Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 29 of 173
Found at i:7719834 original size:104 final size:104
Alignment explanation
Indices: 7719654--7719860 Score: 380
Period size: 104 Copynumber: 2.0 Consensus size: 104
7719644 ATAAGCAAGG
7719654 ATTAAATTTATAAATACTTCAATTAATGTAATAATAGTATACTTTCAGTTAATCTTCACGAAACA
1 ATTAAATTTATAAATACTTCAATTAATGTAATAATAGTATACTTTCAGTTAATCTTCACGAAACA
* *
7719719 TTTTCAAGATACTTCTTTTTATTTATATACTTTTTTTTT
66 TTTTCAAGATACGTCTTTTTACTTATATACTTTTTTTTT
7719758 ATTAAATTTATAAATACTTCAATTAATGTAATAATAGTATACTTTCAGTTAATCTTCAC-ATAAC
1 ATTAAATTTATAAATACTTCAATTAATGTAATAATAGTATACTTTCAGTTAATCTTCACGA-AAC
7719822 ATTTTCAAGATACGTCTTTTTACTTATATACTTTTTTTT
65 ATTTTCAAGATACGTCTTTTTACTTATATACTTTTTTTT
7719861 ATGAGAAAAG
Statistics
Matches: 100, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
103 1 0.01
104 99 0.99
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.48
Consensus pattern (104 bp):
ATTAAATTTATAAATACTTCAATTAATGTAATAATAGTATACTTTCAGTTAATCTTCACGAAACA
TTTTCAAGATACGTCTTTTTACTTATATACTTTTTTTTT
Found at i:7727887 original size:24 final size:23
Alignment explanation
Indices: 7727843--7727887 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
7727833 TGCTGCCAAG
*
7727843 ACTGACTTTGAAAACACAAAAAA
1 ACTGACTTTGAAAAAACAAAAAA
*
7727866 ACTGACTTTGAAAAAACTAAAA
1 ACTGACTTTGAAAAAACAAAAA
7727888 CATAAACAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.56, C:0.16, G:0.09, T:0.20
Consensus pattern (23 bp):
ACTGACTTTGAAAAAACAAAAAA
Found at i:7731280 original size:14 final size:16
Alignment explanation
Indices: 7731240--7731283 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
7731230 TTTTCAACAT
*
7731240 AAATTAAACTGAATTCA
1 AAATTAAA-TAAATTCA
7731257 AAATTAAATAAATT-A
1 AAATTAAATAAATTCA
7731272 AAA-TAAATAAAT
1 AAATTAAATAAAT
7731284 ATGGGTTGCC
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 9 0.35
15 4 0.15
16 5 0.19
17 8 0.31
ACGTcount: A:0.64, C:0.05, G:0.02, T:0.30
Consensus pattern (16 bp):
AAATTAAATAAATTCA
Found at i:7734688 original size:21 final size:21
Alignment explanation
Indices: 7734649--7734692 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
7734639 TTTACTTAGG
*
7734649 ATGTGAATTGTATGGAATTGA
1 ATGTGAATTGTATGAAATTGA
* *
7734670 ATGTGAATTGTGTTAAATTGA
1 ATGTGAATTGTATGAAATTGA
7734691 AT
1 AT
7734693 TAAATTTACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.34, C:0.00, G:0.25, T:0.41
Consensus pattern (21 bp):
ATGTGAATTGTATGAAATTGA
Found at i:7735203 original size:25 final size:24
Alignment explanation
Indices: 7735169--7735221 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 24
7735159 ACATACCGCA
7735169 GCTCTTTATGAGCATT-CTGATATAG
1 GCTCTTTATGAGC-TTCCTGATAT-G
7735194 GCTCTTTATGAGCTTCCTGATATG
1 GCTCTTTATGAGCTTCCTGATATG
7735218 GCTC
1 GCTC
7735222 GCTTGAACTT
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
24 7 0.26
25 20 0.74
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (24 bp):
GCTCTTTATGAGCTTCCTGATATG
Found at i:7737720 original size:29 final size:30
Alignment explanation
Indices: 7737687--7737751 Score: 105
Period size: 30 Copynumber: 2.2 Consensus size: 30
7737677 AAATAATTTG
* *
7737687 ATCTTTATCCAGCC-AATTTCAAATCTTTA
1 ATCTTTATCCAGCCAAACTTCAAATCTTCA
7737716 ATCTTTATCCAGCCAAACTTCAAATCTTCA
1 ATCTTTATCCAGCCAAACTTCAAATCTTCA
7737746 ATCTTT
1 ATCTTT
7737752 CAATCTATTC
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
29 14 0.42
30 19 0.58
ACGTcount: A:0.31, C:0.26, G:0.03, T:0.40
Consensus pattern (30 bp):
ATCTTTATCCAGCCAAACTTCAAATCTTCA
Found at i:7738304 original size:114 final size:113
Alignment explanation
Indices: 7738136--7738387 Score: 346
Period size: 114 Copynumber: 2.2 Consensus size: 113
7738126 AAAATAAGCA
* * *
7738136 TTAGCGGCGTTTTTGAGAAAGCGCCACAAAAACCCTAAGCCCAACGACGTCGTTTCT-CGAGCTT
1 TTAGCGGCGTTTTTGAGAAAACGCCACAAAAAACCTAAGCCCAACGACGCCGTTT-TACGAGCTT
** *
7738200 TCGGGGATTTAACGGCGTTTCTAAGAAAGCGCCGCTAATGCTCCGGGCT
65 TCGGGGATTTAACGGCGTTTAAAAGAAAGCGCCGCTAATGCTCAGGGCT
* *
7738249 TTAGCGGCGTTTTTGCA-AAAATGCCACAAAAAAACCTAAGCCCAACGACGCCGTTTTATGAGCT
1 TTAGCGGCGTTTTTG-AGAAAACGCCAC-AAAAAACCTAAGCCCAACGACGCCGTTTTACGAGCT
** *
7738313 TTCGGGGATTTAGTGGCGTTTAAAAGGAAGCGCCGCTAATGCTCAGGGCT
64 TTCGGGGATTTAACGGCGTTTAAAAGAAAGCGCCGCTAATGCTCAGGGCT
* *
7738363 TTAGCGGCGTTTTTGGGAAAGCGCC
1 TTAGCGGCGTTTTTGAGAAAACGCC
7738388 GCTAATGCTC
Statistics
Matches: 121, Mismatches: 14, Indels: 7
0.85 0.10 0.05
Matches are distributed among these distances:
113 24 0.20
114 97 0.80
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.25
Consensus pattern (113 bp):
TTAGCGGCGTTTTTGAGAAAACGCCACAAAAAACCTAAGCCCAACGACGCCGTTTTACGAGCTTT
CGGGGATTTAACGGCGTTTAAAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:7738385 original size:41 final size:41
Alignment explanation
Indices: 7738340--7738430 Score: 173
Period size: 41 Copynumber: 2.2 Consensus size: 41
7738330 GTTTAAAAGG
*
7738340 AAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTGGGA
1 AAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGGGA
7738381 AAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGGGA
1 AAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGGGA
7738422 AAGCGCCGC
1 AAGCGCCGC
7738431 AAAAAAACCT
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 49 1.00
ACGTcount: A:0.19, C:0.24, G:0.33, T:0.24
Consensus pattern (41 bp):
AAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGGGA
Found at i:7738435 original size:155 final size:154
Alignment explanation
Indices: 7738224--7738543 Score: 496
Period size: 155 Copynumber: 2.1 Consensus size: 154
7738214 GCGTTTCTAA
* * *
7738224 GAAAGCGCCGCTAATGCTCCGGGCTTTAGCGGCGTTTTTGCAAAAATGCCACAAAAAAACCTAAG
1 GAAAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGCAAAAACGCCACAAAAAAACCTAAG
* * *
7738289 CCCAACGACGCCGTTTTATGAGCTTTCGGGGATTTAGTGGCGTTTAAAAGGAAGCGCCGCTAATG
66 CCCAACGACGCCGTTTTATGAGCTTT-AGGGATTTAGCGGCGTTTAAAAGAAAGCGCCGCTAATG
7738354 CTCAGGGCTTTAGCGGCGTTTTTGG
130 CTCAGGGCTTTAGCGGCGTTTTTGG
** * *
7738379 GAAAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAAACCTAAG
1 GAAAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGCAAAAACGCCACAAAAAAACCTAAG
* * **
7738444 CCCCACGACGCCGTTTTCTGAGCTTTAGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGC
66 CCCAACGACGCCGTTTTATGAGCTTTAGGGATTTAGCGGCGTTTAAAAGAAAGCGCCGCTAATGC
7738509 TCAGGGCTTTAGCGGCGTTTTTGG
131 TCAGGGCTTTAGCGGCGTTTTTGG
*
7738533 AAAAGCGCCGC
1 GAAAGCGCCGC
7738544 AAAAAAACCT
Statistics
Matches: 150, Mismatches: 15, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
154 68 0.45
155 82 0.55
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (154 bp):
GAAAGCGCCGCTAATGCTCAGAGCTTTAGCGGCGTTTTTGCAAAAACGCCACAAAAAAACCTAAG
CCCAACGACGCCGTTTTATGAGCTTTAGGGATTTAGCGGCGTTTAAAAGAAAGCGCCGCTAATGC
TCAGGGCTTTAGCGGCGTTTTTGG
Found at i:7738865 original size:15 final size:15
Alignment explanation
Indices: 7738845--7738875 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7738835 CATATTTTAA
7738845 GGTTTAGGGAGTATG
1 GGTTTAGGGAGTATG
*
7738860 GGTTTAGGGATTATG
1 GGTTTAGGGAGTATG
7738875 G
1 G
7738876 ATTAGGGGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.45, T:0.35
Consensus pattern (15 bp):
GGTTTAGGGAGTATG
Found at i:7738888 original size:21 final size:22
Alignment explanation
Indices: 7738863--7738908 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
7738853 GAGTATGGGT
*
7738863 TTAGGGA-TTATGGATTAGGGG
1 TTAGGGATTTAAGGATTAGGGG
*
7738884 TTA-GGATTTAAGGTTTAGGGG
1 TTAGGGATTTAAGGATTAGGGG
7738905 TTAG
1 TTAG
7738909 AGGGTTAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
20 3 0.14
21 18 0.86
ACGTcount: A:0.24, C:0.00, G:0.39, T:0.37
Consensus pattern (22 bp):
TTAGGGATTTAAGGATTAGGGG
Found at i:7739150 original size:14 final size:14
Alignment explanation
Indices: 7739116--7739219 Score: 55
Period size: 14 Copynumber: 7.1 Consensus size: 14
7739106 ATTTTAAGGT
* *
7739116 TTAGGGAGTATGGGT
1 TTAGGGATTA-GGGG
7739131 TTAGGGATTAGGGG
1 TTAGGGATTAGGGG
* **
7739145 TTAGGGGTTAGGTT
1 TTAGGGATTAGGGG
* *
7739159 TTAAGGTTTAGGGG
1 TTAGGGATTAGGGG
* *
7739173 TTAGAGGGTTATGAGGT
1 TTAG-GGATTA-G-GGG
***
7739190 TTAGGGATTAAAAG
1 TTAGGGATTAGGGG
7739204 TTAGGGATTTAGGGG
1 TTAGGGA-TTAGGGG
7739219 T
1 T
7739220 CGAGTTAGGG
Statistics
Matches: 65, Mismatches: 20, Indels: 8
0.70 0.22 0.09
Matches are distributed among these distances:
14 34 0.52
15 19 0.29
16 6 0.09
17 6 0.09
ACGTcount: A:0.23, C:0.00, G:0.42, T:0.35
Consensus pattern (14 bp):
TTAGGGATTAGGGG
Found at i:7739176 original size:7 final size:7
Alignment explanation
Indices: 7739131--7739183 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 7
7739121 GAGTATGGGT
*
7739131 TTAGGGA
1 TTAGGGG
7739138 TTAGGGG
1 TTAGGGG
7739145 TTAGGGG
1 TTAGGGG
**
7739152 TTAGGTT
1 TTAGGGG
* *
7739159 TTAAGGT
1 TTAGGGG
7739166 TTAGGGG
1 TTAGGGG
7739173 TTAGAGGG
1 TTAG-GGG
7739181 TTA
1 TTA
7739184 TGAGGTTTAG
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
7 32 0.84
8 6 0.16
ACGTcount: A:0.21, C:0.00, G:0.43, T:0.36
Consensus pattern (7 bp):
TTAGGGG
Found at i:7739382 original size:268 final size:268
Alignment explanation
Indices: 7738745--7739432 Score: 1182
Period size: 268 Copynumber: 2.6 Consensus size: 268
7738735 ATTATTTAAA
* * *
7738745 ATAATTGTAAATGAGATAATAATAAATTTGTTTAGGGTTTTTGGTTTAGGGTATATGATTTATTT
1 ATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTT
* * *
7738810 AAGATTTAAGGCCGGTTTAGGAGTTCATATTTTAAGGTTTAGGGAGTATGGGTTTAGGGATTATG
66 AAGATTTAAAGCCGATTTAGGAGTTCATATTTTAAGGTTTAGGGAGTATGGGTTTAGGGATTAGG
*
7738875 GATTAGGGGTTAGGATTTAAGGTTTAGGGGTTAGAGGGTTAGGGGTTTAGGGATTAAAAGTTAGG
131 GATTAGGGGTTAGGATTTAAGGTTTAGGGGTTAGAGGGTTAGAGGTTTAGGGATTAAAAGTTAGG
7738940 GATTCAGGGGTCGAGTTAAGGTTTTGGGTTTAGATTAATTATTTTTTAATTTATATTTTAAATAT
196 GATTCAGGGGTCGAGTTAAGGTTTTGGGTTTAGATTAATTATTTTTTAATTTATATTTTAAATAT
7739005 GTTCTTAT
261 GTTCTTAT
*
7739013 ATAATTGTAAAATAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTT
1 ATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTT
7739078 AAGATTTAAAGCCGATTTAGGAGTTCATATTTTAAGGTTTAGGGAGTATGGGTTTAGGGATTAGG
66 AAGATTTAAAGCCGATTTAGGAGTTCATATTTTAAGGTTTAGGGAGTATGGGTTTAGGGATTAGG
* *
7739143 GGTTAGGGGTTAGGTTTTAAGGTTTAGGGGTTAGAGGGTTATGAGGTTTAGGGATTAAAAGTTAG
131 GATTAGGGGTTAGGATTTAAGGTTTAGGGGTTAGAGGGTTA-GAGGTTTAGGGATTAAAAGTTAG
* *
7739208 GGATTTAGGGGTCGAGTTAGGGTTTTGGGTTTAGATTAATTATTTTTTAATTTATATTTTAAATA
195 GGATTCAGGGGTCGAGTTAAGGTTTTGGGTTTAGATTAATTATTTTTTAATTTATATTTTAAATA
7739273 TGTTCTTAT
260 TGTTCTTAT
*
7739282 ATAATTGTAAAAGAGATAATAATAATTTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTT
1 ATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTT
* * *
7739347 TAGATTTAAAGCCGATTTAGGAGTTCATA-TTTAAGGTTTAGGGAGTATGGATTTAGGGATTATG
66 AAGATTTAAAGCCGATTTAGGAGTTCATATTTTAAGGTTTAGGGAGTATGGGTTTAGGGATTAGG
* *
7739411 AATTAGGGATTATGG-TTTAAGG
131 GATTAGGGGTTA-GGATTTAAGG
7739433 GTTGGGATTT
Statistics
Matches: 398, Mismatches: 20, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
268 211 0.53
269 187 0.47
ACGTcount: A:0.29, C:0.02, G:0.27, T:0.42
Consensus pattern (268 bp):
ATAATTGTAAAAGAGATAATAATAAATTTGTTTAGGGTTTTTAGTTTAGGGTATATGATTAATTT
AAGATTTAAAGCCGATTTAGGAGTTCATATTTTAAGGTTTAGGGAGTATGGGTTTAGGGATTAGG
GATTAGGGGTTAGGATTTAAGGTTTAGGGGTTAGAGGGTTAGAGGTTTAGGGATTAAAAGTTAGG
GATTCAGGGGTCGAGTTAAGGTTTTGGGTTTAGATTAATTATTTTTTAATTTATATTTTAAATAT
GTTCTTAT
Found at i:7739403 original size:15 final size:15
Alignment explanation
Indices: 7739383--7739429 Score: 62
Period size: 14 Copynumber: 3.3 Consensus size: 15
7739373 ATATTTAAGG
*
7739383 TTTAGGGAGTATGGA
1 TTTAGGGATTATGGA
7739398 TTTAGGGATTAT-GA
1 TTTAGGGATTATGGA
*
7739412 ATTAGGGATTATGG-
1 TTTAGGGATTATGGA
7739426 TTTA
1 TTTA
7739430 AGGGTTGGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.28, C:0.00, G:0.32, T:0.40
Consensus pattern (15 bp):
TTTAGGGATTATGGA
Found at i:7739462 original size:15 final size:15
Alignment explanation
Indices: 7739444--7739511 Score: 63
Period size: 15 Copynumber: 4.7 Consensus size: 15
7739434 TTGGGATTTA
*
7739444 AGGTTTTGGGGTTAG
1 AGGTTTAGGGGTTAG
7739459 AGGTTTAGGGGTTAG
1 AGGTTTAGGGGTTAG
*
7739474 ATG-TTAGGGGTTA-
1 AGGTTTAGGGGTTAG
*
7739487 AGAG-TTAGGGATTTA-
1 AG-GTTTAGGG-GTTAG
7739502 AGGTTTAGGG
1 AGGTTTAGGG
7739512 ATTCAGGGGT
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
13 1 0.02
14 18 0.39
15 27 0.59
ACGTcount: A:0.22, C:0.00, G:0.43, T:0.35
Consensus pattern (15 bp):
AGGTTTAGGGGTTAG
Found at i:7739514 original size:15 final size:14
Alignment explanation
Indices: 7739424--7739511 Score: 56
Period size: 14 Copynumber: 6.1 Consensus size: 14
7739414 TAGGGATTAT
*
7739424 GGTTTAAGGGTT-G
1 GGTTTAAGGTTTAG
*
7739437 GGATTTAAGGTTTTG
1 GG-TTTAAGGTTTAG
*
7739452 GGGTTAGAGGTTTAG
1 GGTTTA-AGGTTTAG
* *
7739467 GGGTT-AGATGTTAG
1 GGTTTAAGGT-TTAG
*
7739481 GGGTTAAGAG-TTAG
1 GGTTTAAG-GTTTAG
7739495 GGATTTAAGGTTTAG
1 GG-TTTAAGGTTTAG
7739510 GG
1 GG
7739512 ATTCAGGGGT
Statistics
Matches: 61, Mismatches: 6, Indels: 14
0.75 0.07 0.17
Matches are distributed among these distances:
13 5 0.08
14 28 0.46
15 28 0.46
ACGTcount: A:0.22, C:0.00, G:0.42, T:0.36
Consensus pattern (14 bp):
GGTTTAAGGTTTAG
Found at i:7740139 original size:148 final size:148
Alignment explanation
Indices: 7739886--7740330 Score: 793
Period size: 148 Copynumber: 3.0 Consensus size: 148
7739876 TTCAAAATGA
* *
7739886 AATAGCAGCGTTTTCTATAAAAACGCCGCAAAGAATAAATCAATTTATTAAAACAAT-AAAAAAA
1 AATAGCGGCGTTTTCTATAAAAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAA
* *
7739950 TTTTAGAACAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCATTTTATAAGAA
66 TTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGTTTTATAAGAA
7740015 GCGCCGCTAAAGGTAAGC
131 GCGCCGCTAAAGGTAAGC
* *
7740033 AATAGCGGCGTTTTCTATAAAAACACCGCAAAGAATAAATCAATTTATAAAAAAAATAAAAAAAA
1 AATAGCGGCGTTTTCTATAAAAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAA
7740098 TTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGTTTTATAAGAA
66 TTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGTTTTATAAGAA
7740163 GCGCCGCTAAAGGTAAGC
131 GCGCCGCTAAAGGTAAGC
7740181 AATAGCGGCGTTTTCTATAAAAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAA
1 AATAGCGGCGTTTTCTATAAAAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAA
** *
7740246 AATTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGTTTTATAAGAA
66 TTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGTTTTATAAGAA
*
7740311 GTGCCGCTAAAGGTAAGC
131 GCGCCGCTAAAGGTAAGC
7740329 AA
1 AA
7740331 ACGCCGCAAA
Statistics
Matches: 285, Mismatches: 12, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
147 53 0.19
148 232 0.81
ACGTcount: A:0.44, C:0.14, G:0.17, T:0.25
Consensus pattern (148 bp):
AATAGCGGCGTTTTCTATAAAAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAA
TTTTAGAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGTTTTATAAGAA
GCGCCGCTAAAGGTAAGC
Found at i:7740428 original size:127 final size:127
Alignment explanation
Indices: 7740201--7740598 Score: 512
Period size: 141 Copynumber: 3.0 Consensus size: 127
7740191 TTTTCTATAA
*
7740201 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAAAATTAGAATAGCAAAACGGC
1 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAAT-AAAAAAAATTTAGAATAGCAAAACGGC
*
7740266 GTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGTTTTATAAGAAGTGCCGCTAAAGGTAAGC
65 GTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGTTTTATAAGAAGCGCCGCTAAAGGTAAGC
7740329 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCG
1 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCG
* *
7740394 TCATTTTGTTCAAAATGAAAAAAATTTGCGGCGTTTTATAAAAAGCGCCGCTAAAGGTAAGC
66 TCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGTTTTATAAGAAGCGCCGCTAAAGGTAAGC
* * * *** * *
7740456 AATAGCGGCGTTTTC-CAGAA-AAACGCCGAAAAGAATAAATCAATTTATTAAAAAAAAAATTTA
1 AA-A-CGCCG----CAAAGAATAAA--TC-AATTTATTAAA--AA---A--ATAAAAAAAATTTA
*
7740519 GAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGTTTTATAAGAAGCGCC
50 GAATAGCAAAACGGCGTCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGTTTTATAAGAAGCGCC
7740584 GCTAAAGGTAAGC
115 GCTAAAGGTAAGC
7740597 AA
1 AA
7740599 TAGTGGCGTT
Statistics
Matches: 239, Mismatches: 15, Indels: 19
0.88 0.05 0.07
Matches are distributed among these distances:
127 88 0.37
128 38 0.16
129 4 0.02
131 3 0.01
132 4 0.02
133 2 0.01
134 7 0.03
136 2 0.01
139 1 0.00
141 90 0.38
ACGTcount: A:0.45, C:0.13, G:0.17, T:0.24
Consensus pattern (127 bp):
AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCG
TCGTTTTGTTCAAAATGAAAAAAATTTGCGGCGTTTTATAAGAAGCGCCGCTAAAGGTAAGC
Found at i:7740736 original size:147 final size:147
Alignment explanation
Indices: 7740329--7740864 Score: 834
Period size: 147 Copynumber: 3.7 Consensus size: 147
7740319 AAAGGTAAGC
7740329 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCG
1 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCG
* * * *
7740394 TCATTTTGTTCAAAATGAAAAAAATTTGCGGCGTTTTATAAAAAGCGCCGCTAAAGGTAAGCAAT
66 TCGTTTTGTTCAAAATGAAAAAATTTTACGGCGTTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
7740459 AGCGGCGTTTTCCAGAA
131 AGCGGCGTTTTCCAGAA
*
7740476 AAACGCCGAAAAGAATAAATCAATTTATT-----AA-AAAAAAAATTTAGAATAGCAAAACGGCG
1 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCG
*
7740535 TCGTTTTGTTCAAAATGAAAAAATTTTGCGGCGTTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
66 TCGTTTTGTTCAAAATGAAAAAATTTTACGGCGTTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
*
7740600 AGTGGCGTTTTCCAGAA
131 AGCGGCGTTTTCCAGAA
*
7740617 AAACGCCGCAAAGAATAAATCAATTTTTTAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCG
1 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCG
* * * * *
7740682 TCGTTTCGTTTAAAATGAAAAAATTTTACAGCGTTTTTTAAGAAGCGCCACTAAAGGTAAGCAAT
66 TCGTTTTGTTCAAAATGAAAAAATTTTACGGCGTTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
* *
7740747 AGCGGCGTTTTCTATAA
131 AGCGGCGTTTTCCAGAA
* * * *
7740764 AAACGCCGCAAAGAATAAATCAATTTA-TAAAAAAATAAAAAAATTTTAGAATAACAAAATGACG
1 AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCG
* *
7740828 TGGTTTTGTTCAAAATGAAAAAATTTTACGACGTTTT
66 TCGTTTTGTTCAAAATGAAAAAATTTTACGGCGTTTT
7740865 TGCTATAAAT
Statistics
Matches: 357, Mismatches: 26, Indels: 13
0.90 0.07 0.03
Matches are distributed among these distances:
141 133 0.37
142 2 0.01
146 67 0.19
147 155 0.43
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (147 bp):
AAACGCCGCAAAGAATAAATCAATTTATTAAAAAAATAAAAAAAATTTAGAATAGCAAAACGGCG
TCGTTTTGTTCAAAATGAAAAAATTTTACGGCGTTTTATAAGAAGCGCCGCTAAAGGTAAGCAAT
AGCGGCGTTTTCCAGAA
Found at i:7743253 original size:23 final size:23
Alignment explanation
Indices: 7743223--7743502 Score: 161
Period size: 23 Copynumber: 12.3 Consensus size: 23
7743213 GAAATTTGAT
7743223 AGTGCTGCAAATTGAAGTGTTTA
1 AGTGCTGCAAATTGAAGTGTTTA
*
7743246 AGTGCTGCAAATTGAAGTATTT-
1 AGTGCTGCAAATTGAAGTGTTTA
* * *
7743268 AGTTGCTGGAAACTG-AGATGTTTT
1 AG-TGCTGCAAATTGAAG-TGTTTA
* * *
7743292 A-TCGCTG-TAATTGAGGTGTATA
1 AGT-GCTGCAAATTGAAGTGTTTA
* * **
7743314 AATGTTGTTAATTGATA-TGTTTA
1 AGTGCTGCAAATTGA-AGTGTTTA
*
7743337 AGTGCTGCAAATTGAAGTATTT-
1 AGTGCTGCAAATTGAAGTGTTTA
* *
7743359 AGTTGCTGGAAATTG-AGATGTTTT
1 AG-TGCTGCAAATTGAAG-TGTTTA
* * * *
7743383 A-TCGTTG-TAATTGAGGTGTATA
1 AGT-GCTGCAAATTGAAGTGTTTA
* * **
7743405 AATGTTGTTAATTGATA-TGTTTA
1 AGTGCTGCAAATTGA-AGTGTTTA
7743428 AGTGCTGCAAATTGAAGTGTTTA
1 AGTGCTGCAAATTGAAGTGTTTA
*
7743451 AGTGCTGCAAATTG-AGATGTTTT
1 AGTGCTGCAAATTGAAG-TGTTTA
* *
7743474 A-TCGCTGTAAATTGAAGTGTTAA
1 AGT-GCTGCAAATTGAAGTGTTTA
7743497 AGTGCT
1 AGTGCT
7743503 ACTTTCCATT
Statistics
Matches: 201, Mismatches: 34, Indels: 44
0.72 0.12 0.16
Matches are distributed among these distances:
22 41 0.20
23 155 0.77
24 5 0.02
ACGTcount: A:0.29, C:0.07, G:0.25, T:0.40
Consensus pattern (23 bp):
AGTGCTGCAAATTGAAGTGTTTA
Found at i:7743392 original size:91 final size:91
Alignment explanation
Indices: 7743232--7743497 Score: 439
Period size: 91 Copynumber: 2.9 Consensus size: 91
7743222 TAGTGCTGCA
*
7743232 AATTGA-AGTGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAACTGAGATGTTTTATCG
1 AATTGATA-TGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCG
7743296 CTGTAATTGAGGTGTATAAATGTTGTT
65 CTGTAATTGAGGTGTATAAATGTTGTT
*
7743323 AATTGATATGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCGT
1 AATTGATATGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCGC
7743388 TGTAATTGAGGTGTATAAATGTTGTT
66 TGTAATTGAGGTGTATAAATGTTGTT
* *
7743414 AATTGATATGTTTAAGTGCTGCAAATTGAAGTGTTTAAG-TGCTGCAAATTGAGATGTTTTATCG
1 AATTGATATGTTTAAGTGCTGCAAATTGAAGTATTT-AGTTGCTGGAAATTGAGATGTTTTATCG
*
7743478 CTGTAAATTGAAGTGT-TAAA
65 CTGT-AATTGAGGTGTATAAA
7743498 GTGCTACTTT
Statistics
Matches: 166, Mismatches: 6, Indels: 6
0.93 0.03 0.03
Matches are distributed among these distances:
91 153 0.92
92 13 0.08
ACGTcount: A:0.30, C:0.06, G:0.24, T:0.40
Consensus pattern (91 bp):
AATTGATATGTTTAAGTGCTGCAAATTGAAGTATTTAGTTGCTGGAAATTGAGATGTTTTATCGC
TGTAATTGAGGTGTATAAATGTTGTT
Found at i:7744503 original size:43 final size:43
Alignment explanation
Indices: 7744413--7744642 Score: 293
Period size: 43 Copynumber: 5.3 Consensus size: 43
7744403 GTTTTTGGAG
* * * * * * *
7744413 AAAGTGCCACTAAAGGTCTTGTTTTTTTAGCGGCGCTTCAGGAA
1 AAAGCGCCGCTAAAGGTCTTG-GTCTTTAGCGGCGTTTGAGGGA
*
7744457 AAAGCGCCGCTAAAGGTCTTGGTTTTTAGCGGCGTTTGAGGGA
1 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGAGGGA
* **
7744500 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAAA
1 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGAGGGA
*
7744543 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCG-TTGGGGGA
1 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGAGGGA
* * *
7744585 AAAGCGCCGTTAAAGGTCATT-GTCTTTAGCAGCGTTTGTGGGA
1 AAAGCGCCGCTAAAGGTC-TTGGTCTTTAGCGGCGTTTGAGGGA
7744628 AAAGCGCCGCTAAAG
1 AAAGCGCCGCTAAAG
7744643 TTAGCGACGA
Statistics
Matches: 167, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
42 34 0.20
43 114 0.68
44 19 0.11
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.27
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGAGGGA
Found at i:7744547 original size:86 final size:85
Alignment explanation
Indices: 7744413--7744642 Score: 309
Period size: 85 Copynumber: 2.7 Consensus size: 85
7744403 GTTTTTGGAG
* * * * * **
7744413 AAAGTGCCACTAAAGGTCTTGTTTTTTTAGCGGCGCTTCAGGAAAAAGCGCCGCTAAAGGTCTTG
1 AAAGCGCCGCTAAAGGTCTTG-GTCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTG
*
7744478 GTTTTTAGCGGCGTTTGAGGGA
65 GTCTTTAGCGGCG-TTGAGGGA
*
7744500 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCTTGG
1 AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGG
*
7744565 TCTTTAGCGGCGTTGGGGGA
66 TCTTTAGCGGCGTTGAGGGA
* * *
7744585 AAAGCGCCGTTAAAGGTCATT-GTCTTTAGCAGCGTTTGTGGGAAAAGCGCCGCTAAAG
1 AAAGCGCCGCTAAAGGTC-TTGGTCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAG
7744643 TTAGCGACGA
Statistics
Matches: 128, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
85 58 0.45
86 51 0.40
87 19 0.15
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.27
Consensus pattern (85 bp):
AAAGCGCCGCTAAAGGTCTTGGTCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGTCTTGG
TCTTTAGCGGCGTTGAGGGA
Found at i:7750069 original size:29 final size:29
Alignment explanation
Indices: 7750036--7750100 Score: 80
Period size: 30 Copynumber: 2.2 Consensus size: 29
7750026 AATCAAAATC
7750036 AATAAAAGC-TATAAAAAT-TATTAAAATTT
1 AATAAAA-CATATAAAAATAT-TTAAAATTT
7750065 AATAAAACAATATAAAAATATTTAAAATTT
1 AATAAAAC-ATATAAAAATATTTAAAATTT
*
7750095 ATTAAA
1 AATAAA
7750101 TTTAGAAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
28 1 0.03
29 7 0.22
30 23 0.72
31 1 0.03
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.34
Consensus pattern (29 bp):
AATAAAACATATAAAAATATTTAAAATTT
Found at i:7750122 original size:40 final size:40
Alignment explanation
Indices: 7750047--7750122 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
7750037 ATAAAAGCTA
* *
7750047 TAAAAATTATTAAAATTTAATAAAACAATATAAAAATATT
1 TAAAAATTATTAAAATTTAATAAAAAAATAAAAAAATATT
*
7750087 TAAAATTTATT-AAATTTAGA-AAAAAAATTAAAAAAA
1 TAAAAATTATTAAAATTTA-ATAAAAAAA-TAAAAAAA
7750123 ATCGTAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
39 13 0.42
40 18 0.58
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (40 bp):
TAAAAATTATTAAAATTTAATAAAAAAATAAAAAAATATT
Found at i:7750197 original size:19 final size:18
Alignment explanation
Indices: 7750175--7750236 Score: 65
Period size: 19 Copynumber: 3.3 Consensus size: 18
7750165 TAAATTTTTG
7750175 TAAAATCGTAAGAAAATTA
1 TAAAATCGTAA-AAAATTA
7750194 TAAAAAT-GTAAAGAAA-TA
1 T-AAAATCGTAAA-AAATTA
7750212 TAAAATTCGTAAAAGAATTA
1 TAAAA-TCGTAAAA-AATTA
7750232 TAAAA
1 TAAAA
7750237 ATTATCATAC
Statistics
Matches: 37, Mismatches: 0, Indels: 11
0.77 0.00 0.23
Matches are distributed among these distances:
17 4 0.11
18 6 0.16
19 15 0.41
20 12 0.32
ACGTcount: A:0.61, C:0.03, G:0.10, T:0.26
Consensus pattern (18 bp):
TAAAATCGTAAAAAATTA
Found at i:7750207 original size:20 final size:21
Alignment explanation
Indices: 7750176--7750238 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 21
7750166 AAATTTTTGT
7750176 AAAATCGT-AAGAAAATTATA
1 AAAATCGTAAAGAAAATTATA
7750196 AAAAT-GTAAAG-AAA-TATA
1 AAAATCGTAAAGAAAATTATA
* *
7750214 AAATTCGTAAA-AGAATTATA
1 AAAATCGTAAAGAAAATTATA
7750234 AAAAT
1 AAAAT
7750239 TATCATACCA
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
18 8 0.22
19 12 0.33
20 16 0.44
ACGTcount: A:0.62, C:0.03, G:0.10, T:0.25
Consensus pattern (21 bp):
AAAATCGTAAAGAAAATTATA
Found at i:7750460 original size:20 final size:20
Alignment explanation
Indices: 7750415--7750459 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
7750405 TAAAAGACTT
*
7750415 TTTTTATGTATTTTATAATA
1 TTTTTATGTATTTTATAAGA
*
7750435 TTTTTATGATTTTTTATAAGA
1 TTTTTATG-TATTTTATAAGA
7750456 TTTT
1 TTTT
7750460 ACATTTTTAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 8 0.36
21 14 0.64
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (20 bp):
TTTTTATGTATTTTATAAGA
Found at i:7750498 original size:21 final size:21
Alignment explanation
Indices: 7750425--7750527 Score: 60
Period size: 20 Copynumber: 5.1 Consensus size: 21
7750415 TTTTTATGTA
**
7750425 TTTTATA-ATATTTTTATGAT
1 TTTTATATATATTTTTACAAT
*
7750445 TTTT-TATA-AGATTTTAC-AT
1 TTTTATATATA-TTTTTACAAT
*
7750464 TTTTATGGT-T-TTTTTACAAT
1 TTTTAT-ATATATTTTTACAAT
7750484 TTTTATATATATTTTT-CTAAT
1 TTTTATATATATTTTTAC-AAT
* *
7750505 TTTTA-ATATTTTTATTAAAAT
1 TTTTATATATATTT-TTACAAT
7750526 TT
1 TT
7750528 AATAATTTTT
Statistics
Matches: 65, Mismatches: 7, Indels: 21
0.70 0.08 0.23
Matches are distributed among these distances:
19 16 0.25
20 28 0.43
21 21 0.32
ACGTcount: A:0.29, C:0.03, G:0.04, T:0.64
Consensus pattern (21 bp):
TTTTATATATATTTTTACAAT
Found at i:7750547 original size:19 final size:19
Alignment explanation
Indices: 7750474--7750558 Score: 73
Period size: 19 Copynumber: 4.4 Consensus size: 19
7750464 TTTTATGGTT
*
7750474 TTTTTACAATTTTTATATATA
1 TTTTTATAATTTTTA-ATA-A
*
7750495 TTTTTCTAATTTTTAAT-A
1 TTTTTATAATTTTTAATAA
**
7750513 TTTTTATTAAAATTTAATAA
1 TTTTTA-TAATTTTTAATAA
* * *
7750533 TTTTTATAACTTTTATTGA
1 TTTTTATAATTTTTAATAA
7750552 TTTTTAT
1 TTTTTAT
7750559 TTTTTGTATT
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
18 6 0.11
19 25 0.47
20 9 0.17
21 13 0.25
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.64
Consensus pattern (19 bp):
TTTTTATAATTTTTAATAA
Found at i:7750668 original size:26 final size:26
Alignment explanation
Indices: 7750634--7750690 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
7750624 TTAGGGACAA
*
7750634 TTAACTTTAATTG-TCAACTGTTAAAG
1 TTAACTTTAA-TGATCAACTGCTAAAG
*
7750660 TTAAGTTTAATGATCAACTGCTAAAG
1 TTAACTTTAATGATCAACTGCTAAAG
7750686 TTAAC
1 TTAAC
7750691 GGTCAAAGGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
25 2 0.07
26 25 0.93
ACGTcount: A:0.37, C:0.12, G:0.12, T:0.39
Consensus pattern (26 bp):
TTAACTTTAATGATCAACTGCTAAAG
Found at i:7750859 original size:87 final size:87
Alignment explanation
Indices: 7750702--7750873 Score: 197
Period size: 87 Copynumber: 2.0 Consensus size: 87
7750692 GTCAAAGGAT
* * ** *
7750702 CTTTTTGAGGCATTTTAACAGTTCAAGTACTCAATTCAGTGCAAAAAAAAAAGAGGTTTAATTGT
1 CTTTTTGAGGCATTTTAACAGTTCAAGTACCCAATTAAGTGCAAAAAAAAAAGAGGCCTAATTGA
*
7750767 TTTTTTGAAAAAGTTTGAAGGC
66 ATTTTTGAAAAAGTTTGAAGGC
** *
7750789 CTTTTTGATTCATTTTGAA-AGTTCAAGTACCCAATTAAGTGCAAAAAAAAATATG-TGCCTAAT
1 CTTTTTGAGGCATTTT-AACAGTTCAAGTACCCAATTAAGTGCAAAAAAAAA-A-GAGGCCTAAT
**
7750852 T-AATTTTTGAAATCGTTTGAAG
63 TGAATTTTTGAAAAAGTTTGAAG
7750874 AATTTTTACA
Statistics
Matches: 71, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
87 61 0.86
88 9 0.13
89 1 0.01
ACGTcount: A:0.36, C:0.11, G:0.16, T:0.37
Consensus pattern (87 bp):
CTTTTTGAGGCATTTTAACAGTTCAAGTACCCAATTAAGTGCAAAAAAAAAAGAGGCCTAATTGA
ATTTTTGAAAAAGTTTGAAGGC
Found at i:7751601 original size:9 final size:9
Alignment explanation
Indices: 7751587--7751617 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
7751577 GTTAAACGAA
7751587 TCGAGTTAT
1 TCGAGTTAT
*
7751596 TCGAGTTAA
1 TCGAGTTAT
7751605 TCGAGTTAT
1 TCGAGTTAT
7751614 TCGA
1 TCGA
7751618 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:7751688 original size:9 final size:9
Alignment explanation
Indices: 7751671--7751707 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
7751661 TGAGTTTTCG
7751671 AATTCGAAT
1 AATTCGAAT
*
7751680 AACTCGAAT
1 AATTCGAAT
7751689 AATTCGAAT
1 AATTCGAAT
7751698 AATTCGAAT
1 AATTCGAAT
7751707 A
1 A
7751708 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:7756060 original size:22 final size:22
Alignment explanation
Indices: 7756033--7756074 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
7756023 TAAATTTACT
* *
7756033 AAAAATAATTTTATTTATAGTA
1 AAAAATAATATTATATATAGTA
7756055 AAAAATAATATTATATATAG
1 AAAAATAATATTATATATAG
7756075 GATTATTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.40
Consensus pattern (22 bp):
AAAAATAATATTATATATAGTA
Found at i:7762748 original size:110 final size:109
Alignment explanation
Indices: 7762552--7762859 Score: 433
Period size: 110 Copynumber: 2.8 Consensus size: 109
7762542 GAAATTCAAG
* * * * * *
7762552 AGGATATTTGGCAATTTGGTTAAACGAG--AAATCGAAACCCAGCACCTTAGGGCACG-TTCCTT
1 AGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* * *
7762614 GAATTTCCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAA
66 GAATTT-CCAAACGCAAAAAATTGCCTTATTTTAAAATTTTTAAA
* *
7762659 AGGCTATTTAGCTATTTGGTTGAACGAGAAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCT
1 AGGATATTTAGCTATTTGGTTGAACGAG-AAAAATCGACACCCAGCACCTTAGGGCACGTTTTCT
*
7762724 CGAATTTCCAAACACAAAAAATTGCCTTATTTTAAAATTTTTAAA
65 CGAATTTCCAAACGCAAAAAATTGCCTTATTTTAAAATTTTTAAA
* *
7762769 AGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAAGGCACGTTTTATC
1 AGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* *
7762834 GAATTTCCAAACGCTAAATATTGCCT
66 GAATTTCCAAACGCAAAAAATTGCCT
7762860 CAATTAGAAA
Statistics
Matches: 178, Mismatches: 19, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
107 24 0.13
109 57 0.32
110 87 0.49
111 10 0.06
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Consensus pattern (109 bp):
AGGATATTTAGCTATTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
GAATTTCCAAACGCAAAAAATTGCCTTATTTTAAAATTTTTAAA
Found at i:7763369 original size:15 final size:15
Alignment explanation
Indices: 7763345--7763395 Score: 93
Period size: 15 Copynumber: 3.4 Consensus size: 15
7763335 AAATGGAAAT
7763345 ATAATGATAATAATA
1 ATAATGATAATAATA
*
7763360 ATATTGATAATAATA
1 ATAATGATAATAATA
7763375 ATAATGATAATAATA
1 ATAATGATAATAATA
7763390 ATAATG
1 ATAATG
7763396 GTAACATTAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 34 1.00
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (15 bp):
ATAATGATAATAATA
Found at i:7763413 original size:3 final size:3
Alignment explanation
Indices: 7763345--7763394 Score: 64
Period size: 3 Copynumber: 16.7 Consensus size: 3
7763335 AAATGGAAAT
* * * *
7763345 ATA ATG ATA ATA ATA ATA TTG ATA ATA ATA ATA ATG ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7763393 AT
1 AT
7763395 GGTAACATTA
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.58, C:0.00, G:0.06, T:0.36
Consensus pattern (3 bp):
ATA
Found at i:7765459 original size:218 final size:218
Alignment explanation
Indices: 7765124--7765525 Score: 576
Period size: 218 Copynumber: 1.8 Consensus size: 218
7765114 TGTATTGGGA
*
7765124 AGATAAGATTTACAATCTTCGATCTGCCCCACTACAACTTTAGAGGGATAAGACCTGCTTACTCA
1 AGATAAGATTTACAATCTTCGATCTGCCCCACTACAACTTCAGAGGGATAAGACCTGCTTACTCA
* **
7765189 GTCTGCTCTGCTGCAACTTCAGGGAGATAAAACCTGATGCGATCCACTCTACTACAACTTCAGAG
66 GTCTACTCCACTGCAACTTCAGGGAGATAAAACCTGATGCGATCCACTCTACTACAACTTCAGAG
* *
7765254 AGATACGATCTACT-ACTTTAATCCGCTCCTCTGCAACTTCAGGGAGATAGGATTATCGGCTTCA
131 AGATAAGATCT-CTGACTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTCA
7765318 ATCTGCTCTACTGGAACCTCTAGG
195 ATCTGCTCTACTGGAACCTCTAGG
* * * * *
7765342 AGATAAGGTTTGCCATCTTC-AGTCTGCCCCGCTACAACTTCAGGGGGATAAGACCTGCTTACTC
1 AGATAAGATTTACAATCTTCGA-TCTGCCCCACTACAACTTCAGAGGGATAAGACCTGCTTACTC
* * ** *
7765406 AGTCTACTCCACTGCAACTTCAGGGAGATAAGA-CTGGATGTGATCTGCTCTACTGCAACTTCAG
65 AGTCTACTCCACTGCAACTTCAGGGAGATAAAACCT-GATGCGATCCACTCTACTACAACTTCAG
* ** *
7765470 AGAGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATT
129 AGAGATAAGATCTCTGACTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATT
7765526 TGTTTCTTTC
Statistics
Matches: 161, Mismatches: 20, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
217 4 0.02
218 157 0.98
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (218 bp):
AGATAAGATTTACAATCTTCGATCTGCCCCACTACAACTTCAGAGGGATAAGACCTGCTTACTCA
GTCTACTCCACTGCAACTTCAGGGAGATAAAACCTGATGCGATCCACTCTACTACAACTTCAGAG
AGATAAGATCTCTGACTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTCAA
TCTGCTCTACTGGAACCTCTAGG
Found at i:7765501 original size:85 final size:86
Alignment explanation
Indices: 7765412--7765772 Score: 274
Period size: 85 Copynumber: 4.2 Consensus size: 86
7765402 ACTCAGTCTA
7765412 CTCCACTGCAACTTCAGGGAGATAAGA-CTGGATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
1 CTCCACTGCAACTTCAGGGAGATAAGATCTGGATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
7765476 AAGATCTGTGGTTTTAATCCG
66 AAGATCTGTGGTTTTAATCCG
* * * ** * *
7765497 CTCCACTGTAACTTCAGGGAGATAGGATTTGTTTCTTTCG-TCTGCT-TCACTGCAACTTCAGGG
1 CTCCACTGCAACTTCAGGGAGATAAGATCTG--GATGT-GATCTGCTCT-ACTGCAACTTCAGAG
* * * *
7765560 AGATAAGA-C--TGGATGTGATCTG
62 AGATAAGATCTGTGGTTTTAATCCG
* * * * * * * *
7765582 CTCTACTGCAACTTCAGAGAAATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAG-GAA
1 CTCCACTGCAACTTCAGGGAGATAAGATC--TGGATGTGATCTGCTCTACTGCAACTTCAGAG-A
* * * ** *
7765646 GATAGGAT-TAAT-TTCTTTCGTCTG
63 GATAAGATCT-GTGGT-TTTAATCCG
* * * * * *
7765670 CTCCACTGTAACCTCAGGGAGATAAGACCT-GATGCGATCTACTCTACTGTAACTTCAGAGAGAT
1 CTCCACTGCAACTTCAGGGAGATAAGATCTGGATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
* *
7765734 AAGATCTGTGATTTTAATCCA
66 AAGATCTGTGGTTTTAATCCG
7765755 CTCCACTGCAACTTCAGG
1 CTCCACTGCAACTTCAGG
7765773 AATATAGGAT
Statistics
Matches: 207, Mismatches: 51, Indels: 36
0.70 0.17 0.12
Matches are distributed among these distances:
84 1 0.00
85 135 0.65
86 6 0.03
87 4 0.02
88 60 0.29
89 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (86 bp):
CTCCACTGCAACTTCAGGGAGATAAGATCTGGATGTGATCTGCTCTACTGCAACTTCAGAGAGAT
AAGATCTGTGGTTTTAATCCG
Found at i:7765519 original size:44 final size:44
Alignment explanation
Indices: 7765412--7766794 Score: 385
Period size: 44 Copynumber: 31.7 Consensus size: 44
7765402 ACTCAGTCTA
* * * *
7765412 CTCCACTGCAACTTCAGGGAGATAAGA-C--TGGATGTGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTG
* * * *
7765453 CTCTACTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTG
* * * **
7765497 CTCCACTGTAACTTCAGGGAGATAGGATTTGT-TTCTTTCGTCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGT-TTTAATCTG
* * * * *
7765541 CTTCACTGCAACTTCAGGGAGATAAGA-C--TGGATGTGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTG
* * * * *
7765582 CTCTACTGCAACTTCAGAGAAATAAGATCTGTGGTTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTG
* * * * * **
7765626 CTCCACTGCAACTTCAGGAAGATAGGAT-TAAT-TTCTTTCGTCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCT-GTGGT-TTTAATCTG
* * *
7765670 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCG-----ATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTG-TG-GTTTTAATCTG
* * * **
7765711 CTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTG
* * * * * ** **
7765755 CTCCACTGCAACTTCAGGAATATAGGAT-TAATTTTTTTCGTCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCT-GTGGTTTTAATCTG
* * *** ** *
7765799 CTCCACTGTAACCTT-AGGAAGATAAGATTTGAAATTCTTCGGTCTA
1 CTCCACTGTAA-CTTCAGGGAGATAAGATCTGTGGTT-TT-AATCTG
*
7765845 CTCCACTGTAACCTT-AGGGAGATAAGACCTGATGCG-----ATCTG
1 CTCCACTGTAA-CTTCAGGGAGATAAGATCTG-TG-GTTTTAATCTG
* * * ** *
7765886 CTCTACTGTAACTTCAGAGAGATGAGATCCT-TTATTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGAT-CTGTGGTTTTAATCTG
* * * * * * * *
7765930 CTCTACTGTAACTTCAGAGAGATAGGAT-TATTAGCTTCAATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCT-GTGGTTTTAATCTG
* * * * *
7765974 CTCCGCTATAA-TCTCAGGGAGATAAGATCTCTGGCTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTGTGGTTTTAATCTG
* * **
7766018 CTCCACTGTAACCTCAGGGAGATAAGAT-AGT-GTCTTGGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGT-TTTAATCTG
* **** ** *
7766061 CTCCGCTGTAA-TCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTA
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTGTGGTT-TT-AATCTG
* * * * *** ** *
7766107 CTCCACTATAACCTCAGGGAGATAAGGTTTGAAATTCTTCGGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGTT-TT-AATCTG
* * *
7766153 CTCCACTGTAACCTCAGGGAGATAAGACCTGATGCG-----ATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTG-TG-GTTTTAATCTG
** * * * *
7766194 CTCTGCTGTAACTTTAGAGAGATAAGATCCT-TGATTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGAT-CTGTGGTTTTAATCTG
* * * * *
7766238 CACCACTGTAA-TATCAGGGAGATAGGATTACTAT--CTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGA-T-CTGTGGTTTTAATCTG
* * * * *
7766282 CTCTACTGTAA-TCTCAGGGAGATAAGATCTCTAGCTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTGTGGTTTTAATCTG
*** ** *
7766326 CTCCACTGTAACCTT-AGGGAGATAAGATCTGAAATTCTTCGGTCTA
1 CTCCACTGTAA-CTTCAGGGAGATAAGATCTGTGGTT-TT-AATCTG
* * * *** ** *
7766372 CTCCACTGTAACCTCAGGGAGATAAGGTTTGAAATTTTTCGGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTG-TGGTTTT-AATCTG
* * * * *** *
7766418 CTCCACTGTAACCTCATGGAGATAAGA-C-CT-GATACGATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTG
** * * *
7766459 CTCTGCTGTAACTTCAGAGAGATAAGATCCT-TGATTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGAT-CTGTGGTTTTAATCTG
* * * *
7766503 CTCCACTGTAA-TCTCAGGGAGATAGGATTACTAT--CTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGA-T-CTGTGGTTTTAATCTG
* * * *
7766547 CTCCGCTGTAA-TCTCAGGGAGATAAGATCTTTGGCTTCAATCTG
1 CTCCACTGTAACT-TCAGGGAGATAAGATCTGTGGTTTTAATCTG
* *** ** *
7766591 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGTT-TT-AATCTG
* * * *
7766637 CTCCACTGTAACCTCAGTGAGATAAGACCTGATGCG-----ATCTA
1 CTCCACTGTAACTTCAGGGAGATAAGATCTG-TG-GTTTTAATCTG
** * * ** *
7766678 CTCTGCTGTAACTTCAGAGAGATGAGATCCT-TTATTTTAATCCG
1 CTCCACTGTAACTTCAGGGAGATAAGAT-CTGTGGTTTTAATCTG
* * **
7766722 CTCCACTGTAACTTCAGGGAGATAGGAT-AGT-GTCTTCGATCTG
1 CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGT-TTTAATCTG
* *
7766765 CTCCGCTATAA-TCTCAGGGAGATAAGATCT
1 CTCCACTGTAACT-TCAGGGAGATAAGATCT
7766795 CTAATATTCA
Statistics
Matches: 1002, Mismatches: 252, Indels: 173
0.70 0.18 0.12
Matches are distributed among these distances:
40 9 0.01
41 187 0.19
42 19 0.02
43 74 0.07
44 488 0.49
45 22 0.02
46 199 0.20
47 4 0.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (44 bp):
CTCCACTGTAACTTCAGGGAGATAAGATCTGTGGTTTTAATCTG
Found at i:7765554 original size:129 final size:129
Alignment explanation
Indices: 7765407--7765825 Score: 644
Period size: 129 Copynumber: 3.2 Consensus size: 129
7765397 TGCTTACTCA
*
7765407 GTCTACTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
* * **
7765472 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTTGTTTCTTTC
66 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTC
*
7765536 GTCTGCTTCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
*
7765601 AAATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTC
66 AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTC
* * * * *
7765665 GTCTGCTCCACTGTAACCTCAGGGAGATAAGACCT-GATGCGATCTACTCTACTGTAACTTCAGA
1 GTCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTGGATGTGATCTGCTCTACTGCAACTTCAGA
* * * *
7765729 GAGATAAGATCTGTGATTTTAATCCACTCCACTGCAACTTCAGGAATATAGGATTAATTTTTTTC
65 GAGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTC
* *
7765794 GTCTGCTCCACTGTAACCTT-AGGAAGATAAGA
1 GTCTGCTCCACTGCAA-CTTCAGGGAGATAAGA
7765826 TTTGAAATTC
Statistics
Matches: 268, Mismatches: 20, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
129 264 0.99
130 4 0.01
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (129 bp):
GTCTGCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTGATCTGCTCTACTGCAACTTCAGAG
AGATAAGATCTGTGGTTTTAATCCGCTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTC
Found at i:7765876 original size:175 final size:173
Alignment explanation
Indices: 7765625--7765959 Score: 480
Period size: 175 Copynumber: 1.9 Consensus size: 173
7765615 GTTTTAATCC
* * *
7765625 GCTCCACTGCAACTTCAGGAAGATAGGATTAATTTCTTTCGTCTGCTCCACTGTAACCTCAGGGA
1 GCTCCACTGCAACTTCAGGAAGATAAGATTAAATTCTTTCGTCTACTCCACTGTAACCTCAGGGA
7765690 GATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGAT-CTGTGATTTTAATCC
66 GATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TGATTTTAATCC
*
7765754 ACTCCACTGCAACTTCAG-GAATATAGGATTAATTTTTTTCGTCT
130 ACTCCACTGCAACTTCAGAG-AGATAGGATTAATTTTTTTCGTCT
* *
7765798 GCTCCACTGTAACCTT-AGGAAGATAAGATTTGAAATTC-TTCGGTCTACTCCACTGTAACCTTA
1 GCTCCACTGCAA-CTTCAGGAAGATAAGA-TT-AAATTCTTTC-GTCTACTCCACTGTAACCTCA
* * *
7765861 GGGAGATAAGACCTGATGCGATCTGCTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAA
62 GGGAGATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTTAA
* * *
7765926 TCCGCTCTACTGTAACTTCAGAGAGATAGGATTA
127 TCCACTCCACTGCAACTTCAGAGAGATAGGATTA
7765960 TTAGCTTCAA
Statistics
Matches: 144, Mismatches: 12, Indels: 10
0.87 0.07 0.06
Matches are distributed among these distances:
173 22 0.15
174 8 0.06
175 111 0.77
176 3 0.02
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (173 bp):
GCTCCACTGCAACTTCAGGAAGATAAGATTAAATTCTTTCGTCTACTCCACTGTAACCTCAGGGA
GATAAGACCTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCCA
CTCCACTGCAACTTCAGAGAGATAGGATTAATTTTTTTCGTCT
Found at i:7765999 original size:175 final size:175
Alignment explanation
Indices: 7765639--7766044 Score: 463
Period size: 175 Copynumber: 2.3 Consensus size: 175
7765629 CACTGCAACT
* * *
7765639 TCAGGAAGATAGGA-TT-AATTTCTTTC-GTCTGCTCCACTGTAACCTCAGGGAGATAAGACCTG
1 TCAGGAAGATAAGATTTGAAATTC-TTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTG
7765701 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGCAA
65 ATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGCAA
* *** * * *
7765766 CTTCAGGAATATAGGATTAATTTTTTTCGTCTGCTCCACTGTAACC
130 CTTCAGGAAGATAGGATTAATTAGCTTCATCTACTCCACTATAACC
* *
7765812 TTAGGAAGATAAGATTTGAAATTCTTCGGTCTACTCCACTGTAACCTTAGGGAGATAAGACCTGA
1 TCAGGAAGATAAGATTTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGA
* * * * * *
7765877 TGCGATCTGCTCTACTGTAACTTCAGAGAGATGAGATCCT-TTATTTTAATCCGCTCTACTGTAA
66 TGCGATCTACTCTACTGTAACTTCAGAGAGATAAGAT-CTGTGATTTTAATCCACTCCACTGCAA
* *
7765941 CTTCA-GAGAGATAGGATT-ATTAGCTTCAATCTACTCCGCTATAATC
130 CTTCAGGA-AGATAGGATTAATTAGCTTC-ATCTACTCCACTATAACC
* * ** *
7765987 TCAGGGAGATAAGATCTCTG----GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGA
1 TCAGGAAGATAAGAT-T-TGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA
7766045 TAGTGTCTTG
Statistics
Matches: 198, Mismatches: 27, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
173 45 0.23
174 13 0.07
175 135 0.68
176 3 0.02
177 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.19, T:0.31
Consensus pattern (175 bp):
TCAGGAAGATAAGATTTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGA
TGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGATTTTAATCCACTCCACTGCAAC
TTCAGGAAGATAGGATTAATTAGCTTCATCTACTCCACTATAACC
Found at i:7766142 original size:46 final size:46
Alignment explanation
Indices: 7765626--7766668 Score: 482
Period size: 44 Copynumber: 23.7 Consensus size: 46
7765616 TTTTAATCCG
* * * * * *
7765626 CTCCACTGCAACTTCAGGAAGATAGGAT-T-AATTTCTTTCG-TCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTC-TTCGATCTA
* *
7765670 CTCCACTGTAACCTCAGGGAGATAAGACCTG--A---TGCGATCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTA
* * * ** * *
7765711 CTCTACTGTAACTTCAGAGAGATAAGATCTGTGATT-TT-AATCCA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTA
* * * * * * * *
7765755 CTCCACTGCAACTTCAGGAATATAGGAT-T-AATTTTTTTCG-TCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAA-ATTCTTCGATCTA
* * * *
7765799 CTCCACTGTAACCTTAGGAAGATAAGATTTGAAATTCTTCGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTA
* * * *
7765845 CTCCACTGTAACCTTAGGGAGATAAGACCTG--A---TGCGATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTA
* * * * ** * **
7765886 CTCTACTGTAACTTCAGAGAGATGAGATCCT-TTATT-TT-AATCCG
1 CTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTCGATCTA
* * * * *
7765930 CTCTACTGTAACTTCAGAGAGATAGGAT-T---ATTAGCTTCAATCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT--CTTCGATCTA
* * * * * * *
7765974 CTCCGCTATAATCTCAGGGAGATAAGATCT---CTGGCTTCAATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTCGATCTA
* * *
7766018 CTCCACTGTAACCTCAGGGAGATAAGA--T--AGTGTCTTGGATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTCGATCTA
* * * *
7766061 CTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTA
* * * *
7766107 CTCCACTATAACCTCAGGGAGATAAGGTTTGAAATTCTTCGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTA
* *
7766153 CTCCACTGTAACCTCAGGGAGATAAGACCTG--A---TGCGATCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTA
** * * * * **
7766194 CTCTGCTGTAACTTTAGAGAGATAAGATCCTTG--ATT-TT-AATCCG
1 CTCCACTGTAACCTCAGGGAGATAAGAT-C-TGAAATTCTTCGATCTA
* ** * * * *
7766238 CACCACTGTAATATCAGGGAGATAGGAT-T--ACTATCTTCAATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTCGATCTA
* * ** * * *
7766282 CTCTACTGTAATCTCAGGGAGATAAGATCT-CTA-GCTTCAATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTA
* *
7766326 CTCCACTGTAACCTTAGGGAGATAAGATCTGAAATTCTTCGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTA
* * * *
7766372 CTCCACTGTAACCTCAGGGAGATAAGGTTTGAAATTTTTCGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTA
* * *
7766418 CTCCACTGTAACCTCATGGAGATAAGACCTG--A---TACGATCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTA
** * * * **
7766459 CTCTGCTGTAACTTCAGAGAGATAAGATCCTTG--ATT-TT-AATCCG
1 CTCCACTGTAACCTCAGGGAGATAAGAT-C-TGAAATTCTTCGATCTA
* * * * *
7766503 CTCCACTGTAATCTCAGGGAGATAGGAT-T--ACTATCTTCAATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT-TCTTCGATCTA
* * * *
7766547 CTCCGCTGTAATCTCAGGGAGATAAGATCT----TTGGCTTCAATCTG
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATT--CTTCGATCTA
*
7766591 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTA
* *
7766637 CTCCACTGTAACCTCAGTGAGATAAGACCTGA
1 CTCCACTGTAACCTCAGGGAGATAAGATCTGA
7766669 TGCGATCTAC
Statistics
Matches: 781, Mismatches: 162, Indels: 110
0.74 0.15 0.10
Matches are distributed among these distances:
40 6 0.01
41 120 0.15
42 9 0.01
43 53 0.07
44 350 0.45
45 18 0.02
46 221 0.28
47 2 0.00
48 2 0.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (46 bp):
CTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGATCTA
Found at i:7766192 original size:308 final size:304
Alignment explanation
Indices: 7765497--7766443 Score: 1069
Period size: 308 Copynumber: 3.1 Consensus size: 304
7765487 TTTTAATCCG
* * * * * *
7765497 CTCCACTGTAACTTCAGGGAGAT-AGGATTTG--TTTCTTTC-GTCTGCTTCACTGCAACTTCAG
1 CTCCACTGTAACCTCAGGGAGATAAGG-TTTGAAATTC-TTCGGTCTACTCCACTGTAACCTCAG
* * * *
7765558 GGAGATAAGA-CTGGATGTGATCTGCTCTACTGCAACTTCAGAGAAATAAGAT-CTGTGGTTTTA
64 GGAGATAAGACCT-GATGCGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCCT-TGATTTTA
* * *
7765621 ATCCGCTCCACTGCAACTTCAGGAAGATAGGATTAATT-TCTTTC-GTCTGCTCCACTGTAACCT
127 ATCCGCTCCACTGTAACTTCAGG-AGATAGGATT-ATTATC-TTCAATCTGCTCCACTGTAATCT
* * * * * * *
7765684 CAGGGAGATAAGA-C-CTGATGCGATCTACTCTACTGTAACTTCAGAGAGATAAGATCTGTGAT-
189 CAGGGAGATAAGATCTCTGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGA--TGTGATC
** * * * * * ** *
7765746 TTTAATCCACTCCACTGCAACTTCAGGAATATAGGATTAATTTTTTTC-GTCTG
252 TTGGATCTACTCCACTGTAAC-TCAGGGAGATAAGATTAAAATTTTTCGGTCTA
* * * *
7765799 CTCCACTGTAACCTTAGGAAGATAAGATTTGAAATTCTTCGGTCTACTCCACTGTAACCTTAGGG
1 CTCCACTGTAACCTCAGGGAGATAAGGTTTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGG
* *
7765864 AGATAAGACCTGATGCGATCTGCTCTACTGTAACTTCAGAGAGATGAGATCCTTTATTTTAATCC
66 AGATAAGACCTGATGCGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCC
* * * * *
7765929 GCTCTACTGTAACTTCAGAGAGATAGGATTATTAGCTTCAATCTACTCCGCTATAATCTCAGGGA
131 GCTCCACTGTAACTTCAG-GAGATAGGATTATTATCTTCAATCTGCTCCACTGTAATCTCAGGGA
7765994 GATAAGATCTCTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATAGTG-TCTTGGAT
195 GATAAGATCTCT-GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-GTGATCTTGGAT
* * *
7766058 CTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTA
258 CTACTCCACTGTAA-CTCAGGGAGATAAGAT-TAAAATTTTTCGGTCTA
*
7766107 CTCCACTATAACCTCAGGGAGATAAGGTTTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGG
1 CTCCACTGTAACCTCAGGGAGATAAGGTTTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGG
* * *
7766172 AGATAAGACCTGATGCGATCTACTCTGCTGTAACTTTAGAGAGATAAGATCCTTGATTTTAATCC
66 AGATAAGACCTGATGCGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCC
* * *
7766237 GCACCACTGTAA-TATCAGGGAGATAGGATTACTATCTTCAATCTGCTCTACTGTAATCTCAGGG
131 GCTCCACTGTAACT-TCA-GGAGATAGGATTATTATCTTCAATCTGCTCCACTGTAATCTCAGGG
* *
7766301 AGATAAGATCTCTAGCTTCAATCTGCTCCACTGTAACCTTAGGGAGATAAGATCTGAAATTCTTC
194 AGATAAGATCTCT-GCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATGTG--A-TCTT-
* *
7766366 GG-TCTACTCCACTGTAACCTCAGGGAGATAAGGTTTGAAATTTTTCGGTCTA
254 GGATCTACTCCACTGTAA-CTCAGGGAGATAA-GATTAAAATTTTTCGGTCTA
*
7766418 CTCCACTGTAACCTCATGGAGATAAG
1 CTCCACTGTAACCTCAGGGAGATAAG
7766444 ACCTGATACG
Statistics
Matches: 547, Mismatches: 73, Indels: 41
0.83 0.11 0.06
Matches are distributed among these distances:
302 24 0.04
303 11 0.02
304 129 0.24
305 8 0.01
306 31 0.06
307 43 0.08
308 227 0.41
309 1 0.00
311 69 0.13
312 4 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.31
Consensus pattern (304 bp):
CTCCACTGTAACCTCAGGGAGATAAGGTTTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGG
AGATAAGACCTGATGCGATCTGCTCTACTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCC
GCTCCACTGTAACTTCAGGAGATAGGATTATTATCTTCAATCTGCTCCACTGTAATCTCAGGGAG
ATAAGATCTCTGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATGTGATCTTGGATCTA
CTCCACTGTAACTCAGGGAGATAAGATTAAAATTTTTCGGTCTA
Found at i:7766407 original size:265 final size:263
Alignment explanation
Indices: 7765795--7766662 Score: 1129
Period size: 265 Copynumber: 3.3 Consensus size: 263
7765785 ATTTTTTTCG
* * * *
7765795 TCTGCTCCACTGTAACCTTAGGAAGATAAGATTTGAAATTCTTCGGTCTACTCCACTGTAACCTT
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
*** * * * * * * * *
7765860 AGGGAGATAAGACCTG--A--TGCGATCTGCTCTACTGTAACTTCAGAGAGATGAGATCCTTTAT
66 AGGGAGATAAGGTTTGAAATTTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGA-CC-TGA-
*** ** * * ** * * ** * *
7765921 TTTAATCCGCTCTACTGTAACTTCAGAGAGATAGGATTATT-AGCTTCAATCTACTCCGCTATAA
128 TACGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGA-TTTTAATCCGCTCCACTGTAA
* ** * **
7765985 TCTCAGGGAGATAAGATCT-CTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-AG
192 TCTCAGGGAGATAGGAT-TACTATCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTC
**
7766048 TGTCTTGGA
256 TG-CTTCAA
* * * *
7766057 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTAAAATTCTTCGGTCTACTCCACTATAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
*
7766122 AGGGAGATAAGGTTTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATG
66 AGGGAGATAAGGTTTGAAATT-TTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATA
* * *
7766187 CGATCTACTCTGCTGTAACTTTAGAGAGATAAGATCCTTGATTTTAATCCGCACCACTGTAATAT
130 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCCGCTCCACTGTAATCT
*
7766252 CAGGGAGATAGGATTACTATCTTCAATCTGCTCTACTGTAATCTCAGGGAGATAAGATCTCTAGC
195 CAGGGAGATAGGATTACTATCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCT-GC
7766317 TTCAA
259 TTCAA
*
7766322 TCTGCTCCACTGTAACCTTAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
*
7766387 AGGGAGATAAGGTTTGAAATTTTTCGGTCTACTCCACTGTAACCTCATGGAGATAAGACCTGATA
66 AGGGAGATAAGGTTTGAAA-TTTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATA
7766452 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCCGCTCCACTGTAATCT
130 CGATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCCGCTCCACTGTAATCT
* *
7766517 CAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTTTGGC
195 CAGGGAGATAGGATTACTATCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCT-GC
7766582 TTCAA
259 TTCAA
7766587 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
*
7766652 AGTGAGATAAG
66 AGGGAGATAAG
7766663 ACCTGATGCG
Statistics
Matches: 534, Mismatches: 62, Indels: 17
0.87 0.10 0.03
Matches are distributed among these distances:
262 70 0.13
263 1 0.00
264 99 0.19
265 330 0.62
266 5 0.01
267 29 0.05
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (263 bp):
TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTC
AGGGAGATAAGGTTTGAAATTTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATAC
GATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCTTGATTTTAATCCGCTCCACTGTAATCTC
AGGGAGATAGGATTACTATCTTCAATCTGCTCCACTGTAATCTCAGGGAGATAAGATCTCTGCTT
CAA
Found at i:7766597 original size:219 final size:218
Alignment explanation
Indices: 7766276--7766794 Score: 751
Period size: 219 Copynumber: 2.4 Consensus size: 218
7766266 TACTATCTTC
* * * * * *
7766276 AATCTGCTCTACTGTAATCTCAGGGAGATAAGATCT-CTAGCTTCAATCTGCTCCACTGTAACCT
1 AATCCGCTCCACTGTAATCTCAGGGAGATAGGAT-TACTATCTTCAATCTGCTCCGCTGTAATCT
* ** * *
7766340 TAGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGGTTTGAA
65 CAGGGAGATAAGATCT---ATTCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAA
*
7766405 ATTTTTCGGTCTACTCCACTGTAACCTCA-TGGAGATAAGACCTGATACGATCTACTCTGCTGTA
127 ATTCTTCGGTCTACTCCACTGTAACCTCAGT-GAGATAAGACCTGATACGATCTACTCTGCTGTA
7766469 ACTTCAGAGAGATAAGATCCTTGATTTT
191 ACTTCAGAGAGATAAGATCCTTGATTTT
7766497 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTC
1 AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTC
*
7766562 AGGGAGATAAGATCT-TTGGCTTCAATCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
66 AGGGAGATAAGATCTATT--CTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAAT
*
7766626 TCTTCGGTCTACTCCACTGTAACCTCAGTGAGATAAGACCTGATGCGATCTACTCTGCTGTAACT
129 TCTTCGGTCTACTCCACTGTAACCTCAGTGAGATAAGACCTGATACGATCTACTCTGCTGTAACT
* *
7766691 TCAGAGAGATGAGATCCTTTATTTT
194 TCAGAGAGATAAGATCCTTGATTTT
* * * *
7766716 AATCCGCTCCACTGTAA-CTTCAGGGAGATAGGA-TAGTGTCTTCGATCTGCTCCGCTATAATCT
1 AATCCGCTCCACTGTAATC-TCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCT
7766779 CAGGGAGATAAGATCT
65 CAGGGAGATAAGATCT
7766795 CTAATATTCA
Statistics
Matches: 273, Mismatches: 20, Indels: 13
0.89 0.07 0.04
Matches are distributed among these distances:
217 2 0.01
218 43 0.16
219 155 0.57
220 2 0.01
221 71 0.26
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (218 bp):
AATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTATCTTCAATCTGCTCCGCTGTAATCTC
AGGGAGATAAGATCTATTCTTCAATCTACTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTC
TTCGGTCTACTCCACTGTAACCTCAGTGAGATAAGACCTGATACGATCTACTCTGCTGTAACTTC
AGAGAGATAAGATCCTTGATTTT
Found at i:7767286 original size:17 final size:17
Alignment explanation
Indices: 7767273--7767306 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
7767263 TCTCTTCTCC
7767273 GAGGTAACCTCTTCCTA
1 GAGGTAACCTCTTCCTA
7767290 GAGGTAACCTCTTCCTA
1 GAGGTAACCTCTTCCTA
7767307 TTGCCTGATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (17 bp):
GAGGTAACCTCTTCCTA
Found at i:7768057 original size:13 final size:13
Alignment explanation
Indices: 7768039--7768063 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7768029 TAGCCTCTCC
7768039 ATTTTTCATTTTA
1 ATTTTTCATTTTA
7768052 ATTTTTCATTTT
1 ATTTTTCATTTT
7768064 TCATTTTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.08, G:0.00, T:0.72
Consensus pattern (13 bp):
ATTTTTCATTTTA
Found at i:7768072 original size:8 final size:7
Alignment explanation
Indices: 7768038--7768071 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
7768028 TTAGCCTCTC
7768038 CATTTTT
1 CATTTTT
7768045 CA-TTTT
1 CATTTTT
*
7768051 AATTTTT
1 CATTTTT
7768058 CATTTTT
1 CATTTTT
7768065 CATTTTT
1 CATTTTT
7768072 TTTTCGACTC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 5 0.21
7 19 0.79
ACGTcount: A:0.18, C:0.12, G:0.00, T:0.71
Consensus pattern (7 bp):
CATTTTT
Found at i:7768916 original size:17 final size:17
Alignment explanation
Indices: 7768876--7768944 Score: 63
Period size: 16 Copynumber: 4.2 Consensus size: 17
7768866 TCTTCTTTCC
*
7768876 TTTTC-TCATTTTTATT
1 TTTTCTTCATTTTGATT
* *
7768892 TTGATCTTGATTTTGATT
1 TT-TTCTTCATTTTGATT
*
7768910 TTTTCTTCTTTTTG-TT
1 TTTTCTTCATTTTGATT
*
7768926 TTTT-TTTATTTTGATT
1 TTTTCTTCATTTTGATT
7768942 TTT
1 TTT
7768945 GATTTTTGAT
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
15 7 0.17
16 13 0.31
17 11 0.26
18 11 0.26
ACGTcount: A:0.10, C:0.07, G:0.07, T:0.75
Consensus pattern (17 bp):
TTTTCTTCATTTTGATT
Found at i:7768959 original size:28 final size:27
Alignment explanation
Indices: 7768920--7768984 Score: 76
Period size: 29 Copynumber: 2.3 Consensus size: 27
7768910 TTTTCTTCTT
* * * *
7768920 TTTGTTTTTTTTTATTTTGATTTTTGATT
1 TTTGATTTTTTTCATTTTCA-TTTTGA-C
7768949 TTTGATTTTTTTCATTTTCATTTTGAC
1 TTTGATTTTTTTCATTTTCATTTTGAC
7768976 TTTGATTTT
1 TTTGATTTT
7768985 GATTTTTCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
27 9 0.28
28 6 0.19
29 17 0.53
ACGTcount: A:0.12, C:0.05, G:0.09, T:0.74
Consensus pattern (27 bp):
TTTGATTTTTTTCATTTTCATTTTGAC
Found at i:7768987 original size:6 final size:6
Alignment explanation
Indices: 7768883--7768990 Score: 61
Period size: 6 Copynumber: 18.8 Consensus size: 6
7768873 TCCTTTTCTC
* * * *
7768883 ATTTTT ATTTTG ATCTTG ATTTTG ATTTT- -TTCTTC TTTTTG -TTTT-
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATT-TTG ATTTTG ATTTTG
* * *
7768928 -TTTTT ATTTTG ATTTTTG ATTTTTG A-TTT- -TTTTC ATTTTC ATTTTG
1 ATTTTG ATTTTG A-TTTTG A-TTTTG ATTTTG ATTTTG ATTTTG ATTTTG
*
7768974 ACTTTG ATTTTG ATTTT
1 ATTTTG ATTTTG ATTTT
7768991 TCTTTTTCTT
Statistics
Matches: 85, Mismatches: 8, Indels: 18
0.77 0.07 0.16
Matches are distributed among these distances:
4 9 0.11
5 9 0.11
6 52 0.61
7 15 0.18
ACGTcount: A:0.13, C:0.06, G:0.09, T:0.72
Consensus pattern (6 bp):
ATTTTG
Found at i:7772516 original size:110 final size:109
Alignment explanation
Indices: 7772333--7772640 Score: 415
Period size: 110 Copynumber: 2.8 Consensus size: 109
7772323 GAAATTCAAG
* * * * * * * *
7772333 AGGATATTTGGCAAGTTGGTTAAACGAG--AAATTGAAACCCAGCACCTTAGGGCACG-TTCCTT
1 AGGATATTTAGCTACTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* *
7772395 GAATTTCCCAAACGCAAAACATTGCCTTATTTTGAAATTTTTGAA
66 GAATTT-CCAAACGCAAAACATTGCCTTATTTTAAAATTTTTAAA
* * *
7772440 AGGCTATTTAGCTATTTGGTTGAACGAGAAAAAATCGACACCCAGCACCTTAGGGCATGTTTTCT
1 AGGATATTTAGCTACTTGGTTGAACGAG-AAAAATCGACACCCAGCACCTTAGGGCACGTTTTCT
*
7772505 CGAATTTCCAAACACAAAACATTGCCTTATTTTAAAATTTTTAAA
65 CGAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTTAAA
* *
7772550 AGGATATTTAGCTACTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAAGGCACGTTTTATC
1 AGGATATTTAGCTACTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
* *
7772615 GAATTTCCAAACGCTAAATATTGCCT
66 GAATTTCCAAACGCAAAACATTGCCT
7772641 CAATTAGAAA
Statistics
Matches: 176, Mismatches: 21, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
107 23 0.13
109 57 0.32
110 86 0.49
111 10 0.06
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (109 bp):
AGGATATTTAGCTACTTGGTTGAACGAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTC
GAATTTCCAAACGCAAAACATTGCCTTATTTTAAAATTTTTAAA
Found at i:7773150 original size:18 final size:18
Alignment explanation
Indices: 7773129--7773188 Score: 120
Period size: 18 Copynumber: 3.3 Consensus size: 18
7773119 AAATGGAAAT
7773129 ATAATGATAATAATAATA
1 ATAATGATAATAATAATA
7773147 ATAATGATAATAATAATA
1 ATAATGATAATAATAATA
7773165 ATAATGATAATAATAATA
1 ATAATGATAATAATAATA
7773183 ATAATG
1 ATAATG
7773189 GTAACATTAA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 42 1.00
ACGTcount: A:0.60, C:0.00, G:0.07, T:0.33
Consensus pattern (18 bp):
ATAATGATAATAATAATA
Found at i:7773206 original size:3 final size:3
Alignment explanation
Indices: 7773129--7773187 Score: 91
Period size: 3 Copynumber: 19.7 Consensus size: 3
7773119 AAATGGAAAT
* * *
7773129 ATA ATG ATA ATA ATA ATA ATA ATG ATA ATA ATA ATA ATA ATG ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
7773177 ATA ATA ATA AT
1 ATA ATA ATA AT
7773188 GGTAACATTA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.61, C:0.00, G:0.05, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:7774852 original size:12 final size:12
Alignment explanation
Indices: 7774835--7774864 Score: 51
Period size: 12 Copynumber: 2.4 Consensus size: 12
7774825 TGATAATTTC
7774835 TTTTTCTTTATT
1 TTTTTCTTTATT
7774847 TTTTTCTTTATT
1 TTTTTCTTTATT
7774859 TCTTTT
1 T-TTTT
7774865 TGGTTTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 13 0.76
13 4 0.24
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTTCTTTATT
Found at i:7774862 original size:20 final size:20
Alignment explanation
Indices: 7774831--7774895 Score: 62
Period size: 20 Copynumber: 3.1 Consensus size: 20
7774821 TTAATGATAA
*
7774831 TTTCTTTTTCTTTATTTTTT
1 TTTCTATTTCTTTATTTTTT
7774851 TCTT-TATTTCTTT-TTGGTTTT
1 T-TTCTATTTCTTTATT--TTTT
7774872 TTTCTATCTTCTTTTATTTTTT
1 TTTCTAT-TTC-TTTATTTTTT
7774894 TT
1 TT
7774896 CGTGGGGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 12
0.74 0.02 0.24
Matches are distributed among these distances:
19 2 0.05
20 11 0.30
21 10 0.27
22 9 0.24
23 3 0.08
24 2 0.05
ACGTcount: A:0.06, C:0.11, G:0.03, T:0.80
Consensus pattern (20 bp):
TTTCTATTTCTTTATTTTTT
Found at i:7774893 original size:22 final size:20
Alignment explanation
Indices: 7774837--7774895 Score: 59
Period size: 21 Copynumber: 2.9 Consensus size: 20
7774827 ATAATTTCTT
7774837 TTTC-TTTATTTTTTTCTTTA
1 TTTCTTTTATTTTTTT-TTTA
*
7774857 TTTCTTTT-TGGTTTTTTTCTA
1 TTTCTTTTAT--TTTTTTTTTA
7774878 TCTTCTTTTATTTTTTTT
1 T-TTCTTTTATTTTTTTT
7774896 CGTGGGGAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 9
0.77 0.02 0.21
Matches are distributed among these distances:
20 5 0.15
21 14 0.42
22 13 0.39
23 1 0.03
ACGTcount: A:0.07, C:0.10, G:0.03, T:0.80
Consensus pattern (20 bp):
TTTCTTTTATTTTTTTTTTA
Found at i:7778972 original size:18 final size:18
Alignment explanation
Indices: 7778949--7779008 Score: 56
Period size: 18 Copynumber: 3.4 Consensus size: 18
7778939 ATGGACAGTT
7778949 GAACAAGTTGACAATCAA
1 GAACAAGTTGACAATCAA
*
7778967 GAACAAG-T-AC--TCGTTA
1 GAACAAGTTGACAATC--AA
*
7778983 GAACAAGTTGACAATTAA
1 GAACAAGTTGACAATCAA
7779001 GAACAAGT
1 GAACAAGT
7779009 ACCCGTTACA
Statistics
Matches: 33, Mismatches: 3, Indels: 12
0.69 0.06 0.25
Matches are distributed among these distances:
14 2 0.06
16 10 0.30
17 2 0.06
18 18 0.55
20 1 0.03
ACGTcount: A:0.47, C:0.15, G:0.18, T:0.20
Consensus pattern (18 bp):
GAACAAGTTGACAATCAA
Found at i:7778992 original size:34 final size:34
Alignment explanation
Indices: 7778949--7779016 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
7778939 ATGGACAGTT
*
7778949 GAACAAGTTGACAATCAAGAACAAGTACTCGTTA
1 GAACAAGTTGACAATCAAGAACAAGTACCCGTTA
*
7778983 GAACAAGTTGACAATTAAGAACAAGTACCCGTTA
1 GAACAAGTTGACAATCAAGAACAAGTACCCGTTA
7779017 CAGAGGATTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.44, C:0.18, G:0.18, T:0.21
Consensus pattern (34 bp):
GAACAAGTTGACAATCAAGAACAAGTACCCGTTA
Found at i:7781958 original size:27 final size:25
Alignment explanation
Indices: 7781887--7781959 Score: 60
Period size: 27 Copynumber: 2.8 Consensus size: 25
7781877 TTAACGATAG
7781887 TTTCTTCTTCTTT-ATTTTCTTTATTTC
1 TTTCTTCTT-TTTCA-TTT-TTTATTTC
* *
7781914 TTTCTT-TTTGGTCGTTTTTTATCTTC
1 TTTCTTCTTT-TTCATTTTTTAT-TTC
7781940 TTTTCTTCTTTTTCATTTTT
1 -TTTCTTCTTTTTCATTTTT
7781960 GATTATTTTG
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
25 6 0.16
26 9 0.24
27 19 0.51
28 3 0.08
ACGTcount: A:0.05, C:0.16, G:0.04, T:0.74
Consensus pattern (25 bp):
TTTCTTCTTTTTCATTTTTTATTTC
Found at i:7782737 original size:125 final size:127
Alignment explanation
Indices: 7782582--7782809 Score: 338
Period size: 125 Copynumber: 1.8 Consensus size: 127
7782572 AGTGCCGGGT
* * * **
7782582 TCACACGGGCAACGGACACGGGCATGTGTCTGGGCCATGTAACTCACTGTTTATGGAACAGGACC
1 TCACACGGGCAACGGACACGGGCATGTGTCTAGGCCATGTAACTCACTGTTTATGCAAAAAAACC
* *
7782647 ATACGGCCAGGG-ACACGGGTGTGTG-CCCAGGCCGTGTAACTCACTGTTTGTAGTATAAAAG
66 ATACGGCCAGGGCACACGGGCGTATGACCC-GGCCGTGTAACTCACTGTTTGTAGTATAAAAG
*
7782708 TCACACGGG-AAGGGACA-GTGGCATGTGTCTAGGCCATGTAACTCACTGTTTATGCAAAAAAAC
1 TCACACGGGCAACGGACACG-GGCATGTGTCTAGGCCATGTAACTCACTGTTTATGCAAAAAAAC
7782771 CATACGGCCAGGGCACACGGGCGTATGACCCGGCCGTGT
65 CATACGGCCAGGGCACACGGGCGTATGACCCGGCCGTGT
7782810 GGCAGATTAT
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
124 1 0.01
125 59 0.65
126 28 0.31
127 3 0.03
ACGTcount: A:0.25, C:0.25, G:0.30, T:0.20
Consensus pattern (127 bp):
TCACACGGGCAACGGACACGGGCATGTGTCTAGGCCATGTAACTCACTGTTTATGCAAAAAAACC
ATACGGCCAGGGCACACGGGCGTATGACCCGGCCGTGTAACTCACTGTTTGTAGTATAAAAG
Found at i:7791164 original size:22 final size:22
Alignment explanation
Indices: 7791129--7791182 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
7791119 ATATTTCTTT
7791129 AATTA-ATTTAATTTTAAAATC
1 AATTATATTTAATTTTAAAATC
* *
7791150 AATTATATTTTATTTTGAAATC
1 AATTATATTTAATTTTAAAATC
*
7791172 AATTCTATTTA
1 AATTATATTTA
7791183 GTATTTTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
21 5 0.18
22 23 0.82
ACGTcount: A:0.41, C:0.06, G:0.02, T:0.52
Consensus pattern (22 bp):
AATTATATTTAATTTTAAAATC
Found at i:7792826 original size:21 final size:21
Alignment explanation
Indices: 7792801--7792844 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
7792791 CAGCCCATAT
*
7792801 GTACC-AATAGATTTTAAATTA
1 GTACCAAATA-ATTTAAAATTA
7792822 GTACCAAATAATTTAAAATTA
1 GTACCAAATAATTTAAAATTA
7792843 GT
1 GT
7792845 TCTTGTAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 17 0.81
22 4 0.19
ACGTcount: A:0.45, C:0.09, G:0.09, T:0.36
Consensus pattern (21 bp):
GTACCAAATAATTTAAAATTA
Found at i:7794216 original size:61 final size:61
Alignment explanation
Indices: 7794146--7794368 Score: 171
Period size: 61 Copynumber: 3.4 Consensus size: 61
7794136 ACAGTGAGTT
*
7794146 ACACGGCCTAGACACATGCCCGTGTCTGTTGCCTGTGTGAACCCTACACTAATATGGCCAC
1 ACACGGCCTAGACACACGCCCGTGTCTGTTGCCTGTGTGAACCCTACACTAATATGGCCAC
* * * * *
7794207 ACACGGCCTAGACACACGCTCGTGTGC-CTTGCCCGTGT-AGCCCCAAATTTATAAACAGTAAGT
1 ACACGGCCTAGACACACGCCCGTGT-CTGTTGCCTGTGTGA-ACCC-------T--ACACTAA--
** * *
7794270 TACACGGCCAACC
53 TA-TGGCCA---C
*
7794283 ACACGGCCTAGACACATGCCCGTGTCTGTTGCCTGTGTGAACCCTACACTAATATGGCCAC
1 ACACGGCCTAGACACACGCCCGTGTCTGTTGCCTGTGTGAACCCTACACTAATATGGCCAC
*
7794344 ACACGGCCTAGACACACGCTCGTGT
1 ACACGGCCTAGACACACGCCCGTGT
7794369 GCCTTGCCCG
Statistics
Matches: 121, Mismatches: 22, Indels: 38
0.67 0.12 0.21
Matches are distributed among these distances:
60 1 0.01
61 59 0.49
62 1 0.01
64 2 0.02
65 2 0.02
67 6 0.05
68 1 0.01
69 1 0.01
70 6 0.05
72 2 0.02
73 2 0.02
75 1 0.01
76 36 0.30
77 1 0.01
ACGTcount: A:0.25, C:0.33, G:0.21, T:0.21
Consensus pattern (61 bp):
ACACGGCCTAGACACACGCCCGTGTCTGTTGCCTGTGTGAACCCTACACTAATATGGCCAC
Found at i:7794392 original size:137 final size:137
Alignment explanation
Indices: 7794146--7794428 Score: 566
Period size: 137 Copynumber: 2.1 Consensus size: 137
7794136 ACAGTGAGTT
7794146 ACACGGCCTAGACACATGCCCGTGTCTGTTGCCTGTGTGAACCCTACACTAATATGGCCACACAC
1 ACACGGCCTAGACACATGCCCGTGTCTGTTGCCTGTGTGAACCCTACACTAATATGGCCACACAC
7794211 GGCCTAGACACACGCTCGTGTGCCTTGCCCGTGTAGCCCCAAATTTATAAACAGTAAGTTACACG
66 GGCCTAGACACACGCTCGTGTGCCTTGCCCGTGTAGCCCCAAATTTATAAACAGTAAGTTACACG
7794276 GCCAACC
131 GCCAACC
7794283 ACACGGCCTAGACACATGCCCGTGTCTGTTGCCTGTGTGAACCCTACACTAATATGGCCACACAC
1 ACACGGCCTAGACACATGCCCGTGTCTGTTGCCTGTGTGAACCCTACACTAATATGGCCACACAC
7794348 GGCCTAGACACACGCTCGTGTGCCTTGCCCGTGTAGCCCCAAATTTATAAACAGTAAGTTACACG
66 GGCCTAGACACACGCTCGTGTGCCTTGCCCGTGTAGCCCCAAATTTATAAACAGTAAGTTACACG
7794413 GCCAACC
131 GCCAACC
7794420 ACACGGCCT
1 ACACGGCCT
7794429 GCCACACGGC
Statistics
Matches: 146, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
137 146 1.00
ACGTcount: A:0.25, C:0.33, G:0.20, T:0.21
Consensus pattern (137 bp):
ACACGGCCTAGACACATGCCCGTGTCTGTTGCCTGTGTGAACCCTACACTAATATGGCCACACAC
GGCCTAGACACACGCTCGTGTGCCTTGCCCGTGTAGCCCCAAATTTATAAACAGTAAGTTACACG
GCCAACC
Found at i:7797388 original size:41 final size:41
Alignment explanation
Indices: 7797330--7797544 Score: 200
Period size: 41 Copynumber: 5.2 Consensus size: 41
7797320 ATGAGGCTTT
* *
7797330 GGGGACTTTAGCGGCGTTTTTCAAAAAGCGTCGCTAATGCTA
1 GGGG-CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTA
* * * *
7797372 GGGGATTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGATC
1 GGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTA
* *
7797413 TGGGCTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGATCTA
1 GGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATG--CTA
* * * *
7797456 --GGCTTTAGCGGCTTTTTTGAAGAAGCGACGCTAATGCTC
1 GGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTA
* * * * * * * *
7797495 TGGCCTTTATCGACGTTTTTTAGAAAGTGTCGCTAATGCTCA
1 GGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCT-A
7797537 GGGGCTTT
1 GGGGCTTT
7797545 TAGCTGGGCT
Statistics
Matches: 140, Mismatches: 28, Indels: 10
0.79 0.16 0.06
Matches are distributed among these distances:
39 2 0.01
41 127 0.91
42 10 0.07
43 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.31
Consensus pattern (41 bp):
GGGGCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTA
Found at i:7797473 original size:82 final size:81
Alignment explanation
Indices: 7797335--7797539 Score: 232
Period size: 82 Copynumber: 2.5 Consensus size: 81
7797325 GCTTTGGGGA
* *
7797335 CTTTAGCGGCGTTTTTCAAAAAGCGTCGCTAATGCTAGGGGATTTAGCGGCGTTTTTGAAGAAGC
1 CTTTAGCGGCATTTTTCAAAAAGCGCCGCTAATGCTA-GGGATTTAGCGGCGTTTTTGAAGAAGC
* *
7797400 GCCGCTAATGATCTGGG
65 GACGCTAATGATCTGGC
* * *
7797417 CTTTAGCGGCATTTTTGAAAAAGCGCCGCTAATGATCTA-GGCTTTAGCGGCTTTTTTGAAGAAG
1 CTTTAGCGGCATTTTTCAAAAAGCGCCGCTAATG--CTAGGGATTTAGCGGCGTTTTTGAAGAAG
*
7797481 CGACGCTAATGCTCTGGC
64 CGACGCTAATGATCTGGC
* * * * * * *
7797499 CTTTATCGACGTTTTTTAGAAAGTGTCGCTAATGCTCAGGG
1 CTTTAGCGGCATTTTTCAAAAAGCGCCGCTAATGCT-AGGG
7797540 GCTTTTAGCT
Statistics
Matches: 104, Mismatches: 15, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
80 2 0.02
81 1 0.01
82 98 0.94
84 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.31
Consensus pattern (81 bp):
CTTTAGCGGCATTTTTCAAAAAGCGCCGCTAATGCTAGGGATTTAGCGGCGTTTTTGAAGAAGCG
ACGCTAATGATCTGGC
Found at i:7797801 original size:7 final size:7
Alignment explanation
Indices: 7797765--7797818 Score: 56
Period size: 7 Copynumber: 7.9 Consensus size: 7
7797755 TTGAGTTCAA
*
7797765 GGTTTAT
1 GGTTTAG
*
7797772 GGTGTA-
1 GGTTTAG
7797778 GGTTTAG
1 GGTTTAG
*
7797785 GGCTTAG
1 GGTTTAG
*
7797792 GGTTTGG
1 GGTTTAG
*
7797799 GGTTTAA
1 GGTTTAG
7797806 GGTTTAG
1 GGTTTAG
7797813 GGTTTA
1 GGTTTA
7797819 CGTTTTAATG
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
6 5 0.13
7 33 0.87
ACGTcount: A:0.15, C:0.02, G:0.41, T:0.43
Consensus pattern (7 bp):
GGTTTAG
Found at i:7797804 original size:21 final size:21
Alignment explanation
Indices: 7797778--7797817 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7797768 TTATGGTGTA
*
7797778 GGTTTAGGGCTTAGGGTTTGG
1 GGTTTAAGGCTTAGGGTTTGG
*
7797799 GGTTTAAGGTTTAGGGTTT
1 GGTTTAAGGCTTAGGGTTT
7797818 ACGTTTTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.12, C:0.03, G:0.42, T:0.42
Consensus pattern (21 bp):
GGTTTAAGGCTTAGGGTTTGG
Found at i:7797914 original size:21 final size:21
Alignment explanation
Indices: 7797890--7797930 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7797880 TAGGGCTTGA
* *
7797890 TGTTTATGGTTTACGGTTTAG
1 TGTTAATGGTTTAAGGTTTAG
7797911 TGTTAATGGTTTAAGGTTTA
1 TGTTAATGGTTTAAGGTTTA
7797931 CACAATGCAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.02, G:0.27, T:0.51
Consensus pattern (21 bp):
TGTTAATGGTTTAAGGTTTAG
Found at i:7799458 original size:31 final size:31
Alignment explanation
Indices: 7799417--7799496 Score: 124
Period size: 31 Copynumber: 2.6 Consensus size: 31
7799407 TGGGATTTTA
* *
7799417 ATTGGTTTTTGCAGCTAAGATGGTACCTTCT
1 ATTGGTTTTTGCTGCTAAGATGGTACATTCT
*
7799448 ATTGGGTTTTGCTGCTAAGATGGTACATTCT
1 ATTGGTTTTTGCTGCTAAGATGGTACATTCT
*
7799479 ATTGATTTTTGCTGCTAA
1 ATTGGTTTTTGCTGCTAA
7799497 ATCAACCATG
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 44 1.00
ACGTcount: A:0.20, C:0.14, G:0.23, T:0.44
Consensus pattern (31 bp):
ATTGGTTTTTGCTGCTAAGATGGTACATTCT
Found at i:7800342 original size:12 final size:12
Alignment explanation
Indices: 7800325--7800352 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
7800315 GCTAGCCTTG
7800325 ATGTTACTATTA
1 ATGTTACTATTA
7800337 ATGTTACTATTA
1 ATGTTACTATTA
7800349 ATGT
1 ATGT
7800353 CCTTAATCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.07, G:0.11, T:0.50
Consensus pattern (12 bp):
ATGTTACTATTA
Found at i:7801683 original size:43 final size:43
Alignment explanation
Indices: 7801635--7801777 Score: 169
Period size: 43 Copynumber: 3.2 Consensus size: 43
7801625 TTTTTATGAC
* *
7801635 CTTTAGCAGCGTTTGTGCTTAAAGCGCCACTAAAGATCATGTT
1 CTTTAGCGGCGTTTGTGATTAAAGCGCCACTAAAGATCATGTT
* * *
7801678 CTTTAGCGGCGTTTGTGATAAAAGCGCCGCTAAAGATTATGTT
1 CTTTAGCGGCGTTTGTGATTAAAGCGCCACTAAAGATCATGTT
** * *
7801721 CTTTAGCGGCGTTTGTGGGTAAAGCGCCGCTAGCTAAAGAACATGAT
1 CTTTAGCGGCGTTTGTGATTAAAGCG-C-C-A-CTAAAGATCATGTT
7801768 CTTTAGCGGC
1 CTTTAGCGGC
7801778 ATTTTTTCTC
Statistics
Matches: 84, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
43 61 0.73
44 1 0.01
45 1 0.01
47 21 0.25
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGATTAAAGCGCCACTAAAGATCATGTT
Found at i:7803716 original size:24 final size:24
Alignment explanation
Indices: 7803689--7803740 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7803679 TTAGTAAGTC
*
7803689 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7803713 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7803737 AAAT
1 AAAT
7803741 CTTCTAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7805684 original size:24 final size:24
Alignment explanation
Indices: 7805657--7805708 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
7805647 TTAGTAAGTC
*
7805657 AAATAAACTATACTAATAAATGCT
1 AAATAAACTATACTAATAAATACT
* *
7805681 AAATATATTATACTAATAAATACT
1 AAATAAACTATACTAATAAATACT
7805705 AAAT
1 AAAT
7805709 CTTCTAGAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.56, C:0.10, G:0.02, T:0.33
Consensus pattern (24 bp):
AAATAAACTATACTAATAAATACT
Found at i:7811714 original size:13 final size:13
Alignment explanation
Indices: 7811668--7811759 Score: 91
Period size: 13 Copynumber: 6.9 Consensus size: 13
7811658 TATAACTTAC
7811668 ATTACTTAAATAT
1 ATTACTTAAATAT
* *
7811681 ATTAATTACTAAAAT
1 ATTACTTA--AATAT
7811696 -TTACTTAAATAT
1 ATTACTTAAATAT
*
7811708 ATTACTTAAATAC
1 ATTACTTAAATAT
7811721 ATTACTTACTAGA-AT
1 ATTACTTA--A-ATAT
7811736 -TTACTTAAATAT
1 ATTACTTAAATAT
7811748 ATTACTTAAATA
1 ATTACTTAAATA
7811760 CATGACTTAC
Statistics
Matches: 65, Mismatches: 6, Indels: 16
0.75 0.07 0.18
Matches are distributed among these distances:
11 1 0.02
12 7 0.11
13 37 0.57
14 13 0.20
15 6 0.09
16 1 0.02
ACGTcount: A:0.46, C:0.10, G:0.01, T:0.43
Consensus pattern (13 bp):
ATTACTTAAATAT
Found at i:7811730 original size:40 final size:38
Alignment explanation
Indices: 7811651--7811903 Score: 228
Period size: 40 Copynumber: 6.5 Consensus size: 38
7811641 TATATATTTT
* * * *
7811651 TAAAATTTATAACTTACATTACTTAAATATATTAATTAC
1 TAAAATTTATAA-ATATATTACTTAAATACATTACTTAC
7811690 TAAAATTTACTTAAATATATTACTTAAATACATTACTTAC
1 TAAAATTTA--TAAATATATTACTTAAATACATTACTTAC
* *
7811730 TAGAATTTACTTAAATATATTACTTAAATACATGACTTAC
1 TAAAATTTA--TAAATATATTACTTAAATACATTACTTAC
**
7811770 TAAAA-TTA-AAGTATATATTACATTACTTACATTACTTAC
1 TAAAATTTATAA--ATATATTAC-TTAAATACATTACTTAC
* * *
7811809 TAAAA--TAT-ATTACATTACTTAAATATATTACTTAC
1 TAAAATTTATAAATATATTACTTAAATACATTACTTAC
* * * *
7811844 AAAAATTTATAACTTACATTACTTAAATATATTACATTAC
1 TAAAATTTATAA-ATATATTACTTAAATACATTAC-TTAC
*
7811884 TTAAAATTTATATATATATT
1 -TAAAATTTATAAATATATT
7811904 TAAAATATAT
Statistics
Matches: 182, Mismatches: 20, Indels: 23
0.81 0.09 0.10
Matches are distributed among these distances:
35 18 0.10
36 9 0.05
37 3 0.02
38 13 0.07
39 53 0.29
40 73 0.40
41 13 0.07
ACGTcount: A:0.45, C:0.11, G:0.01, T:0.43
Consensus pattern (38 bp):
TAAAATTTATAAATATATTACTTAAATACATTACTTAC
Found at i:7811767 original size:13 final size:13
Alignment explanation
Indices: 7811665--7811768 Score: 79
Period size: 13 Copynumber: 7.8 Consensus size: 13
7811655 ATTTATAACT
7811665 TACATTACTTAAA
1 TACATTACTTAAA
* *
7811678 TATATTAATTACTAA
1 TACATTACTTA--AA
7811693 -A-ATTTACTTAAA
1 TACA-TTACTTAAA
*
7811705 TATATTACTTAAA
1 TACATTACTTAAA
*
7811718 TACATTACTT-AC
1 TACATTACTTAAA
*
7811730 TAGAATTTACTTAAA
1 TA-CA-TTACTTAAA
*
7811745 TATATTACTTAAA
1 TACATTACTTAAA
*
7811758 TACATGACTTA
1 TACATTACTTA
7811769 CTAAAATTAA
Statistics
Matches: 73, Mismatches: 10, Indels: 16
0.74 0.10 0.16
Matches are distributed among these distances:
12 5 0.07
13 48 0.66
14 15 0.21
15 5 0.07
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (13 bp):
TACATTACTTAAA
Found at i:7811824 original size:22 final size:21
Alignment explanation
Indices: 7811796--7811886 Score: 72
Period size: 22 Copynumber: 4.6 Consensus size: 21
7811786 ATTACATTAC
7811796 TTACATTACTTACTAAAATATA
1 TTACATTACTTA-TAAAATATA
7811818 TTACATTAC-T-T-AAATATA
1 TTACATTACTTATAAAATATA
*
7811836 TTAC-TTAC--A-AAAATTTA
1 TTACATTACTTATAAAATATA
* *
7811853 TAAC-TTACATTACTTAAATATA
1 TTACATTAC-TTA-TAAAATATA
7811875 TTACATTACTTA
1 TTACATTACTTA
7811887 AAATTTATAT
Statistics
Matches: 56, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
17 17 0.30
18 11 0.20
19 1 0.02
20 1 0.02
21 1 0.02
22 21 0.38
23 4 0.07
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.43
Consensus pattern (21 bp):
TTACATTACTTATAAAATATA
Found at i:7811826 original size:18 final size:18
Alignment explanation
Indices: 7811800--7811890 Score: 96
Period size: 18 Copynumber: 4.9 Consensus size: 18
7811790 CATTACTTAC
7811800 ATTAC-TTACTAAAATAT
1 ATTACATTACTAAAATAT
*
7811817 ATTACATTACTTAAATAT
1 ATTACATTACTAAAATAT
*
7811835 ATTAC-TTACAAAAATTTAT
1 ATTACATTACTAAAA--TAT
*
7811854 AACTTACATTACTTAAATAT
1 -A-TTACATTACTAAAATAT
7811874 ATTACATTACTTAAAAT
1 ATTACATTAC-TAAAAT
7811891 TTATATATAT
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
17 12 0.20
18 25 0.41
19 9 0.15
20 4 0.07
21 4 0.07
22 7 0.11
ACGTcount: A:0.46, C:0.12, G:0.00, T:0.42
Consensus pattern (18 bp):
ATTACATTACTAAAATAT
Found at i:7811849 original size:17 final size:17
Alignment explanation
Indices: 7811800--7811861 Score: 70
Period size: 17 Copynumber: 3.6 Consensus size: 17
7811790 CATTACTTAC
*
7811800 ATTACTTACTAAAATAT
1 ATTACTTACAAAAATAT
**
7811817 ATTACATTACTTAAATAT
1 ATTAC-TTACAAAAATAT
*
7811835 ATTACTTACAAAAATTT
1 ATTACTTACAAAAATAT
*
7811852 ATAACTTACA
1 ATTACTTACA
7811862 TTACTTAAAT
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
17 23 0.59
18 16 0.41
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (17 bp):
ATTACTTACAAAAATAT
Found at i:7812190 original size:20 final size:19
Alignment explanation
Indices: 7812165--7812263 Score: 73
Period size: 20 Copynumber: 5.1 Consensus size: 19
7812155 ATAAACTTGC
7812165 ATAACTTACATAATAACATA
1 ATAACTTACATAAT-ACATA
7812185 ATAACTTACATAATACATAGCCTA
1 ATAACTTACATAATAC--A---TA
7812209 CATAACTTACATAATAC---
1 -ATAACTTACATAATACATA
* *
7812226 ACAACTTACAT-A-ACTTAA
1 ATAACTTACATAATACAT-A
7812244 ATAACTTACATAATACATA
1 ATAACTTACATAATACATA
7812263 A
1 A
7812264 CTTTGGTAAC
Statistics
Matches: 64, Mismatches: 3, Indels: 25
0.70 0.03 0.27
Matches are distributed among these distances:
14 2 0.03
15 1 0.02
16 10 0.16
18 10 0.16
19 5 0.08
20 17 0.27
21 1 0.02
24 2 0.03
25 16 0.25
ACGTcount: A:0.51, C:0.19, G:0.01, T:0.29
Consensus pattern (19 bp):
ATAACTTACATAATACATA
Found at i:7812215 original size:25 final size:25
Alignment explanation
Indices: 7812164--7812428 Score: 109
Period size: 25 Copynumber: 10.7 Consensus size: 25
7812154 TATAAACTTG
7812164 CATAACTTACATAATA-AC-A--TA
1 CATAACTTACATAATACACAACCTA
* *
7812185 -ATAACTTACATAATACATAGCCTA
1 CATAACTTACATAATACACAACCTA
*
7812209 CATAACTTACATAATACACAACTTA
1 CATAACTTACATAATACACAACCTA
* *
7812234 CATAACTTAAATAACTTACATAA--TA
1 CATAACTTACATAA--TACACAACCTA
*** ***
7812259 CATAACTTTGGTAACTA-ACATTATA
1 CATAACTTACATAA-TACACAACCTA
** ** *
7812284 CACGACTTACATAATACATTACTTA
1 CATAACTTACATAATACACAACCTA
* * * *
7812309 CTTAACATACATAACCTACATAACTTA
1 CATAACTTACATAA--TACACAACCTA
* * *
7812336 CATAA--TACACAACTTACATAACTTA
1 CATAACTTACATAA--TACACAACCTA
* * * *
7812361 AATAACTTACATAATACATAACTTT
1 CATAACTTACATAATACACAACCTA
* * * *
7812386 GATAACTAACATTATACACAACTTA
1 CATAACTTACATAATACACAACCTA
*
7812411 CATAGCTTACATAATACA
1 CATAACTTACATAATACA
7812429 TAACTTACCC
Statistics
Matches: 187, Mismatches: 43, Indels: 24
0.74 0.17 0.09
Matches are distributed among these distances:
20 15 0.08
21 1 0.01
23 2 0.01
24 6 0.03
25 137 0.73
27 26 0.14
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.31
Consensus pattern (25 bp):
CATAACTTACATAATACACAACCTA
Found at i:7812248 original size:34 final size:34
Alignment explanation
Indices: 7812210--7812384 Score: 127
Period size: 34 Copynumber: 4.7 Consensus size: 34
7812200 CATAGCCTAC
7812210 ATAACTTACATAATACACAACTTACATAACTTAA
1 ATAACTTACATAATACACAACTTACATAACTTAA
*
7812244 ATAACTTACATAATACATAACTTTGGTA-ACTAACATTATA
1 ATAACTTACATAATACACAAC--T--TACA-TAAC-TTA-A
** * * *
7812284 CACGACTTACATAATACATTACTTACTTAACATACATAACCTAC
1 -ATAACTTAC---ATA-A-TAC--AC--AACTTACATAACTTAA
7812328 ATAACTTACATAATACACAACTTACATAACTTAA
1 ATAACTTACATAATACACAACTTACATAACTTAA
*
7812362 ATAACTTACATAATACATAACTT
1 ATAACTTACATAATACACAACTT
7812385 TGATAACTAA
Statistics
Matches: 110, Mismatches: 13, Indels: 36
0.69 0.08 0.23
Matches are distributed among these distances:
34 55 0.50
36 3 0.03
37 1 0.01
38 9 0.08
39 4 0.04
40 4 0.04
41 7 0.06
43 7 0.06
44 3 0.03
45 3 0.03
46 9 0.08
47 1 0.01
48 1 0.01
50 3 0.03
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.31
Consensus pattern (34 bp):
ATAACTTACATAATACACAACTTACATAACTTAA
Found at i:7812254 original size:59 final size:59
Alignment explanation
Indices: 7812184--7812431 Score: 288
Period size: 59 Copynumber: 4.2 Consensus size: 59
7812174 ATAATAACAT
* *
7812184 AATAACTTACATAATACATAGCCTACATAACTTACATAATACACAACTTACATAACTTA
1 AATAACTTACATAATACATAACCTACATAACTAACATAATACACAACTTACATAACTTA
* *** * *
7812243 AATAACTTACATAATACATAACTTTGGTAACTAACATTATACACGACTTACATAA--TA
1 AATAACTTACATAATACATAACCTACATAACTAACATAATACACAACTTACATAACTTA
* * * *
7812300 CATTACTTACTTAACATACATAACCTACATAACTTACATAATACACAACTTACATAACTTA
1 AATAACTTACAT-A-ATACATAACCTACATAACTAACATAATACACAACTTACATAACTTA
* ** * *
7812361 AATAACTTACATAATACATAACTTTGATAACTAACATTATACACAACTTACATAGCTTA
1 AATAACTTACATAATACATAACCTACATAACTAACATAATACACAACTTACATAACTTA
*
7812420 CATAA--TACATAA
1 AATAACTTACATAA
7812432 CTTACCCGTG
Statistics
Matches: 157, Mismatches: 28, Indels: 10
0.81 0.14 0.05
Matches are distributed among these distances:
57 18 0.11
58 1 0.01
59 126 0.80
60 1 0.01
61 11 0.07
ACGTcount: A:0.46, C:0.21, G:0.02, T:0.31
Consensus pattern (59 bp):
AATAACTTACATAATACATAACCTACATAACTAACATAATACACAACTTACATAACTTA
Found at i:7817455 original size:42 final size:43
Alignment explanation
Indices: 7817396--7817710 Score: 399
Period size: 42 Copynumber: 7.3 Consensus size: 43
7817386 GTTTGTGAAA
**
7817396 TAAGCGCCGCTAAAGAACACT-A-CTATTAGCGGCGTTTTTGACC
1 TAAGCGCCGCTAAAGAACA-TGATCT-TTAGCGGCGTTTTTTTCC
* * *
7817439 -AAGCGCCGCTATAGAACATTA-CTTTTAGCGGCGTTTTCTTCC
1 TAAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTTTTTCC
*
7817481 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGC-ATTTTTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCC
* *
7817523 CAAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGC-GTTTTTTTCC
* * *
7817567 TAAGCGCCGCTAAAGAACATGATCTGTAACGGCG-TTTTTTCA
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCC
*
7817609 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCC
* * *
7817652 TTAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTTCTA
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTC-C
*
7817696 TAAGCGCCGCAAAAG
1 TAAGCGCCGCTAAAG
7817711 TTAGCGACAT
Statistics
Matches: 239, Mismatches: 25, Indels: 15
0.86 0.09 0.05
Matches are distributed among these distances:
41 1 0.00
42 112 0.47
43 74 0.31
44 52 0.22
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (43 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTTCC
Found at i:7817485 original size:85 final size:83
Alignment explanation
Indices: 7817396--7817690 Score: 380
Period size: 85 Copynumber: 3.5 Consensus size: 83
7817386 GTTTGTGAAA
* *
7817396 TAAGCGCCGCTAAAGAACACT-A-CTATTAGCGGCGTTTTTGACCAAGCGCCGCTATAGAACATT
1 TAAGCGCCGCTAAAGAACA-TGATCT-TTAGCGGCGTTTTT-ACCAAGCGCCGCTAAAGAACATG
7817459 A-CTTTTAGCGGCGTTTTCTTCC
63 ATC-TTTAGCGGCGTTTT-TTCC
* *
7817481 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTTTCCCAAGCGCCGCTAAAGAACATGAT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGC-GTTTTTACCAAGCGCCGCTAAAGAACATGAT
*
7817546 CTTTAGCGGCATTTTTTTTCC
65 CTTTAGCGGC--GTTTTTTCC
* * * *
7817567 TAAGCGCCGCTAAAGAACATGATCTGTAACGGCGTTTTTTCATAAGCGCCGCTAAAGAACATGAT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTAC-CAAGCGCCGCTAAAGAACATGAT
7817632 CTTTAGCGGCGTTTATTTCC
65 CTTTAGCGGCGTTT-TTTCC
* *
7817652 TTAGCGCCGCTAAAGAACATGATCTTTAGCGGCATTTTT
1 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTT
7817691 TTCTATAAGC
Statistics
Matches: 187, Mismatches: 15, Indels: 16
0.86 0.07 0.07
Matches are distributed among these distances:
84 4 0.02
85 104 0.56
86 75 0.40
87 4 0.02
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.31
Consensus pattern (83 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTACCAAGCGCCGCTAAAGAACATGATC
TTTAGCGGCGTTTTTTCC
Found at i:7820907 original size:25 final size:25
Alignment explanation
Indices: 7820879--7820947 Score: 93
Period size: 27 Copynumber: 2.7 Consensus size: 25
7820869 CCCTATATAT
*
7820879 GGCTCTTCGGAGCTTTCCGATTAAA
1 GGCTCTTCGGAGCTTCCCGATTAAA
* *
7820904 GGCTCTTTCATGAGCTTCCCGATTAAC
1 GGCTC-TTC-GGAGCTTCCCGATTAAA
7820931 GGCTCTTCGGAGCTTCC
1 GGCTCTTCGGAGCTTCC
7820948 TCATATTGCC
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
25 13 0.34
26 6 0.16
27 19 0.50
ACGTcount: A:0.16, C:0.29, G:0.23, T:0.32
Consensus pattern (25 bp):
GGCTCTTCGGAGCTTCCCGATTAAA
Found at i:7823042 original size:38 final size:41
Alignment explanation
Indices: 7822992--7823080 Score: 103
Period size: 38 Copynumber: 2.2 Consensus size: 41
7822982 TAAGTGTATT
* *
7822992 TTATTATAAAACTCAAA-GTTAA-AATATATATTATA-ATA
1 TTATAATAAAACTCAAATATTAATAATATATATTATATATA
* *
7823030 TTATAATAAAACTTAAATATTAATTATATATATTATATTATA
1 TTATAATAAAACTCAAATATTAATAATATATATTATA-TATA
*
7823072 TTAAAATAA
1 TTATAATAA
7823081 TTAAGAAAGA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
38 15 0.36
39 4 0.10
40 12 0.29
42 11 0.26
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.43
Consensus pattern (41 bp):
TTATAATAAAACTCAAATATTAATAATATATATTATATATA
Found at i:7823104 original size:12 final size:12
Alignment explanation
Indices: 7823083--7823152 Score: 69
Period size: 12 Copynumber: 6.1 Consensus size: 12
7823073 TAAAATAATT
*
7823083 AAGAAAGAGAAA
1 AAGAAGGAGAAA
7823095 AAGAAGGAGAAA
1 AAGAAGGAGAAA
7823107 AAGAAGGAGAGAA
1 AAGAAGGAGA-AA
*
7823120 AGGAA--AGAAA
1 AAGAAGGAGAAA
7823130 AAG-A-GA-AAGA
1 AAGAAGGAGAA-A
7823140 AAGAAGGAGAAA
1 AAGAAGGAGAAA
7823152 A
1 A
7823153 GTTAGGGTTT
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
9 3 0.06
10 9 0.18
11 4 0.08
12 25 0.51
13 8 0.16
ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00
Consensus pattern (12 bp):
AAGAAGGAGAAA
Found at i:7823128 original size:17 final size:17
Alignment explanation
Indices: 7823106--7823153 Score: 64
Period size: 17 Copynumber: 2.9 Consensus size: 17
7823096 AGAAGGAGAA
7823106 AAAGAAGGAGAGAAAGG
1 AAAGAAGGAGAGAAAGG
**
7823123 AAAGAAAAAGAGAAA-G
1 AAAGAAGGAGAGAAAGG
7823139 AAAGAAGGAGA-AAAG
1 AAAGAAGGAGAGAAAG
7823154 TTAGGGTTTC
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 3 0.12
16 10 0.38
17 13 0.50
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (17 bp):
AAAGAAGGAGAGAAAGG
Found at i:7824093 original size:37 final size:38
Alignment explanation
Indices: 7824003--7824105 Score: 111
Period size: 37 Copynumber: 2.7 Consensus size: 38
7823993 CTTCGAGTCA
*
7824003 ATGAGACACTGGGTGTCAATTTATTACTTCGGATTAATTCG
1 ATGAGACACTGGGTGTCAATTTA-T--TTCGGATTAACTCG
* * *
7824044 ATGACG-CACTGGGTGCCAATTTATTTCGGTTTAGCT-G
1 ATGA-GACACTGGGTGTCAATTTATTTCGGATTAACTCG
*
7824081 ATGAGACACTGGGTTTCAATTTATT
1 ATGAGACACTGGGTGTCAATTTATT
7824106 ACTTCGAATT
Statistics
Matches: 54, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
36 1 0.02
37 22 0.41
38 9 0.17
40 1 0.02
41 20 0.37
42 1 0.02
ACGTcount: A:0.24, C:0.16, G:0.23, T:0.37
Consensus pattern (38 bp):
ATGAGACACTGGGTGTCAATTTATTTCGGATTAACTCG
Found at i:7824132 original size:40 final size:40
Alignment explanation
Indices: 7824003--7824134 Score: 137
Period size: 40 Copynumber: 3.4 Consensus size: 40
7823993 CTTCGAGTCA
*
7824003 ATGAGACACTGGGTGTCAATTTATTACTTCGGATTAAT-TCG
1 ATGAGGCACTGGGTGTCAATTTATTACTTCGGATT-ATCT-G
* * * *
7824044 ATGACGCACTGGGTGCCAATTTA-T--TTCGGTTTAGCTG
1 ATGAGGCACTGGGTGTCAATTTATTACTTCGGATTATCTG
* * *
7824081 ATGAGACACTGGGTTTCAATTTATTACTTCGAATTATCTG
1 ATGAGGCACTGGGTGTCAATTTATTACTTCGGATTATCTG
*
7824121 ATGAGGTACTGGGT
1 ATGAGGCACTGGGT
7824135 ACCAAACTAG
Statistics
Matches: 73, Mismatches: 14, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
37 21 0.29
38 9 0.12
40 23 0.32
41 20 0.27
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.36
Consensus pattern (40 bp):
ATGAGGCACTGGGTGTCAATTTATTACTTCGGATTATCTG
Found at i:7824325 original size:21 final size:22
Alignment explanation
Indices: 7824300--7824342 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
7824290 AGCTATTTGT
*
7824300 ATAGCAAGT-ATGAGATTTGAA
1 ATAGCAAGTGATGAGAATTGAA
7824321 ATAGCAAGTGATGAGAATTGAA
1 ATAGCAAGTGATGAGAATTGAA
7824343 TATGTTATGA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 9 0.45
22 11 0.55
ACGTcount: A:0.44, C:0.05, G:0.26, T:0.26
Consensus pattern (22 bp):
ATAGCAAGTGATGAGAATTGAA
Found at i:7829285 original size:32 final size:32
Alignment explanation
Indices: 7829223--7829285 Score: 76
Period size: 32 Copynumber: 2.0 Consensus size: 32
7829213 CATTATCATA
* *
7829223 ATAACTTTATAATATAGTATAATATATATATT
1 ATAACTTTATAATATAATATAATAAATATATT
7829255 ATAAGCTTTATAA-ATAATATAA-AAACTATAT
1 ATAA-CTTTATAATATAATATAATAAA-TATAT
7829286 ATATTATAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
31 2 0.07
32 17 0.63
33 8 0.30
ACGTcount: A:0.51, C:0.05, G:0.03, T:0.41
Consensus pattern (32 bp):
ATAACTTTATAATATAATATAATAAATATATT
Found at i:7830591 original size:489 final size:489
Alignment explanation
Indices: 7829673--7830649 Score: 1882
Period size: 489 Copynumber: 2.0 Consensus size: 489
7829663 TTCTAACTCC
7829673 CAAGTTGCTTCTTCAACTCCGTGTTTATGTCACAATACTTTAACTGACAAAATTTTCTTATTTCG
1 CAAGTTGCTTCTTCAACTCCGTGTTTATGTCACAATACTTTAACTGACAAAATTTTCTTATTTCG
*
7829738 TAATTCTTCGATCTCACGAGCCAGAATGCTAATCGGTTCTTCTTCATATGACATATTAGTGTTAA
66 TAATTCTTCGATCTCACGAGCCAGAATGCTAATCGGTTCTTCTTCATATGACATATTAGAGTTAA
7829803 TTTCAATCTCTGTCGGACTAATCACATGTGAAGGATCGGATCTGTATCTACAAAGCATCGAAACA
131 TTTCAATCTCTGTCGGACTAATCACATGTGAAGGATCGGATCTGTATCTACAAAGCATCGAAACA
* *
7829868 TGGAATACATTGTGAATCTTTTCTAACTCAGATGGCAGCAACAATTTATATGCAACTAGCCCGAT
196 TGGAATACATTGTGAATCTTTTCTAACTCAGATGGCAACAACAATTTATATGCAACCAGCCCGAT
7829933 ACGCTTTATAATCTCATACGGTCCAATGAATCTCGGACTTAATTTACCTTTGCGACCAAATTTGA
261 ACGCTTTATAATCTCATACGGTCCAATGAATCTCGGACTTAATTTACCTTTGCGACCAAATTTGA
7829998 GTATTTTCTTCCACGGTGAGACTTTCAAAAACACTTTGTTCCCGATCTGAAATTCTATATCCTTT
326 GTATTTTCTTCCACGGTGAGACTTTCAAAAACACTTTGTTCCCGATCTGAAATTCTATATCCTTT
*
7830063 CTTTTCAAATCCGCATAAGATTTCTGACGATCCGATGCTTTTTCAGACTGTCCCGACTCACTTTC
391 CTTTTCAAATCCGCATAAGATTTCTGACGATCCGATGCTTTTTCAGACTGTCCCGAATCACTTTC
*
7830128 ACTTTTTGTTCAGTCTCTTTAACCAAATCGACCT
456 ACTTTTTATTCAGTCTCTTTAACCAAATCGACCT
*
7830162 CAAGTTGCTTCTTCAACTCTGTGTTTATGTCACAATACTTTAACTGACAAAATTTTCTTATTTCG
1 CAAGTTGCTTCTTCAACTCCGTGTTTATGTCACAATACTTTAACTGACAAAATTTTCTTATTTCG
7830227 TAATTCTTCGATCTCACGAGCCAGAATGCTAATCGGTTCTTCTTCATATGACATATTAGAGTTAA
66 TAATTCTTCGATCTCACGAGCCAGAATGCTAATCGGTTCTTCTTCATATGACATATTAGAGTTAA
7830292 TTTCAATCTCTGTCGGACTAATCACATGTGAAGGATCGGATCTGTATCTACAAAGCATCGAAACA
131 TTTCAATCTCTGTCGGACTAATCACATGTGAAGGATCGGATCTGTATCTACAAAGCATCGAAACA
7830357 TGGAATACATTGTGAATCTTTTCTAACTCAGATGGCAACAACAATTTATATGCAACCAGCCCGAT
196 TGGAATACATTGTGAATCTTTTCTAACTCAGATGGCAACAACAATTTATATGCAACCAGCCCGAT
7830422 ACGCTTTATAATCTCATACGGTCCAATGAATCTCGGACTTAATTTACCTTTGCGACCAAATTTGA
261 ACGCTTTATAATCTCATACGGTCCAATGAATCTCGGACTTAATTTACCTTTGCGACCAAATTTGA
7830487 GTATTTTCTTCCACGGTGAGACTTTCAAAAACACTTTGTTCCCGATCTGAAATTCTATATCCTTT
326 GTATTTTCTTCCACGGTGAGACTTTCAAAAACACTTTGTTCCCGATCTGAAATTCTATATCCTTT
* *
7830552 CTTTTCAAATTCGCATAGGATTTCTGACGATCCGATGCTTTTTCAGACTGTCCCGAATCACTTTC
391 CTTTTCAAATCCGCATAAGATTTCTGACGATCCGATGCTTTTTCAGACTGTCCCGAATCACTTTC
7830617 ACTTTTTATTCAGTCTCTTTAACCAAATCGACC
456 ACTTTTTATTCAGTCTCTTTAACCAAATCGACC
7830650 CCGTGTATCT
Statistics
Matches: 480, Mismatches: 8, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
489 480 1.00
ACGTcount: A:0.28, C:0.23, G:0.14, T:0.36
Consensus pattern (489 bp):
CAAGTTGCTTCTTCAACTCCGTGTTTATGTCACAATACTTTAACTGACAAAATTTTCTTATTTCG
TAATTCTTCGATCTCACGAGCCAGAATGCTAATCGGTTCTTCTTCATATGACATATTAGAGTTAA
TTTCAATCTCTGTCGGACTAATCACATGTGAAGGATCGGATCTGTATCTACAAAGCATCGAAACA
TGGAATACATTGTGAATCTTTTCTAACTCAGATGGCAACAACAATTTATATGCAACCAGCCCGAT
ACGCTTTATAATCTCATACGGTCCAATGAATCTCGGACTTAATTTACCTTTGCGACCAAATTTGA
GTATTTTCTTCCACGGTGAGACTTTCAAAAACACTTTGTTCCCGATCTGAAATTCTATATCCTTT
CTTTTCAAATCCGCATAAGATTTCTGACGATCCGATGCTTTTTCAGACTGTCCCGAATCACTTTC
ACTTTTTATTCAGTCTCTTTAACCAAATCGACCT
Found at i:7843129 original size:23 final size:23
Alignment explanation
Indices: 7843102--7843147 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7843092 ATTCATACTT
7843102 ATTTTCTGAAAT-TATAAATAAAC
1 ATTTT-TGAAATATATAAATAAAC
**
7843125 ATTTTTTTAATATATAAATAAAC
1 ATTTTTGAAATATATAAATAAAC
7843148 TCATAATGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 4 0.20
23 16 0.80
ACGTcount: A:0.48, C:0.07, G:0.02, T:0.43
Consensus pattern (23 bp):
ATTTTTGAAATATATAAATAAAC
Found at i:7847659 original size:18 final size:18
Alignment explanation
Indices: 7847633--7847668 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7847623 GGTGCTGGTA
*
7847633 GGGATTGTAATGAGGGTG
1 GGGAGTGTAATGAGGGTG
7847651 GGGAGTGTAATGAGGGTG
1 GGGAGTGTAATGAGGGTG
7847669 AAGGTGTTGG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.22, C:0.00, G:0.53, T:0.25
Consensus pattern (18 bp):
GGGAGTGTAATGAGGGTG
Found at i:7854013 original size:17 final size:17
Alignment explanation
Indices: 7853901--7854011 Score: 57
Period size: 16 Copynumber: 6.2 Consensus size: 17
7853891 CTAAAAATGT
*
7853901 TATACAAATTTATAAAAA
1 TATA-AAATTTTTAAAAA
* *
7853919 TAATAAAA-ATATAAAACA
1 T-ATAAAATTTTTAAAA-A
*
7853937 TATTTAAAATTTTATATAAACT
1 TA--TAAAATTTT-TA-AAA-A
*
7853959 TATAAAATTATTAAAAA
1 TATAAAATTTTTAAAAA
* *
7853976 -ATAAAAATTCTAAAAA
1 TATAAAATTTTTAAAAA
*
7853992 T-TATAATTTTTAAAAA
1 TATAAAATTTTTAAAAA
7854008 TATA
1 TATA
7854012 TATTATAAAA
Statistics
Matches: 72, Mismatches: 12, Indels: 19
0.70 0.12 0.18
Matches are distributed among these distances:
16 26 0.36
17 10 0.14
18 9 0.12
19 10 0.14
20 9 0.12
21 2 0.03
22 6 0.08
ACGTcount: A:0.59, C:0.04, G:0.00, T:0.37
Consensus pattern (17 bp):
TATAAAATTTTTAAAAA
Found at i:7854560 original size:9 final size:9
Alignment explanation
Indices: 7854497--7854587 Score: 71
Period size: 9 Copynumber: 10.0 Consensus size: 9
7854487 AATGACTTTA
7854497 TATAATTTT
1 TATAATTTT
7854506 TAT-A-TTT
1 TATAATTTT
7854513 TATAA-TTT
1 TATAATTTT
*
7854521 TACAATTTAT
1 TATAATTT-T
*
7854531 TAAAATTTT
1 TATAATTTT
*
7854540 CTATAAATTT
1 -TATAATTTT
*
7854550 TATAATATT
1 TATAATTTT
7854559 TATAAGTTTT
1 TATAA-TTTT
*
7854569 AATTAATTTT
1 TA-TAATTTT
*
7854579 GATAATTTT
1 TATAATTTT
7854588 ACATAAAATT
Statistics
Matches: 67, Mismatches: 9, Indels: 12
0.76 0.10 0.14
Matches are distributed among these distances:
7 6 0.09
8 9 0.13
9 25 0.37
10 24 0.36
11 3 0.04
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.58
Consensus pattern (9 bp):
TATAATTTT
Found at i:7854568 original size:18 final size:17
Alignment explanation
Indices: 7854497--7854588 Score: 71
Period size: 19 Copynumber: 5.1 Consensus size: 17
7854487 AATGACTTTA
7854497 TATAATTTTTAT-ATTT
1 TATAATTTTTATAATTT
*
7854513 TATAA-TTTTACAATTTAT
1 TATAATTTTTATAA-TT-T
*
7854531 TAAAATTTTCTATAAATTT
1 TATAATTTT-TAT-AATTT
*
7854550 TATAATATTTATAAGTTT
1 TATAATTTTTATAA-TTT
*
7854568 TAATTAATTTTGATAATTT
1 T-A-TAATTTTTATAATTT
7854587 TA
1 TA
7854589 CATAAAATTT
Statistics
Matches: 60, Mismatches: 7, Indels: 16
0.72 0.08 0.19
Matches are distributed among these distances:
15 5 0.08
16 6 0.10
17 4 0.07
18 13 0.22
19 16 0.27
20 14 0.23
21 2 0.03
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (17 bp):
TATAATTTTTATAATTT
Found at i:7854586 original size:37 final size:36
Alignment explanation
Indices: 7854498--7854588 Score: 98
Period size: 37 Copynumber: 2.5 Consensus size: 36
7854488 ATGACTTTAT
*
7854498 ATAATTTTTAT-ATTTTATAATTTTACAATTTATTA
1 ATAATTTTTATAATTTTATAATTTTACAAGTTATTA
*
7854533 A-AATTTTCTATAAATTTTATAATATTTATAAGTT-TTA
1 ATAATTTT-TAT-AATTTTATAAT-TTTACAAGTTATTA
*
7854570 ATTAATTTTGATAATTTTA
1 A-TAATTTTTATAATTTTA
7854589 CATAAAATTT
Statistics
Matches: 47, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
34 6 0.13
35 4 0.09
37 21 0.45
38 10 0.21
39 6 0.13
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.57
Consensus pattern (36 bp):
ATAATTTTTATAATTTTATAATTTTACAAGTTATTA
Found at i:7854724 original size:9 final size:9
Alignment explanation
Indices: 7854709--7854823 Score: 56
Period size: 9 Copynumber: 12.2 Consensus size: 9
7854699 AGTTCATATA
7854709 AATTTTTAT
1 AATTTTTAT
*
7854718 TATTTTTAGT
1 AATTTTTA-T
*
7854728 CATTTTTAT
1 AATTTTTAT
*
7854737 AATTTTCAT
1 AATTTTTAT
7854746 --TTTTTAAT
1 AATTTTT-AT
**
7854754 AAACTTTAT
1 AATTTTTAT
*
7854763 AAGTTTATAT
1 AA-TTTTTAT
* *
7854773 AACATTTTAA
1 AA-TTTTTAT
7854783 AATTTTTAAT
1 AATTTTT-AT
7854793 ATATATTTTA-
1 A-AT-TTTTAT
7854803 AATTTTTTAT
1 AA-TTTTTAT
*
7854813 GATTTTTAT
1 AATTTTTAT
7854822 AA
1 AA
7854824 GGAAAATAAA
Statistics
Matches: 78, Mismatches: 18, Indels: 20
0.67 0.16 0.17
Matches are distributed among these distances:
7 4 0.05
8 2 0.03
9 37 0.47
10 28 0.36
11 3 0.04
12 4 0.05
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (9 bp):
AATTTTTAT
Found at i:7854790 original size:21 final size:22
Alignment explanation
Indices: 7854766--7854812 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 22
7854756 ACTTTATAAG
7854766 TTTATATA-ACATTTTAAAATT
1 TTTATATATACATTTTAAAATT
* *
7854787 TTTA-ATATATATTTTAAATTT
1 TTTATATATACATTTTAAAATT
7854808 TTTAT
1 TTTAT
7854813 GATTTTTATA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
20 3 0.14
21 19 0.86
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (22 bp):
TTTATATATACATTTTAAAATT
Found at i:7858899 original size:21 final size:21
Alignment explanation
Indices: 7858859--7858899 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
7858849 AACCTTCACA
* *
7858859 AAGTAAGTTTTTATTTTTATG
1 AAGTAAGTTTTTACTATTATG
*
7858880 AAGTAATTTTTTACTATTAT
1 AAGTAAGTTTTTACTATTAT
7858900 TTTCGCATTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.32, C:0.02, G:0.10, T:0.56
Consensus pattern (21 bp):
AAGTAAGTTTTTACTATTATG
Found at i:7863197 original size:3 final size:3
Alignment explanation
Indices: 7863189--7863229 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
7863179 TAATTATCAC
7863189 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
7863230 AAAAGATGTG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:7866064 original size:3 final size:3
Alignment explanation
Indices: 7866058--7866087 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
7866048 TTGGAAGCTT
7866058 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7866088 ATGTTTGCTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:7867375 original size:16 final size:17
Alignment explanation
Indices: 7867344--7867376 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7867334 GTAAATGAAC
7867344 TTTTTCGGACTGTTTAA
1 TTTTTCGGACTGTTTAA
*
7867361 TTTTTGGGACT-TTTAA
1 TTTTTCGGACTGTTTAA
7867377 ATCTCCGTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.18, C:0.09, G:0.18, T:0.55
Consensus pattern (17 bp):
TTTTTCGGACTGTTTAA
Found at i:7869624 original size:27 final size:27
Alignment explanation
Indices: 7869565--7869624 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
7869555 AACCCACCTT
* * *
7869565 TAGTGCAG-TTTCATTCTTTCAATACC
1 TAGTACAGTTTTCATTCATTCAATACA
*
7869591 TAGTACAGTTTTCGTTCATTCAATACA
1 TAGTACAGTTTTCATTCATTCAATACA
*
7869618 TATTACA
1 TAGTACA
7869625 TTAAATTCAC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.42
Consensus pattern (27 bp):
TAGTACAGTTTTCATTCATTCAATACA
Found at i:7874780 original size:27 final size:27
Alignment explanation
Indices: 7874729--7874780 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
7874719 CTTGGTGCAG
* *
7874729 TTTCATTCTTTCAATACCTAGTACAAT
1 TTTCATTCATTCAATACATAGTACAAT
* *
7874756 TTTCGTTCATTCAATACATATTACA
1 TTTCATTCATTCAATACATAGTACA
7874781 TTAAACTCAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.31, C:0.21, G:0.04, T:0.44
Consensus pattern (27 bp):
TTTCATTCATTCAATACATAGTACAAT
Found at i:7901039 original size:16 final size:16
Alignment explanation
Indices: 7901015--7901053 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
7901005 GCCCGGGCCC
*
7901015 AAAAAAACA-AATAAT
1 AAAAAAACATAAAAAT
7901030 AAATAAAACATAAAAAT
1 AAA-AAAACATAAAAAT
7901047 AAAAAAA
1 AAAAAAA
7901054 GCCCAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
15 3 0.14
16 10 0.48
17 8 0.38
ACGTcount: A:0.82, C:0.05, G:0.00, T:0.13
Consensus pattern (16 bp):
AAAAAAACATAAAAAT
Found at i:7902172 original size:10 final size:10
Alignment explanation
Indices: 7902157--7902192 Score: 58
Period size: 10 Copynumber: 3.8 Consensus size: 10
7902147 AAAGTGCTCT
7902157 TTTATTATAA
1 TTTATTATAA
7902167 TTTATTATAA
1 TTTATTATAA
7902177 TTT-TTAT-A
1 TTTATTATAA
7902185 TTTATTAT
1 TTTATTAT
7902193 TTATTTGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
8 4 0.16
9 8 0.32
10 13 0.52
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (10 bp):
TTTATTATAA
Found at i:7902320 original size:24 final size:22
Alignment explanation
Indices: 7902282--7902338 Score: 78
Period size: 23 Copynumber: 2.5 Consensus size: 22
7902272 TTCAAATTTA
*
7902282 TATATATATTTAAAAACTGTTT
1 TATATTTATTTAAAAACTGTTT
*
7902304 TATATGTTATTTAAAAACTTTTT
1 TATAT-TTATTTAAAAACTGTTT
7902327 TATTATTTATTT
1 TA-TATTTATTT
7902339 TGAATTGTCC
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
22 5 0.16
23 23 0.74
24 3 0.10
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.58
Consensus pattern (22 bp):
TATATTTATTTAAAAACTGTTT
Found at i:7905100 original size:27 final size:28
Alignment explanation
Indices: 7905052--7905119 Score: 95
Period size: 27 Copynumber: 2.5 Consensus size: 28
7905042 AAATAAAAAA
*
7905052 TTACCAAAATAT-TATAACTTTTTTTAT
1 TTACCAAAATATATATAACTTTTATTAT
* *
7905079 TTACCAAAAAATATAT-ATTTTTATTAT
1 TTACCAAAATATATATAACTTTTATTAT
7905106 TTACCAAAATATAT
1 TTACCAAAATATAT
7905120 CAAAAAAAAC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
27 33 0.92
28 3 0.08
ACGTcount: A:0.43, C:0.10, G:0.00, T:0.47
Consensus pattern (28 bp):
TTACCAAAATATATATAACTTTTATTAT
Found at i:7905213 original size:27 final size:27
Alignment explanation
Indices: 7905183--7905246 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
7905173 CGCCAATGGG
7905183 ATTGGCGGCACCAAAGGTGCCAA-AGCC
1 ATTGGCGGCACCAAAGGTGCCAATA-CC
*
7905210 ATTGGCGGCACCAATGGTGCCAATACC
1 ATTGGCGGCACCAAAGGTGCCAATACC
7905237 ATTGGCGGCA
1 ATTGGCGGCA
7905247 GCAAGTATAT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
27 34 0.97
28 1 0.03
ACGTcount: A:0.27, C:0.28, G:0.30, T:0.16
Consensus pattern (27 bp):
ATTGGCGGCACCAAAGGTGCCAATACC
Found at i:7905301 original size:4 final size:4
Alignment explanation
Indices: 7905292--7905398 Score: 103
Period size: 4 Copynumber: 26.0 Consensus size: 4
7905282 GAAGGTGAGG
*
7905292 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA TGAGAG GAAA GAAA
1 GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA GAAA -GA-AA GAAA GAAA
* *
7905342 G-AA -AAA GAAG GAAA GAAAA GGAAA G-GA GAAGA GAAAA GAAA GAAA
1 GAAA GAAA GAAA GAAA G-AAA -GAAA GAAA GAA-A G-AAA GAAA GAAA
*
7905387 GAAG GAAA GAAA
1 GAAA GAAA GAAA
7905399 AGGAAAGGAG
Statistics
Matches: 86, Mismatches: 8, Indels: 18
0.77 0.07 0.16
Matches are distributed among these distances:
3 6 0.07
4 62 0.72
5 14 0.16
6 4 0.05
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (4 bp):
GAAA
Done.