Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 30 of 173
Found at i:7905416 original size:75 final size:70
Alignment explanation
Indices: 7905291--7905462 Score: 179
Period size: 75 Copynumber: 2.3 Consensus size: 70
7905281 AGAAGGTGAG
7905291 GGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAATGAGAGGAAAGAAAGAAAAAGAAGGAAA
1 GGAAAG-AA-AAAGAAAGAAAGAAAGAAAGAAAGAAATGAGAGGAAAGAAA-AAAAAGAA-G-AA
7905356 GAAAAGGAAA
61 GAAAAGGAAA
*
7905366 GGAGAAGAGAAAAGAAAGAAAGAAGGAAAGAAAAGGAAA-G-GA-GAAGAGAAAAAAAAGAAGAA
1 GGA-AAGA-AAAAGAAAGAAAGAAAGAAAG-AAA-GAAATGAGAGGAA-AGAAAAAAAAGAAGAA
* *
7905428 GAAGAGGGAA
61 GAAAAGGAAA
*
7905438 GGAAGGAAAAAGAAAAGAAAAGAAA
1 GGAAAGAAAAAG-AAAG-AAAGAAA
7905463 AGGTAATTTT
Statistics
Matches: 85, Mismatches: 5, Indels: 17
0.79 0.05 0.16
Matches are distributed among these distances:
70 5 0.06
71 7 0.08
72 19 0.22
73 1 0.01
74 11 0.13
75 30 0.35
76 8 0.09
77 4 0.05
ACGTcount: A:0.68, C:0.00, G:0.31, T:0.01
Consensus pattern (70 bp):
GGAAAGAAAAAGAAAGAAAGAAAGAAAGAAAGAAATGAGAGGAAAGAAAAAAAAGAAGAAGAAAA
GGAAA
Found at i:7905422 original size:27 final size:26
Alignment explanation
Indices: 7905392--7905459 Score: 68
Period size: 27 Copynumber: 2.5 Consensus size: 26
7905382 AGAAAGAAGG
7905392 AAAGAAAAGGAAAGGAGAAGAGAA-AAA
1 AAAGAAAAGGAAAGG-GAAG-GAAGAAA
*
7905419 AAAGAAGAA-GAAGAGGGAAGGAAGGAA
1 AAAGAA-AAGGAA-AGGGAAGGAAGAAA
*
7905446 AAAGAAAAGAAAAG
1 AAAGAAAAGGAAAG
7905460 AAAAGGTAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
26 7 0.20
27 23 0.66
28 5 0.14
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (26 bp):
AAAGAAAAGGAAAGGGAAGGAAGAAA
Found at i:7910974 original size:18 final size:18
Alignment explanation
Indices: 7910951--7910988 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
7910941 ATCCCAATGA
7910951 TCGCCACCACCTTCTTCT
1 TCGCCACCACCTTCTTCT
*
7910969 TCGCCAGCACCTTCTTCT
1 TCGCCACCACCTTCTTCT
7910987 TC
1 TC
7910989 ACCATCAACC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.11, C:0.47, G:0.08, T:0.34
Consensus pattern (18 bp):
TCGCCACCACCTTCTTCT
Found at i:7911599 original size:15 final size:12
Alignment explanation
Indices: 7911567--7911592 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
7911557 AATTTATAGT
7911567 CAAAATAATACA
1 CAAAATAATACA
7911579 CAAAATAATACA
1 CAAAATAATACA
7911591 CA
1 CA
7911593 CTAAAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.65, C:0.19, G:0.00, T:0.15
Consensus pattern (12 bp):
CAAAATAATACA
Found at i:7911728 original size:3 final size:3
Alignment explanation
Indices: 7911720--7911757 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
7911710 TCTTAATACT
7911720 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
1 AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AAC AA
7911758 TAATAATAAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.68, C:0.32, G:0.00, T:0.00
Consensus pattern (3 bp):
AAC
Found at i:7911845 original size:19 final size:21
Alignment explanation
Indices: 7911823--7911861 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
7911813 TAAAACAAAA
*
7911823 AAAAT-ATTACAA-AATATAC
1 AAAATAATAACAACAATATAC
7911842 AAAATAATAACAACAATATA
1 AAAATAATAACAACAATATA
7911862 ATCAATTATT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 5 0.29
20 6 0.35
21 6 0.35
ACGTcount: A:0.67, C:0.10, G:0.00, T:0.23
Consensus pattern (21 bp):
AAAATAATAACAACAATATAC
Found at i:7911925 original size:10 final size:11
Alignment explanation
Indices: 7911885--7911924 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
7911875 AAAAAAATAC
7911885 CTTCTTTTTCT
1 CTTCTTTTTCT
*
7911896 CCTCTTTTTCT
1 CTTCTTTTTCT
7911907 C-TCTTTTTCT
1 CTTCTTTTTCT
7911917 CTTCTTTT
1 CTTCTTTT
7911925 CCGCAGTAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
10 10 0.37
11 17 0.63
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (11 bp):
CTTCTTTTTCT
Found at i:7912053 original size:27 final size:27
Alignment explanation
Indices: 7912007--7912094 Score: 108
Period size: 27 Copynumber: 3.3 Consensus size: 27
7911997 AATACGAGTA
7912007 GTGCCGCCAAT--CAATATGGCACCATTG
1 GTGCCGCCAATGGC-AT-TGGCACCATTG
*
7912034 GTGCCGTCAATGGCATTGGCACCATTG
1 GTGCCGCCAATGGCATTGGCACCATTG
** *
7912061 GTGCCGCCAATGGTTTTGGCACCTTTG
1 GTGCCGCCAATGGCATTGGCACCATTG
7912088 GTGCCGC
1 GTGCCGC
7912095 TAATCCCATT
Statistics
Matches: 54, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
27 51 0.94
28 2 0.04
29 1 0.02
ACGTcount: A:0.17, C:0.28, G:0.28, T:0.26
Consensus pattern (27 bp):
GTGCCGCCAATGGCATTGGCACCATTG
Found at i:7912106 original size:27 final size:27
Alignment explanation
Indices: 7912023--7912107 Score: 100
Period size: 27 Copynumber: 3.1 Consensus size: 27
7912013 CCAATCAATA
7912023 TGGCACCATTGGTGCCG-TCAATGGCAT
1 TGGCACCATTGGTGCCGCT-AATGGCAT
* **
7912050 TGGCACCATTGGTGCCGCCAATGGTTT
1 TGGCACCATTGGTGCCGCTAATGGCAT
* **
7912077 TGGCACCTTTGGTGCCGCTAATCCCAT
1 TGGCACCATTGGTGCCGCTAATGGCAT
7912104 TGGC
1 TGGC
7912108 GTGACCAGTG
Statistics
Matches: 48, Mismatches: 9, Indels: 2
0.81 0.15 0.03
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.15, C:0.28, G:0.28, T:0.28
Consensus pattern (27 bp):
TGGCACCATTGGTGCCGCTAATGGCAT
Found at i:7912201 original size:27 final size:29
Alignment explanation
Indices: 7912166--7912235 Score: 101
Period size: 28 Copynumber: 2.5 Consensus size: 29
7912156 TTTATTTTTT
7912166 TATATATTTTGGTAAAT-AAAAAAA-TTA
1 TATATATTTTGGTAAATAAAAAAAAGTTA
*
7912193 TATATATTTTAGTAAATAAAAAAAAGTTA
1 TATATATTTTGGTAAATAAAAAAAAGTTA
*
7912222 TA-ACATTTTGGTAA
1 TATATATTTTGGTAA
7912236 TTTTTTTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 16 0.42
28 17 0.45
29 5 0.13
ACGTcount: A:0.50, C:0.01, G:0.09, T:0.40
Consensus pattern (29 bp):
TATATATTTTGGTAAATAAAAAAAAGTTA
Found at i:7915488 original size:16 final size:17
Alignment explanation
Indices: 7915469--7915507 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 17
7915459 TTATTATTTT
7915469 TAAAATTA-TAAAAATA
1 TAAAATTATTAAAAATA
*
7915485 TAAAATCATTAAAAATA
1 TAAAATTATTAAAAATA
7915502 -AAAATT
1 TAAAATT
7915508 CAAAATATAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (17 bp):
TAAAATTATTAAAAATA
Found at i:7916557 original size:15 final size:16
Alignment explanation
Indices: 7916525--7916566 Score: 50
Period size: 15 Copynumber: 2.6 Consensus size: 16
7916515 AAAAATTCAG
* *
7916525 TTTTCTTTGTGCTGTT
1 TTTTTTTTGTGCTATT
7916541 TTTTTTTTG-GCTATT
1 TTTTTTTTGTGCTATT
7916556 TTTTTTGTTGT
1 TTTTTT-TTGT
7916567 TCTTTCCCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.02, C:0.07, G:0.17, T:0.74
Consensus pattern (16 bp):
TTTTTTTTGTGCTATT
Found at i:7916781 original size:18 final size:19
Alignment explanation
Indices: 7916745--7916782 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
7916735 TTTTAAAAGA
7916745 AATTTTATATAAAAATAAT
1 AATTTTATATAAAAATAAT
7916764 AATTTTA-A-AAAAATTAAT
1 AATTTTATATAAAAA-TAAT
7916782 A
1 A
7916783 CGGGCTTGGC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.28
18 6 0.33
19 7 0.39
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AATTTTATATAAAAATAAT
Found at i:7923590 original size:17 final size:15
Alignment explanation
Indices: 7923568--7923610 Score: 61
Period size: 17 Copynumber: 2.8 Consensus size: 15
7923558 AAAAATGAAC
7923568 TTTTAAATATTTTTAGT
1 TTTTAAAT-TTTTTA-T
7923585 TTTTAAATTTTTTAT
1 TTTTAAATTTTTTAT
7923600 TTTT-AATTTTT
1 TTTTAAATTTTT
7923611 AAGAAGTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
14 7 0.27
15 5 0.19
16 6 0.23
17 8 0.31
ACGTcount: A:0.26, C:0.00, G:0.02, T:0.72
Consensus pattern (15 bp):
TTTTAAATTTTTTAT
Found at i:7930233 original size:41 final size:40
Alignment explanation
Indices: 7930187--7930322 Score: 152
Period size: 41 Copynumber: 3.3 Consensus size: 40
7930177 TAGCATATGT
* *
7930187 AGTGCCGGTGAATT-AATTCAGACTT-TAAGTCTAGCAGGCTA
1 AGTGCCGGTGAATTGAA-TCAG-GTTATAA-CCTAGCAGGCTA
*
7930228 AGTGCCGGTG-ATCTGAACCAGGTTATGAACCTAGCAGGCTA
1 AGTGCCGGTGAAT-TGAATCAGGTTAT-AACCTAGCAGGCTA
*
7930269 AGTGCCGGTGATTTGAATCAGGTTATAAACCTAGCAGGCTA
1 AGTGCCGGTGAATTGAATCAGGTTAT-AACCTAGCAGGCTA
*
7930310 CGTGCCGGTGAAT
1 AGTGCCGGTGAAT
7930323 ATGTTAAATT
Statistics
Matches: 82, Mismatches: 8, Indels: 10
0.82 0.08 0.10
Matches are distributed among these distances:
40 4 0.05
41 73 0.89
42 5 0.06
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGCCGGTGAATTGAATCAGGTTATAACCTAGCAGGCTA
Found at i:7936109 original size:24 final size:25
Alignment explanation
Indices: 7936057--7936117 Score: 106
Period size: 25 Copynumber: 2.5 Consensus size: 25
7936047 GCTAAAGCTT
*
7936057 TAGTTGCAATTTAAGAGGTATTTTA
1 TAGTTGCAATTCAAGAGGTATTTTA
7936082 TAGTTGCAATTCAAGAGGT-TTTTA
1 TAGTTGCAATTCAAGAGGTATTTTA
7936106 TAGTTGCAATTC
1 TAGTTGCAATTC
7936118 TGGTTTGAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
24 17 0.49
25 18 0.51
ACGTcount: A:0.30, C:0.08, G:0.20, T:0.43
Consensus pattern (25 bp):
TAGTTGCAATTCAAGAGGTATTTTA
Found at i:7936355 original size:22 final size:22
Alignment explanation
Indices: 7936325--7936366 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
7936315 ATGGCTTGCG
*
7936325 TTTGGATGTGTTCTTATTTAAA
1 TTTGAATGTGTTCTTATTTAAA
7936347 TTTGAATGTGTTCTTATTTA
1 TTTGAATGTGTTCTTATTTA
7936367 GTGCAGCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.21, C:0.05, G:0.17, T:0.57
Consensus pattern (22 bp):
TTTGAATGTGTTCTTATTTAAA
Found at i:7941319 original size:110 final size:110
Alignment explanation
Indices: 7941202--7941652 Score: 785
Period size: 110 Copynumber: 4.0 Consensus size: 110
7941192 TTATTAAGAA
7941202 TTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACA
1 TTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACA
7941267 GTATCATATATTATGATTTGAGTAAATTAATATAAGAACATTAAT
66 GTATCATATATTATGATTTGAGTAAATTAATATAAGAACATTAAT
7941312 TTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACA
1 TTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACA
*
7941377 GTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAGAAT
66 GTATCATATATTATGATTTGAGTAAATTAATATAAG------AA-CATT---AAT
7941432 TTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACA
1 TTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACA
7941497 GTATCATATATTATGATTTGAGTAAATTAATATAAGAACATTAAT
66 GTATCATATATTATGATTTGAGTAAATTAATATAAGAACATTAAT
7941542 TTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACA
1 TTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACA
* *
7941607 GTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAAT
66 GTATCATATATTATGATTTGAGTAAATTAATATAAGAACATTAAT
7941652 T
1 T
7941653 ATTAAGAATT
Statistics
Matches: 327, Mismatches: 4, Indels: 20
0.93 0.01 0.06
Matches are distributed among these distances:
110 213 0.65
113 3 0.01
114 2 0.01
116 2 0.01
117 3 0.01
120 104 0.32
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (110 bp):
TTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTTACA
GTATCATATATTATGATTTGAGTAAATTAATATAAGAACATTAAT
Found at i:7941439 original size:120 final size:120
Alignment explanation
Indices: 7941309--7942311 Score: 1828
Period size: 120 Copynumber: 8.4 Consensus size: 120
7941299 TAAGAACATT
* *
7941309 AATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
7941374 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
* *
7941429 AATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
* *
7941494 ACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAACATT-A--A-T---
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
*
7941542 --TTTT-TTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
7941604 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
*
7941659 AATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
7941724 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
7941779 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
*
7941844 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTCTTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
*
7941899 AATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
7941964 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
7942019 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
7942084 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
*
7942139 AATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
7942204 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
66 ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
7942259 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
1 AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
7942312 TAAATATGAT
Statistics
Matches: 861, Mismatches: 12, Indels: 20
0.96 0.01 0.02
Matches are distributed among these distances:
110 101 0.12
111 5 0.01
113 1 0.00
114 1 0.00
116 1 0.00
117 1 0.00
119 4 0.00
120 747 0.87
ACGTcount: A:0.44, C:0.03, G:0.05, T:0.48
Consensus pattern (120 bp):
AATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTTAATTTATATTTT
ACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTATTAAG
Found at i:7941808 original size:18 final size:17
Alignment explanation
Indices: 7941780--7941814 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7941770 ATTATTAAGA
*
7941780 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7941797 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7941815 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7941900 original size:240 final size:240
Alignment explanation
Indices: 7941110--7942311 Score: 2131
Period size: 240 Copynumber: 5.1 Consensus size: 240
7941100 TTTTCAAGTT
*
7941110 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
7941175 TAATATAAGAATATTAATTATTAAGAATTT-TTTAAATTATATAGTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
*
7941239 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
* *
7941304 ACATT-A--A-T-----TTTT-TTAAATTATATAGTTTAATTAAA
196 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
*
7941339 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
** *
7941404 TAATATAAGAATATTAATTATTAAGAATTTTTTTAAATTATATAGTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
*
7941469 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
* *
7941534 ACATT-A--A-T-----TTTT-TTAAATTATATAGTTTAATTAAA
196 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
7941569 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
7941634 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
7941699 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
7941764 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
196 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
7941809 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
7941874 TAATATAAGAATATTAATTCTTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
7941939 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
7942004 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
196 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
7942049 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
7942114 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
7942179 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
131 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
7942244 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
196 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
7942289 ATATATTTAATAATAATTATGTT
1 ATATATTTAATAATAATTATGTT
7942312 TAAATATGAT
Statistics
Matches: 953, Mismatches: 9, Indels: 11
0.98 0.01 0.01
Matches are distributed among these distances:
229 95 0.10
230 328 0.34
231 1 0.00
233 1 0.00
234 1 0.00
239 4 0.00
240 523 0.55
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.48
Consensus pattern (240 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAA
Found at i:7942048 original size:18 final size:17
Alignment explanation
Indices: 7942020--7942054 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7942010 ATTATTAAGA
*
7942020 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7942037 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7942055 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7942095 original size:360 final size:359
Alignment explanation
Indices: 7941110--7942311 Score: 2118
Period size: 360 Copynumber: 3.4 Consensus size: 359
7941100 TTTTCAAGTT
*
7941110 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
7941175 TAATATAAGAATATTAATTATTAAGAATTTTTTAAATTATATAGTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTATTAAATTATATAGTTTAATTAAAATATATTTAAT
*
7941240 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAA
* *
7941305 CATT-A--A-T-----TTTT-TTAAATTATATAGTTTAATTAAAATATATTTAATAATAATTATG
196 TATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG
*
7941360 TTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAATTAATATAAGAATATTAATTAT
261 TTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
* *
7941425 TAAGAATTTTTTTAAATTATATAGTTTAATTAAA
326 TAAGAATTTTATTAAATTATATATTTTAATTAAA
*
7941459 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTGAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
7941524 TAATATAAGAACATT-A--ATT-----TTT-TTAAATTATATAGTTTAATTAAAATATATTTAAT
66 TAATATAAGAATATTAATTATTAAGAATTTATTAAATTATATAGTTTAATTAAAATATATTTAAT
7941580 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAA
131 AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAA
*
7941645 TATTAATTATTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG
196 TATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG
7941710 TTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
261 TTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
7941775 TAAGAATTTTATTAAATTATATATTTTAATTAAA
326 TAAGAATTTTATTAAATTATATATTTTAATTAAA
7941809 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
* *
7941874 TAATATAAGAATATTAATTCTTAAGAATTTCATTAAATTATATATTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAATTT-ATTAAATTATATAGTTTAATTAAAATATATTTAA
7941939 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
130 TAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGA
7942004 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
195 ATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTAT
7942069 GTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTA
260 GTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTA
*
7942134 TTAAGAATTTCATTAAATTATATATTTTAATTAAA
325 TTAAGAATTTTATTAAATTATATATTTTAATTAAA
7942169 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
1 ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
*
7942234 TAATATAAGAATATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAA
66 TAATATAAGAATATTAATTATTAAGAA-TTTATTAAATTATATAGTTTAATTAAAATATATTTAA
7942299 TAATAATTATGTT
130 TAATAATTATGTT
7942312 TAAATATGAT
Statistics
Matches: 817, Mismatches: 15, Indels: 31
0.95 0.02 0.04
Matches are distributed among these distances:
340 101 0.12
341 4 0.00
343 1 0.00
344 1 0.00
346 3 0.00
348 1 0.00
349 82 0.10
350 217 0.27
351 1 0.00
353 2 0.00
358 3 0.00
360 398 0.49
361 3 0.00
ACGTcount: A:0.44, C:0.03, G:0.06, T:0.48
Consensus pattern (359 bp):
ATATATTTAATAATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAAT
TAATATAAGAATATTAATTATTAAGAATTTATTAAATTATATAGTTTAATTAAAATATATTTAAT
AATAATTATGTTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAA
TATTAATTATTAAGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATG
TTAATTTATATTTTACAGTATCATATATTATGATTTCAGTAAATTAATATAAGAATATTAATTAT
TAAGAATTTTATTAAATTATATATTTTAATTAAA
Found at i:7942288 original size:18 final size:17
Alignment explanation
Indices: 7942260--7942294 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7942250 ATTATTAAGA
*
7942260 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7942277 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7942295 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7942508 original size:44 final size:45
Alignment explanation
Indices: 7942459--7942549 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
7942449 ACCTCTATTC
* * *
7942459 CATTCAACCAAACACAAGATTA-CTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
***
7942503 CATTCAACCAAACAGTGGATTAGCTATTACACCTCTAATCCAATA
1 CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
7942548 CA
1 CA
7942550 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 19 0.47
45 21 0.52
ACGTcount: A:0.37, C:0.29, G:0.07, T:0.27
Consensus pattern (45 bp):
CATTCAACCAAACACAAGATTAGCTATTACACCTCTAATCCAATA
Found at i:7942551 original size:16 final size:16
Alignment explanation
Indices: 7942530--7942598 Score: 120
Period size: 16 Copynumber: 4.2 Consensus size: 16
7942520 GATTAGCTAT
7942530 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
7942546 TACACCTCTAATCCCAA
1 TACACCTCTAAT-CCAA
7942563 TACACCTCTAATCCAA
1 TACACCTCTAATCCAA
*
7942579 TACGCCTCTAATCCAA
1 TACACCTCTAATCCAA
7942595 TACA
1 TACA
7942599 GCGAACCAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
16 34 0.68
17 16 0.32
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (16 bp):
TACACCTCTAATCCAA
Found at i:7942572 original size:33 final size:32
Alignment explanation
Indices: 7942530--7942598 Score: 120
Period size: 33 Copynumber: 2.1 Consensus size: 32
7942520 GATTAGCTAT
7942530 TACACCTCTAATCCAATACACCTCTAATCCCAA
1 TACACCTCTAATCCAATACACCTCTAAT-CCAA
*
7942563 TACACCTCTAATCCAATACGCCTCTAATCCAA
1 TACACCTCTAATCCAATACACCTCTAATCCAA
7942595 TACA
1 TACA
7942599 GCGAACCAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
32 8 0.23
33 27 0.77
ACGTcount: A:0.36, C:0.38, G:0.01, T:0.25
Consensus pattern (32 bp):
TACACCTCTAATCCAATACACCTCTAATCCAA
Found at i:7942696 original size:9 final size:9
Alignment explanation
Indices: 7942684--7942734 Score: 52
Period size: 10 Copynumber: 5.7 Consensus size: 9
7942674 TTATTTTATT
7942684 AATTTAAAA
1 AATTTAAAA
7942693 AATTT--AA
1 AATTTAAAA
7942700 AATTTAAAA
1 AATTTAAAA
*
7942709 TGATTTAAAA
1 -AATTTAAAA
*
7942719 ATATATAAAA
1 A-ATTTAAAA
7942729 AATTTA
1 AATTTA
7942735 TTTTTTAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
7 7 0.21
9 11 0.32
10 16 0.47
ACGTcount: A:0.61, C:0.00, G:0.02, T:0.37
Consensus pattern (9 bp):
AATTTAAAA
Found at i:7943899 original size:63 final size:63
Alignment explanation
Indices: 7943824--7943946 Score: 167
Period size: 63 Copynumber: 2.0 Consensus size: 63
7943814 GAATGAGAAC
* * *
7943824 TAAATTAATAAATTTTATAAATATCGAGGGTTAAATTTATTAATTT-TTTTTTATAATTTAAAT
1 TAAAATAATAAATTTTATAAATATCAAGAGTTAAATTTATTAATTTCTTTTTTAT-ATTTAAAT
* * * *
7943887 TAAAATAATAAATTTTGTAAATATTAAGAGTTAAATTTGTTGATTTCTTTTTTATATTTA
1 TAAAATAATAAATTTTATAAATATCAAGAGTTAAATTTATTAATTTCTTTTTTATATTTA
7943947 GGATCATGTG
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
63 44 0.85
64 8 0.15
ACGTcount: A:0.40, C:0.02, G:0.07, T:0.51
Consensus pattern (63 bp):
TAAAATAATAAATTTTATAAATATCAAGAGTTAAATTTATTAATTTCTTTTTTATATTTAAAT
Found at i:7944268 original size:31 final size:29
Alignment explanation
Indices: 7944204--7944273 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 29
7944194 ACTCGTTCCT
*
7944204 ATTTTAGTCACCCATTTAGAAAAATTGTT
1 ATTTTAGTCACCCATTTAGAAAAATTGTA
* *
7944233 ATTTTAGTCACTTCCA-TTAGATAAGTTGTCA
1 ATTTTAGTCAC--CCATTTAGAAAAATTGT-A
7944264 ATTTTAGTCA
1 ATTTTAGTCA
7944274 ATCTACTGTT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 11 0.31
30 11 0.31
31 13 0.37
ACGTcount: A:0.31, C:0.14, G:0.11, T:0.43
Consensus pattern (29 bp):
ATTTTAGTCACCCATTTAGAAAAATTGTA
Found at i:7945842 original size:16 final size:16
Alignment explanation
Indices: 7945821--7945854 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
7945811 AATAAATTAC
7945821 TAAAAAT-TTATAAAAA
1 TAAAAATATT-TAAAAA
7945837 TAAAAATATTTAAAAA
1 TAAAAATATTTAAAAA
7945853 TA
1 TA
7945855 GAGAAAACTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 15 0.88
17 2 0.12
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
TAAAAATATTTAAAAA
Found at i:7947698 original size:75 final size:74
Alignment explanation
Indices: 7947584--7947850 Score: 297
Period size: 75 Copynumber: 3.6 Consensus size: 74
7947574 AAGTTTTTCA
** * * * * * *
7947584 CCCAGCGCTAGTTAGAT-AACTGACAATTATAATGATGTGCCCAACACTAGTCACATAAACTGAT
1 CCCAGCGCTAGTCGGATAAACCGACAAATATAATGGTGTGCCCTACACTAGTCAGATAAACTGAC
7947648 GAAAGTTATG
66 GAAAGTTA-G
* * * *
7947658 CCCAGTGCTAGTCGGATAAACCGACAAATATAATGGTGTGCCCTGCACTAGTTAGATAAATTGAC
1 CCCAGCGCTAGTCGGATAAACCGACAAATATAATGGTGTGCCCTACACTAGTCAGATAAACTGAC
7947723 GAAAGTT-G
66 GAAAGTTAG
* * *
7947731 CGCCAAGCGCTAGTCGAATAAACCGACAAATATAATGGTGTGCCCTACACTAGCCAGATAAACTA
1 C-CC-AGCGCTAGTCGGATAAACCGACAAATATAATGGTGTGCCCTACACTAGTCAGATAAACTG
7947796 ACG-AAGATTGAG
64 ACGAAAG-TT-AG
* * *
7947808 CCCAGCACTAGTCGGATAAACCGACAGATATAGAGGGTGTGCC
1 CCCAGCGCTAGTCGGATAAACCGACAAATATA-ATGGTGTGCC
7947851 TAGCACTGGT
Statistics
Matches: 163, Mismatches: 23, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
73 2 0.01
74 19 0.12
75 129 0.79
76 11 0.07
77 2 0.01
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.22
Consensus pattern (74 bp):
CCCAGCGCTAGTCGGATAAACCGACAAATATAATGGTGTGCCCTACACTAGTCAGATAAACTGAC
GAAAGTTAG
Found at i:7951458 original size:5 final size:5
Alignment explanation
Indices: 7951448--7951473 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
7951438 TGAGCATTCG
7951448 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
7951474 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:7952508 original size:9 final size:9
Alignment explanation
Indices: 7952494--7952530 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
7952484 TATAGTTTGA
7952494 TATTCGAAT
1 TATTCGAAT
7952503 TATTCGAAT
1 TATTCGAAT
*
7952512 TATTCGAGT
1 TATTCGAAT
7952521 TATTCGAAT
1 TATTCGAAT
7952530 T
1 T
7952531 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:7956022 original size:26 final size:26
Alignment explanation
Indices: 7956000--7956072 Score: 137
Period size: 26 Copynumber: 2.8 Consensus size: 26
7955990 ACTTATGTGC
7956000 GAGCCCTTGTGTGTAAGCCTATGCAT
1 GAGCCCTTGTGTGTAAGCCTATGCAT
7956026 GAGCCCTTGTGTGTAAGCCTATGCAT
1 GAGCCCTTGTGTGTAAGCCTATGCAT
*
7956052 GAGCCCTTGTGTGTAAACCTA
1 GAGCCCTTGTGTGTAAGCCTA
7956073 AGAGCAAGGC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.21, C:0.23, G:0.26, T:0.30
Consensus pattern (26 bp):
GAGCCCTTGTGTGTAAGCCTATGCAT
Found at i:7956498 original size:15 final size:13
Alignment explanation
Indices: 7956460--7956514 Score: 56
Period size: 13 Copynumber: 4.0 Consensus size: 13
7956450 GAACTTTGTA
*
7956460 TGTGCGAACCCCTA
1 TGTGCGAA-CCCTT
*
7956474 AGTGCGAACCCTACT
1 TGTGCGAACCCT--T
*
7956489 TGTGCAAACCCTT
1 TGTGCGAACCCTT
7956502 TGTGCGAACCCTT
1 TGTGCGAACCCTT
7956515 AGGTGCGAGC
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
13 17 0.50
14 7 0.21
15 10 0.29
ACGTcount: A:0.22, C:0.33, G:0.20, T:0.25
Consensus pattern (13 bp):
TGTGCGAACCCTT
Found at i:7956522 original size:14 final size:14
Alignment explanation
Indices: 7956458--7956527 Score: 63
Period size: 14 Copynumber: 5.0 Consensus size: 14
7956448 ACGAACTTTG
*
7956458 TATGTGCGAACCCC
1 TATGTGCGAACCCT
*
7956472 TAAGTGCGAACCC-
1 TATGTGCGAACCCT
*
7956485 TACTTGTGCAAACCCT
1 TA--TGTGCGAACCCT
7956501 T-TGTGCGAACCCT
1 TATGTGCGAACCCT
* *
7956514 TAGGTGCGAGCCCT
1 TATGTGCGAACCCT
7956528 ACCTATGTGA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
13 14 0.30
14 22 0.48
15 9 0.20
16 1 0.02
ACGTcount: A:0.21, C:0.31, G:0.23, T:0.24
Consensus pattern (14 bp):
TATGTGCGAACCCT
Found at i:7956541 original size:42 final size:41
Alignment explanation
Indices: 7956460--7956543 Score: 105
Period size: 42 Copynumber: 2.0 Consensus size: 41
7956450 GAACTTTGTA
7956460 TGTGCGAACCCCTAAGTGCGAACCCTACTTGTGCAAACCCTT
1 TGTGCGAACCCCTAAGTGCGAACCCTACTTGTG-AAACCCTT
* * * *
7956502 TGTGCGAACCCTTAGGTGCGAGCCCTACCTATGTGAACCCCT
1 TGTGCGAACCCCTAAGTGCGAACCCTA-CT-TGTGAAACCCT
7956544 GAGTGTGCGA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 24 0.67
43 8 0.22
44 4 0.11
ACGTcount: A:0.21, C:0.33, G:0.21, T:0.24
Consensus pattern (41 bp):
TGTGCGAACCCCTAAGTGCGAACCCTACTTGTGAAACCCTT
Found at i:7958043 original size:7 final size:7
Alignment explanation
Indices: 7958026--7958066 Score: 50
Period size: 6 Copynumber: 5.9 Consensus size: 7
7958016 ATTGAATCGG
7958026 ATTTCTTT
1 ATTT-TTT
7958034 ATTTTTT
1 ATTTTTT
7958041 A-TTTTT
1 ATTTTTT
7958047 A-TTTTT
1 ATTTTTT
7958053 ATTTTTTT
1 A-TTTTTT
7958061 ATTTTT
1 ATTTTT
7958067 ATAAATTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 5
0.86 0.00 0.14
Matches are distributed among these distances:
6 12 0.39
7 9 0.29
8 10 0.32
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (7 bp):
ATTTTTT
Found at i:7958060 original size:20 final size:19
Alignment explanation
Indices: 7958031--7958068 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
7958021 ATCGGATTTC
7958031 TTTATTTTTTATTTTTATT
1 TTTATTTTTTATTTTTATT
7958050 TTTATTTTTTTATTTTTAT
1 TTTA-TTTTTTATTTTTAT
7958069 AAATTTTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (19 bp):
TTTATTTTTTATTTTTATT
Found at i:7958575 original size:10 final size:10
Alignment explanation
Indices: 7958562--7958613 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 10
7958552 ATAAAATTTT
7958562 AATAAATAAA
1 AATAAATAAA
7958572 AATAAATAAA
1 AATAAATAAA
*
7958582 AAT-ATTAAA
1 AATAAATAAA
*
7958591 TAGTAAATTAAA
1 -AATAAA-TAAA
7958603 AATAATATAAA
1 AATAA-ATAAA
7958614 TATATATTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
9 5 0.15
10 15 0.44
11 9 0.26
12 5 0.15
ACGTcount: A:0.71, C:0.00, G:0.02, T:0.27
Consensus pattern (10 bp):
AATAAATAAA
Found at i:7958604 original size:21 final size:22
Alignment explanation
Indices: 7958562--7958615 Score: 62
Period size: 20 Copynumber: 2.6 Consensus size: 22
7958552 ATAAAATTTT
*
7958562 AATAA-ATAAA-AATAAATAAA
1 AATAATATAAATAGTAAATAAA
7958582 AAT-AT-TAAATAGTAAATTAAA
1 AATAATATAAATAGTAAA-TAAA
7958603 AATAATATAAATA
1 AATAATATAAATA
7958616 TATATTTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 5 0.18
20 8 0.29
21 7 0.25
22 2 0.07
23 6 0.21
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (22 bp):
AATAATATAAATAGTAAATAAA
Found at i:7966080 original size:5 final size:5
Alignment explanation
Indices: 7966070--7966102 Score: 57
Period size: 5 Copynumber: 6.4 Consensus size: 5
7966060 AAACTTTTAA
7966070 TTATT TTATT TTATT TTATTT TTATT TTATT TT
1 TTATT TTATT TTATT TTA-TT TTATT TTATT TT
7966103 GTTTCTTTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 22 0.81
6 5 0.19
ACGTcount: A:0.18, C:0.00, G:0.00, T:0.82
Consensus pattern (5 bp):
TTATT
Found at i:7972826 original size:125 final size:131
Alignment explanation
Indices: 7972609--7972874 Score: 400
Period size: 131 Copynumber: 2.1 Consensus size: 131
7972599 ATTTATGACT
* * *
7972609 AATTTGAGTAACACATCAACATCGTGACGTAAAAAAACTAATATATATATATATATATATATTAT
1 AATTTGAGTAACACATCAACATCGTCACCTAAAAAAACTAATATATATATATATATATATATGAT
7972674 AAGCTATACTACTAAGCAAAGAAACATTCCAACATGACATCC-TATATTTATGACAAATAGACAT
66 AA-CTATACTACTAAGCAAAGAAACATTCCAACATGACATCCTTATATTTATGACAAATAGACAT
7972738 CC
130 CC
* * *
7972740 AATTTGAGTAACACATCAACATCGTCACCTAAGAAAATTAATATATATATATAT-TATA-A-GCT
1 AATTTGAGTAACACATCAACATCGTCACCTAAAAAAACTAATATATATATATATATATATATGAT
** *
7972802 -A-TATACTACTAATTAAAGAAACATTCCAACATGACATCCTTATATTTATGGCAAATAGACATC
66 AACTATACTACTAAGCAAAGAAACATTCCAACATGACATCCTTATATTTATGACAAATAGACATC
7972865 C
131 C
7972866 AATTTGAGT
1 AATTTGAGT
7972875 GACGTAAGAA
Statistics
Matches: 125, Mismatches: 9, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
125 36 0.29
126 32 0.26
127 1 0.01
128 1 0.01
129 1 0.01
130 4 0.03
131 50 0.40
ACGTcount: A:0.44, C:0.17, G:0.09, T:0.30
Consensus pattern (131 bp):
AATTTGAGTAACACATCAACATCGTCACCTAAAAAAACTAATATATATATATATATATATATGAT
AACTATACTACTAAGCAAAGAAACATTCCAACATGACATCCTTATATTTATGACAAATAGACATC
C
Found at i:7977841 original size:27 final size:27
Alignment explanation
Indices: 7977802--7977856 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
7977792 ATTACCATTC
*
7977802 ATAATAACCGAGTATGAAATCGAACTA
1 ATAATAACCGAGTACGAAATCGAACTA
** *
7977829 ATAATAATTGAGTACGAAATCGAGCTA
1 ATAATAACCGAGTACGAAATCGAACTA
7977856 A
1 A
7977857 CACAATGTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.47, C:0.13, G:0.16, T:0.24
Consensus pattern (27 bp):
ATAATAACCGAGTACGAAATCGAACTA
Found at i:7981098 original size:30 final size:31
Alignment explanation
Indices: 7981059--7981123 Score: 87
Period size: 31 Copynumber: 2.1 Consensus size: 31
7981049 ATTCCTTTAA
*
7981059 ATGTGTACATTT-AAATCAAACTAAAGTTTC
1 ATGTATACATTTAAAATCAAACTAAAGTTTC
* * *
7981089 ATGTATACATTTAAAATGAAATTAAAGTTTT
1 ATGTATACATTTAAAATCAAACTAAAGTTTC
7981120 ATGT
1 ATGT
7981124 GTATAACTAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 11 0.37
31 19 0.63
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.40
Consensus pattern (31 bp):
ATGTATACATTTAAAATCAAACTAAAGTTTC
Found at i:7982528 original size:25 final size:25
Alignment explanation
Indices: 7982499--7982578 Score: 101
Period size: 25 Copynumber: 3.2 Consensus size: 25
7982489 TGAACCATAA
7982499 CTCGTGAGAGCATACCGATTTACAG
1 CTCGTGAGAGCATACCGATTTACAG
* *
7982524 CTCGTGAGAGCATACCGATCTATAG
1 CTCGTGAGAGCATACCGATTTACAG
*
7982549 CT--TGAGTAAGCATACCGATTCACAG
1 CTCGTGAG--AGCATACCGATTTACAG
7982574 CTCGT
1 CTCGT
7982579 ATAACCATAC
Statistics
Matches: 46, Mismatches: 5, Indels: 6
0.81 0.09 0.11
Matches are distributed among these distances:
23 4 0.09
25 41 0.89
27 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (25 bp):
CTCGTGAGAGCATACCGATTTACAG
Found at i:7993410 original size:14 final size:14
Alignment explanation
Indices: 7993376--7993411 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
7993366 TATTTAGTAA
*
7993376 TATTATAAATCTAT
1 TATTATTAATCTAT
*
7993390 TATTATTAATTTAT
1 TATTATTAATCTAT
7993404 TATTATTA
1 TATTATTA
7993412 TCACCGCTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (14 bp):
TATTATTAATCTAT
Found at i:8004796 original size:43 final size:43
Alignment explanation
Indices: 8004724--8004846 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 43
8004714 TCGTCGCTAA
* ** * * * *
8004724 CTTTAACGGCGCTTCCAGTAAAAATGCCGCTAAAGGCCGAGAC
1 CTTTAGCGGCGCTTCCAACACAAACGCCGCTAAAGACCAAGAC
* *
8004767 CTTTAGCGGCGCTTCCAACACAAACGCCGCCAAAGACCAAGAT
1 CTTTAGCGGCGCTTCCAACACAAACGCCGCTAAAGACCAAGAC
* *
8004810 CTTTAGCGGCGCTTTCGACACAAACGCCGCTAAAGAC
1 CTTTAGCGGCGCTTCCAACACAAACGCCGCTAAAGAC
8004847 GGCGCTTTTC
Statistics
Matches: 68, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 68 1.00
ACGTcount: A:0.30, C:0.32, G:0.21, T:0.17
Consensus pattern (43 bp):
CTTTAGCGGCGCTTCCAACACAAACGCCGCTAAAGACCAAGAC
Found at i:8004852 original size:30 final size:30
Alignment explanation
Indices: 8004816--8004876 Score: 106
Period size: 30 Copynumber: 2.0 Consensus size: 30
8004806 AGATCTTTAG
8004816 CGGCGC-TTTCGACACAAACGCCGCTAAAGA
1 CGGCGCTTTTC-ACACAAACGCCGCTAAAGA
8004846 CGGCGCTTTTCACACAAACGCCGCTAAAGA
1 CGGCGCTTTTCACACAAACGCCGCTAAAGA
8004876 C
1 C
8004877 CAAGACCTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 26 0.87
31 4 0.13
ACGTcount: A:0.30, C:0.34, G:0.21, T:0.15
Consensus pattern (30 bp):
CGGCGCTTTTCACACAAACGCCGCTAAAGA
Found at i:8004907 original size:43 final size:44
Alignment explanation
Indices: 8004846--8005068 Score: 263
Period size: 44 Copynumber: 5.1 Consensus size: 44
8004836 CCGCTAAAGA
**
8004846 CGGCGCTTTTCACACAAACGCCGCTAAAGACCAAGACC-TTTAG
1 CGGCGCTTCCCACACAAACGCCGCTAAAGACCAAGACCATTTAG
* *
8004889 CGGCGCAT-CCAGCACAAACGCCGCTAAAGAGCAAGACC-TTTAG
1 CGGCGCTTCCCA-CACAAACGCCGCTAAAGACCAAGACCATTTAG
* *
8004932 CGGCGCTTCCCACACAAACGCCGCTAAAGACGACGACCATTTAG
1 CGGCGCTTCCCACACAAACGCCGCTAAAGACCAAGACCATTTAG
* *
8004976 CGGCGCTTCCCACACAAACGCCGCTAAAGACGACGACCATTTAG
1 CGGCGCTTCCCACACAAACGCCGCTAAAGACCAAGACCATTTAG
* ** * * * * * *
8005020 CGGCACTTTTCTCACAAATGCCGCAAAAGACTAAGGCCTTTTAG
1 CGGCGCTTCCCACACAAACGCCGCTAAAGACCAAGACCATTTAG
8005064 CGGCG
1 CGGCG
8005069 TTTTTGGGAA
Statistics
Matches: 159, Mismatches: 18, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
42 2 0.01
43 67 0.42
44 90 0.57
ACGTcount: A:0.30, C:0.33, G:0.21, T:0.16
Consensus pattern (44 bp):
CGGCGCTTCCCACACAAACGCCGCTAAAGACCAAGACCATTTAG
Found at i:8004933 original size:116 final size:116
Alignment explanation
Indices: 8004749--8004963 Score: 349
Period size: 116 Copynumber: 1.9 Consensus size: 116
8004739 CAGTAAAAAT
* * * *
8004749 GCCGCTAAAGGCCGAGACCTTTAGCGGCGCTTCCAACACAAACGCCGCCAAAGACCAAGATCTTT
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCATCCAACACAAACGCCGCCAAAGACCAAGACCTTT
* *
8004814 AGCGGCGCTTTCGACACAAACGCCGCTAAAGACGGCGCTTTTCACACAAAC
66 AGCGGCGCTTCCCACACAAACGCCGCTAAAGACGGCGCTTTTCACACAAAC
* * *
8004865 GCCGCTAAAGACCAAGACCTTTAGCGGCGCATCCAGCACAAACGCCGCTAAAGAGCAAGACCTTT
1 GCCGCTAAAGACCAAGACCTTTAGCGGCGCATCCAACACAAACGCCGCCAAAGACCAAGACCTTT
8004930 AGCGGCGCTTCCCACACAAACGCCGCTAAAGACG
66 AGCGGCGCTTCCCACACAAACGCCGCTAAAGACG
8004964 ACGACCATTT
Statistics
Matches: 90, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
116 90 1.00
ACGTcount: A:0.30, C:0.34, G:0.22, T:0.14
Consensus pattern (116 bp):
GCCGCTAAAGACCAAGACCTTTAGCGGCGCATCCAACACAAACGCCGCCAAAGACCAAGACCTTT
AGCGGCGCTTCCCACACAAACGCCGCTAAAGACGGCGCTTTTCACACAAAC
Found at i:8005352 original size:9 final size:9
Alignment explanation
Indices: 8005338--8005379 Score: 57
Period size: 9 Copynumber: 4.7 Consensus size: 9
8005328 AAGACGGCGA
8005338 CTGTTGCGG
1 CTGTTGCGG
8005347 CTGTTGCGG
1 CTGTTGCGG
*
8005356 CTGCTGCGG
1 CTGTTGCGG
* *
8005365 CTGCTGCGA
1 CTGTTGCGG
8005374 CTGTTG
1 CTGTTG
8005380 AAACATATTC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 30 1.00
ACGTcount: A:0.02, C:0.26, G:0.40, T:0.31
Consensus pattern (9 bp):
CTGTTGCGG
Found at i:8005365 original size:18 final size:18
Alignment explanation
Indices: 8005334--8005379 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 18
8005324 GTCTAAGACG
*
8005334 GCGACTGTTGCGGCTGTT
1 GCGACTGTTGCGGCTGCT
* *
8005352 GCGGCTGCTGCGGCTGCT
1 GCGACTGTTGCGGCTGCT
8005370 GCGACTGTTG
1 GCGACTGTTG
8005380 AAACATATTC
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.04, C:0.26, G:0.41, T:0.28
Consensus pattern (18 bp):
GCGACTGTTGCGGCTGCT
Found at i:8011004 original size:16 final size:16
Alignment explanation
Indices: 8010993--8011032 Score: 71
Period size: 16 Copynumber: 2.5 Consensus size: 16
8010983 AGTTATGAAG
8010993 GTTATGTATTATGTAA
1 GTTATGTATTATGTAA
*
8011009 GTTGTGTATTATGTAA
1 GTTATGTATTATGTAA
8011025 GTTATGTA
1 GTTATGTA
8011033 AGTTAAATAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.28, C:0.00, G:0.23, T:0.50
Consensus pattern (16 bp):
GTTATGTATTATGTAA
Found at i:8011016 original size:9 final size:9
Alignment explanation
Indices: 8010983--8011037 Score: 57
Period size: 9 Copynumber: 6.6 Consensus size: 9
8010973 AGTATATATG
8010983 AGTTATG-A
1 AGTTATGTA
8010991 AGGTTATGT-
1 A-GTTATGTA
8011000 A-TTATGTA
1 AGTTATGTA
*
8011008 AGTTGTGT-
1 AGTTATGTA
8011016 A-TTATGTA
1 AGTTATGTA
8011024 AGTTATGTA
1 AGTTATGTA
8011033 AGTTA
1 AGTTA
8011038 AATATTTATG
Statistics
Matches: 39, Mismatches: 2, Indels: 11
0.75 0.04 0.21
Matches are distributed among these distances:
7 11 0.28
8 4 0.10
9 24 0.62
ACGTcount: A:0.31, C:0.00, G:0.24, T:0.45
Consensus pattern (9 bp):
AGTTATGTA
Found at i:8011120 original size:22 final size:22
Alignment explanation
Indices: 8011089--8011130 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
8011079 TAATTTAGTT
*
8011089 ATGTACGTTACGTATCATATTA
1 ATGTAAGTTACGTATCATATTA
* *
8011111 ATGTAAGTTATGTATTATAT
1 ATGTAAGTTACGTATCATAT
8011131 AAGTTATTTA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.33, C:0.07, G:0.14, T:0.45
Consensus pattern (22 bp):
ATGTAAGTTACGTATCATATTA
Found at i:8011197 original size:38 final size:40
Alignment explanation
Indices: 8011106--8011235 Score: 133
Period size: 38 Copynumber: 3.2 Consensus size: 40
8011096 TTACGTATCA
* *
8011106 TATTAATGTAAGTTATGTATTATA-TAA-GTTATTTAAGTTATG
1 TATT-ATGTAAGTTATGTATAATATTAACGTGA--TAA-TTATG
*
8011148 TAAGTTGTGTAAGTTATGTATAATATTAACGT-A-AATTATG
1 T-A-TTATGTAAGTTATGTATAATATTAACGTGATAATTATG
* *
8011188 TATTATGTAAGTTATGTATAATATTAATGTGATAGTTATG
1 TATTATGTAAGTTATGTATAATATTAACGTGATAATTATG
8011228 TATTATGT
1 TATTATGT
8011236 TAATATTTAG
Statistics
Matches: 77, Mismatches: 5, Indels: 14
0.80 0.05 0.15
Matches are distributed among these distances:
38 26 0.34
39 2 0.03
40 20 0.26
41 2 0.03
42 1 0.01
43 18 0.23
44 6 0.08
45 2 0.03
ACGTcount: A:0.35, C:0.01, G:0.16, T:0.48
Consensus pattern (40 bp):
TATTATGTAAGTTATGTATAATATTAACGTGATAATTATG
Found at i:8011205 original size:9 final size:9
Alignment explanation
Indices: 8011111--8011167 Score: 73
Period size: 9 Copynumber: 6.6 Consensus size: 9
8011101 TATCATATTA
8011111 ATGTAAGTT
1 ATGTAAGTT
8011120 ATGT-A-TT
1 ATGTAAGTT
*
8011127 ATATAAGTT
1 ATGTAAGTT
*
8011136 ATTTAAGTT
1 ATGTAAGTT
8011145 ATGTAAGTT
1 ATGTAAGTT
*
8011154 GTGTAAGTT
1 ATGTAAGTT
8011163 ATGTA
1 ATGTA
8011168 TAATATTAAC
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
7 5 0.12
8 2 0.05
9 34 0.83
ACGTcount: A:0.33, C:0.00, G:0.19, T:0.47
Consensus pattern (9 bp):
ATGTAAGTT
Found at i:8011307 original size:69 final size:69
Alignment explanation
Indices: 8011232--8011425 Score: 286
Period size: 69 Copynumber: 2.8 Consensus size: 69
8011222 GTTATGTATT
*
8011232 ATGTTAATATTTAGAAAATAGCATTTACAATTATTTCTAAAATTATAAAATTTATTATTGAAAAT
1 ATGTTAATATTTAGAAAATAACATTTACAATTATTTCTAAAATTATAAAATTTATTATTGAAAAT
8011297 ATAG
66 ATAG
* *
8011301 ATGTTAATATTTAGAAAATAACATTTACAATTATTTCTAAAATTATAAAAATTAATT-TTGAGAA
1 ATGTTAATATTTAGAAAATAACATTTACAATTATTTCTAAAATTAT-AAAATTTATTATTGAAAA
8011365 TATAG
65 TATAG
* * * * *
8011370 GTTTTATTATTTA-AAAATAACATTTACAATTATTTTTAAAATTA-AAAGTTTATTAT
1 ATGTTAATATTTAGAAAATAACATTTACAATTATTTCTAAAATTATAAAATTTATTAT
8011426 CAATAAAATT
Statistics
Matches: 114, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
66 8 0.07
67 1 0.01
68 30 0.26
69 66 0.58
70 9 0.08
ACGTcount: A:0.46, C:0.04, G:0.06, T:0.44
Consensus pattern (69 bp):
ATGTTAATATTTAGAAAATAACATTTACAATTATTTCTAAAATTATAAAATTTATTATTGAAAAT
ATAG
Found at i:8011647 original size:27 final size:26
Alignment explanation
Indices: 8011600--8011651 Score: 61
Period size: 27 Copynumber: 2.0 Consensus size: 26
8011590 ATATGTTTAA
* *
8011600 AAATAACATATAATTATAATACATAAT
1 AAATAAAAAATAATTATAATA-ATAAT
8011627 AAATAAAAAATAATT-TGAATAATAA
1 AAATAAAAAATAATTAT-AATAATAA
8011652 CTCTCATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 5 0.23
27 17 0.77
ACGTcount: A:0.63, C:0.04, G:0.02, T:0.31
Consensus pattern (26 bp):
AAATAAAAAATAATTATAATAATAAT
Found at i:8012721 original size:12 final size:12
Alignment explanation
Indices: 8012704--8012746 Score: 52
Period size: 11 Copynumber: 3.6 Consensus size: 12
8012694 GGATTCTAGA
8012704 TTTGGGGGGATT
1 TTTGGGGGGATT
* *
8012716 TTT-GGGGAAAT
1 TTTGGGGGGATT
8012727 TTTGGGGGGAATT
1 TTTGGGGGG-ATT
8012740 TTTGGGG
1 TTTGGGG
8012747 AGAAAAGTGA
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
11 9 0.36
12 7 0.28
13 9 0.36
ACGTcount: A:0.14, C:0.00, G:0.47, T:0.40
Consensus pattern (12 bp):
TTTGGGGGGATT
Found at i:8013525 original size:19 final size:20
Alignment explanation
Indices: 8013498--8013538 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
8013488 AAAATTTTAA
8013498 TTAAATAAT-TATTAAAA-TT
1 TTAAATAATAT-TTAAAAGTT
*
8013517 TTAAGTAATATTTAAAAGTT
1 TTAAATAATATTTAAAAGTT
8013537 TT
1 TT
8013539 TGATAAAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 14 0.74
20 5 0.26
ACGTcount: A:0.46, C:0.00, G:0.05, T:0.49
Consensus pattern (20 bp):
TTAAATAATATTTAAAAGTT
Found at i:8014280 original size:15 final size:15
Alignment explanation
Indices: 8014262--8014351 Score: 69
Period size: 15 Copynumber: 5.9 Consensus size: 15
8014252 ACCCTTGACA
8014262 CCCTAACCCCTAAAT
1 CCCTAACCCCTAAAT
*
8014277 CCCTAACCCCT-AAC
1 CCCTAACCCCTAAAT
*
8014291 CCCTAAATCCCCCTAACT
1 CCCT-AA--CCCCTAAAT
* * *
8014309 -CCTAAATCACT-AAC
1 CCCT-AACCCCTAAAT
8014323 CCCTAACCCCTAAAT
1 CCCTAACCCCTAAAT
*
8014338 TCCTAACCCCTAAA
1 CCCTAACCCCTAAA
8014352 CCTTAATCTC
Statistics
Matches: 58, Mismatches: 11, Indels: 12
0.72 0.14 0.15
Matches are distributed among these distances:
14 12 0.21
15 34 0.59
17 11 0.19
18 1 0.02
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (15 bp):
CCCTAACCCCTAAAT
Found at i:8014282 original size:8 final size:7
Alignment explanation
Indices: 8014262--8014350 Score: 70
Period size: 7 Copynumber: 11.9 Consensus size: 7
8014252 ACCCTTGACA
8014262 CCCTAAC
1 CCCTAAC
*
8014269 CCCTAAAT
1 CCCT-AAC
8014277 CCCTAAC
1 CCCTAAC
8014284 CCCTAAC
1 CCCTAAC
8014291 CCCTAAATCC
1 CCCT-AA--C
8014301 CCCTAAC
1 CCCTAAC
* *
8014308 TCCTAAAT
1 CCCT-AAC
*
8014316 CACTAAC
1 CCCTAAC
8014323 CCCTAAC
1 CCCTAAC
*
8014330 CCCTAAAT
1 CCCT-AAC
*
8014338 TCCTAAC
1 CCCTAAC
8014345 CCCTAA
1 CCCTAA
8014351 ACCTTAATCT
Statistics
Matches: 64, Mismatches: 12, Indels: 12
0.73 0.14 0.14
Matches are distributed among these distances:
7 40 0.62
8 17 0.27
9 2 0.03
10 5 0.08
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (7 bp):
CCCTAAC
Found at i:8014290 original size:22 final size:22
Alignment explanation
Indices: 8014262--8014350 Score: 116
Period size: 22 Copynumber: 4.3 Consensus size: 22
8014252 ACCCTTGACA
8014262 CCCTAACCCCTAAATCCCTAAC
1 CCCTAACCCCTAAATCCCTAAC
8014284 CCCTAACCCCTAAAT--C---C
1 CCCTAACCCCTAAATCCCTAAC
* *
8014301 CCCTAACTCCTAAATCACTAAC
1 CCCTAACCCCTAAATCCCTAAC
*
8014323 CCCTAACCCCTAAATTCCTAAC
1 CCCTAACCCCTAAATCCCTAAC
8014345 CCCTAA
1 CCCTAA
8014351 ACCTTAATCT
Statistics
Matches: 58, Mismatches: 4, Indels: 10
0.81 0.06 0.14
Matches are distributed among these distances:
17 15 0.26
19 1 0.02
20 1 0.02
22 41 0.71
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (22 bp):
CCCTAACCCCTAAATCCCTAAC
Found at i:8015016 original size:41 final size:41
Alignment explanation
Indices: 8014970--8015124 Score: 126
Period size: 41 Copynumber: 3.8 Consensus size: 41
8014960 GTTTCCATCA
*
8014970 AAACGCCGCT-AAAACTC-CAACATTAGCGGCGCTTTACAAAC
1 AAACGCCACTAAAAAC-CACAACATTAGCGGCGC-TTACAAAC
**
8015011 AAACGCCACTAAAAACCTTAAC-TATAGCGGCGCATTATC-AA-
1 AAACGCCACTAAAAACCACAACAT-TAGCGGCGC-TTA-CAAAC
* * * *
8015052 AAACGCCGCTAAAAGCC-CTAA-AGTTAGCGGCGCTCAGAAAC
1 AAACGCCACTAAAAACCAC-AACA-TTAGCGGCGCTTACAAAC
*
8015093 AAACGCCACTAAAAACCATAACATTAGCGGCG
1 AAACGCCACTAAAAACCACAACATTAGCGGCG
8015125 TTTGTTTAAA
Statistics
Matches: 92, Mismatches: 11, Indels: 22
0.74 0.09 0.18
Matches are distributed among these distances:
40 4 0.04
41 63 0.68
42 24 0.26
43 1 0.01
ACGTcount: A:0.39, C:0.29, G:0.16, T:0.15
Consensus pattern (41 bp):
AAACGCCACTAAAAACCACAACATTAGCGGCGCTTACAAAC
Found at i:8015040 original size:42 final size:41
Alignment explanation
Indices: 8014993--8015124 Score: 128
Period size: 41 Copynumber: 3.2 Consensus size: 41
8014983 ACTCCAACAT
8014993 TAGCGGCGCTTTACAAACAAACGCCACTAAAAACCTTAACTA
1 TAGCGGCGC-TTACAAACAAACGCCACTAAAAACCTTAACTA
* * * *
8015035 TAGCGGCGCATTATC-AA-AAACGCCGCTAAAAGCCCTAAAGT-
1 TAGCGGCGC-TTA-CAAACAAACGCCACTAAAA-ACCTTAACTA
* * *
8015076 TAGCGGCGCTCAGAAACAAACGCCACTAAAAACCATAAC-A
1 TAGCGGCGCTTACAAACAAACGCCACTAAAAACCTTAACTA
8015116 TTAGCGGCG
1 -TAGCGGCG
8015125 TTTGTTTAAA
Statistics
Matches: 72, Mismatches: 12, Indels: 13
0.74 0.12 0.13
Matches are distributed among these distances:
40 8 0.11
41 43 0.60
42 20 0.28
43 1 0.01
ACGTcount: A:0.39, C:0.28, G:0.17, T:0.16
Consensus pattern (41 bp):
TAGCGGCGCTTACAAACAAACGCCACTAAAAACCTTAACTA
Found at i:8015140 original size:82 final size:82
Alignment explanation
Indices: 8014969--8015124 Score: 221
Period size: 82 Copynumber: 1.9 Consensus size: 82
8014959 CGTTTCCATC
* *
8014969 AAAACGCCGCTAAAACTCCAACATTAGCGGCGCTTTACAAACAAACGCCACTAAAAACCTTAACT
1 AAAACGCCGCTAAAACTCCAACATTAGCGGCGCTTCACAAACAAACGCCACTAAAAACCATAACT
8015034 ATAGCGGCGCATTATCA
66 ATAGCGGCGCATTATCA
*
8015051 AAAACGCCGCTAAAAGC-CCTAA-AGTTAGCGGCGC-TCAGAAACAAACGCCACTAAAAACCATA
1 AAAACGCCGCTAAAA-CTCC-AACA-TTAGCGGCGCTTCACAAACAAACGCCACTAAAAACCATA
8015113 AC-ATTAGCGGCG
63 ACTA-TAGCGGCG
8015125 TTTGTTTAAA
Statistics
Matches: 67, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
81 1 0.01
82 53 0.79
83 13 0.19
ACGTcount: A:0.40, C:0.29, G:0.16, T:0.15
Consensus pattern (82 bp):
AAAACGCCGCTAAAACTCCAACATTAGCGGCGCTTCACAAACAAACGCCACTAAAAACCATAACT
ATAGCGGCGCATTATCA
Found at i:8017407 original size:36 final size:38
Alignment explanation
Indices: 8017365--8017443 Score: 135
Period size: 38 Copynumber: 2.1 Consensus size: 38
8017355 GAGGATTAAA
8017365 ATTCTGCAACAGTCA-A-GATTTTCCTCAACCAAAAAT
1 ATTCTGCAACAGTCAGAGGATTTTCCTCAACCAAAAAT
*
8017401 ATTCTGCAACAGTCAGAGGATTTTCCTCAACCGAAAAT
1 ATTCTGCAACAGTCAGAGGATTTTCCTCAACCAAAAAT
8017439 ATTCT
1 ATTCT
8017444 AGAAAACAAA
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
36 15 0.38
37 1 0.03
38 24 0.60
ACGTcount: A:0.35, C:0.24, G:0.11, T:0.29
Consensus pattern (38 bp):
ATTCTGCAACAGTCAGAGGATTTTCCTCAACCAAAAAT
Found at i:8019522 original size:22 final size:22
Alignment explanation
Indices: 8019491--8019539 Score: 80
Period size: 22 Copynumber: 2.2 Consensus size: 22
8019481 CCGCAAAATC
* *
8019491 TCATATTACCTTTAAAGGGCTT
1 TCATACTACCTGTAAAGGGCTT
8019513 TCATACTACCTGTAAAGGGCTT
1 TCATACTACCTGTAAAGGGCTT
8019535 TCATA
1 TCATA
8019540 TCCATAAGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (22 bp):
TCATACTACCTGTAAAGGGCTT
Found at i:8022378 original size:19 final size:20
Alignment explanation
Indices: 8022362--8022402 Score: 59
Period size: 18 Copynumber: 2.1 Consensus size: 20
8022352 AAAAAATTTC
*
8022362 AAAATAATTTTAAAATTTTA
1 AAAATAATATTAAAATTTTA
8022382 AAAATAATATT--AATTTTA
1 AAAATAATATTAAAATTTTA
8022400 AAA
1 AAA
8022403 CTCAATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 10 0.50
20 10 0.50
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
AAAATAATATTAAAATTTTA
Found at i:8022933 original size:16 final size:15
Alignment explanation
Indices: 8022902--8022932 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8022892 TAAAGACAAG
8022902 ATTATTTTATTTAAA
1 ATTATTTTATTTAAA
*
8022917 ATTATTTTTTTTAAA
1 ATTATTTTATTTAAA
8022932 A
1 A
8022933 ACAGCTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
ATTATTTTATTTAAA
Found at i:8023624 original size:115 final size:116
Alignment explanation
Indices: 8023449--8023800 Score: 566
Period size: 115 Copynumber: 3.1 Consensus size: 116
8023439 CACATTCAGA
* * * *
8023449 AAACTTCAAATAAAAAAATATGATAATCTAAACCAGAACCAATCTGGATATGAAAAAATTAAATC
1 AAACTTCAAATAAAAAATTATGATAATCTAAACCAGACCCAGTCCGGATATGAAAAAATTAAATC
* *
8023514 CCAAAAATTCTAAATACGGAAGCGCCTAAGCTTAACAAATCCAAATCCAAG
66 CCAAAAATTCTAAACACGAAAGCGCCTAAGCTTAACAAATCCAAATCCAAG
* *
8023565 AAACTTCAAAT-AAATATTATGATAACCTAAACCAGACCCAGTCCGGATATGAAAAAATTAAATC
1 AAACTTCAAATAAAAAATTATGATAATCTAAACCAGACCCAGTCCGGATATGAAAAAATTAAATC
*
8023629 CCAAAAATTCTAAACACGAAAGCGCCTAAACTTAACAAATCCAAATCCAAG
66 CCAAAAATTCTAAACACGAAAGCGCCTAAGCTTAACAAATCCAAATCCAAG
*
8023680 AAACTTCAAATAAAAAATT-TGATAATCTAAACCAGACCCAGT-CTGATATGAAAAAATTAAATC
1 AAACTTCAAATAAAAAATTATGATAATCTAAACCAGACCCAGTCCGGATATGAAAAAATTAAATC
* * *
8023743 CCAAAAATTCTAAACACAAAAGCACCTAAGCTTAACAAATCCAAATCCAAT
66 CCAAAAATTCTAAACACGAAAGCGCCTAAGCTTAACAAATCCAAATCCAAG
8023794 AAACTTC
1 AAACTTC
8023801 CAGAATGAAT
Statistics
Matches: 219, Mismatches: 16, Indels: 4
0.92 0.07 0.02
Matches are distributed among these distances:
114 74 0.34
115 128 0.58
116 17 0.08
ACGTcount: A:0.50, C:0.21, G:0.08, T:0.21
Consensus pattern (116 bp):
AAACTTCAAATAAAAAATTATGATAATCTAAACCAGACCCAGTCCGGATATGAAAAAATTAAATC
CCAAAAATTCTAAACACGAAAGCGCCTAAGCTTAACAAATCCAAATCCAAG
Found at i:8026399 original size:21 final size:22
Alignment explanation
Indices: 8026369--8026410 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
8026359 CAAAGAAAAT
8026369 TTTTTCCCTATAA-ATACTCAAG
1 TTTTTCCCTATAAGA-ACTCAAG
8026391 TTTTT-CCTATAAGAACTCAA
1 TTTTTCCCTATAAGAACTCAA
8026411 TTAATTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.33, C:0.21, G:0.05, T:0.40
Consensus pattern (22 bp):
TTTTTCCCTATAAGAACTCAAG
Found at i:8027848 original size:22 final size:22
Alignment explanation
Indices: 8027804--8027866 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 22
8027794 TGTTTCCTTG
* *
8027804 TATAATTACATAATGA-TA-TA
1 TATAATTACATATTTATTATTA
*
8027824 TATAAATTATATATTT-TTATTA
1 TAT-AATTACATATTTATTATTA
8027846 TATAATTACATATTTATTATT
1 TATAATTACATATTTATTATT
8027867 TTATTTATAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
20 3 0.09
21 22 0.63
22 10 0.29
ACGTcount: A:0.43, C:0.03, G:0.02, T:0.52
Consensus pattern (22 bp):
TATAATTACATATTTATTATTA
Found at i:8028119 original size:19 final size:19
Alignment explanation
Indices: 8028086--8028125 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
8028076 ACTAAAAATA
* *
8028086 TAATATATTTTATAAGTAT
1 TAATATATATAATAAGTAT
*
8028105 TAATATATATAATAATTAT
1 TAATATATATAATAAGTAT
8028124 TA
1 TA
8028126 TATTATAGAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (19 bp):
TAATATATATAATAAGTAT
Found at i:8029405 original size:22 final size:22
Alignment explanation
Indices: 8029366--8029415 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
8029356 CGATTTGATC
* *
8029366 TGAGCCTGACTTTGAAAAAATT
1 TGAGCCCGACTTTAAAAAAATT
*
8029388 TGAGCCCGATTTTAAAAAAATT
1 TGAGCCCGACTTTAAAAAAATT
8029410 TGAGCC
1 TGAGCC
8029416 TGAACAAACA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.30
Consensus pattern (22 bp):
TGAGCCCGACTTTAAAAAAATT
Found at i:8029802 original size:14 final size:14
Alignment explanation
Indices: 8029783--8029824 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
8029773 GAGCCCACCC
8029783 ATATTAATTTTTTT
1 ATATTAATTTTTTT
8029797 ATATT-ATTATTTTT
1 ATATTAATT-TTTTT
8029811 ATA-TAATTTTTTT
1 ATATTAATTTTTTT
8029824 A
1 A
8029825 AAATATAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
13 10 0.38
14 16 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (14 bp):
ATATTAATTTTTTT
Found at i:8030532 original size:24 final size:24
Alignment explanation
Indices: 8030482--8030533 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
8030472 AATCAAAGTC
* **
8030482 AAATATATTATGCTAATAAATGGT
1 AAATATATTATACTAATAAATACT
*
8030506 AAATATATTATACTCATAAATACT
1 AAATATATTATACTAATAAATACT
8030530 AAAT
1 AAAT
8030534 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.08, G:0.06, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:8033260 original size:24 final size:24
Alignment explanation
Indices: 8033211--8033262 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
8033201 AATCAAAGTC
* **
8033211 AAATATATTATGCTAATAAATGCT
1 AAATATATTATACTAATAAACACT
*
8033235 AAATATATTATACTTATAAACACT
1 AAATATATTATACTAATAAACACT
8033259 AAAT
1 AAAT
8033263 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.50, C:0.10, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATACTAATAAACACT
Found at i:8035780 original size:19 final size:19
Alignment explanation
Indices: 8035756--8035792 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8035746 TTGAAATTTC
*
8035756 TCCAATTTTCGATTTCAAG
1 TCCAATTTTCGAGTTCAAG
8035775 TCCAATTTTCGAGTTCAA
1 TCCAATTTTCGAGTTCAA
8035793 TTACCAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.22, G:0.11, T:0.41
Consensus pattern (19 bp):
TCCAATTTTCGAGTTCAAG
Found at i:8037407 original size:67 final size:67
Alignment explanation
Indices: 8037294--8037536 Score: 260
Period size: 66 Copynumber: 3.7 Consensus size: 67
8037284 CTGTCTTGGC
* * * * * * **
8037294 AGACTACACTAGTTGCCAAATCTCAGCTATGGTCTTACACCGTAATCCCCATATTTAATATCCTG
1 AGACTACACTGGTTGTCATAGCTGAGCTATGGTCTTACACCTTAATCCCCATATTTAACGTCCTG
8037359 GT
66 GT
* * * **
8037361 AGACTACATTGGTTGTCATAGCTGAGTTATGGTCTTACACCTTAATCCTCC--ATGTAGGGTCCT
1 AGACTACACTGGTTGTCATAGCTGAGCTATGGTCTTACACCTTAATCC-CCATATTTAACGTCCT
*
8037424 AGT
65 GGT
* * * *
8037427 AGACTACACTGGTTGCCATAGCCGAGCTATGG-CTTACCCCTTAATCCCCATGTTTAACGTCCTG
1 AGACTACACTGGTTGTCATAGCTGAGCTATGGTCTTACACCTTAATCCCCATATTTAACGTCCTG
8037491 GT
66 GT
* *
8037493 AGACTGCACTGATTGTCATAG-TCGAGCTATGGTCTTACACCTTA
1 AGACTACACTGGTTGTCATAGCT-GAGCTATGGTCTTACACCTTA
8037537 TAACCTCTTT
Statistics
Matches: 143, Mismatches: 28, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
64 2 0.01
65 14 0.10
66 75 0.52
67 50 0.35
68 2 0.01
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.32
Consensus pattern (67 bp):
AGACTACACTGGTTGTCATAGCTGAGCTATGGTCTTACACCTTAATCCCCATATTTAACGTCCTG
GT
Found at i:8037532 original size:132 final size:133
Alignment explanation
Indices: 8037294--8037536 Score: 339
Period size: 132 Copynumber: 1.8 Consensus size: 133
8037284 CTGTCTTGGC
* *
8037294 AGACTACACTAGTTGCCAAATCTCAGCTATGGTCTTACACCGTAATCCCCATATTTAATATCCTG
1 AGACTACACTAGTTGCCAAAGCTCAGCTATGGTCTTACACCGTAATCCCCATATTTAACATCCTG
* * *
8037359 GTAGACTACATTGGTTGTCATAGCTGAGTTATGGTCTTACACCTTAATCCTCCATGTAGGGTCCT
66 GTAGACTACACTGATTGTCATAGCTGAGCTATGGTCTTACACCTTAATCCTCCATGTAGGGTCCT
8037424 AGT
131 AGT
* * * * * *
8037427 AGACTACACTGGTTGCCATAGC-CGAGCTATGG-CTTACCCCTTAATCCCCATGTTTAACGTCCT
1 AGACTACACTAGTTGCCAAAGCTC-AGCTATGGTCTTACACCGTAATCCCCATATTTAACATCCT
*
8037490 GGTAGACTGCACTGATTGTCATAG-TCGAGCTATGGTCTTACACCTTA
65 GGTAGACTACACTGATTGTCATAGCT-GAGCTATGGTCTTACACCTTA
8037537 TAACCTCTTT
Statistics
Matches: 96, Mismatches: 12, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
131 1 0.01
132 68 0.71
133 27 0.28
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.32
Consensus pattern (133 bp):
AGACTACACTAGTTGCCAAAGCTCAGCTATGGTCTTACACCGTAATCCCCATATTTAACATCCTG
GTAGACTACACTGATTGTCATAGCTGAGCTATGGTCTTACACCTTAATCCTCCATGTAGGGTCCT
AGT
Found at i:8041077 original size:13 final size:14
Alignment explanation
Indices: 8041042--8041069 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8041032 AGTTGATATT
8041042 GAATTAACTCGTGA
1 GAATTAACTCGTGA
8041056 GAATTAACTCGTGA
1 GAATTAACTCGTGA
8041070 CATTAACTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (14 bp):
GAATTAACTCGTGA
Found at i:8043150 original size:27 final size:26
Alignment explanation
Indices: 8043094--8043151 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 26
8043084 TGTTTTTTAA
* * *
8043094 CTTTTTTTTTCCTTATTTTTCATTCT
1 CTTTTTTTCTCCTTATTTTTCACTCC
8043120 CTTTTGTTTCTCCTTATATTTTC-CTCC
1 CTTTT-TTTCTCCTTAT-TTTTCACTCC
8043147 CTTTT
1 CTTTT
8043152 CTATTTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 5 0.19
27 17 0.63
28 5 0.19
ACGTcount: A:0.07, C:0.24, G:0.02, T:0.67
Consensus pattern (26 bp):
CTTTTTTTCTCCTTATTTTTCACTCC
Found at i:8043311 original size:21 final size:21
Alignment explanation
Indices: 8043285--8043328 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
8043275 AAAAAAAAGA
8043285 TTAAAAAATCTTTATTCTAGG
1 TTAAAAAATCTTTATTCTAGG
*
8043306 TTAAAAAATCTTTATTCTGGG
1 TTAAAAAATCTTTATTCTAGG
8043327 TT
1 TT
8043329 TTCGTTGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.45
Consensus pattern (21 bp):
TTAAAAAATCTTTATTCTAGG
Found at i:8044152 original size:10 final size:10
Alignment explanation
Indices: 8044139--8044183 Score: 65
Period size: 10 Copynumber: 4.5 Consensus size: 10
8044129 GAAAAGAATG
8044139 GAAAATAAAA
1 GAAAATAAAA
8044149 GAAAA-AAAA
1 GAAAATAAAA
8044158 GAAAATTAAAA
1 GAAAA-TAAAA
*
8044169 GAACATAAAA
1 GAAAATAAAA
8044179 GAAAA
1 GAAAA
8044184 GAATTAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
9 9 0.29
10 14 0.45
11 8 0.26
ACGTcount: A:0.78, C:0.02, G:0.11, T:0.09
Consensus pattern (10 bp):
GAAAATAAAA
Found at i:8044167 original size:20 final size:20
Alignment explanation
Indices: 8044139--8044183 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 20
8044129 GAAAAGAATG
8044139 GAAAATAAAAGAA-AAAAAA
1 GAAAATAAAAGAACAAAAAA
*
8044158 GAAAATTAAAAGAACATAAAA
1 GAAAA-TAAAAGAACAAAAAA
8044179 GAAAA
1 GAAAA
8044184 GAATTAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 5 0.22
20 8 0.35
21 10 0.43
ACGTcount: A:0.78, C:0.02, G:0.11, T:0.09
Consensus pattern (20 bp):
GAAAATAAAAGAACAAAAAA
Found at i:8044183 original size:15 final size:15
Alignment explanation
Indices: 8044139--8044186 Score: 53
Period size: 15 Copynumber: 3.2 Consensus size: 15
8044129 GAAAAGAATG
8044139 GAAAATAAAAGAAAA
1 GAAAATAAAAGAAAA
* *
8044154 -AAAAGAAAATTAAAA
1 GAAAATAAAA-GAAAA
*
8044169 GAACATAAAAGAAAA
1 GAAAATAAAAGAAAA
8044184 GAA
1 GAA
8044187 TTAAATTGCT
Statistics
Matches: 26, Mismatches: 5, Indels: 4
0.74 0.14 0.11
Matches are distributed among these distances:
14 8 0.31
15 11 0.42
16 7 0.27
ACGTcount: A:0.77, C:0.02, G:0.12, T:0.08
Consensus pattern (15 bp):
GAAAATAAAAGAAAA
Found at i:8051031 original size:25 final size:24
Alignment explanation
Indices: 8050998--8051046 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
8050988 AATTTAAATT
*
8050998 TTATATTAATTTTAAATAAATATAA
1 TTATATTAATATTAAATAAA-ATAA
8051023 TTATATTAATATTAAATAAAATAA
1 TTATATTAATATTAAATAAAATAA
8051047 AAAATCCCTC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (24 bp):
TTATATTAATATTAAATAAAATAA
Found at i:8052509 original size:26 final size:26
Alignment explanation
Indices: 8052475--8052599 Score: 144
Period size: 26 Copynumber: 4.8 Consensus size: 26
8052465 TATTTTCTCG
* *
8052475 AAATTTTACCGGGGGTAAAATCGTGA
1 AAATTTTACCAGGGGTAAAATCGTCA
* *
8052501 AAATTTTACTAGGGGTAAAATCGTGA
1 AAATTTTACCAGGGGTAAAATCGTCA
**
8052527 AAATTTTACCAGGGGTAAAATTATCA
1 AAATTTTACCAGGGGTAAAATCGTCA
* * *
8052553 GAATTTTACCAGTGGTAAAATTGTCA
1 AAATTTTACCAGGGGTAAAATCGTCA
* *
8052579 GAATTTTACC-TGGGTAAAATC
1 AAATTTTACCAGGGGTAAAATC
8052600 ATAAAAAATT
Statistics
Matches: 87, Mismatches: 12, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
25 8 0.09
26 79 0.91
ACGTcount: A:0.37, C:0.11, G:0.21, T:0.31
Consensus pattern (26 bp):
AAATTTTACCAGGGGTAAAATCGTCA
Found at i:8058521 original size:43 final size:42
Alignment explanation
Indices: 8058430--8058557 Score: 110
Period size: 36 Copynumber: 3.1 Consensus size: 42
8058420 TTACGTATGG
* * *
8058430 TCACTTATCATTTGTC-CCTGATCAGATAAGTGTAGCTAAGC-TA
1 TCACTTATCATTTGTCACTTGATCAGATAAGTATA-AT-A-CTTA
*
8058473 CCACTTATCACTTTGTCACTTGATCAGATAAGTATAATACTTA
1 TCACTTATCA-TTTGTCACTTGATCAGATAAGTATAATACTTA
**
8058516 TCAC---T--TTT-TCACTTGATCAGATAAGTATAGCACTTA
1 TCACTTATCATTTGTCACTTGATCAGATAAGTATAATACTTA
8058552 TCACTT
1 TCACTT
8058558 TTTCACTTGA
Statistics
Matches: 73, Mismatches: 7, Indels: 15
0.77 0.07 0.16
Matches are distributed among these distances:
36 30 0.41
37 3 0.04
40 1 0.01
42 1 0.01
43 15 0.21
44 7 0.10
45 16 0.22
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.38
Consensus pattern (42 bp):
TCACTTATCATTTGTCACTTGATCAGATAAGTATAATACTTA
Found at i:8058522 original size:36 final size:36
Alignment explanation
Indices: 8058474--8058577 Score: 181
Period size: 36 Copynumber: 2.9 Consensus size: 36
8058464 GCTAAGCTAC
*
8058474 CACTTATCACTTTGTCACTTGATCAGATAAGTATAA
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAA
* *
8058510 TACTTATCACTTTTTCACTTGATCAGATAAGTATAG
1 CACTTATCACTTTTTCACTTGATCAGATAAGTATAA
8058546 CACTTATCACTTTTTCACTTGATCAGATAAGT
1 CACTTATCACTTTTTCACTTGATCAGATAAGT
8058578 GTAGCTAAAG
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 64 1.00
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (36 bp):
CACTTATCACTTTTTCACTTGATCAGATAAGTATAA
Found at i:8064251 original size:49 final size:49
Alignment explanation
Indices: 8064196--8064294 Score: 180
Period size: 49 Copynumber: 2.0 Consensus size: 49
8064186 ACATATGGAA
* *
8064196 ATTCATAATTCATGTATATATCAATACAAAACATATACACTCAAAGTTT
1 ATTCATAATTCATGTATATATCAATACAAAACATAAACACTCAAAATTT
8064245 ATTCATAATTCATGTATATATCAATACAAAACATAAACACTCAAAATTT
1 ATTCATAATTCATGTATATATCAATACAAAACATAAACACTCAAAATTT
8064294 A
1 A
8064295 ATCACACGAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 48 1.00
ACGTcount: A:0.47, C:0.16, G:0.03, T:0.33
Consensus pattern (49 bp):
ATTCATAATTCATGTATATATCAATACAAAACATAAACACTCAAAATTT
Found at i:8067661 original size:20 final size:21
Alignment explanation
Indices: 8067633--8067730 Score: 141
Period size: 20 Copynumber: 4.9 Consensus size: 21
8067623 AATGCTATAT
* *
8067633 AGAGGCACCGTAGTGCAAA-C
1 AGAGACACCGAAGTGCAAATC
8067653 AGAGACACCGAAGTG-AAATC
1 AGAGACACCGAAGTGCAAATC
8067673 AGAGACACCGAAGTGCAAA-C
1 AGAGACACCGAAGTGCAAATC
*
8067693 AGAGAAACCGAAGTG-AAATC
1 AGAGACACCGAAGTGCAAATC
8067713 AGAGACACCGAAGTGCAA
1 AGAGACACCGAAGTGCAA
8067731 TCTCATACAA
Statistics
Matches: 70, Mismatches: 4, Indels: 7
0.86 0.05 0.09
Matches are distributed among these distances:
19 6 0.09
20 59 0.84
21 5 0.07
ACGTcount: A:0.44, C:0.21, G:0.27, T:0.08
Consensus pattern (21 bp):
AGAGACACCGAAGTGCAAATC
Found at i:8067688 original size:40 final size:40
Alignment explanation
Indices: 8067633--8067730 Score: 169
Period size: 40 Copynumber: 2.5 Consensus size: 40
8067623 AATGCTATAT
* * *
8067633 AGAGGCACCGTAGTGCAAACAGAGACACCGAAGTGAAATC
1 AGAGACACCGAAGTGCAAACAGAGAAACCGAAGTGAAATC
8067673 AGAGACACCGAAGTGCAAACAGAGAAACCGAAGTGAAATC
1 AGAGACACCGAAGTGCAAACAGAGAAACCGAAGTGAAATC
8067713 AGAGACACCGAAGTGCAA
1 AGAGACACCGAAGTGCAA
8067731 TCTCATACAA
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.44, C:0.21, G:0.27, T:0.08
Consensus pattern (40 bp):
AGAGACACCGAAGTGCAAACAGAGAAACCGAAGTGAAATC
Found at i:8074940 original size:6 final size:6
Alignment explanation
Indices: 8074929--8074957 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
8074919 TTTAGAAATG
8074929 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
8074958 CATGTAACTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:8075007 original size:19 final size:18
Alignment explanation
Indices: 8074983--8075036 Score: 74
Period size: 19 Copynumber: 3.0 Consensus size: 18
8074973 ATTGATTTAT
8074983 TAATTTTTTTTAAAATTA
1 TAATTTTTTTTAAAATTA
*
8075001 CTAATTTATTTTAAAA-TA
1 -TAATTTTTTTTAAAATTA
*
8075019 TAATTTTTTTAAAAATTA
1 TAATTTTTTTTAAAATTA
8075037 ATATCGTAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 13 0.42
18 4 0.13
19 14 0.45
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.56
Consensus pattern (18 bp):
TAATTTTTTTTAAAATTA
Found at i:8075033 original size:17 final size:17
Alignment explanation
Indices: 8074987--8075038 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
8074977 ATTTATTAAT
*
8074987 TTTTTTTAAAATTACTAA
1 TTTTTTTAAAAATA-TAA
8075005 TTTATTTT-AAAATATAA
1 TTT-TTTTAAAAATATAA
8075022 TTTTTTTAAAAAT-TAA
1 TTTTTTTAAAAATATAA
8075038 T
1 T
8075039 ATCGTAGAGA
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
16 8 0.26
17 11 0.35
18 8 0.26
19 4 0.13
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (17 bp):
TTTTTTTAAAAATATAA
Found at i:8081590 original size:9 final size:8
Alignment explanation
Indices: 8081558--8081587 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
8081548 TAAATATTAT
8081558 TTAAAATA
1 TTAAAATA
8081566 TTAAAATA
1 TTAAAATA
8081574 TTAAAATA
1 TTAAAATA
8081582 TTAAAA
1 TTAAAA
8081588 ATAGAATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (8 bp):
TTAAAATA
Found at i:8086735 original size:8 final size:7
Alignment explanation
Indices: 8086704--8086734 Score: 53
Period size: 7 Copynumber: 4.3 Consensus size: 7
8086694 ATATTTTATC
8086704 TTTAATT
1 TTTAATT
8086711 TTTAATT
1 TTTAATT
8086718 TTTAATT
1 TTTAATT
8086725 TTATAATT
1 TT-TAATT
8086733 TT
1 TT
8086735 AAAATATTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 16 0.70
8 7 0.30
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (7 bp):
TTTAATT
Found at i:8086775 original size:19 final size:18
Alignment explanation
Indices: 8086735--8086778 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
8086725 TTATAATTTT
* *
8086735 AAAATATTAAACCATAAT
1 AAAATATTAAACAATAAC
*
8086753 AAAATATTAAAATAATAAC
1 AAAATATT-AAACAATAAC
8086772 AAAATAT
1 AAAATAT
8086779 AATATTTGAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.66, C:0.07, G:0.00, T:0.27
Consensus pattern (18 bp):
AAAATATTAAACAATAAC
Found at i:8087141 original size:117 final size:117
Alignment explanation
Indices: 8087004--8087230 Score: 289
Period size: 117 Copynumber: 1.9 Consensus size: 117
8086994 ACTAGAACTT
* * * * *
8087004 CTATCACACGCGTATATGTGTGGAAACCA-AAGATTTAGAATATAAATATGT-GTTTAACAAT-A
1 CTATCACACCCATATATGTGTGGAAACCACAA-ATTTAGAACACAAATATGTACTTTAA-AATCA
* *
8087066 GCATACAATAAACAATAAAATGTATGGTTTGAAACTAATTAATCATAAAGAAATC
64 -CATACAATAAACAATAAAACGTATGGTTTGAAACTAATTAATAATAAAGAAATC
* * *
8087121 CTATCACACCCATATGTGTGTGGAAATCACAAATTTAGAACACAAATATTTACTTTAAAATCACA
1 CTATCACACCCATATATGTGTGGAAACCACAAATTTAGAACACAAATATGTACTTTAAAATCACA
* * *
8087186 TACAATAAATAATGAAACGTATGGTTTGAAGCTAATTAATAATAA
66 TACAATAAACAATAAAACGTATGGTTTGAAACTAATTAATAATAA
8087231 TGATGAAATA
Statistics
Matches: 94, Mismatches: 13, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
117 86 0.91
118 8 0.09
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.30
Consensus pattern (117 bp):
CTATCACACCCATATATGTGTGGAAACCACAAATTTAGAACACAAATATGTACTTTAAAATCACA
TACAATAAACAATAAAACGTATGGTTTGAAACTAATTAATAATAAAGAAATC
Found at i:8088363 original size:15 final size:15
Alignment explanation
Indices: 8088343--8088379 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
8088333 AAATATTAAA
8088343 ATAATATTAAAATGT
1 ATAATATTAAAATGT
*
8088358 ATAATATTAATATGT
1 ATAATATTAAAATGT
8088373 AT-ATATT
1 ATAATATT
8088380 TTCTAATTGA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
14 5 0.24
15 16 0.76
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (15 bp):
ATAATATTAAAATGT
Found at i:8091075 original size:18 final size:19
Alignment explanation
Indices: 8091041--8091076 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
8091031 AAAAAAATTA
8091041 AAATTCAAAATATTTATAG
1 AAATTCAAAATATTTATAG
*
8091060 AAATTCCAAA-ATTTATA
1 AAATTCAAAATATTTATA
8091077 TTTTTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.53, C:0.08, G:0.03, T:0.36
Consensus pattern (19 bp):
AAATTCAAAATATTTATAG
Found at i:8091088 original size:18 final size:19
Alignment explanation
Indices: 8091067--8091109 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
8091057 TAGAAATTCC
*
8091067 AAAATTTAT-ATTTTTTAA
1 AAAATTTATAAATTTTTAA
8091085 AAAA-TTATAAATTTTTAA
1 AAAATTTATAAATTTTTAA
8091103 AAAATTT
1 AAAATTT
8091110 CCAAAGAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 4 0.18
18 16 0.73
19 2 0.09
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
AAAATTTATAAATTTTTAA
Found at i:8091152 original size:7 final size:8
Alignment explanation
Indices: 8091131--8091156 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
8091121 ATAAAGAAAG
8091131 TTAAAAAT
1 TTAAAAAT
8091139 TTAAAAAT
1 TTAAAAAT
8091147 TTAAAAAT
1 TTAAAAAT
8091155 TT
1 TT
8091157 TCTAAAATAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (8 bp):
TTAAAAAT
Found at i:8096891 original size:13 final size:13
Alignment explanation
Indices: 8096873--8096898 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8096863 TAAAAGTATG
8096873 TATATATATTATA
1 TATATATATTATA
8096886 TATATATATTATA
1 TATATATATTATA
8096899 AAATAAATGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
TATATATATTATA
Found at i:8096961 original size:10 final size:10
Alignment explanation
Indices: 8096946--8096975 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
8096936 ATGCAAAATT
8096946 AAGAAAGAAA
1 AAGAAAGAAA
*
8096956 AAGAAAGAGA
1 AAGAAAGAAA
8096966 AAGAAAGAAA
1 AAGAAAGAAA
8096976 TAGAGAAAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.23, T:0.00
Consensus pattern (10 bp):
AAGAAAGAAA
Found at i:8096968 original size:16 final size:16
Alignment explanation
Indices: 8096947--8096990 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
8096937 TGCAAAATTA
8096947 AGAAAGAAA-AAGAAAG
1 AGAAAGAAAGAA-AAAG
*
8096963 AGAAAGAAAGAAATAG
1 AGAAAGAAAGAAAAAG
*
8096979 AGAAAGGAAGAA
1 AGAAAGAAAGAA
8096991 CCACACACGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
16 23 0.92
17 2 0.08
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.02
Consensus pattern (16 bp):
AGAAAGAAAGAAAAAG
Found at i:8097467 original size:13 final size:13
Alignment explanation
Indices: 8097425--8097467 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
8097415 AAATATTCAA
8097425 TGTGAAATTGAAT
1 TGTGAAATTGAAT
* *
8097438 TGTGTATATTCAA-
1 TGTG-AAATTGAAT
8097451 TGTGAAATTGAAT
1 TGTGAAATTGAAT
8097464 TGTG
1 TGTG
8097468 TTGTATTGAT
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
12 6 0.25
13 12 0.50
14 6 0.25
ACGTcount: A:0.33, C:0.02, G:0.23, T:0.42
Consensus pattern (13 bp):
TGTGAAATTGAAT
Found at i:8097479 original size:26 final size:26
Alignment explanation
Indices: 8097417--8097468 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
8097407 AAAAATTGAA
8097417 ATATTCAATGTGAAATTGAATTGTGT
1 ATATTCAATGTGAAATTGAATTGTGT
8097443 ATATTCAATGTGAAATTGAATTGTGT
1 ATATTCAATGTGAAATTGAATTGTGT
8097469 TGTATTGATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.35, C:0.04, G:0.19, T:0.42
Consensus pattern (26 bp):
ATATTCAATGTGAAATTGAATTGTGT
Found at i:8107962 original size:26 final size:26
Alignment explanation
Indices: 8107932--8107987 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
8107922 AAATTTATCG
*
8107932 AAATTTTACTAG-GGGTAAAATTGTCA
1 AAATTTTA-TAGAGAGTAAAATTGTCA
* *
8107958 AAATTTTATCGAGAGTAAAATTGTCT
1 AAATTTTATAGAGAGTAAAATTGTCA
8107984 AAAT
1 AAAT
8107988 CAAAATTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.36
Consensus pattern (26 bp):
AAATTTTATAGAGAGTAAAATTGTCA
Found at i:8115367 original size:13 final size:13
Alignment explanation
Indices: 8115351--8115412 Score: 72
Period size: 13 Copynumber: 4.6 Consensus size: 13
8115341 TCTTATTCTT
8115351 AAAAAAAAACGCA
1 AAAAAAAAACGCA
*
8115364 AAAAAAAAAAG-A
1 AAAAAAAAACGCA
8115376 AAAAGCAAAAACCGCA
1 AAAA--AAAAA-CGCA
*
8115392 AAAAAAAACCGCA
1 AAAAAAAAACGCA
8115405 AAAAAAAA
1 AAAAAAAA
8115413 GTTGCCTACC
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
12 5 0.12
13 22 0.52
14 9 0.21
15 1 0.02
16 5 0.12
ACGTcount: A:0.77, C:0.15, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAAAAAAACGCA
Found at i:8115378 original size:19 final size:18
Alignment explanation
Indices: 8115351--8115386 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
8115341 TCTTATTCTT
*
8115351 AAAAAAAAACGCAAAAAA
1 AAAAAAAAAAGCAAAAAA
8115369 AAAAAGAAAAAGCAAAAA
1 AAAAA-AAAAAGCAAAAA
8115387 CCGCAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 5 0.31
19 11 0.69
ACGTcount: A:0.83, C:0.08, G:0.08, T:0.00
Consensus pattern (18 bp):
AAAAAAAAAAGCAAAAAA
Found at i:8123009 original size:15 final size:15
Alignment explanation
Indices: 8122989--8123018 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8122979 AACATCTGTA
8122989 CATTATTTCAAATAT
1 CATTATTTCAAATAT
*
8123004 CATTATTTCACATAT
1 CATTATTTCAAATAT
8123019 TTCTCTTCAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.17, G:0.00, T:0.47
Consensus pattern (15 bp):
CATTATTTCAAATAT
Found at i:8124627 original size:40 final size:40
Alignment explanation
Indices: 8124572--8124651 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
8124562 ACACCGTACA
* **
8124572 AGGTTTTATATGAACGTAGACGTAGATCTCTGTTATATTG
1 AGGTTTTATACGAACGTAGACGTAGATCTCCATTATATTG
*
8124612 AGGTTTTATACGAACGTAGATGTAGATCTCCATTATATTG
1 AGGTTTTATACGAACGTAGACGTAGATCTCCATTATATTG
8124652 GTCCGATTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (40 bp):
AGGTTTTATACGAACGTAGACGTAGATCTCCATTATATTG
Found at i:8138324 original size:3 final size:3
Alignment explanation
Indices: 8138316--8138346 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
8138306 CTCTTAGCTT
8138316 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
8138347 AGATTTTTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:8149469 original size:15 final size:14
Alignment explanation
Indices: 8149451--8149480 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
8149441 TTTGTATTCC
8149451 ATCTTTTTTTTCTGT
1 ATCTTTTTTTT-TGT
8149466 ATCTTTTTTTTTGT
1 ATCTTTTTTTTTGT
8149480 A
1 A
8149481 AACATTACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.10, C:0.10, G:0.07, T:0.73
Consensus pattern (14 bp):
ATCTTTTTTTTTGT
Done.