Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 37 of 173
Found at i:10029680 original size:14 final size:15
Alignment explanation
Indices: 10029650--10029683 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
10029640 TTTAGCTCGA
10029650 TATAATATATCCATT
1 TATAATATATCCATT
*
10029665 TATAATAT-TTCATT
1 TATAATATATCCATT
10029679 TATAA
1 TATAA
10029684 AATGCTTAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (15 bp):
TATAATATATCCATT
Found at i:10031598 original size:67 final size:67
Alignment explanation
Indices: 10031490--10031619 Score: 190
Period size: 67 Copynumber: 1.9 Consensus size: 67
10031480 AAAATTGAGG
* *
10031490 CCAACTACAATGATATCGTGATACCGAGTATCAGGTATTATGAGACCGAAACCTCTAAAACTTTC
1 CCAACTACAATGATATCGCGATACCGAGTATCAGGTATTATGAGACCGAAACCCCTAAAACTTTC
10031555 AA
66 AA
* * * *
10031557 CCAACTACAATGATATCGCGATACTGAGTAAT-GGGTATTATGATACCGAGACCCCTAAAACTT
1 CCAACTACAATGATATCGCGATACCGAGT-ATCAGGTATTATGAGACCGAAACCCCTAAAACTT
10031620 CCAATCTCAA
Statistics
Matches: 56, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
67 54 0.96
68 2 0.04
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.25
Consensus pattern (67 bp):
CCAACTACAATGATATCGCGATACCGAGTATCAGGTATTATGAGACCGAAACCCCTAAAACTTTC
AA
Found at i:10031898 original size:25 final size:26
Alignment explanation
Indices: 10031854--10031903 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
10031844 AGGTTTGTTT
*
10031854 TCTTTTCATTTTTAAGTTAGATTTTC
1 TCTTTTCATTTTTAAATTAGATTTTC
10031880 TCTTTTC-TTTTTAAATTAGATTTT
1 TCTTTTCATTTTTAAATTAGATTTT
10031904 ATTTTTGTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.70
26 7 0.30
ACGTcount: A:0.20, C:0.10, G:0.06, T:0.64
Consensus pattern (26 bp):
TCTTTTCATTTTTAAATTAGATTTTC
Found at i:10037790 original size:10 final size:10
Alignment explanation
Indices: 10037775--10037800 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
10037765 TGTATTGACA
10037775 TGATATGGGT
1 TGATATGGGT
10037785 TGATATGGGT
1 TGATATGGGT
10037795 TGATAT
1 TGATAT
10037801 TGTTTATTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.23, C:0.00, G:0.35, T:0.42
Consensus pattern (10 bp):
TGATATGGGT
Found at i:10054774 original size:22 final size:23
Alignment explanation
Indices: 10054748--10054802 Score: 76
Period size: 22 Copynumber: 2.4 Consensus size: 23
10054738 AGGATATGTT
**
10054748 TGATATGTTATGTGATAT-ACTC
1 TGATATGTTATAAGATATGACTC
*
10054770 TGATATGCTATAAGATATGACTC
1 TGATATGTTATAAGATATGACTC
10054793 TGATATGTTA
1 TGATATGTTA
10054803 AGCAATATGA
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
22 15 0.54
23 13 0.46
ACGTcount: A:0.31, C:0.09, G:0.18, T:0.42
Consensus pattern (23 bp):
TGATATGTTATAAGATATGACTC
Found at i:10054812 original size:23 final size:21
Alignment explanation
Indices: 10054761--10054804 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 21
10054751 TATGTTATGT
10054761 GATAT-ACTCTGATATGCTATAA
1 GATATGACTCTGATATG-T-TAA
10054783 GATATGACTCTGATATGTTAA
1 GATATGACTCTGATATGTTAA
10054804 G
1 G
10054805 CAATATGATT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 4 0.19
22 6 0.29
23 11 0.52
ACGTcount: A:0.34, C:0.11, G:0.18, T:0.36
Consensus pattern (21 bp):
GATATGACTCTGATATGTTAA
Found at i:10062632 original size:19 final size:18
Alignment explanation
Indices: 10062589--10062632 Score: 56
Period size: 16 Copynumber: 2.5 Consensus size: 18
10062579 TGTGTTTCTT
*
10062589 TACTCAAGCCGAGCCACC
1 TACTCAAGCCGAGCCACA
10062607 T--TCAAGCCGAGCCATCA
1 TACTCAAGCCGAGCCA-CA
10062624 TACTCAAGC
1 TACTCAAGC
10062633 TATTCTGAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
16 13 0.59
17 2 0.09
18 1 0.05
19 6 0.27
ACGTcount: A:0.30, C:0.39, G:0.16, T:0.16
Consensus pattern (18 bp):
TACTCAAGCCGAGCCACA
Found at i:10066953 original size:25 final size:25
Alignment explanation
Indices: 10066893--10066990 Score: 76
Period size: 25 Copynumber: 4.0 Consensus size: 25
10066883 CTCTCAAGTC
10066893 ATATAACGGGAAGCTCATGTGAGCT
1 ATATAACGGGAAGCTCATGTGAGCT
* * * *
10066918 ATGTAATGGGAAGCTTAT-TCGGGCT
1 ATATAACGGGAAGCTCATGT-GAGCT
* **
10066943 GTATAACGGGAAGCTCATAAGAG-T
1 ATATAACGGGAAGCTCATGTGAGCT
* *
10066967 CATAT-TCAGGAAGCTCATGTGAGC
1 -ATATAACGGGAAGCTCATGTGAGC
10066991 CAATAATGGG
Statistics
Matches: 54, Mismatches: 15, Indels: 8
0.70 0.19 0.10
Matches are distributed among these distances:
24 16 0.30
25 38 0.70
ACGTcount: A:0.31, C:0.15, G:0.29, T:0.26
Consensus pattern (25 bp):
ATATAACGGGAAGCTCATGTGAGCT
Found at i:10075083 original size:17 final size:17
Alignment explanation
Indices: 10075043--10075084 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
10075033 TATTTATAAA
*
10075043 TAATATATTTTATTATT
1 TAATATATGTTATTATT
*
10075060 TATTATATGTTATT-TT
1 TAATATATGTTATTATT
10075076 TAAATATAT
1 T-AATATAT
10075085 ATTTATATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
16 3 0.14
17 18 0.86
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (17 bp):
TAATATATGTTATTATT
Found at i:10075095 original size:20 final size:19
Alignment explanation
Indices: 10075032--10075098 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 19
10075022 AGTTAAATAC
*
10075032 TTATTTATAAATAATATATT
1 TTATTTTTAAAT-ATATATT
*
10075052 TTATTATTT--AT-TATATG
1 TTATT-TTTAAATATATATT
10075069 TTATTTTTAAATATATATT
1 TTATTTTTAAATATATATT
10075088 TATATTTTTAA
1 T-TATTTTTAA
10075099 TTTGTGGTTT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
16 3 0.08
17 10 0.26
18 2 0.05
19 8 0.21
20 14 0.36
21 2 0.05
ACGTcount: A:0.37, C:0.00, G:0.01, T:0.61
Consensus pattern (19 bp):
TTATTTTTAAATATATATT
Found at i:10075458 original size:23 final size:24
Alignment explanation
Indices: 10075429--10075473 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
10075419 GTTTTATGGC
*
10075429 TTTTAGG-GTTAAGGGTGCAGGCT
1 TTTTAGGAGTTAAGGGTCCAGGCT
*
10075452 TTTTAGGAGTTAGGGGTCCAGG
1 TTTTAGGAGTTAAGGGTCCAGG
10075474 AAAATTTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.18, C:0.09, G:0.40, T:0.33
Consensus pattern (24 bp):
TTTTAGGAGTTAAGGGTCCAGGCT
Found at i:10075643 original size:124 final size:124
Alignment explanation
Indices: 10075515--10075769 Score: 361
Period size: 124 Copynumber: 2.1 Consensus size: 124
10075505 AAATAGTGGG
** * * * *
10075515 AAATCGCTTCTACTAGAATGCTATTTAAGAAGAAATTGTGAAATAGTGGCCTCGTGGACGCGATT
1 AAATCGCTGATACCAGAATGCTATATAAGAAGAAATTGTGAAATAGCGCCCTCGTGGACGCGATT
*
10075580 TCGCTACAG-TGGTCATGT-GAGAAATAATTTTTTTTGACGTTTTCTGAGGAAATAGTATA
66 TCGCTACAGTTGGTCATGTAG-GAAATAATTTTTTTTGACG-TTTCTGAGCAAATAGTATA
* * *
10075639 AAATCGCTGATACCAGGATGCTATATGAGAAGAAATTGTGAAATCGCGCCCTCGTGGACGCGATT
1 AAATCGCTGATACCAGAATGCTATATAAGAAGAAATTGTGAAATAGCGCCCTCGTGGACGCGATT
* * *
10075704 TCGCTACAGTTGGTCATGTAGGAAATAATTTTTTTTTACGTTTCTGAGCAAATAGTGTC
66 TCGCTACAGTTGGTCATGTAGGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATA
10075763 AAATCGC
1 AAATCGC
10075770 ACCCTCGTGG
Statistics
Matches: 116, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
124 88 0.76
125 27 0.23
126 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (124 bp):
AAATCGCTGATACCAGAATGCTATATAAGAAGAAATTGTGAAATAGCGCCCTCGTGGACGCGATT
TCGCTACAGTTGGTCATGTAGGAAATAATTTTTTTTGACGTTTCTGAGCAAATAGTATA
Found at i:10077601 original size:85 final size:85
Alignment explanation
Indices: 10077478--10077813 Score: 537
Period size: 85 Copynumber: 3.9 Consensus size: 85
10077468 TAAAATAAGA
*
10077478 TTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAAGTAGGTTAGGTTAGGGTT
1 TTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTAGGTTAGGTTAGGGTT
10077543 TTTAATTTAAGTAGGTTAGG
66 TTTAATTTAAGTAGGTTAGG
* **
10077563 TTAGGGTTTTTAATTTAATTAAAATAAGGTTAGAGTTTTTAATTTAATTAAATTAGGTTAGGGTT
1 TTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTAGGTTAGGTTAGGGTT
*
10077628 TTTAATTAAATTAGGTTAGGTTAGGG
66 TTTAA-T---TTAAG-TAGGTTA-GG
*
10077654 TTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTAGGTTAGGTTAGGATT
1 TTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTAGGTTAGGTTAGGGTT
10077719 TTTAATTTAAGTAGGTTAGG
66 TTTAATTTAAGTAGGTTAGG
* * *
10077739 TTAGGATTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTAGGTTAGTTTAGGGCT
1 TTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTAGGTTAGGTTAGGGTT
10077804 TTTAATTTAA
66 TTTAATTTAA
10077814 TTAAATTAGG
Statistics
Matches: 231, Mismatches: 14, Indels: 12
0.90 0.05 0.05
Matches are distributed among these distances:
85 139 0.60
86 8 0.03
87 4 0.02
89 4 0.02
90 8 0.03
91 68 0.29
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.47
Consensus pattern (85 bp):
TTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTAGGTTAGGTTAGGGTT
TTTAATTTAAGTAGGTTAGG
Found at i:10077743 original size:176 final size:176
Alignment explanation
Indices: 10077478--10077816 Score: 597
Period size: 176 Copynumber: 1.9 Consensus size: 176
10077468 TAAAATAAGA
*
10077478 TTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAAGTAGGTTAGGTTAGGGTT
1 TTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAAGTAGGTTAGGTTAGGATT
*
10077543 TTTAATTTAAGTAGGTTAGGTTAGGGTTTTTAATTTAATTAAAATAAGGTTAGAGTTTTTAATTT
66 TTTAATTTAAGTAGGTTAGGTTAGGATTTTTAATTTAATTAAAATAAGGTTAGAGTTTTTAATTT
*
10077608 AATTAAATTAGGTTAGGGTTTTTAATTAAATTAGGTTAGGTTAGGG
131 AATTAAATTAGGTTAGGGCTTTTAATTAAATTAGGTTAGGTTAGGG
*
10077654 TTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAATTAGGTTAGGTTAGGATT
1 TTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAAGTAGGTTAGGTTAGGATT
*
10077719 TTTAATTTAAGTAGGTTAGGTTAGGATTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTT
66 TTTAATTTAAGTAGGTTAGGTTAGGATTTTTAATTTAATTAAAATAAGGTTAGAGTTTTTAATTT
** * *
10077784 AATTAGGTTAGTTTAGGGCTTTTAATTTAATTA
131 AATTAAATTAGGTTAGGGCTTTTAATTAAATTA
10077817 AATTAGGGTT
Statistics
Matches: 154, Mismatches: 9, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
176 154 1.00
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.47
Consensus pattern (176 bp):
TTAGGGTTTTTAATTTAATTAAAATAAGGTTAGGGTTTTTAATTTAAGTAGGTTAGGTTAGGATT
TTTAATTTAAGTAGGTTAGGTTAGGATTTTTAATTTAATTAAAATAAGGTTAGAGTTTTTAATTT
AATTAAATTAGGTTAGGGCTTTTAATTAAATTAGGTTAGGTTAGGG
Found at i:10077822 original size:28 final size:28
Alignment explanation
Indices: 10077454--10077823 Score: 407
Period size: 28 Copynumber: 12.8 Consensus size: 28
10077444 GATGTCAAGT
* *
10077454 GTTTTTAATTTAATTAAAATAAGATTAGG
1 GTTTTTAATTTAATT-AAATTAGGTTAGG
*
10077483 GTTTTTAATTTAATTAAAATAAGGTTAGG
1 GTTTTTAATTTAATT-AAATTAGGTTAGG
* **
10077512 GTTTTTAATTTAAGTAGGTTAGGTTAGG
1 GTTTTTAATTTAATTAAATTAGGTTAGG
* **
10077540 GTTTTTAATTTAAGTAGGTTAGGTTAGG
1 GTTTTTAATTTAATTAAATTAGGTTAGG
* *
10077568 GTTTTTAATTTAATTAAAATAAGGTTAGA
1 GTTTTTAATTTAATT-AAATTAGGTTAGG
10077597 GTTTTTAATTTAATTAAATTAGGTTAGG
1 GTTTTTAATTTAATTAAATTAGGTTAGG
* *
10077625 GTTTTTAATTAAATTAGGTTAGGTTAGGGTTAGG
1 GTTTTTAATTTAATTA----A-ATTA-GGTTAGG
*
10077659 GTTTTTAATTTAATTAAAATAAGGTTAGG
1 GTTTTTAATTTAATT-AAATTAGGTTAGG
**
10077688 GTTTTTAATTTAATTAGGTTAGGTTAGG
1 GTTTTTAATTTAATTAAATTAGGTTAGG
* * **
10077716 ATTTTTAATTTAAGTAGGTTAGGTTAGG
1 GTTTTTAATTTAATTAAATTAGGTTAGG
* *
10077744 ATTTTTAATTTAATTAAAATAAGGTTAGG
1 GTTTTTAATTTAATT-AAATTAGGTTAGG
** *
10077773 GTTTTTAATTTAATTAGGTTAGTTTAGG
1 GTTTTTAATTTAATTAAATTAGGTTAGG
*
10077801 GCTTTTAATTTAATTAAATTAGG
1 GTTTTTAATTTAATTAAATTAGG
10077824 GTTTTTAATT
Statistics
Matches: 297, Mismatches: 35, Indels: 19
0.85 0.10 0.05
Matches are distributed among these distances:
28 156 0.53
29 112 0.38
30 2 0.01
31 1 0.00
32 1 0.00
33 3 0.01
34 21 0.07
35 1 0.00
ACGTcount: A:0.32, C:0.00, G:0.21, T:0.47
Consensus pattern (28 bp):
GTTTTTAATTTAATTAAATTAGGTTAGG
Found at i:10077842 original size:17 final size:18
Alignment explanation
Indices: 10077809--10077843 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
10077799 GGGCTTTTAA
*
10077809 TTTAATTAAATTAGGGTT
1 TTTAATTAAAGTAGGGTT
10077827 TTTAATT-AAGTAGGGTT
1 TTTAATTAAAGTAGGGTT
10077844 AGGGATTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.31, C:0.00, G:0.20, T:0.49
Consensus pattern (18 bp):
TTTAATTAAAGTAGGGTT
Found at i:10077845 original size:23 final size:23
Alignment explanation
Indices: 10077752--10077855 Score: 75
Period size: 23 Copynumber: 4.3 Consensus size: 23
10077742 GGATTTTTAA
* *
10077752 TTTAATTAAAATAAGGTTAGGGTT
1 TTTAATT-AATTAGGGTTAGGGTT
*
10077776 TTTAATTTAATTAGGTTAGTTTAGGGCT
1 TTTAA-TTAATTAGG---G-TTAGGGTT
**
10077804 TTTAATTTAATTA-AATTAGGGTT
1 TTTAA-TTAATTAGGGTTAGGGTT
* *
10077827 TTTAATTAAGTAGGGTTAGGGAT
1 TTTAATTAATTAGGGTTAGGGTT
10077850 TTTAAT
1 TTTAAT
10077856 CAAATAATGT
Statistics
Matches: 64, Mismatches: 10, Indels: 13
0.74 0.11 0.15
Matches are distributed among these distances:
22 6 0.09
23 25 0.39
24 10 0.16
25 2 0.03
27 1 0.02
28 20 0.31
ACGTcount: A:0.32, C:0.01, G:0.20, T:0.47
Consensus pattern (23 bp):
TTTAATTAATTAGGGTTAGGGTT
Found at i:10080257 original size:22 final size:22
Alignment explanation
Indices: 10080227--10080268 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
10080217 ATTTGGAGAT
*
10080227 TTTTTGAAGGAAATTGAGAGGA
1 TTTTGGAAGGAAATTGAGAGGA
*
10080249 TTTTGGAAGGAATTTGAGAG
1 TTTTGGAAGGAAATTGAGAG
10080269 TTTGAGAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33
Consensus pattern (22 bp):
TTTTGGAAGGAAATTGAGAGGA
Found at i:10080300 original size:22 final size:23
Alignment explanation
Indices: 10080270--10080339 Score: 92
Period size: 22 Copynumber: 3.2 Consensus size: 23
10080260 ATTTGAGAGT
10080270 TTGAGAG-AATTTTAGAAGGAAA
1 TTGAGAGAAATTTTAGAAGGAAA
* *
10080292 TTGATAGAAATTTTA-AAGGGAA
1 TTGAGAGAAATTTTAGAAGGAAA
*
10080314 TTGAGAGAAATTTT-GAAAGAAA
1 TTGAGAGAAATTTTAGAAGGAAA
10080336 TTGA
1 TTGA
10080340 TATTGAATTT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
22 34 0.83
23 7 0.17
ACGTcount: A:0.46, C:0.00, G:0.24, T:0.30
Consensus pattern (23 bp):
TTGAGAGAAATTTTAGAAGGAAA
Found at i:10080318 original size:52 final size:51
Alignment explanation
Indices: 10080218--10080320 Score: 120
Period size: 52 Copynumber: 2.0 Consensus size: 51
10080208 TTAATATGGA
* * * *
10080218 TTTGGAGATTTTTTGAAGGAAATTGAGAGGATTTTGGAAGGAATTTGAGAG
1 TTTGGAGAATTTTAGAAGGAAATTGAGAGAATTTTGAAAGGAATTTGAGAG
*
10080269 TTTGAGAGAATTTTAGAAGGAAATTGATAGAAATTTT-AAAGGGAA-TTGAGAG
1 TTTG-GAGAATTTTAGAAGGAAATTGAGAG-AATTTTGAAA-GGAATTTGAGAG
10080321 AAATTTTGAA
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
51 4 0.09
52 31 0.70
53 9 0.20
ACGTcount: A:0.37, C:0.00, G:0.30, T:0.33
Consensus pattern (51 bp):
TTTGGAGAATTTTAGAAGGAAATTGAGAGAATTTTGAAAGGAATTTGAGAG
Found at i:10089377 original size:36 final size:36
Alignment explanation
Indices: 10089337--10089414 Score: 129
Period size: 36 Copynumber: 2.2 Consensus size: 36
10089327 CTCTGGAATC
*
10089337 AACACAACCTAAACTTGATACAAAAGAGAATCCCAA
1 AACACAACCTAAACCTGATACAAAAGAGAATCCCAA
**
10089373 AACACAACCTAAACCTGATACAAAAGAGAATCCTGA
1 AACACAACCTAAACCTGATACAAAAGAGAATCCCAA
10089409 AACACA
1 AACACA
10089415 GCCGGTGCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.53, C:0.26, G:0.09, T:0.13
Consensus pattern (36 bp):
AACACAACCTAAACCTGATACAAAAGAGAATCCCAA
Found at i:10102371 original size:8 final size:8
Alignment explanation
Indices: 10102358--10102384 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
10102348 AAAAAACTCT
10102358 ATTTGAGC
1 ATTTGAGC
10102366 ATTTGAGC
1 ATTTGAGC
10102374 ATTTGAGC
1 ATTTGAGC
10102382 ATT
1 ATT
10102385 AGTCGATTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.26, C:0.11, G:0.22, T:0.41
Consensus pattern (8 bp):
ATTTGAGC
Found at i:10107070 original size:9 final size:9
Alignment explanation
Indices: 10107056--10107083 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
10107046 TTTTGTTACA
10107056 ACAATTAAT
1 ACAATTAAT
10107065 ACAATTAAT
1 ACAATTAAT
10107074 ACAATTAAT
1 ACAATTAAT
10107083 A
1 A
10107084 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:10107135 original size:68 final size:68
Alignment explanation
Indices: 10107026--10107235 Score: 388
Period size: 68 Copynumber: 3.1 Consensus size: 68
10107016 TCAAGTTTGT
*
10107026 TTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
10107091 AAA
66 AAA
10107094 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
10107159 AAA
66 AAA
10107162 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
1 TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
*
10107225 AAT
66 AAA
10107228 TTTACTAA
1 TTTACTAA
10107236 CAATTAATTT
Statistics
Matches: 140, Mismatches: 2, Indels: 2
0.97 0.01 0.01
Matches are distributed among these distances:
66 27 0.19
67 1 0.01
68 112 0.80
ACGTcount: A:0.46, C:0.09, G:0.05, T:0.40
Consensus pattern (68 bp):
TTTACTAATCAAATGTTAGATTTTATTACAACAATTAATACAATTAATACAATTAATAATTTGAT
AAA
Found at i:10107136 original size:9 final size:9
Alignment explanation
Indices: 10107124--10107151 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
10107114 TTTTATTACA
10107124 ACAATTAAT
1 ACAATTAAT
10107133 ACAATTAAT
1 ACAATTAAT
10107142 ACAATTAAT
1 ACAATTAAT
10107151 A
1 A
10107152 ATTTGATAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:10107245 original size:16 final size:16
Alignment explanation
Indices: 10107224--10107265 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
10107214 AATAATTTGA
*
10107224 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
10107240 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
10107256 TAGTTTTAAT
1 TAATTTTAAT
10107266 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:10107249 original size:22 final size:23
Alignment explanation
Indices: 10107239--10107300 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
10107229 TTACTAACAA
* * *
10107239 TTAATTTTAAT-AACAATTAGTT
1 TTAATTTTAATAAAAAAATAATT
*
10107261 TTAATTTTATTAAAAAAATAATT
1 TTAATTTTAATAAAAAAATAATT
*
10107284 TTAATTTTAATTAAAAA
1 TTAATTTTAATAAAAAA
10107301 TGGGTCGGGC
Statistics
Matches: 33, Mismatches: 6, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 10 0.30
23 23 0.70
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTAATTTTAATAAAAAAATAATT
Found at i:10110858 original size:5 final size:5
Alignment explanation
Indices: 10110804--10110840 Score: 65
Period size: 5 Copynumber: 7.2 Consensus size: 5
10110794 TTCTATATGA
10110804 ATTTT ACTTTT ATTTT ATTTT ATTTT ATTTT ATTTT A
1 ATTTT A-TTTT ATTTT ATTTT ATTTT ATTTT ATTTT A
10110841 CCACTATATT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.76
Consensus pattern (5 bp):
ATTTT
Found at i:10131813 original size:45 final size:45
Alignment explanation
Indices: 10131726--10131913 Score: 186
Period size: 45 Copynumber: 4.2 Consensus size: 45
10131716 AATAATAACA
* * * * * *
10131726 GATACACGGTGG-ATCAACACATAGC-ACCACCCTTATAGTCAAT
1 GATACCCGGTGGAATCAGCACACAACAACCACCTTTATAATCAAT
* * * * *
10131769 GATACTCAGTGGAATCAGCAGATAACAACCA-CTTTCCTAATCAAT
1 GATACCCGGTGGAATCAGCACACAACAACCACCTTT-ATAATCAAT
*
10131814 -AGTACCCGGTGGAATCAGCACACAGCAACCACCTTTATAATCAAT
1 GA-TACCCGGTGGAATCAGCACACAACAACCACCTTTATAATCAAT
* * *
10131859 GATACCCGGTGGAATCAACACACAGCAGCCACCTTTATAATCAAT
1 GATACCCGGTGGAATCAGCACACAACAACCACCTTTATAATCAAT
*
10131904 GGTACCCGGT
1 GATACCCGGT
10131914 ACACATAGTA
Statistics
Matches: 122, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
43 10 0.08
44 14 0.11
45 93 0.76
46 5 0.04
ACGTcount: A:0.35, C:0.28, G:0.16, T:0.21
Consensus pattern (45 bp):
GATACCCGGTGGAATCAGCACACAACAACCACCTTTATAATCAAT
Found at i:10131909 original size:90 final size:88
Alignment explanation
Indices: 10131732--10131913 Score: 213
Period size: 90 Copynumber: 2.0 Consensus size: 88
10131722 AACAGATACA
* * * * * *
10131732 CGGTGGATCAACACATAGCACCACCCTTATAGTCAATGATACTCAGTGGAATCAGCAGATAACAA
1 CGGTGGATCAACACACAGCACCACCCTTATAATCAATGATACCCAGTGGAATCAACACACAACAA
*
10131797 CCACTTTCCTAATCAATAGTACC
66 CCACTTTCATAATCAATAGTACC
* * * *
10131820 CGGTGGAATCAGCACACAGCAACCACCTTTATAATCAATGATACCCGGTGGAATCAACACACAGC
1 CGGTGG-ATCAACACACAGC-ACCACCCTTATAATCAATGATACCCAGTGGAATCAACACACAAC
* *
10131885 AGCCACCTTT-ATAATCAATGGTACC
64 AACCA-CTTTCATAATCAATAGTACC
10131910 CGGT
1 CGGT
10131914 ACACATAGTA
Statistics
Matches: 78, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
88 6 0.08
89 11 0.14
90 57 0.73
91 4 0.05
ACGTcount: A:0.34, C:0.28, G:0.16, T:0.21
Consensus pattern (88 bp):
CGGTGGATCAACACACAGCACCACCCTTATAATCAATGATACCCAGTGGAATCAACACACAACAA
CCACTTTCATAATCAATAGTACC
Found at i:10133333 original size:6 final size:6
Alignment explanation
Indices: 10133322--10133366 Score: 72
Period size: 6 Copynumber: 7.3 Consensus size: 6
10133312 TGGTTTTCTC
*
10133322 AAAATG AAAATG AAAATG AAAACG AAAATG AAAATG AGAAATG AA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAATG A-AAATG AA
10133367 TTCATTTAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
6 30 0.83
7 6 0.17
ACGTcount: A:0.67, C:0.02, G:0.18, T:0.13
Consensus pattern (6 bp):
AAAATG
Found at i:10133657 original size:113 final size:114
Alignment explanation
Indices: 10133468--10133694 Score: 366
Period size: 113 Copynumber: 2.0 Consensus size: 114
10133458 CATGTGATCA
* * *
10133468 TAGTGAACAAGTTGAGTAGTGAAATATTAAACATATTTTCTCAAAAAAAATTTATTAGGGGTAAA
1 TAGTGAACAAGCTGAATAGTAAAATATTAAACATATTTTCTC-AAAAAAATTTATTAGGGGTAAA
* *
10133533 AACATCATAATTTTACCTAGGGTAAAATTAGGACGAGAAAATTATTTAAT
65 AACATCATAATTTTACCTAGGATAAAATGAGGACGAGAAAATTATTTAAT
* *
10133583 TAGTGAACAAGCTGAATAGTAAAATATTAAATATATTTTCTC-AAAAATTTTATTAGGGGTAAAA
1 TAGTGAACAAGCTGAATAGTAAAATATTAAACATATTTTCTCAAAAAAATTTATTAGGGGTAAAA
*
10133647 TCATCATAATTTTACCTAGGATAAAATGAGGACGAGAAAATTATTTAA
66 ACATCATAATTTTACCTAGGATAAAATGAGGACGAGAAAATTATTTAA
10133695 CTAAATATAA
Statistics
Matches: 104, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
113 66 0.63
115 38 0.37
ACGTcount: A:0.44, C:0.08, G:0.15, T:0.33
Consensus pattern (114 bp):
TAGTGAACAAGCTGAATAGTAAAATATTAAACATATTTTCTCAAAAAAATTTATTAGGGGTAAAA
ACATCATAATTTTACCTAGGATAAAATGAGGACGAGAAAATTATTTAAT
Found at i:10135101 original size:163 final size:163
Alignment explanation
Indices: 10134831--10135130 Score: 415
Period size: 163 Copynumber: 1.8 Consensus size: 163
10134821 ATTGTTTAAT
**
10134831 TCTTATTGGTTCTTTAGTTGTGCTCTTTCGAACCCAAGTTCCTTTACCCTCAGTTAAAAAATCGA
1 TCTTATTGGTTCTTTAGTTGTGCTCTTTCGAACCCAAGTTCCTCAACCCTCAGTTAAAAAATCGA
* * *
10134896 TGATCGCTTCATAATTCACCTCTTTTTCATGTAAGTTTTCATAAAAATCCAGGTTATACCAAGGT
66 TGATCGCATCATAATTCACCTCTTCTTCATGTAAGTTTTCATAAAAATCCAGGTTATACCAACGT
*
10134961 TTCTTATGGACGGCTTCGATCACAATTAGAGAA
131 GTCTTATGGACGGCTTCGATCACAATTAGAGAA
* * * * *
10134994 TCTTATTGGTTTTTTAGTTACG-GCT-TTTCGAACCTAATTTTCTCAACCTTCAGTTAAAAAATC
1 TCTTATTGGTTCTTTAGTT--GTGCTCTTTCGAACCCAAGTTCCTCAACCCTCAGTTAAAAAATC
* * * ** *
10135057 GATGATCTCATCATAATTTACCTCTTCTTCGTGTAAGTTTTCATAAAAATCTGGGTTATAGCAAC
64 GATGATCGCATCATAATTCACCTCTTCTTCATGTAAGTTTTCATAAAAATCCAGGTTATACCAAC
10135122 GTGTCTTAT
129 GTGTCTTAT
10135131 AGTTATCTTT
Statistics
Matches: 118, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
163 114 0.97
164 3 0.03
165 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.40
Consensus pattern (163 bp):
TCTTATTGGTTCTTTAGTTGTGCTCTTTCGAACCCAAGTTCCTCAACCCTCAGTTAAAAAATCGA
TGATCGCATCATAATTCACCTCTTCTTCATGTAAGTTTTCATAAAAATCCAGGTTATACCAACGT
GTCTTATGGACGGCTTCGATCACAATTAGAGAA
Found at i:10150120 original size:23 final size:22
Alignment explanation
Indices: 10150068--10150120 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
10150058 TCCACGTCTT
*
10150068 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
10150090 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
10150113 TTTCTTTT
1 TTTCTTTT
10150121 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:10153105 original size:185 final size:186
Alignment explanation
Indices: 10152778--10153145 Score: 585
Period size: 185 Copynumber: 2.0 Consensus size: 186
10152768 GAAAACAAAG
10152778 AGATCAAAGGCATACTCGAGAAGGTAGTTTGCCCAAACCAACGAGATTGGTCCAAAAGACTGGAT
1 AGATCAAAGGCATACTCGAGAAGGTAGTTTGCCCAAACCAACGAGATTGGTCCAAAAGACTGGAT
* * * * *
10152843 GATGCTTTATTGTCCTACAGGATAGCATAAAAGACACCTTTAGGGATGTCACCCTATAGGTTGGT
66 GATGCTTTATGGGCCTACAGGATAGCATAAAAGACACATTTAGGGATGTCACCCTAGAGGTTGAT
*
10152908 CTTTGGGAAAGCCTGTCATCTGCCCTTAGAGTTAGAACACAAATCTTACTAGGCTC
131 CTTTGGGAAAGCCTGTCATCTGCCCTTAAAGTTAGAACACAAATCTTACTAGGCTC
*** * *
10152964 AGATCAAAGGCATACTCGAGAAGGTAGTTTGCTTGAACCGACGAGATTGGTCCAAAAGATTGG-T
1 AGATCAAAGGCATACTCGAGAAGGTAGTTTGCCCAAACCAACGAGATTGGTCCAAAAGACTGGAT
* * * *
10153028 GGTGCTTTATGGGCCTATAGGATAGCATACAAGCCACATTTAGGGATGTCACCCTAGAGGTTGAT
66 GATGCTTTATGGGCCTACAGGATAGCATAAAAGACACATTTAGGGATGTCACCCTAGAGGTTGAT
*
10153093 CTTTGGGAAAGCCTGTCATCTGCCTTTAAAGTTAGAACACAAATCTTACTAGG
131 CTTTGGGAAAGCCTGTCATCTGCCCTTAAAGTTAGAACACAAATCTTACTAGG
10153146 TTCTCCAAGA
Statistics
Matches: 166, Mismatches: 16, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
185 108 0.65
186 58 0.35
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (186 bp):
AGATCAAAGGCATACTCGAGAAGGTAGTTTGCCCAAACCAACGAGATTGGTCCAAAAGACTGGAT
GATGCTTTATGGGCCTACAGGATAGCATAAAAGACACATTTAGGGATGTCACCCTAGAGGTTGAT
CTTTGGGAAAGCCTGTCATCTGCCCTTAAAGTTAGAACACAAATCTTACTAGGCTC
Found at i:10153957 original size:22 final size:19
Alignment explanation
Indices: 10153932--10153973 Score: 57
Period size: 22 Copynumber: 2.1 Consensus size: 19
10153922 TGATAATCAT
10153932 TAATATATAATTATATCTATTA
1 TAATATAT-ATTA-AT-TATTA
10153954 TAATATATATTAATTATTA
1 TAATATATATTAATTATTA
10153973 T
1 T
10153974 CAACTTTGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 6 0.30
20 2 0.10
21 4 0.20
22 8 0.40
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (19 bp):
TAATATATATTAATTATTA
Found at i:10154514 original size:21 final size:20
Alignment explanation
Indices: 10154490--10154531 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 20
10154480 TCACACCGCG
10154490 CCTTG-CTACTCGCACCAACAC
1 CCTTGCCTA-TCGCACC-ACAC
10154511 CCTTGCCTATCGCACCACAC
1 CCTTGCCTATCGCACCACAC
10154531 C
1 C
10154532 ATCAAGACAC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 12 0.60
22 3 0.15
ACGTcount: A:0.21, C:0.50, G:0.10, T:0.19
Consensus pattern (20 bp):
CCTTGCCTATCGCACCACAC
Found at i:10154955 original size:3 final size:3
Alignment explanation
Indices: 10154947--10154971 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
10154937 AAGGATCCCA
10154947 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
10154972 TCCCATAGAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:10157158 original size:21 final size:23
Alignment explanation
Indices: 10157127--10157171 Score: 67
Period size: 22 Copynumber: 2.0 Consensus size: 23
10157117 ATTATGTGTA
10157127 TTAATTTTTAATATAA-TTAATT
1 TTAATTTTTAATATAATTTAATT
*
10157149 TTAA-TTTTAATCTAATTTAATT
1 TTAATTTTTAATATAATTTAATT
10157171 T
1 T
10157172 GGGTTAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 10 0.48
22 11 0.52
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (23 bp):
TTAATTTTTAATATAATTTAATT
Found at i:10157159 original size:16 final size:16
Alignment explanation
Indices: 10157126--10157171 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
10157116 GATTATGTGT
*
10157126 ATTAATTTTTAA-TATA
1 ATTAA-TTTTAATTTTA
10157142 ATTAATTTTAATTTTA
1 ATTAATTTTAATTTTA
10157158 ATCTAA-TTTAATTT
1 AT-TAATTTTAATTT
10157172 GGGTTAAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
15 6 0.22
16 18 0.67
17 3 0.11
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (16 bp):
ATTAATTTTAATTTTA
Found at i:10158538 original size:5 final size:5
Alignment explanation
Indices: 10158528--10158552 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
10158518 GCATTGGAAC
10158528 TTTTA TTTTA TTTTA TTTTA TTTTA
1 TTTTA TTTTA TTTTA TTTTA TTTTA
10158553 CTTTGTTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
TTTTA
Found at i:10161560 original size:17 final size:16
Alignment explanation
Indices: 10161538--10161569 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
10161528 TTATAGATAA
10161538 TTGGAAGCTCGATCGAT
1 TTGGAAGCTCG-TCGAT
10161555 TTGGAAGCTCGTCGA
1 TTGGAAGCTCGTCGA
10161570 AGATCTATAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.22, C:0.19, G:0.31, T:0.28
Consensus pattern (16 bp):
TTGGAAGCTCGTCGAT
Found at i:10165811 original size:73 final size:73
Alignment explanation
Indices: 10165692--10165838 Score: 276
Period size: 73 Copynumber: 2.0 Consensus size: 73
10165682 ATAGATTTCA
10165692 TTTATAGGCTAGGTAGGGGGTGAGTATTATTTTAAACATATTGGCACAGCAAATTAAAAGAATGA
1 TTTATAGGCTAGGTAGGGGGTGAGTATTATTTTAAACATATTGGCACAGCAAATTAAAAGAATGA
10165757 TATAGTGG
66 TATAGTGG
* *
10165765 TTTATAGGCTAGGTAGTGGGTGAGTATTATTTTAAACCTATTGGCACAGCAAATTAAAAGAATGA
1 TTTATAGGCTAGGTAGGGGGTGAGTATTATTTTAAACATATTGGCACAGCAAATTAAAAGAATGA
10165830 TATAGTGG
66 TATAGTGG
10165838 T
1 T
10165839 AGCTGCTTCA
Statistics
Matches: 72, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.35, C:0.07, G:0.25, T:0.33
Consensus pattern (73 bp):
TTTATAGGCTAGGTAGGGGGTGAGTATTATTTTAAACATATTGGCACAGCAAATTAAAAGAATGA
TATAGTGG
Found at i:10168485 original size:16 final size:18
Alignment explanation
Indices: 10168464--10168497 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10168454 TATAATTCTA
10168464 TTTA-TTAA-AAAATATT
1 TTTATTTAATAAAATATT
10168480 TTTATTTAATAAAATATT
1 TTTATTTAATAAAATATT
10168498 ATTACTATAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.25
17 4 0.25
18 8 0.50
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (18 bp):
TTTATTTAATAAAATATT
Found at i:10169050 original size:21 final size:22
Alignment explanation
Indices: 10169014--10169055 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
10169004 ATTTAACATC
10169014 TTGGGTTTAAAAGTTTAGGGTA
1 TTGGGTTTAAAAGTTTAGGGTA
* *
10169036 TTGGG-TTAAAGGTTTGGGGT
1 TTGGGTTTAAAAGTTTAGGGT
10169056 CTAAGGTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.21, C:0.00, G:0.38, T:0.40
Consensus pattern (22 bp):
TTGGGTTTAAAAGTTTAGGGTA
Found at i:10169472 original size:222 final size:220
Alignment explanation
Indices: 10169088--10169501 Score: 605
Period size: 222 Copynumber: 1.9 Consensus size: 220
10169078 TTATTTCTAA
* ** * *
10169088 TTAATTATGTTTAAATAAAGTTGTTAGTATTTATTTATAAGTCTCCCAATGTTTTTTTTATTTAA
1 TTAATTATATTTAAATAAAGTAATTAGTATTTATTTATAAATCTCCCAATATTTTTTTTATTTAA
* * * * *
10169153 TGATGAAATGTCATGCTATTATTCATCGATGATGTGTGAGACTTATACACTAACAGTGCATCAAA
66 TGATGAAATGCCATGCTATTATTCATCGATGATGCGTGAGACTTATACACCAACAATGAATCAAA
*
10169218 TATTTTCTCATATTTAAAACTTAAAAAATTAAATAAATGAGACATTTGTCACTATTTTAACATTG
131 TATTTTCTCATATTTAAAACTTAAAAAATTAAATAAATGAGACATTTATCACTATTTTAACATTG
10169283 GTATTTATTTATAATTAATTATTAT
196 GTATTTATTTATAATTAATTATTAT
* * *
10169308 TTAATTATATTTAAATAAAGTAATTAGTATTTATTTATAAATCTCTCACTATTTTTTGTTTTTGT
1 TTAATTATATTTAAATAAAGTAATTAGTATTTATTTATAAATCTCCCAATATTTTTT-TTATT-T
* * * *
10169373 AACT-ATGAGATGCCATGTTATTATTTATCGATGGTGCGTGAGACTTATACACCAACAATGAATC
64 AA-TGATGAAATGCCATGCTATTATTCATCGATGATGCGTGAGACTTATACACCAACAATGAATC
* * *
10169437 GAATATTTTCTCATATTTAAAAGTTAAAAAATTAAATAAATGGGACATTTATCACTATTTTAACA
128 AAATATTTTCTCATATTTAAAACTTAAAAAATTAAATAAATGAGACATTTATCACTATTTTAACA
10169502 CTTTGAAGTG
Statistics
Matches: 170, Mismatches: 21, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
220 50 0.29
221 4 0.02
222 115 0.68
223 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.11, T:0.43
Consensus pattern (220 bp):
TTAATTATATTTAAATAAAGTAATTAGTATTTATTTATAAATCTCCCAATATTTTTTTTATTTAA
TGATGAAATGCCATGCTATTATTCATCGATGATGCGTGAGACTTATACACCAACAATGAATCAAA
TATTTTCTCATATTTAAAACTTAAAAAATTAAATAAATGAGACATTTATCACTATTTTAACATTG
GTATTTATTTATAATTAATTATTAT
Found at i:10169760 original size:30 final size:26
Alignment explanation
Indices: 10169725--10169794 Score: 77
Period size: 30 Copynumber: 2.5 Consensus size: 26
10169715 AATAAACAGG
*
10169725 AAATTAGGACAATATGTTGTTTTTGAAAA
1 AAATTAGGAAAATAT-TT-TTTTT-AAAA
*
10169754 ATAATTAAGAAAATATTTTTTTTAAAA
1 A-AATTAGGAAAATATTTTTTTTAAAA
*
10169781 AAAATAGGAAAATA
1 AAATTAGGAAAATA
10169795 GGTCATTTTT
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 11 0.31
27 5 0.14
28 5 0.14
29 3 0.08
30 12 0.33
ACGTcount: A:0.51, C:0.01, G:0.11, T:0.36
Consensus pattern (26 bp):
AAATTAGGAAAATATTTTTTTTAAAA
Found at i:10169774 original size:27 final size:26
Alignment explanation
Indices: 10169744--10169794 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
10169734 CAATATGTTG
*
10169744 TTTTTGAAAAATAATTAAGAAAATATT
1 TTTTTGAAAAA-AAATAAGAAAATATT
* *
10169771 TTTTTTAAAAAAAATAGGAAAATA
1 TTTTTGAAAAAAAATAAGAAAATA
10169795 GGTCATTTTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 11 0.52
27 10 0.48
ACGTcount: A:0.55, C:0.00, G:0.08, T:0.37
Consensus pattern (26 bp):
TTTTTGAAAAAAAATAAGAAAATATT
Found at i:10174133 original size:6 final size:6
Alignment explanation
Indices: 10174113--10174162 Score: 73
Period size: 6 Copynumber: 8.3 Consensus size: 6
10174103 AAGGTAACGT
* * *
10174113 TGGAGA TGAAGA TGGAAA TGGAGA TAGAGA TGGAGA TGGAGA TGGAGA
1 TGGAGA TGGAGA TGGAGA TGGAGA TGGAGA TGGAGA TGGAGA TGGAGA
10174161 TG
1 TG
10174163 ATGATAATGA
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.38, C:0.00, G:0.44, T:0.18
Consensus pattern (6 bp):
TGGAGA
Found at i:10175621 original size:41 final size:41
Alignment explanation
Indices: 10175496--10175621 Score: 189
Period size: 41 Copynumber: 3.1 Consensus size: 41
10175486 CCGGCCTCCC
* *
10175496 GATTCAGTTCACCGGCACTTAGCCTGCTAGGCTTATAACCC
1 GATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCT
* * *
10175537 AATTCAGATCTCCGGCACTTAGCCTGCTAGGCTTATAAACT
1 GATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCT
* *
10175578 GATTCAGATCACCGGCGCTTAGCCTGCTAGGCTTATAGCCT
1 GATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCT
10175619 GAT
1 GAT
10175622 AATCTCAGAT
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 75 1.00
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.28
Consensus pattern (41 bp):
GATTCAGATCACCGGCACTTAGCCTGCTAGGCTTATAACCT
Found at i:10175861 original size:64 final size:63
Alignment explanation
Indices: 10175737--10175917 Score: 253
Period size: 64 Copynumber: 2.9 Consensus size: 63
10175727 GCAAACAAAC
* *
10175737 ATTCGAACCACATATGTA-T-AATTTACA-ACATTAAAATTCAGTTCAAAGAA-TTTGTAACCTA
1 ATTCGAACCACATATGTATTAAAATT-CATACATT-AAATTCAGCTC-AAGAACTTTGTAACCTA
10175798 T
63 T
10175799 ATTCGAACCACATATGTATGTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
1 ATTCGAACCACATATGTAT-TAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
* *
10175863 ATTTGAACCACATATGTATACAAAATTCATACATTAAATTCAGCTCAAGAACTTT
1 ATTCGAACCACATATGTAT-TAAAATTCATACATTAAATTCAGCTCAAGAACTTT
10175918 AAATATATAT
Statistics
Matches: 109, Mismatches: 5, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
62 18 0.17
63 5 0.05
64 77 0.71
65 9 0.08
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (63 bp):
ATTCGAACCACATATGTATTAAAATTCATACATTAAATTCAGCTCAAGAACTTTGTAACCTAT
Found at i:10179724 original size:18 final size:18
Alignment explanation
Indices: 10179703--10179738 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
10179693 TTGTTTTCAG
*
10179703 CTTCCTCTTCATTCTCAA
1 CTTCCTCTTCATTATCAA
*
10179721 CTTCCTTTTCATTATCAA
1 CTTCCTCTTCATTATCAA
10179739 ACCTAGTTGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.33, G:0.00, T:0.47
Consensus pattern (18 bp):
CTTCCTCTTCATTATCAA
Found at i:10183801 original size:9 final size:9
Alignment explanation
Indices: 10183789--10183853 Score: 53
Period size: 10 Copynumber: 6.9 Consensus size: 9
10183779 TTAAATTTTA
10183789 ATAAAAAAT
1 ATAAAAAAT
10183798 AT-AAAAAT
1 ATAAAAAAT
* *
10183806 ATTAAAACT
1 ATAAAAAAT
10183815 -TAGAAAAAT
1 ATA-AAAAAT
10183824 ATATAAAAAT
1 ATA-AAAAAT
10183834 CATAAAAAAATT
1 -AT-AAAAAA-T
10183846 ATAAAAAA
1 ATAAAAAA
10183854 ATTGTAAAAG
Statistics
Matches: 46, Mismatches: 4, Indels: 11
0.75 0.07 0.18
Matches are distributed among these distances:
8 9 0.20
9 12 0.26
10 14 0.30
11 9 0.20
12 2 0.04
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.25
Consensus pattern (9 bp):
ATAAAAAAT
Found at i:10183861 original size:22 final size:21
Alignment explanation
Indices: 10183818--10183884 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 21
10183808 TAAAACTTAG
*
10183818 AAAAA-TATATAAAAATCATAA
1 AAAAATTATAAAAAAATCAT-A
**
10183839 AAAAATTATAAAAAAATTGTA
1 AAAAATTATAAAAAAATCATA
**
10183860 AAAGTTTATAAAAAAAATCATA
1 AAAAATTAT-AAAAAAATCATA
10183882 AAA
1 AAA
10183885 GGCCCTTTAA
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
21 13 0.35
22 24 0.65
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (21 bp):
AAAAATTATAAAAAAATCATA
Found at i:10183862 original size:10 final size:11
Alignment explanation
Indices: 10183818--10183875 Score: 57
Period size: 11 Copynumber: 5.5 Consensus size: 11
10183808 TAAAACTTAG
*
10183818 AAAAA-TATAT
1 AAAAATTATAA
*
10183828 AAAAATCATAA
1 AAAAATTATAA
10183839 AAAAATTATAA
1 AAAAATTATAA
*
10183850 AAAAATTGT-A
1 AAAAATTATAA
**
10183860 AAAGTTTATAA
1 AAAAATTATAA
10183871 AAAAA
1 AAAAA
10183876 ATCATAAAAG
Statistics
Matches: 37, Mismatches: 9, Indels: 3
0.76 0.18 0.06
Matches are distributed among these distances:
10 12 0.32
11 25 0.68
ACGTcount: A:0.69, C:0.02, G:0.03, T:0.26
Consensus pattern (11 bp):
AAAAATTATAA
Found at i:10184197 original size:27 final size:27
Alignment explanation
Indices: 10184167--10184283 Score: 69
Period size: 27 Copynumber: 4.3 Consensus size: 27
10184157 ATTTTTCAAT
10184167 TTTTATAAAATTTTAAAATTTTTATTA
1 TTTTATAAAATTTTAAAATTTTTATTA
* * * * *
10184194 TTTTTTTAATTTTTAATA-TTATATATA
1 TTTTATAAAATTTTAAAATTTTTAT-TA
* *
10184221 TTTTATTAAAA-TGTAATAATTTTTATGA
1 TTTTA-TAAAATTTTAA-AATTTTTATTA
* * ** *
10184249 TTTT-TTAACTTTTACTGATTTTTATTT
1 TTTTATAAAATTTTA-AAATTTTTATTA
10184276 TTTTATAA
1 TTTTATAA
10184284 TTTTTTTACC
Statistics
Matches: 63, Mismatches: 20, Indels: 13
0.66 0.21 0.14
Matches are distributed among these distances:
26 8 0.13
27 39 0.62
28 11 0.17
29 5 0.08
ACGTcount: A:0.33, C:0.02, G:0.03, T:0.62
Consensus pattern (27 bp):
TTTTATAAAATTTTAAAATTTTTATTA
Found at i:10184278 original size:17 final size:17
Alignment explanation
Indices: 10184237--10184289 Score: 54
Period size: 17 Copynumber: 3.1 Consensus size: 17
10184227 TAAAATGTAA
10184237 TAATTTTTATGATTTTT
1 TAATTTTTATGATTTTT
*
10184254 TAACTTTTACTGA-TTTT
1 TAATTTTTA-TGATTTTT
* *
10184271 TATTTTTTTATAATTTTT
1 TA-ATTTTTATGATTTTT
10184289 T
1 T
10184290 TACCGCATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 16 0.55
18 13 0.45
ACGTcount: A:0.23, C:0.04, G:0.04, T:0.70
Consensus pattern (17 bp):
TAATTTTTATGATTTTT
Found at i:10196444 original size:2 final size:2
Alignment explanation
Indices: 10196437--10196462 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
10196427 TGGTATTATA
10196437 GT GT GT GT GT GT GT GT GT GT GT GT GT
1 GT GT GT GT GT GT GT GT GT GT GT GT GT
10196463 TAATGGTGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
GT
Found at i:10197806 original size:27 final size:27
Alignment explanation
Indices: 10197776--10197886 Score: 89
Period size: 27 Copynumber: 4.1 Consensus size: 27
10197766 CATTGTAGAT
*
10197776 GTCCGATGGGACATTAAACATGGGATA
1 GTCCGATGGGACGTTAAACATGGGATA
* * * *
10197803 GTCCAATGTGACGTTAAACACGAGATA
1 GTCCGATGGGACGTTAAACATGGGATA
* ** *
10197830 GTCTGACAGGACGTTAATCATGGGATA
1 GTCCGATGGGACGTTAAACATGGGATA
** * *
10197857 GTTTGATAGGACGTTGAACATAGGGA-A
1 GTCCGATGGGACGTTAAACAT-GGGATA
10197884 GTC
1 GTC
10197887 TATCGAGACG
Statistics
Matches: 65, Mismatches: 18, Indels: 2
0.76 0.21 0.02
Matches are distributed among these distances:
27 61 0.94
28 4 0.06
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.24
Consensus pattern (27 bp):
GTCCGATGGGACGTTAAACATGGGATA
Found at i:10200734 original size:45 final size:45
Alignment explanation
Indices: 10200657--10200747 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
10200647 AGATACTCGT
* *
10200657 TGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCCGG
1 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCGG
* *
10200702 TGGAATCAGCACATAGCAACCACTTTACTAATCAATGATGTTCGG
1 TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCGG
10200747 T
1 T
10200748 TCACATAGTA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (45 bp):
TGGAATCAGCACATAGCAACCACCTTACTAATCAATGATGTCCGG
Found at i:10200829 original size:51 final size:50
Alignment explanation
Indices: 10200749--10200887 Score: 161
Period size: 51 Copynumber: 2.7 Consensus size: 50
10200739 ATGTTCGGTT
* * *
10200749 CACATAGTAGCCTACATATAGTACTACACATGTGACCATTACCATTCGATA
1 CACATAGTAGCCTACACATAGTACTACACATGTGACCA-AACCATCCGATA
* * * * * *
10200800 CACGTAGTAGCCTGCACATAGTACTACACACGTGATCGAAACTATCCGGTA
1 CACATAGTAGCCTACACATAGTACTACACATGTGA-CCAAACCATCCGATA
* *
10200851 CGCATAGTAGCCTACACATAGTACTACACATGCGACC
1 CACATAGTAGCCTACACATAGTACTACACATGTGACC
10200888 TTTCATTCCT
Statistics
Matches: 72, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
50 1 0.01
51 69 0.96
52 2 0.03
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (50 bp):
CACATAGTAGCCTACACATAGTACTACACATGTGACCAAACCATCCGATA
Found at i:10214627 original size:76 final size:76
Alignment explanation
Indices: 10214477--10214638 Score: 193
Period size: 76 Copynumber: 2.1 Consensus size: 76
10214467 TCTGTTATCT
* *
10214477 CAGATTGCCTGACAATGATGGTTTATCGATTCAATCCTGTCATCCTGAGTTACCCGGCAAAGATG
1 CAGATTGCCTGACAATGATGGTTTATCGATTCAATCCTATCATCCTGAGTTACCCAGCAAAGATG
*
10214542 ACATGCCACCC
66 ACATCCCACCC
* * * * * * *
10214553 TAGATTGCTTGGCAATGATGGTTTATCGATTCAATTCTATCATCGC-GGGTTGCCCAGCAACA-T
1 CAGATTGCCTGACAATGATGGTTTATCGATTCAATCCTATCATC-CTGAGTTACCCAGCAA-AGA
*
10214616 TGACCTCCCACCC
64 TGACATCCCACCC
10214629 CAGATTGCCT
1 CAGATTGCCT
10214639 AGCAACGATG
Statistics
Matches: 71, Mismatches: 13, Indels: 4
0.81 0.15 0.05
Matches are distributed among these distances:
76 69 0.97
77 2 0.03
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (76 bp):
CAGATTGCCTGACAATGATGGTTTATCGATTCAATCCTATCATCCTGAGTTACCCAGCAAAGATG
ACATCCCACCC
Found at i:10216839 original size:101 final size:102
Alignment explanation
Indices: 10216712--10216896 Score: 302
Period size: 101 Copynumber: 1.8 Consensus size: 102
10216702 AAAGTGATGG
* *
10216712 TCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-A-TGATAGGTCCTATGTGTAGT
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGAT-GGTCATATGTGTAGT
10216775 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
65 ACTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
* * *
10216813 TCACATGTGTAGTATTATGTGCAGGCTACTATGTGTATCAGATAGTGATGGTCATATGTGTAGTA
1 TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGATGGTCATATGTGTAGTA
10216878 CTATGTGCAGGCTACTATG
66 CTATGTGCAGGCTACTATG
10216897 TGAACTGGTA
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
101 38 0.49
102 35 0.45
103 4 0.05
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (102 bp):
TCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGATAGTGATGGTCATATGTGTAGTA
CTATGTGCAGGCTACTATGCGTACCGGATAGCTTCGA
Found at i:10216897 original size:51 final size:52
Alignment explanation
Indices: 10216704--10216898 Score: 242
Period size: 51 Copynumber: 3.8 Consensus size: 52
10216694 TGAAAGTGAA
* *
10216704 AGTGAT-GGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAT
* *
10216754 A-TGATAGGTC-CTATGTGTAGTACTATGTGCAGGCTACTATGCGTACCGGAT
1 AGTGATAGGTCAC-ATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAT
* * * *
10216805 AGCT--TCGATCACATGTGTAGTATTATGTGCAGGCTACTATGTGTATCAGAT
1 AG-TGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAT
*
10216856 AGTGAT-GGTCATATGTGTAGTACTATGTGCAGGCTACTATGTG
1 AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTG
10216899 AACTGGTATC
Statistics
Matches: 124, Mismatches: 13, Indels: 15
0.82 0.09 0.10
Matches are distributed among these distances:
49 5 0.04
50 40 0.32
51 76 0.61
52 2 0.02
53 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (52 bp):
AGTGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTATGTGTACCAGAT
Found at i:10216923 original size:102 final size:101
Alignment explanation
Indices: 10216717--10216901 Score: 273
Period size: 102 Copynumber: 1.8 Consensus size: 101
10216707 GATGGTCACG
*
10216717 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCCTATGTGTAGTACTATGT
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCATATGTGTAGTACTATGT
* * *
10216782 GCAGGCTACTATGCGTACCGGATAGCTTCGATCACA
66 GCAGGCTACTATGCGAACCGGATAGCTTCAATCAAA
* * *
10216818 TGTGTAGTATTATGTGCAGGCTACTATGTGTATCAGATAGTGAT-GGTCATATGTGTAGTACTAT
1 TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGA-A-TGATAGGTCATATGTGTAGTACTAT
*
10216882 GTGCAGGCTACTATGTGAAC
64 GTGCAGGCTACTATGCGAAC
10216902 TGGTATCATT
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
101 34 0.45
102 38 0.50
103 4 0.05
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.32
Consensus pattern (101 bp):
TGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAATGATAGGTCATATGTGTAGTACTATGT
GCAGGCTACTATGCGAACCGGATAGCTTCAATCAAA
Found at i:10217103 original size:33 final size:33
Alignment explanation
Indices: 10217061--10217126 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
10217051 GATCATGTAA
10217061 CGATTAAGTGTGATTGAATGATGAATATATTTT
1 CGATTAAGTGTGATTGAATGATGAATATATTTT
10217094 CGATTAAGTGTGATTGAATGATGAATATATTTT
1 CGATTAAGTGTGATTGAATGATGAATATATTTT
10217127 TGGAATTGAA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.33, C:0.03, G:0.21, T:0.42
Consensus pattern (33 bp):
CGATTAAGTGTGATTGAATGATGAATATATTTT
Found at i:10217176 original size:16 final size:16
Alignment explanation
Indices: 10217155--10217186 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
10217145 TGATTGAAAG
*
10217155 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
10217171 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
10217187 GCAATAAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:10235155 original size:18 final size:19
Alignment explanation
Indices: 10235143--10235181 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
10235133 CATAAATATT
10235143 TTTAAAAATATAATAATAAA
1 TTTAAAAATAT-ATAATAAA
10235163 TTTAAAAATATATAA-AAA
1 TTTAAAAATATATAATAAA
10235181 T
1 T
10235182 AAAAAATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.21
19 4 0.21
20 11 0.58
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
TTTAAAAATATATAATAAA
Found at i:10235171 original size:8 final size:10
Alignment explanation
Indices: 10235119--10235230 Score: 56
Period size: 10 Copynumber: 11.5 Consensus size: 10
10235109 AAATTAAAAG
10235119 AAATATATAA
1 AAATATATAA
*
10235129 AAA-ACATAA
1 AAATATATAA
* * *
10235138 ATATTTTTAA
1 AAATATATAA
10235148 AAATATAATAA
1 AAATAT-ATAA
10235159 TAAAT-T-TAA
1 -AAATATATAA
10235168 AAATATATAA
1 AAATATATAA
*
10235178 AAATA-AAAA
1 AAATATATAA
* *
10235187 ATAATCT-TGA
1 A-AATATATAA
** *
10235197 AACGAAATAA
1 AAATATATAA
*
10235207 TAATATAT-A
1 AAATATATAA
10235216 AAATATATAA
1 AAATATATAA
10235226 AAATA
1 AAATA
10235231 AATATTTTCA
Statistics
Matches: 71, Mismatches: 22, Indels: 18
0.64 0.20 0.16
Matches are distributed among these distances:
8 4 0.06
9 24 0.34
10 35 0.49
11 4 0.06
12 4 0.06
ACGTcount: A:0.65, C:0.03, G:0.02, T:0.30
Consensus pattern (10 bp):
AAATATATAA
Found at i:10235243 original size:25 final size:24
Alignment explanation
Indices: 10235215--10235262 Score: 69
Period size: 25 Copynumber: 2.0 Consensus size: 24
10235205 AATAATATAT
*
10235215 AAAATATATAAAAATAAATATTTTC
1 AAAAAATATAAAAATAAAT-TTTTC
*
10235240 AAAAAATATAATAATAAATTTTT
1 AAAAAATATAAAAATAAATTTTT
10235263 ATATTAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.60, C:0.02, G:0.00, T:0.38
Consensus pattern (24 bp):
AAAAAATATAAAAATAAATTTTTC
Found at i:10235294 original size:25 final size:24
Alignment explanation
Indices: 10235261--10235309 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 24
10235251 TAATAAATTT
10235261 TTATATTAATATTAAATAAATATAA
1 TTATATTAATATTAAATAAA-ATAA
*
10235286 TTATCTTAATATTAAATAAAATAA
1 TTATATTAATATTAAATAAAATAA
10235310 AATAAAAACC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (24 bp):
TTATATTAATATTAAATAAAATAA
Found at i:10243455 original size:15 final size:17
Alignment explanation
Indices: 10243435--10243467 Score: 52
Period size: 15 Copynumber: 2.1 Consensus size: 17
10243425 GAGCAAGTAC
10243435 TGGAATC-GGA-AGAGA
1 TGGAATCTGGAGAGAGA
10243450 TGGAATCTGGAGAGAGA
1 TGGAATCTGGAGAGAGA
10243467 T
1 T
10243468 AAGGAGGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.44
16 3 0.19
17 6 0.38
ACGTcount: A:0.36, C:0.06, G:0.39, T:0.18
Consensus pattern (17 bp):
TGGAATCTGGAGAGAGA
Found at i:10260217 original size:16 final size:16
Alignment explanation
Indices: 10260198--10260233 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 16
10260188 ATAAAGTAAG
10260198 AATTAAATTAT-AAATT
1 AATTAAA-TATCAAATT
10260214 AATTAAATATCAAATT
1 AATTAAATATCAAATT
10260230 AATT
1 AATT
10260234 TAACTAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 3 0.16
16 16 0.84
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
AATTAAATATCAAATT
Found at i:10269670 original size:25 final size:25
Alignment explanation
Indices: 10269642--10269689 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
10269632 ACAGTCTATC
* *
10269642 TATAGTAGTCTCAGTATATACTACG
1 TATAGCAGTCTCAGGATATACTACG
*
10269667 TATAGCAGTTTCAGGATATACTA
1 TATAGCAGTCTCAGGATATACTA
10269690 TCAAAAACAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (25 bp):
TATAGCAGTCTCAGGATATACTACG
Found at i:10278233 original size:57 final size:59
Alignment explanation
Indices: 10278129--10278244 Score: 166
Period size: 57 Copynumber: 2.0 Consensus size: 59
10278119 GGTAAAAAGG
10278129 ATCTAGCCCGGACGGGTGATCCTATCCTGATATAGCCCTCCCAAAGAATATGTGTGAAAAAT
1 ATCTAGCCCGGACGGGTGATCC-AT-CTGATATAGCCCTCCCAAAGAATATGTG-GAAAAAT
* *
10278191 ATCTAGCCCGGACTGGTGAT-C-T-TGATATAGCCCTCCCGAAGAATATGTGGAAAA
1 ATCTAGCCCGGACGGGTGATCCATCTGATATAGCCCTCCCAAAGAATATGTGGAAAA
10278245 TGGATTTAGC
Statistics
Matches: 52, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
56 5 0.10
57 26 0.50
59 1 0.02
61 1 0.02
62 19 0.37
ACGTcount: A:0.30, C:0.23, G:0.22, T:0.24
Consensus pattern (59 bp):
ATCTAGCCCGGACGGGTGATCCATCTGATATAGCCCTCCCAAAGAATATGTGGAAAAAT
Found at i:10278404 original size:67 final size:67
Alignment explanation
Indices: 10278296--10278427 Score: 237
Period size: 67 Copynumber: 2.0 Consensus size: 67
10278286 GTTTATATTA
* *
10278296 CAGGGGATTTAGCCTGGACTGGTAATCTCGCTGTAAGAAATGAGGTTCGCGGGAGTGTGCTCTCT
1 CAGGGGATTTAGCCTGGACTGGCAATCCCGCTGTAAGAAATGAGGTTCGCGGGAGTGTGCTCTCT
10278361 TG
66 TG
*
10278363 CAGGGGATTTAGCCTGGACTGGCAATCCCGCTGTAAGAAATGAGGTTCGCGGGAGTGTTCTCTCT
1 CAGGGGATTTAGCCTGGACTGGCAATCCCGCTGTAAGAAATGAGGTTCGCGGGAGTGTGCTCTCT
10278428 GAATTGGAAG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 62 1.00
ACGTcount: A:0.20, C:0.20, G:0.33, T:0.27
Consensus pattern (67 bp):
CAGGGGATTTAGCCTGGACTGGCAATCCCGCTGTAAGAAATGAGGTTCGCGGGAGTGTGCTCTCT
TG
Found at i:10297255 original size:28 final size:28
Alignment explanation
Indices: 10297205--10297258 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
10297195 AGGTCTAACG
* *
10297205 CCTTTATTTATTAAGAAATGCCCAATAA
1 CCTTTATTGATTAACAAATGCCCAATAA
10297233 CCTTTATTGATGTAACAAA-GCCCAAT
1 CCTTTATTGAT-TAACAAATGCCCAAT
10297259 TTGGCCCACG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
28 17 0.74
29 6 0.26
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.33
Consensus pattern (28 bp):
CCTTTATTGATTAACAAATGCCCAATAA
Found at i:10302538 original size:27 final size:27
Alignment explanation
Indices: 10302508--10302561 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
10302498 CACTTAATTG
*
10302508 TTTTCTAAAAAAGTTAAAACATAGTTA
1 TTTTCTAAAAAACTTAAAACATAGTTA
* ** *
10302535 TTTTTTAGTACACTTAAAACATAGTTA
1 TTTTCTAAAAAACTTAAAACATAGTTA
10302562 ATTAAATAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.43, C:0.09, G:0.07, T:0.41
Consensus pattern (27 bp):
TTTTCTAAAAAACTTAAAACATAGTTA
Found at i:10309039 original size:2 final size:2
Alignment explanation
Indices: 10309023--10309067 Score: 56
Period size: 2 Copynumber: 23.0 Consensus size: 2
10309013 ATCATATACA
* * *
10309023 CT CT C- CT CA CT CT CT CT CT TT CT CT CT CT TT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
10309064 CT CT
1 CT CT
10309068 ATATATATTC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.02, C:0.47, G:0.00, T:0.51
Consensus pattern (2 bp):
CT
Found at i:10310391 original size:5 final size:5
Alignment explanation
Indices: 10310383--10310408 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
10310373 CAATATCGTA
10310383 TCAAT TCAAT TCAAT TCAAT TCAAT T
1 TCAAT TCAAT TCAAT TCAAT TCAAT T
10310409 AAATATTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.42
Consensus pattern (5 bp):
TCAAT
Found at i:10311136 original size:66 final size:66
Alignment explanation
Indices: 10311030--10311164 Score: 270
Period size: 66 Copynumber: 2.0 Consensus size: 66
10311020 AGTTTGAAAC
10311030 CTTAGGCCGATTTCATGGCTTCTTCTTCTTGCAATTTCGGGGAAAGGATGAGGAAGGAAATGCTC
1 CTTAGGCCGATTTCATGGCTTCTTCTTCTTGCAATTTCGGGGAAAGGATGAGGAAGGAAATGCTC
10311095 T
66 T
10311096 CTTAGGCCGATTTCATGGCTTCTTCTTCTTGCAATTTCGGGGAAAGGATGAGGAAGGAAATGCTC
1 CTTAGGCCGATTTCATGGCTTCTTCTTCTTGCAATTTCGGGGAAAGGATGAGGAAGGAAATGCTC
10311161 T
66 T
10311162 CTT
1 CTT
10311165 TCCATCCACA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 69 1.00
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.33
Consensus pattern (66 bp):
CTTAGGCCGATTTCATGGCTTCTTCTTCTTGCAATTTCGGGGAAAGGATGAGGAAGGAAATGCTC
T
Found at i:10315458 original size:4 final size:4
Alignment explanation
Indices: 10315449--10315494 Score: 92
Period size: 4 Copynumber: 11.5 Consensus size: 4
10315439 ATTTATCTTT
10315449 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TA
10315495 AGATTTTCTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.50, C:0.24, G:0.00, T:0.26
Consensus pattern (4 bp):
TACA
Found at i:10324006 original size:13 final size:13
Alignment explanation
Indices: 10323988--10324026 Score: 62
Period size: 13 Copynumber: 3.0 Consensus size: 13
10323978 CGGCCTGCCC
10323988 ATATTATTTTTTT
1 ATATTATTTTTTT
10324001 ATATTATTATTTTT
1 ATATTATT-TTTTT
10324015 ATA-TATTTTTTT
1 ATATTATTTTTTT
10324027 TAAAAATACA
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
12 5 0.20
13 12 0.48
14 8 0.32
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (13 bp):
ATATTATTTTTTT
Found at i:10324010 original size:16 final size:16
Alignment explanation
Indices: 10323989--10324021 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
10323979 GGCCTGCCCA
*
10323989 TATTATTTTTTTATAT
1 TATTATTTTTATATAT
10324005 TATTATTTTTATATAT
1 TATTATTTTTATATAT
10324021 T
1 T
10324022 TTTTTTAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (16 bp):
TATTATTTTTATATAT
Found at i:10326993 original size:57 final size:58
Alignment explanation
Indices: 10326909--10327027 Score: 195
Period size: 57 Copynumber: 2.1 Consensus size: 58
10326899 ATAGAAATTG
* * *
10326909 TGAAAATGGAAAAATGGAAAACATTTGGAAATGAATGTGGTTTTTTCCAAAATGACAA
1 TGAAAATGGAAAAATAGAAAACATTTGGAAATGAATGTGGTTTTCTCCAAAATGAAAA
*
10326967 TGAAAATGGAGAAATAG-AAACATTTGGAAATGAATGTGGTTTTCTCCAAAATGAAAA
1 TGAAAATGGAAAAATAGAAAACATTTGGAAATGAATGTGGTTTTCTCCAAAATGAAAA
10327024 TGAA
1 TGAA
10327028 CTGGAAATGA
Statistics
Matches: 57, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
57 42 0.74
58 15 0.26
ACGTcount: A:0.45, C:0.07, G:0.21, T:0.27
Consensus pattern (58 bp):
TGAAAATGGAAAAATAGAAAACATTTGGAAATGAATGTGGTTTTCTCCAAAATGAAAA
Found at i:10329853 original size:184 final size:184
Alignment explanation
Indices: 10329530--10329897 Score: 657
Period size: 184 Copynumber: 2.0 Consensus size: 184
10329520 CACCGATAGG
*
10329530 GCTAAACATAAAACTTTAAGATATTGTTACTCTGCTTGAAAATAGTGAGAGCTTATTATCAAGTA
1 GCTAAACATAAAACTTTAAGATATTGTTACTCTACTTGAAAATAGTGAGAGCTTATTATCAAGTA
10329595 TTAAATCTATTTTTCGGAATAACAACTCTGTTGATTTCTATTAAGAAGAGATTTTCACCTTTACA
66 TTAAATCTATTTTTCGGAATAACAACTCTGTTGATTTCTATTAAGAAGAGATTTTCACCTTTACA
* * *
10329660 CTGAAAGTAGAGAGAACTATTTCTAGTTTTGTGTTTGATTCGAATTGTTCAAGT
131 CTAAAAGTAGAGAAAACTATCTCTAGTTTTGTGTTTGATTCGAATTGTTCAAGT
*
10329714 GCTAAACATAAAACTTTAAGATATTTTTACTCTACTTGAAAATAGTGAGAGCTTATTATCAAGTA
1 GCTAAACATAAAACTTTAAGATATTGTTACTCTACTTGAAAATAGTGAGAGCTTATTATCAAGTA
* *
10329779 TTAAATCTATTTTTTGGAATAACAACTCTGTTGATTTCTATTGAGAAGAGATTTTCA-CTTTCAC
66 TTAAATCTATTTTTCGGAATAACAACTCTGTTGATTTCTATTAAGAAGAGATTTTCACCTTT-AC
10329843 ACTAAAAGTAGAGAAAACTATCTCTAGTTTTGTGTTTGATTCGAATTGTTCAAGT
130 ACTAAAAGTAGAGAAAACTATCTCTAGTTTTGTGTTTGATTCGAATTGTTCAAGT
10329898 CCACAATCGA
Statistics
Matches: 176, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
183 4 0.02
184 172 0.98
ACGTcount: A:0.34, C:0.12, G:0.15, T:0.39
Consensus pattern (184 bp):
GCTAAACATAAAACTTTAAGATATTGTTACTCTACTTGAAAATAGTGAGAGCTTATTATCAAGTA
TTAAATCTATTTTTCGGAATAACAACTCTGTTGATTTCTATTAAGAAGAGATTTTCACCTTTACA
CTAAAAGTAGAGAAAACTATCTCTAGTTTTGTGTTTGATTCGAATTGTTCAAGT
Found at i:10330069 original size:6 final size:6
Alignment explanation
Indices: 10330058--10330094 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
10330048 ATTAGAAACC
10330058 AATCAA AATCAA AATCAA AATCAA AATCAA AATCAA A
1 AATCAA AATCAA AATCAA AATCAA AATCAA AATCAA A
10330095 TCATATTAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.68, C:0.16, G:0.00, T:0.16
Consensus pattern (6 bp):
AATCAA
Found at i:10331351 original size:19 final size:20
Alignment explanation
Indices: 10331309--10331351 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
10331299 TCATGCTTTC
* *
10331309 TATTCACATTTTCATATTCA
1 TATTCACATTGTCAAATTCA
10331329 -ATTCACATTGTCAAATT-A
1 TATTCACATTGTCAAATTCA
10331347 TATTC
1 TATTC
10331352 CACAGTCGCG
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
18 1 0.05
19 19 0.95
ACGTcount: A:0.33, C:0.19, G:0.02, T:0.47
Consensus pattern (20 bp):
TATTCACATTGTCAAATTCA
Found at i:10332624 original size:41 final size:41
Alignment explanation
Indices: 10332543--10332776 Score: 378
Period size: 41 Copynumber: 5.7 Consensus size: 41
10332533 TTAATTTAAA
* * *
10332543 CAGATTCACTGGCACTTAGCCCTGTTAGGCTTAAAGCCTGATT
1 CAGA-TCACCGGCACTTAG-CCTGCTAGGCTTATAGCCTGATT
* *
10332586 CAGATCACCGACACTTAGCCTGCTAGGCTTATAACCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
10332627 TAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
10332668 CAGATCACCGGCACTTAGCTTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
10332709 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
1 CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
*
10332750 CAGTTCACCGGCACTTAGCCTGCTAGG
1 CAGATCACCGGCACTTAGCCTGCTAGG
10332777 TTTTAAAACC
Statistics
Matches: 179, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
41 163 0.91
42 12 0.07
43 4 0.02
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.28
Consensus pattern (41 bp):
CAGATCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATT
Found at i:10335093 original size:45 final size:45
Alignment explanation
Indices: 10335011--10335099 Score: 126
Period size: 45 Copynumber: 2.0 Consensus size: 45
10335001 AATGGTAGTA
*
10335011 GTAACAGTATTCAACACACAAAGTGCTGAATCTATAACAGTAACG
1 GTAACAGTATTCAACACACAAAGTGCTGAATCGATAACAGTAACG
* * *
10335056 GTAACAGTATTCGACACACAAAGTG-TCGAGTCGATAACGGTAAC
1 GTAACAGTATTCAACACACAAAGTGCT-GAATCGATAACAGTAAC
10335100 AGTAGTCGGC
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 1 0.03
45 38 0.97
ACGTcount: A:0.39, C:0.20, G:0.19, T:0.21
Consensus pattern (45 bp):
GTAACAGTATTCAACACACAAAGTGCTGAATCGATAACAGTAACG
Found at i:10340961 original size:31 final size:30
Alignment explanation
Indices: 10340917--10340981 Score: 78
Period size: 31 Copynumber: 2.1 Consensus size: 30
10340907 TAAATAAGAT
*
10340917 AATAATAAATATCTCATTAAA-ATATTAATAA
1 AATAATAAATATCTAATTAAATA-ATT-ATAA
**
10340948 AATAATATTTATCTAATTAAATAATTATAA
1 AATAATAAATATCTAATTAAATAATTATAA
10340978 AATA
1 AATA
10340982 TTATCAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
30 8 0.27
31 21 0.70
32 1 0.03
ACGTcount: A:0.57, C:0.05, G:0.00, T:0.38
Consensus pattern (30 bp):
AATAATAAATATCTAATTAAATAATTATAA
Found at i:10344531 original size:15 final size:14
Alignment explanation
Indices: 10344495--10344532 Score: 60
Period size: 14 Copynumber: 2.7 Consensus size: 14
10344485 TTTGGCAATA
10344495 CTTTT-AAAAAGTG
1 CTTTTAAAAAAGTG
10344508 CTTTTAAAAAAGTG
1 CTTTTAAAAAAGTG
10344522 CTTTTGAAAAA
1 CTTTT-AAAAA
10344533 TTAAGTTTGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 5 0.22
14 13 0.57
15 5 0.22
ACGTcount: A:0.42, C:0.08, G:0.13, T:0.37
Consensus pattern (14 bp):
CTTTTAAAAAAGTG
Found at i:10347025 original size:48 final size:48
Alignment explanation
Indices: 10346959--10347058 Score: 200
Period size: 48 Copynumber: 2.1 Consensus size: 48
10346949 TACTTCAATT
10346959 TACTTATTTAAACAGTTTTTGGTATGAACAAATAAAGTGCTTTTTCAA
1 TACTTATTTAAACAGTTTTTGGTATGAACAAATAAAGTGCTTTTTCAA
10347007 TACTTATTTAAACAGTTTTTGGTATGAACAAATAAAGTGCTTTTTCAA
1 TACTTATTTAAACAGTTTTTGGTATGAACAAATAAAGTGCTTTTTCAA
10347055 TACT
1 TACT
10347059 CATGTCTAAC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.42
Consensus pattern (48 bp):
TACTTATTTAAACAGTTTTTGGTATGAACAAATAAAGTGCTTTTTCAA
Found at i:10347186 original size:30 final size:30
Alignment explanation
Indices: 10347150--10347211 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
10347140 AATTACAGAG
10347150 TTAGTATAAAAGAATATTAGAGTTTGGTCC
1 TTAGTATAAAAGAATATTAGAGTTTGGTCC
10347180 TTAGTATAAAAGAATATTAGAGTTTGGTCC
1 TTAGTATAAAAGAATATTAGAGTTTGGTCC
10347210 TT
1 TT
10347212 CGATTTTGTT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.35, C:0.06, G:0.19, T:0.39
Consensus pattern (30 bp):
TTAGTATAAAAGAATATTAGAGTTTGGTCC
Found at i:10350832 original size:24 final size:24
Alignment explanation
Indices: 10350798--10350848 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
10350788 TTTTTAGAAG
* *
10350798 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAGCATAATAT
*
10350822 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATGAGCATAATAT
10350846 ATT
1 ATT
10350849 CGACTTTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAATAT
Found at i:10352732 original size:7 final size:8
Alignment explanation
Indices: 10352720--10352801 Score: 71
Period size: 9 Copynumber: 10.0 Consensus size: 8
10352710 CTATCCCCTA
10352720 ATTTT-TT
1 ATTTTATT
10352727 ATTTT-TT
1 ATTTTATT
*
10352734 ATTTTGTT
1 ATTTTATT
*
10352742 CTTTTATT
1 ATTTTATT
10352750 ATTATTATT
1 ATT-TTATT
10352759 ATTATTATT
1 ATT-TTATT
10352768 ATTATTATT
1 ATT-TTATT
10352777 ATATTTATT
1 AT-TTTATT
*
10352786 A-TTAATT
1 ATTTTATT
10352793 ATTCTTATT
1 ATT-TTATT
10352802 TACACCTATC
Statistics
Matches: 65, Mismatches: 5, Indels: 8
0.83 0.06 0.10
Matches are distributed among these distances:
7 18 0.28
8 11 0.17
9 35 0.54
10 1 0.02
ACGTcount: A:0.26, C:0.02, G:0.01, T:0.71
Consensus pattern (8 bp):
ATTTTATT
Found at i:10352753 original size:3 final size:3
Alignment explanation
Indices: 10352745--10352801 Score: 80
Period size: 3 Copynumber: 18.7 Consensus size: 3
10352735 TTTTGTTCTT
10352745 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA TTTA TTA TTAA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TT-A
*
10352791 TTA TTC TTA TT
1 TTA TTA TTA TT
10352802 TACACCTATC
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
2 2 0.04
3 42 0.86
4 5 0.10
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:10353000 original size:52 final size:50
Alignment explanation
Indices: 10352895--10353018 Score: 119
Period size: 52 Copynumber: 2.4 Consensus size: 50
10352885 TTAATGTTTT
** * *
10352895 ATATATATATTTATACATACATATGTTTTTATATATTTTATAACTTTAGA
1 ATATATATATACATACATACATATCTTTTTATATATTTTATAACTTTAAA
*
10352945 ATATATATATACATACATATAT-TCTTCTTTATATATTTTTTATAA-TCTTAAA
1 ATATATATATACATACATACATATCTT-TTTATATA--TTTTATAACT-TTAAA
**
10352997 ATATACGTATACAT-CTATACAT
1 ATATATATATACATAC-ATACAT
10353019 TTTTATAATA
Statistics
Matches: 61, Mismatches: 8, Indels: 8
0.79 0.10 0.10
Matches are distributed among these distances:
49 3 0.05
50 27 0.44
51 2 0.03
52 29 0.48
ACGTcount: A:0.39, C:0.10, G:0.02, T:0.49
Consensus pattern (50 bp):
ATATATATATACATACATACATATCTTTTTATATATTTTATAACTTTAAA
Found at i:10353059 original size:26 final size:27
Alignment explanation
Indices: 10353013--10353068 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
10353003 GTATACATCT
*
10353013 ATACATTTTTATAATACATATATGTAC
1 ATACATTTTTATAATACATATATATAC
** *
10353040 ATACA-TTTTATAATTTATATTTATAC
1 ATACATTTTTATAATACATATATATAC
10353066 ATA
1 ATA
10353069 TATATTTGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.41, C:0.09, G:0.02, T:0.48
Consensus pattern (27 bp):
ATACATTTTTATAATACATATATATAC
Found at i:10360252 original size:14 final size:14
Alignment explanation
Indices: 10360235--10360282 Score: 54
Period size: 14 Copynumber: 3.9 Consensus size: 14
10360225 TTATAACTAT
10360235 TTATATATATCTTA
1 TTATATATATCTTA
10360249 TTATATATA---TA
1 TTATATATATCTTA
10360260 -T-TA-ATATCTTA
1 TTATATATATCTTA
10360271 TTATATATATCT
1 TTATATATATCT
10360283 ATATATCTCT
Statistics
Matches: 28, Mismatches: 0, Indels: 12
0.70 0.00 0.30
Matches are distributed among these distances:
8 3 0.11
9 2 0.07
10 1 0.04
11 4 0.14
12 1 0.04
13 2 0.07
14 15 0.54
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (14 bp):
TTATATATATCTTA
Found at i:10360269 original size:22 final size:23
Alignment explanation
Indices: 10360238--10360305 Score: 88
Period size: 22 Copynumber: 3.0 Consensus size: 23
10360228 TAACTATTTA
10360238 TATATATCTTATTATATATATAT
1 TATATATCTTATTATATATATAT
*
10360261 TA-ATATCTTATTATATATAT-C
1 TATATATCTTATTATATATATAT
*
10360282 TATATATCTCT-TTATAAATATAT
1 TATATATCT-TATTATATATATAT
10360305 T
1 T
10360306 TTTTAGCTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
21 2 0.05
22 33 0.85
23 4 0.10
ACGTcount: A:0.38, C:0.07, G:0.00, T:0.54
Consensus pattern (23 bp):
TATATATCTTATTATATATATAT
Found at i:10360293 original size:24 final size:24
Alignment explanation
Indices: 10360223--10360293 Score: 85
Period size: 22 Copynumber: 3.0 Consensus size: 24
10360213 TTATTATTAC
*
10360223 TATTATA-ACTATTTATATATATCT
1 TATTATATA-TATATATATATATCT
10360247 TATTATATATATAT-TA-ATATCT
1 TATTATATATATATATATATATCT
* *
10360269 TATTATATATATCTATATATCTCT
1 TATTATATATATATATATATATCT
10360293 T
1 T
10360294 TATAAATATA
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
22 19 0.46
23 4 0.10
24 17 0.41
25 1 0.02
ACGTcount: A:0.37, C:0.08, G:0.00, T:0.55
Consensus pattern (24 bp):
TATTATATATATATATATATATCT
Found at i:10360468 original size:32 final size:30
Alignment explanation
Indices: 10360403--10360458 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
10360393 TTATTCATAT
*
10360403 ATATACATACTTACATTGTTTTATTTTACA
1 ATATACATACTTACATTCTTTTATTTTACA
*
10360433 ATATACATACTTATA-TCTTTTATTTT
1 ATATACATACTTACATTCTTTTATTTT
10360459 TATGTAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 10 0.42
30 14 0.58
ACGTcount: A:0.32, C:0.12, G:0.02, T:0.54
Consensus pattern (30 bp):
ATATACATACTTACATTCTTTTATTTTACA
Found at i:10362038 original size:132 final size:131
Alignment explanation
Indices: 10361793--10362109 Score: 438
Period size: 132 Copynumber: 2.4 Consensus size: 131
10361783 AGATCAAAGA
* **
10361793 CACCAATCTTATCTCCCTAAGCAGTAGTTAAGTAGGTTGAAGATTGTAGATCTTTCTCCCTAAGC
1 CACCAACCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTTCTCCCTAAGC
* * **
10361858 AGTAGTGGAGTAGATCAAAAACGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGCTGATTTAAG
66 AGTAGTGGAGCAGATCAAAAACAGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGCAAATTTAAG
10361923 C
131 C
*
10361924 CACCAACCTTATCTCCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
1 CACCAACCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTT-TCTCCCTAAG
* * * *
10361989 CAGTAGTGGAGCAGATCGAAGACAGTGAATCTTACCTTCCCAAGGTAGTAGGGATGCAAATTTAA
65 CAGTAGTGGAGCAGATCAAAAACAGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGCAAATTTAA
10362054 GC
130 GC
* ** * * **
10362056 CGCC-AGTTCTATCTCCCTCAGCAGCAGTGGAGTAGGTCAAAGATTGTAGATCTT
1 CACCAACCT-TATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTT
10362110 GTCTTCCTGT
Statistics
Matches: 164, Mismatches: 20, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
131 52 0.32
132 112 0.68
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (131 bp):
CACCAACCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTTCTCCCTAAGC
AGTAGTGGAGCAGATCAAAAACAGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGCAAATTTAAG
C
Found at i:10362273 original size:219 final size:220
Alignment explanation
Indices: 10361924--10362548 Score: 1002
Period size: 219 Copynumber: 2.8 Consensus size: 220
10361914 TGATTTAAGC
* * *
10361924 CACCAACCTTATCTCCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
1 CACCAGCCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
* *
10361989 CAGTAGTGGAGCAGATCGAAGACAGTGAATCTTACCTTCCCAAGGTAGTAGGGATGCAAATTTAA
66 CAGTAGTGGAGCAGATCGAAGACAGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGCAAATTTAA
* * *
10362054 GCCGCCAGTTCTATCTCCCTCAGCAGCAGTGGAGTAGGTCAAAGATTGTAGATCTTGTCTTCCTG
131 GCCACCAGTCCTATCTCCCTAAGCAGCAGTGGAGTAGGTCAAAGATTGTAGATCTTGTCTTCCTG
10362119 TACTAGCAGTGAAGCAGATCGGAAG
196 TACTAGCAGTGAAGCAGATCGGAAG
* *
10362144 CACCAGCCTTATCTCTCTAAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTT-TCTCTCTAAG
1 CACCAGCCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
* * * *
10362208 CAGTAGTGGAGCAAATCGAAGACAGCGAATCTTACCTTCCCAAGGTAGTAGAGAAGTAGATTTAA
66 CAGTAGTGGAGCAGATCGAAGACAGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGCAAATTTAA
* *
10362273 GCCACCAGTCCTATCTCCCTGAGCAACAGTGGAGTAGGTCAAAGATTGTAGATCTTGTCTTCCTG
131 GCCACCAGTCCTATCTCCCTAAGCAGCAGTGGAGTAGGTCAAAGATTGTAGATCTTGTCTTCCTG
*
10362338 TACTGGCAGTGAAGCAGATCGGAAG
196 TACTAGCAGTGAAGCAGATCGGAAG
* *
10362363 CACTAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
1 CACCAGCCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
* * *
10362428 CAGTAGTGGGGCAGATCGAAGACGGCGAATCATACCTTCCCAAGGTAGTAGGGAAGCAAATTTAA
66 CAGTAGTGGAGCAGATCGAAGACAGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGCAAATTTAA
* **
10362493 GCCACCAG-CCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTT
131 GCCACCAGTCC-TATCTCCCTAAGCAGCAGTGGAGTAGGTCAAAGATTGTAGATCTT
10362549 ATCTCCCTAA
Statistics
Matches: 371, Mismatches: 32, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
219 206 0.56
220 165 0.44
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (220 bp):
CACCAGCCTTATCTCCCTAAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
CAGTAGTGGAGCAGATCGAAGACAGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGCAAATTTAA
GCCACCAGTCCTATCTCCCTAAGCAGCAGTGGAGTAGGTCAAAGATTGTAGATCTTGTCTTCCTG
TACTAGCAGTGAAGCAGATCGGAAG
Found at i:10362524 original size:132 final size:132
Alignment explanation
Indices: 10362367--10362680 Score: 497
Period size: 132 Copynumber: 2.4 Consensus size: 132
10362357 CGGAAGCACT
*
10362367 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
1 AGCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
*
10362432 AGTGGGGCAGATCGAAGACGGCGAATCATACCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCA
66 AGTGGAGCAGATCGAAGACGGCGAATCATACCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCA
10362497 CC
131 CC
*
10362499 AGCCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
1 AGCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
* * * *
10362564 AGTGGAGCAGATCGAAGACGGTGAATCTTACCTTTCCAAGGTAGTAGGGAAGCATATTTAAGCCA
66 AGTGGAGCAGATCGAAGACGGCGAATCATACCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCA
10362629 CC
131 CC
* * * *
10362631 AGTCC-TATCTCCCTGAGCA-TCAGTGCAGTAGATCGAAAATTGTAGATCTT
1 AG-CCTTATCTCCCTGAGCAGT-AGTGGAGTAGGTTGAAGATTGTAGATCTT
10362681 GTCTTCCTGT
Statistics
Matches: 168, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
131 1 0.01
132 165 0.98
133 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (132 bp):
AGCCTTATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAGACGGCGAATCATACCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCA
CC
Found at i:10362646 original size:352 final size:351
Alignment explanation
Indices: 10362144--10362990 Score: 1344
Period size: 352 Copynumber: 2.4 Consensus size: 351
10362134 AGATCGGAAG
* * *
10362144 CACCAGCCTTATCTCTCTAAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTT-TCTCTCTAAG
1 CACCAGCCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
* * * *
10362208 CAGTAGTGGAGCAAATCGAAGACAGCGAATCTTACCTTCCCAAGGTAGTAGAGAAGTAGATTTAA
66 CAGTAGTGGAGCAGATCGAAGACGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
* *
10362273 GCCACCAGTCCTATCTCCCTGAGCAACAGTGGAGTAGGTC-AAAGATTGTAGATCTTGTCTTCCT
131 GCCACCAGTCCTATCTCCCTGAGCAACAGTGCAGTAGATCGAAA-ATTGTAGATCTTGTCTTCCT
* *
10362337 GTACTGGCAGTGAAGCAGATCGGAAGCACTAGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTG
195 GTACTGGCAGTGAAGCAGATCGGAAGCACCAGCCTTATCTCCCTGAGCAGCAATGGAGTAGGTTG
*
10362402 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGGGCAGATCGAAGACGGCGAATCATACCTTC
260 AAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCATACCTTC
*
10362467 CCAAGGTAGTAGGGAAGCAAATTTAAGC
325 CCAAGATAGTA-GGAAGCAAATTTAAGC
10362495 CACCAGCCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
1 CACCAGCCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
* * *
10362560 CAGTAGTGGAGCAGATCGAAGACGGTGAATCTTACCTTTCCAAGGTAGTAGGGAAGCATATTTAA
66 CAGTAGTGGAGCAGATCGAAGACGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
*
10362625 GCCACCAGTCCTATCTCCCTGAGCATCAGTGCAGTAGATCGAAAATTGTAGATCTTGTCTTCCTG
131 GCCACCAGTCCTATCTCCCTGAGCAACAGTGCAGTAGATCGAAAATTGTAGATCTTGTCTTCCTG
*
10362690 TACTGGCAGTGAAGCAGATCGGAAGCACCAGCCTTATCTCCTTGAGCAGCAATGGAGTAGGTTGA
196 TACTGGCAGTGAAGCAGATCGGAAGCACCAGCCTTATCTCCCTGAGCAGCAATGGAGTAGGTTGA
* * * * *
10362755 AGATTGTAGATCTTATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCC
261 AGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCATACCTTCC
* * *
10362820 CGAGATAGTAGGAAGTAGATTTAAGC
326 CAAGATAGTAGGAAGCAAATTTAAGC
*
10362846 CACCAGTCC-TATCTCCCTGAGCAGCT-GTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTA
1 CACCAG-CCTTATCTCCCTAAGCAG-TAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTA
* *
10362909 AGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGATAGTA-GGAAGCAGATTT
64 AGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGCAGATTT
* *
10362973 AAGCCATCAGTCTTATCT
129 AAGCCACCAGTCCTATCT
10362991 TCCTAAGCCG
Statistics
Matches: 458, Mismatches: 34, Indels: 9
0.91 0.07 0.02
Matches are distributed among these distances:
350 27 0.06
351 171 0.37
352 257 0.56
353 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (351 bp):
CACCAGCCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
CAGTAGTGGAGCAGATCGAAGACGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGCAGATTTAA
GCCACCAGTCCTATCTCCCTGAGCAACAGTGCAGTAGATCGAAAATTGTAGATCTTGTCTTCCTG
TACTGGCAGTGAAGCAGATCGGAAGCACCAGCCTTATCTCCCTGAGCAGCAATGGAGTAGGTTGA
AGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCATACCTTCC
CAAGATAGTAGGAAGCAAATTTAAGC
Found at i:10362877 original size:131 final size:131
Alignment explanation
Indices: 10362715--10362990 Score: 437
Period size: 131 Copynumber: 2.1 Consensus size: 131
10362705 AGATCGGAAG
* *
10362715 CACCAG-CCTTATCTCCTTGAGCAGCAATGGAGTAGGTTGAAGATTGTAGATCTTATCTCTCTAA
1 CACCAGTCC-TATCTCCCTGAGCAGCAATGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAA
* * * *
10362779 GCAGTAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCCCGAGATAGTAGGAAGTAGATTTAA
65 GCAGTAGTGGAGCAGATCGAAGACGGCGAATCCTATCTTCCCAAGATAGTAGGAAGCAGATTTAA
10362844 GC
130 GC
**
10362846 CACCAGTCCTATCTCCCTGAGCAGCTGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
1 CACCAGTCCTATCTCCCTGAGCAGCAATGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
*
10362911 CAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGATAGTAGGAAGCAGATTTAAG
66 CAGTAGTGGAGCAGATCGAAGACGGCGAATCCTATCTTCCCAAGATAGTAGGAAGCAGATTTAAG
10362976 C
131 C
* *
10362977 CATCAGTCTTATCT
1 CACCAGTCCTATCT
10362991 TCCTAAGCCG
Statistics
Matches: 133, Mismatches: 11, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
131 131 0.98
132 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.27
Consensus pattern (131 bp):
CACCAGTCCTATCTCCCTGAGCAGCAATGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAG
CAGTAGTGGAGCAGATCGAAGACGGCGAATCCTATCTTCCCAAGATAGTAGGAAGCAGATTTAAG
C
Found at i:10362943 original size:44 final size:43
Alignment explanation
Indices: 10362764--10363053 Score: 119
Period size: 44 Copynumber: 6.7 Consensus size: 43
10362754 AAGATTGTAG
* ** *
10362764 ATCTTATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAG-CA
* * * ** * *
10362808 ATCCTATCTTCCC-GAG-A-TAGTAGGAAGTAGATTTAAGCCACCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCGAAGACAGCA
* * * * * * ** *
10362851 GTCCTATCTCCCTGAGCAGCT-GTGGAGTAGGTTGAAGATTGTA
1 ATCTTATCTCCCTAAGCAG-TAGTGGAGCAGATCGAAGACAGCA
*
10362894 GATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGA
1 -ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGC-A
** * *
10362939 ATCTTATCTTCCC-AAG-A-TAGTAGGAAGCAGATTTAAGCCATCA
1 ATCTTATC-TCCCTAAGCAGTAGT-GG-AGCAGATCGAAGACAGCA
* * * * *
10362982 GTCTTATCTTCCTAAGCCGTAGTGGAGCAGA-CAGAAGAAATCA
1 ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC-GAAGACAGCA
* **
10363025 ATCCTATCTCCCTGAAGTTGTAGTGGAGC
1 ATCTTATCTCCCT-AAGCAGTAGTGGAGC
10363054 GAATTAAAAC
Statistics
Matches: 183, Mismatches: 45, Indels: 36
0.69 0.17 0.14
Matches are distributed among these distances:
42 15 0.08
43 63 0.34
44 90 0.49
45 14 0.08
46 1 0.01
ACGTcount: A:0.29, C:0.21, G:0.24, T:0.26
Consensus pattern (43 bp):
ATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGCA
Found at i:10362947 original size:571 final size:570
Alignment explanation
Indices: 10361797--10362947 Score: 1765
Period size: 571 Copynumber: 2.0 Consensus size: 570
10361787 CAAAGACACC
* *
10361797 AATCTTATCTCCCTAAGCAGTAGTTAAGTAGGTTGAAGATTGTAGATCTTTCTCCCTAAGCAGTA
1 AATCTTATCTCCCTAAGCAGCAGTGAAGTAGGTTGAAGATTGTAGATCTTTCTCCCTAAGCAGTA
* * **
10361862 GTGGAGTAGATCAAAAACGGCGAATCTTACCTTCCCAAGGTAGTAGGGAAGCTGATTTAAGCCAC
66 GTGGAGCAGATCAAAAACGGCGAATCATACCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCAC
*
10361927 CAACCTTATCTCCCTAAGTAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
131 CAACCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
*
10361992 TAGTGGAGCAGATCGAAGACAGTGAATCTTACCTTCCCAAGGTAGTAGGGATGCAAATTTAAGCC
196 TAGTGGAGCAGATCGAAGACAGTGAATCTTACCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCC
* * * *
10362057 GCCAGTTCTATCTCCCTCAGCAGCAGTGGAGTAGGTCAAAGATTGTAGATCTTGTCTTCCTGTAC
261 ACCAGTCCTATCTCCCTCAGCAGCAGTGCAGTAGATCAAAGATTGTAGATCTTGTCTTCCTGTAC
*
10362122 TAGCAGTGAAGCAGATCGGAAGCACCAGCCTTATCTCTCTAAGCAGCAGTGGAGTAGGTTGAAGA
326 TAGCAGTGAAGCAGATCGGAAGCACCAGCCTTATCTCTCTAAGCAGCAATGGAGTAGGTTGAAGA
*
10362187 TTGTAGATCTTTCTCTCTAAGCAGTAGTGGAGCAAATCGAAGACAGCGAATCTTACCTTCCCAAG
391 TTGTAGATCTTTCTCTCTAAGCAGTAGTGGAGCAAATCGAAGACAGCGAATCCTACCTTCCCAAG
*
10362252 GTAGTAGAGAAGTAGATTTAAGCCACCAGTCCTATCTCCCTGAGCAACAGTGGAGTAGGTCAAAG
456 ATAGTAGAGAAGTAGATTTAAGCCACCAGTCCTATCTCCCTGAGCAACAGTGGAGTAGGTCAAAG
* * * * *
10362317 ATTGTAGATCTTGTCTTCCTGTACTGGCAGTGAAGCAGATCGGAAGCACT
521 ATTGTAGATCTTATCTCCCTGAACTAGCAGTGAAGCAGATCGGAAGCACG
** * *
10362367 AGCCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAGT
1 AATCTTATCTCCCTAAGCAGCAGTGAAGTAGGTTGAAGATTGTAGATCTT-TCTCCCTAAGCAGT
* * *
10362432 AGTGGGGCAGATCGAAGACGGCGAATCATACCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCA
65 AGTGGAGCAGATCAAAAACGGCGAATCATACCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCA
*
10362497 CCAGCCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
130 CCAACCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCA
* * *
10362562 GTAGTGGAGCAGATCGAAGACGGTGAATCTTACCTTTCCAAGGTAGTAGGGAAGCATATTTAAGC
195 GTAGTGGAGCAGATCGAAGACAGTGAATCTTACCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGC
* *
10362627 CACCAGTCCTATCTCCCTGAGCATCAGTGCAGTAGATCGAAA-ATTGTAGATCTTGTCTTCCTGT
260 CACCAGTCCTATCTCCCTCAGCAGCAGTGCAGTAGATC-AAAGATTGTAGATCTTGTCTTCCTGT
* *
10362691 ACTGGCAGTGAAGCAGATCGGAAGCACCAGCCTTATCTC-CTTGAGCAGCAATGGAGTAGGTTGA
324 ACTAGCAGTGAAGCAGATCGGAAGCACCAGCCTTATCTCTC-TAAGCAGCAATGGAGTAGGTTGA
* ** * *
10362755 AGATTGTAGATCTTATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCC
388 AGATTGTAGATCTT-TCTCTCTAAGCAGTAGTGGAGCAAATCGAAGACAGCGAATCCTACCTTCC
* * * *
10362820 CGAGATAGTAG-GAAGTAGATTTAAGCCACCAGTCCTATCTCCCTGAGCAGCTGTGGAGTAGGTT
452 CAAGATAGTAGAGAAGTAGATTTAAGCCACCAGTCCTATCTCCCTGAGCAACAGTGGAGTAGGTC
* * * *
10362884 GAAGATTGTAGATCTTATCTCCCT-AAGC-AGTAGTGGAGCAGATC-GAAGACGGCG
517 AAAGATTGTAGATCTTATCTCCCTGAA-CTAGCAGTGAAGCAGATCGGAAG-C-ACG
10362938 AATCTTATCT
1 AATCTTATCT
10362948 TCCCAAGATA
Statistics
Matches: 524, Mismatches: 50, Indels: 13
0.89 0.09 0.02
Matches are distributed among these distances:
569 4 0.01
570 60 0.11
571 404 0.77
572 56 0.11
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (570 bp):
AATCTTATCTCCCTAAGCAGCAGTGAAGTAGGTTGAAGATTGTAGATCTTTCTCCCTAAGCAGTA
GTGGAGCAGATCAAAAACGGCGAATCATACCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCCAC
CAACCTTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGTAGATCTTATCTCCCTAAGCAG
TAGTGGAGCAGATCGAAGACAGTGAATCTTACCTTCCCAAGGTAGTAGGGAAGCAAATTTAAGCC
ACCAGTCCTATCTCCCTCAGCAGCAGTGCAGTAGATCAAAGATTGTAGATCTTGTCTTCCTGTAC
TAGCAGTGAAGCAGATCGGAAGCACCAGCCTTATCTCTCTAAGCAGCAATGGAGTAGGTTGAAGA
TTGTAGATCTTTCTCTCTAAGCAGTAGTGGAGCAAATCGAAGACAGCGAATCCTACCTTCCCAAG
ATAGTAGAGAAGTAGATTTAAGCCACCAGTCCTATCTCCCTGAGCAACAGTGGAGTAGGTCAAAG
ATTGTAGATCTTATCTCCCTGAACTAGCAGTGAAGCAGATCGGAAGCACG
Found at i:10363019 original size:131 final size:131
Alignment explanation
Indices: 10362753--10363019 Score: 383
Period size: 131 Copynumber: 2.0 Consensus size: 131
10362743 GGAGTAGGTT
* * *
10362753 GAAGATTGTAGATCTTATCTCTCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCCTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCCTATCTT
* * * * **
10362818 CCCGAGATAGTAGGAAGTAGATTTAAGCCACCAGTCCTATCTCCCTGAGCAGCTGTGGAGTAGGT
66 CCCAAGATAGTAGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGCTGTGGAGCAGAC
*
10362883 T
131 A
*
10362884 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTT
1 GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCCTATCTT
* * * *
10362949 CCCAAGATAGTAGGAAGCAGATTTAAGCCATCAGTCTTATCTTCCTAAGCCG-TAGTGGAGCAGA
66 CCCAAGATAGTAGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGCT-GTGGAGCAGA
10363013 CA
130 CA
10363015 GAAGA
1 GAAGA
10363020 AATCAATCCT
Statistics
Matches: 120, Mismatches: 15, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
130 1 0.01
131 119 0.99
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (131 bp):
GAAGATTGTAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAATCCTATCTT
CCCAAGATAGTAGGAAGCAGATTTAAGCCACCAGTCCTATCTCCCTAAGCAGCTGTGGAGCAGAC
A
Found at i:10363048 original size:131 final size:131
Alignment explanation
Indices: 10362782--10363181 Score: 358
Period size: 131 Copynumber: 3.1 Consensus size: 131
10362772 TCTCTAAGCA
* * * *
10362782 GTAGTGGAGCAGATCGAAGATGGTGAATCCTATCTTCCCGAGATAGTAGGAAGTAGATTTAAGCC
1 GTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGATAGTAGGAAGTAGATTTAAGCC
* * * * * *** * * *
10362847 ACCAGTCCTATCTCCCTGAGCAGCT-GTGGAGTAGGTTGAAG-ATTGTAGATCTTATCTCCCT-A
66 ATCAGTCTTATCTTCCTAAGCAG-TAGTGGAGCAGACAGAAGAAAT-CA-ATCCTATCTCCCTGA
**
10362909 AGCA
128 AGTT
*
10362913 GTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGATAGTAGGAAGCAGATTTAAGCC
1 GTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGATAGTAGGAAGTAGATTTAAGCC
*
10362978 ATCAGTCTTATCTTCCTAAGCCGTAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGT
66 ATCAGTCTTATCTTCCTAAGCAGTAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGT
10363043 T
131 T
* * ** * ** *
10363044 GTAGTGGAGC-GAAT-TAAAACCAC-AGATTTTATCTCTCTGAAGTTGTAGTAGG--GTAGA-TT
1 GTAGTGGAGCAG-ATCGAAGACGGCGA-ATCTTATCT-TCCCAAG--ATAGTAGGAAGTAGATTT
*
10363103 --G-CATCAAGTCTTATC-TCCTTAAGCAGTAGTGGAGCAGACAGGAGAAATCAATCCTATCTCC
61 AAGCCATC-AGTCTTATCTTCC-TAAGCAGTAGTGGAGCAGACAGAAGAAATCAATCCTATCTCC
10363164 CTGAAGTT
124 CTGAAGTT
*
10363172 GCAGTGGAGC
1 GTAGTGGAGC
10363182 GAATTAAAAC
Statistics
Matches: 228, Mismatches: 31, Indels: 23
0.81 0.11 0.08
Matches are distributed among these distances:
127 7 0.03
128 67 0.29
129 1 0.00
130 29 0.13
131 115 0.50
132 2 0.01
133 7 0.03
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.26
Consensus pattern (131 bp):
GTAGTGGAGCAGATCGAAGACGGCGAATCTTATCTTCCCAAGATAGTAGGAAGTAGATTTAAGCC
ATCAGTCTTATCTTCCTAAGCAGTAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGT
T
Found at i:10363178 original size:44 final size:42
Alignment explanation
Indices: 10363017--10363661 Score: 263
Period size: 44 Copynumber: 15.1 Consensus size: 42
10363007 AGCAGACAGA
* * *
10363017 AGAAATCAATCCTATCTCCCTGAAGTTGTAGTGGAGC-GAATT
1 AGAAATCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ATC
* * * * *
10363059 A-AAACCACAGATTTTATCTCTCTGAAGTTGTAGTAGG-GTAGAT-
1 AGAAA--TCA-ATCTTATCTCCCTGAAGTTGCAGT-GGAGCAGATC
* * * ** *
10363102 TG-CATCAAGTCTTATCT-CCTTAAGCAGTAGTGGAGCAGA-C
1 AGAAATCAA-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
* *
10363142 AGGAGAAATCAATCCTATCTCCCTGAAGTTGCAGTGGAGC-GAATT
1 ---AGAAATCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAG-ATC
* * *
10363187 A-AAACCACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC
1 AGAAA--TC-AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
* * * ** *
10363231 -G-CATCCAGTCTTATCTCCCTGAAGTTGTAGTAAAGTAGA-C
1 AGAAAT-CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
* * ** *
10363271 GAAAGAAACCAATCCTATCTCCCTGAAGTTGCAGTGGAGTGGATT
1 ---AGAAATCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
* * * *
10363316 A-AAACCACAGATCTTATCTCTCTAAAGTTGTAGTAGG-GCAGATC
1 AGAAA--TCA-ATCTTATCTCCCTGAAGTTGCAGT-GGAGCAGATC
* * *
10363360 -G-CATCCAATCTTATCTCCTTGAAGTTGCAGTAGAGCAGA-C
1 AGAAAT-CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
* * * * * *
10363400 GAAAGAAACCAATCCTATCTCCCTGAAATTACAGTGGAGCGGATT
1 ---AGAAATCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
* * * *
10363445 AAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC
1 AGAAA-TCA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
* * * *
10363489 -G-CATCCAGTCTTATCTCCCTAAAGTTACAGTGGAGCAGA-C
1 AGAAAT-CAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
* * * * *
10363529 AGAAGAAACCAATCCTATCTCCTTGAAGTTGCAGTGGAGCGGATT
1 ---AGAAATCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
* * * *
10363574 AAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATC
1 AGAAA-TCA-ATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
* * * *
10363618 ACATA-CAGTCTTATCTCACTGAAGTTGCAGTGGAGCAGAT-
1 AGAAATCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
10363658 AGAA
1 AGAA
10363662 GAAATAATGT
Statistics
Matches: 443, Mismatches: 108, Indels: 106
0.67 0.16 0.16
Matches are distributed among these distances:
39 2 0.00
40 21 0.05
41 128 0.29
42 19 0.04
43 21 0.05
44 243 0.55
45 9 0.02
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (42 bp):
AGAAATCAATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATC
Found at i:10363250 original size:85 final size:81
Alignment explanation
Indices: 10363157--10363657 Score: 280
Period size: 85 Copynumber: 5.9 Consensus size: 81
10363147 AAATCAATCC
10363157 TATCTCCCTGAAGTTGCAGTGGAGCGAATTAAAACCACAAATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGCGAA-TAAAA-C-C-AATCTTATCTCTCTGAAGTTGCAGTA
*
10363222 GAGCAGATCGCATCCAGTCT
62 GAGCAGATCGAATCCAGTCT
* * * *
10363242 TATCTCCCTGAAGTTGTAGTAAAGTAGACGAA-AGAAACCAATCCTATCTCCCTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGT---GGAG-CGAATA-AAACCAATCTTATCTCTCTGAAGTTGCAGT
* ** ** *
10363306 GGAGTGGATTAAAACCACAGATCT
61 AGAGCAGA-TCGAATC-CAG-TCT
* * * ** *
10363330 TATCTCTCTAAAGTTGTAGTAGG-GC-AGATCGCATCCAATCTTATCTC-CTTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGT-GGAGCGA-AT-AAAACCAATCTTATCTCTC-TGAAGTTGCAGTA
* * *
10363392 GAGCAGA-CGAAAGAAACCAATCC
62 GAGCAGATC----GAATCCAGTCT
* * *
10363415 TATCTCCCTGAAATTACAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTA
1 TATCTCCCTGAAGTTGCAGTGGAGC-GAAT-AAAAC-CA-ATCTTATCTCTCTGAAGTTGCAGTA
*
10363480 GAGCAGATCGCATCCAGTCT
62 GAGCAGATCGAATCCAGTCT
* * * *
10363500 TATCTCCCTAAAGTTACAGTGGAGCAGACAGAAGAAACCAATCCTATCTC-CTTGAAGTTGCAGT
1 TATCTCCCTGAAGTTGCAGTGGAGC-GA-A-TA-AAACCAATCTTATCTCTC-TGAAGTTGCAGT
* * ** *
10363564 GGAGCGGATTAAAAACACAGATCT
61 AGAGCAGA-TCGAATC-CAG-TCT
* * * * * *
10363588 TATCTCTCTGAAGTTGCAGTAGAGC-AGATCACATA-CAGTCTTATCTCACTGAAGTTGCAGTGG
1 TATCTCCCTGAAGTTGCAGTGGAGCGA-AT-A-AAACCAATCTTATCTCTCTGAAGTTGCAGTAG
10363651 AGCAGAT
63 AGCAGAT
10363658 AGAAGAAATA
Statistics
Matches: 321, Mismatches: 63, Indels: 65
0.71 0.14 0.14
Matches are distributed among these distances:
83 1 0.00
84 7 0.02
85 185 0.58
86 23 0.07
87 18 0.06
88 81 0.25
89 6 0.02
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.26
Consensus pattern (81 bp):
TATCTCCCTGAAGTTGCAGTGGAGCGAATAAAACCAATCTTATCTCTCTGAAGTTGCAGTAGAGC
AGATCGAATCCAGTCT
Found at i:10363323 original size:129 final size:129
Alignment explanation
Indices: 10362980--10363665 Score: 921
Period size: 129 Copynumber: 5.3 Consensus size: 129
10362970 TTTAAGCCAT
* ** * * *
10362980 CAGTCTTATCTTCCT-AAGCCGTAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTGAAGTT
1 CAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTT
* * * * * * *
10363044 GTAGTGGAGCGAATTAAAACCACAGATTTTATCTCTCTGAAGTTGTAGTAGGGTAGATTGCATC
66 GCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATC
* * ** * * * *
10363108 AAGTCTTATCT-CCTTAAGCAGTAGTGGAGCAGACAGGAGAAATCAATCCTATCTCCCTGAAGTT
1 CAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTT
* *
10363172 GCAGTGGAGCGAATTAAAACCACAAATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATC
66 GCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATC
* * *
10363236 CAGTCTTATCTCCCTGAAGTTGTAGTAAAGTAGAC-GAAAGAAACCAATCCTATCTCCCTGAAGT
1 CAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACAG-AAGAAACCAATCCTATCTCCCTGAAGT
* * * *
10363300 TGCAGTGGAGTGGATTAAAACCACAGATCTTATCTCTCTAAAGTTGTAGTAGGGCAGATCGCATC
65 TGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATC
* * *
10363365 CAATCTTATCTCCTTGAAGTTGCAGTAGAGCAGAC-GAAAGAAACCAATCCTATCTCCCTGAAAT
1 CAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACAG-AAGAAACCAATCCTATCTCCCTGAAGT
* *
10363429 TACAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATC
65 TGCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATC
* * * *
10363494 CAGTCTTATCTCCCTAAAGTTACAGTGGAGCAGACAGAAGAAACCAATCCTATCTCCTTGAAGTT
1 CAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTT
* * *
10363559 GCAGTGGAGCGGATTAAAAACACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCACATA
66 GCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATC
* * *
10363623 CAGTCTTATCTCACTGAAGTTGCAGTGGAGCAGATAGAAGAAA
1 CAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACAGAAGAAA
10363666 TAATGTAACA
Statistics
Matches: 503, Mismatches: 51, Indels: 7
0.90 0.09 0.01
Matches are distributed among these distances:
127 3 0.01
128 125 0.25
129 374 0.74
130 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (129 bp):
CAGTCTTATCTCCCTGAAGTTGCAGTAGAGCAGACAGAAGAAACCAATCCTATCTCCCTGAAGTT
GCAGTGGAGCGGATTAAAACCACAGATCTTATCTCTCTGAAGTTGCAGTAGAGCAGATCGCATC
Found at i:10365116 original size:103 final size:104
Alignment explanation
Indices: 10364872--10365137 Score: 419
Period size: 103 Copynumber: 2.6 Consensus size: 104
10364862 GTTGTACATA
** *
10364872 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
10364937 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
*
10364976 GAGGGGTTGCTAAGTGCTGATTCCCC-AGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGA-TTCATTGGTGGTGCTAAGTGCGATATCCACCGTATC
10365040 TCTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
65 TCTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
10365079 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
10365138 AATAACGGTT
Statistics
Matches: 149, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:10372605 original size:103 final size:104
Alignment explanation
Indices: 10372361--10372626 Score: 426
Period size: 103 Copynumber: 2.6 Consensus size: 104
10372351 GTTGTACATA
** *
10372361 AAGGGGTTGCTGTGTGCTGATTCCCCGATTCATTGGTGGTGCTATGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
* **
10372426 TTGAAATGTGAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* *
10372465 GAGGGGTTGCTAAGTGCTGATTCCCCGGTTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
10372530 CTGAAAT-AAAAAGGGGGTTGCTATGTGCTGATTCCCCC
66 CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
* * *
10372568 AAGGGGTTGCTAAGTGCTGATTCCCCGATTAAGTGGTGGTGCTAAGTGCGAGATCCACC
1 AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACC
10372627 AATAACGGTT
Statistics
Matches: 149, Mismatches: 13, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
103 83 0.56
104 66 0.44
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.30
Consensus pattern (104 bp):
AAGGGGTTGCTAAGTGCTGATTCCCCGATTCATTGGTGGTGCTAAGTGCGATATCCACCGTATCT
CTGAAATGAAAAAGGGGGTTGCTATGTGCTGATTCCCCC
Found at i:10374139 original size:44 final size:44
Alignment explanation
Indices: 10374079--10374191 Score: 145
Period size: 44 Copynumber: 2.6 Consensus size: 44
10374069 CACATCAAAC
* * *
10374079 CTTATCACCCTAAAGTTACAGTGGAGCAGGTTGAAGATACCAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATACCAAT
** * * *
10374123 CTTATCTCCCTGAAGTTACAGCCGAGTAGATTGAAGCTACTAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATACCAAT
*
10374167 CCTATCTCCCTGAAGTTACAGTGGA
1 CTTATCTCCCTGAAGTTACAGTGGA
10374192 ATGGATTAAA
Statistics
Matches: 58, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 58 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.27
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGATACCAAT
Found at i:10375891 original size:24 final size:25
Alignment explanation
Indices: 10375845--10375892 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
10375835 TCGTATTTTG
*
10375845 TTATATATATATACATGCATACATT
1 TTATATATATATACATACATACATT
*
10375870 TTATA-ATATATACATACGTACAT
1 TTATATATATATACATACATACAT
10375893 ATATTTAATG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 16 0.76
25 5 0.24
ACGTcount: A:0.42, C:0.12, G:0.04, T:0.42
Consensus pattern (25 bp):
TTATATATATATACATACATACATT
Found at i:10376068 original size:26 final size:27
Alignment explanation
Indices: 10376022--10376077 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 27
10376012 GTATACATCT
*
10376022 ATACATTTTTATAATACATATATGTAC
1 ATACATTTTTATAATACATATATATAC
** *
10376049 ATACA-TTTTATAATTTATATTTATAC
1 ATACATTTTTATAATACATATATATAC
10376075 ATA
1 ATA
10376078 TATATTTGTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
26 20 0.80
27 5 0.20
ACGTcount: A:0.41, C:0.09, G:0.02, T:0.48
Consensus pattern (27 bp):
ATACATTTTTATAATACATATATATAC
Done.