGCAACCCCTTTTCACATTTAAAATACGGTGGGATCAGCACTTAGCAACC
**
6860835 ACCAATGGGTA
66 ACCAATGAATA
6860846 GGGGAATCAGCACTTAGCAACCACCTTTT-ACATTTAAAATACGGTGGGATCAGCACTTAGCAAC
1 GGGGAATCAGCACTTAGCAACC-CCTTTTCACATTTAAAATACGGTGGGATCAGCACTTAGCAAC
* *
6860910 CACCATTGAATC
65 CACCAATGAATA
** *
6860922 GGGGAATCAGCACACAACAACCCCTTT
1 GGGGAATCAGCACTTAGCAACCCCTTT
6860949 ATATGCAATA
Statistics
Matches: 95, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
75 5 0.05
76 84 0.88
77 6 0.06
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (76 bp):
GGGGAATCAGCACTTAGCAACCCCTTTTCACATTTAAAATACGGTGGGATCAGCACTTAGCAACC
ACCAATGAATA
Found at i:6864308 original size:40 final size:40
Alignment explanation
Indices: 6864261--6864365 Score: 133
Period size: 40 Copynumber: 2.6 Consensus size: 40
6864251 ATAAAAAATA
*
6864261 CCGCTAAAAATCGAGCATTAGCGGCGCTTTACA-TAAAACG
1 CCGCTAAAAATCGAGCATTAGCGGCGCTTTA-AGGAAAACG
* * *
6864301 CCGCTAAAGATCGAGTATTAGCGGCGCTTTAAGGAAAGCG
1 CCGCTAAAAATCGAGCATTAGCGGCGCTTTAAGGAAAACG
* *
6864341 CTGCTAAAAAT-GGGCATTAGCGGCG
1 CCGCTAAAAATCGAGCATTAGCGGCG
6864366 TTTTTTTGCA
Statistics
Matches: 56, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 13 0.23
40 43 0.77
ACGTcount: A:0.31, C:0.22, G:0.27, T:0.20
Consensus pattern (40 bp):
CCGCTAAAAATCGAGCATTAGCGGCGCTTTAAGGAAAACG
Found at i:6864473 original size:41 final size:41
Alignment explanation
Indices: 6864414--6864610 Score: 313
Period size: 41 Copynumber: 4.8 Consensus size: 41
6864404 CTGACTTTTT
* *
6864414 GGGGCTTTAGCGGGGTTTTTGACAAAGCGCCGCTAATGCTC
1 GGGGCTTTAGCGGCGTTTTTGACAAAGCGCCGCTAACGCTC
** *
6864455 ATGGCTTTAGCGGCGTTTTTGAGAAAGCGCCGCTAACGCTC
1 GGGGCTTTAGCGGCGTTTTTGACAAAGCGCCGCTAACGCTC
6864496 GGGGCTTTAGCGGCGTTTTTGACAAAGCGCCGCTAACGCTC
1 GGGGCTTTAGCGGCGTTTTTGACAAAGCGCCGCTAACGCTC
* *
6864537 GGGGATTTAGCGACGTTTTTGACAAAGCGCCGCTAACGCTC
1 GGGGCTTTAGCGGCGTTTTTGACAAAGCGCCGCTAACGCTC
* *
6864578 GGGGCTTTAGCGGCATTTTTGACAAAGTGCCGC
1 GGGGCTTTAGCGGCGTTTTTGACAAAGCGCCGC
6864611 AAAAATATTT
Statistics
Matches: 142, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 142 1.00
ACGTcount: A:0.19, C:0.24, G:0.31, T:0.26
Consensus pattern (41 bp):
GGGGCTTTAGCGGCGTTTTTGACAAAGCGCCGCTAACGCTC
Found at i:6864966 original size:14 final size:15
Alignment explanation
Indices: 6864938--6864970 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
6864928 AAGGTTTATA
6864938 GATTATGGAATTAGG
1 GATTATGGAATTAGG
6864953 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
6864967 GATT
1 GATT
6864971 TTGGTTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:6865007 original size:14 final size:14
Alignment explanation
Indices: 6864990--6865032 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
6864980 GGGTTGTGAT
6864990 TTAGGGTTTAAGGG
1 TTAGGGTTTAAGGG
* * *
6865004 TTAGAGATTAAGAG
1 TTAGGGTTTAAGGG
*
6865018 TTAGGGTTTTAGGG
1 TTAGGGTTTAAGGG
6865032 T
1 T
6865033 GTAATAGATT
Statistics
Matches: 22, Mismatches: 7, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.26, C:0.00, G:0.37, T:0.37
Consensus pattern (14 bp):
TTAGGGTTTAAGGG
Found at i:6865300 original size:14 final size:14
Alignment explanation
Indices: 6865278--6865329 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
6865268 GTAGGGATTT
6865278 AAGGTTTAGAGGTTA
1 AAGG-TTAGAGGTTA
*
6865293 AAGGTTAGACGTTA
1 AAGGTTAGAGGTTA
**
6865307 TGGGTTAGAGGTTTA
1 AAGGTTAGAGG-TTA
*
6865322 AGGGTTAG
1 AAGGTTAG
6865330 GGATTTAGGG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
14 17 0.55
15 14 0.45
ACGTcount: A:0.29, C:0.02, G:0.37, T:0.33
Consensus pattern (14 bp):
AAGGTTAGAGGTTA
Found at i:6865660 original size:23 final size:24
Alignment explanation
Indices: 6865624--6865718 Score: 113
Period size: 23 Copynumber: 3.9 Consensus size: 24
6865614 TTGATATATT
6865624 TAAATATTAGTTTAAATAAAATTAA
1 TAAATA-TAGTTTAAATAAAATTAA
*
6865649 TAAATA-AGTTTAAATAAAATATATT
1 TAAATATAGTTTAAATAAAAT-TA-A
* *
6865674 TAAATATTAATTTAAATAGAATTAA
1 TAAATA-TAGTTTAAATAAAATTAA
6865699 TAAATATA-TTTAAATAAAAT
1 TAAATATAGTTTAAATAAAAT
6865719 AATTTTTGTT
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
23 25 0.41
24 4 0.07
25 18 0.30
26 2 0.03
27 12 0.20
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (24 bp):
TAAATATAGTTTAAATAAAATTAA
Found at i:6865672 original size:50 final size:50
Alignment explanation
Indices: 6865617--6865723 Score: 173
Period size: 50 Copynumber: 2.2 Consensus size: 50
6865607 AAACCATTTG
*
6865617 ATATATTTAAATATTAGTTTAAATAAAATTAATAAATA-AGTTTAAATAAA
1 ATATATTTAAATATTAATTTAAATAAAATTAATAAATATA-TTTAAATAAA
*
6865667 ATATATTTAAATATTAATTTAAATAGAATTAATAAATATATTTAAATAAA
1 ATATATTTAAATATTAATTTAAATAAAATTAATAAATATATTTAAATAAA
6865717 ATA-ATTT
1 ATATATTT
6865724 TTGTTCAAAA
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
49 4 0.07
50 49 0.91
51 1 0.02
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (50 bp):
ATATATTTAAATATTAATTTAAATAAAATTAATAAATATATTTAAATAAA
Found at i:6869649 original size:43 final size:43
Alignment explanation
Indices: 6869602--6869684 Score: 121
Period size: 43 Copynumber: 1.9 Consensus size: 43
6869592 TTATATCTTT
* * *
6869602 GATTTCCTTGATTAAGTAAATGTATTATATCTTTTATTACCAA
1 GATTTACTTGATTAAGAAAATGCATTATATCTTTTATTACCAA
* *
6869645 GATTTACTTGATTAAGAAAATGCATTGTATGTTTTATTAC
1 GATTTACTTGATTAAGAAAATGCATTATATCTTTTATTAC
6869685 TTTGCATATG
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.46
Consensus pattern (43 bp):
GATTTACTTGATTAAGAAAATGCATTATATCTTTTATTACCAA
Found at i:6869993 original size:43 final size:42
Alignment explanation
Indices: 6869945--6870193 Score: 327
Period size: 43 Copynumber: 5.8 Consensus size: 42
6869935 GATATGTTAT
*
6869945 TAGCGGCGTTTTTGTGAAAAGCGCCGCTAAAGGTCTTGATCTA
1 TAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGTCTTGATCTA
* * * * *
6869988 TAGCGGCGTTTGTGAGAAGAGTGTCACTAAAGGTCTTGAGCTA
1 TAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGTCTTGATCTA
* ** *
6870031 TAGCGACGTTTGTTGGAAAAGCGCCATTAAAGATCTTGATCTA
1 TAGCGGCGTTTG-TGGAAAAGCGCCGCTAAAGGTCTTGATCTA
*
6870074 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCTTGAGCTA
1 TAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGTCTTGATCTA
* * *
6870117 TAGCGGCGTTTGTGGAGAAGCGCTGCTAAAAGTCTTGATCTA
1 TAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCTTGATCTA
6870159 TAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTC
1 TAGCGGCGTTTGTGG-AAAAGCGCCGCTAAAGGTC
6870194 GTGGTTTTAA
Statistics
Matches: 177, Mismatches: 26, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
42 41 0.23
43 134 0.76
44 2 0.01
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (42 bp):
TAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCTTGATCTA
Found at i:6873724 original size:9 final size:9
Alignment explanation
Indices: 6873707--6873743 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
6873697 TAAGTTTTCG
6873707 AATTCGAAT
1 AATTCGAAT
*
6873716 AACTCGAAT
1 AATTCGAAT
*
6873725 AATTCAAAT
1 AATTCGAAT
6873734 AATTCGAAT
1 AATTCGAAT
6873743 A
1 A
6873744 TCAAACTATA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.49, C:0.14, G:0.08, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:6873992 original size:30 final size:31
Alignment explanation
Indices: 6873956--6874015 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 31
6873946 AAACCTTTTA
*
6873956 TTTTCCCCCAAAATTTTTACTCCC-TCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
** *
6873986 TTTTCCCTTAAAACTTTTATTCCCTTCCCA
1 TTTTCCCCCAAAACTTTTACTCCCTTCCCA
6874016 TCCCATCTCC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.20, C:0.38, G:0.00, T:0.42
Consensus pattern (31 bp):
TTTTCCCCCAAAACTTTTACTCCCTTCCCAC
Found at i:6881477 original size:52 final size:52
Alignment explanation
Indices: 6881403--6881509 Score: 137
Period size: 51 Copynumber: 2.1 Consensus size: 52
6881393 AAAAATGGTG
* *
6881403 AAATGGAGAAATAGGAAAAATTTTGAAAATTATTATGGTTTTCTCCAAAATGA
1 AAATGGAGAAATAGGAAAAA-TTTGAAAATGAATATGGTTTTCTCCAAAATGA
* * *
6881456 AAATGGA-AAA-ATGAAATAATTTGGAAATGAATGTGGTTTTCTCCAAAATGA
1 AAATGGAGAAATAGGAAA-AATTTGAAAATGAATATGGTTTTCTCCAAAATGA
6881507 AAA
1 AAA
6881510 AGAAAAAGAA
Statistics
Matches: 48, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
51 36 0.75
52 5 0.10
53 7 0.15
ACGTcount: A:0.47, C:0.06, G:0.18, T:0.30
Consensus pattern (52 bp):
AAATGGAGAAATAGGAAAAATTTGAAAATGAATATGGTTTTCTCCAAAATGA
Found at i:6882922 original size:31 final size:32
Alignment explanation
Indices: 6882886--6882950 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
6882876 CTTAGATAAT
6882886 TTTAAAGAG-TTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
6882917 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
1 TTTAAAGAGTTTTTATTAGGATTCAATTACTC
6882949 TT
1 TT
6882951 GTAATTTGCC
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 9 0.27
32 24 0.73
ACGTcount: A:0.31, C:0.09, G:0.12, T:0.48
Consensus pattern (32 bp):
TTTAAAGAGTTTTTATTAGGATTCAATTACTC
Found at i:6885080 original size:27 final size:27
Alignment explanation
Indices: 6885050--6885110 Score: 79
Period size: 26 Copynumber: 2.3 Consensus size: 27
6885040 TATACTTTTT
*
6885050 TGTGTTTAATGTCCCGACAAACTATCC
1 TGTGTTTAATGTCCCGACAAACTACCC
* * *
6885077 TGTG-TTCATGTCTCGACGAACTACCC
1 TGTGTTTAATGTCCCGACAAACTACCC
6885103 TGTGTTTA
1 TGTGTTTA
6885111 CTATCCCAAC
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
26 22 0.79
27 6 0.21
ACGTcount: A:0.21, C:0.25, G:0.18, T:0.36
Consensus pattern (27 bp):
TGTGTTTAATGTCCCGACAAACTACCC
Found at i:6885333 original size:27 final size:27
Alignment explanation
Indices: 6885303--6885387 Score: 100
Period size: 27 Copynumber: 3.1 Consensus size: 27
6885293 ATCTACCGTA
*
6885303 TGTCTCGACAGACTACCCCGTGTTTAC
1 TGTCTCGACAGACTACCCCGTATTTAC
* * **
6885330 TGTCTCAACGGACTACCCTATATTTAC
1 TGTCTCGACAGACTACCCCGTATTTAC
*
6885357 TGTCTCGACTA-ACTACACCGTATTTAC
1 TGTCTCGAC-AGACTACCCCGTATTTAC
6885384 TGTC
1 TGTC
6885388 CCGATGAACT
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.22, C:0.31, G:0.14, T:0.33
Consensus pattern (27 bp):
TGTCTCGACAGACTACCCCGTATTTAC
Found at i:6887899 original size:21 final size:21
Alignment explanation
Indices: 6887875--6887914 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
6887865 GTAAAATAAA
6887875 AAAGAA-ACAAACAAACAAAAC
1 AAAGAAGA-AAACAAACAAAAC
*
6887896 AAAGAAGAAAAGAAACAAA
1 AAAGAAGAAAACAAACAAA
6887915 GAGTAATTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 16 0.94
22 1 0.06
ACGTcount: A:0.78, C:0.12, G:0.10, T:0.00
Consensus pattern (21 bp):
AAAGAAGAAAACAAACAAAAC
Found at i:6888367 original size:11 final size:11
Alignment explanation
Indices: 6888351--6888375 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
6888341 GAATTTACGG
6888351 TAGAAATTGAA
1 TAGAAATTGAA
6888362 TAGAAATTGAA
1 TAGAAATTGAA
6888373 TAG
1 TAG
6888376 GAAAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.20, T:0.28
Consensus pattern (11 bp):
TAGAAATTGAA
Found at i:6894555 original size:15 final size:16
Alignment explanation
Indices: 6894521--6894563 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
6894511 TGTTACTTAT
*
6894521 TTTTTATTATTATGCA
1 TTTTTATTATTATCCA
6894537 TTTTTATT-TTATCC-
1 TTTTTATTATTATCCA
*
6894551 CTTTTATTATTAT
1 TTTTTATTATTAT
6894564 TGTTATTATT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 7 0.29
15 9 0.38
16 8 0.33
ACGTcount: A:0.21, C:0.09, G:0.02, T:0.67
Consensus pattern (16 bp):
TTTTTATTATTATCCA
Found at i:6896085 original size:5 final size:5
Alignment explanation
Indices: 6896075--6896103 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
6896065 AATATTATTT
6896075 ATTAA ATTAA ATTAA ATTAA ATT-A ATTAA
1 ATTAA ATTAA ATTAA ATTAA ATTAA ATTAA
6896104 TTTTTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
4 4 0.17
5 19 0.83
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATTAA
Found at i:6898832 original size:24 final size:24
Alignment explanation
Indices: 6898800--6898867 Score: 68
Period size: 24 Copynumber: 2.8 Consensus size: 24
6898790 TTTACCTAAA
6898800 TTTTATAATTTCTT-TATTTTATCT
1 TTTTATAATTT-TTATATTTTATCT
* **
6898824 TTTTGTAATTTTTATATTTTATAA
1 TTTTATAATTTTTATATTTTATCT
*
6898848 TTTTA-ATTCTTTTATATTTT
1 TTTTATAAT-TTTTATATTTT
6898868 TTAATAATTT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
23 4 0.11
24 33 0.89
ACGTcount: A:0.24, C:0.04, G:0.01, T:0.71
Consensus pattern (24 bp):
TTTTATAATTTTTATATTTTATCT
Found at i:6908133 original size:14 final size:14
Alignment explanation
Indices: 6908114--6908140 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
6908104 TAATCAACAA
6908114 TTATTTAATTAAAT
1 TTATTTAATTAAAT
6908128 TTATTTAATTAAA
1 TTATTTAATTAAA
6908141 AATTAATTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TTATTTAATTAAAT
Found at i:6909678 original size:24 final size:24
Alignment explanation
Indices: 6909629--6909678 Score: 57
Period size: 23 Copynumber: 2.1 Consensus size: 24
6909619 TAATTTATTA
* **
6909629 TAATTATTTAATTTTTTTTCTAAT
1 TAATTATTTAAATTTTAATCTAAT
6909653 TAATTA-TTAAATTTTAATCTATAT
1 TAATTATTTAAATTTTAATCTA-AT
6909677 TA
1 TA
6909679 TCTACTTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
23 12 0.55
24 10 0.45
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (24 bp):
TAATTATTTAAATTTTAATCTAAT
Found at i:6914842 original size:25 final size:27
Alignment explanation
Indices: 6914797--6914852 Score: 82
Period size: 25 Copynumber: 2.1 Consensus size: 27
6914787 TGTATTCATA
6914797 TTTATATACATAAAATTTAATAAATATC
1 TTTATATACATAAAATTTAATAAATA-C
6914825 TTTATA-ACA-AAAA-TTAATAAATAC
1 TTTATATACATAAAATTTAATAAATAC
6914849 TTTA
1 TTTA
6914853 GTTGCTACTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
24 5 0.18
25 10 0.36
26 4 0.14
27 3 0.11
28 6 0.21
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (27 bp):
TTTATATACATAAAATTTAATAAATAC
Found at i:6924702 original size:16 final size:16
Alignment explanation
Indices: 6924681--6924711 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6924671 GCCCGATTTT
6924681 ATAGAAAAAATAAAAA
1 ATAGAAAAAATAAAAA
*
6924697 ATAGAATAAATAAAA
1 ATAGAAAAAATAAAA
6924712 GGTTCCTCCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.16
Consensus pattern (16 bp):
ATAGAAAAAATAAAAA
Found at i:6925526 original size:13 final size:13
Alignment explanation
Indices: 6925508--6925563 Score: 82
Period size: 13 Copynumber: 4.5 Consensus size: 13
6925498 TAGATTTTTC
6925508 CTAAATATTATCA
1 CTAAATATTATCA
*
6925521 CTAAATA--AT-T
1 CTAAATATTATCA
6925531 CTAAATATTATCA
1 CTAAATATTATCA
6925544 CTAAATATTATCA
1 CTAAATATTATCA
6925557 CTAAATA
1 CTAAATA
6925564 ATTCTAAATT
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
10 7 0.18
11 2 0.05
12 2 0.05
13 27 0.71
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (13 bp):
CTAAATATTATCA
Found at i:6926164 original size:14 final size:13
Alignment explanation
Indices: 6926141--6926171 Score: 53
Period size: 14 Copynumber: 2.3 Consensus size: 13
6926131 TCTATATTCA
6926141 TTTTTTTTATTTT
1 TTTTTTTTATTTT
6926154 TTTTGTTTTATTTT
1 TTTT-TTTTATTTT
6926168 TTTT
1 TTTT
6926172 CAAACGTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 4 0.24
14 13 0.76
ACGTcount: A:0.06, C:0.00, G:0.03, T:0.90
Consensus pattern (13 bp):
TTTTTTTTATTTT
Found at i:6936782 original size:88 final size:88
Alignment explanation
Indices: 6936654--6936847 Score: 264
Period size: 88 Copynumber: 2.2 Consensus size: 88
6936644 AATTAAGTCC
* * * *
6936654 TTTTTTTTGCATTCAATTGGGTACTTGAACTTTCAGAATGCATCAAAAAGACCCTCAAAATTTTC
1 TTTTTTTTGCAATCAATTAGGTACTTGAAATTTCAAAATGCATCAAAAAGACCCTCAAAATTTTC
*
6936719 CAAAAAAAGCAATTAAGCCCCTT
66 CAAAAAAAGCAATTAAACCCCTT
* *
6936742 TTTTTTTTGCAATCAATTAGGTACTT-AAATTGTCAAAATGCATCAAAAAGACTCTCAAATTTTT
1 TTTTTTTTGCAATCAATTAGGTACTTGAAATT-TCAAAATGCATCAAAAAGACCCTCAAAATTTT
* * *
6936806 TCAAAAAAGGCAATTAAACTCCTT
65 CCAAAAAAAGCAATTAAACCCCTT
* *
6936830 TTTTTTATGCACTCAATT
1 TTTTTTTTGCAATCAATT
6936848 GCCAAAATGC
Statistics
Matches: 93, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
87 4 0.04
88 89 0.96
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.37
Consensus pattern (88 bp):
TTTTTTTTGCAATCAATTAGGTACTTGAAATTTCAAAATGCATCAAAAAGACCCTCAAAATTTTC
CAAAAAAAGCAATTAAACCCCTT
Found at i:6936993 original size:10 final size:9
Alignment explanation
Indices: 6936952--6937110 Score: 60
Period size: 10 Copynumber: 17.6 Consensus size: 9
6936942 ACATGAGACA
6936952 AAAAATTAT
1 AAAAATTAT
**
6936961 AAAAAAAATT
1 AAAAATTA-T
** *
6936971 AAAAACAAC
1 AAAAATTAT
6936980 AAAAATTAT
1 AAAAATTAT
6936989 AAAAATTATT
1 AAAAATTA-T
**
6936999 AAACTTTAAT
1 AAAAATT-AT
6937009 AAAAA-TAT
1 AAAAATTAT
** *
6937017 AAATTTTTT
1 AAAAATTAT
6937026 AAAAATTAAT
1 AAAAATT-AT
6937036 AAAAA-T-T
1 AAAAATTAT
* *
6937043 AGAAA-GA-
1 AAAAATTAT
6937050 AAAAA-TAT
1 AAAAATTAT
*
6937058 AAAAATATTT
1 AAAAAT-TAT
*
6937068 AAAATTTAT
1 AAAAATTAT
*
6937077 AAAAAATTGT
1 -AAAAATTAT
*
6937087 AAAATTTTAT
1 AAAA-ATTAT
*
6937097 AAAAATCAT
1 AAAAATTAT
6937106 AAAAA
1 AAAAA
6937111 AGCATAAAAT
Statistics
Matches: 109, Mismatches: 30, Indels: 22
0.68 0.19 0.14
Matches are distributed among these distances:
7 10 0.09
8 10 0.09
9 43 0.39
10 45 0.41
11 1 0.01
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.31
Consensus pattern (9 bp):
AAAAATTAT
Found at i:6937077 original size:19 final size:21
Alignment explanation
Indices: 6937055--6937102 Score: 75
Period size: 19 Copynumber: 2.4 Consensus size: 21
6937045 AAAGAAAAAA
6937055 TATAAAAATATT-TAAAA-TT
1 TATAAAAATATTGTAAAATTT
6937074 TATAAAAA-ATTGTAAAATTT
1 TATAAAAATATTGTAAAATTT
6937094 TATAAAAAT
1 TATAAAAAT
6937103 CATAAAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 3 0.12
19 13 0.50
20 10 0.38
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (21 bp):
TATAAAAATATTGTAAAATTT
Done.