Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 33 of 173
Found at i:8749348 original size:43 final size:42
Alignment explanation
Indices: 8749231--8749350 Score: 125
Period size: 43 Copynumber: 2.8 Consensus size: 42
8749221 GGTTATGATT
* * * *
8749231 TTTAGTGGCATTTGTGACAAAAGCGTCGCTAAAGCTCATGGTC
1 TTTAGCGGCGTTTGTGATAAACGCG-CGCTAAAGCTCATGGTC
* *
8749274 TTTAGCGGCGTTTGTGATAGACGCGCTGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGATAAACGCGC-GCTAAAGCTCATGGTC
* *
8749317 TTTAGCGGCTTTTTTTGCATAAACGC-CGCTAAAG
1 TTTAGCGGC-GTTTGTG-ATAAACGCGCGCTAAAG
8749351 TTAGTGGCGT
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
42 1 0.02
43 51 0.78
44 6 0.09
45 7 0.11
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.32
Consensus pattern (42 bp):
TTTAGCGGCGTTTGTGATAAACGCGCGCTAAAGCTCATGGTC
Found at i:8750424 original size:50 final size:50
Alignment explanation
Indices: 8750349--8750471 Score: 149
Period size: 50 Copynumber: 2.5 Consensus size: 50
8750339 TAACAACTCA
* * *
8750349 CCACAACGACTTTCCAGAGAATTTGCCATAAAGGATTTCCAAA-AGATACG
1 CCACAAAGGCTTTCCAGAGAATTTGCCACAAAGGATTTCCAAAGA-ATACG
* * ** *
8750399 CCACAAAGGCTTTCCAAAGAATTTGCCACAAAGGCTTTCCGGAGAATTCG
1 CCACAAAGGCTTTCCAGAGAATTTGCCACAAAGGATTTCCAAAGAATACG
*
8750449 CCACAAAGGCTTTCTAGAGAATT
1 CCACAAAGGCTTTCCAGAGAATT
8750472 CTTGAGTTTA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
50 61 0.98
51 1 0.02
ACGTcount: A:0.35, C:0.24, G:0.18, T:0.23
Consensus pattern (50 bp):
CCACAAAGGCTTTCCAGAGAATTTGCCACAAAGGATTTCCAAAGAATACG
Found at i:8750426 original size:25 final size:25
Alignment explanation
Indices: 8750349--8750472 Score: 133
Period size: 25 Copynumber: 5.0 Consensus size: 25
8750339 TAACAACTCA
* * *
8750349 CCACAACGACTTTCCAGAGAATTTG
1 CCACAAAGGCTTTCCAGAGAATTCG
* * * *
8750374 CCATAAAGGATTTCCA-AAAGATACG
1 CCACAAAGGCTTTCCAGAGA-ATTCG
* *
8750399 CCACAAAGGCTTTCCAAAGAATTTG
1 CCACAAAGGCTTTCCAGAGAATTCG
*
8750424 CCACAAAGGCTTTCCGGAGAATTCG
1 CCACAAAGGCTTTCCAGAGAATTCG
*
8750449 CCACAAAGGCTTTCTAGAGAATTC
1 CCACAAAGGCTTTCCAGAGAATTC
8750473 TTGAGTTTAC
Statistics
Matches: 80, Mismatches: 17, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
24 2 0.03
25 76 0.95
26 2 0.03
ACGTcount: A:0.35, C:0.25, G:0.18, T:0.23
Consensus pattern (25 bp):
CCACAAAGGCTTTCCAGAGAATTCG
Found at i:8751362 original size:3 final size:3
Alignment explanation
Indices: 8751354--8751406 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
8751344 TGATCTTAAC
8751354 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
1 GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA GAA
8751402 GAA GA
1 GAA GA
8751407 GAATGTTGAG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (3 bp):
GAA
Found at i:8753907 original size:23 final size:26
Alignment explanation
Indices: 8753880--8753934 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 26
8753870 TCATAGGCAA
8753880 TATATAAT-TACT-TCATG-CCAAAAC
1 TATATAATATA-TATCATGACCAAAAC
8753904 -ATAT-ATATATATCATGACCAAAAC
1 TATATAATATATATCATGACCAAAAC
8753928 TATATAA
1 TATATAA
8753935 CTCAAGCATT
Statistics
Matches: 26, Mismatches: 0, Indels: 8
0.76 0.00 0.24
Matches are distributed among these distances:
22 3 0.12
23 11 0.42
24 7 0.27
25 4 0.15
26 1 0.04
ACGTcount: A:0.47, C:0.16, G:0.04, T:0.33
Consensus pattern (26 bp):
TATATAATATATATCATGACCAAAAC
Found at i:8762874 original size:32 final size:32
Alignment explanation
Indices: 8762838--8762898 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
8762828 AGCTCTTGGT
8762838 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
1 TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
*
8762870 TTTTTCGTGTTGTCAAAGAGTTGAACAAT
1 TTTTTCATGTTGTCAAAGAGTTGAACAAT
8762899 AATAGATGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.30, C:0.10, G:0.21, T:0.39
Consensus pattern (32 bp):
TTTTTCATGTTGTCAAAGAGTTGAACAATGGA
Found at i:8768427 original size:3 final size:3
Alignment explanation
Indices: 8768405--8768466 Score: 60
Period size: 3 Copynumber: 21.3 Consensus size: 3
8768395 CTTTTTTTTC
*
8768405 TCT TCT CCT TC- TCTT TCT TCT TCT TC- TCT T-T CTCT TCT TCT TCT
1 TCT TCT TCT TCT TC-T TCT TCT TCT TCT TCT TCT -TCT TCT TCT TCT
*
8768449 TCT TCT TTT TC- TCT TCT T
1 TCT TCT TCT TCT TCT TCT T
8768467 ATCATACTGC
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
2 7 0.14
3 39 0.80
4 3 0.06
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:8768428 original size:23 final size:23
Alignment explanation
Indices: 8768402--8768463 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 23
8768392 ATCCTTTTTT
*
8768402 TTCTCTTCTCCTTCTCTTTCTTC
1 TTCTCTTCTCTTTCTCTTTCTTC
8768425 -T-TCTTCTCTTTCTC-TTCTTC
1 TTCTCTTCTCTTTCTCTTTCTTC
*
8768445 TTCTTCTTCTTTTTCTCTT
1 TTC-TCTTCTCTTTCTCTT
8768464 CTTATCATAC
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
20 6 0.18
21 13 0.39
22 1 0.03
23 12 0.36
24 1 0.03
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (23 bp):
TTCTCTTCTCTTTCTCTTTCTTC
Found at i:8768464 original size:23 final size:23
Alignment explanation
Indices: 8768405--8768466 Score: 92
Period size: 23 Copynumber: 2.8 Consensus size: 23
8768395 CTTTTTTTTC
*
8768405 TCTTCTCCTTCTC-T-TTCTTCT
1 TCTTCTCTTTCTCTTCTTCTTCT
8768426 TCTTCTCTTTCTCTTCTTCTTCT
1 TCTTCTCTTTCTCTTCTTCTTCT
*
8768449 TCTTCTTTTTCTCTTCTT
1 TCTTCTCTTTCTCTTCTT
8768467 ATCATACTGC
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.32
22 1 0.03
23 24 0.65
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (23 bp):
TCTTCTCTTTCTCTTCTTCTTCT
Found at i:8769238 original size:14 final size:14
Alignment explanation
Indices: 8769219--8769259 Score: 57
Period size: 14 Copynumber: 2.9 Consensus size: 14
8769209 CTACTATGGT
8769219 AAAATAAAATATTA
1 AAAATAAAATATTA
*
8769233 AAAAT-AAATATTTT
1 AAAATAAAATA-TTA
8769247 AAAATAAAATATT
1 AAAATAAAATATT
8769260 TGTCACTTTT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
13 5 0.21
14 14 0.58
15 5 0.21
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
AAAATAAAATATTA
Found at i:8772262 original size:57 final size:57
Alignment explanation
Indices: 8772149--8772262 Score: 158
Period size: 57 Copynumber: 2.0 Consensus size: 57
8772139 CTCCACTCCA
* * **
8772149 ACATTTACAGTTTCACCTCCATTTATTTGAACAGAAGCGGAGCTCTTATTGTGCTGC
1 ACATTTAAAGTTTCACCTCCATTTATTTGAACAGAAGCAGAGCTCTTATTCAGCTGC
* *
8772206 ACATTTAAAGTTTCACCTCCATTTATTTGAACAGAAGACAG-GCTTTTCTTCAGCTGC
1 ACATTTAAAGTTTCACCTCCATTTATTTGAACAGAAG-CAGAGCTCTTATTCAGCTGC
8772263 TCTTCAACAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
57 48 0.96
58 2 0.04
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.35
Consensus pattern (57 bp):
ACATTTAAAGTTTCACCTCCATTTATTTGAACAGAAGCAGAGCTCTTATTCAGCTGC
Found at i:8778297 original size:23 final size:23
Alignment explanation
Indices: 8778247--8778297 Score: 59
Period size: 23 Copynumber: 2.2 Consensus size: 23
8778237 AGTAAAATTC
**
8778247 AAAATATTATTACAATAATGTTA
1 AAAATATTATTACAATAATGAAA
*
8778270 AAAATATTCTTACAATAA-GAAA
1 AAAATATTATTACAATAATGAAA
8778292 ACAAAT
1 A-AAAT
8778298 GTCTAAGATG
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 3 0.12
23 21 0.88
ACGTcount: A:0.57, C:0.08, G:0.04, T:0.31
Consensus pattern (23 bp):
AAAATATTATTACAATAATGAAA
Found at i:8786073 original size:18 final size:18
Alignment explanation
Indices: 8786052--8786092 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
8786042 GGTGATGTAG
8786052 CAGATGAGGG-AGATGCAA
1 CAGATGAGGGCA-ATGCAA
*
8786070 CAGAGGAGGGCAATGCAA
1 CAGATGAGGGCAATGCAA
8786088 CAGAT
1 CAGAT
8786093 AGGTTGGGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 19 0.95
19 1 0.05
ACGTcount: A:0.39, C:0.15, G:0.37, T:0.10
Consensus pattern (18 bp):
CAGATGAGGGCAATGCAA
Found at i:8786866 original size:7 final size:7
Alignment explanation
Indices: 8786856--8786888 Score: 57
Period size: 7 Copynumber: 4.7 Consensus size: 7
8786846 CCTAAATTAT
8786856 AAACCCA
1 AAACCCA
*
8786863 AAACCAA
1 AAACCCA
8786870 AAACCCA
1 AAACCCA
8786877 AAACCCA
1 AAACCCA
8786884 AAACC
1 AAACC
8786889 ATAAACACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.61, C:0.39, G:0.00, T:0.00
Consensus pattern (7 bp):
AAACCCA
Found at i:8786894 original size:14 final size:14
Alignment explanation
Indices: 8786863--8786909 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
8786853 TATAAACCCA
*
8786863 AAACCAAAAACCCA-
1 AAACCCAAAA-CCAT
8786877 AAACCCAAAACCAT
1 AAACCCAAAACCAT
* *
8786891 AAACACTAAACCAT
1 AAACCCAAAACCAT
8786905 AAACC
1 AAACC
8786910 TACACTCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
13 3 0.11
14 25 0.89
ACGTcount: A:0.60, C:0.34, G:0.00, T:0.06
Consensus pattern (14 bp):
AAACCCAAAACCAT
Found at i:8786901 original size:21 final size:21
Alignment explanation
Indices: 8786855--8786902 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
8786845 CCCTAAATTA
*
8786855 TAAACCCAAAACCAAAAACCC
1 TAAACCCAAAACCAAAAACAC
* *
8786876 AAAACCCAAAACCATAAACAC
1 TAAACCCAAAACCAAAAACAC
8786897 TAAACC
1 TAAACC
8786903 ATAAACCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.58, C:0.35, G:0.00, T:0.06
Consensus pattern (21 bp):
TAAACCCAAAACCAAAAACAC
Found at i:8786926 original size:27 final size:27
Alignment explanation
Indices: 8786890--8786975 Score: 104
Period size: 27 Copynumber: 3.1 Consensus size: 27
8786880 CCCAAAACCA
8786890 TAAACACTAAACCATAAACCTACACTC
1 TAAACACTAAACCATAAACCTACACTC
* *
8786917 TAAACACTAAATCATAAACCTTA-AATC
1 TAAACACTAAACCATAAACC-TACACTC
*
8786944 TTAAAC-CTCAAACCATAAACCTACACCC
1 -TAAACACT-AAACCATAAACCTACACTC
8786972 TAAA
1 TAAA
8786976 TATATATTAT
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (27 bp):
TAAACACTAAACCATAAACCTACACTC
Found at i:8786941 original size:14 final size:14
Alignment explanation
Indices: 8786924--8786965 Score: 57
Period size: 14 Copynumber: 3.0 Consensus size: 14
8786914 CTCTAAACAC
8786924 TAAATCATAAACCT
1 TAAATCATAAACCT
*
8786938 TAAATCTTAAACCT
1 TAAATCATAAACCT
* *
8786952 CAAACCATAAACCT
1 TAAATCATAAACCT
8786966 ACACCCTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.48, C:0.26, G:0.00, T:0.26
Consensus pattern (14 bp):
TAAATCATAAACCT
Found at i:8787037 original size:13 final size:13
Alignment explanation
Indices: 8787021--8787074 Score: 63
Period size: 14 Copynumber: 4.0 Consensus size: 13
8787011 ATCTTAAATA
8787021 CTAAACCCTAAAC
1 CTAAACCCTAAAC
*
8787034 CTAAACCCCAAAC
1 CTAAACCCTAAAC
* *
8787047 CTCAAACTCTAAGC
1 CT-AAACCCTAAAC
8787061 CATAAACCCTAAAC
1 C-TAAACCCTAAAC
8787075 TCAAAACTCT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
13 14 0.42
14 18 0.55
15 1 0.03
ACGTcount: A:0.44, C:0.39, G:0.02, T:0.15
Consensus pattern (13 bp):
CTAAACCCTAAAC
Found at i:8787053 original size:27 final size:27
Alignment explanation
Indices: 8787023--8787079 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
8787013 CTTAAATACT
8787023 AAACCCTAAACC-TAAACCCCAAACCTC
1 AAACCCTAAACCATAAACCCCAAA-CTC
* * *
8787050 AAACTCTAAGCCATAAACCCTAAACTC
1 AAACCCTAAACCATAAACCCCAAACTC
8787077 AAA
1 AAA
8787080 ACTCTAATAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 16 0.62
28 10 0.38
ACGTcount: A:0.47, C:0.37, G:0.02, T:0.14
Consensus pattern (27 bp):
AAACCCTAAACCATAAACCCCAAACTC
Found at i:8787319 original size:40 final size:40
Alignment explanation
Indices: 8787265--8787343 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 40
8787255 CAACTTTTTT
* * ** *
8787265 GCGGCGTTTTTCAAAAAGTGCCACTAATGCTTGATCTATA
1 GCGGCATTTCTCAAAAAGCACCACTAATGCTCGATCTATA
* *
8787305 GCGGCATTTCTCAAAATGCACCACTAATTCTCGATCTAT
1 GCGGCATTTCTCAAAAAGCACCACTAATGCTCGATCTAT
8787344 TGTGACATTT
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (40 bp):
GCGGCATTTCTCAAAAAGCACCACTAATGCTCGATCTATA
Found at i:8787454 original size:153 final size:152
Alignment explanation
Indices: 8787191--8787679 Score: 539
Period size: 153 Copynumber: 3.2 Consensus size: 152
8787181 ATTTTTTTTA
* * * *
8787191 CGACATTTGTTAAAAAGCACCGCTAATGCCAATAAAACTCAGCAAAAAACGACGTCGTTTTGCTC
1 CGACATTTGTTAAAAAGCGCCGCTAATGCCACTAAAGCT-A--AAAAAACGACGTTGTTTTGCTC
* * *
8787256 AACTTTTTTGCGGCGTTTTTCAAAAAGTGCCACTAATGCTTGATCTATAGCGGCATTTCTCAAAA
63 AACTTTTTTGCGGCGTTTTCCAAAAAGCGCCGCTAATGCTTGATCTATAGCGGCATTTCTCAAAA
*
8787321 TGCACCACTAATTCTCGATCTATTG
128 AGCACCACTAATTCTCGATCTATTG
* *** *
8787346 TGACATTTGTTAAAAAGCGCTATTAATGCCACTAAAGCTAAAAAAACGAAGTTGTTTTGCTCAAT
1 CGACATTTGTTAAAAAGCGCCGCTAATGCCACTAAAGCTAAAAAAACGACGTTGTTTTGCTCAA-
* * * * * *
8787411 TTTTTTTACGTCGTGTTCCAAAAAGCGCCGCTAATGCTTGATCTATAGTGGCGTTTCTCAAAAAG
65 CTTTTTTGCGGCGTTTTCCAAAAAGCGCCGCTAATGCTTGATCTATAGCGGCATTTCTCAAAAAG
** *
8787476 TGCCGCTAATTCTCGATCTATTG
130 CACCACTAATTCTCGATCTATTG
* * * * * *
8787499 CGGCGTTTGTTAAAATGCGCCGCTAATGCAACTAAAGCTAAAAAAAGGACTTTGTTTTGCTCAAC
1 CGACATTTGTTAAAAAGCGCCGCTAATGCCACTAAAGCTAAAAAAACGACGTTGTTTTGCTCAAC
* * * * * ** *
8787564 TTTTTTGCGGCATTTTCCAAAAAACACCGCTAATGCTTGATCTATAACTGTGTTAT-TCAGAAAG
66 TTTTTTGCGGCGTTTTCCAAAAAGCGCCGCTAATGCTTGATCTATAGCGGCATT-TCTCAAAAAG
* *
8787628 CACCGCTAATGCTCGATCTATTG
130 CACCACTAATTCTCGATCTATTG
* * * **
8787651 CGGCGTTTGTGAAAAAGTTCCGCTAATGC
1 CGACATTTGTTAAAAAGCGCCGCTAATGC
8787680 TCGATCTATT
Statistics
Matches: 280, Mismatches: 52, Indels: 7
0.83 0.15 0.02
Matches are distributed among these distances:
152 118 0.42
153 129 0.46
154 1 0.00
155 32 0.11
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (152 bp):
CGACATTTGTTAAAAAGCGCCGCTAATGCCACTAAAGCTAAAAAAACGACGTTGTTTTGCTCAAC
TTTTTTGCGGCGTTTTCCAAAAAGCGCCGCTAATGCTTGATCTATAGCGGCATTTCTCAAAAAGC
ACCACTAATTCTCGATCTATTG
Found at i:8787473 original size:40 final size:40
Alignment explanation
Indices: 8787429--8787527 Score: 126
Period size: 40 Copynumber: 2.5 Consensus size: 40
8787419 CGTCGTGTTC
* *
8787429 CAAAAAGCGCCGCTAATGCTTGATCTATAGTGGCGTTTCT
1 CAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTCT
* * * *
8787469 CAAAAAGTGCCGCTAATTCTCGATCTATTGCGGCGTTTGT
1 CAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTCT
* *
8787509 TAAAATGCGCCGCTAATGC
1 CAAAAAGCGCCGCTAATGC
8787528 AACTAAAGCT
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 49 1.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.29
Consensus pattern (40 bp):
CAAAAAGCGCCGCTAATGCTCGATCTATAGCGGCGTTTCT
Found at i:8787714 original size:40 final size:40
Alignment explanation
Indices: 8787624--8787719 Score: 156
Period size: 40 Copynumber: 2.4 Consensus size: 40
8787614 TGTTATTCAG
8787624 AAAGCACCGCTAATGCTCGATCTATTGCGGCGTTTGTGAA
1 AAAGCACCGCTAATGCTCGATCTATTGCGGCGTTTGTGAA
**
8787664 AAAGTTCCGCTAATGCTCGATCTATTGCGGCGTTTGTGAA
1 AAAGCACCGCTAATGCTCGATCTATTGCGGCGTTTGTGAA
* *
8787704 AAAGCGCCGCTGATGC
1 AAAGCACCGCTAATGC
8787720 CAATAAAGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 51 1.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
AAAGCACCGCTAATGCTCGATCTATTGCGGCGTTTGTGAA
Found at i:8787887 original size:195 final size:192
Alignment explanation
Indices: 8787461--8787893 Score: 460
Period size: 195 Copynumber: 2.2 Consensus size: 192
8787451 ATCTATAGTG
* * * * *
8787461 GCGTTTCTCAAAAAGTGCCGCTAATTCTCGATCTATTGCGGCGTTTGTTAAAATGCGCCGCTAAT
1 GCGTTTGTGAAAAAGTGCCGCTAATGCTCGATCTATTGCGGCGTTTGTGAAAAAGCGCCGCTAAT
* ** *
8787526 GCAACTAAAGCTAAAAAAAGGACTTTGTTTTGCTCAACTTTTTTGCGGCATTTTCCAAAAAACAC
66 GCAACTAAAGCTAAAAAAACGAAGTCGTTTTGCTCAACTTTTTTGCGGCATTTTCCAAAAAACAC
* * * * *
8787591 CGCTAATGCTTGATCTATAACTGTGTTATTCAGAAAGCACCGCTAATGCTCGATCTATTGCG
131 CGCTAATGCTTGATCGATAACGGTGTTATTCAGAAAGCACCACTAATGCTCGACCTATTGCA
* *
8787653 GCGTTTGTGAAAAAGTTCCGCTAATGCTCGATCTATTGCGGCGTTTGTGAAAAAGCGCCGCTGAT
1 GCGTTTGTGAAAAAGTGCCGCTAATGCTCGATCTATTGCGGCGTTTGTGAAAAAGCGCCGCTAAT
* * ***
8787718 GCCAA-TAAAGCTCACCAATAAACGAAGTCGTTTTGCTCAACTTTTTTTGCGGCATTTTTCGGGA
66 G-CAACTAAAGCT-A--AAAAAACGAAGTCGTTTTGCTCAAC-TTTTTTGCGGCATTTTCCAAAA
* * * * * * * * *
8787782 AGCGCTGGTAATGCTTTATCGATAGCGGTGTT-TCTCA-AATAGCACTACTATTGCT-TACCTAT
126 AACACCGCTAATGCTTGATCGATAACGGTGTTAT-TCAGAA-AGCACCACTAATGCTCGACCTAT
8787844 TGCA
189 TGCA
* * * * *
8787848 GTGTTTGTTAAAAAGCGCCGCTAATGCTTGATTTATTGCGGCGTTT
1 GCGTTTGTGAAAAAGTGCCGCTAATGCTCGATCTATTGCGGCGTTT
8787894 TTTGTTCAAA
Statistics
Matches: 198, Mismatches: 36, Indels: 11
0.81 0.15 0.04
Matches are distributed among these distances:
192 66 0.33
193 4 0.02
195 71 0.36
196 57 0.29
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (192 bp):
GCGTTTGTGAAAAAGTGCCGCTAATGCTCGATCTATTGCGGCGTTTGTGAAAAAGCGCCGCTAAT
GCAACTAAAGCTAAAAAAACGAAGTCGTTTTGCTCAACTTTTTTGCGGCATTTTCCAAAAAACAC
CGCTAATGCTTGATCGATAACGGTGTTATTCAGAAAGCACCACTAATGCTCGACCTATTGCA
Found at i:8792250 original size:126 final size:125
Alignment explanation
Indices: 8791991--8792557 Score: 733
Period size: 126 Copynumber: 4.5 Consensus size: 125
8791981 CATAAAATCA
* * * * *
8791991 AAGCAGGATGATTTATGAGAAGGATTTTTGAAGTCGCGCCCACGTGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
** * ** *
8792056 AGGTATTGGAAAAATAATTTTGACTTGATATTTCTGAGCAAATAGTTTAAAAAACGCTTC
66 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * *
8792116 AAGCAGGATGCTTTGTGAGAAGAATTTGTGAAATCGCGCCCCCGTGGACGCGCTTTTACTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * *
8792181 TGGTCCTGGAAGAAATAATTTCGAGTTAACGTTTTTGAGCAAATAGTTTAAAAAACGCTTC
66 AGGTCCTGGAA-AAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * * *
8792242 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTCGGGCCCACGTGGACGTGCTTTTGCTATAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * *
8792307 AGTTCCTGAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTGC
66 AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAA-AACGCTTC
* * **
8792368 AAGCAGCATGCTATT-TGAAAAGAATTTGTGAAATCGCGCCTTCGTGGACGCGCTTTTGCTACAG
1 AAGCAGGATGCT-TTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAG
* **
8792432 TTGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTAT-AAAATTGCTTC
65 TAGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
* * * *
8792492 TAGCAGGATGCTTTATGAAAAGAATTTGTGAAATTGCACCCACGTGGACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
8792557 A
66 A
8792558 ACATGTTTGG
Statistics
Matches: 381, Mismatches: 57, Indels: 9
0.85 0.13 0.02
Matches are distributed among these distances:
123 2 0.01
124 61 0.16
125 105 0.28
126 211 0.55
127 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.30
Consensus pattern (125 bp):
AAGCAGGATGCTTTATGAGAAGAATTTGTGAAATCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTCCTGGAAAAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAAAACGCTTC
Found at i:8792450 original size:251 final size:250
Alignment explanation
Indices: 8791991--8792557 Score: 789
Period size: 251 Copynumber: 2.3 Consensus size: 250
8791981 CATAAAATCA
* * * * *
8791991 AAGCAGGATGATTTATGAGAAGGATTTTTGAAGTCGCGCCCACGTGTACGCGCTTTTGCTACAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * * *
8792056 AGGTATTGGAAAAATAATTTTGACTTGATATTTCTGAGCAAATAGTTTAAAAAACGCTTCAAGCA
66 AGGTACTGAAAAAATAATTTTGACTTGACATTTCTGAGCAAATAGTATAAAAAACGCTGCAAGCA
* *
8792121 GGATGCTTTGTGAGAAGAATTTGTGAAATCGCGCCCCCGTGGACGCGCTTTTACTACAGTTGGTC
131 GCATGCTTTGTGAAAAGAATTTGTGAAATCGCGCCCCCGTGGACGCGCTTTTACTACAGTTGGTC
* * *
8792186 CTGGAAGAAATAATTTCGAGTTAACGTTTTTGAGCAAATAGTTTAAAAAACGCTTC
196 CTGGAAGAAATAATTTCGACTTAACGTTTCTGAGCAAATAGTAT-AAAAACGCTTC
* * *
8792242 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTCGGGCCCACGTGGACGTGCTTTTGCTATAGT
1 AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTCGCGCCCACGTGGACGCGCTTTTGCTACAGT
* * * *
8792307 AGTTCCTGAAAAAATAATTTTGAGTTGACGTTTCTGAGCAAATAGTATAAAACAACGCTGCAAGC
66 AGGTACTGAAAAAATAATTTTGACTTGACATTTCTGAGCAAATAGTATAAAA-AACGCTGCAAGC
** *
8792372 AGCATGCTATT-TGAAAAGAATTTGTGAAATCGCGCCTTCGTGGACGCGCTTTTGCTACAGTTGG
130 AGCATGCT-TTGTGAAAAGAATTTGTGAAATCGCGCCCCCGTGGACGCGCTTTTACTACAGTTGG
* **
8792436 TCCTGGAA-AAATAATTTCGACTTGACGTTTCTGAGCAAATAGTATAAAATTGCTTC
194 TCCTGGAAGAAATAATTTCGACTTAACGTTTCTGAGCAAATAGTATAAAAACGCTTC
* * * *
8792492 TAGCAGGATGCTTTATGAA-AAGAATTTGTGAAATTGCACCCACGTGGACGCGCTTTTGCTACAG
1 AAGCAGGATGCTTTAT-AAGAAGAATTTGTGAAGTCGCGCCCACGTGGACGCGCTTTTGCTACAG
8792556 TA
65 TA
8792558 ACATGTTTGG
Statistics
Matches: 278, Mismatches: 35, Indels: 7
0.87 0.11 0.02
Matches are distributed among these distances:
250 65 0.23
251 136 0.49
252 75 0.27
253 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.23, T:0.30
Consensus pattern (250 bp):
AAGCAGGATGCTTTATAAGAAGAATTTGTGAAGTCGCGCCCACGTGGACGCGCTTTTGCTACAGT
AGGTACTGAAAAAATAATTTTGACTTGACATTTCTGAGCAAATAGTATAAAAAACGCTGCAAGCA
GCATGCTTTGTGAAAAGAATTTGTGAAATCGCGCCCCCGTGGACGCGCTTTTACTACAGTTGGTC
CTGGAAGAAATAATTTCGACTTAACGTTTCTGAGCAAATAGTATAAAAACGCTTC
Found at i:8795775 original size:21 final size:21
Alignment explanation
Indices: 8795732--8797030 Score: 799
Period size: 21 Copynumber: 61.1 Consensus size: 21
8795722 TCAAATTATA
8795732 TTTAAGTTAAGGG-TTAGGGT
1 TTTAAGTTAAGGGTTTAGGGT
*
8795752 TTTAAGTTAAGGGTTTAAGGT
1 TTTAAGTTAAGGGTTTAGGGT
* *
8795773 TTTAAAGTTAAGGGTCTAAGG-
1 TTT-AAGTTAAGGGTTTAGGGT
*
8795794 TTT---TT-AGGGTTTATGGTT
1 TTTAAGTTAAGGGTTTA-GGGT
*
8795812 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGG-T
* *
8795833 TTTAGGTTAAGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTT-AGGGT
* *
8795855 TTTAATTTAAAGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGG-T
8795876 TTTAAGTTAAGGGTTTAGGGT
1 TTTAAGTTAAGGGTTTAGGGT
*
8795897 TTTAAAGTTAAAGGTTTAGGGT
1 TTT-AAGTTAAGGGTTTAGGGT
*
8795919 TTTAAAGTTAA-GGTTTATGGTT
1 TTT-AAGTTAAGGGTTTA-GGGT
*
8795941 TTTAGGTTAAGGG-TTAGGGT
1 TTTAAGTTAAGGGTTTAGGGT
** * **
8795961 TTTGGGTTTTAAGGTTTTATAGT
1 TTTAAG--TTAAGGGTTTAGGGT
* * *
8795984 TTTAGGGTTTTAGTGTTTAGGG-
1 TTTA-AG-TTAAGGGTTTAGGGT
*
8796006 TTTAA--T----GTTTAGGTT
1 TTTAAGTTAAGGGTTTAGGGT
* *
8796021 TTTAAATTTAAGGG-TTAGAGTT
1 TTT-AAGTTAAGGGTTTAG-GGT
* * *
8796043 TTTAGGTTAATGGTTTATGGTT
1 TTTAAGTTAAGGGTTTA-GGGT
* *
8796065 TTTAATTTAAGGG-TTATGGTT
1 TTTAAGTTAAGGGTTTA-GGGT
8796086 TTTAAGTTAAGGGTTTAGGGT
1 TTTAAGTTAAGGGTTTAGGGT
* * *
8796107 TTAAAAGTTAAGGGTCTATGGT
1 TT-TAAGTTAAGGGTTTAGGGT
*
8796129 TTTAAAGTTAA-TGTTTAGGGT
1 TTT-AAGTTAAGGGTTTAGGGT
*
8796150 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGG-T
* * *
8796171 TTTAGGTTAAGGGTTCAAGGT
1 TTTAAGTTAAGGGTTTAGGGT
* * *
8796192 TTAAAATTTAAAGG-TTAGGGTT
1 TT-TAAGTTAAGGGTTTAGGG-T
8796214 TTTAAGTTAAGGGTTTAGGGTT
1 TTTAAGTTAAGGGTTTAGGG-T
*
8796236 TTTAAGTTAAGGGTTTAGGAT
1 TTTAAGTTAAGGGTTTAGGGT
*
8796257 TTTAAAGTTAA-GGATTAGGGGT
1 TTT-AAGTTAAGGGTTTA-GGGT
* **
8796279 TTCAAGTTAAATG-TTAGGG-
1 TTTAAGTTAAGGGTTTAGGGT
*
8796298 TTT---TT-AGGGTTTAAGGTT
1 TTTAAGTTAAGGGTTT-AGGGT
*
8796316 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGG-T
* * *
8796337 TTTAGGTTAAGGGTCTATGGTT
1 TTTAAGTTAAGGGTTTA-GGGT
* * *
8796359 TTTAGGTTAAGGGTCTAGTGT
1 TTTAAGTTAAGGGTTTAGGGT
* **
8796380 TTTAAAGTTAA-TGTTTAAGTTT
1 TTT-AAGTTAAGGGTTT-AGGGT
* *
8796402 TTTAGGTTAAGGG-TTAAGG-
1 TTTAAGTTAAGGGTTTAGGGT
8796421 TTT---TT-AGGGTTTAGGGT
1 TTTAAGTTAAGGGTTTAGGGT
* *
8796438 TTTCAAGTTAAGGGTTAAGGTT
1 TTT-AAGTTAAGGGTTTAGGGT
* *
8796460 TTTAGGTTAAGGGTTTTGGGTT
1 TTTAAGTTAAGGGTTTAGGG-T
*
8796482 TTTAATTTAAGGG-TTAGGGT
1 TTTAAGTTAAGGGTTTAGGGT
8796502 TTTAAAGTTAAGGGTTTATGGGT
1 TTT-AAGTTAAGGGTTTA-GGGT
*
8796525 TTTAAGTTAAGGGTTTAAGGT
1 TTTAAGTTAAGGGTTTAGGGT
*
8796546 TTTAAAGTTAA-GGTTTAAGGT
1 TTT-AAGTTAAGGGTTTAGGGT
* *
8796567 TTTCAGGTTAAGGG-TTAGGATT
1 TTT-AAGTTAAGGGTTTAGG-GT
* *
8796589 TTTAGGTTAAGGGTTTAGTGTT
1 TTTAAGTTAAGGGTTTAG-GGT
*
8796611 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGG-T
* *
8796632 TTTAATTTAAGGATTTAGGGT
1 TTTAAGTTAAGGGTTTAGGGT
* *
8796653 TTTAGGTTAAGAGTTTAGGGT
1 TTTAAGTTAAGGGTTTAGGGT
8796674 TTTCAAGTTAAGGG-TTAGGGTT
1 TTT-AAGTTAAGGGTTTAGGG-T
* *
8796696 TTTAAGTTAAGGATTTATGGTT
1 TTTAAGTTAAGGGTTTA-GGGT
* *
8796718 TTTAA--TAAGAG-TTAGAGTT
1 TTTAAGTTAAGGGTTTAG-GGT
*
8796737 TTTAATTTAAGGGTTTAGGGTTT
1 TTTAAGTTAAGGGTTTAGGG--T
*
8796760 TTTAGGTTAAGGG-TTAGGGTT
1 TTTAAGTTAAGGGTTTAGGG-T
*
8796781 TTTAGGTTAAGGGTTTAGGGATT
1 TTTAAGTTAAGGGTTTAGGG--T
* *
8796804 TTTAGGTTAAGAGTTTAGGGT
1 TTTAAGTTAAGGGTTTAGGGT
* * *
8796825 TTAAAGTTAAAGTTAAAGTTTATGGTT
1 TTTAAGTT-AAG----GGTTTA-GGGT
*
8796852 TTTAGGTTAAGGG-TTAGGGT
1 TTTAAGTTAAGGGTTTAGGGT
*
8796872 TTTAAAGTTAATGG-TTAGGGTT
1 TTT-AAGTTAAGGGTTTAGGG-T
* *
8796894 TTTAGGTTAATAGTTTAGGGTTAGGGT
1 TTTAAGTT-A-AG----GGTTTAGGGT
*
8796921 TGTAAGGTTAAGGGTTTAGGGT
1 TTTAA-GTTAAGGGTTTAGGGT
8796943 TTTAAAGTTAAGGG-TTAGGGTT
1 TTT-AAGTTAAGGGTTTAGGG-T
* *
8796965 TTTAGGTTAAGGGGTTAGGGGT
1 TTTAAGTTAAGGGTTTA-GGGT
*
8796987 TTTAAGTTAAGGG-TTAGAGTT
1 TTTAAGTTAAGGGTTTAG-GGT
* *
8797008 TTTAGGTTAAGGGTTTAAGGT
1 TTTAAGTTAAGGGTTTAGGGT
8797029 TT
1 TT
8797031 GTTAATTAAA
Statistics
Matches: 1035, Mismatches: 136, Indels: 215
0.75 0.10 0.16
Matches are distributed among these distances:
14 7 0.01
15 9 0.01
16 20 0.02
17 9 0.01
18 9 0.01
19 16 0.02
20 61 0.06
21 397 0.38
22 396 0.38
23 73 0.07
24 2 0.00
26 11 0.01
27 16 0.02
28 9 0.01
ACGTcount: A:0.24, C:0.01, G:0.30, T:0.45
Consensus pattern (21 bp):
TTTAAGTTAAGGGTTTAGGGT
Found at i:8795812 original size:38 final size:37
Alignment explanation
Indices: 8795761--8795850 Score: 112
Period size: 38 Copynumber: 2.5 Consensus size: 37
8795751 TTTTAAGTTA
8795761 AGGGTTTAAGGTTTTAAAGTTAAGGGTCTAAGGTTTTT
1 AGGGTTTAAGGTTTTAAAGTTAAGGGT-TAAGGTTTTT
* * * *
8795799 AGGGTTTATGGTTTTTAGGTTAAGGGTTAGGGTTTTT
1 AGGGTTTAAGGTTTTAAAGTTAAGGGTTAAGGTTTTT
*
8795836 A-GG-TTAAGGGTTTAA
1 AGGGTTTAAGGTTTTAA
8795851 GGTTTTTAAT
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
35 9 0.20
36 2 0.04
37 10 0.22
38 24 0.53
ACGTcount: A:0.23, C:0.01, G:0.32, T:0.43
Consensus pattern (37 bp):
AGGGTTTAAGGTTTTAAAGTTAAGGGTTAAGGTTTTT
Found at i:8795855 original size:43 final size:43
Alignment explanation
Indices: 8795799--8797039 Score: 890
Period size: 43 Copynumber: 29.0 Consensus size: 43
8795789 TAAGGTTTTT
* * *
8795799 AGGGTTTATGGTTTTTAGGTTAAGGGTTAGGGTTTTTAGGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
* *
8795842 AGGGTTTAAGGTTTTTAATTTAAAGGTTAGGGTTTTTAAGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
* * * *
8795885 AGGGTTTAGGGTTTTAAAGTTAAAGGTTTAGGGTTTTAAAGTTA
1 AGGGTTTAAGGTTTTTAAGTT-AAGGGTTAGGGTTTTTAAGTTA
* *
8795929 A-GGTTTATGGTTTTTAGGTTAAGGGTTAGGG-TTTT--G---
1 AGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
* * *** * *
8795965 -GGTTTTAAGG-TTTTATAGTTTTAGGGTTTTAGTGTTTAGGGTTTA
1 AGGGTTTAAGGTTTTTA-AG-TTAAGGGTTAGGGTTTTTA-AG-TTA
* * * *
8796010 A-TGTTT-AGGTTTTTAAATTTAAGGGTTAGAGTTTTTAGGTTA
1 AGGGTTTAAGGTTTTT-AAGTTAAGGGTTAGGGTTTTTAAGTTA
* * * *
8796052 ATGGTTTATGGTTTTTAATTTAAGGGTTATGGTTTTTAAGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
* ** * *
8796095 AGGGTTTAGGGTTTAAAAGTTAAGGGTCTATGGTTTTAAAGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAGGGT-TAGGGTTTTTAAGTTA
* * * *
8796139 A-TGTTT-AGGGTTTTAGGTTAAGGGTTAGGGTTTTTAGGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
* ** * *
8796180 AGGGTTCAAGGTTTAAAATTTAAAGGTTAGGGTTTTTAAGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
* * *
8796223 AGGGTTTAGGGTTTTTAAGTTAAGGGTTTAGGATTTTAAAGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTA
* * * * **
8796267 A-GGATTAGGGGTTTCAAGTTAAATGTTAGGG--TTT---TT-
1 AGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
* *
8796303 AGGGTTTAAGGTTTTTAGGTTAAGGGTTAGGGTTTTTAGGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
* * * * *
8796346 AGGGTCTATGGTTTTTAGGTTAAGGGTCTAGTGTTTTAAAGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAGGGT-TAGGGTTTTTAAGTTA
* * * *
8796390 A-TGTTTAAGTTTTTTAGGTTAAGGGTTAAGG--TTT---TT-
1 AGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
* * * *
8796426 AGGGTTTAGGGTTTTCAAGTTAAGGGTTAAGGTTTTTAGGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
** * *
8796469 AGGGTTTTGGGTTTTTAATTTAAGGGTTAGGGTTTTAAAGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
* * * *
8796512 AGGGTTTATGGGTTTTAAGTTAAGGGTTTAAGGTTTTAAAGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAGGG-TTAGGGTTTTTAAGTTA
* * * *
8796556 A-GGTTTAAGGTTTTCAGGTTAAGGGTTAGGATTTTTAGGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
* *
8796598 AGGGTTT-AGTGTTTTTAGGTTAAGGGTTAGGGTTTTTAATTTA
1 AGGGTTTAAG-GTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
* * * * *
8796641 AGGATTT-AGGGTTTTAGGTTAAGAGTTTAGGGTTTTCAAGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAG-GGTTAGGGTTTTTAAGTTA
* * *
8796684 AGGG-TTAGGGTTTTTAAGTTAAGGATTTATGGTTTTTAA--TA
1 AGGGTTTAAGGTTTTTAAGTTAAGG-GTTAGGGTTTTTAAGTTA
* * *
8796725 AGAG-TT-AGAGTTTTTAATTTAAGGGTTTAGGGTTTTTTAGGTTA
1 AGGGTTTAAG-GTTTTTAAGTTAAGGG-TTAGGG-TTTTTAAGTTA
* * *
8796769 AGGG-TTAGGGTTTTTAGGTTAAGGGTTTAGGGATTTTTAGGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAGGG-TTAGGG-TTTTTAAGTTA
* * * * * *
8796813 AGAGTTTAGGGTTTAAAGTTAAAGTTAAAGTTTATGGTTTTTAGGTTA
1 AGGGTTTAAGGTTT----TT-AAGTTAAGGGTTAGGGTTTTTAAGTTA
* * * *
8796861 AGGG-TTAGGGTTTTAAAGTTAATGGTTAGGGTTTTTAGGTTA
1 AGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
** * *
8796903 ATAGTTTAGGGTTAGGGTTGTAAGGTTAAGGGTTTAGGGTTTTAAAGTTA
1 AGGGTTTAAGGTT----TT-TAA-GTTAAGGG-TTAGGGTTTTTAAGTTA
* * *
8796953 AGGG-TTAGGGTTTTTAGGTTAAGGGGTTAGGGGTTTTAAGTTA
1 AGGGTTTAAGGTTTTTAAGTTAA-GGGTTAGGGTTTTTAAGTTA
* *
8796996 AGGG-TT-AGAGTTTTTAGGTTAAGGGTTTAAGGTTTGTTAA-TTA
1 AGGGTTTAAG-GTTTTTAAGTTAAGGG-TTAGGGTTT-TTAAGTTA
8797039 A
1 A
8797040 ATTATGCATT
Statistics
Matches: 964, Mismatches: 168, Indels: 132
0.76 0.13 0.10
Matches are distributed among these distances:
35 5 0.01
36 10 0.01
37 61 0.06
38 3 0.00
39 7 0.01
40 5 0.01
41 44 0.05
42 111 0.12
43 465 0.48
44 159 0.16
45 20 0.02
46 1 0.00
47 11 0.01
48 16 0.02
49 22 0.02
50 24 0.02
ACGTcount: A:0.24, C:0.01, G:0.30, T:0.45
Consensus pattern (43 bp):
AGGGTTTAAGGTTTTTAAGTTAAGGGTTAGGGTTTTTAAGTTA
Found at i:8795996 original size:8 final size:8
Alignment explanation
Indices: 8795954--8796008 Score: 60
Period size: 8 Copynumber: 7.1 Consensus size: 8
8795944 AGGTTAAGGG
8795954 TTAGGGTT
1 TTAGGGTT
8795962 TT-GGGTT
1 TTAGGGTT
*
8795969 TTAAGGTT
1 TTAGGGTT
**
8795977 TTATAGTT
1 TTAGGGTT
8795985 TTAGGGTT
1 TTAGGGTT
*
8795993 TTAGTG-T
1 TTAGGGTT
8796000 TTAGGGTT
1 TTAGGGTT
8796008 T
1 T
8796009 AATGTTTAGG
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
7 13 0.34
8 25 0.66
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.55
Consensus pattern (8 bp):
TTAGGGTT
Found at i:8796004 original size:15 final size:16
Alignment explanation
Indices: 8795954--8796008 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
8795944 AGGTTAAGGG
*
8795954 TTAGGGTTTT-GGGTT
1 TTAGGGTTTTAGTGTT
*
8795969 TTAAGGTTTTA-TAGTT
1 TTAGGGTTTTAGT-GTT
8795985 TTAGGGTTTTAGTG-T
1 TTAGGGTTTTAGTGTT
8796000 TTAGGGTTT
1 TTAGGGTTT
8796009 AATGTTTAGG
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
15 19 0.56
16 14 0.41
17 1 0.03
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.55
Consensus pattern (16 bp):
TTAGGGTTTTAGTGTT
Found at i:8796009 original size:14 final size:15
Alignment explanation
Indices: 8795954--8796024 Score: 58
Period size: 15 Copynumber: 4.7 Consensus size: 15
8795944 AGGTTAAGGG
*
8795954 TTAGGGTTTT-GGGTT
1 TTAGGGTTTTAGTG-T
*
8795969 TTAAGGTTTTA-TAGTT
1 TTAGGGTTTTAGT-G-T
8795985 TTAGGGTTTTAGTGT
1 TTAGGGTTTTAGTGT
*
8796000 TTAGGG-TTTAATGT
1 TTAGGGTTTTAGTGT
*
8796014 TTAGGTTTTTA
1 TTAGGGTTTTA
8796025 AATTTAAGGG
Statistics
Matches: 47, Mismatches: 5, Indels: 8
0.78 0.08 0.13
Matches are distributed among these distances:
14 12 0.26
15 20 0.43
16 14 0.30
17 1 0.02
ACGTcount: A:0.17, C:0.00, G:0.28, T:0.55
Consensus pattern (15 bp):
TTAGGGTTTTAGTGT
Found at i:8796025 original size:15 final size:14
Alignment explanation
Indices: 8795984--8796022 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
8795974 GTTTTATAGT
*
8795984 TTTAGGGTTTTAGTG
1 TTTA-GGTTTTAATG
*
8795999 TTTAGGGTTTAATG
1 TTTAGGTTTTAATG
8796013 TTTAGGTTTT
1 TTTAGGTTTT
8796023 TAAATTTAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
14 17 0.81
15 4 0.19
ACGTcount: A:0.15, C:0.00, G:0.28, T:0.56
Consensus pattern (14 bp):
TTTAGGTTTTAATG
Found at i:8796448 original size:37 final size:36
Alignment explanation
Indices: 8796407--8796476 Score: 122
Period size: 37 Copynumber: 1.9 Consensus size: 36
8796397 AGTTTTTTAG
*
8796407 GTTAAGGGTTAAGGTTTTTAGGGTTTAGGGTTTTCAA
1 GTTAAGGGTTAAGGTTTTTA-GGTTAAGGGTTTTCAA
8796444 GTTAAGGGTTAAGGTTTTTAGGTTAAGGGTTTT
1 GTTAAGGGTTAAGGTTTTTAGGTTAAGGGTTTT
8796477 GGGTTTTTAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 12 0.38
37 20 0.62
ACGTcount: A:0.21, C:0.01, G:0.33, T:0.44
Consensus pattern (36 bp):
GTTAAGGGTTAAGGTTTTTAGGTTAAGGGTTTTCAA
Found at i:8796908 original size:28 final size:27
Alignment explanation
Indices: 8796873--8796931 Score: 73
Period size: 28 Copynumber: 2.1 Consensus size: 27
8796863 GGTTAGGGTT
* * *
8796873 TTAAAGTTAATGGTTAGGGTTTTTAGG
1 TTAAAGTTAAGGGTTAGGGTTGTAAGG
*
8796900 TTAATAGTTTAGGGTTAGGGTTGTAAGG
1 TTAA-AGTTAAGGGTTAGGGTTGTAAGG
8796928 TTAA
1 TTAA
8796932 GGGTTTAGGG
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
27 4 0.15
28 23 0.85
ACGTcount: A:0.27, C:0.00, G:0.31, T:0.42
Consensus pattern (27 bp):
TTAAAGTTAAGGGTTAGGGTTGTAAGG
Found at i:8796937 original size:28 final size:28
Alignment explanation
Indices: 8796884--8796943 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
8796874 TAAAGTTAAT
* * *
8796884 GGTTAGGGTTTTTAGGTTAATAGTTTAG
1 GGTTAGGGTTGTAAGGTTAAGAGTTTAG
*
8796912 GGTTAGGGTTGTAAGGTTAAGGGTTTAG
1 GGTTAGGGTTGTAAGGTTAAGAGTTTAG
8796940 GGTT
1 GGTT
8796944 TTAAAGTTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.20, C:0.00, G:0.38, T:0.42
Consensus pattern (28 bp):
GGTTAGGGTTGTAAGGTTAAGAGTTTAG
Found at i:8797602 original size:18 final size:18
Alignment explanation
Indices: 8797576--8797618 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
8797566 GACTCGAAAA
* *
8797576 AGGAAACATATAAGGGTT
1 AGGAAACATAAAAGGGCT
*
8797594 AGGATACATAAAAGGGCT
1 AGGAAACATAAAAGGGCT
8797612 AGGAAAC
1 AGGAAAC
8797619 GCACCTGGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.47, C:0.09, G:0.28, T:0.16
Consensus pattern (18 bp):
AGGAAACATAAAAGGGCT
Found at i:8798245 original size:7 final size:7
Alignment explanation
Indices: 8798235--8798260 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
8798225 TTATATACAT
8798235 AATACTA
1 AATACTA
8798242 AATACTA
1 AATACTA
8798249 AATACTA
1 AATACTA
8798256 AATAC
1 AATAC
8798261 CAATTGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:8798466 original size:20 final size:20
Alignment explanation
Indices: 8798429--8798466 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
8798419 TTTATTTTTA
*
8798429 AAAATCTACATAATAATTGT
1 AAAATCTACATAAAAATTGT
8798449 AAAATCTA-ATATAAAATT
1 AAAATCTACATA-AAAATT
8798467 TACCTCGTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (20 bp):
AAAATCTACATAAAAATTGT
Found at i:8799458 original size:51 final size:51
Alignment explanation
Indices: 8799403--8799500 Score: 128
Period size: 51 Copynumber: 1.9 Consensus size: 51
8799393 AATTATTTAA
*
8799403 AAATAGGGATTT-ATGAGAAATTTA-AGAGGAACTTGAGAGCAAATTGAAAAT
1 AAATAGGGATTTGA-GAGAAATTTAGA-AGGAACTTGAAAGCAAATTGAAAAT
* * *
8799454 AAATATGGATTTGAGAGAAATTTTGAAGGAATTTGAAAGCAAATTGA
1 AAATAGGGATTTGAGAGAAATTTAGAAGGAACTTGAAAGCAAATTGA
8799501 GAGGAAATTT
Statistics
Matches: 41, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
51 39 0.95
52 2 0.05
ACGTcount: A:0.46, C:0.03, G:0.23, T:0.28
Consensus pattern (51 bp):
AAATAGGGATTTGAGAGAAATTTAGAAGGAACTTGAAAGCAAATTGAAAAT
Found at i:8799476 original size:11 final size:11
Alignment explanation
Indices: 8799462--8799538 Score: 54
Period size: 11 Copynumber: 6.9 Consensus size: 11
8799452 ATAAATATGG
8799462 ATTTGAGAGAA
1 ATTTGAGAGAA
*
8799473 ATTTTGA-AGGA
1 A-TTTGAGAGAA
*
8799484 ATTTGAAAGCAA
1 ATTTGAGAG-AA
8799496 A-TTGAGAGGAA
1 ATTTGAGA-GAA
8799507 ATTT-AGAAGAA
1 ATTTGAG-AGAA
*
8799518 A-TTGAGAGGGA
1 ATTTGAGA-GAA
8799529 ATTTGAGAGA
1 ATTTGAGAGA
8799539 GGATTAGTTT
Statistics
Matches: 52, Mismatches: 5, Indels: 18
0.69 0.07 0.24
Matches are distributed among these distances:
10 8 0.15
11 27 0.52
12 17 0.33
ACGTcount: A:0.44, C:0.01, G:0.29, T:0.26
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:8799509 original size:23 final size:22
Alignment explanation
Indices: 8799462--8799536 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 22
8799452 ATAAATATGG
8799462 ATTTGAG-AGAAATTTTGA-AGGA
1 ATTTGAGAAGAAA--TTGAGAGGA
8799484 ATTTGA-AAGCAAATTGAGAGGAA
1 ATTTGAGAAG-AAATTGAGAGG-A
8799507 ATTT-AGAAGAAATTGAGAGGGA
1 ATTTGAGAAGAAATTGAGA-GGA
8799529 ATTTGAGA
1 ATTTGAGA
8799537 GAGGATTAGT
Statistics
Matches: 46, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
21 4 0.09
22 26 0.57
23 16 0.35
ACGTcount: A:0.44, C:0.01, G:0.28, T:0.27
Consensus pattern (22 bp):
ATTTGAGAAGAAATTGAGAGGA
Found at i:8799535 original size:34 final size:34
Alignment explanation
Indices: 8799462--8799537 Score: 84
Period size: 34 Copynumber: 2.3 Consensus size: 34
8799452 ATAAATATGG
* *
8799462 ATTTGAGA-GAAATTTTGAAGGAATTTGAAAGCA
1 ATTTGAGAGGAAATTTAGAAGGAAATTGAAAGCA
* * *
8799495 AATTGAGAGGAAATTTAGAA-GAAATTGAGAGGGA
1 ATTTGAGAGGAAATTTAGAAGGAAATTGA-AAGCA
8799529 ATTTGAGAG
1 ATTTGAGAG
8799538 AGGATTAGTT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
33 14 0.40
34 21 0.60
ACGTcount: A:0.43, C:0.01, G:0.29, T:0.26
Consensus pattern (34 bp):
ATTTGAGAGGAAATTTAGAAGGAAATTGAAAGCA
Found at i:8818575 original size:49 final size:49
Alignment explanation
Indices: 8818491--8818625 Score: 245
Period size: 49 Copynumber: 2.8 Consensus size: 49
8818481 CTTAAAAATG
* *
8818491 CCTAAGTCAGCCTAA-CTCGCAATGATAAAGGATTCAAAAGTAAAAACA
1 CCTAAGTCAACCTAATCTCGCAACGATAAAGGATTCAAAAGTAAAAACA
8818539 CCTAAGTCAACCTAATCTCGCAACGATAAAGGATTCAAAAGTAAAAACA
1 CCTAAGTCAACCTAATCTCGCAACGATAAAGGATTCAAAAGTAAAAACA
8818588 CCTAAGTCAACCTAATCTCGCAACGATAAAGGATTCAA
1 CCTAAGTCAACCTAATCTCGCAACGATAAAGGATTCAA
8818626 TAGAATTCCC
Statistics
Matches: 84, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
48 14 0.17
49 70 0.83
ACGTcount: A:0.44, C:0.23, G:0.13, T:0.19
Consensus pattern (49 bp):
CCTAAGTCAACCTAATCTCGCAACGATAAAGGATTCAAAAGTAAAAACA
Found at i:8818901 original size:22 final size:22
Alignment explanation
Indices: 8818876--8818939 Score: 59
Period size: 22 Copynumber: 3.1 Consensus size: 22
8818866 AGCTGTATAC
8818876 AATTAGAACTCTAAGATTACAT
1 AATTAGAACTCTAAGATTACAT
* *
8818898 AATTAAAAGT-T--G-TATAC--
1 AATTAGAACTCTAAGAT-TACAT
8818915 AATTAGAACTCTAAGATTACAT
1 AATTAGAACTCTAAGATTACAT
8818937 AAT
1 AAT
8818940 CATATCTTCT
Statistics
Matches: 31, Mismatches: 4, Indels: 14
0.63 0.08 0.29
Matches are distributed among these distances:
17 8 0.26
18 2 0.06
19 4 0.13
20 4 0.13
21 2 0.06
22 11 0.35
ACGTcount: A:0.47, C:0.11, G:0.09, T:0.33
Consensus pattern (22 bp):
AATTAGAACTCTAAGATTACAT
Found at i:8818902 original size:39 final size:39
Alignment explanation
Indices: 8818859--8818939 Score: 153
Period size: 39 Copynumber: 2.1 Consensus size: 39
8818849 CAATGGCTAC
8818859 AATTAAAAGCTGTATACAATTAGAACTCTAAGATTACAT
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGATTACAT
*
8818898 AATTAAAAGTTGTATACAATTAGAACTCTAAGATTACAT
1 AATTAAAAGCTGTATACAATTAGAACTCTAAGATTACAT
8818937 AAT
1 AAT
8818940 CATATCTTCT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.47, C:0.11, G:0.10, T:0.32
Consensus pattern (39 bp):
AATTAAAAGCTGTATACAATTAGAACTCTAAGATTACAT
Found at i:8824026 original size:17 final size:17
Alignment explanation
Indices: 8824004--8824067 Score: 56
Period size: 17 Copynumber: 3.5 Consensus size: 17
8823994 CATCAATGGC
8824004 TACAATTAAAAGCTGTA
1 TACAATTAAAAGCTGTA
**
8824021 TACAATTAGAACTCTAAGATTA
1 TACAATTA-AAAGCT--G--TA
*
8824043 CACAATTAAAAGCTGTA
1 TACAATTAAAAGCTGTA
8824060 TACAATTA
1 TACAATTA
8824068 GAACTCTAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 10
0.69 0.12 0.19
Matches are distributed among these distances:
17 17 0.47
18 4 0.11
19 1 0.03
20 1 0.03
21 4 0.11
22 9 0.25
ACGTcount: A:0.47, C:0.14, G:0.09, T:0.30
Consensus pattern (17 bp):
TACAATTAAAAGCTGTA
Found at i:8824048 original size:39 final size:39
Alignment explanation
Indices: 8824005--8824083 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
8823995 ATCAATGGCT
8824005 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGATTAC
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGATTAC
8824044 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGATTAC
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGATTAC
8824083 A
1 A
8824084 TAATCATATC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.47, C:0.15, G:0.10, T:0.28
Consensus pattern (39 bp):
ACAATTAAAAGCTGTATACAATTAGAACTCTAAGATTAC
Found at i:8825334 original size:13 final size:13
Alignment explanation
Indices: 8825316--8825341 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8825306 ATAATATATT
8825316 TATTAATTAAAAA
1 TATTAATTAAAAA
8825329 TATTAATTAAAAA
1 TATTAATTAAAAA
8825342 AAGCTTGAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (13 bp):
TATTAATTAAAAA
Found at i:8828472 original size:3 final size:3
Alignment explanation
Indices: 8828452--8828528 Score: 86
Period size: 3 Copynumber: 26.3 Consensus size: 3
8828442 TTTAGGGTTT
* * *
8828452 AAG AAG -AG AAA AAT AAG AAG AA- AAA AAG AAG AAG AAG AAG AAG AAG
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG
* * *
8828498 AAG AAG AAG AAG GAG AAG GAG AAG GAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
8828529 GAAAAAATGG
Statistics
Matches: 62, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
2 4 0.06
3 58 0.94
ACGTcount: A:0.66, C:0.00, G:0.32, T:0.01
Consensus pattern (3 bp):
AAG
Found at i:8829212 original size:20 final size:20
Alignment explanation
Indices: 8829187--8829224 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
8829177 CAACGTGACA
*
8829187 AGTTAACTGGCTACATCAAC
1 AGTTAACTGGCCACATCAAC
*
8829207 AGTTAACTTGCCACATCA
1 AGTTAACTGGCCACATCA
8829225 GCGATCCGCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (20 bp):
AGTTAACTGGCCACATCAAC
Found at i:8835538 original size:19 final size:21
Alignment explanation
Indices: 8835494--8835539 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
8835484 ATTATAATAC
8835494 TTAAATATTTTAATACTTAAAT
1 TTAAATATTTTAATA-TTAAAT
*
8835516 TTAAATATTTT-AT-TTATAT
1 TTAAATATTTTAATATTAAAT
8835535 TTAAA
1 TTAAA
8835540 CACTTTATCG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 10 0.43
21 2 0.09
22 11 0.48
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
TTAAATATTTTAATATTAAAT
Found at i:8838899 original size:44 final size:44
Alignment explanation
Indices: 8838836--8838926 Score: 173
Period size: 44 Copynumber: 2.1 Consensus size: 44
8838826 ACATACATAG
*
8838836 TATTAATAATATTGTTAATTGAGTTGGTGTCACGAGTCAAACTT
1 TATTAATAATATTATTAATTGAGTTGGTGTCACGAGTCAAACTT
8838880 TATTAATAATATTATTAATTGAGTTGGTGTCACGAGTCAAACTT
1 TATTAATAATATTATTAATTGAGTTGGTGTCACGAGTCAAACTT
8838924 TAT
1 TAT
8838927 ACTAAGGCTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.33, C:0.09, G:0.16, T:0.42
Consensus pattern (44 bp):
TATTAATAATATTATTAATTGAGTTGGTGTCACGAGTCAAACTT
Found at i:8842009 original size:12 final size:12
Alignment explanation
Indices: 8841994--8842023 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8841984 AAGAAGATGC
8841994 AGAAGAAGACAA
1 AGAAGAAGACAA
*
8842006 AGAAGAAGACGA
1 AGAAGAAGACAA
8842018 AGAAGA
1 AGAAGA
8842024 TGAGTACGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.63, C:0.07, G:0.30, T:0.00
Consensus pattern (12 bp):
AGAAGAAGACAA
Found at i:8842601 original size:22 final size:22
Alignment explanation
Indices: 8842576--8842646 Score: 58
Period size: 22 Copynumber: 3.2 Consensus size: 22
8842566 ATATGCTTAT
8842576 CAAATATAAGTATTGTATTAAC
1 CAAATATAAGTATTGTATTAAC
** * *
8842598 CAAATCAT-TTTCATATG-CTT-AT
1 CAAAT-ATAAGT-AT-TGTATTAAC
8842620 CAAATATAAGTATTGTATTAAC
1 CAAATATAAGTATTGTATTAAC
8842642 CAAAT
1 CAAAT
8842647 CATTTATTAA
Statistics
Matches: 35, Mismatches: 8, Indels: 12
0.64 0.15 0.22
Matches are distributed among these distances:
20 2 0.06
21 6 0.17
22 19 0.54
23 6 0.17
24 2 0.06
ACGTcount: A:0.42, C:0.13, G:0.07, T:0.38
Consensus pattern (22 bp):
CAAATATAAGTATTGTATTAAC
Found at i:8842621 original size:44 final size:44
Alignment explanation
Indices: 8842558--8842651 Score: 188
Period size: 44 Copynumber: 2.1 Consensus size: 44
8842548 GTCTCAACTT
8842558 TCATTTTCATATGCTTATCAAATATAAGTATTGTATTAACCAAA
1 TCATTTTCATATGCTTATCAAATATAAGTATTGTATTAACCAAA
8842602 TCATTTTCATATGCTTATCAAATATAAGTATTGTATTAACCAAA
1 TCATTTTCATATGCTTATCAAATATAAGTATTGTATTAACCAAA
8842646 TCATTT
1 TCATTT
8842652 ATTAAATATA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.43
Consensus pattern (44 bp):
TCATTTTCATATGCTTATCAAATATAAGTATTGTATTAACCAAA
Found at i:8842668 original size:44 final size:44
Alignment explanation
Indices: 8842558--8842668 Score: 125
Period size: 44 Copynumber: 2.5 Consensus size: 44
8842548 GTCTCAACTT
* * * *
8842558 TCATTTTCATATGCTTATCAAATATAAGTATTGTATTAACCAAA
1 TCATTTTCAAATGATAACCAAATATAAGTATTGTATTAACCAAA
* * * *
8842602 TCATTTTCATATGCTTATCAAATATAAGTATTGTATTAACCAAA
1 TCATTTTCAAATGATAACCAAATATAAGTATTGTATTAACCAAA
*
8842646 TCATTTATTAAAT-ATAACCAAAT
1 TCATTT-TCAAATGATAACCAAAT
8842669 CATTTTCATA
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
44 57 0.93
45 4 0.07
ACGTcount: A:0.41, C:0.14, G:0.05, T:0.41
Consensus pattern (44 bp):
TCATTTTCAAATGATAACCAAATATAAGTATTGTATTAACCAAA
Found at i:8842888 original size:19 final size:19
Alignment explanation
Indices: 8842866--8842909 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
8842856 TATGAGTTAT
*
8842866 ATATTCAAATACATTTTAA
1 ATATTCAAATACAGTTTAA
* * *
8842885 ATATTTAAATATAGTTTAT
1 ATATTCAAATACAGTTTAA
8842904 ATATTC
1 ATATTC
8842910 TAATTAAAAT
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (19 bp):
ATATTCAAATACAGTTTAA
Found at i:8843173 original size:13 final size:13
Alignment explanation
Indices: 8843157--8843199 Score: 68
Period size: 13 Copynumber: 3.3 Consensus size: 13
8843147 ATTTCTTAAG
8843157 AGCACTTCTCAAA
1 AGCACTTCTCAAA
*
8843170 AGCACTTCTGAAA
1 AGCACTTCTCAAA
*
8843183 AGTACTTCTCAAA
1 AGCACTTCTCAAA
8843196 AGCA
1 AGCA
8843200 ATGAAGAACT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.40, C:0.26, G:0.12, T:0.23
Consensus pattern (13 bp):
AGCACTTCTCAAA
Found at i:8845408 original size:9 final size:9
Alignment explanation
Indices: 8845386--8845432 Score: 53
Period size: 9 Copynumber: 5.2 Consensus size: 9
8845376 AAACTATTTT
*
8845386 TAAAAATTA
1 TAAATATTA
8845395 TAAATCATTA
1 TAAAT-ATTA
8845405 -AAATTATTA
1 TAAA-TATTA
8845414 -AAATATTA
1 TAAATATTA
8845422 TAAATATTA
1 TAAATATTA
8845431 TA
1 TA
8845433 TTTTTAAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
8 5 0.15
9 24 0.71
10 5 0.15
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (9 bp):
TAAATATTA
Found at i:8856114 original size:20 final size:19
Alignment explanation
Indices: 8856075--8856125 Score: 77
Period size: 20 Copynumber: 2.7 Consensus size: 19
8856065 TTTTTTGAAA
8856075 TATTTTGAATTTTAAAAAT
1 TATTTTGAATTTTAAAAAT
*
8856094 TATTTTGAATATTTGAAAAT
1 TATTTTGAAT-TTTAAAAAT
8856114 TATTTT-AATTTT
1 TATTTTGAATTTT
8856126 TTTGGTAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 3 0.10
19 13 0.43
20 14 0.47
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (19 bp):
TATTTTGAATTTTAAAAAT
Found at i:8856129 original size:21 final size:20
Alignment explanation
Indices: 8856066--8856126 Score: 76
Period size: 19 Copynumber: 3.2 Consensus size: 20
8856056 AATTTTGGAT
8856066 TTTTTG-AAA-TATTTTGAA
1 TTTTTGAAAATTATTTTGAA
*
8856084 -TTTTAAAAATTATTTTGAA
1 TTTTTGAAAATTATTTTGAA
*
8856103 TATTTGAAAATTATTTT-AA
1 TTTTTGAAAATTATTTTGAA
8856122 TTTTT
1 TTTTT
8856127 TTGGTAATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
17 4 0.11
18 3 0.08
19 15 0.42
20 14 0.39
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (20 bp):
TTTTTGAAAATTATTTTGAA
Found at i:8856278 original size:17 final size:18
Alignment explanation
Indices: 8856244--8856279 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
8856234 TGTAAAATTT
8856244 AACTCGACTTGAACTCGA
1 AACTCGACTTGAACTCGA
*
8856262 AACTCGAGTTG-ACTCGA
1 AACTCGACTTGAACTCGA
8856279 A
1 A
8856280 TAACTCCATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.22
Consensus pattern (18 bp):
AACTCGACTTGAACTCGA
Found at i:8858416 original size:18 final size:18
Alignment explanation
Indices: 8858383--8858417 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8858373 AAGAAAAAAT
* *
8858383 AAATATGTATATATATAA
1 AAATATGTACACATATAA
8858401 AAATATGTACACATATA
1 AAATATGTACACATATA
8858418 TATAGGTGTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.54, C:0.06, G:0.06, T:0.34
Consensus pattern (18 bp):
AAATATGTACACATATAA
Found at i:8858652 original size:24 final size:25
Alignment explanation
Indices: 8858624--8858681 Score: 73
Period size: 24 Copynumber: 2.3 Consensus size: 25
8858614 TAAGATATAC
* *
8858624 AAAAATATATAAATAC-ATACATAT
1 AAAAATATATAAATACTATAAAAAT
*
8858648 AAAAATATATATATACTTATAAAAAT
1 AAAAATATATAAATAC-TATAAAAAT
8858674 AAAAATAT
1 AAAAATAT
8858682 GTATATGTAT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 15 0.52
26 14 0.48
ACGTcount: A:0.64, C:0.05, G:0.00, T:0.31
Consensus pattern (25 bp):
AAAAATATATAAATACTATAAAAAT
Found at i:8858675 original size:26 final size:24
Alignment explanation
Indices: 8858624--8858687 Score: 74
Period size: 26 Copynumber: 2.6 Consensus size: 24
8858614 TAAGATATAC
* * *
8858624 AAAAATATATAAATACATACATAT
1 AAAAATATATATATACATAAAAAT
8858648 AAAAATATATATATACTTATAAAAAT
1 AAAAATATATATATAC--ATAAAAAT
*
8858674 AAAAATATGTATAT
1 AAAAATATATATAT
8858688 GTATATAGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 15 0.44
26 19 0.56
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.33
Consensus pattern (24 bp):
AAAAATATATATATACATAAAAAT
Found at i:8858681 original size:20 final size:20
Alignment explanation
Indices: 8858640--8858681 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
8858630 ATATAAATAC
* *
8858640 ATACATATAAAAATATATAT
1 ATACATATAAAAATAAAAAT
*
8858660 ATACTTATAAAAATAAAAAT
1 ATACATATAAAAATAAAAAT
8858680 AT
1 AT
8858682 GTATATGTAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (20 bp):
ATACATATAAAAATAAAAAT
Found at i:8858693 original size:36 final size:37
Alignment explanation
Indices: 8858652--8858735 Score: 100
Period size: 38 Copynumber: 2.2 Consensus size: 37
8858642 ACATATAAAA
*
8858652 ATATATATATACTTATAAAAATAA-AAATAT-GTATATGT
1 ATATATATATA--TATAAAAA-AAGAAATATAGTATACGT
*
8858690 ATATAGATATATATAAAAAAAGAAATATGAGTATACGT
1 ATATATATATATATAAAAAAAGAAATAT-AGTATACGT
8858728 ATATATAT
1 ATATATAT
8858736 TAAACAAATT
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
35 2 0.05
36 14 0.35
38 24 0.60
ACGTcount: A:0.54, C:0.02, G:0.08, T:0.36
Consensus pattern (37 bp):
ATATATATATATATAAAAAAAGAAATATAGTATACGT
Found at i:8859451 original size:20 final size:21
Alignment explanation
Indices: 8859426--8859464 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
8859416 TTCAAAAGGA
*
8859426 AAAAAAAT-GAAGGGAAAAAT
1 AAAAAAATAAAAGGGAAAAAT
8859446 AAAAAAATAAAAGGGAAAA
1 AAAAAAATAAAAGGGAAAA
8859465 TAGAGTTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (21 bp):
AAAAAAATAAAAGGGAAAAAT
Found at i:8859800 original size:16 final size:16
Alignment explanation
Indices: 8859779--8859815 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
8859769 GGGGGCTAGG
* *
8859779 GTTTTTTTCTTTTGTT
1 GTTTTTTTCTGTTATT
8859795 GTTTTTTTCTGTTATT
1 GTTTTTTTCTGTTATT
8859811 GTTTT
1 GTTTT
8859816 CTGATTTGGG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.03, C:0.05, G:0.14, T:0.78
Consensus pattern (16 bp):
GTTTTTTTCTGTTATT
Found at i:8860257 original size:10 final size:11
Alignment explanation
Indices: 8860241--8860273 Score: 50
Period size: 10 Copynumber: 3.0 Consensus size: 11
8860231 AAATCTTAAT
8860241 TAATTAATTTA
1 TAATTAATTTA
8860252 -AATTAATTTA
1 TAATTAATTTA
8860262 TAATTATATTTA
1 TAATTA-ATTTA
8860274 GATGTTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
10 10 0.50
11 5 0.25
12 5 0.25
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TAATTAATTTA
Found at i:8870121 original size:21 final size:21
Alignment explanation
Indices: 8870088--8870130 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 21
8870078 CGCGAAAAAA
8870088 AATAATTTCAAAATAAAA-CAT
1 AATAATTTCAAAA-AAAAGCAT
8870109 AATACATTT-AAAAAAAAGCAT
1 AATA-ATTTCAAAAAAAAGCAT
8870130 A
1 A
8870131 TATATACAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
20 4 0.20
21 12 0.60
22 4 0.20
ACGTcount: A:0.63, C:0.09, G:0.02, T:0.26
Consensus pattern (21 bp):
AATAATTTCAAAAAAAAGCAT
Found at i:8871709 original size:44 final size:44
Alignment explanation
Indices: 8871649--8872155 Score: 243
Period size: 44 Copynumber: 11.7 Consensus size: 44
8871639 TCTTAGTCTA
* *
8871649 CTCCACTGCAATTTCAGGGAGATAAGATTATTGACTGTAATCTA
1 CTCCACTGCAACTTCAGGGAGATAAGATTATTGACTGTAATCTG
* *
8871693 CTCCACTGCAACTTCAGGGAGATAAGA-T-TTGCCATCTTTAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTATTG--A-CTGTAATCTG
* *
8871738 C-CTCACTGCAACTTCA-GGAGGATAAGACTT-TCTTA-TGTAGTCTG
1 CTC-CACTGCAACTTCAGGGA-GATAAGA-TTAT-TGACTGTAATCTG
* * * * **
8871782 CTCCACTGCAACCTCAAGGAGATATGACTA--GA-TGCGATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTATTGACTGTAATCTG
* * ** *
8871823 CT-CTCTGCAACTTCAGAGAGATAAGATCTGA--GGTTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGAT-T-ATTGACTGTAATCTG
* * * *
8871866 CTCCACTGCAACTTCAGAGAGATAAGATTATCGGCTTTAATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTATTGACTGTAATCTG
** *
8871910 CTCCACTGCAACTTCAGGGAGATAAGATT-TACCATCT-TCAGTCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTAT-TGA-CTGT-AATCTG
* * * *
8871955 -TCTCACTGCAACTTCA-GAAGGATAAGACTTGCTT-AC-GTAGTCTA
1 CTC-CACTGCAACTTCAGGGA-GATAAGA-TT-ATTGACTGTAATCTG
* * * * ** *
8871999 CTCCACTACAACCTCAGGGAGATATGACTA--GA-TGCGATTTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTATTGACTGTAATCTG
* * * * ** * *
8872040 CTCTA-TGCAACTTCCA-AGAGGTAAGATT-TAAGGTTTTAATCCG
1 CTCCACTGCAACTT-CAGGGAGATAAGATTAT-TGACTGTAATCTG
* * * * *
8872083 CTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATTTG
1 CTCCACTGCAACTTCAGGGAGATAAGATTATTGACTGTAATCTG
*
8872127 TTCCACTGCAACTTCAGGGAGATAAGATT
1 CTCCACTGCAACTTCAGGGAGATAAGATT
8872156 TGCCATCTTT
Statistics
Matches: 359, Mismatches: 66, Indels: 76
0.72 0.13 0.15
Matches are distributed among these distances:
40 33 0.09
41 20 0.06
42 7 0.02
43 23 0.06
44 202 0.56
45 66 0.18
46 4 0.01
47 2 0.01
48 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (44 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTATTGACTGTAATCTG
Found at i:8871910 original size:128 final size:129
Alignment explanation
Indices: 8871698--8871933 Score: 300
Period size: 128 Copynumber: 1.8 Consensus size: 129
8871688 ATCTACTCCA
* * * *
8871698 CTGCAACTTCAGGGAGATAAGATTTGCCATCTTTAGTCTGCCTCACTGCAACTTCAGGAGGATAA
1 CTGCAACTTCAGAGAGATAAGATCTGACATCTTTAATCTGCCTCACTGCAACTTCAGGAGGATAA
** *
8871763 GACTTTCTTATGTAGTCTGCTCCACTGCAACCTCAAGGAGATATGACTAGATGCGATCTGCTCT
66 GACTTTCGGATGTAATCTGCTCCACTGCAACCTCAAGGAGATATGACTAGATGCGATCTGCTCT
**
8871827 CTGCAACTTCAGAGAGATAAGATCTGAGGT-TTTAATCTG-CTCCACTGCAACTTCA-GAGAGAT
1 CTGCAACTTCAGAGAGATAAGATCTGACATCTTTAATCTGCCT-CACTGCAACTTCAGGAG-GAT
* * * *
8871889 AAGA-TTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATA
64 AAGACTT-TCGGATGTAATCTGCTCCACTGCAACCTCAAGGAGATA
8871934 AGATTTACCA
Statistics
Matches: 91, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
127 7 0.08
128 59 0.65
129 25 0.27
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.29
Consensus pattern (129 bp):
CTGCAACTTCAGAGAGATAAGATCTGACATCTTTAATCTGCCTCACTGCAACTTCAGGAGGATAA
GACTTTCGGATGTAATCTGCTCCACTGCAACCTCAAGGAGATATGACTAGATGCGATCTGCTCT
Found at i:8872024 original size:217 final size:217
Alignment explanation
Indices: 8871649--8872170 Score: 812
Period size: 217 Copynumber: 2.4 Consensus size: 217
8871639 TCTTAGTCTA
* * * * *
8871649 CTCCACTGCAATTTCAGGGAGATAAGATTATTGACTGTAATCTACTCCACTGCAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * *
8871714 ATAAGATTTGCCATCTTTAGTCTGCCTCACTGCAACTTCAGGAGGATAAGACTTTCTTATGTAGT
66 ATAAGATTTGCCATCTTTAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACTTGCTTACGTAGT
* * *
8871779 CTGCTCCACTGCAACCTCAAGGAGATATGACTAGATGCGATCTGCTCTCTGCAACTT-CAGAGAG
131 CTACTCCACTACAACCTCAAGGAGATATGACTAGATGCGATCTGCTCTATGCAACTTCCA-AGAG
* *
8871843 ATAAGATCTGAGGTTTTAATCTG
195 ATAAGATCTAAGGTTTTAATCCG
*
8871866 CTCCACTGCAACTTCAGAGAGATAAGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
* * *
8871931 ATAAGATTTACCATCTTCAGTCTGTCTCACTGCAACTTCAGAAGGATAAGACTTGCTTACGTAGT
66 ATAAGATTTGCCATCTTTAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACTTGCTTACGTAGT
* * *
8871996 CTACTCCACTACAACCTCAGGGAGATATGACTAGATGCGATTTGCTCTATGCAACTTCCAAGAGG
131 CTACTCCACTACAACCTCAAGGAGATATGACTAGATGCGATCTGCTCTATGCAACTTCCAAGAGA
*
8872061 TAAGATTTAAGGTTTTAATCCG
196 TAAGATCTAAGGTTTTAATCCG
* * *
8872083 CTCCACTGCAACTTCAGGGAGATAGGATTATCGGCTTTAATTTGTTCCACTGCAACTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
8872148 ATAAGATTTGCCATCTTTAGTCT
66 ATAAGATTTGCCATCTTTAGTCT
8872171 ATTCCATTGC
Statistics
Matches: 277, Mismatches: 27, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
217 275 0.99
218 2 0.01
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (217 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAG
ATAAGATTTGCCATCTTTAGTCTGCCTCACTGCAACTTCAGAAGGATAAGACTTGCTTACGTAGT
CTACTCCACTACAACCTCAAGGAGATATGACTAGATGCGATCTGCTCTATGCAACTTCCAAGAGA
TAAGATCTAAGGTTTTAATCCG
Found at i:8881156 original size:39 final size:39
Alignment explanation
Indices: 8881102--8881179 Score: 147
Period size: 39 Copynumber: 2.0 Consensus size: 39
8881092 ATTGACAAAC
*
8881102 GCATTTTTTTATAATCTGTCTTCAAACTACCCAGCTCTT
1 GCATTTTTTTATAATCCGTCTTCAAACTACCCAGCTCTT
8881141 GCATTTTTTTATAATCCGTCTTCAAACTACCCAGCTCTT
1 GCATTTTTTTATAATCCGTCTTCAAACTACCCAGCTCTT
8881180 CCTCAGCCTT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.23, C:0.27, G:0.08, T:0.42
Consensus pattern (39 bp):
GCATTTTTTTATAATCCGTCTTCAAACTACCCAGCTCTT
Found at i:8884297 original size:21 final size:22
Alignment explanation
Indices: 8884273--8884314 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
8884263 AAGTATGCGA
*
8884273 AAAAAATAATA-ATTTCAAAAT
1 AAAAAATAATACATTTAAAAAT
*
8884294 AAAACATAATACATTTAAAAA
1 AAAAAATAATACATTTAAAAA
8884315 AAGCATATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.67, C:0.07, G:0.00, T:0.26
Consensus pattern (22 bp):
AAAAAATAATACATTTAAAAAT
Found at i:8892569 original size:30 final size:31
Alignment explanation
Indices: 8892530--8892589 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 31
8892520 GGAGGTGGGA
*
8892530 TGGGAAGGAAATAAAAGTTTTAGGGGAAAAG
1 TGGGAAGGAAATAAAAATTTTAGGGGAAAAG
* *
8892561 TGGG-AGGAAGTAAAAATTTTGGGGGAAAA
1 TGGGAAGGAAATAAAAATTTTAGGGGAAAA
8892590 TAAAAGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
30 22 0.85
31 4 0.15
ACGTcount: A:0.43, C:0.00, G:0.37, T:0.20
Consensus pattern (31 bp):
TGGGAAGGAAATAAAAATTTTAGGGGAAAAG
Found at i:8893912 original size:9 final size:9
Alignment explanation
Indices: 8893898--8893934 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
8893888 TATAGTTTGA
8893898 TATTCGAAT
1 TATTCGAAT
8893907 TATTCGAAT
1 TATTCGAAT
*
8893916 TATTCGAGT
1 TATTCGAAT
8893925 TATTCGAAT
1 TATTCGAAT
8893934 T
1 T
8893935 CAAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:8906026 original size:17 final size:18
Alignment explanation
Indices: 8905988--8906026 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
8905978 TTTAGCATCC
*
8905988 ATTTAACTTTTCATATTT
1 ATTTAACTTTTCAAATTT
8906006 -TTTAACTTTT-AAATTT
1 ATTTAACTTTTCAAATTT
8906022 ATTTA
1 ATTTA
8906027 TTTTATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
16 5 0.26
17 14 0.74
ACGTcount: A:0.31, C:0.08, G:0.00, T:0.62
Consensus pattern (18 bp):
ATTTAACTTTTCAAATTT
Found at i:8907114 original size:12 final size:12
Alignment explanation
Indices: 8907097--8907122 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8907087 CAAAACAGAC
8907097 TTTTAGCGGCGT
1 TTTTAGCGGCGT
8907109 TTTTAGCGGCGT
1 TTTTAGCGGCGT
8907121 TT
1 TT
8907123 GGATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.15, G:0.31, T:0.46
Consensus pattern (12 bp):
TTTTAGCGGCGT
Found at i:8907338 original size:73 final size:72
Alignment explanation
Indices: 8907191--8907362 Score: 211
Period size: 73 Copynumber: 2.4 Consensus size: 72
8907181 ACAATAAGCA
* * * *
8907191 TTAGCAGCGTTTTTTAA-AAAGCGCCACAAAAAACCTAAGCCCAACGACGCCGTTTTTTGAGCTT
1 TTAGCGGCG-TTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCAAACGACGCCGTTTTGTGAGCTT
* *
8907255 TTGGGGAT
65 TCGAGGAT
* * * *
8907263 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAATAACCTGAGCCAAAATGACGCCGTTTTGTGAGCTT
1 TTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCC-AAACGACGCCGTTTTGTGAGCTT
8907328 TCGAGGAT
65 TCGAGGAT
* *
8907336 TTAGCGACGTTTTTAAGGAAGCGCCGC
1 TTAGCGGCGTTTTTAAGAAAGCGCCGC
8907363 TAATGCTCAG
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
71 6 0.07
72 29 0.34
73 50 0.59
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.27
Consensus pattern (72 bp):
TTAGCGGCGTTTTTAAGAAAGCGCCGCAAAAAACCTAAGCCAAACGACGCCGTTTTGTGAGCTTT
CGAGGAT
Found at i:8907462 original size:114 final size:113
Alignment explanation
Indices: 8907262--8907543 Score: 476
Period size: 114 Copynumber: 2.5 Consensus size: 113
8907252 CTTTTGGGGA
* *
8907262 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAATAACCTGAGCCAAAATGACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAA-GACGCCGTTTTGTGAGCT
8907327 TTCGAGGATTTAGCGACGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGC
65 TTCGAGGATTTAGCGACGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGC
*
8907376 TTTAGCGGCGTTTTTGGGAAAGCGCCGCAAAAAACCTAAGCCAAAACGACGCCGTTTTGTGAGCT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAA-GACGCCGTTTTGTGAGCT
*
8907441 TTCGAGGATTTAGCGGCGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGC
65 TTCGAGGATTTAGCGACGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGC
* *
8907490 TTTAGCGGCG-TTTTAAGAAAGCGCCGCAAAAAACTTAAGCCGAAAAGACGCCGT
1 TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCC-AAAAGACGCCGT
8907544 GGTCAATGGA
Statistics
Matches: 159, Mismatches: 8, Indels: 3
0.94 0.05 0.02
Matches are distributed among these distances:
113 36 0.23
114 123 0.77
ACGTcount: A:0.27, C:0.22, G:0.28, T:0.24
Consensus pattern (113 bp):
TTTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCAAAAGACGCCGTTTTGTGAGCTT
TCGAGGATTTAGCGACGTTTTTAAGGAAGCGCCGCTAATGCTCAGGGC
Found at i:8907883 original size:43 final size:43
Alignment explanation
Indices: 8907835--8908064 Score: 262
Period size: 43 Copynumber: 5.3 Consensus size: 43
8907825 TTTTTTGTGA
* *
8907835 TCTTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGTCAGGT
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGT
* ** * * *
8907878 TCTTTAGTGGCGTTAATAGGAAAAGGGCCGCTAAAGGTCAAGT
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGT
* * ** * *
8907921 TCTTTAGCGGCGTTTGTAGGAAAAGTGCCGCTAAAGAACCTGA
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGT
* * * *
8907964 CCTTTAGCGGCGTTTGTGGGTAAAGCGTCGCTAAAGATCATGT
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGT
** * *
8908007 TCTTTAGCGGCGTTTGTGAAAAAAACGCCGTTAAAGGTCATGT
1 TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGT
8908050 TCTTTAGCGGCGTTT
1 TCTTTAGCGGCGTTT
8908065 TTTTAAATAA
Statistics
Matches: 156, Mismatches: 31, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
43 156 1.00
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
TCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGT
Found at i:8908183 original size:22 final size:22
Alignment explanation
Indices: 8908158--8908200 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
8908148 TAGCGGCGCT
* *
8908158 AAAAAATGCCGCTAAAGGCCTA
1 AAAAAACGCCGCTAAAAGCCTA
*
8908180 AAAAAACGCCTCTAAAAGCCT
1 AAAAAACGCCGCTAAAAGCCT
8908201 GTTTTGGTGT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.47, C:0.26, G:0.14, T:0.14
Consensus pattern (22 bp):
AAAAAACGCCGCTAAAAGCCTA
Found at i:8912334 original size:16 final size:16
Alignment explanation
Indices: 8912308--8912377 Score: 113
Period size: 16 Copynumber: 4.4 Consensus size: 16
8912298 TTTGGTTCGC
*
8912308 TGTATTGGAATAGAGG
1 TGTAATGGAATAGAGG
*
8912324 CGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
8912340 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
*
8912356 TATAATGGAATAGAGG
1 TGTAATGGAATAGAGG
8912372 TGTAAT
1 TGTAAT
8912378 AGCAAATCAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.37, C:0.01, G:0.34, T:0.27
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:8912628 original size:16 final size:16
Alignment explanation
Indices: 8912591--8912632 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
8912581 TTAATCATAT
*
8912591 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
8912607 TT-AAATATATTATAA
1 TTAAAATATATTATAA
8912622 TTAAAATATAT
1 TTAAAATATAT
8912633 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:8912639 original size:14 final size:15
Alignment explanation
Indices: 8912600--8912641 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
8912590 TTTAAACATA
*
8912600 ATTATTATTAAATAT
1 ATTATAATTAAATAT
8912615 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
8912629 A-TATAATTTAATA
1 ATTATAATTAAATA
8912642 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:8912691 original size:61 final size:61
Alignment explanation
Indices: 8912626--8912813 Score: 190
Period size: 61 Copynumber: 3.1 Consensus size: 61
8912616 TTATAATTAA
*
8912626 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTGAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
* * * * * * * * * *
8912687 AATATATGATACT-ATAAAA-TATAAATTAA-C-ATAATTATTAT-TAAATATA-TTATAATTAA
1 AATATATAAT-TTAATAAAATTCTTAA-TAATCAAT-ATTCTTATATGAATTTACTCA-AATCAT
*
8912746 AATATATAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCAT
1 AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
8912807 AATATAT
1 AATATAT
8912814 GATACTATAA
Statistics
Matches: 96, Mismatches: 21, Indels: 20
0.70 0.15 0.15
Matches are distributed among these distances:
58 3 0.03
59 30 0.31
60 23 0.24
61 37 0.39
62 3 0.03
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (61 bp):
AATATATAATTTAATAAAATTCTTAATAATCAATATTCTTATATGAATTTACTCAAATCAT
Found at i:8912759 original size:14 final size:15
Alignment explanation
Indices: 8912710--8912761 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 15
8912700 ATAAAATATA
8912710 AATTAACATA-ATTAT
1 AATTAA-ATATATTAT
*
8912725 TATTAAATATATTAT
1 AATTAAATATATTAT
8912740 AATTAAA-ATA-TAT
1 AATTAAATATATTAT
*
8912753 AATTTAATA
1 AATTAAATA
8912762 AAATTCTTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
13 9 0.28
14 7 0.22
15 16 0.50
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (15 bp):
AATTAAATATATTAT
Found at i:8912807 original size:120 final size:121
Alignment explanation
Indices: 8912594--8912886 Score: 509
Period size: 120 Copynumber: 2.4 Consensus size: 121
8912584 ATCATATTTA
8912594 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
* *
8912659 TATTCTTATATGAATTTACTGAAATCATAATATATGATACTATAAAATATAAATT-
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
*
8912714 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATTAA
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
*
8912779 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAATTTG
66 TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
* * *
8912835 AA-ATAATTAATATTAAATATATTTTAATTAAAATATATGATTTAATAAAATT
1 AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATT
8912887 TAAAATAATT
Statistics
Matches: 165, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
120 163 0.99
121 2 0.01
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (121 bp):
AACATAATTATTATTAAATATATTATAATTAAAATATATAATTTAATAAAATTCTTAATAATCAA
TATTCTTATATGAATTTACTCAAATCATAATATATGATACTATAAAAGATAAATTG
Found at i:8912973 original size:92 final size:93
Alignment explanation
Indices: 8912877--8913113 Score: 256
Period size: 95 Copynumber: 2.5 Consensus size: 93
8912867 ATATATGATT
* *
8912877 TAATAAAATTT-AAAATAATT-ATAACTAATAAATTATCTTATATGAATTT-GT-ATAATTTAAA
1 TAATAAAATTTCAAAATAATTCTTAA-TAATAAATT-TCTTATATGAATTTAATCAT-ATTTAAA
* *
8912938 ATAATTATTATTACACATAATTTAATAATAA
63 ATAATTAATATTAAACATAATTTAATAATAA
*
8912969 TAATATATAATTTCATAAAT--TTCTTGATAATAAATTTTCTTATATGAATTTAATCATATTTAA
1 TAATA-A-AATTTCA-AAATAATTCTTAATAATAAA-TTTCTTATATGAATTTAATCATATTTAA
* *
8913032 AATAATTAATATTAAATATAATTTAATAATGA
62 AATAATTAATATTAAACATAATTTAATAATAA
* *
8913064 T-ATATAATTTCATAA-AATTCTTAATAATAAAATGTTCTTATATGAATTTA
1 TAATAAAATTTCAAAATAATTCTTAATAAT-AAAT-TTCTTATATGAATTTA
8913114 CTAAAATCAA
Statistics
Matches: 123, Mismatches: 10, Indels: 23
0.79 0.06 0.15
Matches are distributed among these distances:
91 2 0.02
92 23 0.19
93 20 0.16
94 31 0.25
95 41 0.33
96 6 0.05
ACGTcount: A:0.48, C:0.05, G:0.03, T:0.45
Consensus pattern (93 bp):
TAATAAAATTTCAAAATAATTCTTAATAATAAATTTCTTATATGAATTTAATCATATTTAAAATA
ATTAATATTAAACATAATTTAATAATAA
Found at i:8913057 original size:95 final size:92
Alignment explanation
Indices: 8912902--8913113 Score: 284
Period size: 92 Copynumber: 2.3 Consensus size: 92
8912892 TAATTATAAC
* * * *
8912902 TAATAAATTATCTTATATGAATTT-GTATAATTTAAAATAATTATTATTACACATAATTTAATAA
1 TAATAAATTTTCTTATATGAATTTAATATAATTTAAAATAATTAATATTAAACATAA-TT--TAA
* *
8912966 TAATAATATATAATTTCATAAATTTCTTGA
63 TAATAATATATAATTTCATAAAATTCTTAA
*
8912996 TAATAAATTTTCTTATATGAATTTAATCAT-ATTTAAAATAATTAATATTAAATATAATTTAATA
1 TAATAAATTTTCTTATATGAATTTAAT-ATAATTTAAAATAATTAATATTAAACATAATTTAATA
*
8913060 ATGATATATAATTTCATAAAATTCTTAA
65 ATAATATATAATTTCATAAAATTCTTAA
*
8913088 TAATAAAATGTTCTTATATGAATTTA
1 TAAT-AAATTTTCTTATATGAATTTA
8913114 CTAAAATCAA
Statistics
Matches: 106, Mismatches: 9, Indels: 7
0.87 0.07 0.06
Matches are distributed among these distances:
92 34 0.32
93 20 0.19
94 25 0.24
95 25 0.24
96 2 0.02
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.46
Consensus pattern (92 bp):
TAATAAATTTTCTTATATGAATTTAATATAATTTAAAATAATTAATATTAAACATAATTTAATAA
TAATATATAATTTCATAAAATTCTTAA
Found at i:8919124 original size:87 final size:87
Alignment explanation
Indices: 8918978--8919157 Score: 342
Period size: 87 Copynumber: 2.1 Consensus size: 87
8918968 TCACTTTATA
8918978 TTTTGGATCACTCTGGACAGTCTCGCATCCTAATCGGACCACAACATAAGAAGCACTTCACTGGC
1 TTTTGGATCACTCTGGACAGTCTCGCATCCTAATCGGACCACAACATAAGAAGCACTTCACTGGC
8919043 TTCTTTTCATTCTCTCTAACCC
66 TTCTTTTCATTCTCTCTAACCC
*
8919065 TTTTGGATCACTCTGGACAGTCTCGCGTCCTAATCGGACCACAACATAAGAAGCACTTCACTGGC
1 TTTTGGATCACTCTGGACAGTCTCGCATCCTAATCGGACCACAACATAAGAAGCACTTCACTGGC
8919130 TTCTTTTCATTCTCTCTAACCC
66 TTCTTTTCATTCTCTCTAACCC
*
8919152 CTTTGG
1 TTTTGG
8919158 CTTCGACAGA
Statistics
Matches: 91, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 91 1.00
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.32
Consensus pattern (87 bp):
TTTTGGATCACTCTGGACAGTCTCGCATCCTAATCGGACCACAACATAAGAAGCACTTCACTGGC
TTCTTTTCATTCTCTCTAACCC
Found at i:8922602 original size:39 final size:39
Alignment explanation
Indices: 8922548--8922625 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
8922538 TTATAAAGTT
8922548 ATATGTATAGCCTACTAATATTTAACCTAACATTGATCA
1 ATATGTATAGCCTACTAATATTTAACCTAACATTGATCA
8922587 ATATGTATAGCCTACTAATATTTAACCTAACATTGATCA
1 ATATGTATAGCCTACTAATATTTAACCTAACATTGATCA
8922626 TTTTGTCTTT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.36
Consensus pattern (39 bp):
ATATGTATAGCCTACTAATATTTAACCTAACATTGATCA
Found at i:8934747 original size:54 final size:54
Alignment explanation
Indices: 8934673--8934776 Score: 190
Period size: 54 Copynumber: 1.9 Consensus size: 54
8934663 AATAAGATAG
*
8934673 CTTTCTGGATCTTAGATGTGTTCCAGACAATGCCTTAGGTCATCCCTAAATATC
1 CTTTCTGGATCTTAGATGTGTTCCAAACAATGCCTTAGGTCATCCCTAAATATC
*
8934727 CTTTTTGGATCTTAGATGTGTTCCAAACAATGCCTTAGGTCATCCCTAAA
1 CTTTCTGGATCTTAGATGTGTTCCAAACAATGCCTTAGGTCATCCCTAAA
8934777 GATCTCAGCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
54 48 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (54 bp):
CTTTCTGGATCTTAGATGTGTTCCAAACAATGCCTTAGGTCATCCCTAAATATC
Found at i:8936455 original size:189 final size:189
Alignment explanation
Indices: 8936135--8936512 Score: 738
Period size: 189 Copynumber: 2.0 Consensus size: 189
8936125 TTTGTCCATT
8936135 CTCTTCCAGTTGCATTCTCCTTTATTCTTTTGTAATTCCTCATCAGTAGATCAAATCTCTACTCT
1 CTCTTCCAGTTGCATTCTCCTTTATTCTTTTGTAATTCCTCATCAGTAGATCAAATCTCTACTCT
8936200 TGAATAAATGTATATGGCTATAATTGTTGCAAGTATTAGTCTATATCGTCTTCTTGAAATTCAAT
66 TGAATAAATGTATATGGCTATAATTGTTGCAAGTATTAGTCTATATCGTCTTCTTGAAATTCAAT
*
8936265 GGCTGGGCTTGAAGCACTTGCACTAAACTTACCATAGGATAATCTATTTTTATTGATCC
131 GGCTGGGCTTAAAGCACTTGCACTAAACTTACCATAGGATAATCTATTTTTATTGATCC
*
8936324 CTCTTCCAGTTGCATTCTCCTTTATTCTTTTGTAATTCCTCTTCAGTAGATCAAATCTCTACTCT
1 CTCTTCCAGTTGCATTCTCCTTTATTCTTTTGTAATTCCTCATCAGTAGATCAAATCTCTACTCT
8936389 TGAATAAATGTATATGGCTATAATTGTTGCAAGTATTAGTCTATATCGTCTTCTTGAAATTCAAT
66 TGAATAAATGTATATGGCTATAATTGTTGCAAGTATTAGTCTATATCGTCTTCTTGAAATTCAAT
8936454 GGCTGGGCTTAAAGCACTTGCACTAAACTTACCATAGGATAATCTATTTTTATTGATCC
131 GGCTGGGCTTAAAGCACTTGCACTAAACTTACCATAGGATAATCTATTTTTATTGATCC
8936513 TACACTTTAA
Statistics
Matches: 187, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
189 187 1.00
ACGTcount: A:0.26, C:0.20, G:0.13, T:0.40
Consensus pattern (189 bp):
CTCTTCCAGTTGCATTCTCCTTTATTCTTTTGTAATTCCTCATCAGTAGATCAAATCTCTACTCT
TGAATAAATGTATATGGCTATAATTGTTGCAAGTATTAGTCTATATCGTCTTCTTGAAATTCAAT
GGCTGGGCTTAAAGCACTTGCACTAAACTTACCATAGGATAATCTATTTTTATTGATCC
Found at i:8943766 original size:30 final size:29
Alignment explanation
Indices: 8943713--8943769 Score: 78
Period size: 30 Copynumber: 1.9 Consensus size: 29
8943703 AAATTTTGGT
* * *
8943713 ACACACAGGCTGTCACACGGCCATGTGAC
1 ACACACAGCCTATCACACAGCCATGTGAC
8943742 ACACACAGCCTATCCACACAGCCATGTG
1 ACACACAGCCTAT-CACACAGCCATGTG
8943770 TCTTAATGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.30, C:0.37, G:0.19, T:0.14
Consensus pattern (29 bp):
ACACACAGCCTATCACACAGCCATGTGAC
Found at i:8947064 original size:25 final size:26
Alignment explanation
Indices: 8947028--8947110 Score: 82
Period size: 26 Copynumber: 3.3 Consensus size: 26
8947018 GAAGTTTAAG
* *
8947028 AGAGCCA-T-ATCAAGTAGCTC-TAA
1 AGAGCCATTAATCAAGAAGCTCACAA
*
8947051 AGAGCCATTAATCAGGAAGCTCACAA
1 AGAGCCATTAATCAAGAAGCTCACAA
* ** *
8947077 AGAGCCTTTAATCGGGAAGCTCACGA
1 AGAGCCATTAATCAAGAAGCTCACAA
8947103 AGAGCCAT
1 AGAGCCAT
8947111 ATAACGGGAT
Statistics
Matches: 50, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
23 7 0.14
24 1 0.02
25 10 0.20
26 32 0.64
ACGTcount: A:0.37, C:0.23, G:0.22, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATCAAGAAGCTCACAA
Found at i:8947118 original size:26 final size:26
Alignment explanation
Indices: 8947049--8947124 Score: 100
Period size: 26 Copynumber: 2.9 Consensus size: 26
8947039 AAGTAGCTCT
*
8947049 AAAGAGCCATTAATCAGGAAGCTCAC
1 AAAGAGCCATTAATCGGGAAGCTCAC
*
8947075 AAAGAGCCTTTAATCGGGAAGCTCAC
1 AAAGAGCCATTAATCGGGAAGCTCAC
* *
8947101 GAAGAGCCATATAA-CGGGATGCTC
1 AAAGAGCCAT-TAATCGGGAAGCTC
8947125 GTAAGAGTTG
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 41 0.93
27 3 0.07
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
AAAGAGCCATTAATCGGGAAGCTCAC
Found at i:8958119 original size:65 final size:65
Alignment explanation
Indices: 8958015--8958137 Score: 246
Period size: 65 Copynumber: 1.9 Consensus size: 65
8958005 CAAGGTACTC
8958015 AAACTCCTCTGGAAGCGATCCCAACAACATTAACGCCAAGTCTTCGTCTTCAAAAGTCACATCCG
1 AAACTCCTCTGGAAGCGATCCCAACAACATTAACGCCAAGTCTTCGTCTTCAAAAGTCACATCCG
8958080 AAACTCCTCTGGAAGCGATCCCAACAACATTAACGCCAAGTCTTCGTCTTCAAAAGTC
1 AAACTCCTCTGGAAGCGATCCCAACAACATTAACGCCAAGTCTTCGTCTTCAAAAGTC
8958138 TTCGTTCATT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
65 58 1.00
ACGTcount: A:0.33, C:0.32, G:0.14, T:0.22
Consensus pattern (65 bp):
AAACTCCTCTGGAAGCGATCCCAACAACATTAACGCCAAGTCTTCGTCTTCAAAAGTCACATCCG
Found at i:8975977 original size:43 final size:43
Alignment explanation
Indices: 8975929--8976072 Score: 166
Period size: 43 Copynumber: 3.4 Consensus size: 43
8975919 TGTGATTTCG
* *
8975929 TGTAAGAACATGTCTGGGACATTGACATCGATATGAGATTACT
1 TGTAAGAACATGTCTGGGACATTGGCATCGATATGAGATTACA
*
8975972 TGTAAGAACATGTCTGGGACATTGGCATCG-TAT-ATGATTTCA
1 TGTAAGAACATGTCTGGGACATTGGCATCGATATGA-GATTACA
* * * * * *
8976014 TATAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATAACA
1 TGTAAGAACATGTCTGGGACATTGGCATCGATATGAGATTACA
* *
8976057 TGTAAGACCATATCTG
1 TGTAAGAACATGTCTG
8976073 AAATATGGCA
Statistics
Matches: 85, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
41 1 0.01
42 34 0.40
43 50 0.59
ACGTcount: A:0.31, C:0.16, G:0.24, T:0.30
Consensus pattern (43 bp):
TGTAAGAACATGTCTGGGACATTGGCATCGATATGAGATTACA
Found at i:8979539 original size:16 final size:16
Alignment explanation
Indices: 8979518--8979553 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
8979508 TTTTACATAA
*
8979518 ATATAAATATTTGTTT
1 ATATAAATATTTGCTT
8979534 ATATAAATATTTGCTT
1 ATATAAATATTTGCTT
8979550 ATAT
1 ATAT
8979554 TAAGTTGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.39, C:0.03, G:0.06, T:0.53
Consensus pattern (16 bp):
ATATAAATATTTGCTT
Found at i:8989677 original size:41 final size:41
Alignment explanation
Indices: 8989632--8989760 Score: 222
Period size: 41 Copynumber: 3.1 Consensus size: 41
8989622 TCATATTCGG
8989632 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
1 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
* * * *
8989673 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGTTTCAG
1 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
8989714 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
1 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
8989755 ATCACC
1 ATCACC
8989761 AATTCCAAAC
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 80 1.00
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (41 bp):
ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
Found at i:8990000 original size:19 final size:19
Alignment explanation
Indices: 8989976--8990012 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8989966 TTGTTCGATC
*
8989976 CACACATATATATATATTA
1 CACACATATACATATATTA
8989995 CACACATATACATATATT
1 CACACATATACATATATT
8990013 CGCACATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (19 bp):
CACACATATACATATATTA
Found at i:8997280 original size:41 final size:41
Alignment explanation
Indices: 8997235--8997363 Score: 222
Period size: 41 Copynumber: 3.1 Consensus size: 41
8997225 TCATATTCGG
8997235 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
1 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
* * *
8997276 ATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
1 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
*
8997317 ATCACCGGCACTTAGCATGCTAGGTTTATAACCTGATTCAT
1 ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
8997358 ATCACC
1 ATCACC
8997364 AATTCCAAAC
Statistics
Matches: 81, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 81 1.00
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (41 bp):
ATCACCGGCACTTAGCCTGCTAGGTTTATAACCTGATTCAT
Found at i:8997603 original size:19 final size:19
Alignment explanation
Indices: 8997579--8997615 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
8997569 TTGTTCGATC
*
8997579 CACACATATATATATATTA
1 CACACATATACATATATTA
8997598 CACACATATACATATATT
1 CACACATATACATATATT
8997616 CGCACATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.19, G:0.00, T:0.35
Consensus pattern (19 bp):
CACACATATACATATATTA
Found at i:9003910 original size:34 final size:34
Alignment explanation
Indices: 9003825--9003983 Score: 113
Period size: 34 Copynumber: 4.6 Consensus size: 34
9003815 TTAGTATATT
* * * * *
9003825 CGACTAGCACTAGGCACAACTTTCGTCAGTTCATC
1 CGACTAGCGCTGGGCAC-ACATTCGTCGGTTTATC
* * * * *
9003860 TGATTAGTGCTAGGCACACATTCGTTGGTTTATC
1 CGACTAGCGCTGGGCACACATTCGTCGGTTTATC
* * * * *
9003894 CGACTAGCGTTGGGCACAACTTTTG-CGAGCTTGTC
1 CGACTAGCGCTGGGCAC-ACATTCGTCG-GTTTATC
* *
9003929 TGACTAGTGCTGGGCACACATTCGTCGGTTTATC
1 CGACTAGCGCTGGGCACACATTCGTCGGTTTATC
* *
9003963 CGACTAGCACTGGGCTCACAT
1 CGACTAGCGCTGGGCACACAT
9003984 CTAATATCAT
Statistics
Matches: 92, Mismatches: 29, Indels: 7
0.72 0.23 0.05
Matches are distributed among these distances:
34 53 0.58
35 39 0.42
ACGTcount: A:0.21, C:0.26, G:0.24, T:0.30
Consensus pattern (34 bp):
CGACTAGCGCTGGGCACACATTCGTCGGTTTATC
Found at i:9003977 original size:69 final size:69
Alignment explanation
Indices: 9003825--9003977 Score: 202
Period size: 69 Copynumber: 2.2 Consensus size: 69
9003815 TTAGTATATT
* * *
9003825 CGACTAGCACTAGGCACAACTTTCGTCAGTTCATCTGATTAGTGCTAGGCACACATTCGTTGGTT
1 CGACTAGCACTGGGCACAACTTTCGTCAGTTCATCTGACTAGTGCTAGGCACACATTCGTCGGTT
9003890 TATC
66 TATC
** * * *
9003894 CGACTAGCGTTGGGCACAACTTTTG-CGAGCTT-GTCTGACTAGTGCTGGGCACACATTCGTCGG
1 CGACTAGCACTGGGCACAACTTTCGTC-AG-TTCATCTGACTAGTGCTAGGCACACATTCGTCGG
9003957 TTTATC
64 TTTATC
9003963 CGACTAGCACTGGGC
1 CGACTAGCACTGGGC
9003978 TCACATCTAA
Statistics
Matches: 72, Mismatches: 10, Indels: 4
0.84 0.12 0.05
Matches are distributed among these distances:
68 1 0.01
69 69 0.96
70 2 0.03
ACGTcount: A:0.20, C:0.25, G:0.25, T:0.29
Consensus pattern (69 bp):
CGACTAGCACTGGGCACAACTTTCGTCAGTTCATCTGACTAGTGCTAGGCACACATTCGTCGGTT
TATC
Found at i:9008109 original size:70 final size:69
Alignment explanation
Indices: 9008035--9008260 Score: 247
Period size: 70 Copynumber: 3.2 Consensus size: 69
9008025 TTGTATCATT
* * *
9008035 AACATGGCGGGAAGAACCCTTCCAACTTTAACATGGTGGGAGGAAGGCCCATTCTAAGCTTTGCA
1 AACATGGCGAGAAGAACCCTTGCAACTTTAACATGGTGAGAGGAAGGCCCATTCTAA-CTTTGCA
9008100 ACATC
65 ACATC
* * * *
9008105 AACATGGCAAGAAGAACCCTTGCAACTTTAACATGGTAAGAGG-AGGAACCATTTCAAACTTTGC
1 AACATGGCGAGAAGAACCCTTGCAACTTTAACATGGTGAGAGGAAGG-CCCA-TTCTAACTTTGC
**
9008169 AACGCC
64 AACATC
* * * * * *
9008175 AACATGGTGAGAAGAACCCTTGCAACTTTAACATGGCGAAAGGAAGGCCCATTTCGAATTTTACA
1 AACATGGCGAGAAGAACCCTTGCAACTTTAACATGGTGAGAGGAAGGCCCA-TTCTAACTTTGCA
*
9008240 CCATC
65 ACATC
* *
9008245 AACATGGTGGGAAGAA
1 AACATGGCGAGAAGAA
9008261 GTTTTGCAAC
Statistics
Matches: 131, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
69 3 0.02
70 120 0.92
71 8 0.06
ACGTcount: A:0.35, C:0.22, G:0.23, T:0.21
Consensus pattern (69 bp):
AACATGGCGAGAAGAACCCTTGCAACTTTAACATGGTGAGAGGAAGGCCCATTCTAACTTTGCAA
CATC
Found at i:9009856 original size:70 final size:68
Alignment explanation
Indices: 9009742--9009928 Score: 223
Period size: 70 Copynumber: 2.7 Consensus size: 68
9009732 TAATGACAGG
* * * *
9009742 TTAACATGGTGAGACGAGGGCTCATTCCTAACTTTGTAACATCAACATGACATGAAGAACTCTTG
1 TTAACATGGTGAGAGGAGGGCCCATTCCAAACTTTGTAACATCAACATGACAGGAAGAAC-CTT-
9009807 T-AAC
64 TAAAC
* * **
9009811 TGTAACATGGTGAGAGGAGGGCCCAATCCGAACTTTGTAACATCAACATGATGGGAAGAACCTTT
1 T-TAACATGGTGAGAGGAGGGCCCATTCCAAACTTTGTAACATCAACATGACAGGAAGAACCTTT
9009876 ACAAC
65 A-AAC
** *
9009881 TTCAACATGGTGAGAGGAATGCCCATTCCAAACATTGTAACATCAACA
1 TT-AACATGGTGAGAGGAGGGCCCATTCCAAACTTTGTAACATCAACA
9009929 AGGCAAAAAT
Statistics
Matches: 102, Mismatches: 12, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
68 1 0.01
69 5 0.05
70 96 0.94
ACGTcount: A:0.35, C:0.21, G:0.20, T:0.24
Consensus pattern (68 bp):
TTAACATGGTGAGAGGAGGGCCCATTCCAAACTTTGTAACATCAACATGACAGGAAGAACCTTTA
AAC
Found at i:9009948 original size:70 final size:70
Alignment explanation
Indices: 9009874--9010010 Score: 168
Period size: 70 Copynumber: 2.0 Consensus size: 70
9009864 GGAAGAACCT
* * * * *
9009874 TTACAACTTCAACATGGTGAGAGGAATG-CCCATTCCAAACATTGTAACATCAACAAGGCAAAAA
1 TTACAACTTCAACATGGCGAGA-AAAGGTCCAATTCCAAACATTGCAACATCAACAAGGCAAAAA
9009938 TAATCC
65 TAATCC
* * * * *
9009944 TTACAAGTTCAACATGGCGAGAAAAGGTCCAATTCCAAACTTTGCATCATCAACATGGCAAGAAT
1 TTACAACTTCAACATGGCGAGAAAAGGTCCAATTCCAAACATTGCAACATCAACAAGGCAAAAAT
9010009 AA
66 AA
9010011 ATTTTCCACC
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
69 3 0.05
70 53 0.95
ACGTcount: A:0.41, C:0.22, G:0.15, T:0.22
Consensus pattern (70 bp):
TTACAACTTCAACATGGCGAGAAAAGGTCCAATTCCAAACATTGCAACATCAACAAGGCAAAAAT
AATCC
Found at i:9010795 original size:58 final size:59
Alignment explanation
Indices: 9010686--9010833 Score: 171
Period size: 58 Copynumber: 2.6 Consensus size: 59
9010676 TTAAGGCGTT
* *
9010686 CAATGAAGGATTTT-AAGCTTAA--CGATTTTTTTTACCTTAACTTTTGTTTAAGTAATC
1 CAATGAAGGATTTTCAA-CTTAATGAGATTTTTTTTACCTTAACTTTTGCTTAAGTAATC
* * *
9010743 CATTGAAGGATTTTCAACTTAATGAGATTTTTTTT-CTTTAACTTTTGCTTAAGTCATC
1 CAATGAAGGATTTTCAACTTAATGAGATTTTTTTTACCTTAACTTTTGCTTAAGTAATC
** * *
9010801 CAAAAAAGGATTTTCAGCTTAATGA-ACTTTTTT
1 CAATGAAGGATTTTCAACTTAATGAGATTTTTTT
9010834 GTGTGTAAAG
Statistics
Matches: 78, Mismatches: 10, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
57 25 0.32
58 43 0.55
59 10 0.13
ACGTcount: A:0.30, C:0.13, G:0.12, T:0.45
Consensus pattern (59 bp):
CAATGAAGGATTTTCAACTTAATGAGATTTTTTTTACCTTAACTTTTGCTTAAGTAATC
Found at i:9013969 original size:45 final size:45
Alignment explanation
Indices: 9013871--9014122 Score: 400
Period size: 45 Copynumber: 5.6 Consensus size: 45
9013861 TTTGAGTACT
* *
9013871 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
9013917 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
*
9013962 TCTGATCAAGTGACAAAGTGATAAGTGATAGCCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
* * *
9014007 TCTGATCAAGTGCCGAAGTGATAAGTGGTAGCTTTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTA
9014053 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
* *
9014098 TCTGAT-TAGGGAC-AAGTGATAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTG
9014123 ATCATACATA
Statistics
Matches: 193, Mismatches: 12, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
43 12 0.06
44 5 0.03
45 103 0.53
46 73 0.38
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (45 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTA
Found at i:9014048 original size:91 final size:90
Alignment explanation
Indices: 9013871--9014122 Score: 400
Period size: 91 Copynumber: 2.8 Consensus size: 90
9013861 TTTGAGTACT
* *
9013871 TCTGATCAAGTGAAAAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAAGTGACAAAGT
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGC-CTAGCTACACTTATCTGATCAAGTGACAAAGT
9013936 GATAAGTGGTAGCCTAGCTACACTTA
65 GATAAGTGGTAGCCTAGCTACACTTA
* * *
9013962 TCTGATCAAGTGACAAAGTGATAAGTGATAGCCTAGCTACACTTATCTGATCAAGTGCCGAAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATCAAGTGACAAAGTG
*
9014027 ATAAGTGGTAGCTTTAGCTACACTTA
66 ATAAGTGGTAGC-CTAGCTACACTTA
* *
9014053 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGAT-TAGGGAC-AAGTG
1 TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATCAAGTGACAAAGTG
9014116 ATAAGTG
66 ATAAGTG
9014123 ATCATACATA
Statistics
Matches: 150, Mismatches: 10, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
89 12 0.08
90 46 0.31
91 92 0.61
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (90 bp):
TCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTAGCTACACTTATCTGATCAAGTGACAAAGTG
ATAAGTGGTAGCCTAGCTACACTTA
Found at i:9018268 original size:21 final size:21
Alignment explanation
Indices: 9018244--9018289 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
9018234 TGTTCGAAAA
*
9018244 ATACAAGTATGCAAAATTAAT
1 ATACAAGTATGCAAAATGAAT
9018265 ATACAAGTATGCAAAATGAAT
1 ATACAAGTATGCAAAATGAAT
9018286 ATAC
1 ATAC
9018290 TATACTTAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.52, C:0.11, G:0.11, T:0.26
Consensus pattern (21 bp):
ATACAAGTATGCAAAATGAAT
Found at i:9021955 original size:21 final size:19
Alignment explanation
Indices: 9021900--9021942 Score: 86
Period size: 19 Copynumber: 2.3 Consensus size: 19
9021890 AATCTTTAAG
9021900 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
9021919 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
9021938 GATAT
1 GATAT
9021943 ATGCAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.37, C:0.09, G:0.16, T:0.37
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:9021960 original size:19 final size:19
Alignment explanation
Indices: 9021901--9021961 Score: 70
Period size: 19 Copynumber: 3.1 Consensus size: 19
9021891 ATCTTTAAGG
*
9021901 ATATGCAATCTTAG-ATAT
1 ATATGCAATCTTAGAAGAT
9021919 GATATGCAATCTTAGATATGAT
1 -ATATGCAATCTTAGA-A-GAT
*
9021941 ATATGCAATTTTAGAAGAT
1 ATATGCAATCTTAGAAGAT
9021960 AT
1 AT
9021962 GATTTTGTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
19 19 0.51
20 1 0.03
21 15 0.41
22 2 0.05
ACGTcount: A:0.39, C:0.08, G:0.15, T:0.38
Consensus pattern (19 bp):
ATATGCAATCTTAGAAGAT
Found at i:9022226 original size:23 final size:23
Alignment explanation
Indices: 9022182--9022226 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
9022172 TCTTATTTTG
* *
9022182 TTGATTTGTGTATAATTTATTTA
1 TTGATTTGTATATAATTGATTTA
**
9022205 TTGATTTGTATATTGTTGATTT
1 TTGATTTGTATATAATTGATTT
9022227 CAATTCTCTT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (23 bp):
TTGATTTGTATATAATTGATTTA
Done.