Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 32 of 173
Found at i:8418285 original size:19 final size:18
Alignment explanation
Indices: 8418246--8418285 Score: 62
Period size: 19 Copynumber: 2.2 Consensus size: 18
8418236 ATCAATAAAT
*
8418246 AAATTAAAATTTATAAAA
1 AAATTAAAATTTAAAAAA
8418264 AAATTCAAAATTTAAAAAA
1 AAATT-AAAATTTAAAAAA
8418283 AAA
1 AAA
8418286 ACCTATAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 5 0.25
19 15 0.75
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
AAATTAAAATTTAAAAAA
Found at i:8432144 original size:48 final size:47
Alignment explanation
Indices: 8432018--8432152 Score: 170
Period size: 47 Copynumber: 2.9 Consensus size: 47
8432008 TAACTGTGAT
* *
8432018 TATGTGGCCATTATC-AGCAATTATGTGGTGGCTTGTCCACGATGTGC
1 TATGTGACCATTATCGA-CAATTATGTGGTGGCTTGTCCACGATATGC
*
8432065 TATGTGGCCATTATCGACAATTATGTGGTGGCTCT-TCCACGATAT-C
1 TATGTGACCATTATCGACAATTATGTGGTGGCT-TGTCCACGATATGC
8432111 TTATGTGACCATTTATCGAC-ATCTATGTGGTGGCTTGTCCAC
1 -TATGTGACCA-TTATCGACAAT-TATGTGGTGGCTTGTCCAC
8432153 AAATGGTGTG
Statistics
Matches: 80, Mismatches: 2, Indels: 11
0.86 0.02 0.12
Matches are distributed among these distances:
46 1 0.01
47 52 0.65
48 27 0.34
ACGTcount: A:0.20, C:0.21, G:0.24, T:0.36
Consensus pattern (47 bp):
TATGTGACCATTATCGACAATTATGTGGTGGCTTGTCCACGATATGC
Found at i:8445140 original size:21 final size:21
Alignment explanation
Indices: 8445114--8445164 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
8445104 ACATACTTAA
*
8445114 AATAAGAATAATAACAAA-AGT
1 AATAAGAATAATAA-AAAGAAT
*
8445135 AATAAGAAGAATAAAAAGAAT
1 AATAAGAATAATAAAAAGAAT
8445156 AATAA-AATA
1 AATAAGAATA
8445165 TATAGTAACC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
20 6 0.23
21 20 0.77
ACGTcount: A:0.71, C:0.02, G:0.10, T:0.18
Consensus pattern (21 bp):
AATAAGAATAATAAAAAGAAT
Found at i:8453212 original size:3 final size:3
Alignment explanation
Indices: 8453197--8453289 Score: 87
Period size: 3 Copynumber: 31.0 Consensus size: 3
8453187 TTTAAGATTT
* * ** * * * * *
8453197 TTA TTA TTG TTA TTA TTA TTA ATA CCA TCA TCA TCA TCA TCA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
**
8453245 TTA TTA TTA TTA TTA CCA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8453290 AATTGTTTTA
Statistics
Matches: 79, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 79 1.00
ACGTcount: A:0.33, C:0.10, G:0.01, T:0.56
Consensus pattern (3 bp):
TTA
Found at i:8458662 original size:14 final size:14
Alignment explanation
Indices: 8458643--8458673 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
8458633 TGAGGAGCCA
8458643 TAGAGATGAGGGAG
1 TAGAGATGAGGGAG
8458657 TAGAGATGAGGGAG
1 TAGAGATGAGGGAG
8458671 TAG
1 TAG
8458674 GGGATGGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.35, C:0.00, G:0.48, T:0.16
Consensus pattern (14 bp):
TAGAGATGAGGGAG
Found at i:8458891 original size:24 final size:24
Alignment explanation
Indices: 8458845--8458891 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
8458835 TAATTATCTT
* * * *
8458845 AATTAGAGTGATTAAATTGAAAAA
1 AATTAGAATGACTAAAATAAAAAA
8458869 AATTAGAATGACTAAAATAAAAA
1 AATTAGAATGACTAAAATAAAAA
8458892 TAACGCTATT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.60, C:0.02, G:0.13, T:0.26
Consensus pattern (24 bp):
AATTAGAATGACTAAAATAAAAAA
Found at i:8461073 original size:17 final size:16
Alignment explanation
Indices: 8461043--8461082 Score: 62
Period size: 17 Copynumber: 2.4 Consensus size: 16
8461033 AATTTAGAAA
8461043 AATTTTTGAATTAGTG
1 AATTTTTGAATTAGTG
*
8461059 AATTTTGTGATTTAGTG
1 AATTTT-TGAATTAGTG
8461076 AATTTTT
1 AATTTTT
8461083 ACGATTTAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.32
17 15 0.68
ACGTcount: A:0.28, C:0.00, G:0.17, T:0.55
Consensus pattern (16 bp):
AATTTTTGAATTAGTG
Found at i:8462405 original size:45 final size:46
Alignment explanation
Indices: 8462318--8462501 Score: 307
Period size: 46 Copynumber: 4.0 Consensus size: 46
8462308 TGGAAAAGTG
*
8462318 TGAAAAGTAGGTATGGTGTTTCGGTGAAGAAAACCATACTGAGTTA
1 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
8462364 TGAAAAGTAGGTATGGTGTTTC-GTGAAGAAAACCATACTGAGTTA
1 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
*
8462409 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTG
1 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
** * *
8462455 TGAAAAGTAGGTATGGTAATTCCGTGAAGAAAGCCATACTGAGTTA
1 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
8462501 T
1 T
8462502 AGCAATGTGA
Statistics
Matches: 131, Mismatches: 6, Indels: 2
0.94 0.04 0.01
Matches are distributed among these distances:
45 45 0.34
46 86 0.66
ACGTcount: A:0.35, C:0.09, G:0.27, T:0.28
Consensus pattern (46 bp):
TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
Found at i:8465376 original size:46 final size:44
Alignment explanation
Indices: 8465292--8465506 Score: 223
Period size: 36 Copynumber: 5.1 Consensus size: 44
8465282 CTTGTCCCTC
*
8465292 ATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTTG
1 ATCAGATAAGTGTAGCTAGGCTA-CACTTATCATTTTGTCACTTG
8465337 ATCAGATAAGTGTAGCTAAGGCTAACACTTATCATTTTGTCACTTG
1 ATCAGATAAGTGTAGCT-AGGCT-ACACTTATCATTTTGTCACTTG
8465383 ATCAGATAA--GTA--TA-G---CACTTATCACTTTT-TCACTTG
1 ATCAGATAAGTGTAGCTAGGCTACACTTATCA-TTTTGTCACTTG
8465419 ATCAGATAA--GTA--TA-G---CACTTATCACTTTT-TCACTTG
1 ATCAGATAAGTGTAGCTAGGCTACACTTATCA-TTTTGTCACTTG
*
8465455 ATCAGATAAGTGTAGCTAAGGCTAACACTTATCACTTTGTCACTTG
1 ATCAGATAAGTGTAGCT-AGGCT-ACACTTATCATTTTGTCACTTG
8465501 ATCAGA
1 ATCAGA
8465507 AGTACTCAAA
Statistics
Matches: 154, Mismatches: 2, Indels: 27
0.84 0.01 0.15
Matches are distributed among these distances:
36 61 0.40
37 4 0.03
38 3 0.02
40 2 0.01
41 2 0.01
42 2 0.01
44 3 0.02
45 20 0.13
46 56 0.36
47 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (44 bp):
ATCAGATAAGTGTAGCTAGGCTACACTTATCATTTTGTCACTTG
Found at i:8470983 original size:21 final size:21
Alignment explanation
Indices: 8470942--8470984 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
8470932 AATAAAGTAG
*
8470942 ATTATATATTATTTTTATAGT
1 ATTATATATTATATTTATAGT
8470963 ATTATATATTATGATTT-TAGT
1 ATTATATATTAT-ATTTATAGT
8470984 A
1 A
8470985 AATTCATATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.35, C:0.00, G:0.07, T:0.58
Consensus pattern (21 bp):
ATTATATATTATATTTATAGT
Found at i:8471026 original size:17 final size:18
Alignment explanation
Indices: 8471001--8471046 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 18
8470991 TATAAGAATA
*
8471001 ATTATATTA-AGAATTTT
1 ATTAAATTATAGAATTTT
* *
8471018 ATTAAATTATATATTTTT
1 ATTAAATTATAGAATTTT
8471036 ATTAAATTATA
1 ATTAAATTATA
8471047 TTTAATAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
17 8 0.32
18 17 0.68
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.54
Consensus pattern (18 bp):
ATTAAATTATAGAATTTT
Found at i:8471070 original size:66 final size:66
Alignment explanation
Indices: 8471000--8471194 Score: 202
Period size: 66 Copynumber: 3.1 Consensus size: 66
8470990 ATATAAGAAT
8471000 AATTATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTT
1 AATTATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTT
8471065 A
66 A
* * * * * * * *
8471066 AATTATATTTTATAGTATTA-TATATTAT-GA-TTTTAGTAAATTCATA--TAA-GA--A-TA-T
1 AATTATA-TTAAGAATTTTATTAAATTATATATTTTTATTAAATT-ATATTTAATAATTATTATT
8471121 TT-
64 TTA
8471123 -A--ATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTT
1 AATTATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTT
8471185 A
66 A
8471186 AATTATATT
1 AATTATATT
8471195 TTATAGTATT
Statistics
Matches: 97, Mismatches: 16, Indels: 32
0.67 0.11 0.22
Matches are distributed among these distances:
53 8 0.08
54 10 0.10
55 4 0.04
56 12 0.12
57 3 0.03
58 4 0.04
59 2 0.02
60 2 0.02
61 2 0.02
62 4 0.04
63 3 0.03
64 12 0.12
65 4 0.04
66 19 0.20
67 8 0.08
ACGTcount: A:0.42, C:0.01, G:0.03, T:0.54
Consensus pattern (66 bp):
AATTATATTAAGAATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTT
A
Found at i:8471075 original size:120 final size:120
Alignment explanation
Indices: 8470949--8471269 Score: 619
Period size: 120 Copynumber: 2.7 Consensus size: 120
8470939 TAGATTATAT
*
8470949 ATTAT-TTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATT-ATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
8471012 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAA
66 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAA
8471067 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
8471132 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAA
66 AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAA
8471187 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
8471252 AATTTTATTAAATTATAT
66 AATTTTATTAAATTATAT
8471270 TTTATAGTAT
Statistics
Matches: 200, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
118 5 0.03
119 49 0.25
120 146 0.73
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.53
Consensus pattern (120 bp):
ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
AATTTTATTAAATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAA
Found at i:8471086 original size:59 final size:59
Alignment explanation
Indices: 8471023--8471211 Score: 213
Period size: 59 Copynumber: 3.2 Consensus size: 59
8471013 ATTTTATTAA
8471023 ATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGT
1 ATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGT
* * ** * * * * * * *
8471082 ATTATATATTATGATTTTAGTAAATTCATATAA-GAATA-TTTAATATTAAGAATTTTATTA-A
1 ATTATATATTTTTATTAAATTATATTTA-ATAATTATTATTTTAA-ATT-A-TATTTTA-TAGT
8471143 ATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGT
1 ATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGT
8471202 ATTATATATT
1 ATTATATATT
8471212 ATGATTTTAG
Statistics
Matches: 100, Mismatches: 22, Indels: 16
0.72 0.16 0.12
Matches are distributed among these distances:
58 7 0.07
59 43 0.43
60 10 0.10
61 33 0.33
62 7 0.07
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.56
Consensus pattern (59 bp):
ATTATATATTTTTATTAAATTATATTTAATAATTATTATTTTAAATTATATTTTATAGT
Found at i:8471269 original size:59 final size:58
Alignment explanation
Indices: 8470967--8471270 Score: 245
Period size: 64 Copynumber: 5.1 Consensus size: 58
8470957 TATAGTATTA
*
8470967 TATATTATGATTTTAGTAAATTCATATAAGAATAATTATATTAAGAATTTTATTAAAT
1 TATATTATGATTTTAGTAAATTCATATAAGAATATTTATATTAAGAATTTTATTAAAT
* * * * *
8471025 TATA-TAT--TTTTATTAAATT-ATATTTAATAAT-TATTATTTTAAATTATATTTTA-TAGTAT
1 TATATTATGATTTTAGTAAATTCATA--TAAGAATAT-TTATATT-AA-GA-ATTTTATTA--AA
8471084 T
58 T
8471085 ATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
1 -TATATTATGATTTTAGTAAATTCATATAAGAATATTT-ATATTAAGAATTTTATTAAAT
* * * * *
8471145 TATA-TAT--TTTTATTAAATT-ATATTTAATAAT-TATTATTTTAAATTATATTTTA-TAGTAT
1 TATATTATGATTTTAGTAAATTCATA--TAAGAATAT-TTATATT-AA-GA-ATTTTATTA--AA
8471204 T
58 T
8471205 ATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAGAATTTTATTAAAT
1 -TATATTATGATTTTAGTAAATTCATATAAGAATATTT-ATATTAAGAATTTTATTAAAT
8471265 TATATT
1 TATATT
8471271 TTATAGTATT
Statistics
Matches: 193, Mismatches: 21, Indels: 63
0.70 0.08 0.23
Matches are distributed among these distances:
54 3 0.02
55 14 0.07
56 28 0.15
57 15 0.08
58 13 0.07
59 22 0.11
60 8 0.04
61 20 0.10
62 12 0.06
63 20 0.10
64 32 0.17
65 6 0.03
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (58 bp):
TATATTATGATTTTAGTAAATTCATATAAGAATATTTATATTAAGAATTTTATTAAAT
Found at i:8471271 original size:76 final size:76
Alignment explanation
Indices: 8470949--8471345 Score: 346
Period size: 76 Copynumber: 5.1 Consensus size: 76
8470939 TAGATTATAT
*
8470949 ATTAT-TTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAATT-ATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
8471012 AATTTTATTAA
66 AATTTTATTAA
* * * * ***
8471023 ATTATATATTTTTATTAAATTATAT-TTAATAATTATTATTTTAAATT-ATAT-TTTATAGTATT
1 ATTATAT-TTTATAGT--ATTATATATT-ATGATT-TTA--GTAAATTCATATAAGAATA-T-TT
* *
8471085 ATATATTATG-ATTTTAGTAA
57 A-ATATTAAGAATTTTATTAA
* * * * * **** *
8471105 ATTCATA--TAAGAATATT-TAATATTAAGAATTTTATTAAATT-ATATATTTTTATTAAATTAT
1 ATT-ATATTTTATAGTATTAT-ATATTATG-ATTTTAGTAAATTCATATAAGAATATT---TAAT
*
8471166 ATTTAATAATTATTATTTTAA
60 A-TTAAGAATT-TTA--TTAA
8471187 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
8471252 AATTTTATTAA
66 AATTTTATTAA
*
8471263 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAA
1 ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
8471328 AATTTTATTAA
66 AATTTTATTAA
8471339 ATTATAT
1 ATTATAT
8471346 ATTTTTATTA
Statistics
Matches: 261, Mismatches: 33, Indels: 56
0.75 0.09 0.16
Matches are distributed among these distances:
74 5 0.02
75 2 0.01
76 104 0.40
77 11 0.04
78 28 0.11
79 22 0.08
80 14 0.05
81 11 0.04
82 30 0.11
83 33 0.13
84 1 0.00
ACGTcount: A:0.42, C:0.01, G:0.05, T:0.52
Consensus pattern (76 bp):
ATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATATTTAATATTAAG
AATTTTATTAA
Found at i:8471614 original size:16 final size:16
Alignment explanation
Indices: 8471595--8471643 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
8471585 ACTATTAAGC
8471595 CTCTATTCCATTACAG
1 CTCTATTCCATTACAG
* *
8471611 CTCTATTCAATTACAC
1 CTCTATTCCATTACAG
*
8471627 CTTTATTCCATTACAG
1 CTCTATTCCATTACAG
8471643 C
1 C
8471644 GAACCAAACG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.27, C:0.31, G:0.04, T:0.39
Consensus pattern (16 bp):
CTCTATTCCATTACAG
Found at i:8482779 original size:6 final size:6
Alignment explanation
Indices: 8482768--8482793 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
8482758 TTGAGTTGAG
8482768 TTCATC TTCATC TTCATC TTCATC TT
1 TTCATC TTCATC TTCATC TTCATC TT
8482794 TCTTACAGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.31, G:0.00, T:0.54
Consensus pattern (6 bp):
TTCATC
Found at i:8485497 original size:3 final size:3
Alignment explanation
Indices: 8485489--8485591 Score: 55
Period size: 3 Copynumber: 32.3 Consensus size: 3
8485479 GTAAATAAAT
* * * * *
8485489 TTA TTA TTA TTA TTA TTA TTA TTA CTC TTA TTTA TTTA TTTA CTA CTC
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA -TTA -TTA TTA TTA
* * * *
8485537 TTA TTC GT- TTA TTAA TGTA TGA TTA TTTA TTA TTA TTC TTA GTTA TTA
1 TTA TTA TTA TTA TT-A T-TA TTA TTA -TTA TTA TTA TTA TTA -TTA TTA
8485585 TTA TTA T
1 TTA TTA T
8485592 CACTATGTAA
Statistics
Matches: 79, Mismatches: 15, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
2 1 0.01
3 56 0.71
4 21 0.27
5 1 0.01
ACGTcount: A:0.27, C:0.07, G:0.04, T:0.62
Consensus pattern (3 bp):
TTA
Found at i:8488020 original size:17 final size:17
Alignment explanation
Indices: 8487998--8488033 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
8487988 TAGGAACATG
*
8487998 GCTAAGACAGTTGTAGT
1 GCTAAGACAATTGTAGT
8488015 GCTAAGACAATTGTAGT
1 GCTAAGACAATTGTAGT
8488032 GC
1 GC
8488034 GTTTCTTTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.28
Consensus pattern (17 bp):
GCTAAGACAATTGTAGT
Found at i:8488851 original size:30 final size:30
Alignment explanation
Indices: 8488817--8488882 Score: 96
Period size: 30 Copynumber: 2.2 Consensus size: 30
8488807 GTTGTTTTTG
*
8488817 ATAAGGACACTGAATATTATCAAATGAAAA
1 ATAAGGAAACTGAATATTATCAAATGAAAA
* * *
8488847 ATAAGGAAATTGAATATTTTCAAATGAAAG
1 ATAAGGAAACTGAATATTATCAAATGAAAA
8488877 ATAAGG
1 ATAAGG
8488883 TGAATTTGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.52, C:0.06, G:0.17, T:0.26
Consensus pattern (30 bp):
ATAAGGAAACTGAATATTATCAAATGAAAA
Found at i:8489517 original size:29 final size:29
Alignment explanation
Indices: 8489484--8489542 Score: 82
Period size: 29 Copynumber: 2.0 Consensus size: 29
8489474 TCCACATTAA
* * *
8489484 CATGAATTCTCAATGAACAAGTTCTTCAC
1 CATGAACTCTCAACGAACAAGTTCTCCAC
*
8489513 CATGAACTCTCAACGAATAAGTTCTCCAC
1 CATGAACTCTCAACGAACAAGTTCTCCAC
8489542 C
1 C
8489543 TCTTCCACGA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.34, C:0.29, G:0.10, T:0.27
Consensus pattern (29 bp):
CATGAACTCTCAACGAACAAGTTCTCCAC
Found at i:8492771 original size:19 final size:20
Alignment explanation
Indices: 8492737--8492774 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
8492727 GATTGTTCTA
8492737 GTTGTTTTCCCTTTTGATTC
1 GTTGTTTTCCCTTTTGATTC
*
8492757 GTTGTTTT-TCTTTTGATT
1 GTTGTTTTCCCTTTTGATT
8492775 TTATTCTACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.05, C:0.13, G:0.16, T:0.66
Consensus pattern (20 bp):
GTTGTTTTCCCTTTTGATTC
Found at i:8495925 original size:18 final size:18
Alignment explanation
Indices: 8495873--8495925 Score: 51
Period size: 18 Copynumber: 3.1 Consensus size: 18
8495863 GTGCAGTTGA
*
8495873 ATAATTATTTGAAATACTT
1 ATAA-TATTTGAAATAATT
*
8495892 -TAA-ATAT-AAA-AATT
1 ATAATATTTGAAATAATT
8495906 ATAATATTTGAAATAATT
1 ATAATATTTGAAATAATT
8495924 AT
1 AT
8495926 TTTATAATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 9
0.69 0.08 0.23
Matches are distributed among these distances:
14 3 0.11
15 6 0.22
16 6 0.22
17 3 0.11
18 9 0.33
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (18 bp):
ATAATATTTGAAATAATT
Found at i:8500573 original size:9 final size:9
Alignment explanation
Indices: 8500549--8500582 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
8500539 TTAGTCTTAA
8500549 TTAAAATATT
1 TTAAAA-ATT
*
8500559 TTAAAAATC
1 TTAAAAATT
8500568 TTAAAAATT
1 TTAAAAATT
8500577 TTAAAA
1 TTAAAA
8500583 CTAAATATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 16 0.73
10 6 0.27
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (9 bp):
TTAAAAATT
Found at i:8500784 original size:37 final size:37
Alignment explanation
Indices: 8500743--8500815 Score: 94
Period size: 37 Copynumber: 2.0 Consensus size: 37
8500733 AAAAATATTT
*
8500743 TTATATTTCTTTTGAAAACTTTTAAAT-TTTTTATAAA
1 TTATATTTATTTTGAAAA-TTTTAAATATTTTTATAAA
* * *
8500780 TTATATTTATTTTTATAATTTTTAATATTTTTATAA
1 TTATATTTATTTTGAAAATTTTAAATATTTTTATAA
8500816 TTAGGACTAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
36 7 0.23
37 24 0.77
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (37 bp):
TTATATTTATTTTGAAAATTTTAAATATTTTTATAAA
Found at i:8500792 original size:19 final size:18
Alignment explanation
Indices: 8500770--8500815 Score: 56
Period size: 19 Copynumber: 2.5 Consensus size: 18
8500760 ACTTTTAAAT
*
8500770 TTTTTATAAATTATATTTA
1 TTTTTATAAATTATA-ATA
* *
8500789 TTTTTATAATTTTTAATA
1 TTTTTATAAATTATAATA
8500807 TTTTTATAA
1 TTTTTATAA
8500816 TTAGGACTAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 11 0.46
19 13 0.54
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTTATAAATTATAATA
Found at i:8500799 original size:18 final size:18
Alignment explanation
Indices: 8500770--8500818 Score: 57
Period size: 18 Copynumber: 2.7 Consensus size: 18
8500760 ACTTTTAAAT
8500770 TTTTTATAAATTATATT-TA
1 TTTTTAT-AATTAT-TTATA
8500789 TTTTTATAATT-TTTAATA
1 TTTTTATAATTATTT-ATA
8500807 TTTTTATAATTA
1 TTTTTATAATTA
8500819 GGACTAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
16 2 0.07
17 1 0.04
18 17 0.63
19 7 0.26
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (18 bp):
TTTTTATAATTATTTATA
Found at i:8501568 original size:31 final size:29
Alignment explanation
Indices: 8501501--8501569 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
8501491 TTAGGTTACG
* *
8501501 TTTTAGTCACTTATGTTTGAAGTGTTACG
1 TTTTAGTCACTTATGTTTGAAGTGTAACA
*
8501530 TTTTAGTCACTTATGTTATCG-TGTTGTAACA
1 TTTTAGTCACTTATGTT-T-GAAG-TGTAACA
8501561 TTTTAGTCA
1 TTTTAGTCA
8501570 TTTAGCCGTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 17 0.50
30 2 0.06
31 15 0.44
ACGTcount: A:0.22, C:0.12, G:0.17, T:0.49
Consensus pattern (29 bp):
TTTTAGTCACTTATGTTTGAAGTGTAACA
Found at i:8502828 original size:18 final size:17
Alignment explanation
Indices: 8502790--8502822 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
8502780 AATTTAACTT
8502790 TAATTAAATTACTTAAAA
1 TAATTAAATTA-TTAAAA
8502808 TAATTAAATT-TTAAA
1 TAATTAAATTATTAAA
8502823 TTATAAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.33
18 10 0.67
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (17 bp):
TAATTAAATTATTAAAA
Found at i:8503097 original size:7 final size:7
Alignment explanation
Indices: 8503087--8503153 Score: 57
Period size: 7 Copynumber: 9.6 Consensus size: 7
8503077 TTGGGTTTTG
8503087 GGTTTAA
1 GGTTTAA
8503094 GGTTTAA
1 GGTTTAA
*
8503101 -GTTTAG
1 GGTTTAA
8503107 GGTTTAA
1 GGTTTAA
*
8503114 GGATTTGA
1 GG-TTTAA
*
8503122 GGTTTAT
1 GGTTTAA
*
8503129 GGTTTGA
1 GGTTTAA
8503136 -GTTTAA
1 GGTTTAA
*
8503142 TGTTTAAA
1 GGTTT-AA
8503150 GGTT
1 GGTT
8503154 CGGGTTACAA
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
6 10 0.21
7 26 0.55
8 11 0.23
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (7 bp):
GGTTTAA
Found at i:8503127 original size:15 final size:14
Alignment explanation
Indices: 8503087--8503146 Score: 54
Period size: 13 Copynumber: 4.4 Consensus size: 14
8503077 TTGGGTTTTG
*
8503087 GGTTTAAGGTTTAA
1 GGTTTGAGGTTTAA
8503101 -GTTT-AGGGTTTAA
1 GGTTTGA-GGTTTAA
*
8503114 GGATTTGAGGTTTAT
1 GG-TTTGAGGTTTAA
8503129 GGTTTGA-GTTTAA
1 GGTTTGAGGTTTAA
*
8503142 TGTTT
1 GGTTT
8503147 AAAGGTTCGG
Statistics
Matches: 39, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
12 1 0.03
13 20 0.51
14 6 0.15
15 11 0.28
16 1 0.03
ACGTcount: A:0.22, C:0.00, G:0.30, T:0.48
Consensus pattern (14 bp):
GGTTTGAGGTTTAA
Found at i:8503147 original size:35 final size:34
Alignment explanation
Indices: 8503083--8503148 Score: 87
Period size: 35 Copynumber: 1.9 Consensus size: 34
8503073 GAGTTTGGGT
*
8503083 TTTGGGTTTAAGGTTTAAGTTTAGGGTTTAAGGA
1 TTTGGGTTTAAGGTTTAAGTTTAAGGTTTAAGGA
* * *
8503117 TTTGAGGTTTATGGTTTGAGTTTAATGTTTAA
1 TTTG-GGTTTAAGGTTTAAGTTTAAGGTTTAA
8503149 AGGTTCGGGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
34 4 0.15
35 23 0.85
ACGTcount: A:0.23, C:0.00, G:0.29, T:0.48
Consensus pattern (34 bp):
TTTGGGTTTAAGGTTTAAGTTTAAGGTTTAAGGA
Found at i:8515099 original size:13 final size:14
Alignment explanation
Indices: 8515071--8515111 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
8515061 CCGGCCTAGT
* *
8515071 AAACACCAAAAGAA
1 AAACACAAAAATAA
8515085 AAAC-CAAAAAT-A
1 AAACACAAAAATAA
8515097 AAACACAAAAATAA
1 AAACACAAAAATAA
8515111 A
1 A
8515112 TAAAAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
12 5 0.22
13 12 0.52
14 6 0.26
ACGTcount: A:0.76, C:0.17, G:0.02, T:0.05
Consensus pattern (14 bp):
AAACACAAAAATAA
Found at i:8518989 original size:17 final size:17
Alignment explanation
Indices: 8518967--8519005 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
8518957 ACCATATCAT
8518967 TTTTATCCATTAAATAA
1 TTTTATCCATTAAATAA
** *
8518984 TTTTATTTATTAATTAA
1 TTTTATCCATTAAATAA
8519001 TTTTA
1 TTTTA
8519006 GAGTAAATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.36, C:0.05, G:0.00, T:0.59
Consensus pattern (17 bp):
TTTTATCCATTAAATAA
Found at i:8519557 original size:17 final size:17
Alignment explanation
Indices: 8519524--8519556 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8519514 TTTTTAAAGA
*
8519524 ATATATTTTTAATTTTT
1 ATATATTATTAATTTTT
8519541 ATATATTATT-ATTTTT
1 ATATATTATTAATTTTT
8519557 TGTTAACCAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
ATATATTATTAATTTTT
Found at i:8524207 original size:360 final size:360
Alignment explanation
Indices: 8523546--8524269 Score: 1430
Period size: 360 Copynumber: 2.0 Consensus size: 360
8523536 TTTTGAAGAC
8523546 GAAGACTTGGCGTTAATGTTGTTGGGATCGCTTCCTGAGGAGTTTGAGTACCTTGAAACTACTCT
1 GAAGACTTGGCGTTAATGTTGTTGGGATCGCTTCCTGAGGAGTTTGAGTACCTTGAAACTACTCT
8523611 ACTTCATGGAAAATCGGAAGTAACTTTCAATGAAGTAACTGCTGCATTGTATAGCTATGAACTAC
66 ACTTCATGGAAAATCGGAAGTAACTTTCAATGAAGTAACTGCTGCATTGTATAGCTATGAACTAC
8523676 GCCGAAAGGATAAGTTGAAAGGTTCAGGTGAAGCAGCAGTGGAAGCATTGGTAACAAGAGGTCGT
131 GCCGAAAGGATAAGTTGAAAGGTTCAGGTGAAGCAGCAGTGGAAGCATTGGTAACAAGAGGTCGT
8523741 CAGCAAAGTCAGTCTAATGGGAAGAGAAGAAAGTCCAAAGGTCGAGCTGTTGCCAAAGATGAATG
196 CAGCAAAGTCAGTCTAATGGGAAGAGAAGAAAGTCCAAAGGTCGAGCTGTTGCCAAAGATGAATG
8523806 TTCCTTTTGCAAAGAAAAAAGACATTGGAAGAAAGATTGTCCAAAATTGAAGAAAAAAGGGAAGA
261 TTCCTTTTGCAAAGAAAAAAGACATTGGAAGAAAGATTGTCCAAAATTGAAGAAAAAAGGGAAGA
8523871 CTCCGCAAGATGCAAATGTTGCAGAATGCAATAGG
326 CTCCGCAAGATGCAAATGTTGCAGAATGCAATAGG
8523906 GAAGACTTGGCGTTAATGTTGTTGGGATCGCTTCCTGAGGAGTTTGAGTACCTTGAAACTACTCT
1 GAAGACTTGGCGTTAATGTTGTTGGGATCGCTTCCTGAGGAGTTTGAGTACCTTGAAACTACTCT
8523971 ACTTCATGGAAAATCGGAAGTAACTTTCAATGAAGTAACTGCTGCATTGTATAGCTATGAACTAC
66 ACTTCATGGAAAATCGGAAGTAACTTTCAATGAAGTAACTGCTGCATTGTATAGCTATGAACTAC
8524036 GCCGAAAGGATAAGTTGAAAGGTTCAGGTGAAGCAGCAGTGGAAGCATTGGTAACAAGAGGTCGT
131 GCCGAAAGGATAAGTTGAAAGGTTCAGGTGAAGCAGCAGTGGAAGCATTGGTAACAAGAGGTCGT
8524101 CAGCAAAGTCAGTCTAATGGGAAGAGAAGAAAGTCCAAAGGTCGAGCTGTTGCCAAAGATGAATG
196 CAGCAAAGTCAGTCTAATGGGAAGAGAAGAAAGTCCAAAGGTCGAGCTGTTGCCAAAGATGAATG
*
8524166 TTCCTTTTGCAAAGAAAAAGGACATTGGAAGAAAGATTGTCCAAAATTGAAGAAAAAAGGGAAGA
261 TTCCTTTTGCAAAGAAAAAAGACATTGGAAGAAAGATTGTCCAAAATTGAAGAAAAAAGGGAAGA
*
8524231 CTCCGCAAGATGCAAATGTTGCAGAATGCAATAGT
326 CTCCGCAAGATGCAAATGTTGCAGAATGCAATAGG
8524266 GAAG
1 GAAG
8524270 CAGAGTCAGA
Statistics
Matches: 362, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
360 362 1.00
ACGTcount: A:0.35, C:0.15, G:0.27, T:0.23
Consensus pattern (360 bp):
GAAGACTTGGCGTTAATGTTGTTGGGATCGCTTCCTGAGGAGTTTGAGTACCTTGAAACTACTCT
ACTTCATGGAAAATCGGAAGTAACTTTCAATGAAGTAACTGCTGCATTGTATAGCTATGAACTAC
GCCGAAAGGATAAGTTGAAAGGTTCAGGTGAAGCAGCAGTGGAAGCATTGGTAACAAGAGGTCGT
CAGCAAAGTCAGTCTAATGGGAAGAGAAGAAAGTCCAAAGGTCGAGCTGTTGCCAAAGATGAATG
TTCCTTTTGCAAAGAAAAAAGACATTGGAAGAAAGATTGTCCAAAATTGAAGAAAAAAGGGAAGA
CTCCGCAAGATGCAAATGTTGCAGAATGCAATAGG
Found at i:8525634 original size:21 final size:22
Alignment explanation
Indices: 8525605--8525651 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
8525595 CAGAAGGAGT
*
8525605 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
8525627 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
8525648 GAGT
1 GAGT
8525652 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:8533301 original size:34 final size:33
Alignment explanation
Indices: 8533230--8533307 Score: 106
Period size: 34 Copynumber: 2.4 Consensus size: 33
8533220 CAATAATAGT
*
8533230 TCAGT-TCAGTTGGGCCTTAGCCCATTATAGTA
1 TCAGTATCAGTTGGGCCTTAGCCCATTACAGTA
8533262 TCAGTATCAGTGTGGGCCTTAGCCCATTACAGTGA
1 TCAGTATCAGT-TGGGCCTTAGCCCATTACAGT-A
*
8533297 -CAGTAACAGTT
1 TCAGTATCAGTT
8533308 CAGACATGCA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
32 5 0.12
33 6 0.15
34 29 0.71
35 1 0.02
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (33 bp):
TCAGTATCAGTTGGGCCTTAGCCCATTACAGTA
Found at i:8541338 original size:2 final size:2
Alignment explanation
Indices: 8541331--8541358 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
8541321 ACTTCACATG
8541331 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
8541359 GGAAATGTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8552763 original size:25 final size:25
Alignment explanation
Indices: 8552693--8552768 Score: 77
Period size: 25 Copynumber: 3.1 Consensus size: 25
8552683 TTTAAATTAT
* *
8552693 AAAAAAT-TATAAAAACTATTGTTA
1 AAAAAATATATAAAAAATATTCTTA
* *
8552717 AAAATAA-AAATCAATAAA-ATTCTTA
1 AAAA-AATATAT-AAAAAATATTCTTA
8552742 AAAAAATATATAAAAAATATTCTTA
1 AAAAAATATATAAAAAATATTCTTA
8552767 AA
1 AA
8552769 TATTTTTAAA
Statistics
Matches: 41, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
24 11 0.27
25 26 0.63
26 4 0.10
ACGTcount: A:0.63, C:0.05, G:0.01, T:0.30
Consensus pattern (25 bp):
AAAAAATATATAAAAAATATTCTTA
Found at i:8553305 original size:3 final size:3
Alignment explanation
Indices: 8553297--8553333 Score: 65
Period size: 3 Copynumber: 12.3 Consensus size: 3
8553287 TAATTAAGGT
*
8553297 TTA TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
8553334 GTGCATTCGG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:8561598 original size:14 final size:14
Alignment explanation
Indices: 8561574--8561607 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
8561564 GAAAGGAGAG
*
8561574 AAAGGAGAAGAAAA
1 AAAGAAGAAGAAAA
*
8561588 GAAGAAGAAGAAAA
1 AAAGAAGAAGAAAA
8561602 AAAGAA
1 AAAGAA
8561608 AAAATGTAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.74, C:0.00, G:0.26, T:0.00
Consensus pattern (14 bp):
AAAGAAGAAGAAAA
Found at i:8561933 original size:22 final size:21
Alignment explanation
Indices: 8561908--8562001 Score: 84
Period size: 22 Copynumber: 4.3 Consensus size: 21
8561898 TTTATTATGA
8561908 AATTTTTGCCATTTTATTTATC
1 AATTTTTG-CATTTTATTTATC
*
8561930 AATTTTATGGATTTTTATTTATGC
1 AATTTT-TGCA-TTTTATTTAT-C
*
8561954 -ATTTATT-AATTTTATTTATC
1 AATTT-TTGCATTTTATTTATC
* *
8561974 AATTTTTTCCATTTTATTTATT
1 AA-TTTTTGCATTTTATTTATC
8561996 AATTTT
1 AATTTT
8562002 AGGAATTTTT
Statistics
Matches: 61, Mismatches: 4, Indels: 15
0.76 0.05 0.19
Matches are distributed among these distances:
20 1 0.02
21 17 0.28
22 24 0.39
23 17 0.28
24 2 0.03
ACGTcount: A:0.26, C:0.07, G:0.04, T:0.63
Consensus pattern (21 bp):
AATTTTTGCATTTTATTTATC
Found at i:8562009 original size:44 final size:44
Alignment explanation
Indices: 8561918--8562010 Score: 107
Period size: 44 Copynumber: 2.1 Consensus size: 44
8561908 AATTTTTGCC
** * **
8561918 ATTTTATTTATCAATTTTATGGATTTTTATTTATGCATTTATTA
1 ATTTTATTTATCAATTTTATCCATTTTTATTTATGAATTTAGGA
* *
8561962 ATTTTATTTATCAATTTTTTCCA-TTTTATTTATTAATTTTAGGA
1 ATTTTATTTATCAATTTTATCCATTTTTATTTATGAA-TTTAGGA
8562006 ATTTT
1 ATTTT
8562011 TTGCAATTTA
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
43 11 0.27
44 30 0.73
ACGTcount: A:0.27, C:0.05, G:0.05, T:0.62
Consensus pattern (44 bp):
ATTTTATTTATCAATTTTATCCATTTTTATTTATGAATTTAGGA
Found at i:8566344 original size:21 final size:20
Alignment explanation
Indices: 8566316--8566354 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
8566306 TTAAGAATAA
*
8566316 TAAAAAATAAAGTTTTTAAT
1 TAAAAAATAAACTTTTTAAT
*
8566336 TAAATAAATATACTTTTTA
1 TAAA-AAATAAACTTTTTA
8566355 TATACAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (20 bp):
TAAAAAATAAACTTTTTAAT
Found at i:8567073 original size:20 final size:21
Alignment explanation
Indices: 8567048--8567086 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
8567038 TATGGTTTTC
8567048 ATTATTATT-TGAGATATTTA
1 ATTATTATTATGAGATATTTA
*
8567068 ATTATTATTATTAGATATT
1 ATTATTATTATGAGATATT
8567087 AGATAGTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (21 bp):
ATTATTATTATGAGATATTTA
Found at i:8570993 original size:3 final size:3
Alignment explanation
Indices: 8570987--8571013 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
8570977 TTATTAATAC
8570987 CAT CAT CAT CAT CAT CAT CAT CAT CAT
1 CAT CAT CAT CAT CAT CAT CAT CAT CAT
8571014 GATTATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33
Consensus pattern (3 bp):
CAT
Found at i:8571021 original size:3 final size:3
Alignment explanation
Indices: 8571015--8571057 Score: 68
Period size: 3 Copynumber: 14.3 Consensus size: 3
8571005 CATCATCATG
**
8571015 ATT ATT ATT ATT ATT ATT ATT ACC ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
8571058 AATTTTTTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:8575387 original size:17 final size:18
Alignment explanation
Indices: 8575353--8575398 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
8575343 CCGTTATGTC
8575353 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
8575368 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
8575385 CGCGACCGCGACCG
1 CGCGACCGCGACCG
8575399 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Found at i:8590351 original size:30 final size:32
Alignment explanation
Indices: 8590306--8590367 Score: 110
Period size: 31 Copynumber: 2.0 Consensus size: 32
8590296 GCTTAATATG
8590306 ACTTGACACTTTTTT-CTAATTTGGTACCTAA
1 ACTTGACACTTTTTTCCTAATTTGGTACCTAA
8590337 ACTTGACA-TTTTTTCCTAATTTGGTACCTAA
1 ACTTGACACTTTTTTCCTAATTTGGTACCTAA
8590368 TCTTTTTGGG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
30 6 0.20
31 24 0.80
ACGTcount: A:0.26, C:0.19, G:0.10, T:0.45
Consensus pattern (32 bp):
ACTTGACACTTTTTTCCTAATTTGGTACCTAA
Found at i:8590589 original size:24 final size:23
Alignment explanation
Indices: 8590562--8590607 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
8590552 TTTTTTTGTA
8590562 TTTTATATATTCAATTACTTTTAG
1 TTTTATATATTCAATTA-TTTTAG
* *
8590586 TTTTATTTATTTAATTATTTTA
1 TTTTATATATTCAATTATTTTA
8590608 TTAGTTGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 5 0.25
24 15 0.75
ACGTcount: A:0.28, C:0.04, G:0.02, T:0.65
Consensus pattern (23 bp):
TTTTATATATTCAATTATTTTAG
Found at i:8590834 original size:30 final size:30
Alignment explanation
Indices: 8590793--8590875 Score: 103
Period size: 30 Copynumber: 2.8 Consensus size: 30
8590783 TATAACATTT
8590793 AAAAAATTTAGGTACCAAATTAAACCTAAA
1 AAAAAATTTAGGTACCAAATTAAACCTAAA
* *** *
8590823 AAAAAACTTAGGTACCAAATTGGGCCTTAA
1 AAAAAATTTAGGTACCAAATTAAACCTAAA
* *
8590853 AAAAAGTTTAAGTACCAAATTAA
1 AAAAAATTTAGGTACCAAATTAA
8590876 GAAAAAGTGT
Statistics
Matches: 43, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.52, C:0.13, G:0.11, T:0.24
Consensus pattern (30 bp):
AAAAAATTTAGGTACCAAATTAAACCTAAA
Found at i:8599571 original size:18 final size:17
Alignment explanation
Indices: 8599550--8599613 Score: 51
Period size: 18 Copynumber: 3.6 Consensus size: 17
8599540 TTATTTTCGC
8599550 TATTATTATTA-TATCTG
1 TATTATTATTACTAT-TG
** *
8599567 ATATTGCTATTATTATTG
1 -TATTATTATTACTATTG
8599585 TATTATTATTACT-TATG
1 TATTATTATTACTAT-TG
8599602 TTATTATTATTA
1 -TATTATTATTA
8599614 TTACTATTAT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
16 1 0.03
17 12 0.32
18 22 0.58
19 3 0.08
ACGTcount: A:0.30, C:0.05, G:0.06, T:0.59
Consensus pattern (17 bp):
TATTATTATTACTATTG
Found at i:8599580 original size:3 final size:3
Alignment explanation
Indices: 8599574--8599624 Score: 52
Period size: 3 Copynumber: 17.3 Consensus size: 3
8599564 CTGATATTGC
* * *
8599574 TAT TAT TAT T-G TAT TAT TAT TACT TA- TGT TAT TAT TAT TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
8599618 TAT TAT T
1 TAT TAT T
8599625 TGCTCATTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
2 2 0.05
3 34 0.87
4 3 0.08
ACGTcount: A:0.29, C:0.04, G:0.04, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:8599600 original size:21 final size:20
Alignment explanation
Indices: 8599576--8599625 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
8599566 GATATTGCTA
8599576 TTATTATTGTATTATTATTAC
1 TTATTATT-TATTATTATTAC
8599597 TTATGT-TATTATTATTATTAC
1 TTAT-TAT-TTATTATTATTAC
8599618 -TATTATTT
1 TTATTATTT
8599626 GCTCATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
19 3 0.12
20 4 0.15
21 17 0.65
22 2 0.08
ACGTcount: A:0.28, C:0.04, G:0.04, T:0.64
Consensus pattern (20 bp):
TTATTATTTATTATTATTAC
Found at i:8600694 original size:107 final size:107
Alignment explanation
Indices: 8600492--8600776 Score: 396
Period size: 107 Copynumber: 2.7 Consensus size: 107
8600482 TTAGTGTTTA
* * *
8600492 GAAATTCGAGAAAACTTGCCCTAATGTGCTGGGTTTTGATTTTTCTTGTTCAACCAAATAGCTAA
1 GAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTTGA--TTTCTCGTTTAACCAAATAGCTAA
* * *
8600557 GTATCCTTTTAAAAATTTCAAAATAGGGCAATGTTTTGCATTTG
64 ATATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCATTCG
8600601 GAAA-TCTGAGAAAACGTGCCCTAATGTGCTGGGTTTTGATTTCTCGTTTAACCAAATAGCTAAA
1 GAAATTC-GAGAAAACGTGCCCTAATGTGCTGGGTTTTGATTTCTCGTTTAACCAAATAGCTAAA
*
8600665 TATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCGTTCG
65 TATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCATTCG
* * * * *
8600708 GAAATTCGATG--AGCGCGCCCTAATGTGCTGGGTTTCGATTTCTCGTTTAACCAAACAGCCAAA
1 GAAATTCGA-GAAAACGTGCCCTAATGTGCTGGGTTTTGATTTCTCGTTTAACCAAATAGCTAAA
*
8600771 CATCCT
65 TATCCT
8600777 CTTGAATTTT
Statistics
Matches: 160, Mismatches: 13, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
106 52 0.32
107 68 0.43
108 5 0.03
109 35 0.22
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (107 bp):
GAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTTGATTTCTCGTTTAACCAAATAGCTAAAT
ATCCTTTTAAAAATTTCAAAATAAGGCAATGTTTTGCATTCG
Found at i:8602712 original size:104 final size:103
Alignment explanation
Indices: 8602545--8602910 Score: 623
Period size: 104 Copynumber: 3.6 Consensus size: 103
8602535 TTGTATATAA
** *
8602545 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATGGTGGTGCTATGTGCG-TGATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGAT-ATCCACCATATCTT
8602609 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
8602648 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCGATATCCACCATATCTT
8602713 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
65 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
8602752 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCA-TGGTGGTGCTAAGTGCGATATCCACCATATCTT
8602817 TGAAA--TGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
8602853 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGATATCCACCA
8602911 ATAACGGTTA
Statistics
Matches: 254, Mismatches: 7, Indels: 7
0.95 0.03 0.03
Matches are distributed among these distances:
100 25 0.10
101 35 0.14
102 26 0.10
103 29 0.11
104 138 0.54
105 1 0.00
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.30
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATGGTGGTGCTAAGTGCGATATCCACCATATCTTT
GAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:8602863 original size:26 final size:26
Alignment explanation
Indices: 8602828--8602879 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
8602818 GAAATGAAAG
*
8602828 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
8602854 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
8602880 TTCAGGGTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:8610231 original size:26 final size:26
Alignment explanation
Indices: 8610195--8610246 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
8610185 GAAATGTGAA
*
8610195 AGGGGTTGCTATGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCG
8610221 AGGGGTTGCTAAGTGCTGATTCCCCG
1 AGGGGTTGCTAAGTGCTGATTCCCCG
8610247 GTTCATTGGT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
AGGGGTTGCTAAGTGCTGATTCCCCG
Found at i:8610365 original size:104 final size:104
Alignment explanation
Indices: 8610120--8610485 Score: 609
Period size: 102 Copynumber: 3.6 Consensus size: 104
8610110 TTGTATATAA
** * *
8610120 AGGGGTTGCTGTGTGCTGATTCCCCGATTTA-TGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
8610183 TTGAAATGTGAAA-GGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
8610221 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
8610286 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
8610325 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
8610390 TGAAA--TGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
8610427 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
8610486 ATAACGGTTA
Statistics
Matches: 253, Mismatches: 8, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
101 27 0.11
102 130 0.51
103 21 0.08
104 75 0.30
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:8617604 original size:26 final size:26
Alignment explanation
Indices: 8617569--8617619 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
8617559 AATGTGAAAG
*
8617569 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
8617595 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
8617620 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:8617670 original size:103 final size:103
Alignment explanation
Indices: 8617492--8617852 Score: 578
Period size: 100 Copynumber: 3.6 Consensus size: 103
8617482 TTGTATATAA
** * *
8617492 AGGGGTTGCTGTGTGCTGATTCCCCGATTTA-TGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
8617555 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
*
8617594 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
8617659 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
8617698 AGGGGTTGCTAAGTGCTGATT--CC--TTCATTGGTGGTGCTAAGTGCGATATCCACCATATC-T
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
8617758 TGAAA--TGAAAGGGGGTTGCTATGTGCTGATTCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
* *
8617794 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
8617853 ATAACGGTTA
Statistics
Matches: 245, Mismatches: 7, Indels: 16
0.91 0.03 0.06
Matches are distributed among these distances:
96 26 0.11
97 26 0.11
98 2 0.01
99 6 0.02
100 66 0.27
102 29 0.12
103 63 0.26
104 27 0.11
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (103 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCG
Found at i:8617804 original size:26 final size:26
Alignment explanation
Indices: 8617769--8617820 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
8617759 GAAATGAAAG
*
8617769 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
8617795 GGGGTTGCTAAGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
8617821 TTCAGTGGTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.13, C:0.23, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:8625169 original size:26 final size:26
Alignment explanation
Indices: 8625134--8625184 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
8625124 AATGTGAAAG
*
8625134 GGGGTTGCTATGTGCTGATTCCCCGA
1 GGGGTTGCTAAGTGCTGATTCCCCGA
8625160 GGGGTTGCTAAGTGCTGATTCCCCG
1 GGGGTTGCTAAGTGCTGATTCCCCG
8625185 GTTCATTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.12, C:0.24, G:0.35, T:0.29
Consensus pattern (26 bp):
GGGGTTGCTAAGTGCTGATTCCCCGA
Found at i:8625235 original size:103 final size:104
Alignment explanation
Indices: 8625056--8625422 Score: 636
Period size: 103 Copynumber: 3.6 Consensus size: 104
8625046 TTGTATATAA
** *
8625056 AGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCG-TGATCCACCATATCT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGAT-ATCCACCATATCT
8625120 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATT-CCCCG
65 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
*
8625159 AGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
8625224 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
8625263 AGGGGTTGCTAAGTGCTGATTCCCCG-TTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
8625327 TGAAA--TGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
66 TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
* *
8625364 AGGGGTTGCTAAGTGCTGATTCCCCGATTCAGTGGTGGTGCTAAGTGCGAGATCCACCA
1 AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCA
8625423 ATAACGGTTA
Statistics
Matches: 255, Mismatches: 6, Indels: 7
0.95 0.02 0.03
Matches are distributed among these distances:
101 58 0.23
102 30 0.12
103 135 0.53
104 32 0.13
ACGTcount: A:0.19, C:0.20, G:0.30, T:0.31
Consensus pattern (104 bp):
AGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCATATCTT
TGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCCG
Found at i:8630930 original size:6 final size:6
Alignment explanation
Indices: 8630915--8630945 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
8630905 TTGGGTTTTA
8630915 TTTA-T TTTATT TTTATT TTTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TT
8630946 GTTTGGGTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.16
6 21 0.84
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:8631540 original size:44 final size:44
Alignment explanation
Indices: 8631482--8631725 Score: 260
Period size: 44 Copynumber: 5.5 Consensus size: 44
8631472 TTCGTCTTGT
* * * * *
8631482 TCCACTGCAGCTTCAGGGAGATAAAATTTGTTGCTTCAATCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTCGTAGCTTCAATCTGC
* ** *
8631526 TCCACTATAACTTCAAAGAGATAAGATTTGTAGCTTCAATCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTCGTAGCTTCAATCTGC
* * *
8631570 TCTACTACAACTTCAGGGAGATAAGATTCGTAACTCCAATCTGC
1 TCCACTACAACTTCAGGGAGATAAGATTCGTAGCTTCAATCTGC
* * *
8631614 TCCACTGCAAC-TCTAGGGAGATAAGATTCATAGCTCCAATCTGC
1 TCCACTACAACTTC-AGGGAGATAAGATTCGTAGCTTCAATCTGC
* * * *
8631658 TCTA-T-CGTAACTTCAGAGAGATGAGATTCGTAGCTTCAATTTGC
1 TCCACTAC--AACTTCAGGGAGATAAGATTCGTAGCTTCAATCTGC
*
8631702 TCCACTACAACTTCTGGGAGATAA
1 TCCACTACAACTTCAGGGAGATAA
8631726 TGTTTGCTAT
Statistics
Matches: 166, Mismatches: 28, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 158 0.95
45 3 0.02
46 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.30
Consensus pattern (44 bp):
TCCACTACAACTTCAGGGAGATAAGATTCGTAGCTTCAATCTGC
Found at i:8637238 original size:30 final size:31
Alignment explanation
Indices: 8637181--8637242 Score: 99
Period size: 32 Copynumber: 2.0 Consensus size: 31
8637171 TACAAATTGA
*
8637181 TCACTAAATTATTCAAATTTTTTTTATTTAAG
1 TCACTAAATTATTCAAA-TTGTTTTATTTAAG
8637213 TCACTAAATTATTCAAA-TGTTTTATTTAAG
1 TCACTAAATTATTCAAATTGTTTTATTTAAG
8637243 CCATTGGGCT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 12 0.41
32 17 0.59
ACGTcount: A:0.35, C:0.10, G:0.05, T:0.50
Consensus pattern (31 bp):
TCACTAAATTATTCAAATTGTTTTATTTAAG
Found at i:8645309 original size:18 final size:18
Alignment explanation
Indices: 8645288--8645325 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
8645278 TAGTTTACCC
8645288 TATAAT-TTATGGTTATTT
1 TATAATATTATGGTT-TTT
*
8645306 TATAATATTCTGGTTTTT
1 TATAATATTATGGTTTTT
8645324 TA
1 TA
8645326 GAAAACAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.26, C:0.03, G:0.11, T:0.61
Consensus pattern (18 bp):
TATAATATTATGGTTTTT
Found at i:8646991 original size:22 final size:24
Alignment explanation
Indices: 8646931--8647015 Score: 75
Period size: 26 Copynumber: 3.5 Consensus size: 24
8646921 CTTTTATATG
*
8646931 ATTATTTTAACTTGCTTTGTAAATT
1 ATTATTTTAAGTTGCTTTGT-AATT
*
8646956 ATCTATGTTAAGTTGCTTTGT-A-T
1 AT-TATTTTAAGTTGCTTTGTAATT
** *
8646979 ATTATTTTAAGTTATTTTATATATT
1 ATTATTTTAAGTTGCTTTGTA-ATT
8647004 AATTATTTTAAG
1 -ATTATTTTAAG
8647016 ATTATCCTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
22 14 0.29
23 3 0.06
24 2 0.04
25 3 0.06
26 27 0.55
ACGTcount: A:0.29, C:0.05, G:0.09, T:0.56
Consensus pattern (24 bp):
ATTATTTTAAGTTGCTTTGTAATT
Found at i:8654681 original size:44 final size:44
Alignment explanation
Indices: 8654633--8654746 Score: 156
Period size: 44 Copynumber: 2.6 Consensus size: 44
8654623 ACCAGTATGG
* * *
8654633 GAAGACAAGATCTGCTCTCTTTGATCTACTGCATGCCAATACAT
1 GAAGACAAGATCTGCTCTCTTCGATCTACTCCACGCCAATACAT
*
8654677 GAAGACAAGATCTGCTTTCTTCGATCTACTCCACGCCAATACAT
1 GAAGACAAGATCTGCTCTCTTCGATCTACTCCACGCCAATACAT
* * * *
8654721 GAAGGCAATATCTTCTTTCTTCGATC
1 GAAGACAAGATCTGCTCTCTTCGATC
8654747 GATTCCACTA
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
44 63 1.00
ACGTcount: A:0.28, C:0.26, G:0.15, T:0.31
Consensus pattern (44 bp):
GAAGACAAGATCTGCTCTCTTCGATCTACTCCACGCCAATACAT
Found at i:8654901 original size:44 final size:44
Alignment explanation
Indices: 8654832--8655555 Score: 268
Period size: 44 Copynumber: 16.6 Consensus size: 44
8654822 ACCATCTTTG
* * **
8654832 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * *
8654876 ATCTATTCCACTGTTGCCCAAGGAGAT--G----G-AA--TTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * * * * ** *
8654911 ATGTACTCCACTG-TAACCTCATGGAGGTAAAAT-TCGCCATCTTCG
1 ATCTACTCCACTGCT-GCC-CAGGGAGATAAGATCT-GTAATCTTCA
* * **
8654956 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * *
8655000 ATCTATTCCACTGCTGCCCAGGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * ** **
8655043 ATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCCGCCATCTTTG
1 ATCTACTCCACTGCT-GCC-CAGGGAGATAAGATCTGTAATCTTCA
* * * **
8655088 ATCTGCTCCTCTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * * *
8655132 ATCTATTCCACTGCTGCCCAAGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAAT--CTTCA
* * * * * ** **
8655175 ATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCCGCCATCTTTG
1 ATCTACTCCACTGCT-GCC-CAGGGAGATAAGATCTGTAATCTTCA
* * * **
8655220 ATCTGCTCCTCTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * * *
8655264 ATCTATTCCACTGCTGCTCAGGGAGAT-AGA-AT-TACTGGCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAAT--CTTCA
* * * * *
8655307 ATGTACTCCACTG-TAACCTCAGGGAGGTAAAATCCGCT-ATCCTTC-
1 ATCTACTCCACTGCT-GCC-CAGGGAGATAAGATCTG-TAAT-CTTCA
* * **
8655352 ATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* * * *
8655396 ATCTATTCCACTGCTGCCCAAGGAGAT-AGA-AT-TATTGGCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAAT--CTTCA
* * * ** *
8655439 ATGTACTCCACTG-TAACCTCAGGGAGGTAA-AGTCTGCCATCCTT-G
1 ATCTACTCCACTGCT-GCC-CAGGGAGATAAGA-TCTGTAAT-CTTCA
* * * **
8655484 ATCTACTCCATTACTACTTAGGGAGATAAGATCTGTAATCTTCA
1 ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
* *
8655528 ATCTATTCCACTGCTACCCAGGGAGATA
1 ATCTACTCCACTGCTGCCCAGGGAGATA
8655556 GAATTACTAG
Statistics
Matches: 474, Mismatches: 155, Indels: 102
0.65 0.21 0.14
Matches are distributed among these distances:
34 1 0.00
35 17 0.04
36 7 0.01
37 2 0.00
38 1 0.00
41 12 0.03
42 10 0.02
43 92 0.19
44 242 0.51
45 72 0.15
46 13 0.03
47 4 0.01
48 1 0.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (44 bp):
ATCTACTCCACTGCTGCCCAGGGAGATAAGATCTGTAATCTTCA
Found at i:8655117 original size:132 final size:132
Alignment explanation
Indices: 8654762--8655743 Score: 1566
Period size: 132 Copynumber: 7.5 Consensus size: 132
8654752 CACTACCGAT
* * * *
8654762 CAGGGAGTTAGAATTACTAGCTTCAATATACTCCACTGTAACCTCAGGGAGGTAAAATCCACCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
*
8654827 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGTTG
66 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
8654892 CC
131 CC
* * * *
8654894 CAAGGAGAT-GGA--A-----TTCAATGTACTCCACTGTAACCTCATGGAGGTAAAATTCGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
*
8654951 CTTCGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
66 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
8655016 CC
131 CC
8655018 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
*
8655083 CTTTGATCTGCTCCTCTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
66 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
8655148 CC
131 CC
*
8655150 CAAGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
*
8655215 CTTTGATCTGCTCCTCTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
66 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
*
8655280 CT
131 CC
*
8655282 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCTAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
* *
8655347 CCTTCATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
66 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
8655412 CC
131 CC
* * * *
8655414 CAAGGAGATAGAATTATTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAGTCTGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
* * * * *
8655479 CCTTGATCTACTCCATTACTACTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTA
66 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
8655544 CC
131 CC
* * *
8655546 CAGGGAGATAGAATTACTAGCTTCAATGTACTCCACTGTAACCTCAAGGAGGTAAAATCCACCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
* * * * * * *
8655611 ATTTGATCTGCTCCACTACTTCTTAGGGAGATAAGATCTGTAATATTTAATTTATTCTACTACTG
66 CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
8655676 CC
131 CC
* *
8655678 TAGGGAGATAGAATTACTGGCTTTAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
1 CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
8655743 C
66 C
8655744 AACCTGCTTC
Statistics
Matches: 785, Mismatches: 57, Indels: 16
0.91 0.07 0.02
Matches are distributed among these distances:
124 113 0.14
125 2 0.00
127 1 0.00
129 1 0.00
131 2 0.00
132 666 0.85
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (132 bp):
CAGGGAGATAGAATTACTGGCTTCAATGTACTCCACTGTAACCTCAGGGAGGTAAAATCCGCCAT
CTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTGTAATCTTCAATCTATTCCACTGCTG
CC
Found at i:8655902 original size:87 final size:88
Alignment explanation
Indices: 8655754--8655914 Score: 227
Period size: 87 Copynumber: 1.8 Consensus size: 88
8655744 AACCTGCTTC
* *
8655754 ACTGCAATCGAGGGAGGTAAGGCTGGTATCTTCAATCTGCTTCGCTGTCAATGTAGGAAGGCAAG
1 ACTGCAATCGAGGGAGGTAAGGCTGGTATCTTCAATCTGATTCGCTGTCAATGCAGGAAGGCAAG
*
8655819 ATTTGCTATCTTTAACTTGCTCT
66 ATCTGCTATCTTTAACTTGCTCT
* * * **
8655842 ACTGCAA-CTGAGGGAGGTAAGGCT-TTATTTTCGATCTGATTCGCTGTCGGTGCAGGAAGGCAA
1 ACTGCAATC-GAGGGAGGTAAGGCTGGTATCTTCAATCTGATTCGCTGTCAATGCAGGAAGGCAA
8655905 GATCTGCTAT
65 GATCTGCTAT
8655915 TTTCACTGAT
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
87 42 0.66
88 22 0.34
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (88 bp):
ACTGCAATCGAGGGAGGTAAGGCTGGTATCTTCAATCTGATTCGCTGTCAATGCAGGAAGGCAAG
ATCTGCTATCTTTAACTTGCTCT
Found at i:8660087 original size:19 final size:20
Alignment explanation
Indices: 8660063--8660102 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
8660053 AACTGTGTTT
* *
8660063 AATGCATATG-ATGTAATGA
1 AATGCAAATGCATGAAATGA
8660082 AATGCAAATGCATGAAATGA
1 AATGCAAATGCATGAAATGA
8660102 A
1 A
8660103 TGCGAAAAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.25
Consensus pattern (20 bp):
AATGCAAATGCATGAAATGA
Found at i:8660154 original size:13 final size:13
Alignment explanation
Indices: 8660136--8660161 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8660126 TTTCAATTTT
8660136 TTTACTAGAAAAC
1 TTTACTAGAAAAC
8660149 TTTACTAGAAAAC
1 TTTACTAGAAAAC
8660162 AGATCTCTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (13 bp):
TTTACTAGAAAAC
Found at i:8662300 original size:31 final size:33
Alignment explanation
Indices: 8662264--8662332 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
8662254 ATATAACATT
*
8662264 ATAATAAAAAT-AC-TAAAGGAAAAAAAAACTA
1 ATAATAAAAATAACATAAAAGAAAAAAAAACTA
* *
8662295 ATAATATAAATAACATAAAAGAAAAAAAATCTA
1 ATAATAAAAATAACATAAAAGAAAAAAAAACTA
8662328 A-AATA
1 ATAATA
8662333 CAAGATTAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
31 10 0.30
32 6 0.18
33 17 0.52
ACGTcount: A:0.71, C:0.06, G:0.04, T:0.19
Consensus pattern (33 bp):
ATAATAAAAATAACATAAAAGAAAAAAAAACTA
Found at i:8663911 original size:9 final size:9
Alignment explanation
Indices: 8663894--8663932 Score: 53
Period size: 9 Copynumber: 4.3 Consensus size: 9
8663884 TTTCAAAACG
*
8663894 AAAGGAAAA
1 AAAGAAAAA
8663903 AAAGAAAAA
1 AAAGAAAAA
8663912 AAAGAAAAA
1 AAAGAAAAA
8663921 AAA-ACAAAA
1 AAAGA-AAAA
8663930 AAA
1 AAA
8663933 ACAGAGAGCT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
8 1 0.04
9 27 0.96
ACGTcount: A:0.87, C:0.03, G:0.10, T:0.00
Consensus pattern (9 bp):
AAAGAAAAA
Found at i:8663914 original size:10 final size:10
Alignment explanation
Indices: 8663899--8663933 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
8663889 AAACGAAAGG
8663899 AAAAAAAG-A
1 AAAAAAAGAA
8663908 AAAAAAAGAA
1 AAAAAAAGAA
*
8663918 AAAAAAACAA
1 AAAAAAAGAA
8663928 AAAAAA
1 AAAAAA
8663934 CAGAGAGCTC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.91, C:0.03, G:0.06, T:0.00
Consensus pattern (10 bp):
AAAAAAAGAA
Found at i:8663920 original size:18 final size:18
Alignment explanation
Indices: 8663898--8663932 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
8663888 AAAACGAAAG
*
8663898 GAAAAAAAGA-AAAAAAA
1 GAAAAAAAAACAAAAAAA
8663915 GAAAAAAAAACAAAAAAA
1 GAAAAAAAAACAAAAAAA
8663933 ACAGAGAGCT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.89, C:0.03, G:0.09, T:0.00
Consensus pattern (18 bp):
GAAAAAAAAACAAAAAAA
Found at i:8670611 original size:3 final size:3
Alignment explanation
Indices: 8670603--8670652 Score: 100
Period size: 3 Copynumber: 16.7 Consensus size: 3
8670593 GGTTGAGAGT
8670603 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
8670651 AA
1 AA
8670653 ATGAATACTC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:8673936 original size:12 final size:12
Alignment explanation
Indices: 8673919--8673954 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
8673909 TATATATTTT
*
8673919 TAAAAATTTATA
1 TAAAAATTAATA
*
8673931 TAAAAAATAATA
1 TAAAAATTAATA
8673943 TAAAAATTAATA
1 TAAAAATTAATA
8673955 CGGGTGGGCC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (12 bp):
TAAAAATTAATA
Found at i:8681554 original size:5 final size:5
Alignment explanation
Indices: 8681546--8681628 Score: 103
Period size: 5 Copynumber: 16.6 Consensus size: 5
8681536 TATTTTATTT
* *
8681546 CATTC CATTC CATTC CATTC CATAC CATTT CATTC CATTC CATTC CATTC
1 CATTC CATTC CATTC CATTC CATTC CATTC CATTC CATTC CATTC CATTC
* * ** *
8681596 CATAC CATTT CATTC CATAG CATTT CATTC CAT
1 CATTC CATTC CATTC CATTC CATTC CATTC CAT
8681629 GAAGCATTCA
Statistics
Matches: 65, Mismatches: 13, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
5 65 1.00
ACGTcount: A:0.24, C:0.35, G:0.01, T:0.40
Consensus pattern (5 bp):
CATTC
Found at i:8681564 original size:15 final size:15
Alignment explanation
Indices: 8681542--8681628 Score: 129
Period size: 15 Copynumber: 5.8 Consensus size: 15
8681532 ATTTTATTTT
*
8681542 ATTTCATTCCATTCC
1 ATTTCATTCCATACC
*
8681557 ATTCCATTCCATACC
1 ATTTCATTCCATACC
*
8681572 ATTTCATTCCATTCC
1 ATTTCATTCCATACC
*
8681587 ATTCCATTCCATACC
1 ATTTCATTCCATACC
*
8681602 ATTTCATTCCATAGC
1 ATTTCATTCCATACC
8681617 ATTTCATTCCAT
1 ATTTCATTCCAT
8681629 GAAGCATTCA
Statistics
Matches: 64, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 64 1.00
ACGTcount: A:0.24, C:0.33, G:0.01, T:0.41
Consensus pattern (15 bp):
ATTTCATTCCATACC
Found at i:8681578 original size:30 final size:30
Alignment explanation
Indices: 8681542--8681628 Score: 147
Period size: 30 Copynumber: 2.9 Consensus size: 30
8681532 ATTTTATTTT
8681542 ATTTCATTCCATTCCATTCCATTCCATACC
1 ATTTCATTCCATTCCATTCCATTCCATACC
8681572 ATTTCATTCCATTCCATTCCATTCCATACC
1 ATTTCATTCCATTCCATTCCATTCCATACC
** *
8681602 ATTTCATTCCATAGCATTTCATTCCAT
1 ATTTCATTCCATTCCATTCCATTCCAT
8681629 GAAGCATTCA
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 54 1.00
ACGTcount: A:0.24, C:0.33, G:0.01, T:0.41
Consensus pattern (30 bp):
ATTTCATTCCATTCCATTCCATTCCATACC
Found at i:8684849 original size:26 final size:27
Alignment explanation
Indices: 8684813--8684864 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
8684803 TCGAAAGAGG
8684813 AAAAGAAAAACT-AAAAAAAAAGTAAA
1 AAAAGAAAAACTCAAAAAAAAAGTAAA
* * *
8684839 AAAATAAAAACTCAAGAACAAAGTAA
1 AAAAGAAAAACTCAAAAAAAAAGTAA
8684865 TAGGAACGGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.75, C:0.08, G:0.08, T:0.10
Consensus pattern (27 bp):
AAAAGAAAAACTCAAAAAAAAAGTAAA
Found at i:8685392 original size:16 final size:15
Alignment explanation
Indices: 8685366--8685395 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
8685356 ATCTATTATT
8685366 TTTATTATATATATG
1 TTTATTATATATATG
8685381 TTTATGTATATATAT
1 TTTAT-TATATATAT
8685396 AAAGACATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (15 bp):
TTTATTATATATATG
Found at i:8694322 original size:50 final size:47
Alignment explanation
Indices: 8694263--8694439 Score: 212
Period size: 47 Copynumber: 3.7 Consensus size: 47
8694253 CAGTGAGTGT
8694263 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGACATAGGAGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GACAT--GAGA
* * *
8694313 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCTCGAGATGAGG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGACATGAGA
* * * *
8694360 GCCAGAGTAAGGCCATGTCTGGGACATGGCATCGGCATCGATATGTGA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA-CGACATGAGA
* * *
8694408 TCCCA-TGTAAGACCATATCTGGGATATGGCAT
1 -GCCAGTGTAAGACCATGTCTGGGACATGGCAT
8694440 TGGCGTCCTA
Statistics
Matches: 111, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
47 37 0.33
48 30 0.27
49 7 0.06
50 37 0.33
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.20
Consensus pattern (47 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGACATGAGA
Found at i:8696108 original size:73 final size:73
Alignment explanation
Indices: 8696012--8696229 Score: 346
Period size: 73 Copynumber: 3.0 Consensus size: 73
8696002 AAAGAGCAAC
* * **
8696012 AAAAAACCTAAGCCCAACAACGCCGTTTCCCGAGCTTTCGGGGATTTAGCGGCGTTTCCAAGAAA
1 AAAAAACCTAAGCCCAACAACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAA
8696077 GCGTCGCA
66 GCGTCGCA
* * **
8696085 AAAAAATCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTGGGAAA
1 AAAAAACCTAAGCCCAACAACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAA
*
8696150 GTGTCGCA
66 GCGTCGCA
*
8696158 AAAAAACCTAAGCCCAACAACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAA
1 AAAAAACCTAAGCCCAACAACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAA
8696223 GCGTCGC
66 GCGTCGC
8696230 TAATACTCAG
Statistics
Matches: 130, Mismatches: 15, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
73 130 1.00
ACGTcount: A:0.28, C:0.24, G:0.24, T:0.24
Consensus pattern (73 bp):
AAAAAACCTAAGCCCAACAACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAAGAAA
GCGTCGCA
Found at i:8696329 original size:114 final size:114
Alignment explanation
Indices: 8696129--8696457 Score: 523
Period size: 114 Copynumber: 2.9 Consensus size: 114
8696119 CTTTCGGGGA
* * *
8696129 TTTAGCGGCGTTTTTGGGAAAGTGTCGCAAAAAAACCTAAGCCCAACAACGCCGTTTTCTAAGCT
1 TTTAGCGGCGTTTTTAGGAAAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCT
*
8696194 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGTCGCTAATACTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATACTCAGGGC
* ** *
8696243 TTTAGCGGCGCTTTTAGGAAAGCACCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTAAGCT
1 TTTAGCGGCGTTTTTAGGAAAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCT
*
8696308 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATACTCAGGGC
* * * * *
8696357 TTTAGCGGTGTTTTTAGGGAAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCATTTTTTGAGCT
1 TTTAGCGGCGTTTTTAGGAAAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCT
*
8696422 TTCGGGGATTTAGTGGCGTTTTTAAGAAAGCGCCGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGC
8696458 AAAAAATCCT
Statistics
Matches: 196, Mismatches: 19, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
114 196 1.00
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (114 bp):
TTTAGCGGCGTTTTTAGGAAAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTAAGCT
TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATACTCAGGGC
Found at i:8696460 original size:187 final size:187
Alignment explanation
Indices: 8696243--8696650 Score: 631
Period size: 187 Copynumber: 2.2 Consensus size: 187
8696233 TACTCAGGGC
* * *
8696243 TTTAGCGGCGCTTTTAGGAAAGCACCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTAAGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTAAGCT
* * *
8696308 TTCGGGGATTTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAGCGGTGTTTTT-
66 TTCGGGGATCTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAACGGCGTTTTTG
* ** *
8696372 AGGGAAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCATTTTTTGAGCTTTCGGGGA
131 A-GAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGA
* * * *
8696430 TTTAGTGGCGTTTTTAAGAAAGCGCCGCAAAAAATCCTAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTAAGCT
*
8696495 TTCGGGGATCTAGCGGCGTTTTTAAGAAAGTGCCGCTAATGCTCAGGGCTTTAACGGCGTTTTTG
66 TTCGGGGATCTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAACGGCGTTTTTG
*
8696560 AGAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGA
131 AGAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGA
*
8696617 TTTAGCGGCGTTTTT-AGAAAAGCGCCGCTAAAAA
1 TTTAGCGGCGTTTTTAAG-AAAGCGCCGCAAAAAA
8696651 TATTTTATCT
Statistics
Matches: 201, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
186 2 0.01
187 198 0.99
188 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (187 bp):
TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTCTAAGCT
TTCGGGGATCTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAACGGCGTTTTTG
AGAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGA
Found at i:8696476 original size:73 final size:73
Alignment explanation
Indices: 8696357--8696530 Score: 258
Period size: 73 Copynumber: 2.4 Consensus size: 73
8696347 TGCTCAGGGC
* * * * *
8696357 TTTAGCGGTGTTTTTAGGGAAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCATTTTTTGAGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCT
8696422 TTCGGGGA
66 TTCGGGGA
* * *
8696430 TTTAGTGGCGTTTTTAAGAAAGCGCCGCAAAAAATCCTAAGCCCAACGACGCCGTTTTCTGAGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCT
8696495 TTCGGGGA
66 TTCGGGGA
* *
8696503 TCTAGCGGCGTTTTTAAGAAAGTGCCGC
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGC
8696531 TAATGCTCAG
Statistics
Matches: 90, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
73 90 1.00
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.27
Consensus pattern (73 bp):
TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCT
TTCGGGGA
Found at i:8696598 original size:301 final size:301
Alignment explanation
Indices: 8696075--8696647 Score: 943
Period size: 301 Copynumber: 1.9 Consensus size: 301
8696065 GTTTCCAAGA
* *
8696075 AAGCGTCGCAAAAAAATCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGT
1 AAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGATTTAGCGGCGT
** * * *
8696140 TTTTGGGAAAGTGTCGCAAAAAAACCTAAGCCCAACAACGCCGTTTTCTAAGCTTTCGGGGATTT
66 TTTTAAGAAAGCGCCGCAAAAAAACCTAAGCCCAACAACGCCGTTTTCTAAGCTTTCGGGGATCT
* *
8696205 AGCGGCGTTTTTAAGAAAGCGTCGCTAATACTCAGGGCTTTAGCGGCGCTTTTAGGAAAGCACCG
131 AGCGGCGTTTTTAAGAAAGCGCCGCTAATACTCAGGGCTTTAACGGCGCTTTTAGGAAAGCACCG
8696270 CAAAAAAACATAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCGTTTTTA-AG
196 CAAAAAAACATAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCGTTTTTAGA-
8696334 AAAGCGCCGCTAATGCTCAGGGCTTTAGCGGTGTTTTTAGGG
260 AAAGCGCCGCTAATGCTCAGGGCTTTAGCGGTGTTTTTAGGG
* *
8696376 AAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCATTTTTTGAGCTTTCGGGGATTTAGTGGCGT
1 AAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGATTTAGCGGCGT
* * *
8696441 TTTTAAGAAAGCGCCGCAAAAAATCCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATCT
66 TTTTAAGAAAGCGCCGCAAAAAAACCTAAGCCCAACAACGCCGTTTTCTAAGCTTTCGGGGATCT
* * *
8696506 AGCGGCGTTTTTAAGAAAGTGCCGCTAATGCTCAGGGCTTTAACGGCG-TTTTTGAGAAAGCACC
131 AGCGGCGTTTTTAAGAAAGCGCCGCTAATACTCAGGGCTTTAACGGCGCTTTTAG-GAAAGCACC
* *
8696570 GCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGGGATTTAGCGGCGTTTTTAGA
195 GCAAAAAAACATAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCGTTTTTAGA
8696635 AAAGCGCCGCTAA
260 AAAGCGCCGCTAA
8696648 AAATATTTTA
Statistics
Matches: 251, Mismatches: 19, Indels: 4
0.92 0.07 0.01
Matches are distributed among these distances:
300 5 0.02
301 245 0.98
302 1 0.00
ACGTcount: A:0.27, C:0.23, G:0.25, T:0.25
Consensus pattern (301 bp):
AAGCGTCGCAAAAAAACCTAAGCCCAACGACGCCATTTTCTGAGCTTTCGGGGATTTAGCGGCGT
TTTTAAGAAAGCGCCGCAAAAAAACCTAAGCCCAACAACGCCGTTTTCTAAGCTTTCGGGGATCT
AGCGGCGTTTTTAAGAAAGCGCCGCTAATACTCAGGGCTTTAACGGCGCTTTTAGGAAAGCACCG
CAAAAAAACATAAGCCCAACGACGCCGTTTTCTAAGCTTTCGGGGATTTAGCGGCGTTTTTAGAA
AAGCGCCGCTAATGCTCAGGGCTTTAGCGGTGTTTTTAGGG
Found at i:8696644 original size:114 final size:114
Alignment explanation
Indices: 8696436--8696647 Score: 363
Period size: 114 Copynumber: 1.9 Consensus size: 114
8696426 GGGATTTAGT
* *
8696436 GGCGTTTTTAAGAAAGCGCCGCAAAAAATCCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGG
1 GGCGTTTTTAAGAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGG
*
8696501 GATCTAGCGGCGTTTTTAAGAAAGTGCCGCTAATGCTCAGGGCTTTAAC
66 GATCTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAAC
*
8696550 GGCGTTTTTGAGAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGG
1 GGCGTTTTTAAGAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGG
*
8696615 GATTTAGCGGCGTTTTT-AGAAAAGCGCCGCTAA
66 GATCTAGCGGCGTTTTTAAG-AAAGCGCCGCTAA
8696648 AAATATTTTA
Statistics
Matches: 92, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
113 2 0.02
114 90 0.98
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (114 bp):
GGCGTTTTTAAGAAAGCACCGCAAAAAAACCTAAGCCCAACGACGCCGTTTTCTGAGCTTTCGGG
GATCTAGCGGCGTTTTTAAGAAAGCGCCGCTAATGCTCAGGGCTTTAAC
Found at i:8697604 original size:9 final size:8
Alignment explanation
Indices: 8697587--8697611 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
8697577 ACCAAATTAT
8697587 AATAAAAA
1 AATAAAAA
8697595 AATAAAAA
1 AATAAAAA
8697603 AATAAAAA
1 AATAAAAA
8697611 A
1 A
8697612 GATATGGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (8 bp):
AATAAAAA
Found at i:8698079 original size:23 final size:25
Alignment explanation
Indices: 8698039--8698092 Score: 85
Period size: 24 Copynumber: 2.2 Consensus size: 25
8698029 AACGCCGCAA
*
8698039 AAAATAAATCAATTTATAAAA-AAC
1 AAAATAAATAAATTTATAAAATAAC
8698063 AAAATAAA-AAATTTATAAAATAAC
1 AAAATAAATAAATTTATAAAATAAC
8698087 AAAATA
1 AAAATA
8698093 GCGTCGTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
23 11 0.39
24 17 0.61
ACGTcount: A:0.70, C:0.06, G:0.00, T:0.24
Consensus pattern (25 bp):
AAAATAAATAAATTTATAAAATAAC
Found at i:8701190 original size:12 final size:12
Alignment explanation
Indices: 8701173--8701198 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8701163 CAAAACAGAC
8701173 TTTTAGCGGCGT
1 TTTTAGCGGCGT
8701185 TTTTAGCGGCGT
1 TTTTAGCGGCGT
8701197 TT
1 TT
8701199 GGATAAAAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:8701537 original size:114 final size:114
Alignment explanation
Indices: 8701337--8701775 Score: 656
Period size: 114 Copynumber: 3.9 Consensus size: 114
8701327 CTTTTGGGGA
* * *
8701337 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAATAACCTGAGCCAAAATGACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCT
*
8701402 TTCGAGGATTTAGCGACGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGC
66 TTCGAGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGC
* *
8701451 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCAAAACAACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCT
8701516 TTCGAGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGC
66 TTCGAGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGC
* *
8701565 TTTAGCGGCG-TTTTAAGAAAGCGCCGCAAAAAACTTAAGCCGAAAA-GACGCCGTTTTGTGAGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCC-AAAACGACGCCGTTTTGTGAGC
* * * * * *
8701628 TTTTGGGGATTTTGCGGCG-TTTTAA--AAACGCCGCTAATGCTCGGGGA
65 TTTCGAGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGC
* *
8701675 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAATAACCTGAGCCAAAACGACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCT
* *
8701740 TTCGGGGATTTAGCGGCGTTTTT-GGGAAAGCGCCGC
66 TTCGAGGATTTAGCGGCGTTTTTAAGG-AAGCGCCGC
8701776 AAAAAACCTA
Statistics
Matches: 294, Mismatches: 24, Indels: 14
0.89 0.07 0.04
Matches are distributed among these distances:
110 33 0.11
111 61 0.21
112 10 0.03
113 60 0.20
114 130 0.44
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (114 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCT
TTCGAGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGC
Found at i:8701751 original size:73 final size:73
Alignment explanation
Indices: 8701668--8701848 Score: 299
Period size: 73 Copynumber: 2.5 Consensus size: 73
8701658 CCGCTAATGC
* *
8701668 TCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAATAACCTGAGCCAAAACGACGCCGTTTT
1 TCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTT
8701733 GTGAGCTT
66 GTGAGCTT
*
8701741 TCGGGGATTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTT
1 TCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTT
8701806 GTGAGCTT
66 GTGAGCTT
** * *
8701814 TCAAGGATTTAGCGGCGTTTTTAAGGAAGCGCCGC
1 TCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGC
8701849 TAATGCTCAA
Statistics
Matches: 100, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
73 100 1.00
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (73 bp):
TCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTT
GTGAGCTT
Found at i:8701751 original size:224 final size:227
Alignment explanation
Indices: 8701337--8701775 Score: 663
Period size: 224 Copynumber: 1.9 Consensus size: 227
8701327 CTTTTGGGGA
* * *
8701337 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAATAACCTGAGCCAAAATGACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCAAAATGACGCCGTTTTGTGAGCT
* *
8701402 TTCGAGGATTTAGCGACGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTG
66 TTCGAGGATTTAGCGACGTTTTTAA-GAAACGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTG
*
8701467 GGAAAGCGCCGCAAAAAACCTAAGCCAAAACAACGCCGTTTTGTGAGCTTTCGAGGATTTAGCGG
130 AGAAAGCGCCGCAAAAAACCTAAGCCAAAACAACGCCGTTTTGTGAGCTTTCGAGGATTTAGCGG
8701532 CGTTTTTAAGG-AAGCGCCGCTAATGCTCAGGGC
195 CGTTTTT-AGGAAAGCGCCGCTAATGCTCAGGGC
*
8701565 TTTAGCGGCG-TTTTAAGAAAGCGCCGCAAAAAACTTAAGCCGAAAA-GACGCCGTTTTGTGAGC
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCC-AAAATGACGCCGTTTTGTGAGC
* * * * *
8701628 TTTTGGGGATTTTGCGGCG-TTTTAA-AAACGCCGCTAATGCTCGGGGATTTAGCGGCGTTTTTG
65 TTTCGAGGATTTAGCGACGTTTTTAAGAAACGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTG
* * * *
8701691 AGAAAGCGCCGCAAATAACCTGAGCCAAAACGACGCCGTTTTGTGAGCTTTCGGGGATTTAGCGG
130 AGAAAGCGCCGCAAAAAACCTAAGCCAAAACAACGCCGTTTTGTGAGCTTTCGAGGATTTAGCGG
*
8701756 CGTTTTTGGGAAAGCGCCGC
195 CGTTTTTAGGAAAGCGCCGC
8701776 AAAAAACCTA
Statistics
Matches: 192, Mismatches: 17, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
223 2 0.01
224 111 0.58
226 6 0.03
227 59 0.31
228 14 0.07
ACGTcount: A:0.25, C:0.21, G:0.29, T:0.26
Consensus pattern (227 bp):
TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCAAAATGACGCCGTTTTGTGAGCT
TTCGAGGATTTAGCGACGTTTTTAAGAAACGCCGCTAATGCTCAGGGATTTAGCGGCGTTTTTGA
GAAAGCGCCGCAAAAAACCTAAGCCAAAACAACGCCGTTTTGTGAGCTTTCGAGGATTTAGCGGC
GTTTTTAGGAAAGCGCCGCTAATGCTCAGGGC
Found at i:8701888 original size:114 final size:115
Alignment explanation
Indices: 8701748--8702063 Score: 431
Period size: 114 Copynumber: 2.8 Consensus size: 115
8701738 CTTTCGGGGA
*
8701748 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCT
** * *
8701813 TTCAAGGATTTAGCGGCGTTTTTAAG-GAAGCGCCGCTAATGCTCAAGGC
66 TTCGGGGATTTAGCGGCGTTTTTAAGTAAAACGCCGCTAATGCTCAAGGC
* * ** *
8701862 TTTAGCGGTGTTTTTAAGAAAGCGCCGCAAAAAATTTAAGCCGAAAA-GATGCCGTTTTGTGAGC
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCC-AAAACGACGCCGTTTTGTGAGC
* * * **
8701926 TTTTGGGGATTTAGCGGC-ATTTTCAGTAAAACGCCGCTAATGCTCGGGGC
65 TTTCGGGGATTTAGCGGCGTTTTTAAGTAAAACGCCGCTAATGCTCAAGGC
* * *
8701976 TTTAGCTGCGTTTTTGAGAAAGCGCCGCAAATAACCTGAGCCAAAACGACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCT
*
8702041 TTCGGGGATTTAGCGGTGTTTTT
66 TTCGGGGATTTAGCGGCGTTTTT
8702064 GGGAAAGCGC
Statistics
Matches: 172, Mismatches: 26, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
113 10 0.06
114 154 0.90
115 8 0.05
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.28
Consensus pattern (115 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCT
TTCGGGGATTTAGCGGCGTTTTTAAGTAAAACGCCGCTAATGCTCAAGGC
Found at i:8701922 original size:187 final size:184
Alignment explanation
Indices: 8701565--8701948 Score: 522
Period size: 187 Copynumber: 2.1 Consensus size: 184
8701555 TGCTCAGGGC
*
8701565 TTTAGCGGCG-TTTTAAGAAAGCGCCGCAAAAAACTTAAGCCGAAAAGACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCGAAAAGACGCCGTTTTGTGAGCT
*** * ** *
8701629 TTTGGGGATTTTGCGGCGTTTTAAAAACGCCGCTAATGCTCGGGGATTTAGCGGCGTTTTTGAGA
66 TTCAAGGATTTAGCGGCGTTTTAAAAACGCCGCTAATGCTCAAGGATTTAGCGGCGTTTTTAAGA
* *
8701694 AAGCGCCGCAAATAACCTGAGCCAAAACGACGCCGTTTTGTGAGCTTTCGGGGA
131 AAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCTTTCGGGGA
**
8701748 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAAGCC-AAAACGACGCCGTTTTGTGAGC
1 TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCGAAAA-GACGCCGTTTTGTGAGC
* * *
8701812 TTTCAAGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAAGGCTTTAGCGGTGTTTTT
65 TTTCAAGGATTTAGCGGCG-TTTTAA--AAACGCCGCTAATGCTCAAGGATTTAGCGGCGTTTTT
** * *
8701877 AAGAAAGCGCCGCAAAAAATTTAAGCCGAAAA-GATGCCGTTTTGTGAGCTTTTGGGGA
127 AAGAAAGCGCCGCAAAAAACCTAAGCC-AAAACGACGCCGTTTTGTGAGCTTTCGGGGA
*
8701935 TTTAGCGGCATTTT
1 TTTAGCGGCGTTTT
8701949 CAGTAAAACG
Statistics
Matches: 175, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
183 14 0.08
184 60 0.34
185 6 0.03
187 91 0.52
188 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (184 bp):
TTTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCGAAAAGACGCCGTTTTGTGAGCT
TTCAAGGATTTAGCGGCGTTTTAAAAACGCCGCTAATGCTCAAGGATTTAGCGGCGTTTTTAAGA
AAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCTTTCGGGGA
Found at i:8702053 original size:73 final size:73
Alignment explanation
Indices: 8701969--8702149 Score: 263
Period size: 73 Copynumber: 2.5 Consensus size: 73
8701959 CCGCTAATGC
* * * *
8701969 TCGGGGCTTTAGCTGCGTTTTTGAGAAAGCGCCGCAAATAACCTGAGCCAAAACGACGCCGTTTT
1 TCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTT
8702034 GTGAGCTT
66 GTGAGCTT
* * * **
8702042 TCGGGGATTTAGCGGTGTTTTTGGGAAAGCGCTGCAAAAAACCTAAGCCAAAACGGTGCCGTTTT
1 TCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTT
8702107 GTGAGCTT
66 GTGAGCTT
* *
8702115 TCGGGGATTTAGCGGCGTTTTTAAGGAAGCGCCGC
1 TCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGC
8702150 TAATGCTCAG
Statistics
Matches: 94, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
73 94 1.00
ACGTcount: A:0.23, C:0.20, G:0.30, T:0.27
Consensus pattern (73 bp):
TCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTT
GTGAGCTT
Found at i:8702055 original size:187 final size:187
Alignment explanation
Indices: 8701862--8702199 Score: 500
Period size: 187 Copynumber: 1.8 Consensus size: 187
8701852 TGCTCAAGGC
**
8701862 TTTAGCGGTGTTTTTAAGAAAGCGCCGCAAAAAATTTAAGCCGAAAA-GATGCCGTTTTGTGAGC
1 TTTAGCGGTGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCC-AAAACGATGCCGTTTTGTGAGC
* * * * *
8701926 TTTTGGGGATTTAGCGGC-ATTTTCAGTAAAACGCCGCTAATGCTCGGGGCTTTAGCTGCGTTTT
65 TTTCGGGGATTTAGCGGCGATTTTAAG-AAAACGCCGCTAATGCTCAGGGCTTTAGCGGCATTTT
* *
8701990 TGAGAAAGCGCCGCAAATAACCTGAGCCAAAACGACGCCGTTTTGTGAGCTTTCGGGGA
129 TAAGAAAGCGCCGCAAAAAACCTGAGCCAAAACGACGCCGTTTTGTGAGCTTTCGGGGA
** * *
8702049 TTTAGCGGTGTTTTTGGGAAAGCGCTGCAAAAAACCTAAGCCAAAACGGTGCCGTTTTGTGAGCT
1 TTTAGCGGTGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGATGCCGTTTTGTGAGCT
* * *
8702114 TTCGGGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCATTTTTA
66 TTCGGGGATTTAGCGGCGATTTTAAGAAAACGCCGCTAATGCTCAGGGCTTTAGCGGCATTTTTA
8702179 AGAAAGCGCCGCAAAAAACCT
131 AGAAAGCGCCGCAAAAAACCT
8702200 AAGCACTTTC
Statistics
Matches: 133, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
186 4 0.03
187 123 0.92
188 6 0.05
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.27
Consensus pattern (187 bp):
TTTAGCGGTGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCAAAACGATGCCGTTTTGTGAGCT
TTCGGGGATTTAGCGGCGATTTTAAGAAAACGCCGCTAATGCTCAGGGCTTTAGCGGCATTTTTA
AGAAAGCGCCGCAAAAAACCTGAGCCAAAACGACGCCGTTTTGTGAGCTTTCGGGGA
Found at i:8702081 original size:301 final size:298
Alignment explanation
Indices: 8701451--8702203 Score: 1319
Period size: 301 Copynumber: 2.5 Consensus size: 298
8701441 TGCTCAGGGC
*
8701451 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCAAAACAACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCT
8701516 TTCGAGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCG-TTTTA
66 TTCGAGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTA
*
8701580 AGAAAGCGCCGCAAAAAACTTAAGCCGAAAAGACGCCGTTTTGTGAGCTTTTGGGGATTTTGCGG
131 AGAAAGCGCCGCAAAAAACTTAAGCCGAAAAGACGCCGTTTTGTGAGCTTTTGGGGATTTAGCGG
*
8701645 CGTTTTAAAAACGCCGCTAATGCTCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAATAAC
196 CATTTTAAAAACGCCGCTAATGCTCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAATAAC
8701710 CTGAGCCAAAACGACGCCGTTTTGTGAGCTTTCGGGGA
261 CTGAGCCAAAACGACGCCGTTTTGTGAGCTTTCGGGGA
8701748 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCT
* * *
8701813 TTCAAGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAAGGCTTTAGCGGTGTTTTTA
66 TTCGAGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTA
* *
8701878 AGAAAGCGCCGCAAAAAATTTAAGCCGAAAAGATGCCGTTTTGTGAGCTTTTGGGGATTTAGCGG
131 AGAAAGCGCCGCAAAAAACTTAAGCCGAAAAGACGCCGTTTTGTGAGCTTTTGGGGATTTAGCGG
* *
8701943 CATTTTCAGTAAAACGCCGCTAATGCTCGGGGCTTTAGCTGCGTTTTTGAGAAAGCGCCGCAAAT
196 CATTTT-A--AAAACGCCGCTAATGCTCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAT
8702008 AACCTGAGCCAAAACGACGCCGTTTTGTGAGCTTTCGGGGA
258 AACCTGAGCCAAAACGACGCCGTTTTGTGAGCTTTCGGGGA
* * **
8702049 TTTAGCGGTGTTTTTGGGAAAGCGCTGCAAAAAACCTAAGCCAAAACGGTGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCT
* *
8702114 TTCGGGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCATTTTTA
66 TTCGAGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTA
*
8702179 AGAAAGCGCCGCAAAAAACCTAAGC
131 AGAAAGCGCCGCAAAAAACTTAAGC
8702204 ACTTTCGGGG
Statistics
Matches: 431, Mismatches: 21, Indels: 4
0.95 0.05 0.01
Matches are distributed among these distances:
297 120 0.28
298 72 0.17
299 1 0.00
301 238 0.55
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (298 bp):
TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCT
TTCGAGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGCTTTAGCGGCGTTTTTA
AGAAAGCGCCGCAAAAAACTTAAGCCGAAAAGACGCCGTTTTGTGAGCTTTTGGGGATTTAGCGG
CATTTTAAAAACGCCGCTAATGCTCGGGGATTTAGCGGCGTTTTTGAGAAAGCGCCGCAAATAAC
CTGAGCCAAAACGACGCCGTTTTGTGAGCTTTCGGGGA
Found at i:8702517 original size:22 final size:21
Alignment explanation
Indices: 8702492--8702539 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 21
8702482 GTGTTATCAT
* *
8702492 TTTAAGGTTTATGGATTATGGG
1 TTTAAGGGTCATGGATTAT-GG
* *
8702514 TTTAGGGGTCATGGTTTATGG
1 TTTAAGGGTCATGGATTATGG
8702535 TTTAA
1 TTTAA
8702540 AGGCTGAGGT
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.21, C:0.02, G:0.31, T:0.46
Consensus pattern (21 bp):
TTTAAGGGTCATGGATTATGG
Found at i:8702639 original size:21 final size:21
Alignment explanation
Indices: 8702588--8702628 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
8702578 AGGGTTAGTA
* *
8702588 ATTAGGGGTTAGAGGTTTAGG
1 ATTAGGGATTAGAGGTTAAGG
8702609 ATTAGGGATTAGAGGTTAAG
1 ATTAGGGATTAGAGGTTAAG
8702629 AGTTAGTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.29, C:0.00, G:0.39, T:0.32
Consensus pattern (21 bp):
ATTAGGGATTAGAGGTTAAGG
Found at i:8707048 original size:43 final size:43
Alignment explanation
Indices: 8707000--8707229 Score: 262
Period size: 43 Copynumber: 5.3 Consensus size: 43
8706990 TTTTTTGTGA
* *
8707000 TCTTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCAGGT
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGT
* ** * * *
8707043 TCTTTAGTGGCGTTAATAGGAAAAGGGCCGCTAAAGGTCAAGT
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGT
* * ** * *
8707086 TCTTTAGCGGCGTTTGTAGGAAAAGTGCCGCTAAAGAACCTGA
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGT
* * * *
8707129 CCTTTAGCGGCGTTTGTGGGTAAAGCGTCGCTAAAGATCATGT
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGT
** * *
8707172 TCTTTAGCGGCGTTTGTGAAAAAAACGCCGCCAAAGGTCATGT
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGT
8707215 TCTTTAGCGGCGTTT
1 TCTTTAGCGGCGTTT
8707230 TTTCAATTAA
Statistics
Matches: 156, Mismatches: 31, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 156 1.00
ACGTcount: A:0.24, C:0.18, G:0.29, T:0.28
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGT
Found at i:8707348 original size:22 final size:22
Alignment explanation
Indices: 8707323--8707365 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8707313 TAGCGGCGCT
* *
8707323 AAAAAATGCCGCTAAAGGCCTA
1 AAAAAACGCCGCTAAAAGCCTA
*
8707345 AAAAAACGCCTCTAAAAGCCT
1 AAAAAACGCCGCTAAAAGCCT
8707366 GTTTTGGTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.47, C:0.26, G:0.14, T:0.14
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAAGCCTA
Found at i:8708007 original size:43 final size:43
Alignment explanation
Indices: 8707910--8708115 Score: 213
Period size: 43 Copynumber: 4.8 Consensus size: 43
8707900 TTTTTGCAAG
* * **
8707910 AAGCGTCGCTAAAGGT-TTGTTCTATAGCGGCGTTTGT-AAAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAA
* * *
8707951 AAACGCCGCTAAAGGTCTTGATCTACAGTGGCGTTTGTGGGAA
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAA
** * * * *
8707994 AATTGCCGCTAAAGGTCTTGAGCTATAGCGGCGTTTGTTGTAG
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAA
* * * *
8708037 AAGCGCCGCTAAAGATCCTGATCTATAACGGCGTTTGCGAGG-A
1 AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTG-GGAA
8708080 AAGCGCCGCTAAAGGTCATTG-TCTATAGCGGCGTTT
1 AAGCGCCGCTAAAGGTC-TTGATCTATAGCGGCGTTT
8708116 ATTTCCAAAA
Statistics
Matches: 133, Mismatches: 28, Indels: 6
0.80 0.17 0.04
Matches are distributed among these distances:
41 14 0.11
42 18 0.14
43 98 0.74
44 3 0.02
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.28
Consensus pattern (43 bp):
AAGCGCCGCTAAAGGTCTTGATCTATAGCGGCGTTTGTGGGAA
Found at i:8726329 original size:15 final size:16
Alignment explanation
Indices: 8726311--8726340 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8726301 TTCTAGTTAA
8726311 ATGCT-TTTGAGTTTC
1 ATGCTATTTGAGTTTC
8726326 ATGCTATTTGAGTTT
1 ATGCTATTTGAGTTT
8726341 TCTTGTATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.17, C:0.10, G:0.20, T:0.53
Consensus pattern (16 bp):
ATGCTATTTGAGTTTC
Found at i:8742594 original size:114 final size:114
Alignment explanation
Indices: 8742294--8742942 Score: 933
Period size: 114 Copynumber: 5.7 Consensus size: 114
8742284 CGTTTTCCAA
* * * * * ** *
8742294 AAAGCGCCGC-AAACAACCTAAGTCCAACGACGTCGTTTTCTTAGCTTTTGGGGATTTAGCTGCG
1 AAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAGCGGCG
*
8742358 TTTTTAATAAAGCGCCGCTAATGGTCAGGGCTTTAGCGGCGTTTTTGAG
66 TTTTTAAGAAAGCGCCGCTAATGGTCAGGGCTTTAGCGGCGTTTTTGAG
*
8742407 GAAGCGCCGCAAAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAGCGGC
1 AAAGCGCCGC-AAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAGCGGC
* * *
8742472 GTTTTTAAGAAAGCGCCACTAATAGTCAGGGCTTTAGCGGCGTTTTAGAG
65 GTTTTTAAGAAAGCGCCGCTAATGGTCAGGGCTTTAGCGGCGTTTTTGAG
* * * *
8742522 AAAGCGCCGCAAAAAAACATAAGCCCAACAACGCCGTTTTTTGGGCTGTTGGGGATTTAGCAGCG
1 AAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAGCGGCG
* * *
8742587 TTTTTAAGAAAGCGCCGCTAATGGTCAGGGATTCAGCGGCGTTTTTGAA
66 TTTTTAAGAAAGCGCCGCTAATGGTCAGGGCTTTAGCGGCGTTTTTGAG
** *
8742636 AAAGCGCCAAAAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGTGATTTAGCGGCG
1 AAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAGCGGCG
* * *
8742701 TTTTTAAGAAAGCGCCGCCAATGGTCAGGGCTTTAACGGCGTTTTTGAA
66 TTTTTAAGAAAGCGCCGCTAATGGTCAGGGCTTTAGCGGCGTTTTTGAG
* * *
8742750 AAAGCGCCGCAAAAAAAAATAAGTCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAGCGACG
1 AAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAGCGGCG
* * * * *
8742815 TTTTTAAGAAAGCACCGCTAATGCTTAGGGCTTTAACGGCATTTTTGAG
66 TTTTTAAGAAAGCGCCGCTAATGGTCAGGGCTTTAGCGGCGTTTTTGAG
* * **
8742864 AAAGTGCTGC-AAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTCAGGGATTTAGCGGCG
1 AAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAGCGGCG
8742928 TTTTTAAGAAAGCGC
66 TTTTTAAGAAAGCGC
8742943 AGTAAAAAAA
Statistics
Matches: 479, Mismatches: 55, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
113 72 0.15
114 307 0.64
115 100 0.21
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.26
Consensus pattern (114 bp):
AAAGCGCCGCAAAAAAACATAAGCCCAACGACGCCGTTTTGTGGGCTTTTGGGGATTTAGCGGCG
TTTTTAAGAAAGCGCCGCTAATGGTCAGGGCTTTAGCGGCGTTTTTGAG
Found at i:8743170 original size:15 final size:14
Alignment explanation
Indices: 8743149--8743200 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
8743139 ATTTAAGGCC
8743149 GGTTTAGGGATTAT
1 GGTTTAGGGATTAT
8743163 GTGTTTAGGGATTAT
1 G-GTTTAGGGATTAT
* *
8743178 GGATTAAGGATTAT
1 GGTTTAGGGATTAT
*
8743192 GGATTAGGG
1 GGTTTAGGG
8743201 GTTGGGATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
14 20 0.59
15 14 0.41
ACGTcount: A:0.25, C:0.00, G:0.37, T:0.38
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:8743455 original size:15 final size:15
Alignment explanation
Indices: 8743435--8743481 Score: 62
Period size: 14 Copynumber: 3.3 Consensus size: 15
8743425 TATTTTAAGG
*
8743435 TTTAGGGAGTATGGA
1 TTTAGGGATTATGGA
8743450 TTTAGGGATTAT-GA
1 TTTAGGGATTATGGA
*
8743464 ATTAGGGATTATGG-
1 TTTAGGGATTATGGA
8743478 TTTA
1 TTTA
8743482 AGTGTTTGGA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 16 0.57
15 12 0.43
ACGTcount: A:0.28, C:0.00, G:0.32, T:0.40
Consensus pattern (15 bp):
TTTAGGGATTATGGA
Found at i:8743566 original size:15 final size:14
Alignment explanation
Indices: 8743493--8743563 Score: 74
Period size: 15 Copynumber: 4.9 Consensus size: 14
8743483 GTGTTTGGAT
8743493 TTAAGGTTTAGGGG
1 TTAAGGTTTAGGGG
8743507 TTAAGGGTTTAGGGG
1 TTAA-GGTTTAGGGG
*
8743522 TT-AGATGTTAGGGG
1 TTAAGGT-TTAGGGG
*
8743536 TTAAGAG-TTAGGGAT
1 TTAAG-GTTTAGGG-G
8743551 TTAAGGTTTAGGG
1 TTAAGGTTTAGGG
8743564 ATTCAGGGAT
Statistics
Matches: 48, Mismatches: 3, Indels: 11
0.77 0.05 0.18
Matches are distributed among these distances:
13 2 0.04
14 21 0.44
15 25 0.52
ACGTcount: A:0.24, C:0.00, G:0.41, T:0.35
Consensus pattern (14 bp):
TTAAGGTTTAGGGG
Found at i:8744314 original size:85 final size:87
Alignment explanation
Indices: 8744220--8744394 Score: 266
Period size: 88 Copynumber: 2.0 Consensus size: 87
8744210 TTATGGAAAA
* * *
8744220 CGCCGCAAAAAATAAATCAATTT-T-AAAAA-AATAAAAAAATTTGGCATAGAAAAACGGTGTCA
1 CGCCACAAAAAATAAATCAATTTATAAAAAATAAAAAAAAAATTT-GCATAGAAAAACGGCGTCA
8744282 TTTTGTTCAAAATGAAATAGCGG
65 TTTTGTTCAAAATGAAATAGCGG
*
8744305 CGCCACAAAAAATAAATCAATTTAGTAAAAAATAAAAAAAAAATTTGCATAGCAAAACGGCGTCA
1 CGCCACAAAAAATAAATCAATTTA-TAAAAAATAAAAAAAAAATTTGCATAGAAAAACGGCGTCA
*
8744370 TTTTGTTCAAAATGAAATCGCGG
65 TTTTGTTCAAAATGAAATAGCGG
8744393 CG
1 CG
8744395 TTTTTATAAA
Statistics
Matches: 81, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
85 22 0.27
87 1 0.01
88 46 0.57
89 12 0.15
ACGTcount: A:0.48, C:0.14, G:0.15, T:0.23
Consensus pattern (87 bp):
CGCCACAAAAAATAAATCAATTTATAAAAAATAAAAAAAAAATTTGCATAGAAAAACGGCGTCAT
TTTGTTCAAAATGAAATAGCGG
Found at i:8744849 original size:148 final size:148
Alignment explanation
Indices: 8744513--8745489 Score: 1539
Period size: 149 Copynumber: 6.7 Consensus size: 148
8744503 CGACGTTTTT
*
8744513 GCAATAGTGGCGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGCCCCCTTT
1 GCAATAGCGGCGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGCCCCCTTT
** * *
8744578 TAGCATAGCATAGCAAAACAACGTAGTTTTATTCAAAATGAAATTTTTTTGCGGCGTTTTTATGA
66 TAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAATTTTTTTGCGGCGTTTGTGT-A
*
8744643 AAAACGACGCTAAAGGTAA
130 AAAACGCCGCTAAAGGTAA
*
8744662 GCAATAGCGGCGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGCTCCCTTT
1 GCAATAGCGGCGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGCCCCCTTT
* * *
8744727 TAGCATAGCATAGCAAAACGGCGTAGTTTTGTTCAAAATGAAATTTCTTTGCGGCGTTTGCGTAA
66 TAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAATTTTTTTGCGGCGTTTGTGTAA
*
8744792 AAATGCCGCTAAAGGTAA
131 AAACGCCGCTAAAGGTAA
*
8744810 GCAATAGCGGCGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATAGCCCCCTTT
1 GCAATAGCGGCGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGCCCCCTTT
* * *
8744875 TAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAATTTTTTTGCAGCGTTTTTATGA
66 TAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAATTTTTTTGCGGCGTTTGTGT-A
8744940 AAAACGCCGCTAAAGGTAA
130 AAAACGCCGCTAAAGGTAA
*
8744959 GCAATAGCGGCGTTTTTGTAAAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGCCCACTT
1 GCAATAGCGGCGTTTTTGT-AAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGCCCCCTT
* * *
8745024 TTAGCATAGCATAGCAAAACGGCGTAGTTTTGTTCAAAATGAAATTTTTTTACGGCGTTTGCGTA
65 TTAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAATTTTTTTGCGGCGTTTGTGTA
8745089 AAAACGCCGCTAAAGGTAA
130 AAAACGCCGCTAAAGGTAA
*
8745108 GCAATAGCGGCGTTTTTGTAAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATAGCCCCCTT
1 GCAATAGCGGCGTTTTTGT-AAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGCCCCCTT
* *
8745173 TTAACATAGCATAGCAAAACGGCGCAGTTTTATTCAAAATGAAATTTTTTTGCGGCGTTT-T-T-
65 TTAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAATTTTTTTGCGGCGTTTGTGTA
*
8745235 ---------C-ATAGGTAA
130 AAAACGCCGCTAAAGGTAA
*
8745244 GCAATAGCAGCGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGCCCCCTTT
1 GCAATAGCGGCGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGCCCCCTTT
* *
8745309 TAGCATAGCATAGCAAAACGGCATAGTTTTGTTCAAAATGAAATTTTTTTGCGGCGTTTGTGTAA
66 TAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAATTTTTTTGCGGCGTTTGTGTAA
*
8745374 AAACGCCGCTAAAAGTAA
131 AAACGCCGCTAAAGGTAA
* *
8745392 GCAATAGCGGCGTTTTTGTAAAAAACGTCACAAAATAATTTTACTTTTAAAAAATAGCCCCCTTT
1 GCAATAGCGGCGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGCCCCCTTT
* * *
8745457 TAGAATAGCATAGCAAAACGGAGTAATTTTATT
66 TAGCATAGCATAGCAAAACGGCGTAGTTTTATT
8745490 TTGGCGTTTT
Statistics
Matches: 761, Mismatches: 52, Indels: 31
0.90 0.06 0.04
Matches are distributed among these distances:
135 100 0.13
136 26 0.03
137 2 0.00
147 2 0.00
148 234 0.31
149 296 0.39
150 101 0.13
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (148 bp):
GCAATAGCGGCGTTTTTGTAAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGCCCCCTTT
TAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAATTTTTTTGCGGCGTTTGTGTAA
AAACGCCGCTAAAGGTAA
Found at i:8745518 original size:284 final size:282
Alignment explanation
Indices: 8744513--8745489 Score: 1250
Period size: 297 Copynumber: 3.4 Consensus size: 282
8744503 CGACGTTTTT
* *
8744513 GCAATAGTGGCGTTTTTGT-AAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGCCCCCTT
1 GCAATAGCGGCGTTTTTGTAAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATAGCCCCCTT
* * * * * *
8744577 TTAGCATAGCATAGCAAAAC-AACGTAGTTTTATTCAAAATGAAATTTTTTTGCGGCGTTTTTAT
66 TTAACATAGCATAGCAAAACGGA-GCAATTTTATT---AATGAAATTTTTTAGCAGCG-TTTT-T
*
8744641 GAAAAACGACGCTAAAGGTAAGCAATAGCGGCGTTTTTGT-AAAAAACGCCACAAAATAATTTTA
125 ------C-A---T--AGGTAAGCAATAGCAGCGTTTTTGTAAAAAAACGCCACAAAATAATTTTA
*
8744705 CTTTAAAAAAATAGCTCC-CTTTTAGCATAGCATAGCAAAACGGCGTAGTTTTGTTCAAAATGAA
178 CTTTAAAAAAATAGC-CCACTTTTAGCATAGCATAGCAAAACGGCATAGTTTTGTTCAAAATGAA
* * * *
8744769 ATTTCTTTGCGGCGTTTGCGTAAAAATGCCGCTAAAGGTAA
242 ATTTTTTTACGGCGTTTGCGTAAAAACGCCGCTAAAAGTAA
8744810 GCAATAGCGGCGTTTTTGT-AAAAAACGCCACAAAATAATTTTACTTTTAAAAAATAGCCCCCTT
1 GCAATAGCGGCGTTTTTGTAAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATAGCCCCCTT
* * * * *
8744874 TTAGCATAGCATAGCAAAACGGCGTAGTTTTATTCAAAATGAAATTTTTTTGCAGCGTTTTTATG
66 TTAACATAGCATAGCAAAACGGAGCAATTTTATT---AATGAAATTTTTTAGCAGCG-TTTT-T-
* *
8744939 AAAAACGCCGCTAAAGGTAAGCAATAGCGGCGTTTTTGTAAAAAAACGCCACAAAATAATTTTAC
125 ----------C-ATAGGTAAGCAATAGCAGCGTTTTTGTAAAAAAACGCCACAAAATAATTTTAC
*
8745004 TTTAAAAAAATAGCCCACTTTTAGCATAGCATAGCAAAACGGCGTAGTTTTGTTCAAAATGAAAT
179 TTTAAAAAAATAGCCCACTTTTAGCATAGCATAGCAAAACGGCATAGTTTTGTTCAAAATGAAAT
*
8745069 TTTTTTACGGCGTTTGCGTAAAAACGCCGCTAAAGGTAA
244 TTTTTTACGGCGTTTGCGTAAAAACGCCGCTAAAAGTAA
8745108 GCAATAGCGGCGTTTTTGTAAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATAGCCCCCTT
1 GCAATAGCGGCGTTTTTGTAAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATAGCCCCCTT
* * * *
8745173 TTAACATAGCATAGCAAAACGGCGCAGTTTTATTCAAAATGAAATTTTTTTGCGGCGTTTTTCAT
66 TTAACATAGCATAGCAAAACGGAGCAATTTTATT---AATGAAATTTTTTAGCAGCGTTTTTCAT
8745238 AGGTAAGCAATAGCAGCGTTTTTGT-AAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGC
128 AGGTAAGCAATAGCAGCGTTTTTGTAAAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGC
* *
8745302 CCCCTTTTAGCATAGCATAGCAAAACGGCATAGTTTTGTTCAAAATGAAATTTTTTTGCGGCGTT
193 CCACTTTTAGCATAGCATAGCAAAACGGCATAGTTTTGTTCAAAATGAAATTTTTTTACGGCGTT
*
8745367 TGTGTAAAAACGCCGCTAAAAGTAA
258 TGCGTAAAAACGCCGCTAAAAGTAA
*
8745392 GCAATAGCGGCGTTTTTGT-AAAAAACGTCACAAAATAATTTTACTTTTAAAAAATAGCCCCCTT
1 GCAATAGCGGCGTTTTTGTAAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATAGCCCCCTT
*
8745456 TTAGA-ATAGCATAGCAAAACGGAGTAATTTTATT
66 TTA-ACATAGCATAGCAAAACGGAGCAATTTTATT
8745490 TTGGCGTTTT
Statistics
Matches: 640, Mismatches: 30, Indels: 34
0.91 0.04 0.05
Matches are distributed among these distances:
283 73 0.11
284 144 0.22
285 25 0.04
286 1 0.00
297 150 0.23
298 146 0.23
299 99 0.15
302 2 0.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.31
Consensus pattern (282 bp):
GCAATAGCGGCGTTTTTGTAAAAAAACGCCACAAAATAATTTTACTTTTAAAAAATAGCCCCCTT
TTAACATAGCATAGCAAAACGGAGCAATTTTATTAATGAAATTTTTTAGCAGCGTTTTTCATAGG
TAAGCAATAGCAGCGTTTTTGTAAAAAAACGCCACAAAATAATTTTACTTTAAAAAAATAGCCCA
CTTTTAGCATAGCATAGCAAAACGGCATAGTTTTGTTCAAAATGAAATTTTTTTACGGCGTTTGC
GTAAAAACGCCGCTAAAAGTAA
Found at i:8748962 original size:12 final size:12
Alignment explanation
Indices: 8748942--8748974 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
8748932 TTGTTTCAGG
8748942 TTGTATTATTAA
1 TTGTATTATTAA
*
8748954 TTGTGTTATTAA
1 TTGTATTATTAA
8748966 TT-TATTATT
1 TTGTATTATT
8748975 TTAAATTCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 6 0.32
12 13 0.68
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (12 bp):
TTGTATTATTAA
Done.