Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 27 of 173
Found at i:7281955 original size:88 final size:88
Alignment explanation
Indices: 7281791--7281958 Score: 205
Period size: 88 Copynumber: 1.9 Consensus size: 88
7281781 CAGATCAGTG
* *
7281791 AAGATAGAAGATCTTGCCTTCCTGCACTGACAGCGAAACAGATCGAGGACACCAGCCTTACCTCC
1 AAGATAGAAGATCTGGCCTTCCTGCACTGACAGCGAAACAGATCGAAGACACCAGCCTTACCTCC
**
7281856 CTCGGTTGCAGTGGAGCAGGTTA
66 CTCGGCAGCAGTGGAGCAGGTTA
* * * ** *
7281879 AAGATAGCAGATCTGGCCTTCCTGCA-TAGGCAGCGAAACAGATCGAAGATACCA-ATTCTATCT
1 AAGATAGAAGATCTGGCCTTCCTGCACT-GACAGCGAAACAGATCGAAGACACCAGCCT-TACCT
*
7281942 CCCTGGGCAGCAGTGGA
64 CCCTCGGCAGCAGTGGA
7281959 ATAGGTTGAA
Statistics
Matches: 67, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
87 2 0.03
88 65 0.97
ACGTcount: A:0.29, C:0.26, G:0.25, T:0.20
Consensus pattern (88 bp):
AAGATAGAAGATCTGGCCTTCCTGCACTGACAGCGAAACAGATCGAAGACACCAGCCTTACCTCC
CTCGGCAGCAGTGGAGCAGGTTA
Found at i:7282221 original size:132 final size:132
Alignment explanation
Indices: 7281949--7282223 Score: 354
Period size: 132 Copynumber: 2.1 Consensus size: 132
7281939 TCTCCCTGGG
* * * * * *
7281949 CAGCAGTGGAATAGGTTGAATATTGTAAGTCCTATCTCCTTGGACAACAGTGGAATAGGTTGAAG
1 CAGCAGTGGAATAGGATGAAGATTGTAAGCCCTATCTCCCTGGACAACAGCGGAATAGGTTAAAG
* * * * *
7282014 ATTGTAAGTCCTATCTCTCTAGACAGTAGGGGAATAGGTTGAAGATTATAAGCCCTATCTCCCTG
66 ATTGTAAGTCATATCTCCCTAGACAGCAGGGGAATAGGTTGAAGATTATAAGCCATATCTCCCTA
*
7282079 GA
131 AA
* *
7282081 CAGCAGTGGAATAGGATGAAGATTGTAAGCCCTATCTCCCTGGACAGCAGCGGACTAGGTTAAAG
1 CAGCAGTGGAATAGGATGAAGATTGTAAGCCCTATCTCCCTGGACAACAGCGGAATAGGTTAAAG
* * * * *
7282146 ATTGTAAGTCATATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGT-AGATCATGTCTCCCT
66 ATTGTAAGTCATATCTCCCTAGACAGCAGGGGAATAGGTTGAAGATTATAAG-CCATATCTCCCT
7282210 AAA
130 AAA
*
7282213 CAGTAGTGGAA
1 CAGCAGTGGAA
7282224 CAGATCGAAG
Statistics
Matches: 122, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
131 2 0.02
132 120 0.98
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.27
Consensus pattern (132 bp):
CAGCAGTGGAATAGGATGAAGATTGTAAGCCCTATCTCCCTGGACAACAGCGGAATAGGTTAAAG
ATTGTAAGTCATATCTCCCTAGACAGCAGGGGAATAGGTTGAAGATTATAAGCCATATCTCCCTA
AA
Found at i:7282223 original size:44 final size:44
Alignment explanation
Indices: 7281936--7282195 Score: 376
Period size: 44 Copynumber: 5.9 Consensus size: 44
7281926 GATACCAATT
* *
7281936 CTATCTCCCTGGGCAGCAGTGGAATAGGTTGAATATTGTAAGTC
1 CTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* *
7281980 CTATCTCCTTGGACAACAGTGGAATAGGTTGAAGATTGTAAGTC
1 CTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * * * * *
7282024 CTATCTCTCTAGACAGTAGGGGAATAGGTTGAAGATTATAAGCC
1 CTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* *
7282068 CTATCTCCCTGGACAGCAGTGGAATAGGATGAAGATTGTAAGCC
1 CTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTAAGTC
* * *
7282112 CTATCTCCCTGGACAGCAGCGGACTAGGTTAAAGATTGTAAGTC
1 CTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTAAGTC
*
7282156 ATATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTA
1 CTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTA
7282196 GATCATGTCT
Statistics
Matches: 189, Mismatches: 27, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 189 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (44 bp):
CTATCTCCCTGGACAGCAGTGGAATAGGTTGAAGATTGTAAGTC
Found at i:7282234 original size:44 final size:44
Alignment explanation
Indices: 7281949--7282235 Score: 157
Period size: 44 Copynumber: 6.5 Consensus size: 44
7281939 TCTCCCTGGG
* * * * * * **
7281949 CAGCAGTGGAATAGGTTGAATATTGTAAGTCCTATCTCCTTGGA
1 CAGCAGTGGAACAGATCGAAGATTGTAAGTCATATCTCCCTAAA
* * * * * * *
7281993 CAACAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCTCTAGA
1 CAGCAGTGGAACAGATCGAAGATTGTAAGTCATATCTCCCTAAA
* * * * * * * * **
7282037 CAGTAGGGGAATAGGTTGAAGATTATAAGCCCTATCTCCCTGGA
1 CAGCAGTGGAACAGATCGAAGATTGTAAGTCATATCTCCCTAAA
* * * **
7282081 CAGCAGTGGAATAGGAT-GAAGATTGTAAGCCCTATCTCCCTGGA
1 CAGCAGTGGAACA-GATCGAAGATTGTAAGTCATATCTCCCTAAA
* * ** **
7282125 CAGCAGCGG-ACTAGGTTAAAGATTGTAAGTCATATCTCCCTGGA
1 CAGCAGTGGAAC-AGATCGAAGATTGTAAGTCATATCTCCCTAAA
* * * *
7282169 CAGCAGTGGAATAGGTTGAAGATTGT-AGATCATGTCTCCCTAAA
1 CAGCAGTGGAACAGATCGAAGATTGTAAG-TCATATCTCCCTAAA
*
7282213 CAGTAGTGGAACAGATCGAAGAT
1 CAGCAGTGGAACAGATCGAAGAT
7282236 GACAAATCTT
Statistics
Matches: 206, Mismatches: 32, Indels: 10
0.83 0.13 0.04
Matches are distributed among these distances:
43 5 0.02
44 198 0.96
45 3 0.01
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (44 bp):
CAGCAGTGGAACAGATCGAAGATTGTAAGTCATATCTCCCTAAA
Found at i:7282235 original size:88 final size:88
Alignment explanation
Indices: 7281936--7282235 Score: 343
Period size: 88 Copynumber: 3.4 Consensus size: 88
7281926 GATACCAATT
* * * * * * * *
7281936 CTATCTCCCTGGGCAGCAGTGGAATAGGTTGAATATTGTAAGTCCTATCTCCTTGGACAACAGTG
1 CTATCTCCCTAGACAGTAGCGGAACAGGTTGAAGATTGTAAGTCCTATCTCCCTGGACAGCAGTG
7282001 GAATAGGTTGAAGATTGTAAGTC
66 GAATAGGTTGAAGATTGTAAGTC
* * * * *
7282024 CTATCTCTCTAGACAGTAGGGGAATAGGTTGAAGATTATAAGCCCTATCTCCCTGGACAGCAGTG
1 CTATCTCCCTAGACAGTAGCGGAACAGGTTGAAGATTGTAAGTCCTATCTCCCTGGACAGCAGTG
* *
7282089 GAATAGGATGAAGATTGTAAGCC
66 GAATAGGTTGAAGATTGTAAGTC
* * * *
7282112 CTATCTCCCTGGACAGCAGCGG-ACTAGGTTAAAGATTGTAAGTCATATCTCCCTGGACAGCAGT
1 CTATCTCCCTAGACAGTAGCGGAAC-AGGTTGAAGATTGTAAGTCCTATCTCCCTGGACAGCAGT
7282176 GGAATAGGTTGAAGATTGT-AGATC
65 GGAATAGGTTGAAGATTGTAAG-TC
* * * * * *
7282200 ATGTCTCCCTAAACAGTAGTGGAACAGATCGAAGAT
1 CTATCTCCCTAGACAGTAGCGGAACAGGTTGAAGAT
7282236 GACAAATCTT
Statistics
Matches: 177, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
87 3 0.02
88 172 0.97
89 2 0.01
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (88 bp):
CTATCTCCCTAGACAGTAGCGGAACAGGTTGAAGATTGTAAGTCCTATCTCCCTGGACAGCAGTG
GAATAGGTTGAAGATTGTAAGTC
Found at i:7282376 original size:50 final size:50
Alignment explanation
Indices: 7282317--7282794 Score: 331
Period size: 50 Copynumber: 9.6 Consensus size: 50
7282307 ATTGCAGTTA
* * **
7282317 AAAATATTAAAGCTACAACAGCGAATCTTATCTCTTAGGCGGTGTAGTGG
1 AAAAGATTAAAGCCACAACAGCGAATCTTATCTCCCAGGCGGTGTAGTGG
* ** * * * * ** *
7282367 AATAGATTAAAGCCACAATGGTGAATCTT-GCTTCCCCGACATTGTAGT-T
1 AAAAGATTAAAGCCACAACAGCGAATCTTATC-TCCCAGGCGGTGTAGTGG
* * *
7282416 AAAAGATTAAAGCTACAACAGCGAATCTTATCTCTCAGGTGGTGTAGTGG
1 AAAAGATTAAAGCCACAACAGCGAATCTTATCTCCCAGGCGGTGTAGTGG
* * * ** * *
7282466 AACAGATTAAAGCCACAACGGCGAATCTT-GCTTCCCCA-GCATTGCAGT-T
1 AAAAGATTAAAGCCACAACAGCGAATCTTATC-T-CCCAGGCGGTGTAGTGG
* * *
7282515 AAAAGATTAAAGCTACAACAGCAAATCTTATCTCTCAGGCGGTGTAGTGG
1 AAAAGATTAAAGCCACAACAGCGAATCTTATCTCCCAGGCGGTGTAGTGG
* * * * * ** * **
7282565 AACAGATTAAAGCCACAACGGCGAATCTT-GCTTCCCCGACATTGCAGTTA
1 AAAAGATTAAAGCCACAACAGCGAATCTTATC-TCCCAGGCGGTGTAGTGG
*
7282615 AAAAGATTAAAGCTACAACAGCGAATCTTATCTCCCAGGCGGTGTAGTGG
1 AAAAGATTAAAGCCACAACAGCGAATCTTATCTCCCAGGCGGTGTAGTGG
* * * * * * ** * **
7282665 AACAGATTAAAGCCATAACGGCGAATCTTGTTTTCCC-GACATTGCAGTTA
1 AAAAGATTAAAGCCACAACAGCGAATCTT-ATCTCCCAGGCGGTGTAGTGG
* ** * * * *
7282715 AAAAGATTAAAGCTACAACAGTAAATCTTATCTCTCACGCGGTGCAATGG
1 AAAAGATTAAAGCCACAACAGCGAATCTTATCTCCCAGGCGGTGTAGTGG
* * *
7282765 AACAGATTGAAGCCACAACGGCGAATCTTA
1 AAAAGATTAAAGCCACAACAGCGAATCTTA
7282795 CTTCCCCGAC
Statistics
Matches: 311, Mismatches: 105, Indels: 24
0.71 0.24 0.05
Matches are distributed among these distances:
48 3 0.01
49 74 0.24
50 225 0.72
51 9 0.03
ACGTcount: A:0.34, C:0.21, G:0.20, T:0.25
Consensus pattern (50 bp):
AAAAGATTAAAGCCACAACAGCGAATCTTATCTCCCAGGCGGTGTAGTGG
Found at i:7282826 original size:100 final size:100
Alignment explanation
Indices: 7282262--7282806 Score: 844
Period size: 100 Copynumber: 5.5 Consensus size: 100
7282252 CTGGCAATGC
* * * * * *
7282262 AGTGGAACAGATTGAAGCTACAACGGTGAATTTTGCTTCCCTGACATTGCAGTTAAAAATATTAA
1 AGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
*
7282327 AGCTACAACAGCGAATCTTATCTCTTAGGCGGTGT
66 AGCTACAACAGCGAATCTTATCTCTCAGGCGGTGT
* * * *
7282362 AGTGGAATAGATTAAAGCCACAATGGTGAATCTTGCTTCCCCGACATTGTAGTT-AAAAGATTAA
1 AGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
*
7282426 AGCTACAACAGCGAATCTTATCTCTCAGGTGGTGT
66 AGCTACAACAGCGAATCTTATCTCTCAGGCGGTGT
7282461 AGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCC-AGCATTGCAGTT-AAAAGATTA
1 AGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGA-CATTGCAGTTAAAAAGATTA
*
7282524 AAGCTACAACAGCAAATCTTATCTCTCAGGCGGTGT
65 AAGCTACAACAGCGAATCTTATCTCTCAGGCGGTGT
7282560 AGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
1 AGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
*
7282625 AGCTACAACAGCGAATCTTATCTCCCAGGCGGTGT
66 AGCTACAACAGCGAATCTTATCTCTCAGGCGGTGT
* * *
7282660 AGTGGAACAGATTAAAGCCATAACGGCGAATCTTGTTTTCCCGACATTGCAGTTAAAAAGATTAA
1 AGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
** * *
7282725 AGCTACAACAGTAAATCTTATCTCTCACGCGGTGC
66 AGCTACAACAGCGAATCTTATCTCTCAGGCGGTGT
* * *
7282760 AATGGAACAGATTGAAGCCACAACGGCGAATCTTACTTCCCCGACAT
1 AGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACAT
7282807 CACAGTGAAG
Statistics
Matches: 410, Mismatches: 32, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
98 1 0.00
99 185 0.45
100 224 0.55
ACGTcount: A:0.33, C:0.21, G:0.20, T:0.25
Consensus pattern (100 bp):
AGTGGAACAGATTAAAGCCACAACGGCGAATCTTGCTTCCCCGACATTGCAGTTAAAAAGATTAA
AGCTACAACAGCGAATCTTATCTCTCAGGCGGTGT
Found at i:7287061 original size:13 final size:13
Alignment explanation
Indices: 7287043--7287068 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7287033 GATAATCTTC
7287043 AAAATAAATAAAT
1 AAAATAAATAAAT
7287056 AAAATAAATAAAT
1 AAAATAAATAAAT
7287069 TTAATTTAAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (13 bp):
AAAATAAATAAAT
Found at i:7289962 original size:30 final size:30
Alignment explanation
Indices: 7289926--7289988 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
7289916 CCACGATCAT
7289926 TTTAAAATGTGAAATTTAACAAGTTTAAAG
1 TTTAAAATGTGAAATTTAACAAGTTTAAAG
7289956 TTTAAAATGTGAAATTTAACAAGTTTAAAG
1 TTTAAAATGTGAAATTTAACAAGTTTAAAG
7289986 TTT
1 TTT
7289989 GCATTAAAAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.44, C:0.03, G:0.13, T:0.40
Consensus pattern (30 bp):
TTTAAAATGTGAAATTTAACAAGTTTAAAG
Found at i:7299415 original size:81 final size:81
Alignment explanation
Indices: 7299280--7299447 Score: 327
Period size: 81 Copynumber: 2.1 Consensus size: 81
7299270 ATCTTGGCAA
7299280 ATTGAGTTAATTCTTAGGTATAGAGGCATCTTATACTTCTACTAGTTTGTTTCTTTCTCAAAGGA
1 ATTGAGTTAATTCTTAGGTATAGAGGCATCTTATACTTCTACTAGTTTGTTTCTTTCTCAAAGGA
*
7299345 ATTACATAGATGATTT
66 AATACATAGATGATTT
7299361 ATTGAGTTAATTCTTAGGTATAGAGGCATCTTATACTTCTACTAGTTTGTTTCTTTCTCAAAGGA
1 ATTGAGTTAATTCTTAGGTATAGAGGCATCTTATACTTCTACTAGTTTGTTTCTTTCTCAAAGGA
7299426 AATACATAGATGATTT
66 AATACATAGATGATTT
7299442 ATTGAG
1 ATTGAG
7299448 GAAGGCTCAT
Statistics
Matches: 86, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
81 86 1.00
ACGTcount: A:0.29, C:0.12, G:0.17, T:0.42
Consensus pattern (81 bp):
ATTGAGTTAATTCTTAGGTATAGAGGCATCTTATACTTCTACTAGTTTGTTTCTTTCTCAAAGGA
AATACATAGATGATTT
Found at i:7303316 original size:21 final size:21
Alignment explanation
Indices: 7303290--7303339 Score: 91
Period size: 21 Copynumber: 2.4 Consensus size: 21
7303280 TGCCTCATCA
7303290 TAAGTTTTTGAAAATTTACTT
1 TAAGTTTTTGAAAATTTACTT
7303311 TAAGTTTTTGAAAATTTACTT
1 TAAGTTTTTGAAAATTTACTT
*
7303332 TAAATTTT
1 TAAGTTTT
7303340 ACATGTCTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.34, C:0.04, G:0.08, T:0.54
Consensus pattern (21 bp):
TAAGTTTTTGAAAATTTACTT
Found at i:7313593 original size:15 final size:16
Alignment explanation
Indices: 7313570--7313600 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7313560 TTTAGTATTA
7313570 TATATATTTAAAAATT
1 TATATATTTAAAAATT
7313586 TATA-ATTTAAAAATT
1 TATATATTTAAAAATT
7313601 GCATCTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 11 0.73
16 4 0.27
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (16 bp):
TATATATTTAAAAATT
Found at i:7317859 original size:14 final size:14
Alignment explanation
Indices: 7317842--7317903 Score: 52
Period size: 14 Copynumber: 4.1 Consensus size: 14
7317832 TTAAGGGTTG
7317842 AGGTTTAAGATTTA
1 AGGTTTAAGATTTA
*
7317856 AGGTTTATAGTTTATA
1 AGGTTTA-AGATT-TA
* *
7317872 TATGTTTTATGATTTA
1 -A-GGTTTAAGATTTA
*
7317888 AGGTTTAGGATTTA
1 AGGTTTAAGATTTA
7317902 AG
1 AG
7317904 CAGGTTTATA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
14 20 0.53
15 5 0.13
16 4 0.11
17 4 0.11
18 5 0.13
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (14 bp):
AGGTTTAAGATTTA
Found at i:7318233 original size:21 final size:20
Alignment explanation
Indices: 7318208--7318255 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
7318198 TCTAAGTCAA
*
7318208 TTTAGGATCAAGGGTTAAAGG
1 TTTAGG-TCAAGGGTTAAAAG
**
7318229 TTTAGTGTTTAGGGTTAAAAG
1 TTTAG-GTCAAGGGTTAAAAG
7318250 TTTAGG
1 TTTAGG
7318256 GTTATATCCT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 21 0.91
22 1 0.04
ACGTcount: A:0.29, C:0.02, G:0.31, T:0.38
Consensus pattern (20 bp):
TTTAGGTCAAGGGTTAAAAG
Found at i:7318339 original size:21 final size:21
Alignment explanation
Indices: 7318313--7318362 Score: 84
Period size: 20 Copynumber: 2.4 Consensus size: 21
7318303 TACGATTTAG
7318313 GGTTTAGGGGATAAGGGTTGT
1 GGTTTAGGGGATAAGGGTTGT
7318334 GGTTTA-GGGATAAGGGTTGT
1 GGTTTAGGGGATAAGGGTTGT
*
7318354 AGTTTAGGG
1 GGTTTAGGG
7318363 TCTAGGTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 19 0.70
21 8 0.30
ACGTcount: A:0.20, C:0.00, G:0.46, T:0.34
Consensus pattern (21 bp):
GGTTTAGGGGATAAGGGTTGT
Found at i:7319871 original size:22 final size:22
Alignment explanation
Indices: 7319844--7319890 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
7319834 GTCTTTCTAC
7319844 TTAGGTTTAATCAGTATAAAAT
1 TTAGGTTTAATCAGTATAAAAT
7319866 TTAGGTTTAATCAGTATAAAAT
1 TTAGGTTTAATCAGTATAAAAT
7319888 TTA
1 TTA
7319891 AGAAAATTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.40, C:0.04, G:0.13, T:0.43
Consensus pattern (22 bp):
TTAGGTTTAATCAGTATAAAAT
Found at i:7321116 original size:18 final size:18
Alignment explanation
Indices: 7321093--7321137 Score: 81
Period size: 18 Copynumber: 2.5 Consensus size: 18
7321083 AAGCAATTTT
7321093 TAAATTATATAACTTACA
1 TAAATTATATAACTTACA
7321111 TAAATTATATAACTTACA
1 TAAATTATATAACTTACA
*
7321129 TAACTTATA
1 TAAATTATA
7321138 AATATTTATA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (18 bp):
TAAATTATATAACTTACA
Found at i:7321122 original size:9 final size:9
Alignment explanation
Indices: 7321097--7321137 Score: 55
Period size: 9 Copynumber: 4.6 Consensus size: 9
7321087 AATTTTTAAA
7321097 TTATATAAC
1 TTATATAAC
* *
7321106 TTACATAAA
1 TTATATAAC
7321115 TTATATAAC
1 TTATATAAC
*
7321124 TTACATAAC
1 TTATATAAC
7321133 TTATA
1 TTATA
7321138 AATATTTATA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.41
Consensus pattern (9 bp):
TTATATAAC
Found at i:7321179 original size:17 final size:18
Alignment explanation
Indices: 7321159--7321192 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7321149 ACATTTTTAA
7321159 TATATATTTTT-AAAATC
1 TATATATTTTTCAAAATC
*
7321176 TATATTTTTTTCAAAAT
1 TATATATTTTTCAAAAT
7321193 TTATCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
TATATATTTTTCAAAATC
Found at i:7321262 original size:46 final size:46
Alignment explanation
Indices: 7321209--7321351 Score: 176
Period size: 46 Copynumber: 3.2 Consensus size: 46
7321199 ATCATAGCTT
7321209 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATA
1 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATA
* * * *
7321255 AACTTACATAA-TACATATCTTA--AAT-A-A-AAT-AC-AATACATA
1 AACTTACATAACT-CAAAT-TTATCAATCATATCATAACTTATATATA
7321295 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATA
1 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATA
7321341 AACTTACATAA
1 AACTTACATAA
7321352 TACATATCTT
Statistics
Matches: 79, Mismatches: 8, Indels: 20
0.74 0.07 0.19
Matches are distributed among these distances:
39 3 0.04
40 21 0.27
41 6 0.08
42 3 0.04
43 2 0.03
44 3 0.04
45 6 0.08
46 32 0.41
47 3 0.04
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (46 bp):
AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATA
Found at i:7321309 original size:86 final size:86
Alignment explanation
Indices: 7321209--7321390 Score: 355
Period size: 86 Copynumber: 2.1 Consensus size: 86
7321199 ATCATAGCTT
7321209 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATAAACTTACATAATACATATC
1 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATAAACTTACATAATACATATC
7321274 TTAAATAAAATACAATACATA
66 TTAAATAAAATACAATACATA
7321295 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATAAACTTACATAATACATATC
1 AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATAAACTTACATAATACATATC
*
7321360 TTAAATAACATACAATACATA
66 TTAAATAAAATACAATACATA
7321381 AACTTACATA
1 AACTTACATA
7321391 TAAACTTGCA
Statistics
Matches: 95, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
86 95 1.00
ACGTcount: A:0.49, C:0.17, G:0.00, T:0.34
Consensus pattern (86 bp):
AACTTACATAACTCAAATTTATCAATCATATCATAACTTATATATAAACTTACATAATACATATC
TTAAATAAAATACAATACATA
Found at i:7321382 original size:40 final size:40
Alignment explanation
Indices: 7321252--7321390 Score: 156
Period size: 40 Copynumber: 3.3 Consensus size: 40
7321242 TAACTTATAT
*
7321252 ATAAACTTACATAATACATATCTTAAATAAAATACAATAC
1 ATAAACTTACATAATACATATCTTAAATAACATACAATAC
* * *
7321292 ATAAACTTACATAACT-CAAAT-TTATCAATCATATCATAACTTATAT
1 ATAAACTTACATAA-TACATATCTTA--AAT-A-A-CAT-AC-AATAC
7321338 ATAAACTTACATAATACATATCTTAAATAACATACAATAC
1 ATAAACTTACATAATACATATCTTAAATAACATACAATAC
7321378 ATAAACTTACATA
1 ATAAACTTACATA
7321391 TAAACTTGCA
Statistics
Matches: 82, Mismatches: 7, Indels: 20
0.75 0.06 0.18
Matches are distributed among these distances:
39 3 0.04
40 34 0.41
41 6 0.07
42 4 0.05
43 2 0.02
44 3 0.04
45 6 0.07
46 21 0.26
47 3 0.04
ACGTcount: A:0.51, C:0.17, G:0.00, T:0.32
Consensus pattern (40 bp):
ATAAACTTACATAATACATATCTTAAATAACATACAATAC
Found at i:7321449 original size:9 final size:9
Alignment explanation
Indices: 7321419--7322083 Score: 559
Period size: 9 Copynumber: 72.2 Consensus size: 9
7321409 TTTAAATTAT
7321419 ATAACTTAC
1 ATAACTTAC
* *
7321428 ATAAATTAT
1 ATAACTTAC
7321437 ATAACTTAC
1 ATAACTTAC
7321446 ATAACTTAC
1 ATAACTTAC
*
7321455 ATACCTTAC
1 ATAACTTAC
* *
7321464 ATAAATTAA
1 ATAACTTAC
7321473 ATAACTTAC
1 ATAACTTAC
*
7321482 ATAACTTAA
1 ATAACTTAC
7321491 ATAACTTAC
1 ATAACTTAC
7321500 ATAA--TAC
1 ATAACTTAC
*
7321507 ATAACCTAC
1 ATAACTTAC
*
7321516 CTAACTTAC
1 ATAACTTAC
7321525 ATAACTTAC
1 ATAACTTAC
*
7321534 ATAACTTAA
1 ATAACTTAC
7321543 ATAACTTAC
1 ATAACTTAC
7321552 ATAA--TAC
1 ATAACTTAC
*
7321559 ATAACCTAC
1 ATAACTTAC
* *
7321568 CTAACTTAA
1 ATAACTTAC
* *
7321577 ATTATTTAC
1 ATAACTTAC
7321586 ATAA--TAC
1 ATAACTTAC
7321593 ATAACTTAGTAC
1 ATAAC-T--TAC
*
7321605 ATAATTTAC
1 ATAACTTAC
7321614 ATAA--TAC
1 ATAACTTAC
7321621 ATAACTTATAC
1 ATAAC-T-TAC
7321632 ATAACTTAC
1 ATAACTTAC
** *
7321641 ATATTTTTTTC
1 ATA--ACTTAC
7321652 -TAAATTGCTTAC
1 AT-AA---CTTAC
* *
7321664 ATAAATTAT
1 ATAACTTAC
*
7321673 ATAACTTAG
1 ATAACTTAC
7321682 ATAACTTAC
1 ATAACTTAC
* *
7321691 ATAAATTAA
1 ATAACTTAC
7321700 ATAACTTAC
1 ATAACTTAC
7321709 ATAACTTAC
1 ATAACTTAC
*
7321718 ATAACTTAA
1 ATAACTTAC
*
7321727 ATAACTTAT
1 ATAACTTAC
*
7321736 ATAATTTAC
1 ATAACTTAC
*
7321745 ATAAATTAC
1 ATAACTTAC
7321754 ATAACTTAC
1 ATAACTTAC
7321763 ATAACTTATAC
1 ATAAC-T-TAC
7321774 ATAACTTATAC
1 ATAAC-T-TAC
*
7321785 ATAACTTAA
1 ATAACTTAC
*
7321794 ATAACTTAT
1 ATAACTTAC
*
7321803 ATAATTTAC
1 ATAACTTAC
*
7321812 ATAAATTAC
1 ATAACTTAC
7321821 ATAACTTAC
1 ATAACTTAC
7321830 ATAACTTATAC
1 ATAAC-T-TAC
7321841 ATAACTTATAC
1 ATAAC-T-TAC
7321852 ATAACTTATAC
1 ATAAC-T-TAC
7321863 ATAACTTAC
1 ATAACTTAC
*
7321872 ATAATTTAC
1 ATAACTTAC
7321881 ATAA--TAC
1 ATAACTTAC
7321888 ATAACTTATAC
1 ATAAC-T-TAC
7321899 ATAACTTAC
1 ATAACTTAC
** *
7321908 ATATTTTTTTC
1 ATA--ACTTAC
*
7321919 -TAAATTGCTAAC
1 AT-AA---CTTAC
* *
7321931 ATAAATTAT
1 ATAACTTAC
7321940 ATAACTTAC
1 ATAACTTAC
7321949 ATAACTTAC
1 ATAACTTAC
* *
7321958 ATAAATTAA
1 ATAACTTAC
7321967 ATAACTTAC
1 ATAACTTAC
7321976 ATAACTTAC
1 ATAACTTAC
7321985 ATAACTTAC
1 ATAACTTAC
* *
7321994 ATAGCTTAA
1 ATAACTTAC
7322003 ATAACTTAC
1 ATAACTTAC
7322012 ATAACTTAC
1 ATAACTTAC
*
7322021 ATAAATTAC
1 ATAACTTAC
7322030 ATAACTTAC
1 ATAACTTAC
7322039 ATAACTTAC
1 ATAACTTAC
7322048 ATAACTTAC
1 ATAACTTAC
7322057 ATAA--TAC
1 ATAACTTAC
7322064 ATAACCTT-C
1 ATAA-CTTAC
*
7322073 CTAACTTAC
1 ATAACTTAC
7322082 AT
1 AT
7322084 TATTGTCTAA
Statistics
Matches: 539, Mismatches: 78, Indels: 78
0.78 0.11 0.11
Matches are distributed among these distances:
7 42 0.08
8 3 0.01
9 393 0.73
10 9 0.02
11 74 0.14
12 16 0.03
13 2 0.00
ACGTcount: A:0.46, C:0.17, G:0.01, T:0.36
Consensus pattern (9 bp):
ATAACTTAC
Found at i:7326203 original size:21 final size:21
Alignment explanation
Indices: 7326177--7326224 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
7326167 CAACAACTTA
* *
7326177 AAGCAGAGGCGGCAGCGAGGG
1 AAGCAGAGGCCGCAGCGAGAG
*
7326198 AAGCAGATGCCGCAGCGAGAG
1 AAGCAGAGGCCGCAGCGAGAG
7326219 AAGCAG
1 AAGCAG
7326225 CGATAGCAGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.33, C:0.21, G:0.44, T:0.02
Consensus pattern (21 bp):
AAGCAGAGGCCGCAGCGAGAG
Found at i:7326691 original size:43 final size:41
Alignment explanation
Indices: 7326644--7326779 Score: 143
Period size: 43 Copynumber: 3.2 Consensus size: 41
7326634 ACCAAACAGT
7326644 GGCGTTTGTGAAACAAGCGCCGCTAAAGAACACTACTTTTAGC
1 GGCGTTT-TGAAACAAGCGCCGCTAAAGAACA-TACTTTTAGC
*
7326687 GGCGTTTTTG-AACAAGCGCCGCTAAAGAACATTACTTTTAGA
1 GGCG-TTTTGAAACAAGCGCCGCTAAAGAACA-TACTTTTAGC
* **
7326729 GGCATTTT-ATTCCAAAGCGCCGCTAAAGAACATGA-TCTTTAGC
1 GGCGTTTTGA-AAC-AAGCGCCGCTAAAGAACAT-ACT-TTTAGC
7326772 GGCGTTTT
1 GGCGTTTT
7326780 TTTCCTAAGC
Statistics
Matches: 80, Mismatches: 7, Indels: 12
0.81 0.07 0.12
Matches are distributed among these distances:
41 4 0.05
42 36 0.45
43 37 0.46
44 3 0.04
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.28
Consensus pattern (41 bp):
GGCGTTTTGAAACAAGCGCCGCTAAAGAACATACTTTTAGC
Found at i:7326747 original size:85 final size:83
Alignment explanation
Indices: 7326658--7326994 Score: 374
Period size: 85 Copynumber: 4.0 Consensus size: 83
7326648 TTTGTGAAAC
** *
7326658 AAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCGTTTTTGAAC-AAGCGCCGCTAAAGAACATT
1 AAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTT-TCCTAAGCGCCGCTAAAGAACATG
* * *
7326720 ACTTTTAGAGGCATTTTATTCCA
63 A-TTTTAGCGGCATTTT-TTTCT
* * *
7326743 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCTAAGCGCCGTTATAGAAGATGAG
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTCCTAAGCGCCGCTAAAGAACATGA-
* * *
7326808 ATTTCGCGGCGTTTTTTTCT
64 TTTTAGCGGCATTTTTTTCT
* *
7326828 AAGCGCCGCTAAAAAACATGTTCTTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGATC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGAT-
7326893 TTTAGCGGCATTTTTTTCT
65 TTTAGCGGCATTTTTTTCT
* * * * **
7326912 AAGCGCCGCTACAGAACATGATCTTTAGCGGCGTTTATTTCTTTAGCGCCGCTAAAGAATATTTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTCCTAAGCGCCGCTAAAGAACATGAT
*
7326977 CTTTAGCGGTATTTTTTT
65 -TTTAGCGGCATTTTTTT
7326995 GTGTAAGCAC
Statistics
Matches: 216, Mismatches: 30, Indels: 12
0.84 0.12 0.05
Matches are distributed among these distances:
84 78 0.36
85 104 0.48
86 34 0.16
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (83 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCTAAGCGCCGCTAAAGAACATGATT
TTAGCGGCATTTTTTTCT
Found at i:7326790 original size:43 final size:43
Alignment explanation
Indices: 7326658--7326994 Score: 364
Period size: 42 Copynumber: 7.9 Consensus size: 43
7326648 TTTGTGAAAC
***
7326658 AAGCGCCGCTAAAGAACACT-A-CTTTTAGCGGCGTTTTTGAAC-
1 AAGCGCCGCTAAAGAACA-TGATC-TTTAGCGGCGTTTTTTTCCT
* * * * *
7326700 AAGCGCCGCTAAAGAACATTA-CTTTTAGAGGCATTTTATTCCA
1 AAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTTTTTCCT
7326743 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCT
* * * ** *
7326786 AAGCGCCGTTATAGAAGATGAGATTTCGCGGCGTTTTTTT-CT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCT
* *
7326828 AAGCGCCGCTAAAAAACATGTTCTTTAGCGGCG-TTTTTTCCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCT
*
7326870 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTT-CT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCT
* * *
7326912 AAGCGCCGCTACAGAACATGATCTTTAGCGGCGTTTATTTCTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCT
* * ** **
7326955 TAGCGCCGCTAAAGAATATTTTCTTTAGCGGTATTTTTTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTT
7326995 GTGTAAGCAC
Statistics
Matches: 249, Mismatches: 40, Indels: 11
0.83 0.13 0.04
Matches are distributed among these distances:
41 7 0.03
42 132 0.53
43 109 0.44
44 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.20, T:0.34
Consensus pattern (43 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCCT
Found at i:7328412 original size:14 final size:15
Alignment explanation
Indices: 7328379--7328414 Score: 51
Period size: 14 Copynumber: 2.6 Consensus size: 15
7328369 AAGTAACATC
7328379 TTTTA-TAAGATACA
1 TTTTACTAAGATACA
7328393 -TTTACTAA-ATACA
1 TTTTACTAAGATACA
7328406 TTTTACTAA
1 TTTTACTAA
7328415 TTGTATTTAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
13 9 0.45
14 11 0.55
ACGTcount: A:0.42, C:0.11, G:0.03, T:0.44
Consensus pattern (15 bp):
TTTTACTAAGATACA
Found at i:7331807 original size:22 final size:22
Alignment explanation
Indices: 7331777--7331819 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7331767 ACACCAAAAC
*
7331777 AGGCTTTTAGCAGCGCTTTTTT
1 AGGCCTTTAGCAGCGCTTTTTT
* *
7331799 AGGCCTTTAGCGGTGCTTTTT
1 AGGCCTTTAGCAGCGCTTTTT
7331820 AGCGCCGCAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.12, C:0.19, G:0.26, T:0.44
Consensus pattern (22 bp):
AGGCCTTTAGCAGCGCTTTTTT
Found at i:7332024 original size:42 final size:43
Alignment explanation
Indices: 7331978--7332076 Score: 128
Period size: 43 Copynumber: 2.3 Consensus size: 43
7331968 AGACTAAGAC
*
7331978 CTTTAGCGGCGCTTCCACTA-AAGCGCCGCTAAAGATCAGGGT
1 CTTTAGCGGCGCTTCCACGAGAAGCGCCGCTAAAGATCAGGGT
* *** *
7332020 CTTTAGCGGCGTTTTTGCGAGAAGCGCCGCTAAAGATTAGGGT
1 CTTTAGCGGCGCTTCCACGAGAAGCGCCGCTAAAGATCAGGGT
*
7332063 CTTTAGCAGCGCTT
1 CTTTAGCGGCGCTT
7332077 TTTCCACAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
42 15 0.31
43 33 0.69
ACGTcount: A:0.21, C:0.24, G:0.28, T:0.26
Consensus pattern (43 bp):
CTTTAGCGGCGCTTCCACGAGAAGCGCCGCTAAAGATCAGGGT
Found at i:7332091 original size:43 final size:42
Alignment explanation
Indices: 7331990--7332098 Score: 128
Period size: 43 Copynumber: 2.5 Consensus size: 42
7331980 TTAGCGGCGC
*
7331990 TTCCACTAAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTT
1 TTCCAC-AAA-CGCCGCTAAAGATCAGGGTCTTTAGCAGCGTTT
* * * *
7332034 TTGCGAGAAGCGCCGCTAAAGATTAGGGTCTTTAGCAGCGCTTT
1 TT-CCACAAACGCCGCTAAAGATCAGGGTCTTTAGCAGCG-TTT
*
7332078 TTCCACAAACGCCGCAAAAGA
1 TTCCACAAACGCCGCTAAAGA
7332099 CCCTGATCTG
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
43 43 0.80
44 9 0.17
45 2 0.04
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.24
Consensus pattern (42 bp):
TTCCACAAACGCCGCTAAAGATCAGGGTCTTTAGCAGCGTTT
Found at i:7332141 original size:43 final size:42
Alignment explanation
Indices: 7332065--7332183 Score: 107
Period size: 43 Copynumber: 2.8 Consensus size: 42
7332055 ATTAGGGTCT
* * * * * **
7332065 TTAGCAGCGCTTTTTCCACAAACGCCGCAAAAGACCCTGATCTG
1 TTAGCGGCGC-TTTCCCACAAACGCCACTAAAGAACCAAAT-TG
*
7332109 TT-GCGGCGC-TTCGACCACAAACGCCACTAAAGAACCAAATTT
1 TTAGCGGCGCTTTC--CCACAAACGCCACTAAAGAACCAAATTG
7332151 TTAGCGGCGCTTTCCCTACAAACGCCACTAAAG
1 TTAGCGGCGCTTTCCC-ACAAACGCCACTAAAG
7332184 GTGTTGGCCT
Statistics
Matches: 62, Mismatches: 8, Indels: 11
0.77 0.10 0.14
Matches are distributed among these distances:
41 2 0.03
42 5 0.08
43 50 0.81
44 5 0.08
ACGTcount: A:0.29, C:0.32, G:0.18, T:0.21
Consensus pattern (42 bp):
TTAGCGGCGCTTTCCCACAAACGCCACTAAAGAACCAAATTG
Found at i:7332301 original size:43 final size:43
Alignment explanation
Indices: 7332191--7332311 Score: 116
Period size: 43 Copynumber: 2.8 Consensus size: 43
7332181 AAGGTGTTGG
* * ***
7332191 CCTTTAGTGGCGTTTTTTCCACAAACGCCGCTAAAGACCCTTA
1 CCTTTAGTGGCGTTTTTTTCAAAAACGCCGCTAAAGACCAACA
* * * * * *
7332234 TCTTTAGCGGTGCTTTTATCAAAAACGCCGCTAAAGGCCAACA
1 CCTTTAGTGGCGTTTTTTTCAAAAACGCCGCTAAAGACCAACA
* * *
7332277 CCTTTAGTGGCGTTTTTTTAAAAAATGCCACTAAA
1 CCTTTAGTGGCGTTTTTTTCAAAAACGCCGCTAAA
7332312 TTTGGCAGAT
Statistics
Matches: 59, Mismatches: 19, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.31
Consensus pattern (43 bp):
CCTTTAGTGGCGTTTTTTTCAAAAACGCCGCTAAAGACCAACA
Found at i:7332647 original size:21 final size:21
Alignment explanation
Indices: 7332618--7332730 Score: 109
Period size: 21 Copynumber: 5.4 Consensus size: 21
7332608 TTTGACGCTG
*
7332618 CTCTGCTTCCCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* **
7332639 CTCTACTTCCCTCGCTATAGC
1 CTCTGCTTCCCTCGCTGCAGC
*
7332660 CTCTGCTTCCCTCGCTGTAGC
1 CTCTGCTTCCCTCGCTGCAGC
* * * *
7332681 CTATACTTCTCTCGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
* * *
7332702 CTCTGCTTCTCTTGCTGCCGC
1 CTCTGCTTCCCTCGCTGCAGC
*
7332723 ATCTGCTT
1 CTCTGCTT
7332731 TAAGCTGCTG
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 77 1.00
ACGTcount: A:0.07, C:0.42, G:0.16, T:0.35
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:7332665 original size:42 final size:42
Alignment explanation
Indices: 7332618--7332719 Score: 132
Period size: 42 Copynumber: 2.4 Consensus size: 42
7332608 TTTGACGCTG
* *
7332618 CTCTGCTTCCCTTGCTGCAGCCTCTACTTCCCTCGCTATAGC
1 CTCTGCTTCCCTTGCTGCAGCCTATACTTCCCTCGCTACAGC
* * * * *
7332660 CTCTGCTTCCCTCGCTGTAGCCTATACTTCTCTCGCTGCCGC
1 CTCTGCTTCCCTTGCTGCAGCCTATACTTCCCTCGCTACAGC
*
7332702 CTCTGCTTCTCTTGCTGC
1 CTCTGCTTCCCTTGCTGC
7332720 CGCATCTGCT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
42 50 1.00
ACGTcount: A:0.07, C:0.42, G:0.16, T:0.35
Consensus pattern (42 bp):
CTCTGCTTCCCTTGCTGCAGCCTATACTTCCCTCGCTACAGC
Found at i:7332791 original size:66 final size:66
Alignment explanation
Indices: 7332701--7332867 Score: 203
Period size: 66 Copynumber: 2.5 Consensus size: 66
7332691 CTCGCTGCCG
* * * *
7332701 CCTCTGCTTCTCTTGCTGCCGCATCTGCTTTAAGCTGCT-GCTGGAGTTCTTCATA-CTTTCGTT
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAG-TGCTAGCTAGAGTTCTTCATATCTTT-GTT
7332764 GAA
64 GAA
** *
7332767 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTTTTAGCTAGAGTTCTTCATATCTTTTTTGA
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTGCTAGCTAGAGTTCTTCATATCTTTGTTGA
7332832 A
66 A
* * * *
7332833 CCTCAGCTTCTCTCGATGTTGCCTCCGCTTTAAGT
1 CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGT
7332868 TGTGTAATTT
Statistics
Matches: 88, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
65 2 0.02
66 82 0.93
67 4 0.05
ACGTcount: A:0.14, C:0.28, G:0.17, T:0.41
Consensus pattern (66 bp):
CCTCAGCTTCTCTCGCTGCTGCATCTGCTTTAAGTGCTAGCTAGAGTTCTTCATATCTTTGTTGA
A
Found at i:7338307 original size:9 final size:9
Alignment explanation
Indices: 7338258--7338588 Score: 217
Period size: 9 Copynumber: 38.8 Consensus size: 9
7338248 AATTGCACGG
7338258 GTAAGTTAT
1 GTAAGTTAT
7338267 GT-A-TTAT
1 GTAAGTTAT
*
7338274 GTAAGCTAT
1 GTAAGTTAT
*
7338283 GTAAGTTGT
1 GTAAGTTAT
7338292 GT-A-TTAT
1 GTAAGTTAT
7338299 GTAAGTTAT
1 GTAAGTTAT
7338308 -T-A-TTAT
1 GTAAGTTAT
7338314 GTAAGTTAT
1 GTAAGTTAT
*
7338323 GTAAGTAAT
1 GTAAGTTAT
7338332 GT-A-TTAT
1 GTAAGTTAT
*
7338339 GTAAGTTGT
1 GTAAGTTAT
*
7338348 GT-A-TGAT
1 GTAAGTTAT
*
7338355 GTTAGTTAT
1 GTAAGTTAT
**
7338364 CAAAGTTAT
1 GTAAGTTAT
7338373 GT-A-TTAT
1 GTAAGTTAT
7338380 GTAAGTTAT
1 GTAAGTTAT
*
7338389 TTAAGTTAT
1 GTAAGTTAT
*
7338398 GTAAGTTGT
1 GTAAGTTAT
7338407 GT-A-TTAT
1 GTAAGTTAT
7338414 GTAAGTTAT
1 GTAAGTTAT
* *
7338423 GTAGGCTAT
1 GTAAGTTAT
* *
7338432 GTATGTTAA
1 GTAAGTTAT
7338441 GTAATGTATTAT
1 GTAA-G--TTAT
*
7338453 GTAAGTTGT
1 GTAAGTTAT
*
7338462 GT-A-TAAT
1 GTAAGTTAT
*
7338469 GTTAGTTAT
1 GTAAGTTAT
**
7338478 CAAAGTTAT
1 GTAAGTTAT
7338487 GT-A-TTAT
1 GTAAGTTAT
7338494 GTAAGTTAT
1 GTAAGTTAT
*
7338503 TTAAGTTAT
1 GTAAGTTAT
*
7338512 GTAAGTTGT
1 GTAAGTTAT
7338521 GT-A-TTAT
1 GTAAGTTAT
7338528 GTAAGTTAT
1 GTAAGTTAT
7338537 GT-AGTCTAT
1 GTAAGT-TAT
7338546 GT-A-TTAT
1 GTAAGTTAT
7338553 GTAAGTTAT
1 GTAAGTTAT
*
7338562 -TATGTTATTAT
1 GTAAG---TTAT
7338573 GTAAGTTAT
1 GTAAGTTAT
*
7338582 GCAAGTT
1 GTAAGTT
7338589 TATATATAAG
Statistics
Matches: 249, Mismatches: 42, Indels: 62
0.71 0.12 0.18
Matches are distributed among these distances:
6 4 0.02
7 53 0.21
8 28 0.11
9 148 0.59
10 1 0.00
11 5 0.02
12 10 0.04
ACGTcount: A:0.31, C:0.02, G:0.21, T:0.47
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:7338342 original size:25 final size:25
Alignment explanation
Indices: 7338264--7338588 Score: 143
Period size: 25 Copynumber: 13.0 Consensus size: 25
7338254 ACGGGTAAGT
*
7338264 TATGTATTATGTAAGCTATGTAAGT
1 TATGTATTATGTAAGTTATGTAAGT
*
7338289 TGTGTATTATGTAAGTTAT-T-A-T
1 TATGTATTATGTAAGTTATGTAAGT
*
7338311 TATGTAAGTTATGTAAGTAATGT-A-T
1 TATGT-A-TTATGTAAGTTATGTAAGT
* * *
7338336 TATGTAAGTTGTGT-A-TGATGTTAGT
1 TATGT-A-TTATGTAAGTTATGTAAGT
**
7338361 TATCAAAGTTATGT-A-TTATGTAAGT
1 TAT-GTA-TTATGTAAGTTATGTAAGT
* *
7338386 TATTTAAGTTATGTAAGTTGTGT-A-T
1 TATGT-A-TTATGTAAGTTATGTAAGT
*
7338411 TATGTAAGTTATGTAGGCTATGTATGTTAAGT
1 TATGT-A-TTATGTAAG---T-TATG-TAAGT
* *
7338443 AATGTATTATGTAAGTTGTGT-A-T
1 TATGTATTATGTAAGTTATGTAAGT
* **
7338466 AATGTTAGTTATCAAAGTTATGT-A-T
1 TATG-TA-TTATGTAAGTTATGTAAGT
*
7338491 TATGTAAGTTATTTAAGTTATGTAAGT
1 TATGT-A-TTATGTAAGTTATGTAAGT
*
7338518 TGTGTATTATGTAAGTTATGT-AGT
1 TATGTATTATGTAAGTTATGTAAGT
7338542 CTATGTATTATGTAAGTTAT-T-A--
1 -TATGTATTATGTAAGTTATGTAAGT
* *
7338564 TGT-TATTATGTAAGTTATGCAAGT
1 TATGTATTATGTAAGTTATGTAAGT
7338588 T
1 T
7338589 TATATATAAG
Statistics
Matches: 243, Mismatches: 31, Indels: 53
0.74 0.09 0.16
Matches are distributed among these distances:
20 15 0.06
21 2 0.01
22 6 0.02
23 12 0.05
24 25 0.10
25 145 0.60
26 7 0.03
27 11 0.05
28 1 0.00
29 3 0.01
30 9 0.04
31 2 0.01
32 5 0.02
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.47
Consensus pattern (25 bp):
TATGTATTATGTAAGTTATGTAAGT
Found at i:7338396 original size:34 final size:34
Alignment explanation
Indices: 7338295--7338536 Score: 154
Period size: 34 Copynumber: 6.9 Consensus size: 34
7338285 AAGTTGTGTA
* *
7338295 TTATGTAAGTTAT-TATTATGTAAGTTATGTAAG
1 TTATCTAAGTTATGTATTATGTAAGTTATTTAAG
* * * *
7338328 TAATGT-A-TTATGTAAGTTGTGT-A-TGATGTT-AG
1 TTATCTAAGTTATGT-A-TTATGTAAGTTAT-TTAAG
*
7338360 TTATCAAAGTTATGTATTATGTAAGTTATTTAAG
1 TTATCTAAGTTATGTATTATGTAAGTTATTTAAG
* * * *
7338394 TTATGTAAGTTGTGTATTATGTAAGTTATGTAGG
1 TTATCTAAGTTATGTATTATGTAAGTTATTTAAG
* * *
7338428 CTATGTATGTTAAGTAATGTATTATGTAAGTTGTGTATAATGTTAG
1 ---T-TAT-CTAAGTTATGTATTATGTAA---GT-TAT--T-TAAG
*
7338474 TTATCAAAGTTATGTATTATGTAAGTTATTTAAG
1 TTATCTAAGTTATGTATTATGTAAGTTATTTAAG
* *
7338508 TTATGTAAGTTGTGTATTATGTAAGTTAT
1 TTATCTAAGTTATGTATTATGTAAGTTAT
7338537 GTAGTCTATG
Statistics
Matches: 161, Mismatches: 27, Indels: 41
0.70 0.12 0.18
Matches are distributed among these distances:
31 4 0.02
32 15 0.09
33 13 0.08
34 74 0.46
35 1 0.01
37 4 0.02
38 5 0.03
39 17 0.11
41 17 0.11
42 5 0.03
43 4 0.02
46 2 0.01
ACGTcount: A:0.31, C:0.01, G:0.20, T:0.48
Consensus pattern (34 bp):
TTATCTAAGTTATGTATTATGTAAGTTATTTAAG
Found at i:7338465 original size:114 final size:113
Alignment explanation
Indices: 7338263--7338566 Score: 456
Period size: 114 Copynumber: 2.7 Consensus size: 113
7338253 CACGGGTAAG
* * * * *
7338263 TTATGT-A-TTATGTAAGCTATGTAAGTTGTGTATTATGTAAGTTATTATTATG-TAAGTTATGT
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTA-T-GTAGGCTATG-TATGT
*
7338325 AAGTAATGTATTATGTAAGTTGTGTATGATGTTAGTTATCAAAGTTATGTA
63 AAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
7338376 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTTAA
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATG-TAA
7338441 GTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
65 GTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
* *
7338490 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGTCTATGTAT-TATG
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTAAG
7338554 TAA-GTTATTATGT
66 TAATG-TATTATGT
7338567 TATTATGTAA
Statistics
Matches: 178, Mismatches: 8, Indels: 11
0.90 0.04 0.06
Matches are distributed among these distances:
111 1 0.01
112 14 0.08
113 13 0.07
114 115 0.65
115 35 0.20
ACGTcount: A:0.30, C:0.02, G:0.20, T:0.48
Consensus pattern (113 bp):
TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTATGTAAG
TAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
Found at i:7338547 original size:34 final size:34
Alignment explanation
Indices: 7338263--7338614 Score: 152
Period size: 34 Copynumber: 10.3 Consensus size: 34
7338253 CACGGGTAAG
* *
7338263 TTATGT-A-TTATGTAAGCTATGTAAGTTGTGTA
1 TTATGTAAGTTATGTAAGTTATGTAAGTTATGTA
7338295 TTATGTAAGTTAT-T-A-TTATGTAAGTTATGTAA
1 TTATGTAAGTTATGTAAGTTATGTAAGTTATGT-A
* * *
7338327 GTAATGT-A-TTATGTAAGTTGTGT-A-TGATGTTA
1 -TTATGTAAGTTATGTAAGTTATGTAAGTTATG-TA
** *
7338359 GTTATCAAAGTTATGT-A-TTATGTAAGTTATTTAA
1 -TTATGTAAGTTATGTAAGTTATGTAAGTTATGT-A
*
7338393 GTTATGTAAGTTGTGT-A-TTATGTAAGTTATGTA
1 -TTATGTAAGTTATGTAAGTTATGTAAGTTATGTA
* * * *
7338426 GGCTATGTATGTTAAGTAATGTATTATGTAAGTTGTGTA
1 --TTATGTAAGTTATGTAA-G--TTATGTAAGTTATGTA
* * **
7338465 TAATGTTAGTTATCAAAGTTATGT-A-TTATGTAA
1 TTATGTAAGTTATGTAAGTTATGTAAGTTATGT-A
* *
7338498 GTTATTTAAGTTATGTAAGTTGTGT-A-TTATGTAA
1 -TTATGTAAGTTATGTAAGTTATGTAAGTTATGT-A
7338532 GTTATGT-AGTCTATGT-A-TTATGTAAGTTATTATGTTA
1 -TTATGTAAGT-TATGTAAGTTATGTAAG-T--TATG-TA
* * *
7338569 TTATGTAAGTTATGCAAGTTTATATATAAGTT-TATA
1 TTATGTAAGTTATGTAAG--T-TATGTAAGTTATGTA
7338605 TTATGTAAGT
1 TTATGTAAGT
7338615 ATTTCACTTT
Statistics
Matches: 247, Mismatches: 39, Indels: 64
0.71 0.11 0.18
Matches are distributed among these distances:
31 17 0.07
32 34 0.14
33 22 0.09
34 103 0.42
35 2 0.01
36 23 0.09
37 20 0.08
38 2 0.01
39 15 0.06
40 2 0.01
41 7 0.03
ACGTcount: A:0.31, C:0.02, G:0.20, T:0.48
Consensus pattern (34 bp):
TTATGTAAGTTATGTAAGTTATGTAAGTTATGTA
Found at i:7338618 original size:114 final size:114
Alignment explanation
Indices: 7338263--7338618 Score: 448
Period size: 114 Copynumber: 3.1 Consensus size: 114
7338253 CACGGGTAAG
* *
7338263 TTATGT-A-TTATGTAAGCTATGTAAGTTGTGTATTATGTAAGTTAT-TA-T-TATGTAAGTTAT
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGTCTATGT-A-TTAT
*
7338323 GTAAGTAATGTATTATGTAAGTTGTGTATGATGTTAGTTATCAAAGTTATGTA
64 GTAAGTAATGTATTATGTAAGTTGTGTAAG-TGTTAGTTAT-AAAGTTATGTA
* *
7338376 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGGCTATGTA-TGT-T
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGTCTATGTATTATGT
*
7338439 AAGTAATGTATTATGTAAGTTGTGTATAATGTTAGTTATCAAAGTTATGTA
66 AAGTAATGTATTATGTAAGTTGTGTA-AGTGTTAGTTAT-AAAGTTATGTA
7338490 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGTCTATGTATTATGT
1 TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGTCTATGTATTATGT
* * *
7338555 AAGTTATTATGTTATTATGTAAGTTATGCAAGT-TTA--TATATAAGTT-TATA
66 AAG-TA--ATG-TATTATGTAAGTTGTGTAAGTGTTAGTTATA-AAGTTATGTA
7338605 TTATGTAAG-TATTT
1 TTATGTAAGTTATTT
7338619 CACTTTTATG
Statistics
Matches: 218, Mismatches: 12, Indels: 25
0.85 0.05 0.10
Matches are distributed among these distances:
113 6 0.03
114 113 0.52
115 53 0.24
116 14 0.06
117 3 0.01
118 8 0.04
119 5 0.02
120 16 0.07
ACGTcount: A:0.31, C:0.02, G:0.19, T:0.48
Consensus pattern (114 bp):
TTATGTAAGTTATTTAAGTTATGTAAGTTGTGTATTATGTAAGTTATGTAGTCTATGTATTATGT
AAGTAATGTATTATGTAAGTTGTGTAAGTGTTAGTTATAAAGTTATGTA
Found at i:7338777 original size:121 final size:121
Alignment explanation
Indices: 7338635--7339066 Score: 751
Period size: 121 Copynumber: 3.6 Consensus size: 121
7338625 TATGTATCTT
* * * * *
7338635 ATTTATAATTATTTTTAAAATTATAAAATTCATTT-CTAATAAAATTGAAATGTAGGATATATAT
1 ATTTACAATTATTTTTAAAATTATAAAAATAATTTAC-AATAAAATTGAAATATAGGTTATATAT
7338699 CCATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
65 CCATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
* * *
7338756 ATTTACAATTATTTTTAAAATTATAAAATTTATTGACAATAAAATTGAAATATAGGTTATATATC
1 ATTTACAATTATTTTTAAAATTATAAAAATAATTTACAATAAAATTGAAATATAGGTTATATATC
7338821 CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
66 CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
*
7338877 ATTTACAATTATTTTTAAAATTATAAAAATAATTTACAATAAAATTGAAATATAGGTTACATATC
1 ATTTACAATTATTTTTAAAATTATAAAAATAATTTACAATAAAATTGAAATATAGGTTATATATC
7338942 CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
66 CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
7338998 ATTTACAATTA-TTTTAAAATTATAAAAAATAATTTACAATAAAATTGAAATATAGGTTATATAT
1 ATTTACAATTATTTTTAAAATTAT-AAAAATAATTTACAATAAAATTGAAATATAGGTTATATAT
7339062 CCATA
65 CCATA
7339067 TACTTTAATT
Statistics
Matches: 299, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
120 12 0.04
121 286 0.96
122 1 0.00
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (121 bp):
ATTTACAATTATTTTTAAAATTATAAAAATAATTTACAATAAAATTGAAATATAGGTTATATATC
CATACCATATATGGGGTGATATATTAAAAATATAGGTTTTAATATTTAAAAATAAC
Found at i:7338915 original size:31 final size:32
Alignment explanation
Indices: 7338857--7338916 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
7338847 AAAATATAGG
*
7338857 TTTTAATATTTAAAAATAACATTTACAATTAT
1 TTTTAAAATTTAAAAATAACATTTACAATTAT
7338889 TTTTAAAATTATAAAAAT-A-ATTTACAAT
1 TTTTAAAATT-TAAAAATAACATTTACAAT
7338917 AAAATTGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 9 0.35
32 10 0.38
33 7 0.27
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (32 bp):
TTTTAAAATTTAAAAATAACATTTACAATTAT
Found at i:7339106 original size:13 final size:13
Alignment explanation
Indices: 7339090--7339181 Score: 91
Period size: 13 Copynumber: 6.9 Consensus size: 13
7339080 GTAAGTCATG
7339090 TATTTAAGTAATA
1 TATTTAAGTAATA
7339103 TATTTAAGTAA-A
1 TATTTAAGTAATA
*
7339115 T-TCTAGTAAGTAATG
1 TAT-T--TAAGTAATA
7339130 TATTTAAGTAATA
1 TATTTAAGTAATA
7339143 TATTTAAGTAA-A
1 TATTTAAGTAATA
* *
7339155 TTTTAGTAATTAATA
1 TATT--TAAGTAATA
7339170 TATTTAAGTAAT
1 TATTTAAGTAAT
7339182 GTAAGTTATA
Statistics
Matches: 65, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
11 1 0.02
12 7 0.11
13 37 0.57
14 13 0.20
15 6 0.09
16 1 0.02
ACGTcount: A:0.43, C:0.01, G:0.10, T:0.46
Consensus pattern (13 bp):
TATTTAAGTAATA
Found at i:7339123 original size:40 final size:40
Alignment explanation
Indices: 7339073--7339181 Score: 182
Period size: 40 Copynumber: 2.7 Consensus size: 40
7339063 CATATACTTT
*
7339073 AATTTTAGTAAGTCATGTATTTAAGTAATATATTTAAGTA
1 AATTTTAGTAAGTAATGTATTTAAGTAATATATTTAAGTA
*
7339113 AATTCTAGTAAGTAATGTATTTAAGTAATATATTTAAGTA
1 AATTTTAGTAAGTAATGTATTTAAGTAATATATTTAAGTA
* *
7339153 AATTTTAGTAATTAATATATTTAAGTAAT
1 AATTTTAGTAAGTAATGTATTTAAGTAAT
7339182 GTAAGTTATA
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.42, C:0.02, G:0.11, T:0.45
Consensus pattern (40 bp):
AATTTTAGTAAGTAATGTATTTAAGTAATATATTTAAGTA
Found at i:7339247 original size:11 final size:11
Alignment explanation
Indices: 7339216--7339248 Score: 50
Period size: 10 Copynumber: 3.1 Consensus size: 11
7339206 ATATATTAAT
7339216 AATTCATTGAC
1 AATTCATTGAC
7339227 -ATTCATTGAC
1 AATTCATTGAC
*
7339237 AATTCACTGAC
1 AATTCATTGAC
7339248 A
1 A
7339249 GTCAATCAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
10 10 0.50
11 10 0.50
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.33
Consensus pattern (11 bp):
AATTCATTGAC
Found at i:7343240 original size:7 final size:7
Alignment explanation
Indices: 7343228--7343344 Score: 58
Period size: 7 Copynumber: 16.0 Consensus size: 7
7343218 CTTAATTGAC
7343228 ACCCTAA
1 ACCCTAA
7343235 ACCCTAA
1 ACCCTAA
7343242 ATCCCTAA
1 A-CCCTAA
*
7343250 CCCCTAA
1 ACCCTAA
*
7343257 CCCCTAA
1 ACCCTAA
*
7343264 ATCTCCTAG
1 A-C-CCTAA
*
7343273 CCCCTAA
1 ACCCTAA
* *
7343280 ATTCTTAA
1 A-CCCTAA
*
7343288 CCCCT-A
1 ACCCTAA
7343294 ACTCCTAA
1 AC-CCTAA
*
7343302 CCCCTAA
1 ACCCTAA
7343309 ATCCCTAA
1 A-CCCTAA
*
7343317 CCCCTAA
1 ACCCTAA
*
7343324 ACCTTATA
1 ACCCTA-A
*
7343332 TCCC-AA
1 ACCCTAA
7343338 ACCCTAA
1 ACCCTAA
7343345 TAATCATATA
Statistics
Matches: 81, Mismatches: 20, Indels: 18
0.68 0.17 0.15
Matches are distributed among these distances:
6 6 0.07
7 48 0.59
8 23 0.28
9 4 0.05
ACGTcount: A:0.33, C:0.44, G:0.01, T:0.22
Consensus pattern (7 bp):
ACCCTAA
Found at i:7343249 original size:15 final size:15
Alignment explanation
Indices: 7343229--7343324 Score: 99
Period size: 15 Copynumber: 6.5 Consensus size: 15
7343219 TTAATTGACA
*
7343229 CCCTAAA-CCCTAAAT
1 CCCTAAATCCCT-AAC
*
7343244 CCCT-AACCCCTAAC
1 CCCTAAATCCCTAAC
*
7343258 CCCTAAATCTCCTAGC
1 CCCTAAATC-CCTAAC
* *
7343274 CCCTAAATTCTTAAC
1 CCCTAAATCCCTAAC
*
7343289 CCCTAACT-CCTAAC
1 CCCTAAATCCCTAAC
7343303 CCCTAAATCCCTAAC
1 CCCTAAATCCCTAAC
7343318 CCCTAAA
1 CCCTAAA
7343325 CCTTATATCC
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
14 20 0.29
15 35 0.51
16 13 0.19
ACGTcount: A:0.32, C:0.45, G:0.01, T:0.22
Consensus pattern (15 bp):
CCCTAAATCCCTAAC
Found at i:7343254 original size:22 final size:22
Alignment explanation
Indices: 7343229--7343341 Score: 118
Period size: 22 Copynumber: 5.1 Consensus size: 22
7343219 TTAATTGACA
7343229 CCCTAAACCCTAAATCCCTAAC
1 CCCTAAACCCTAAATCCCTAAC
* *
7343251 CCCTAACCCCTAAATCTCCTAGC
1 CCCTAAACCCTAAATC-CCTAAC
** * *
7343274 CCCTAAATTCTTAACCCCTAAC
1 CCCTAAACCCTAAATCCCTAAC
* *
7343296 TCCTAACCCCTAAATCCCTAAC
1 CCCTAAACCCTAAATCCCTAAC
* * *
7343318 CCCTAAACCTTATATCCCAAAC
1 CCCTAAACCCTAAATCCCTAAC
7343340 CC
1 CC
7343342 TAATAATCAT
Statistics
Matches: 71, Mismatches: 19, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
22 55 0.77
23 16 0.23
ACGTcount: A:0.32, C:0.45, G:0.01, T:0.22
Consensus pattern (22 bp):
CCCTAAACCCTAAATCCCTAAC
Found at i:7343305 original size:29 final size:30
Alignment explanation
Indices: 7343251--7343323 Score: 103
Period size: 29 Copynumber: 2.4 Consensus size: 30
7343241 AATCCCTAAC
*
7343251 CCCTAACCCCTAAATCTCCTAGCCCCTAAAT
1 CCCTAACCCCT-AATCTCCTAACCCCTAAAT
* *
7343282 TCTTAACCCCTAA-CTCCTAACCCCTAAAT
1 CCCTAACCCCTAATCTCCTAACCCCTAAAT
7343311 CCCTAACCCCTAA
1 CCCTAACCCCTAA
7343324 ACCTTATATC
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 26 0.70
30 2 0.05
31 9 0.24
ACGTcount: A:0.30, C:0.45, G:0.01, T:0.23
Consensus pattern (30 bp):
CCCTAACCCCTAATCTCCTAACCCCTAAAT
Found at i:7344205 original size:41 final size:42
Alignment explanation
Indices: 7344156--7344307 Score: 107
Period size: 41 Copynumber: 3.7 Consensus size: 42
7344146 TCAACAAAAA
7344156 CGCCGCTAAA-ACCCTAACATTAGCGGCGCTTATCATAGAAT
1 CGCCGCTAAAGACCCTAACATTAGCGGCGCTTATCATAGAAT
* * * * * * * *
7344197 CGCCGCTAAAAATCTTAACTTTAGTGTCGCTTAT-ATAAAAA
1 CGCCGCTAAAGACCCTAACATTAGCGGCGCTTATCATAGAAT
* * * * *
7344238 CGCCGCTAGAAGA-CCAAATATTCGCGACGC-T-TCAAAGAAAT
1 CGCCGCTA-AAGACCCTAACATTAGCGGCGCTTATCATAG-AAT
* * *
7344279 CGCCGCTAAATACCTTAACTTTAGCGGCG
1 CGCCGCTAAAGACCCTAACATTAGCGGCG
7344308 GTTGATTAAA
Statistics
Matches: 81, Mismatches: 25, Indels: 10
0.70 0.22 0.09
Matches are distributed among these distances:
39 1 0.01
40 6 0.07
41 53 0.65
42 21 0.26
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (42 bp):
CGCCGCTAAAGACCCTAACATTAGCGGCGCTTATCATAGAAT
Found at i:7344518 original size:39 final size:39
Alignment explanation
Indices: 7344475--7344565 Score: 96
Period size: 40 Copynumber: 2.3 Consensus size: 39
7344465 TTTTGACGGA
*
7344475 AACGCCGCTAATGCATA-TTTTCAGCGGTGTTTTCTTAGT-
1 AACGCCGCTAATGCATATTTTTCAGCGGCGTTTTC-T-GTC
* * * *
7344514 AACGCCGCGAAAGCTTATTTTTTAGCGGCGTTTTCTGTC
1 AACGCCGCTAATGCATATTTTTCAGCGGCGTTTTCTGTC
7344553 AAGCGCCGCTAAT
1 AA-CGCCGCTAAT
7344566 TCTTGAATTT
Statistics
Matches: 42, Mismatches: 7, Indels: 5
0.78 0.13 0.09
Matches are distributed among these distances:
38 2 0.05
39 17 0.40
40 23 0.55
ACGTcount: A:0.21, C:0.23, G:0.22, T:0.34
Consensus pattern (39 bp):
AACGCCGCTAATGCATATTTTTCAGCGGCGTTTTCTGTC
Found at i:7345632 original size:19 final size:18
Alignment explanation
Indices: 7345595--7345634 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
7345585 CATAATGATA
* *
7345595 TATATAATATATTTTTAT
1 TATATAATACATATTTAT
7345613 TATATAATTACATATTTAT
1 TATATAA-TACATATTTAT
7345632 TAT
1 TAT
7345635 TTGGTTTTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
18 7 0.37
19 12 0.63
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (18 bp):
TATATAATACATATTTAT
Found at i:7345698 original size:38 final size:40
Alignment explanation
Indices: 7345645--7345724 Score: 110
Period size: 38 Copynumber: 2.0 Consensus size: 40
7345635 TTGGTTTTAT
**
7345645 AAATAAGATAATTATTAATT-AAA-AATTAAAAAACTTGA
1 AAATAAGATAATTATTAATTAAAATAAAAAAAAAACTTGA
* *
7345683 AAATAATATATTTATTAATTAAAATAAAAAAAAAACTTGA
1 AAATAAGATAATTATTAATTAAAATAAAAAAAAAACTTGA
7345723 AA
1 AA
7345725 CAACATGAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
38 18 0.50
39 3 0.08
40 15 0.42
ACGTcount: A:0.62, C:0.03, G:0.04, T:0.31
Consensus pattern (40 bp):
AAATAAGATAATTATTAATTAAAATAAAAAAAAAACTTGA
Found at i:7345969 original size:136 final size:136
Alignment explanation
Indices: 7345719--7345970 Score: 317
Period size: 136 Copynumber: 1.9 Consensus size: 136
7345709 AAAAAAAAAC
** * * *
7345719 TTGAAACAACATGAAATAAAAAATAAAAATGTGCTTAGAAGAGGAATCAAACCTAGGACTTAAGG
1 TTGAAACAACATGAAATAAAAAATAAAAATGTGAGTAGAAGAGGAATCAAACCGAGGACTCAAGA
** * ** ** *
7345784 ATGAAATCATTATTATTTACCCATCTAACCAAAAGAGCTAATGTATTAAAAATATTTAATTAAAA
66 ACAAAACCACCAACATTTAACCATCTAACCAAAAGAGCTAATGTATTAAAAATATTTAATTAAAA
7345849 GAAAGT
131 GAAAGT
* * *
7345855 TTGAAACAACATGAAATAAAAAATACAAATGTGAGTAGGAGATGAATCAAACCCGA-GACTCAAG
1 TTGAAACAACATGAAATAAAAAATAAAAATGTGAGTAGAAGAGGAATCAAA-CCGAGGACTCAAG
* * *
7345919 AACAAAACCACCAACATTTAACCATCTAACCAAAGGAGCTGATGTTTTAAAA
65 AACAAAACCACCAACATTTAACCATCTAACCAAAAGAGCTAATGTATTAAAA
7345971 GAAAACGCGT
Statistics
Matches: 96, Mismatches: 19, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
136 93 0.97
137 3 0.03
ACGTcount: A:0.49, C:0.14, G:0.14, T:0.23
Consensus pattern (136 bp):
TTGAAACAACATGAAATAAAAAATAAAAATGTGAGTAGAAGAGGAATCAAACCGAGGACTCAAGA
ACAAAACCACCAACATTTAACCATCTAACCAAAAGAGCTAATGTATTAAAAATATTTAATTAAAA
GAAAGT
Found at i:7348132 original size:17 final size:19
Alignment explanation
Indices: 7348095--7348134 Score: 57
Period size: 17 Copynumber: 2.2 Consensus size: 19
7348085 GTATATTAAC
*
7348095 TTATAATATATTTTAATTA
1 TTATAATATATTCTAATTA
7348114 TTATAATA-ATTCT-ATTA
1 TTATAATATATTCTAATTA
7348131 TTAT
1 TTAT
7348135 TGTTGCCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 8 0.40
18 4 0.20
19 8 0.40
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATAATATATTCTAATTA
Found at i:7349072 original size:20 final size:22
Alignment explanation
Indices: 7349044--7349091 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
7349034 TTTTTTTACT
*
7349044 AAAATAATA-CAAAAGAA-ATA
1 AAAAAAATACCAAAAGAATATA
*
7349064 AAAAAAATACCAAAATAATATA
1 AAAAAAATACCAAAAGAATATA
7349086 AAAAAA
1 AAAAAA
7349092 TTATTTACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 8 0.33
21 7 0.29
22 9 0.38
ACGTcount: A:0.77, C:0.06, G:0.02, T:0.15
Consensus pattern (22 bp):
AAAAAAATACCAAAAGAATATA
Found at i:7349092 original size:21 final size:19
Alignment explanation
Indices: 7349043--7349092 Score: 55
Period size: 21 Copynumber: 2.5 Consensus size: 19
7349033 GTTTTTTTAC
*
7349043 TAAAATAATACAAAAGAAA
1 TAAAAAAATACAAAAGAAA
*
7349062 TAAAAAAAATACCAAAATAATA
1 T-AAAAAAATA-CAAAAGAA-A
7349084 TAAAAAAAT
1 TAAAAAAAT
7349093 TATTTACCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
19 1 0.04
20 8 0.31
21 15 0.58
22 2 0.08
ACGTcount: A:0.74, C:0.06, G:0.02, T:0.18
Consensus pattern (19 bp):
TAAAAAAATACAAAAGAAA
Found at i:7350326 original size:11 final size:11
Alignment explanation
Indices: 7350307--7350353 Score: 50
Period size: 10 Copynumber: 4.7 Consensus size: 11
7350297 GGTAAATAAT
7350307 TTTTA-TATTA
1 TTTTAGTATTA
7350317 TTTTAGTATT-
1 TTTTAGTATTA
*
7350327 TTTTA-T-TTC
1 TTTTAGTATTA
7350336 TTTT-GTATTA
1 TTTTAGTATTA
7350346 TTTTAGTA
1 TTTTAGTA
7350354 AAAAACCCCA
Statistics
Matches: 31, Mismatches: 1, Indels: 9
0.76 0.02 0.22
Matches are distributed among these distances:
8 2 0.06
9 6 0.19
10 16 0.52
11 7 0.23
ACGTcount: A:0.21, C:0.02, G:0.06, T:0.70
Consensus pattern (11 bp):
TTTTAGTATTA
Found at i:7350343 original size:18 final size:20
Alignment explanation
Indices: 7350306--7350350 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
7350296 TGGTAAATAA
7350306 TTTTTATATTATTTTAGTAT
1 TTTTTATATTATTTTAGTAT
*
7350326 TTTTTAT-TTCTTTT-GTAT
1 TTTTTATATTATTTTAGTAT
7350344 TATTTTA
1 T-TTTTA
7350351 GTAAAAAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 5 0.22
19 11 0.48
20 7 0.30
ACGTcount: A:0.20, C:0.02, G:0.04, T:0.73
Consensus pattern (20 bp):
TTTTTATATTATTTTAGTAT
Found at i:7352734 original size:24 final size:24
Alignment explanation
Indices: 7352706--7352760 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
7352696 TCTATGTTCA
7352706 AATCTTTGCGTGAGTGAGAATGTT
1 AATCTTTGCGTGAGTGAGAATGTT
***
7352730 AATCTTTTTTTGAGTGAGAATGTT
1 AATCTTTGCGTGAGTGAGAATGTT
7352754 AATCTTT
1 AATCTTT
7352761 TTACTCGGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.25, C:0.07, G:0.22, T:0.45
Consensus pattern (24 bp):
AATCTTTGCGTGAGTGAGAATGTT
Found at i:7352761 original size:24 final size:24
Alignment explanation
Indices: 7352716--7352762 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
7352706 AATCTTTGCG
7352716 TGAGTGAGAATGTTAATCTTTTTT
1 TGAGTGAGAATGTTAATCTTTTTT
7352740 TGAGTGAGAATGTTAATCTTTTT
1 TGAGTGAGAATGTTAATCTTTTT
7352763 ACTCGGTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.26, C:0.04, G:0.21, T:0.49
Consensus pattern (24 bp):
TGAGTGAGAATGTTAATCTTTTTT
Found at i:7352975 original size:22 final size:22
Alignment explanation
Indices: 7352950--7352991 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7352940 CTTCTTCACT
7352950 TTTCTTCTTCGATTTTTCGCGA
1 TTTCTTCTTCGATTTTTCGCGA
* *
7352972 TTTCTTGTTGGATTTTTCGC
1 TTTCTTCTTCGATTTTTCGC
7352992 AGTCAATCAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.07, C:0.19, G:0.17, T:0.57
Consensus pattern (22 bp):
TTTCTTCTTCGATTTTTCGCGA
Found at i:7360560 original size:20 final size:20
Alignment explanation
Indices: 7360520--7360561 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
7360510 TCATATATAC
*
7360520 TTAAAATTTATAATTTTTTT
1 TTAAAATTTATAATTTCTTT
7360540 TTAAAATTTA-AATTTACTTT
1 TTAAAATTTATAATTT-CTTT
7360560 TT
1 TT
7360562 CTCTTTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 15 0.75
ACGTcount: A:0.36, C:0.02, G:0.00, T:0.62
Consensus pattern (20 bp):
TTAAAATTTATAATTTCTTT
Found at i:7361980 original size:9 final size:9
Alignment explanation
Indices: 7361966--7362017 Score: 77
Period size: 9 Copynumber: 5.8 Consensus size: 9
7361956 TATAGTTTGA
7361966 TATTCGAGT
1 TATTCGAGT
*
7361975 TATTCGAAT
1 TATTCGAGT
7361984 TATTCGAGT
1 TATTCGAGT
* *
7361993 TATTTGAAT
1 TATTCGAGT
7362002 TATTCGAGT
1 TATTCGAGT
7362011 TATTCGA
1 TATTCGA
7362018 ATTCAAAAAC
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 37 1.00
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.46
Consensus pattern (9 bp):
TATTCGAGT
Found at i:7361989 original size:18 final size:18
Alignment explanation
Indices: 7361966--7362020 Score: 101
Period size: 18 Copynumber: 3.1 Consensus size: 18
7361956 TATAGTTTGA
7361966 TATTCGAGTTATTCGAAT
1 TATTCGAGTTATTCGAAT
*
7361984 TATTCGAGTTATTTGAAT
1 TATTCGAGTTATTCGAAT
7362002 TATTCGAGTTATTCGAAT
1 TATTCGAGTTATTCGAAT
7362020 T
1 T
7362021 CAAAAACTCA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.27, C:0.09, G:0.16, T:0.47
Consensus pattern (18 bp):
TATTCGAGTTATTCGAAT
Found at i:7364483 original size:42 final size:42
Alignment explanation
Indices: 7364415--7365416 Score: 988
Period size: 42 Copynumber: 23.8 Consensus size: 42
7364405 TTCAGGTTTA
* * * * *
7364415 TACTTCGGTATATTCGATAATGCACTTATGTGCTAGTGTATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* *
7364457 TACTTTGGTATATCCGATGATACACTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * *
7364499 TACTTCGGTATATCTGATGATGCACTTATGTGTCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* ** * *
7364541 TACTTCGGTATGTCTAATTATGCACTTACTTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
** *
7364583 TACTTCGGTATATTTGATTATGCACTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * *
7364625 TACTTCGGTATGTCTGATGATGTATTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * **
7364667 TACTTCGGTATATCCGATGATGTACTTGCGTATCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * * *
7364709 TACTTTGGTATATTCGATAATGCACTTATGTGCCAGTGTATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * *
7364751 TACTTTGGTATATTCGATGATGCACTTACGTGCTAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * *
7364793 TACTTCGGTATGTTCGATGATGCACTTATGTGTCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* ** *
7364835 TACTTCGGTATGTCTAATTATGCACTTACGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* *
7364877 TACTTCGGTATGTCCGATGATGCACTTACGTGCTAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * *
7364919 TACTTCGGTATGTCCGATGATGCATTTATGTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * * **
7364961 TAATTCGGTTTATCCGATGATGTACTTGCGTATCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * ** * * * *
7365003 TACTTCGATATGTTTGATTATGCATTTGCTTGCCAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * *
7365045 TACTTCGGTATATTCGATGATGCACTTACCTGCCAGTATGTT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * **
7365087 TACTTCGATATGTCCGATGATGCACTTACGTGTTAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * *
7365129 TACTTTGGTATATTCGATGATGCACTTGCGTGCTAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * * * **
7365171 TACTTCGGTATGTCTGATAATACATTTACGTGTTAGTATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * *
7365213 TACTTCGGTATGTCCAATGATACACTTACGTGCCAATATATT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * *
7365255 TACTTCAGTATATCTGATGATGCACTTACATGCCAGTATAAT
1 TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
* * * ** *
7365297 TGCTTTGGT-TCATCTGATGATGCACCTTGTGTGCCA-TATAAT
1 TACTTCGGTAT-ATCCGATGATGCA-CTTACGTGCCAGTATATT
* * ** * *
7365339 TGCTTCGGCT-T-TCCCAATGATGCACTATTTGTGTCAGTATCTT
1 TACTTCGG-TATAT-CCGATGATGCACT-TACGTGCCAGTATATT
* * * *
7365382 TCCTTCAGTTTATCTGATGATGCAC-TACGGTGCCA
1 TACTTCGGTATATCCGATGATGCACTTAC-GTGCCA
7365417 TATTTAGATG
Statistics
Matches: 801, Mismatches: 150, Indels: 18
0.83 0.15 0.02
Matches are distributed among these distances:
41 5 0.01
42 764 0.95
43 31 0.04
44 1 0.00
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (42 bp):
TACTTCGGTATATCCGATGATGCACTTACGTGCCAGTATATT
Found at i:7370739 original size:19 final size:20
Alignment explanation
Indices: 7370709--7370746 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
7370699 TTTAAAATTC
7370709 ATTTTTAGCCTTTTTCTTTA
1 ATTTTTAGCCTTTTTCTTTA
7370729 ATTTTTA-CCTTTTTCTTT
1 ATTTTTAGCCTTTTTCTTT
7370747 TTTTGCTTGG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 11 0.61
20 7 0.39
ACGTcount: A:0.13, C:0.16, G:0.03, T:0.68
Consensus pattern (20 bp):
ATTTTTAGCCTTTTTCTTTA
Found at i:7371605 original size:6 final size:6
Alignment explanation
Indices: 7371591--7371632 Score: 57
Period size: 6 Copynumber: 7.0 Consensus size: 6
7371581 TCAACTAGAG
* * *
7371591 ATGGAA ATGGGA ATGGGA ATGGGA ATGGAA ATGGAA ATGGAA
1 ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA ATGGAA
7371633 GTGTTCGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.43, C:0.00, G:0.40, T:0.17
Consensus pattern (6 bp):
ATGGAA
Found at i:7371611 original size:12 final size:12
Alignment explanation
Indices: 7371591--7371632 Score: 66
Period size: 12 Copynumber: 3.5 Consensus size: 12
7371581 TCAACTAGAG
7371591 ATGGAAATGGGA
1 ATGGAAATGGGA
*
7371603 ATGGGAATGGGA
1 ATGGAAATGGGA
*
7371615 ATGGAAATGGAA
1 ATGGAAATGGGA
7371627 ATGGAA
1 ATGGAA
7371633 GTGTTCGATT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.43, C:0.00, G:0.40, T:0.17
Consensus pattern (12 bp):
ATGGAAATGGGA
Found at i:7377993 original size:21 final size:20
Alignment explanation
Indices: 7377960--7378002 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
7377950 GTCCCCTGTA
7377960 ACTCAAAAATTTACAGTTTTG
1 ACTCAAAAATTTAC-GTTTTG
* *
7377981 ACTCAGAATTTTACGTTTTG
1 ACTCAAAAATTTACGTTTTG
7378001 AC
1 AC
7378003 CAGTTTAGTC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.40
Consensus pattern (20 bp):
ACTCAAAAATTTACGTTTTG
Found at i:7380845 original size:38 final size:38
Alignment explanation
Indices: 7380781--7380856 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 38
7380771 GCTCCTATTT
* **
7380781 AAAAGAAATAAGGATGATGTTGAATCACAGTTTCATAC
1 AAAAAAAATAAGGATGATCATGAATCACAGTTTCATAC
7380819 AAAAAAAATAAGGATGA-CATGAAATCACAGTTTCATAC
1 AAAAAAAATAAGGATGATCATG-AATCACAGTTTCATAC
7380857 CGTCTCTTCT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 2 0.06
38 32 0.94
ACGTcount: A:0.49, C:0.12, G:0.16, T:0.24
Consensus pattern (38 bp):
AAAAAAAATAAGGATGATCATGAATCACAGTTTCATAC
Found at i:7391631 original size:180 final size:180
Alignment explanation
Indices: 7391327--7391692 Score: 642
Period size: 180 Copynumber: 2.0 Consensus size: 180
7391317 TTTTAGGACT
* *
7391327 CAAAATATGTTAGATTATCATTCAAAAACTTCATATAATGCACGAGTATATCCATCTAAGAAAGA
1 CAAAATATGTTAGATTACCATTCAAAAAATTCATATAATGCACGAGTATATCCATCTAAGAAAGA
7391392 TCATCTCAAGATACAAAATGATATCAAACATGCATGACATAGTTTTGGAACCACTTAGCTACTTT
66 TCATCTCAAGATACAAAATGATATCAAACATGCATGACATAGTTTTGGAACCACTTAGCTACTTT
* *
7391457 ACAACAAAAATCCATATGATTCTAAATCTATGTACAAGCTATTCTATTAC
131 ACAACAAAAATCCATATGATTCTAAATCTATGTACAAGCCACTCTATTAC
* *
7391507 CGAAATATGTTAGATTACCATTCAAAAAATTCATATAATGCATGAGTATATCCATCTAAGAAAGA
1 CAAAATATGTTAGATTACCATTCAAAAAATTCATATAATGCACGAGTATATCCATCTAAGAAAGA
* * *
7391572 TCATCTCGAGGTACAAAATGATATTAAACATGCATGACATAGTTTTGGAACCACTTAGCTACTTT
66 TCATCTCAAGATACAAAATGATATCAAACATGCATGACATAGTTTTGGAACCACTTAGCTACTTT
*
7391637 ACAACAAAAATCCATATGGTTCTAAATCTATGTACAAGCCACTCTATTAC
131 ACAACAAAAATCCATATGATTCTAAATCTATGTACAAGCCACTCTATTAC
7391687 CAAAAT
1 CAAAAT
7391693 CTAAGTTCCA
Statistics
Matches: 175, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
180 175 1.00
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (180 bp):
CAAAATATGTTAGATTACCATTCAAAAAATTCATATAATGCACGAGTATATCCATCTAAGAAAGA
TCATCTCAAGATACAAAATGATATCAAACATGCATGACATAGTTTTGGAACCACTTAGCTACTTT
ACAACAAAAATCCATATGATTCTAAATCTATGTACAAGCCACTCTATTAC
Found at i:7392562 original size:44 final size:44
Alignment explanation
Indices: 7392390--7392594 Score: 223
Period size: 44 Copynumber: 4.6 Consensus size: 44
7392380 CATCGTGGCG
* * * **
7392390 AATCTTATCCCCCTAAAGTTGTAGTGGAGCAGATTAAAGCCAC-
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATACT
** * *
7392433 AAGTCAGATCTCCCTGAAGTTGCAGTGGGGCAGATTGAAGATACT
1 AA-TCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATACT
* * * *
7392478 AATCTTATCTCCCTGATGTTGCAGTGTAGCAAATTGAAGATACT
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATACT
* *
7392522 AATTTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATA-CT
* * *
7392567 AATCTCATTTCCCTAAAGTTGTAGTGGA
1 AATCTTATCTCCCTGAAGTTGTAGTGGA
7392595 ACCGATTAAA
Statistics
Matches: 134, Mismatches: 25, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
43 2 0.01
44 105 0.78
45 27 0.20
ACGTcount: A:0.30, C:0.18, G:0.22, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATACT
Found at i:7392800 original size:146 final size:147
Alignment explanation
Indices: 7392526--7392894 Score: 494
Period size: 146 Copynumber: 2.5 Consensus size: 147
7392516 GATACTAATT
* *
7392526 TTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAGATAGCAAATCTCATTTCCCTAAAGTTGTAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTCATTTCCCTGAAGTTGTAG
* * * **
7392591 TGGAACCGATTAAAGCTACAAGTCACGAATCCTATACCTCTAAAGTTGTAGTAGGTCGAATTAAA
66 TGGAACAGATTAAAGCTACAAGTCACAAATCCTATACCTCTAAAGTTGTAGGAGAACGAATTAAA
*
7392656 TCTACCA-TGACAAATC
131 GCTACCAGTGACAAATC
** *
7392672 TTATCTCCCTGAAGTTGCAGTGGAGCATCTTGAAGATAGCAAATCTCATTTCCTTGAAGTTGTAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTCATTTCCCTGAAGTTGTAG
* *
7392737 TGGAACAGATTAAAGCTACAAGTCATAAATCTTATACCTCTAAAGTTGTAGCGA-AAC-AGATTA
66 TGGAACAGATTAAAGCTACAAGTCACAAATCCTATACCTCTAAAGTTGTAG-GAGAACGA-ATTA
* *
7392800 AAGCTACGAGTTACAAATC
129 AAGCTACCAGTGACAAATC
* * * * * * *
7392819 TTATCTCCCTGAAGTTTCAGTGGAGCAGATTGTAGAT-GCGAGTCTAATCTCCCTGAAGTTGCAG
1 TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTCATTTCCCTGAAGTTGTAG
7392883 TGGAACAGATTA
66 TGGAACAGATTA
7392895 TAGATGCGAG
Statistics
Matches: 195, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
145 1 0.01
146 152 0.78
147 42 0.22
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (147 bp):
TTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGATAGCAAATCTCATTTCCCTGAAGTTGTAG
TGGAACAGATTAAAGCTACAAGTCACAAATCCTATACCTCTAAAGTTGTAGGAGAACGAATTAAA
GCTACCAGTGACAAATC
Found at i:7392848 original size:51 final size:50
Alignment explanation
Indices: 7392526--7392849 Score: 185
Period size: 51 Copynumber: 6.6 Consensus size: 50
7392516 GATACTAATT
* * *
7392526 TTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAG--A-TAG--CAAATC
1 TTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGTACAAATC
* * * * *
7392571 TCATTTCCCTAAAGTTGTAGTGGAACCGATTAAAGCTACAAGTCACGAATC
1 TTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGT-ACAAATC
* * * * * *
7392622 CTATAC-CTCTAAAGTTGTAGTAGG-TC-GAATTAAATCTACCA-TGACAAATC
1 TTAT-CTCCCTGAAGTTGTAGT-GGAACAG-ATTAAAGCTACAAGT-ACAAATC
* * ** * *
7392672 TTATCTCCCTGAAGTTGCAGTGGAGCATCTTGAAG--A-TAG--CAAATC
1 TTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGTACAAATC
* * * *
7392717 TCATTTCCTTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGTCATAAATC
1 TTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGT-ACAAATC
* * * * *
7392768 TTATAC-CTCTAAAGTTGTAGCGAAACAGATTAAAGCTACGAGTTACAAATC
1 TTAT-CTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAG-TACAAATC
*
7392819 TTATCTCCCTGAAGTT-TCAGTGGAGCAGATT
1 TTATCTCCCTGAAGTTGT-AGTGGAACAGATT
7392850 GTAGATGCGA
Statistics
Matches: 205, Mismatches: 51, Indels: 40
0.69 0.17 0.14
Matches are distributed among these distances:
45 62 0.30
47 3 0.01
48 5 0.02
49 3 0.01
50 30 0.15
51 99 0.48
52 3 0.01
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (50 bp):
TTATCTCCCTGAAGTTGTAGTGGAACAGATTAAAGCTACAAGTACAAATC
Found at i:7392884 original size:44 final size:44
Alignment explanation
Indices: 7392821--7392922 Score: 150
Period size: 44 Copynumber: 2.3 Consensus size: 44
7392811 TACAAATCTT
* * *
7392821 ATCTCCCTGAAGTTTCAGTGGAGCAGATTGTAGATGCGAGTCTA
1 ATCTCCCTGAAGTTGCAGTGGAACAGATTATAGATGCGAGTCTA
7392865 ATCTCCCTGAAGTTGCAGTGGAACAGATTATAGATGCGAGTCTA
1 ATCTCCCTGAAGTTGCAGTGGAACAGATTATAGATGCGAGTCTA
* **
7392909 GTCTCATTGAAGTT
1 ATCTCCCTGAAGTT
7392923 ATAGTGAAGT
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 52 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (44 bp):
ATCTCCCTGAAGTTGCAGTGGAACAGATTATAGATGCGAGTCTA
Found at i:7392937 original size:44 final size:43
Alignment explanation
Indices: 7392821--7392937 Score: 119
Period size: 44 Copynumber: 2.7 Consensus size: 43
7392811 TACAAATCTT
* * *
7392821 ATCTCCCTGAAGTTTCAGTGGAGCAGATTGTAGATGCGAGTCTA
1 ATCTCACTGAAGTTT-AGTGAAGCAGATTATAGATGCGAGTCTA
* *
7392865 ATCTCCCTGAAGTTGCAGTGGAA-CAGATTATAGATGCGAGTCTA
1 ATCTCACTGAAGTT-TAGT-GAAGCAGATTATAGATGCGAGTCTA
* * *
7392909 GTCTCATTGAAGTTATAGTGAAGTAGATT
1 ATCTCACTGAAGTT-TAGTGAAGCAGATT
7392938 GAAGCACTAA
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
43 3 0.05
44 56 0.92
45 2 0.03
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.31
Consensus pattern (43 bp):
ATCTCACTGAAGTTTAGTGAAGCAGATTATAGATGCGAGTCTA
Found at i:7393996 original size:20 final size:20
Alignment explanation
Indices: 7393971--7394008 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
7393961 GGAAGAGGGT
*
7393971 TTCTTTTTCTAAAAAAATGA
1 TTCTTTTTCGAAAAAAATGA
*
7393991 TTCTTTTTGGAAAAAAAT
1 TTCTTTTTCGAAAAAAAT
7394009 TGACTTAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.08, G:0.08, T:0.45
Consensus pattern (20 bp):
TTCTTTTTCGAAAAAAATGA
Found at i:7395222 original size:21 final size:21
Alignment explanation
Indices: 7395198--7395237 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7395188 CGAATATCCT
* *
7395198 TTTAAAATCAAAATAATAAGA
1 TTTAAAATAAAAAAAATAAGA
7395219 TTTAAAATAAAAAAAATAA
1 TTTAAAATAAAAAAAATAA
7395238 AGGCAAGCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.68, C:0.03, G:0.03, T:0.28
Consensus pattern (21 bp):
TTTAAAATAAAAAAAATAAGA
Found at i:7395863 original size:22 final size:23
Alignment explanation
Indices: 7395838--7395880 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
7395828 AGAAATATAC
*
7395838 ATGGGC-AAAGTTAAAATTTTGG
1 ATGGGCTAAAATTAAAATTTTGG
*
7395860 ATGGGCTAAAATTAAATTTTT
1 ATGGGCTAAAATTAAAATTTT
7395881 ATCAAAGTTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 6 0.33
23 12 0.67
ACGTcount: A:0.37, C:0.05, G:0.21, T:0.37
Consensus pattern (23 bp):
ATGGGCTAAAATTAAAATTTTGG
Found at i:7405549 original size:12 final size:14
Alignment explanation
Indices: 7405520--7405551 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7405510 GCGTTTGTTG
7405520 ATATATATTTAAAT
1 ATATATATTTAAAT
*
7405534 ATATATATTTGAAT
1 ATATATATTTAAAT
7405548 ATAT
1 ATAT
7405552 TGGTACTGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (14 bp):
ATATATATTTAAAT
Found at i:7407879 original size:21 final size:21
Alignment explanation
Indices: 7407855--7407896 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
7407845 TTAGGGATAT
7407855 AAATAAT-TAATTCAAGTATTA
1 AAATAATATAA-TCAAGTATTA
*
7407876 AAATAATATAATCATGTATTA
1 AAATAATATAATCAAGTATTA
7407897 TTATATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 16 0.84
22 3 0.16
ACGTcount: A:0.52, C:0.05, G:0.05, T:0.38
Consensus pattern (21 bp):
AAATAATATAATCAAGTATTA
Found at i:7409927 original size:47 final size:47
Alignment explanation
Indices: 7409848--7410018 Score: 229
Period size: 47 Copynumber: 3.6 Consensus size: 47
7409838 AGTTGACAGT
* *
7409848 TCATTTGCTCGACCT-GTGGTTTATCTACAATGTATTCTAGTCGGCAG
1 TCATATGCTCGA-CTAGTGGTTTATCCACAATGTATTCTAGTCGGCAG
* * *
7409895 TCATATGCTCGACTAGTGGTTTATCCATAATGTATTCTAATTGGCAG
1 TCATATGCTCGACTAGTGGTTTATCCACAATGTATTCTAGTCGGCAG
* * * *
7409942 TCATTTGCTCAACTAGTGGTTTATCCACAACGTATTTTAGTCGGCA-
1 TCATATGCTCGACTAGTGGTTTATCCACAATGTATTCTAGTCGGCAG
7409988 TCCATATGCTCGACTAGTGGTTTATCCACAA
1 T-CATATGCTCGACTAGTGGTTTATCCACAA
7410019 CATATTACCA
Statistics
Matches: 108, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
46 3 0.03
47 105 0.97
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.37
Consensus pattern (47 bp):
TCATATGCTCGACTAGTGGTTTATCCACAATGTATTCTAGTCGGCAG
Found at i:7411841 original size:45 final size:45
Alignment explanation
Indices: 7411742--7411842 Score: 134
Period size: 45 Copynumber: 2.2 Consensus size: 45
7411732 ATATGCCGAC
* *
7411742 TACTGTTACTGTTACCGATTCGACACTTTGTGTGTCGAATATTGT
1 TACTGTTACTGTTACAGATTCGACACTTTGTGTGTCGAATACTGT
*
7411787 TA-TCGTTACTGTTACAGATTC-AGCACTTTGTGTGTTGAATACTGT
1 TACT-GTTACTGTTACAGATTCGA-CACTTTGTGTGTCGAATACTGT
*
7411832 TACTATTACTG
1 TACTGTTACTG
7411843 CTACCGTTAC
Statistics
Matches: 49, Mismatches: 4, Indels: 6
0.83 0.07 0.10
Matches are distributed among these distances:
44 2 0.04
45 46 0.94
46 1 0.02
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.43
Consensus pattern (45 bp):
TACTGTTACTGTTACAGATTCGACACTTTGTGTGTCGAATACTGT
Found at i:7413668 original size:15 final size:16
Alignment explanation
Indices: 7413648--7413678 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
7413638 GTGTATGAAT
7413648 ATATATAT-TATAAAA
1 ATATATATGTATAAAA
7413663 ATATATATGTATAAAA
1 ATATATATGTATAAAA
7413679 TGTAAAATAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 8 0.53
16 7 0.47
ACGTcount: A:0.58, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
ATATATATGTATAAAA
Found at i:7414494 original size:26 final size:27
Alignment explanation
Indices: 7414449--7414499 Score: 63
Period size: 26 Copynumber: 1.9 Consensus size: 27
7414439 TATTCGTTTT
7414449 AAAAAACAAGAAAGAAAATA-AAAAGA
1 AAAAAACAAGAAAGAAAATAGAAAAGA
7414475 AAAAAAC-AGTAAA-AAGAATAGAAAA
1 AAAAAACAAG-AAAGAA-AATAGAAAA
7414500 ACGGAGCCAA
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
25 4 0.18
26 14 0.64
27 4 0.18
ACGTcount: A:0.78, C:0.04, G:0.12, T:0.06
Consensus pattern (27 bp):
AAAAAACAAGAAAGAAAATAGAAAAGA
Found at i:7414778 original size:17 final size:17
Alignment explanation
Indices: 7414753--7414789 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
7414743 CAGGGGCGGT
7414753 TGCTACGACGTGGGGCG
1 TGCTACGACGTGGGGCG
*
7414770 TGCTGCGACGTGGGGCG
1 TGCTACGACGTGGGGCG
7414787 TGC
1 TGC
7414790 GGTGCCAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.08, C:0.24, G:0.49, T:0.19
Consensus pattern (17 bp):
TGCTACGACGTGGGGCG
Found at i:7415836 original size:44 final size:44
Alignment explanation
Indices: 7415695--7416454 Score: 271
Period size: 44 Copynumber: 17.3 Consensus size: 44
7415685 GCTGCCAGTA
* * * *
7415695 CAGGAAGACAAAATTTGCTATTTTCAACCTACTCCACTACTACT
1 CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTACTACT
* * *** * * * * * * *
7415739 TAGGGAGACAAG-GCTGAGGTCTTCGATCTACTTCGCTGCCAAT
1 CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTACTACT
* * * *
7415782 ACAAGAAGACAAGATCTGTTATTTTTAATCTACTCCACTACTACT
1 -CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTACTACT
* * * * * * * * *
7415827 CAGGGAGACAAGGT-TGGTATCTTCGATCTACTTCGCTGCCAAT
1 CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTACTACT
* * *
7415870 ACAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTACTGCT
1 -CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTACTACT
* * * * * * * *
7415915 CAGGGAGACAAG-GCTGGTATCTTCAATCTACTTCGCTGCCAAT
1 CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTACTACT
* * * * * *
7415958 ACAAGAAGAAAATATCTGCTATTTTCAACCTACTCCACTACTGCT
1 -CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTACTACT
* * * * * * * * * *
7416003 TAGGGAGACAAG-GCTGGTATCTTCGATTTACTTCGCTGCCAACAT
1 CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACT-ACTAC-T
* * * * *
7416048 -AGGAAAACAAAATCTGCTATTTTCAACCTACTCCACTACTGC-
1 CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTACTACT
* *** * * * * * * * *
7416090 CTAGGGAGACAAG-GCTGAGGTCTTCGATCTATTTCGCTGCCAACA
1 C-AGGGAGACAAGATCTGCTATTTTCAATCTACTCCACT-ACTACT
* * *
7416135 CAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTACTGCT
1 CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTACTACT
* * * *** * * * * * *
7416179 TAGAGAGACAAG-GCTGAGGTCTTCGATCTACTTCGCTGCTAACA
1 CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTACT-ACT
* * * *
7416223 CAGGAAGAGAAGATCTGCTATTTTCAACCTACTCCACTACTACC
1 CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTACTACT
* *** * * * * * *
7416267 CAGGGAGACAAG-GCTGAGGTCTTCAATCTATTTCGCTACCAACA
1 CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTA-CTACT
* * * * * *
7416311 CATGAAGACAAGATCTGCTATTTTCAACCTACTCTACTACTGCC
1 CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTACTACT
* *** * * * * * *
7416355 CAGGGAGACAAG-GCTGAGGTCTTCGATCTACTTCGCTGCTAACA
1 CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTACT-ACT
* * *
7416399 CAGGAAGACAAGATCTGCTATTTTCAACCTACTCCACTACTACC
1 CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTACTACT
7416443 CAGGGAGACAAG
1 CAGGGAGACAAG
7416455 GCTGAAGTCT
Statistics
Matches: 469, Mismatches: 227, Indels: 40
0.64 0.31 0.05
Matches are distributed among these distances:
43 143 0.30
44 181 0.39
45 145 0.31
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.26
Consensus pattern (44 bp):
CAGGGAGACAAGATCTGCTATTTTCAATCTACTCCACTACTACT
Found at i:7416486 original size:88 final size:88
Alignment explanation
Indices: 7415660--7416468 Score: 1124
Period size: 88 Copynumber: 9.2 Consensus size: 88
7415650 TCAAGGTGAT
* * ** * *
7415660 AAGGCTG-GTGTCCTCGATCTGCTTCGCTGCCAGTACAGGAAGACAAAATTTGCTATTTTCAACC
1 AAGGCTGAG-GTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTATTTTCAACC
* *
7415724 TACTCCACTACTACTTAGGGAGAC
65 TACTCCACTACTGCTCAGGGAGAC
* * * * *
7415748 AAGGCTGAGGTCTTCGATCTACTTCGCTGCCAATACAAGAAGACAAGATCTGTTATTTTTAATCT
1 AAGGCTGAGGTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTATTTTCAACCT
*
7415813 ACTCCACTACTACTCAGGGAGAC
66 ACTCCACTACTGCTCAGGGAGAC
* * *
7415836 AAGGTTG-GTATCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATTTTCAACC
1 AAGGCTGAG-GTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTATTTTCAACC
7415900 TACTCCACTACTGCTCAGGGAGAC
65 TACTCCACTACTGCTCAGGGAGAC
* * * * * *
7415924 AAGGCTG-GTATCTTCAATCTACTTCGCTGCCAATACAAGAAGAAAATATCTGCTATTTTCAACC
1 AAGGCTGAG-GTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTATTTTCAACC
*
7415988 TACTCCACTACTGCTTAGGGAGAC
65 TACTCCACTACTGCTCAGGGAGAC
* * * * *
7416012 AAGGCTG-GTATCTTCGATTTACTTCGCTGCCAACATAGGAAAACAAAATCTGCTATTTTCAACC
1 AAGGCTGAG-GTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTATTTTCAACC
7416076 TACTCCACTACTGC-CTAGGGAGAC
65 TACTCCACTACTGCTC-AGGGAGAC
*
7416100 AAGGCTGAGGTCTTCGATCTATTTCGCTGCCAACACAGGAAGACAAGATCTGCTATTTTCAACCT
1 AAGGCTGAGGTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTATTTTCAACCT
* *
7416165 ACTCCACTACTGCTTAGAGAGAC
66 ACTCCACTACTGCTCAGGGAGAC
* *
7416188 AAGGCTGAGGTCTTCGATCTACTTCGCTGCTAACACAGGAAGAGAAGATCTGCTATTTTCAACCT
1 AAGGCTGAGGTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTATTTTCAACCT
* *
7416253 ACTCCACTACTACCCAGGGAGAC
66 ACTCCACTACTGCTCAGGGAGAC
* * * *
7416276 AAGGCTGAGGTCTTCAATCTATTTCGCTACCAACACATGAAGACAAGATCTGCTATTTTCAACCT
1 AAGGCTGAGGTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTATTTTCAACCT
* *
7416341 ACTCTACTACTGCCCAGGGAGAC
66 ACTCCACTACTGCTCAGGGAGAC
*
7416364 AAGGCTGAGGTCTTCGATCTACTTCGCTGCTAACACAGGAAGACAAGATCTGCTATTTTCAACCT
1 AAGGCTGAGGTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTATTTTCAACCT
* *
7416429 ACTCCACTACTACCCAGGGAGAC
66 ACTCCACTACTGCTCAGGGAGAC
*
7416452 AAGGCTGAAGTCTTCGA
1 AAGGCTGAGGTCTTCGA
7416469 CTTGTTCTCT
Statistics
Matches: 653, Mismatches: 63, Indels: 10
0.90 0.09 0.01
Matches are distributed among these distances:
87 1 0.00
88 650 1.00
89 2 0.00
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (88 bp):
AAGGCTGAGGTCTTCGATCTACTTCGCTGCCAACACAGGAAGACAAGATCTGCTATTTTCAACCT
ACTCCACTACTGCTCAGGGAGAC
Found at i:7417743 original size:14 final size:13
Alignment explanation
Indices: 7417726--7417783 Score: 68
Period size: 13 Copynumber: 4.5 Consensus size: 13
7417716 TTACTTTCTC
7417726 CATTTTTCATTTTT
1 CATTTTTCA-TTTT
7417740 CATTTTTCATTTT
1 CATTTTTCATTTT
*
7417753 CATTTTTC--TAT
1 CATTTTTCATTTT
7417764 CATTTTTTCA-TTT
1 CA-TTTTTCATTTT
7417777 CATTTTT
1 CATTTTT
7417784 TTACGACTCA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
11 4 0.10
12 11 0.28
13 16 0.40
14 9 0.22
ACGTcount: A:0.16, C:0.16, G:0.00, T:0.69
Consensus pattern (13 bp):
CATTTTTCATTTT
Found at i:7417745 original size:6 final size:7
Alignment explanation
Indices: 7417726--7417760 Score: 63
Period size: 7 Copynumber: 5.1 Consensus size: 7
7417716 TTACTTTCTC
7417726 CATTTTT
1 CATTTTT
7417733 CATTTTT
1 CATTTTT
7417740 CATTTTT
1 CATTTTT
7417747 CA-TTTT
1 CATTTTT
7417753 CATTTTT
1 CATTTTT
7417760 C
1 C
7417761 TATCATTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
6 6 0.22
7 21 0.78
ACGTcount: A:0.14, C:0.17, G:0.00, T:0.69
Consensus pattern (7 bp):
CATTTTT
Found at i:7418340 original size:6 final size:6
Alignment explanation
Indices: 7418283--7418387 Score: 51
Period size: 6 Copynumber: 17.8 Consensus size: 6
7418273 TTTGTTCCTA
* * * * *
7418283 TTTTTA TTTTTC TCTTTC -TTTTC TTCTTT- TTTTTG TTTTT- TGTTCCTA
1 TTTTTC TTTTTC TTTTTC TTTTTC TT-TTTC TTTTTC TTTTTC T-TT-TTC
* * *
7418331 TTTTTC TTTTTC -TCTTC CTTTT- ATTTTC TTTTTCC TTTTTC TTTTT-
1 TTTTTC TTTTTC TTTTTC TTTTTC TTTTTC TTTTT-C TTTTTC TTTTTC
*
7418377 TTTTTG TTTTT
1 TTTTTC TTTTT
7418388 TATTTTTTTG
Statistics
Matches: 79, Mismatches: 10, Indels: 20
0.72 0.09 0.18
Matches are distributed among these distances:
5 21 0.27
6 45 0.57
7 12 0.15
8 1 0.01
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTTTC
Found at i:7418363 original size:48 final size:48
Alignment explanation
Indices: 7418260--7418363 Score: 149
Period size: 48 Copynumber: 2.2 Consensus size: 48
7418250 GAGGTTTTTG
* *
7418260 TTTC-TTTTTGGTTTTTGTTCCTATTTTTATTTTTCTCTTTCTTTTCT
1 TTTCTTTTTTGGTTTTTGTTCCTATTTTTATTTTTCTCTTCCTTTTAT
* *
7418307 TCTT-TTTTTTGTTTTTTGTTCCTATTTTTCTTTTTCTCTTCCTTTTAT
1 T-TTCTTTTTTGGTTTTTGTTCCTATTTTTATTTTTCTCTTCCTTTTAT
7418355 TTTCTTTTT
1 TTTCTTTTT
7418364 CCTTTTTCTT
Statistics
Matches: 50, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
47 3 0.06
48 47 0.94
ACGTcount: A:0.04, C:0.15, G:0.05, T:0.76
Consensus pattern (48 bp):
TTTCTTTTTTGGTTTTTGTTCCTATTTTTATTTTTCTCTTCCTTTTAT
Found at i:7418379 original size:17 final size:17
Alignment explanation
Indices: 7418312--7418380 Score: 59
Period size: 17 Copynumber: 3.9 Consensus size: 17
7418302 TTTCTTCTTT
* *
7418312 TTTTTGTTTTTTGTTCC
1 TTTTTCTTTTTTTTTCC
*
7418329 TATTTTTCTTTTTCTCTTCC
1 --TTTTTCTTTTT-TTTTCC
*
7418349 TTTTAT-TTTCTTTTTCC
1 TTTT-TCTTTTTTTTTCC
7418366 TTTTTCTTTTTTTTT
1 TTTTTCTTTTTTTTT
7418381 TGTTTTTTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
16 1 0.02
17 17 0.40
18 8 0.19
19 11 0.26
20 5 0.12
ACGTcount: A:0.03, C:0.16, G:0.03, T:0.78
Consensus pattern (17 bp):
TTTTTCTTTTTTTTTCC
Found at i:7423060 original size:18 final size:17
Alignment explanation
Indices: 7423015--7423062 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 17
7423005 TAAGTATAAT
7423015 AATAATATAATAACAAC
1 AATAATATAATAACAAC
* *
7423032 AATCATAATAATAATAAC
1 AATAAT-ATAATAACAAC
7423050 AAATAATATAATA
1 -AATAATATAATA
7423063 TAGTAAAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
17 5 0.19
18 16 0.62
19 5 0.19
ACGTcount: A:0.65, C:0.08, G:0.00, T:0.27
Consensus pattern (17 bp):
AATAATATAATAACAAC
Found at i:7423060 original size:21 final size:21
Alignment explanation
Indices: 7423010--7423062 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 21
7423000 ATATATAAGT
7423010 ATAATAATAAT-ATAATAACA
1 ATAATAATAATAATAATAACA
* *
7423030 ACAATCATAATAATAATAACAA
1 ATAATAATAATAATAATAAC-A
7423052 ATAAT-ATAATA
1 ATAATAATAATA
7423063 TAGTAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 9 0.32
21 14 0.50
22 5 0.18
ACGTcount: A:0.64, C:0.08, G:0.00, T:0.28
Consensus pattern (21 bp):
ATAATAATAATAATAATAACA
Found at i:7426513 original size:127 final size:127
Alignment explanation
Indices: 7426361--7426615 Score: 510
Period size: 127 Copynumber: 2.0 Consensus size: 127
7426351 GATATGTGAC
7426361 AGCGATCAAATCATCGTAATGTCATCATCCAATTTTTTTTTAAAAAAATACAAAATCTAAAACTT
1 AGCGATCAAATCATCGTAATGTCATCATCCAATTTTTTTTTAAAAAAATACAAAATCTAAAACTT
7426426 ATTAAAAAATTATGTAAAAAATTTATAACTTTTCTAATTTTATATAAAATATGTATTTTTTT
66 ATTAAAAAATTATGTAAAAAATTTATAACTTTTCTAATTTTATATAAAATATGTATTTTTTT
7426488 AGCGATCAAATCATCGTAATGTCATCATCCAATTTTTTTTTAAAAAAATACAAAATCTAAAACTT
1 AGCGATCAAATCATCGTAATGTCATCATCCAATTTTTTTTTAAAAAAATACAAAATCTAAAACTT
7426553 ATTAAAAAATTATGTAAAAAATTTATAACTTTTCTAATTTTATATAAAATATGTATTTTTTT
66 ATTAAAAAATTATGTAAAAAATTTATAACTTTTCTAATTTTATATAAAATATGTATTTTTTT
7426615 A
1 A
7426616 TTTTTTATAA
Statistics
Matches: 128, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
127 128 1.00
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.42
Consensus pattern (127 bp):
AGCGATCAAATCATCGTAATGTCATCATCCAATTTTTTTTTAAAAAAATACAAAATCTAAAACTT
ATTAAAAAATTATGTAAAAAATTTATAACTTTTCTAATTTTATATAAAATATGTATTTTTTT
Found at i:7426602 original size:28 final size:26
Alignment explanation
Indices: 7426570--7426632 Score: 63
Period size: 26 Copynumber: 2.3 Consensus size: 26
7426560 AATTATGTAA
7426570 AAAATTTATAACTTTTCTAATTTTATAT
1 AAAATTTAT-A-TTTTCTAATTTTATAT
* * * * *
7426598 AAAATATGTATTTTTTTATTTTTTAT
1 AAAATTTATATTTTCTAATTTTATAT
7426624 AAAATTTAT
1 AAAATTTAT
7426633 TTAAAAAATT
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
26 20 0.71
27 1 0.04
28 7 0.25
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (26 bp):
AAAATTTATATTTTCTAATTTTATAT
Found at i:7426711 original size:17 final size:19
Alignment explanation
Indices: 7426691--7426728 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7426681 TTTATAAAAT
7426691 TAAAAA-ATTT-ATGTTTA
1 TAAAAACATTTGATGTTTA
*
7426708 TAAAAACATTTGATTTTTA
1 TAAAAACATTTGATGTTTA
7426727 TA
1 TA
7426729 TTTTTGTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 4 0.22
19 8 0.44
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.47
Consensus pattern (19 bp):
TAAAAACATTTGATGTTTA
Found at i:7427466 original size:73 final size:72
Alignment explanation
Indices: 7427331--7427498 Score: 228
Period size: 73 Copynumber: 2.3 Consensus size: 72
7427321 GAAATAAGAA
** * *
7427331 TTAGCGGCGTTTTCCAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGCTGTTTACCGAGCTTT
1 TTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACACCGTTTACCGAGCTTT
7427396 CGGGGAT
66 CGGGGAT
* * * *
7427403 TTTGTGGCGTTTTTAAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACACCGTTTTCTGAGCTT
1 TTAGCGGCGTTTTTAAGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACACCGTTTACCGAGCTT
*
7427468 TCGTGGAT
65 TCGGGGAT
* *
7427476 TTAGCGGTGTTTTTAAGGAAGCG
1 TTAGCGGCGTTTTTAAGAAAGCG
7427499 TCGCTAATGC
Statistics
Matches: 82, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
72 23 0.28
73 59 0.72
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (72 bp):
TTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACACCGTTTACCGAGCTTT
CGGGGAT
Found at i:7427551 original size:114 final size:115
Alignment explanation
Indices: 7427410--7427658 Score: 358
Period size: 115 Copynumber: 2.2 Consensus size: 115
7427400 GATTTTGTGG
*
7427410 CGTTTTTAAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACACCGTTTTCTGAG-CTTTCGTGG
1 CGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACACCGTTTTCTGAGTCTTTCG-GG
* * *
7427474 -ATTTAGCGGTGTTTTTAAGGAAGCGTCGCTAATGCTCAGGGCTTTAGCGA
65 TATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGA
** * *
7427524 CGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGATGCCGTTTTTTGAGTTTTTCGGGT
1 CGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACACCGTTTTCTGAGTCTTTCGGGT
* * * *
7427589 GTTTAGTGGCGTTTTTAAGAAAGCGCCTCTAATGCTCAGGGCTTTAGCGG
66 ATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGA
*
7427639 CATTTTTGAGAAAGCGCCGC
1 CGTTTTTGAGAAAGCGCCGC
7427659 TAATGCTCAG
Statistics
Matches: 120, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
114 53 0.44
115 67 0.56
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (115 bp):
CGTTTTTGAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACACCGTTTTCTGAGTCTTTCGGGT
ATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGA
Found at i:7427651 original size:41 final size:41
Alignment explanation
Indices: 7427590--7427699 Score: 166
Period size: 41 Copynumber: 2.7 Consensus size: 41
7427580 TTTTCGGGTG
* * * *
7427590 TTTAGTGGCGTTTTTAAGAAAGCGCCTCTAATGCTCAGGGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGA
*
7427631 TTTAGCGGCATTTTTGAGAAAGCGCCGCTAATGCTCAGGGA
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGA
*
7427672 TTTAGCGGCGTTTTTGGGAAAGCGCCGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGC
7427700 AAGAAAAACT
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 62 1.00
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (41 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCTAATGCTCAGGGA
Found at i:7428093 original size:15 final size:15
Alignment explanation
Indices: 7428048--7428102 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
7428038 GTTATGCTTT
*
7428048 AGGGTTATGTGATTTA
1 AGGGTTA-GGGATTTA
* *
7428064 GGGGTTAGAGATTTA
1 AGGGTTAGGGATTTA
*
7428079 AGGGTTAGGGTTTTA
1 AGGGTTAGGGATTTA
*
7428094 ACGGTTAGG
1 AGGGTTAGG
7428103 TTAGAGTTTA
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
15 27 0.82
16 6 0.18
ACGTcount: A:0.24, C:0.02, G:0.38, T:0.36
Consensus pattern (15 bp):
AGGGTTAGGGATTTA
Found at i:7428406 original size:37 final size:37
Alignment explanation
Indices: 7428365--7428442 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 37
7428355 TTGTGGTTTA
* *
7428365 AGGGTTATGCTTTATGGGTTAAGTGAATTCAGGGGTT
1 AGGGTTATGCTTTAGGGGTTAAGGGAATTCAGGGGTT
* * * *
7428402 AGGGTTATGTTTTAGGGGTTATGGGGATTTAGGGGTT
1 AGGGTTATGCTTTAGGGGTTAAGGGAATTCAGGGGTT
7428439 AGGG
1 AGGG
7428443 GTTTAAGGTT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 35 1.00
ACGTcount: A:0.19, C:0.03, G:0.41, T:0.37
Consensus pattern (37 bp):
AGGGTTATGCTTTAGGGGTTAAGGGAATTCAGGGGTT
Found at i:7428442 original size:7 final size:7
Alignment explanation
Indices: 7428395--7428488 Score: 50
Period size: 7 Copynumber: 12.7 Consensus size: 7
7428385 AAGTGAATTC
7428395 AGGGGTT
1 AGGGGTT
7428402 A-GGGTT
1 AGGGGTT
* **
7428408 ATGTTTT
1 AGGGGTT
7428415 AGGGGTT
1 AGGGGTT
7428422 ATGGGGATTT
1 A-GGGG--TT
7428432 AGGGGTT
1 AGGGGTT
7428439 AGGGGTTT
1 AGGGG-TT
*
7428447 A-AGGTT
1 AGGGGTT
7428453 AGGGGGATTT
1 A-GGGG--TT
7428463 AGGGGTT
1 AGGGGTT
*
7428470 ATGGGTTT
1 A-GGGGTT
7428478 A-GGGTT
1 AGGGGTT
7428484 AGGGG
1 AGGGG
7428489 GATTTATGGG
Statistics
Matches: 67, Mismatches: 9, Indels: 22
0.68 0.09 0.22
Matches are distributed among these distances:
6 14 0.21
7 24 0.36
8 15 0.22
9 8 0.12
10 6 0.09
ACGTcount: A:0.17, C:0.00, G:0.48, T:0.35
Consensus pattern (7 bp):
AGGGGTT
Found at i:7428454 original size:14 final size:14
Alignment explanation
Indices: 7428395--7428488 Score: 75
Period size: 14 Copynumber: 6.4 Consensus size: 14
7428385 AAGTGAATTC
7428395 AGGGG-TTAGGGTT
1 AGGGGTTTAGGGTT
* *
7428408 A-TGTTTTAGGGGTT
1 AGGGGTTTA-GGGTT
7428422 ATGGGGATTTAGGGGTT
1 A-GGGG-TTTA-GGGTT
*
7428439 AGGGGTTTAAGGTT
1 AGGGGTTTAGGGTT
7428453 AGGGGGATTTAGGGGTT
1 A-GGGG-TTTA-GGGTT
*
7428470 ATGGGTTTAGGGTT
1 AGGGGTTTAGGGTT
7428484 AGGGG
1 AGGGG
7428489 GATTTATGGG
Statistics
Matches: 65, Mismatches: 8, Indels: 15
0.74 0.09 0.17
Matches are distributed among these distances:
12 1 0.02
13 4 0.06
14 20 0.31
15 12 0.18
16 12 0.18
17 16 0.25
ACGTcount: A:0.17, C:0.00, G:0.48, T:0.35
Consensus pattern (14 bp):
AGGGGTTTAGGGTT
Found at i:7428502 original size:31 final size:31
Alignment explanation
Indices: 7428403--7428502 Score: 139
Period size: 31 Copynumber: 3.2 Consensus size: 31
7428393 TCAGGGGTTA
* *
7428403 GGGTTAT-GTTTTAGGGGTTATGGGGATTTAG
1 GGGTTATGGGTTTA-GGGTTAGGGGGATTTAG
* *
7428434 GGGTTAGGGGTTTAAGGTTAGGGGGATTTAG
1 GGGTTATGGGTTTAGGGTTAGGGGGATTTAG
*
7428465 GGGTTATGGGTTTAGGGTTAGGGGGATTTAT
1 GGGTTATGGGTTTAGGGTTAGGGGGATTTAG
7428496 GGGTTAT
1 GGGTTAT
7428503 TAAATTTTAT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
31 56 0.92
32 5 0.08
ACGTcount: A:0.17, C:0.00, G:0.45, T:0.38
Consensus pattern (31 bp):
GGGTTATGGGTTTAGGGTTAGGGGGATTTAG
Found at i:7429057 original size:148 final size:149
Alignment explanation
Indices: 7428872--7429178 Score: 508
Period size: 149 Copynumber: 2.1 Consensus size: 149
7428862 GCATTTTTTA
** *
7428872 TAAAAACGCCGCTATTACTTACCTTTTCCGGCGTTTTTTGTAAAAACGCCAC-AAAAATAATTTC
1 TAAAAACGCCGCTATTACTTACCTTTTCCGGCGTTTTTCATAAAAACACCACAAAAAATAATTTC
* *
7428936 ATATTGAACAAAACGACGTCGTTTTGTTATGTTAAAAATCCTTTATTTTATCTGCTAAAAATTAT
66 ATATTGAACAAAACGACGTCGTTTTGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTAT
*
7429001 TAGTTTGTGGCGTTTTTCG
131 TAGTTTGCGGCGTTTTTCG
* * * *
7429020 TAAAAACGCCGCTATTGCTTACCTTTTGCGGGGTTTTTCATAAAAACACCACAAAAAATCATTTC
1 TAAAAACGCCGCTATTACTTACCTTTTCCGGCGTTTTTCATAAAAACACCACAAAAAATAATTTC
*
7429085 ATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTAT
66 ATATTGAACAAAACGACGTCGTTTTGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTAT
7429150 TAGTTTGCGGCGTTTTTCG
131 TAGTTTGCGGCGTTTTTCG
7429169 TAAAAACGCC
1 TAAAAACGCC
7429179 ACAAAAAATC
Statistics
Matches: 147, Mismatches: 11, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
148 46 0.31
149 101 0.69
ACGTcount: A:0.31, C:0.18, G:0.14, T:0.37
Consensus pattern (149 bp):
TAAAAACGCCGCTATTACTTACCTTTTCCGGCGTTTTTCATAAAAACACCACAAAAAATAATTTC
ATATTGAACAAAACGACGTCGTTTTGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTAT
TAGTTTGCGGCGTTTTTCG
Found at i:7429340 original size:108 final size:109
Alignment explanation
Indices: 7429044--7429504 Score: 825
Period size: 109 Copynumber: 4.2 Consensus size: 109
7429034 TTGCTTACCT
* * *
7429044 TTTGCGGGGTTTTTCATAAAAACACCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
*
7429109 TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAG
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
7429153 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
7429218 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
*
7429262 TTTGCGGCATTTTTCGT-AAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
*
7429326 TGTTATGCTAAAAATCCTTTATTTTATTTGCTAAAAATTATTAG
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
* * *
7429370 TTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTTATTTTGAACAAAACTACGTCGTTT
1 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
7429435 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
*
7429479 TTTGTGGCGTTTTTCGTAAAAACGCC
1 TTTGCGGCGTTTTTCGTAAAAACGCC
7429505 GCTATTGCTT
Statistics
Matches: 340, Mismatches: 11, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
108 107 0.31
109 233 0.69
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (109 bp):
TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
Found at i:7429443 original size:217 final size:218
Alignment explanation
Indices: 7429044--7429869 Score: 847
Period size: 217 Copynumber: 3.6 Consensus size: 218
7429034 TTGCTTACCT
** * *
7429044 TTTGCGGGGTTTTTCATAAAAACACCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
* *
7429109 TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCGTTTTTCGTAAAA
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAA
7429174 ACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTTTA
131 ACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTTTA
7429239 TTTTATCTGCTAAAAATTATTAG
196 TTTTATCTGCTAAAAATTATTAG
7429262 TTTGCGGCATTTTTCGT-AAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
*
7429326 TGTTATGCTAAAAATCCTTTATTTTATTTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAA
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAA
* *
7429391 ACGCCACAAAAAATCATTTTATTTTGAACAAAACTACGTCGTTTTGTTATGCTAAAAATCCTTTA
131 ACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTTTA
7429456 TTTTATCTGCTAAAAATTATTAG
196 TTTTATCTGCTAAAAATTATTAG
* * * **** * * * *
7429479 TTTGTGGCGTTTTTCGTAAAAACGCCGCTATTGCTTACCTTTTGCGGGGTTTTTCATA-AAAACG
1 TTTGCGGCATTTTTCGTAAAAACGCCAC-A--AAAAATCATTT-C----ATTTTGA-ACAAAACG
* * ** * * *
7429543 CCACAAAAAATCATTTCATTTTGAAC-AAAACGACGTCGTTT-TGTTA--TGCTAAAAAGCCTTT
57 --AC-----GTCGTTTTGTTATG--CTAAAA--A--TCCTTTATTTTATCTGCTAAAAA----TT
* *** ** *
7429604 ATTTTA-TCTGCTAAAAATTATTAGTTTGCGGCATTTTCGTAAAACGCCACAAAAAATCATTTCA
105 A--TTAGTTTGC-----GGCATT--TTT-C-G-----T-AAAAAC-GCCACAAAAAATCATTTCA
* *
7429668 TTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTTTATTTTATTTGCGAAAAATTATT
152 TTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATT
7429733 AG
217 AG
* *
7429735 TTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTTATTTTGAACAAAACTACGTCGTTT
1 TTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
* *
7429800 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTGTGGCGTTTTTCGTAAAA
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAA
7429865 ACGCC
131 ACGCC
7429870 GCTATTGCTT
Statistics
Matches: 490, Mismatches: 67, Indels: 102
0.74 0.10 0.15
Matches are distributed among these distances:
217 209 0.43
218 26 0.05
219 4 0.01
220 1 0.00
221 5 0.01
222 1 0.00
225 1 0.00
226 12 0.02
227 4 0.01
228 2 0.00
229 2 0.00
233 12 0.02
234 7 0.01
235 13 0.03
236 6 0.01
237 8 0.02
238 6 0.01
239 13 0.03
240 8 0.02
241 12 0.02
245 3 0.01
246 2 0.00
247 4 0.01
248 11 0.02
249 1 0.00
253 5 0.01
254 1 0.00
255 4 0.01
256 107 0.22
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (218 bp):
TTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAA
ACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTTTA
TTTTATCTGCTAAAAATTATTAG
Found at i:7429542 original size:149 final size:147
Alignment explanation
Indices: 7429370--7429651 Score: 474
Period size: 149 Copynumber: 1.9 Consensus size: 147
7429360 AAATTATTAG
* * *
7429370 TTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTTATTTTGAACAAAACTACGTCGTTT
1 TTTGCGGCATTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
* * *
7429435 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTGTGGCGTTTTTCGTAAAA
66 TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGC-ATTTTCGT-AAA
7429500 ACGCCGCTATTGCTTACCT
129 ACGCCGCTATTGCTTACCT
**
7429519 TTTGCGGGGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCATTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
7429584 TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTCGTAAAAC
66 TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTCGTAAAAC
7429649 GCC
131 GCC
7429652 ACAAAAAATC
Statistics
Matches: 125, Mismatches: 8, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
147 8 0.06
148 7 0.06
149 110 0.88
ACGTcount: A:0.30, C:0.17, G:0.14, T:0.38
Consensus pattern (147 bp):
TTTGCGGCATTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTCGTAAAAC
GCCGCTATTGCTTACCT
Found at i:7429811 original size:109 final size:109
Alignment explanation
Indices: 7429519--7429869 Score: 598
Period size: 109 Copynumber: 3.2 Consensus size: 109
7429509 TTGCTTACCT
** *
7429519 TTTGCGGGGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
*
7429584 TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAG
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
7429628 TTTGCGGCA-TTTTCGT-AAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
* *
7429691 TGTTATGCTAAAAATCCTTTATTTTATTTGCGAAAAATTATTAG
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
* *
7429735 TTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTTATTTTGAACAAAACTACGTCGTTT
1 TTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
7429800 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
66 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
* *
7429844 TTTGTGGCGTTTTTCGTAAAAACGCC
1 TTTGCGGCATTTTTCGTAAAAACGCC
7429870 GCTATTGCTT
Statistics
Matches: 228, Mismatches: 12, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
107 97 0.43
108 13 0.06
109 118 0.52
ACGTcount: A:0.33, C:0.16, G:0.13, T:0.38
Consensus pattern (109 bp):
TTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
Found at i:7429824 original size:365 final size:365
Alignment explanation
Indices: 7429153--7430129 Score: 1776
Period size: 365 Copynumber: 2.7 Consensus size: 365
7429143 AAATTATTAG
* *
7429153 TTTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGGGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
*
7429218 TGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAA
66 TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCA-TTTTCGTAAAA
7429283 CGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTTTAT
130 CGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTTTAT
7429348 TTTATTTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTTAT
195 TTTATTTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTTAT
7429413 TTTGAACAAAACTACGTCGTTTTGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTA
260 TTTGAACAAAACTACGTCGTTTTGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTA
*
7429478 GTTTGTGGCGTTTTTCGTAAAAACGCCGCTATTGCTTACCT
325 GTTTGTGGCGTTTTTCGTAAAAACGCCGCTATTGCTTACAT
7429519 TTTGCGGGGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
1 TTTGCGGGGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
7429584 TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTCGTAAAAC
66 TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTCGTAAAAC
7429649 GCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTTTATT
131 GCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTTTATT
*
7429714 TTATTTGCGAAAAATTATTAGTTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTTATT
196 TTATTTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTTATT
7429779 TTGAACAAAACTACGTCGTTTTGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
261 TTGAACAAAACTACGTCGTTTTGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
7429844 TTTGTGGCGTTTTTCGTAAAAACGCCGCTATTGCTTACAT
326 TTTGTGGCGTTTTTCGTAAAAACGCCGCTATTGCTTACAT
*
7429884 TTTGCGGGGTTTTTCATAAAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGATGTCGT
1 TTTGCGGGGTTTTTCAT--AAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGT
* * *
7429949 TTTGTTATTCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTCTGCGGCGTTTTTCGTAA
64 TTTGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGC-ATTTTCGT-A
*
7430014 AAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTTGTTTTGTTATGCTAAAAATCCTT
127 AAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTT
* * *
7430079 TATTTTATCTGTTAAAAATTATTAGTTTGCGGCGTTTTTACG-AAAAACGCC
192 TATTTTATTTGCTAAAAATTATTAGTTTGCGGCATTTTT-CGTAAAAACGCC
7430130 GCTATTGCTT
Statistics
Matches: 592, Mismatches: 14, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
365 262 0.44
366 115 0.19
367 97 0.16
368 7 0.01
369 109 0.18
370 2 0.00
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.38
Consensus pattern (365 bp):
TTTGCGGGGTTTTTCATAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTT
TGTTATGCTAAAAAGCCTTTATTTTATCTGCTAAAAATTATTAGTTTGCGGCATTTTCGTAAAAC
GCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTTTATT
TTATTTGCTAAAAATTATTAGTTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATTTTATT
TTGAACAAAACTACGTCGTTTTGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATTATTAG
TTTGTGGCGTTTTTCGTAAAAACGCCGCTATTGCTTACAT
Found at i:7429973 original size:260 final size:258
Alignment explanation
Indices: 7429644--7430239 Score: 1014
Period size: 260 Copynumber: 2.3 Consensus size: 258
7429634 GCATTTTCGT
7429644 AAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCT
1 AAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCT
* *
7429709 TTATTTTATTTGCGAAAAATTATTAGTTTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATT
66 TTATTTTATCTGCGAAAAATTATTAGTCTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATT
* *
7429774 TTATTTTGAACAAAACTACGTCGTTTTGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATT
131 TCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATT
* * *
7429839 ATTAGTTTGTGGCGTTTTT-CGTAAAAACGCCGCTATTGCTTACATTTTGCGGGGTTTTTCATAA
196 ATTAGTTTGCGGCGTTTTTACG-AAAAACGCCGCTATTGCTTACATTTTGCAGCGTTTTTCAT--
7429903 A
258 A
* * *
7429904 AAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGATGTCGTTTTGTTATTCTAAAAAGCCT
1 AAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCT
* *
7429969 TTATTTTATCTGCTAAAAATTATTAGTCTGCGGCGTTTTTCGTAAAAACGCCACAAAAAATCATT
66 TTATTTTATCTGCGAAAAATTATTAGTCTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATT
* *
7430034 TCATTTTGAACAAAACGACGTTGTTTTGTTATGCTAAAAATCCTTTATTTTATCTGTTAAAAATT
131 TCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATT
*
7430099 ATTAGTTTGCGGCGTTTTTACGAAAAACGCCGCTATTGCTTACCTTTTGCAGCGTTTTTCATA
196 ATTAGTTTGCGGCGTTTTTACGAAAAACGCCGCTATTGCTTACATTTTGCAGCGTTTTTCATA
*
7430162 AAAATGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCT
1 AAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCT
7430227 TTATTTTATCTGC
66 TTATTTTATCTGC
7430240 TTAAATGAAA
Statistics
Matches: 316, Mismatches: 19, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
258 75 0.24
260 239 0.76
261 2 0.01
ACGTcount: A:0.33, C:0.17, G:0.13, T:0.38
Consensus pattern (258 bp):
AAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCT
TTATTTTATCTGCGAAAAATTATTAGTCTGCGGCATTTTTCGTAAAAACGCCACAAAAAATCATT
TCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAATCCTTTATTTTATCTGCTAAAAATT
ATTAGTTTGCGGCGTTTTTACGAAAAACGCCGCTATTGCTTACATTTTGCAGCGTTTTTCATA
Found at i:7430079 original size:109 final size:109
Alignment explanation
Indices: 7429903--7430129 Score: 384
Period size: 109 Copynumber: 2.1 Consensus size: 109
7429893 TTTTTCATAA
* *
7429903 AAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGATGTCGTTTTGTTATTCTAAAAAGCC
1 AAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAAGCC
7429968 TTTATTTTATCTGCTAAAAATTATTAGTCTGCGGCGTTTTT-CG
66 TTTATTTTATCTGCTAAAAATTATTAGTCTGCGGCGTTTTTACG
* *
7430011 TAAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTTGTTTTGTTATGCTAAAAATC
1 -AAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAAGC
* *
7430076 CTTTATTTTATCTGTTAAAAATTATTAGTTTGCGGCGTTTTTACG
65 CTTTATTTTATCTGCTAAAAATTATTAGTCTGCGGCGTTTTTACG
7430121 AAAAACGCC
1 AAAAACGCC
7430130 GCTATTGCTT
Statistics
Matches: 111, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
109 109 0.98
110 2 0.02
ACGTcount: A:0.34, C:0.16, G:0.13, T:0.37
Consensus pattern (109 bp):
AAAAACGCCACAAAAAATCATTTCATTTTGAACAAAACGACGTCGTTTTGTTATGCTAAAAAGCC
TTTATTTTATCTGCTAAAAATTATTAGTCTGCGGCGTTTTTACG
Found at i:7433310 original size:42 final size:42
Alignment explanation
Indices: 7433207--7433403 Score: 234
Period size: 43 Copynumber: 4.6 Consensus size: 42
7433197 TCTCTAAACA
* *
7433207 CGCCGCTAAAGGTCTTGTTCTTTAGCAGCGTTTTCGGGGAAAG
1 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTT-TGGGAAAG
* * *
7433250 TGCTGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTGGGGAAG
1 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTGGGAAAG
* * * **
7433292 CGCTGCTAAAGGTCTTGTTCTTTAACGGCATTTTTATAGAAAG
1 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTT-GGGAAAG
* *
7433335 CGCCGTTAAAGTTCTTGTTCTTTAGCGGCGTTTTTGGGAAAG
1 CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTGGGAAAG
* *
7433377 CGCCGCTAGAA-GTCATGATCTTTAGCG
1 CGCCGCTA-AAGGTCTTGTTCTTTAGCG
7433404 ATGCTTATTT
Statistics
Matches: 130, Mismatches: 22, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
42 63 0.48
43 67 0.52
ACGTcount: A:0.19, C:0.18, G:0.28, T:0.35
Consensus pattern (42 bp):
CGCCGCTAAAGGTCTTGTTCTTTAGCGGCGTTTTTGGGAAAG
Found at i:7433354 original size:85 final size:85
Alignment explanation
Indices: 7433207--7433384 Score: 239
Period size: 85 Copynumber: 2.1 Consensus size: 85
7433197 TCTCTAAACA
* * * * * *
7433207 CGCCGCTAAAGGTCTTGTTCTTTAGCAGCGTTTTCGGGGAAAGTGCTGCTAAAGGTCTTGTTCTT
1 CGCCGCTAAAGGTCTTGTTCTTTAACAGCATTTTCAGAGAAAGCGCCGCTAAAGGTCTTGTTCTT
*
7433272 TAGCGGCGTTTTTGGGGAAG
66 TAGCGGCGTTTTTGGGAAAG
* * * * * *
7433292 CGCTGCTAAAGGTCTTGTTCTTTAACGGCATTTTTATAGAAAGCGCCGTTAAAGTTCTTGTTCTT
1 CGCCGCTAAAGGTCTTGTTCTTTAACAGCATTTTCAGAGAAAGCGCCGCTAAAGGTCTTGTTCTT
7433357 TAGCGGCGTTTTTGGGAAAG
66 TAGCGGCGTTTTTGGGAAAG
7433377 CGCCGCTA
1 CGCCGCTA
7433385 GAAGTCATGA
Statistics
Matches: 79, Mismatches: 14, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
85 79 1.00
ACGTcount: A:0.19, C:0.19, G:0.28, T:0.35
Consensus pattern (85 bp):
CGCCGCTAAAGGTCTTGTTCTTTAACAGCATTTTCAGAGAAAGCGCCGCTAAAGGTCTTGTTCTT
TAGCGGCGTTTTTGGGAAAG
Found at i:7459071 original size:15 final size:15
Alignment explanation
Indices: 7459033--7459082 Score: 50
Period size: 15 Copynumber: 3.4 Consensus size: 15
7459023 ATTATGTTAA
*
7459033 ATATA-TTTTACTTT
1 ATATATTTTTTCTTT
* *
7459047 AAATTATTTTTT-TTG
1 ATA-TATTTTTTCTTT
7459062 ATATATTTTTTCTTT
1 ATATATTTTTTCTTT
7459077 ATATAT
1 ATATAT
7459083 AATTGTTTAT
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
14 10 0.36
15 14 0.50
16 4 0.14
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.66
Consensus pattern (15 bp):
ATATATTTTTTCTTT
Done.