Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Gbar_D04
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 52479919
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Warning! 336953 characters in sequence are not A, C, G, or T
File 38 of 173
Found at i:10376771 original size:107 final size:106
Alignment explanation
Indices: 10376640--10376842 Score: 300
Period size: 107 Copynumber: 1.9 Consensus size: 106
10376630 AAAAATAATA
* *
10376640 AAGGTAATATTTTACGTTTAGAAATTCGAGAAAACGTGCCCTAATGTGCTGGGTTTCGATTTTTT
1 AAGGTAATATTTTACGTTTAGAAATTCGAGAAAACGTGCCCCAATGTGCTGGGTTTCGA-TTTCT
* *
10376705 CGTTCGA-CCAAATAGCCAAATATCCTTTTAAAATTTTGAAGT
65 CGTT-GAGCCAAATAGCCAAATACCCTCTTAAAATTTTGAAGT
* * *
10376747 AAGGTAATATTTTGCGTTTCGAAATTCGAGAAAGCGTGCCCCAATGTGCTGGGTTTCGATTTCTC
1 AAGGTAATATTTTACGTTTAGAAATTCGAGAAAACGTGCCCCAATGTGCTGGGTTTCGATTTCTC
* *
10376812 GTTTAGCCAAATAGTCAAATACCCTCTTAAA
66 GTTGAGCCAAATAGCCAAATACCCTCTTAAA
10376843 GTTTCAAAGT
Statistics
Matches: 86, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
105 1 0.01
106 30 0.35
107 55 0.64
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.34
Consensus pattern (106 bp):
AAGGTAATATTTTACGTTTAGAAATTCGAGAAAACGTGCCCCAATGTGCTGGGTTTCGATTTCTC
GTTGAGCCAAATAGCCAAATACCCTCTTAAAATTTTGAAGT
Found at i:10385870 original size:24 final size:24
Alignment explanation
Indices: 10385836--10385886 Score: 75
Period size: 24 Copynumber: 2.1 Consensus size: 24
10385826 TTTCTAGAAA
* *
10385836 ATTTAGTATTTATGAGTATAATAT
1 ATTTAGCATTTATGAGCATAATAT
*
10385860 ATTTAGCATTTATTAGCATAATAT
1 ATTTAGCATTTATGAGCATAATAT
10385884 ATT
1 ATT
10385887 CGACTTTGAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.37, C:0.04, G:0.10, T:0.49
Consensus pattern (24 bp):
ATTTAGCATTTATGAGCATAATAT
Found at i:10388680 original size:19 final size:17
Alignment explanation
Indices: 10388615--10388710 Score: 70
Period size: 17 Copynumber: 5.3 Consensus size: 17
10388605 TTTAAAAATA
*
10388615 AAAAATTACAAAA-TATT
1 AAAAATTATAAAATTA-T
* *
10388632 AAAATTTATGTAAACTTAT
1 AAAAATTA--TAAAATTAT
10388651 AAAACATTATAAATATTTAT
1 AAAA-ATTATAAA-A-TTAT
*
10388671 AAAAATTATAAAAATAT
1 AAAAATTATAAAATTAT
10388688 AAAAATT-TAATAAATTAT
1 AAAAATTAT-A-AAATTAT
10388706 AAAAA
1 AAAAA
10388711 AAGTATAAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 15
0.74 0.08 0.17
Matches are distributed among these distances:
16 1 0.02
17 18 0.28
18 16 0.25
19 16 0.25
20 13 0.20
ACGTcount: A:0.61, C:0.03, G:0.01, T:0.34
Consensus pattern (17 bp):
AAAAATTATAAAATTAT
Found at i:10388681 original size:9 final size:9
Alignment explanation
Indices: 10388647--10388710 Score: 78
Period size: 9 Copynumber: 7.0 Consensus size: 9
10388637 TTATGTAAAC
10388647 TTATAAAACA
1 TTATAAAA-A
*
10388657 TTATAAATAT
1 TTATAAA-AA
10388667 TTATAAAAA
1 TTATAAAAA
10388676 TTATAAAAA
1 TTATAAAAA
10388685 -TATAAAAA
1 TTATAAAAA
10388693 TT-TAATAAA
1 TTATAA-AAA
10388702 TTATAAAAA
1 TTATAAAAA
10388711 AAGTATAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 9
0.81 0.03 0.15
Matches are distributed among these distances:
8 11 0.23
9 19 0.40
10 17 0.35
11 1 0.02
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.36
Consensus pattern (9 bp):
TTATAAAAA
Found at i:10388717 original size:29 final size:28
Alignment explanation
Indices: 10388624--10388720 Score: 99
Period size: 30 Copynumber: 3.4 Consensus size: 28
10388614 AAAAAATTAC
* *
10388624 AAAATATTAAAATTTATGTAAACTTATAA
1 AAAATATAAAAATTTATATAAA-TTATAA
* * *
10388653 AACATTATAAATATTTATAAAAATTAT-A
1 AA-AATATAAAAATTTATATAAATTATAA
10388681 AAAATATAAAAATTTA-ATAAATTATAAA
1 AAAATATAAAAATTTATATAAATTAT-AA
10388709 AAAAGTATAAAA
1 AAAA-TATAAAA
10388721 TTAATATTGA
Statistics
Matches: 56, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
26 8 0.14
27 12 0.21
28 8 0.14
29 13 0.23
30 15 0.27
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (28 bp):
AAAATATAAAAATTTATATAAATTATAA
Found at i:10388804 original size:18 final size:17
Alignment explanation
Indices: 10388783--10388856 Score: 59
Period size: 18 Copynumber: 4.4 Consensus size: 17
10388773 TTAGAATAAA
10388783 TAAATATCATATAAATAT
1 TAAATAT-ATATAAATAT
* *
10388801 TAAAAATATTAAAAATCAT
1 TAAATATA-TATAAAT-AT
10388820 TAAAT-TAT-TAAATTAT
1 TAAATATATATAAA-TAT
10388836 T-AA-ATAT-TAAATAT
1 TAAATATATATAAATAT
10388850 TAAATAT
1 TAAATAT
10388857 TAAAATTTAT
Statistics
Matches: 46, Mismatches: 4, Indels: 14
0.72 0.06 0.22
Matches are distributed among these distances:
14 4 0.09
15 11 0.24
16 8 0.17
17 3 0.07
18 14 0.30
19 6 0.13
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAATATATATAAATAT
Found at i:10388845 original size:7 final size:7
Alignment explanation
Indices: 10388794--10388860 Score: 71
Period size: 7 Copynumber: 8.6 Consensus size: 7
10388784 AAATATCATA
10388794 TAAATAT
1 TAAATAT
10388801 TAAAAATAT
1 T--AAATAT
10388810 TAAAAATCAT
1 T--AAAT-AT
10388820 TAAATTAT
1 TAAA-TAT
10388828 TAAATTAT
1 TAAA-TAT
10388836 TAAATAT
1 TAAATAT
10388843 TAAATAT
1 TAAATAT
10388850 TAAATAT
1 TAAATAT
10388857 TAAA
1 TAAA
10388861 ATTTATATAA
Statistics
Matches: 56, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
7 22 0.39
8 17 0.30
9 14 0.25
10 3 0.05
ACGTcount: A:0.58, C:0.01, G:0.00, T:0.40
Consensus pattern (7 bp):
TAAATAT
Found at i:10389032 original size:9 final size:9
Alignment explanation
Indices: 10388857--10389063 Score: 70
Period size: 9 Copynumber: 21.8 Consensus size: 9
10388847 TATTAAATAT
*
10388857 TAAAATTTA
1 TAAAAATTA
*
10388866 TATAAACTTA
1 TA-AAAATTA
*
10388876 TAAAATTTATA
1 TAAAA-AT-TA
*
10388887 TAAGAAATGA
1 TAA-AAATTA
*
10388897 -AAAAATCA
1 TAAAAATTA
*
10388905 TTAAAACTTA
1 -TAAAAATTA
*
10388915 TAAATATTA
1 TAAAAATTA
10388924 TAAAAA-TA
1 TAAAAATTA
10388932 TTAAAAATCTA
1 -TAAAAAT-TA
*
10388943 -ATAAATTA
1 TAAAAATTA
10388951 TCAAAAATTA
1 T-AAAAATTA
*
10388961 T-CAAATATA
1 TAAAAAT-TA
*
10388970 TATATAATTA
1 TA-AAAATTA
10388980 -ATAAAATATA
1 TA-AAAAT-TA
10388990 TTCAAAATATT-
1 -T-AAAA-ATTA
**
10389001 TAAACTTTTA
1 TAAA-AATTA
10389011 TAAAAATTCA
1 TAAAAATT-A
10389021 TAAAAATTA
1 TAAAAATTA
*
10389030 TAAACAA-TG
1 TAAA-AATTA
10389039 TAAAAATTA
1 TAAAAATTA
10389048 TAATAAATT-
1 TAA-AAATTA
10389057 TAAAAAT
1 TAAAAAT
10389064 AAAAACATAT
Statistics
Matches: 151, Mismatches: 22, Indels: 51
0.67 0.10 0.23
Matches are distributed among these distances:
8 19 0.13
9 63 0.42
10 49 0.32
11 11 0.07
12 6 0.04
13 3 0.02
ACGTcount: A:0.58, C:0.05, G:0.01, T:0.36
Consensus pattern (9 bp):
TAAAAATTA
Found at i:10389044 original size:18 final size:16
Alignment explanation
Indices: 10389021--10389096 Score: 64
Period size: 18 Copynumber: 4.4 Consensus size: 16
10389011 TAAAAATTCA
10389021 TAAAAATTATAAACAAT
1 TAAAAATTATAAA-AAT
10389038 GTAAAAATTATAATAAATT
1 -TAAAAATTATAA-AAA-T
*
10389057 TAAAAA-TAAAAACATAT
1 TAAAAATTATAAA-A-AT
* *
10389074 TAAAAAATGTAAAAAT
1 TAAAAATTATAAAAAT
10389090 TAAAAAT
1 TAAAAAT
10389097 GATATAAAAG
Statistics
Matches: 49, Mismatches: 4, Indels: 12
0.75 0.06 0.18
Matches are distributed among these distances:
16 9 0.18
17 13 0.27
18 25 0.51
19 2 0.04
ACGTcount: A:0.66, C:0.03, G:0.03, T:0.29
Consensus pattern (16 bp):
TAAAAATTATAAAAAT
Found at i:10389105 original size:26 final size:25
Alignment explanation
Indices: 10389011--10389105 Score: 70
Period size: 27 Copynumber: 3.6 Consensus size: 25
10389001 TAAACTTTTA
10389011 TAAAAAT-TCATAAAAATTATAAACAAT
1 TAAAAATAT-ATAAAAA-TATAAA-AAT
*
10389038 GTAAAAAT-TATAATAAATTTAAAAA-
1 -TAAAAATATATAA-AAATATAAAAAT
* *
10389063 TAAAAACATATTAAAAAATGTAAAAAT
1 TAAAAATATA-T-AAAAATATAAAAAT
10389090 TAAAAATGATATAAAA
1 TAAAAAT-ATATAAAA
10389106 GAGTTATTTA
Statistics
Matches: 57, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
24 6 0.11
25 2 0.04
26 17 0.30
27 18 0.32
28 14 0.25
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.28
Consensus pattern (25 bp):
TAAAAATATATAAAAATATAAAAAT
Found at i:10389377 original size:21 final size:21
Alignment explanation
Indices: 10389344--10389391 Score: 62
Period size: 22 Copynumber: 2.3 Consensus size: 21
10389334 ATTTTTATAA
* *
10389344 GTTTTTAAGAATTTT-AATTT
1 GTTTTTAAAAATTTTAAATAT
10389364 GTTTTTATAAAATTTTAAATAT
1 GTTTTTA-AAAATTTTAAATAT
10389386 GTTTTT
1 GTTTTT
10389392 TTAATTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 7 0.29
21 7 0.29
22 10 0.42
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.60
Consensus pattern (21 bp):
GTTTTTAAAAATTTTAAATAT
Found at i:10389391 original size:22 final size:20
Alignment explanation
Indices: 10389334--10389391 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
10389324 CAATTTTATG
* * *
10389334 ATTTTTATAAGTTTTTAAGA
1 ATTTTAATATGTTTTTAAAA
*
10389354 ATTTTAATTTGTTTTTATAAA
1 ATTTTAATATGTTTTTA-AAA
10389375 ATTTTAAATATGTTTTT
1 ATTTT-AATATGTTTTT
10389392 TTAATTTTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 14 0.45
21 7 0.23
22 10 0.32
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (20 bp):
ATTTTAATATGTTTTTAAAA
Found at i:10389472 original size:28 final size:26
Alignment explanation
Indices: 10389387--10389511 Score: 78
Period size: 28 Copynumber: 4.5 Consensus size: 26
10389377 TTTAAATATG
**
10389387 TTTTTT-TAATTTTATAAAAATTTATA
1 TTTTTTATAATTTTAT-AATTTTTATA
*
10389413 -TTTTTATAATATTTA-AAGTTTATATTA
1 TTTTTTATAAT-TTTATAA-TTTTTA-TA
10389440 TTTTTTATATATTTTATAATTTTTATA
1 TTTTTTATA-ATTTTATAATTTTTATA
* *
10389467 TGTTTTATACCAATTTTAATATGTTTTTA-A
1 T-TTTT-TA-TAATTTT-ATA-ATTTTTATA
10389497 TATTTTTATAATTTT
1 T-TTTTTATAATTTT
10389512 TCTGATTTTT
Statistics
Matches: 79, Mismatches: 8, Indels: 22
0.72 0.07 0.20
Matches are distributed among these distances:
25 7 0.09
26 7 0.09
27 9 0.11
28 27 0.34
29 13 0.16
30 10 0.13
31 6 0.08
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (26 bp):
TTTTTTATAATTTTATAATTTTTATA
Found at i:10389483 original size:21 final size:18
Alignment explanation
Indices: 10389407--10389502 Score: 72
Period size: 18 Copynumber: 5.2 Consensus size: 18
10389397 TTTATAAAAA
*
10389407 TTTATAT-TTTTATAATA
1 TTTATATGTTTTATAATT
* *
10389424 TTTA-AAGTTTATATTATTT
1 TTTATATGTTT-TA-TAATT
*
10389443 TTTATATATTTTATAATT
1 TTTATATGTTTTATAATT
10389461 TTTATATGTTTTATACCAATT
1 TTTATATGTTTTAT---AATT
*
10389482 TTAATATGTTTT-TAATAT
1 TTTATATGTTTTATAAT-T
10389500 TTT
1 TTT
10389503 TATAATTTTT
Statistics
Matches: 62, Mismatches: 9, Indels: 15
0.72 0.10 0.17
Matches are distributed among these distances:
16 1 0.02
17 10 0.16
18 22 0.35
19 9 0.15
20 5 0.08
21 15 0.24
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.64
Consensus pattern (18 bp):
TTTATATGTTTTATAATT
Found at i:10389510 original size:9 final size:9
Alignment explanation
Indices: 10389407--10389523 Score: 55
Period size: 9 Copynumber: 12.6 Consensus size: 9
10389397 TTTATAAAAA
10389407 TTTAT-ATT
1 TTTATAATT
*
10389415 TTTATAATA
1 TTTATAATT
10389424 TTTA-AAGTT
1 TTTATAA-TT
* *
10389433 TATATTATT
1 TTTATAATT
10389442 TTT-TATATAT
1 TTTATA-AT-T
10389452 TTTATAATT
1 TTTATAATT
10389461 TTTAT-ATGT
1 TTTATAAT-T
10389470 TTTATACCAATT
1 TTTAT---AATT
* *
10389482 TTAATATGTT
1 TTTATA-ATT
10389492 TTTA-ATATT
1 TTTATA-ATT
10389501 TTTATAATT
1 TTTATAATT
* *
10389510 TTTCTGATT
1 TTTATAATT
10389519 TTTAT
1 TTTAT
10389524 TTTATTTTTT
Statistics
Matches: 83, Mismatches: 13, Indels: 25
0.69 0.11 0.21
Matches are distributed among these distances:
8 10 0.12
9 51 0.61
10 13 0.16
11 2 0.02
12 5 0.06
13 2 0.02
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (9 bp):
TTTATAATT
Found at i:10399069 original size:31 final size:32
Alignment explanation
Indices: 10399034--10399097 Score: 103
Period size: 31 Copynumber: 2.0 Consensus size: 32
10399024 TTTACTTAAT
*
10399034 ATCTTAATCCGTAGAAA-TCCTAAATTATGCA
1 ATCTTAATCCATAGAAATTCCTAAATTATGCA
*
10399065 ATCTTGATCCATAGAAATTCCTAAATTATGCA
1 ATCTTAATCCATAGAAATTCCTAAATTATGCA
10399097 A
1 A
10399098 ATATCTCTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 15 0.50
32 15 0.50
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (32 bp):
ATCTTAATCCATAGAAATTCCTAAATTATGCA
Found at i:10399872 original size:10 final size:10
Alignment explanation
Indices: 10399846--10399887 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
10399836 GATCCCCTAC
*
10399846 ATATATCATA
1 ATATATCACA
10399856 TATATATCACA
1 -ATATATCACA
10399867 ATATATCACA
1 ATATATCACA
*
10399877 CTATATCACA
1 ATATATCACA
10399887 A
1 A
10399888 GACTTGTGAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
10 19 0.68
11 9 0.32
ACGTcount: A:0.48, C:0.19, G:0.00, T:0.33
Consensus pattern (10 bp):
ATATATCACA
Found at i:10400787 original size:22 final size:22
Alignment explanation
Indices: 10400753--10400800 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
10400743 CCCCCTTCCC
* *
10400753 CTTTCTTTCATTTGTTTGTTTT
1 CTTTCTTTCATTTATTTGCTTT
10400775 CTTTCGTTT-ATTTATTTGCTTT
1 CTTTC-TTTCATTTATTTGCTTT
10400797 CTTT
1 CTTT
10400801 TTTATGCAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 20 0.87
23 3 0.13
ACGTcount: A:0.06, C:0.15, G:0.08, T:0.71
Consensus pattern (22 bp):
CTTTCTTTCATTTATTTGCTTT
Found at i:10401336 original size:27 final size:28
Alignment explanation
Indices: 10401288--10401344 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 28
10401278 ATAATTATTT
* *
10401288 TTTATAGTATAATAGCTTGAACTAATTA
1 TTTATAGTATAATAACTAGAACTAATTA
*
10401316 TTTATA-TTTAATAACTAGAACTAATTA
1 TTTATAGTATAATAACTAGAACTAATTA
10401343 TT
1 TT
10401345 CCATTCATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 20 0.77
28 6 0.23
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.46
Consensus pattern (28 bp):
TTTATAGTATAATAACTAGAACTAATTA
Found at i:10403022 original size:5 final size:5
Alignment explanation
Indices: 10403012--10403043 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
10403002 AAGAAGATAG
*
10403012 AAATA AAATA AAATA AAATA AAACA AAATA AA
1 AAATA AAATA AAATA AAATA AAATA AAATA AA
10403044 GAGAGAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.16
Consensus pattern (5 bp):
AAATA
Found at i:10403032 original size:15 final size:15
Alignment explanation
Indices: 10403012--10403057 Score: 56
Period size: 15 Copynumber: 3.0 Consensus size: 15
10403002 AAGAAGATAG
*
10403012 AAATAAAATAAAATA
1 AAATAAAACAAAATA
10403027 AAATAAAACAAAATA
1 AAATAAAACAAAATA
* *
10403042 AAGAGAGAACAAAATA
1 AA-ATAAAACAAAATA
10403058 GAAAAATAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 16 0.59
16 11 0.41
ACGTcount: A:0.76, C:0.04, G:0.07, T:0.13
Consensus pattern (15 bp):
AAATAAAACAAAATA
Found at i:10405591 original size:27 final size:28
Alignment explanation
Indices: 10405539--10405591 Score: 72
Period size: 27 Copynumber: 1.9 Consensus size: 28
10405529 AAAATAATTA
*
10405539 AAATTAAATATATTAATAATTTAAGTGT
1 AAATTAAATATATTAATAATTAAAGTGT
* *
10405567 AAATTAATTAT-TTTATAATTAAAGT
1 AAATTAAATATATTAATAATTAAAGT
10405592 ATGAATTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 12 0.55
28 10 0.45
ACGTcount: A:0.49, C:0.00, G:0.06, T:0.45
Consensus pattern (28 bp):
AAATTAAATATATTAATAATTAAAGTGT
Found at i:10405598 original size:27 final size:28
Alignment explanation
Indices: 10405539--10405598 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 28
10405529 AAAATAATTA
* *
10405539 AAATTAAATATATTAATAATTTAAGTGT
1 AAATTAAATATATTAATAATTAAAGTAT
* *
10405567 AAATTAATTAT-TTTATAATTAAAGTAT
1 AAATTAAATATATTAATAATTAAAGTAT
*
10405594 GAATT
1 AAATT
10405599 TCAATAAAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
27 17 0.63
28 10 0.37
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (28 bp):
AAATTAAATATATTAATAATTAAAGTAT
Found at i:10406403 original size:3 final size:3
Alignment explanation
Indices: 10406358--10406384 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
10406348 GTAGCAGTAG
10406358 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
10406385 AGGAAATATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:10406412 original size:9 final size:10
Alignment explanation
Indices: 10406358--10406413 Score: 50
Period size: 9 Copynumber: 5.9 Consensus size: 10
10406348 GTAGCAGTAG
10406358 TAATAAT-AA
1 TAATAATAAA
10406367 TAATAAT-AA
1 TAATAATAAA
10406376 TAATAATAAA
1 TAATAATAAA
*
10406386 GGAA-ATATAAA
1 -TAATA-ATAAA
10406397 -AATAATAAA
1 TAATAATAAA
10406406 TAA-AATAA
1 TAATAATAA
10406414 CTAAAAAGAA
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
9 28 0.68
10 6 0.15
11 7 0.17
ACGTcount: A:0.70, C:0.00, G:0.04, T:0.27
Consensus pattern (10 bp):
TAATAATAAA
Found at i:10407909 original size:47 final size:47
Alignment explanation
Indices: 10407840--10407934 Score: 190
Period size: 47 Copynumber: 2.0 Consensus size: 47
10407830 TCGCAATCAA
10407840 TATTATCATGCTAAAGTCATCCCAAATTTTAGCTTTGTTAGGCATTG
1 TATTATCATGCTAAAGTCATCCCAAATTTTAGCTTTGTTAGGCATTG
10407887 TATTATCATGCTAAAGTCATCCCAAATTTTAGCTTTGTTAGGCATTG
1 TATTATCATGCTAAAGTCATCCCAAATTTTAGCTTTGTTAGGCATTG
10407934 T
1 T
10407935 TGTAGGATTT
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 48 1.00
ACGTcount: A:0.27, C:0.17, G:0.15, T:0.41
Consensus pattern (47 bp):
TATTATCATGCTAAAGTCATCCCAAATTTTAGCTTTGTTAGGCATTG
Found at i:10410161 original size:30 final size:30
Alignment explanation
Indices: 10410092--10410161 Score: 72
Period size: 31 Copynumber: 2.3 Consensus size: 30
10410082 CGTTAGCAAT
*
10410092 TAATTAATTTTTTTAAATTAAAAATATTAA
1 TAATTATTTTTTTTAAATTAAAAATATTAA
* *
10410122 AAATATATTTTTTTATAAATTTAATAA-ATT-A
1 TAAT-TATTTTTTT-TAAA-TTAAAAATATTAA
10410153 TAATTATTT
1 TAATTATTT
10410162 AAAATAGTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
30 8 0.24
31 12 0.36
32 7 0.21
33 6 0.18
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (30 bp):
TAATTATTTTTTTTAAATTAAAAATATTAA
Found at i:10426224 original size:26 final size:25
Alignment explanation
Indices: 10426176--10426224 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
10426166 ATTAAAAAGT
*
10426176 AATAATACATAAAAGAAAGGAAAAC
1 AATAATACATAAAAGAAAAGAAAAC
10426201 AATAATACAATAAAA-AAATAGAAA
1 AATAATAC-ATAAAAGAAA-AGAAA
10426225 TGTGAATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 11 0.52
26 10 0.48
ACGTcount: A:0.71, C:0.06, G:0.08, T:0.14
Consensus pattern (25 bp):
AATAATACATAAAAGAAAAGAAAAC
Found at i:10426687 original size:3 final size:3
Alignment explanation
Indices: 10426670--10426703 Score: 52
Period size: 3 Copynumber: 11.3 Consensus size: 3
10426660 TAGAATTTTA
10426670 AAT AA- AAT AAAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT A
10426704 TGTTATTTTC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
2 2 0.07
3 24 0.83
4 3 0.10
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (3 bp):
AAT
Found at i:10437418 original size:20 final size:21
Alignment explanation
Indices: 10437381--10437420 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
10437371 TTAATCCAAA
10437381 TTTAATTATTACAAAATATTT
1 TTTAATTATTACAAAATATTT
*
10437402 TTTAATT-TTATAAAATATT
1 TTTAATTATTACAAAATATT
10437421 AAACATTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (21 bp):
TTTAATTATTACAAAATATTT
Found at i:10443205 original size:19 final size:19
Alignment explanation
Indices: 10443154--10443206 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
10443144 ATGGTATTAT
*
10443154 ATTTTTTGAAAATATTTATGT
1 ATTTTTT-AAAAT-TTTATGA
*
10443175 A-TTTTTATAAATTTTTTGA
1 ATTTTTTA-AAATTTTATGA
10443194 ATTTTTTAAAATT
1 ATTTTTTAAAATT
10443207 AAAATTTATT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
19 12 0.43
20 15 0.54
21 1 0.04
ACGTcount: A:0.34, C:0.00, G:0.06, T:0.60
Consensus pattern (19 bp):
ATTTTTTAAAATTTTATGA
Found at i:10448271 original size:29 final size:29
Alignment explanation
Indices: 10448229--10448287 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
10448219 CACACTTGTC
* *
10448229 TATACATAAATTTTGTTGTTAATAAATAA
1 TATACATAAATTTTGATGTGAATAAATAA
*
10448258 TATATATAAATTTTGATGTGAATAAATAA
1 TATACATAAATTTTGATGTGAATAAATAA
10448287 T
1 T
10448288 TGAAGCATAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (29 bp):
TATACATAAATTTTGATGTGAATAAATAA
Found at i:10448907 original size:28 final size:30
Alignment explanation
Indices: 10448866--10448943 Score: 101
Period size: 30 Copynumber: 2.7 Consensus size: 30
10448856 AAATTTAGGG
*
10448866 AAAAG-ATAGATTGGGATTAAGGA-AA-AA
1 AAAAGAATCGATTGGGATTAAGGAGAAGAA
10448893 AAAAGAATCGATTGGGATTAAGGAGAAGAA
1 AAAAGAATCGATTGGGATTAAGGAGAAGAA
*
10448923 AAGAA-AATCGATTAGGATTAA
1 AA-AAGAATCGATTGGGATTAA
10448944 TATTTTAGGG
Statistics
Matches: 45, Mismatches: 2, Indels: 5
0.87 0.04 0.10
Matches are distributed among these distances:
27 5 0.11
28 17 0.38
29 2 0.04
30 19 0.42
31 2 0.04
ACGTcount: A:0.53, C:0.03, G:0.26, T:0.19
Consensus pattern (30 bp):
AAAAGAATCGATTGGGATTAAGGAGAAGAA
Found at i:10449656 original size:199 final size:199
Alignment explanation
Indices: 10449313--10449687 Score: 470
Period size: 199 Copynumber: 1.9 Consensus size: 199
10449303 TTTGGTTATT
* * * * * *
10449313 AAAGTGTATGGCGGGTTTGGATTGTTCTAAAGTTATTATCTGCTATGTGCATACAAATAGCTTTA
1 AAAGTGTATGACAGATTTGGATTGTTATAAAGATATTATCTGCTATGTGCATACAAATAGCCTTA
* * * * *
10449378 GGAAATAGATAAACTAATTCATATTTGTATGACTACTTATATCAAGCTTCTTTAGGTTCAAATAT
66 GGAAAGAGACAAACTAATTCATATTTGTATGACAACTAATATCAAGCTTATTTAGGTTCAAATAT
*
10449443 GACAAATAAGTTCCTAATTGTCAAGAACATTTTTTAAATGTTGATTCAAATATGATTATTGTTTG
131 GACAAATAAGTTCCTAATTGTCAAAAACATTTTTTAAATGTTGATTCAAATATGATTATTGTTTG
10449508 TATC
196 TATC
* * * * *
10449512 AAAGTGTATGACAGATTTGGATTTTTATAAAGATATTGTGTGCCT-TGTGCATACAGATATCCTT
1 AAAGTGTATGACAGATTTGGATTGTTATAAAGATATTATCTG-CTATGTGCATACAAATAGCCTT
* * *
10449576 AGGAAAGAGACAAA-TCAATTCCTATTTTTATGACCAAC-AATATCAAGCTTATTT-GGATTTAA
65 AGGAAAGAGACAAACT-AATTCATATTTGTATGA-CAACTAATATCAAGCTTATTTAGG-TTCAA
* * * *
10449638 ATATGACAAATTAGTTCCTAGTTGTTAAAAATATTTTTTAAATGTTGATT
127 ATATGACAAATAAGTTCCTAATTGTCAAAAACATTTTTTAAATGTTGATT
10449688 ATGATTATTG
Statistics
Matches: 148, Mismatches: 24, Indels: 8
0.82 0.13 0.04
Matches are distributed among these distances:
198 3 0.02
199 140 0.95
200 5 0.03
ACGTcount: A:0.34, C:0.11, G:0.16, T:0.39
Consensus pattern (199 bp):
AAAGTGTATGACAGATTTGGATTGTTATAAAGATATTATCTGCTATGTGCATACAAATAGCCTTA
GGAAAGAGACAAACTAATTCATATTTGTATGACAACTAATATCAAGCTTATTTAGGTTCAAATAT
GACAAATAAGTTCCTAATTGTCAAAAACATTTTTTAAATGTTGATTCAAATATGATTATTGTTTG
TATC
Found at i:10452387 original size:23 final size:23
Alignment explanation
Indices: 10452361--10452458 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
10452351 ATAAGTGCCA
10452361 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
10452384 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
10452407 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
10452429 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
10452452 CACTGAT
1 CACTGAT
10452459 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:10452426 original size:45 final size:45
Alignment explanation
Indices: 10452368--10452456 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
10452358 CCACACTGAT
* *
10452368 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
10452413 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
10452457 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:10459286 original size:23 final size:23
Alignment explanation
Indices: 10459260--10459357 Score: 162
Period size: 23 Copynumber: 4.3 Consensus size: 23
10459250 ATAAGTGCCA
10459260 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
10459283 CACTGATATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
* *
10459306 CACTG-GATGTAGCCAAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
*
10459328 CACTGAAATGTAGCCGAAGCTAC
1 CACTGATATGTAGCCGAAGCTAC
10459351 CACTGAT
1 CACTGAT
10459358 CAATAACACT
Statistics
Matches: 69, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
22 20 0.29
23 49 0.71
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (23 bp):
CACTGATATGTAGCCGAAGCTAC
Found at i:10459325 original size:45 final size:45
Alignment explanation
Indices: 10459267--10459355 Score: 160
Period size: 45 Copynumber: 2.0 Consensus size: 45
10459257 CCACACTGAT
* *
10459267 ATGTAGCCGAAGCTACCACTGATATGTAGCCGAAGCTACCACTGG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
10459312 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
1 ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTG
10459356 ATCAATAACA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.31, C:0.27, G:0.22, T:0.19
Consensus pattern (45 bp):
ATGTAGCCAAAGCTACCACTGAAATGTAGCCGAAGCTACCACTGG
Found at i:10461359 original size:21 final size:21
Alignment explanation
Indices: 10461335--10461378 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
10461325 CAAGTGGTTG
*
10461335 CCCCAACTCATCAAGAAGCTA
1 CCCCAACTCACCAAGAAGCTA
*
10461356 CCCCAACTTACCAAGAAGCTA
1 CCCCAACTCACCAAGAAGCTA
10461377 CC
1 CC
10461379 TTAAGAAAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.36, C:0.41, G:0.09, T:0.14
Consensus pattern (21 bp):
CCCCAACTCACCAAGAAGCTA
Found at i:10463457 original size:11 final size:11
Alignment explanation
Indices: 10463441--10463471 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
10463431 TGTTATTGTT
10463441 GATTTAATTCA
1 GATTTAATTCA
*
10463452 GATTTAATTCG
1 GATTTAATTCA
10463463 GATTTAATT
1 GATTTAATT
10463472 TTATTTTTGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.32, C:0.06, G:0.13, T:0.48
Consensus pattern (11 bp):
GATTTAATTCA
Found at i:10465324 original size:14 final size:14
Alignment explanation
Indices: 10465305--10465331 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10465295 CATTTTTTTC
10465305 TAACGATACTATTG
1 TAACGATACTATTG
10465319 TAACGATACTATT
1 TAACGATACTATT
10465332 CAAACATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (14 bp):
TAACGATACTATTG
Found at i:10466683 original size:61 final size:62
Alignment explanation
Indices: 10466478--10466700 Score: 396
Period size: 62 Copynumber: 3.6 Consensus size: 62
10466468 AGATTAATTG
*
10466478 CAACATTAAAACTTGGAACAAACTTTGTAACATAAATTTTGTAATATAAATGAAATACATTA
1 CAACATTAAAACTTGGAACAAACTTTGTAACATAAATTTTGTAATATAAATTAAATACATTA
10466540 CAACATTAAAACTTGGAACAAACTTTGTAACATAAATTTTGTAATATAAATTAAATACATTA
1 CAACATTAAAACTTGGAACAAACTTTGTAACATAAATTTTGTAATATAAATTAAATACATTA
*
10466602 CAACATTAAAACTTGGAACAAACTTTGTAATATAAATTTTGTTAAT-T-AATTAAATACATTA
1 CAACATTAAAACTTGGAACAAACTTTGTAACATAAATTTTG-TAATATAAATTAAATACATTA
*
10466663 CAACATTAAAACTTGGAACAAACTTTGTAATATAAATT
1 CAACATTAAAACTTGGAACAAACTTTGTAACATAAATT
10466701 AGGTACATTG
Statistics
Matches: 158, Mismatches: 2, Indels: 3
0.97 0.01 0.02
Matches are distributed among these distances:
61 52 0.33
62 102 0.65
63 4 0.03
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.34
Consensus pattern (62 bp):
CAACATTAAAACTTGGAACAAACTTTGTAACATAAATTTTGTAATATAAATTAAATACATTA
Found at i:10466699 original size:123 final size:124
Alignment explanation
Indices: 10466478--10466700 Score: 396
Period size: 123 Copynumber: 1.8 Consensus size: 124
10466468 AGATTAATTG
10466478 CAACATTAAAACTTGGAACAAACTTTGTAACATAAATTTTGTAATATAAATGAAATACATTACAA
1 CAACATTAAAACTTGGAACAAACTTTGTAACATAAATTTTGTAATATAAATGAAATACATTACAA
10466543 CATTAAAACTTGGAACAAACTTTGTAACATAAATTTTGTAATATAAATTAAATACATTA
66 CATTAAAACTTGGAACAAACTTTGTAACATAAATTTTGTAATATAAATTAAATACATTA
* *
10466602 CAACATTAAAACTTGGAACAAACTTTGTAATATAAATTTTGTTAAT-T-AATTAAATACATTACA
1 CAACATTAAAACTTGGAACAAACTTTGTAACATAAATTTTG-TAATATAAATGAAATACATTACA
*
10466665 ACATTAAAACTTGGAACAAACTTTGTAATATAAATT
65 ACATTAAAACTTGGAACAAACTTTGTAACATAAATT
10466701 AGGTACATTG
Statistics
Matches: 95, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
123 50 0.53
124 41 0.43
125 4 0.04
ACGTcount: A:0.48, C:0.11, G:0.07, T:0.34
Consensus pattern (124 bp):
CAACATTAAAACTTGGAACAAACTTTGTAACATAAATTTTGTAATATAAATGAAATACATTACAA
CATTAAAACTTGGAACAAACTTTGTAACATAAATTTTGTAATATAAATTAAATACATTA
Found at i:10470408 original size:21 final size:21
Alignment explanation
Indices: 10470384--10470450 Score: 62
Period size: 21 Copynumber: 3.2 Consensus size: 21
10470374 CAGAAGCACG
* *
10470384 TAAGTGCTAAACAAAAACCCA
1 TAAGAGCTGAACAAAAACCCA
* * * * *
10470405 TAAGGGTTGAACGAAAGCGCA
1 TAAGAGCTGAACAAAAACCCA
*
10470426 TAAGAGCTGAACAGAAACCCA
1 TAAGAGCTGAACAAAAACCCA
10470447 TAAG
1 TAAG
10470451 GGTTAAATTG
Statistics
Matches: 34, Mismatches: 12, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.46, C:0.19, G:0.21, T:0.13
Consensus pattern (21 bp):
TAAGAGCTGAACAAAAACCCA
Found at i:10470473 original size:42 final size:42
Alignment explanation
Indices: 10470389--10470494 Score: 124
Period size: 42 Copynumber: 2.5 Consensus size: 42
10470379 GCACGTAAGT
* * *
10470389 GCTAAACAAAAACCCATAAGGGTTGAACGAAAGCGCATAAGA
1 GCTAAACAGAAACCCATAAGGGTTAAACGAAAGCGCAAAAGA
* * *
10470431 GCTGAACAGAAACCCATAAGGGTTAAATTG-AAGCTCAAAAGA
1 GCTAAACAGAAACCCATAAGGGTTAAA-CGAAAGCGCAAAAGA
*
10470473 GCTAAACGGAAACCCATTAAGG
1 GCTAAACAGAAACCCA-TAAGG
10470495 TTGAACAGAA
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
42 48 0.89
43 6 0.11
ACGTcount: A:0.45, C:0.19, G:0.22, T:0.14
Consensus pattern (42 bp):
GCTAAACAGAAACCCATAAGGGTTAAACGAAAGCGCAAAAGA
Found at i:10470628 original size:24 final size:24
Alignment explanation
Indices: 10470596--10470642 Score: 85
Period size: 24 Copynumber: 2.0 Consensus size: 24
10470586 TACTTGGGTA
*
10470596 ATTTTCCGTCAATTCATCCTTTGC
1 ATTTACCGTCAATTCATCCTTTGC
10470620 ATTTACCGTCAATTCATCCTTTG
1 ATTTACCGTCAATTCATCCTTTG
10470643 TCACAGAACG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.19, C:0.28, G:0.09, T:0.45
Consensus pattern (24 bp):
ATTTACCGTCAATTCATCCTTTGC
Found at i:10472655 original size:6 final size:6
Alignment explanation
Indices: 10472638--10472673 Score: 63
Period size: 6 Copynumber: 6.0 Consensus size: 6
10472628 ATTCTATTTG
*
10472638 AAAATA ACAATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
10472674 CCTTTTCTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:10472825 original size:27 final size:27
Alignment explanation
Indices: 10472795--10472851 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
10472785 GCTGCTTAGT
*
10472795 AGATAGGGGTCACCAGTGCCACCTATC
1 AGATAGGGATCACCAGTGCCACCTATC
** *
10472822 AGATAGGGATCACTGGTGCCGCCTATC
1 AGATAGGGATCACCAGTGCCACCTATC
10472849 AGA
1 AGA
10472852 AAGACATCAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.28, T:0.19
Consensus pattern (27 bp):
AGATAGGGATCACCAGTGCCACCTATC
Found at i:10476166 original size:6 final size:6
Alignment explanation
Indices: 10476155--10476195 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
10476145 AAACTCTGTT
*
10476155 CAAACC CAAACC CAAACC CAAACC CAAACC CAAACC TAAAC
1 CAAACC CAAACC CAAACC CAAACC CAAACC CAAACC CAAAC
10476196 GCGCGCGCGC
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 34 1.00
ACGTcount: A:0.51, C:0.46, G:0.00, T:0.02
Consensus pattern (6 bp):
CAAACC
Found at i:10478152 original size:20 final size:20
Alignment explanation
Indices: 10478129--10478179 Score: 61
Period size: 18 Copynumber: 2.6 Consensus size: 20
10478119 TTCCTATATC
*
10478129 ATTAAATTATTTTCAAATTA
1 ATTAAATTATTTACAAATTA
*
10478149 ATTAAA-TA-TCACAAATTA
1 ATTAAATTATTTACAAATTA
10478167 ATTATAATTATTT
1 ATTA-AATTATTT
10478180 GTCTTCATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
18 12 0.48
19 4 0.16
20 8 0.32
21 1 0.04
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (20 bp):
ATTAAATTATTTACAAATTA
Found at i:10478394 original size:37 final size:36
Alignment explanation
Indices: 10478353--10478448 Score: 144
Period size: 33 Copynumber: 2.7 Consensus size: 36
10478343 TACACACCCA
10478353 AAGACCAAATTGAATAAATAAATAAATAACACATTTG
1 AAGACCAAATTGAATAAATAAATAAA-AACACATTTG
*
10478390 AAGACCAAGTTGAATAAAT--A-AAAAACACATTTG
1 AAGACCAAATTGAATAAATAAATAAAAACACATTTG
10478423 AAGACCAAATTGAATAAATCAAATAA
1 AAGACCAAATTGAATAAAT-AAATAA
10478449 CAGATCCAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 8
0.84 0.03 0.13
Matches are distributed among these distances:
33 28 0.53
34 3 0.06
35 1 0.02
36 1 0.02
37 20 0.38
ACGTcount: A:0.57, C:0.11, G:0.09, T:0.22
Consensus pattern (36 bp):
AAGACCAAATTGAATAAATAAATAAAAACACATTTG
Found at i:10478467 original size:34 final size:34
Alignment explanation
Indices: 10478325--10478469 Score: 123
Period size: 34 Copynumber: 4.2 Consensus size: 34
10478315 TCTAAGGACT
* *
10478325 AAATTGAATAACTCAGAAT-ACACACCCAAAGACC
1 AAATTGAATAAATCA-AATAACACATCCAAAGACC
* ***
10478359 AAATTGAATAAATAAATAAATAACACATTTGAAGACC
1 AAATTGAATAAAT---CAAATAACACATCCAAAGACC
* * ***
10478396 AAGTTGAATAAAT-AAAAAACACATTTGAAGACC
1 AAATTGAATAAATCAAATAACACATCCAAAGACC
* *
10478429 AAATTGAATAAATCAAATAACAGATCCAAAGACT
1 AAATTGAATAAATCAAATAACACATCCAAAGACC
10478463 AAATTGA
1 AAATTGA
10478470 TTAACTTCAG
Statistics
Matches: 91, Mismatches: 15, Indels: 10
0.78 0.13 0.09
Matches are distributed among these distances:
33 31 0.34
34 33 0.36
36 3 0.03
37 24 0.26
ACGTcount: A:0.54, C:0.15, G:0.10, T:0.21
Consensus pattern (34 bp):
AAATTGAATAAATCAAATAACACATCCAAAGACC
Found at i:10478722 original size:72 final size:72
Alignment explanation
Indices: 10478600--10478861 Score: 287
Period size: 72 Copynumber: 3.6 Consensus size: 72
10478590 TTCACACATT
* * * *
10478600 GTTTATCCTCGTTAATGAAATCATGACTGGCGGTGGCTATGTCTATCAAAGAGGTCCTCACCTGG
1 GTTTCTCCTCGTTAATGAAACCACGACTGGCGATGGCTATGTCTATCAAAGAGGTCCTCACCTGG
10478665 CTGAAAG
66 CTGAAAG
* * * *
10478672 GTTTCTCCTCGTTAATGGAACCACGACTGGTGATGGCTATGTCTATCAAAGAGGCCCTCACTTGG
1 GTTTCTCCTCGTTAATGAAACCACGACTGGCGATGGCTATGTCTATCAAAGAGGTCCTCACCTGG
10478737 CTGAAAG
66 CTGAAAG
* * * ** * * * *
10478744 GTTTCTCCCCGTTAACGAAACCATGGTTGGCG-TAGGCTATGTCTATTAGAGAGGTCCGCACCTA
1 GTTTCTCCTCGTTAATGAAACCACGACTGGCGAT-GGCTATGTCTATCAAAGAGGTCCTCACCTG
10478808 GCTGAAAG
65 GCTGAAAG
* * * *
10478816 ATTTCTTCCT-GTTAATGGAATCACGGCTGGCAGA-GGCTATGTCTAT
1 GTTTC-TCCTCGTTAATGAAACCACGACTGGC-GATGGCTATGTCTAT
10478862 TAGAGAGGCC
Statistics
Matches: 158, Mismatches: 28, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
71 1 0.01
72 153 0.97
73 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (72 bp):
GTTTCTCCTCGTTAATGAAACCACGACTGGCGATGGCTATGTCTATCAAAGAGGTCCTCACCTGG
CTGAAAG
Found at i:10479629 original size:22 final size:21
Alignment explanation
Indices: 10479604--10479646 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
10479594 ATTAACTCAA
10479604 TTAACTGCACTAATTACATAAC
1 TTAACTGCACTAATTA-ATAAC
* *
10479626 TTAACTGTATTAATTAATAAC
1 TTAACTGCACTAATTAATAAC
10479647 ACACCCAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.42, C:0.16, G:0.05, T:0.37
Consensus pattern (21 bp):
TTAACTGCACTAATTAATAAC
Found at i:10495872 original size:4 final size:4
Alignment explanation
Indices: 10495863--10495898 Score: 54
Period size: 4 Copynumber: 9.0 Consensus size: 4
10495853 AAATGATAGG
* *
10495863 TAAA TAAA TAAA TGAA TCAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
10495899 AGATAAAATA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:10496014 original size:3 final size:3
Alignment explanation
Indices: 10496006--10496035 Score: 53
Period size: 3 Copynumber: 10.3 Consensus size: 3
10495996 AATTACTATC
10496006 ATA ATA ATA AT- ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
10496036 GGGTAAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 2 0.08
3 24 0.92
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:10497887 original size:50 final size:50
Alignment explanation
Indices: 10497822--10497919 Score: 151
Period size: 50 Copynumber: 2.0 Consensus size: 50
10497812 AGCTTCACTA
* *
10497822 CAACTTCAGAAAGATAAGATTCATCATCATAGTTTCATTCCAACCCACAG
1 CAACTTCAGAAAGATAAGATTCACCATCATAGTTGCATTCCAACCCACAG
** *
10497872 CAACTTCAGGGAGATAAGATTCACCATCGTAGTTGCATTCCAACCCAC
1 CAACTTCAGAAAGATAAGATTCACCATCATAGTTGCATTCCAACCCAC
10497920 TGAAATTTCA
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
50 43 1.00
ACGTcount: A:0.35, C:0.28, G:0.13, T:0.24
Consensus pattern (50 bp):
CAACTTCAGAAAGATAAGATTCACCATCATAGTTGCATTCCAACCCACAG
Found at i:10497930 original size:50 final size:50
Alignment explanation
Indices: 10497823--10497932 Score: 148
Period size: 50 Copynumber: 2.2 Consensus size: 50
10497813 GCTTCACTAC
** * * *
10497823 AACTTCAGAAAGATAAGATTCATCATCATAGTTTCATTCCAACCCACAGC
1 AACTTCAGGGAGATAAGATTCACCATCATAGTTGCATTCCAACCCACAGA
* *
10497873 AACTTCAGGGAGATAAGATTCACCATCGTAGTTGCATTCCAACCCACTGA
1 AACTTCAGGGAGATAAGATTCACCATCATAGTTGCATTCCAACCCACAGA
*
10497923 AATTTCAGGG
1 AACTTCAGGG
10497933 GTATAGGATT
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.35, C:0.25, G:0.15, T:0.25
Consensus pattern (50 bp):
AACTTCAGGGAGATAAGATTCACCATCATAGTTGCATTCCAACCCACAGA
Found at i:10498088 original size:94 final size:94
Alignment explanation
Indices: 10497912--10498132 Score: 227
Period size: 94 Copynumber: 2.4 Consensus size: 94
10497902 AGTTGCATTC
* * *
10497912 CAACCCACTGAAATTTCAGGGGTATAGGATTTATAGCTTCAAACTGCTCCACCATAACTTTAGGG
1 CAACCCACTGAAATTTCAGGGGTATAGGATTTATAGCTTCAAACTGCTCCACCACAACTTCAAGG
10497977 AGATAAGAATTATTATGGTAGA-TTCAATG
66 AGATAAGAATTATTATGGT-GACTTCAATG
* * * * * * **
10498006 CAACCTACTGCAATTTTAGGGGTATAGGATTTGTAGCTTCAACCTGCTCTACTGCAACTTCAAGG
1 CAACCCACTGAAATTTCAGGGGTATAGGATTTATAGCTTCAAACTGCTCCACCACAACTTCAAGG
**
10498071 AGATAA-AATT-TGCTATGGTGACTTCAACC
66 AGATAAGAATTAT--TATGGTGACTTCAATG
* * *
10498100 CAATCCACTGTAACTTT-A-GGGTATATGATTTAT
1 CAACCCACTG-AAATTTCAGGGGTATAGGATTTAT
10498133 GATTTCACTG
Statistics
Matches: 104, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
92 1 0.01
93 19 0.18
94 80 0.77
95 4 0.04
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.32
Consensus pattern (94 bp):
CAACCCACTGAAATTTCAGGGGTATAGGATTTATAGCTTCAAACTGCTCCACCACAACTTCAAGG
AGATAAGAATTATTATGGTGACTTCAATG
Found at i:10509468 original size:20 final size:20
Alignment explanation
Indices: 10509427--10509470 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
10509417 AAATGATAGG
* *
10509427 TAAATAAATAAATGAACCAA
1 TAAATAAATAAAAGAACAAA
10509447 TAAATAAATAAAAGATA-AAA
1 TAAATAAATAAAAGA-ACAAA
10509467 TAAA
1 TAAA
10509471 AATGCTATGC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 20 0.95
21 1 0.05
ACGTcount: A:0.70, C:0.05, G:0.05, T:0.20
Consensus pattern (20 bp):
TAAATAAATAAAAGAACAAA
Found at i:10511887 original size:42 final size:42
Alignment explanation
Indices: 10511828--10511996 Score: 203
Period size: 42 Copynumber: 4.0 Consensus size: 42
10511818 GTTTCCATTC
* *
10511828 AACCCTAATGGGTTTCCGTTCAGCTCTTTTGAGCTTCAGTTT
1 AACCCTTATGGGTTTCCGTTCAGCTCTTATGAGCTTCAGTTT
* *
10511870 AACCCTTATGGGGTTCCGTTCAGCTCTTTTGAGCTTCAGTTT
1 AACCCTTATGGGTTTCCGTTCAGCTCTTATGAGCTTCAGTTT
* * * ** ** *
10511912 AACCCTTTTGGGTTTCTGTTTAGCTCTTACAAGCTTTTGTTC
1 AACCCTTATGGGTTTCCGTTCAGCTCTTATGAGCTTCAGTTT
* * *
10511954 AACCCTTATGGGTTTCCGTTTAGCTCTCATGAGCTTCTGTTT
1 AACCCTTATGGGTTTCCGTTCAGCTCTTATGAGCTTCAGTTT
10511996 A
1 A
10511997 GCCTTCGGGC
Statistics
Matches: 108, Mismatches: 19, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
42 108 1.00
ACGTcount: A:0.15, C:0.23, G:0.19, T:0.43
Consensus pattern (42 bp):
AACCCTTATGGGTTTCCGTTCAGCTCTTATGAGCTTCAGTTT
Found at i:10511921 original size:21 final size:21
Alignment explanation
Indices: 10511853--10511921 Score: 75
Period size: 21 Copynumber: 3.3 Consensus size: 21
10511843 CCGTTCAGCT
10511853 CTTTTGAGCTTCAGTTTAACC
1 CTTTTGAGCTTCAGTTTAACC
* * * * * * *
10511874 CTTATGGGGTTCCGTTCAGCT
1 CTTTTGAGCTTCAGTTTAACC
10511895 CTTTTGAGCTTCAGTTTAACC
1 CTTTTGAGCTTCAGTTTAACC
10511916 CTTTTG
1 CTTTTG
10511922 GGTTTCTGTT
Statistics
Matches: 34, Mismatches: 14, Indels: 0
0.71 0.29 0.00
Matches are distributed among these distances:
21 34 1.00
ACGTcount: A:0.14, C:0.23, G:0.19, T:0.43
Consensus pattern (21 bp):
CTTTTGAGCTTCAGTTTAACC
Found at i:10511932 original size:21 final size:21
Alignment explanation
Indices: 10511853--10511933 Score: 72
Period size: 21 Copynumber: 3.9 Consensus size: 21
10511843 CCGTTCAGCT
*
10511853 CTTTTGAGCTTCAGTTTAACC
1 CTTTTGGGCTTCAGTTTAACC
* * * * * *
10511874 CTTATGGGGTTCCGTTCAGCT
1 CTTTTGGGCTTCAGTTTAACC
*
10511895 CTTTTGAGCTTCAGTTTAACC
1 CTTTTGGGCTTCAGTTTAACC
* *
10511916 CTTTTGGGTTTCTGTTTA
1 CTTTTGGGCTTCAGTTTA
10511934 GCTCTTACAA
Statistics
Matches: 43, Mismatches: 17, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 43 1.00
ACGTcount: A:0.14, C:0.21, G:0.20, T:0.46
Consensus pattern (21 bp):
CTTTTGGGCTTCAGTTTAACC
Found at i:10521172 original size:158 final size:154
Alignment explanation
Indices: 10520743--10521197 Score: 453
Period size: 158 Copynumber: 2.9 Consensus size: 154
10520733 GCAAGTTGAA
* * *
10520743 AAAAAAGTTAGCAAAAAACTCTTACTTCGGCCCTTTCTTCGTATTTTTTTCTCCGTATTTTATTA
1 AAAAAATTTAGTAAAAAACTCTTACTTCGGCCCTTTC-TCGTATTTTTTTCTCCGAATTTTATTA
* *
10520808 CTTTAAAAAATATCATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTG-AA
65 TTTTAAAAAATATTATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAA
* *
10520872 -ATTTATTAATTTAGTGTGTTTTTT
130 TATTTATTAATTTAGTCTGATTTTT
* ** * * **
10520896 AAATTAATTTAGTGTAAAAAAAACATTA-TTCCTGCCCTTTACTCGTATTATTTTC-CTAAATTT
1 AAA-AAATTTA--GTAAAAAACTC-TTACTT-CGGCCCTTT-CTCGTATTTTTTTCTCCGAATTT
* * * *
10520959 TATTACTTTCAATAAAAATATATTAT--TTTCGT-ATTTTATTATTTTATATTGTTTCAGTACAT
60 TATTA-TTT---TAAAAA-ATATTATAATTTC-TAATTTTATAATTTTACATTATTTCAGTGCAT
* *
10521021 TTTGTTTGAAATATTTGTATTAA-TTATTTCTGAATTTTT
119 TATGTTTGAAATA-TT-TATTAATTTA-GTCTG-ATTTTT
* * * * *
10521060 AAAAAATTTAGTAAAACACTCTTACTTCGGTCATTTGTACGTATTTTTTTCTCCGCATTTTATTA
1 AAAAAATTTAGTAAAAAACTCTTACTTCGGCCCTTTCT-CGTATTTTTTTCTCCGAATTTTATTA
10521125 TTTTAAAAAATATTATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTG-AA
65 TTTTAAAAAATATTATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAA
10521189 -ATTTATTAA
130 TATTTATTAA
10521198 ATATACCATT
Statistics
Matches: 241, Mismatches: 37, Indels: 47
0.74 0.11 0.14
Matches are distributed among these distances:
153 3 0.01
154 11 0.05
155 2 0.01
156 28 0.12
157 34 0.14
158 38 0.16
159 38 0.16
160 32 0.13
161 27 0.11
162 5 0.02
163 15 0.06
164 8 0.03
ACGTcount: A:0.32, C:0.11, G:0.07, T:0.50
Consensus pattern (154 bp):
AAAAAATTTAGTAAAAAACTCTTACTTCGGCCCTTTCTCGTATTTTTTTCTCCGAATTTTATTAT
TTTAAAAAATATTATAATTTCTAATTTTATAATTTTACATTATTTCAGTGCATTATGTTTGAAAT
ATTTATTAATTTAGTCTGATTTTT
Found at i:10521537 original size:4 final size:4
Alignment explanation
Indices: 10521528--10521705 Score: 54
Period size: 4 Copynumber: 43.5 Consensus size: 4
10521518 AAAAATTACT
* * *
10521528 TTTC TTTC TTTC TTT- TTCC TTCC TTCCC TATTC TTGTTC TTTC TTT-
1 TTTC TTTC TTTC TTTC TTTC TTTC TT-TC T-TTC -T-TTC TTTC TTTC
* * * * *
10521574 TTT- TTTC TCTTC -TCC ATTCC TTTTC TTTC CTTC -TT- TTTC TTTT TTTT
1 TTTC TTTC T-TTC TTTC -TTTC TT-TC TTTC TTTC TTTC TTTC TTTC TTTC
*
10521621 TTTC -TTC TTCTCC TTTCC TTTTC TTTC CTTC -TT- TTTC TTTC TTTCC
1 TTTC TTTC TT-T-C TTT-C -TTTC TTTC TTTC TTTC TTTC TTTC TTT-C
*
10521667 TCTCC TTTCC TTTTC TTTC -TT- TTTC TTTC TTTC TTTC TT
1 T-TTC TTT-C -TTTC TTTC TTTC TTTC TTTC TTTC TTTC TT
10521706 CTTCTTTTCC
Statistics
Matches: 140, Mismatches: 11, Indels: 46
0.71 0.06 0.23
Matches are distributed among these distances:
3 25 0.18
4 75 0.54
5 25 0.18
6 15 0.11
ACGTcount: A:0.01, C:0.29, G:0.01, T:0.70
Consensus pattern (4 bp):
TTTC
Found at i:10521600 original size:32 final size:35
Alignment explanation
Indices: 10521526--10521613 Score: 105
Period size: 32 Copynumber: 2.6 Consensus size: 35
10521516 TAAAAAATTA
10521526 CTTTTCTTTCTTTCTTTTTC-CTTCCTTCCCTATT
1 CTTTTCTTTCTTTCTTTTTCTCTTCCTTCCCTATT
*
10521560 CTTGTTCTTTCTTTTTTTTTCTCTT-C-T-CC-ATT
1 CTT-TTCTTTCTTTCTTTTTCTCTTCCTTCCCTATT
*
10521592 CCTTTTCTTTCCTTCTTTTTCT
1 -CTTTTCTTTCTTTCTTTTTCT
10521614 TTTTTTTTTT
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
32 19 0.40
33 5 0.10
34 4 0.08
35 17 0.35
36 3 0.06
ACGTcount: A:0.02, C:0.30, G:0.01, T:0.67
Consensus pattern (35 bp):
CTTTTCTTTCTTTCTTTTTCTCTTCCTTCCCTATT
Found at i:10521605 original size:10 final size:10
Alignment explanation
Indices: 10521532--10521712 Score: 84
Period size: 10 Copynumber: 18.7 Consensus size: 10
10521522 ATTACTTTTC
*
10521532 TTTCTTTCTT
1 TTTCTTTCCT
*
10521542 TTTCCTTCCT
1 TTTCTTTCCT
**
10521552 TCCCTATT-CT
1 TTTCT-TTCCT
*
10521562 TGTTCTTTCTT
1 T-TTCTTTCCT
*
10521573 TTTTTTTCTCT
1 TTTCTTTC-CT
* *
10521584 TCTCCATTCCT
1 T-TTCTTTCCT
10521595 TTTCTTTCCT
1 TTTCTTTCCT
10521605 TCTT-TTT-CT
1 T-TTCTTTCCT
10521614 TTT-TTT--T
1 TTTCTTTCCT
10521621 TTTC-TT-CT
1 TTTCTTTCCT
*
10521629 TCTCCTTTCCT
1 T-TTCTTTCCT
10521640 TTTCTTTCCT
1 TTTCTTTCCT
10521650 TCTT-TTT-C-
1 T-TTCTTTCCT
10521658 TTTCTTTCCT
1 TTTCTTTCCT
* *
10521668 CTCCTTTCCT
1 TTTCTTTCCT
*
10521678 TTTCTTTCTT
1 TTTCTTTCCT
10521688 TTTCTTT-C-
1 TTTCTTTCCT
10521696 TTTCTTT-CT
1 TTTCTTTCCT
10521705 TCTTCTTT
1 T-TTCTTT
10521713 TCCTCTCCTT
Statistics
Matches: 131, Mismatches: 23, Indels: 34
0.70 0.12 0.18
Matches are distributed among these distances:
7 8 0.06
8 19 0.15
9 8 0.06
10 74 0.56
11 18 0.14
12 4 0.03
ACGTcount: A:0.01, C:0.29, G:0.01, T:0.70
Consensus pattern (10 bp):
TTTCTTTCCT
Found at i:10521613 original size:14 final size:14
Alignment explanation
Indices: 10521594--10521724 Score: 79
Period size: 14 Copynumber: 9.0 Consensus size: 14
10521584 TCTCCATTCC
10521594 TTTTCTTTCCTTCT
1 TTTTCTTTCCTTCT
** *
10521608 TTTTCTTTTTTTTT
1 TTTTCTTTCCTTCT
*
10521622 TTCTTCTTCTCCTTTCC
1 TT-TTCTT-TCC-TTCT
10521639 TTTTCTTTCCTTCT
1 TTTTCTTTCCTTCT
* *
10521653 TTTTCTTTCTTTCC
1 TTTTCTTTCCTTCT
* *
10521667 TCTCCTTTCCTT-T
1 TTTTCTTTCCTTCT
10521680 TCTTTCTTT--TTCTT
1 T-TTTCTTTCCTTC-T
10521694 TCTTTCTTTCTTCTTCT
1 T-TTTCTTTC--CTTCT
* *
10521711 TTTCCTCTCCTTCT
1 TTTTCTTTCCTTCT
10521725 CTTCTCCCCA
Statistics
Matches: 89, Mismatches: 18, Indels: 20
0.70 0.14 0.16
Matches are distributed among these distances:
12 2 0.02
13 1 0.01
14 57 0.64
15 8 0.09
16 12 0.13
17 6 0.07
18 3 0.03
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTTCTTTCCTTCT
Found at i:10521617 original size:38 final size:38
Alignment explanation
Indices: 10521532--10521712 Score: 145
Period size: 38 Copynumber: 4.6 Consensus size: 38
10521522 ATTACTTTTC
* * *
10521532 TTTCTTTCTTT-TTCCTTCCTTCCCTATTCTTGTTCTTTCTT
1 TTTCTTTCTTTCTT-C-TCCTTTCCTTTTC-T-TTCCTTCTT
* *
10521573 TTT-TTT-TCTCTTCTCCATTCCTTTTCTTTCCTTCTT
1 TTTCTTTCTTTCTTCTCCTTTCCTTTTCTTTCCTTCTT
*
10521609 TTTCTTTTTTTTTTTCTTCTTCTCCTTTCCTTTTCTTTCCTTCTT
1 TTTC------TTTCT-TTCTTCTCCTTTCCTTTTCTTTCCTTCTT
* *
10521654 TTTCTTTCTTTCCTCTCCTTTCCTTTTCTTT-CTTTTT
1 TTTCTTTCTTTCTTCTCCTTTCCTTTTCTTTCCTTCTT
*
10521691 CTTTCTTTCTTTCTTCTTCTTT
1 -TTTCTTTCTTTCTTCTCCTTT
10521713 TCCTCTCCTT
Statistics
Matches: 117, Mismatches: 12, Indels: 25
0.76 0.08 0.16
Matches are distributed among these distances:
36 11 0.09
37 6 0.05
38 50 0.43
39 7 0.06
40 5 0.04
41 3 0.03
43 3 0.03
44 1 0.01
45 31 0.26
ACGTcount: A:0.01, C:0.29, G:0.01, T:0.70
Consensus pattern (38 bp):
TTTCTTTCTTTCTTCTCCTTTCCTTTTCTTTCCTTCTT
Found at i:10521621 original size:24 final size:24
Alignment explanation
Indices: 10521594--10521713 Score: 95
Period size: 24 Copynumber: 5.1 Consensus size: 24
10521584 TCTCCATTCC
10521594 TTTTCTTTCCTTCTTTTTC-TTTT
1 TTTTCTTTCCTTCTTTTTCTTTTT
* * **
10521617 TTTT-TTT-CTTCTTCTCCTTTCC
1 TTTTCTTTCCTTCTTTTTCTTTTT
*
10521639 TTTTCTTTCCTTCTTTTTC-TTTC
1 TTTTCTTTCCTTCTTTTTCTTTTT
* * * *
10521662 TTTCCTCTCCTTTCCTTTTCTTTCT
1 TTTTCTTTCC-TTCTTTTTCTTTTT
* *
10521687 TTTTCTTTCTTTCTTTCTTCTTCTT
1 TTTTCTTTCCTTCTTT-TTCTTTTT
10521712 TT
1 TT
10521714 CCTCTCCTTC
Statistics
Matches: 73, Mismatches: 18, Indels: 10
0.72 0.18 0.10
Matches are distributed among these distances:
21 8 0.11
22 9 0.12
23 18 0.25
24 21 0.29
25 17 0.23
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (24 bp):
TTTTCTTTCCTTCTTTTTCTTTTT
Found at i:10521622 original size:45 final size:47
Alignment explanation
Indices: 10521558--10521664 Score: 175
Period size: 45 Copynumber: 2.3 Consensus size: 47
10521548 TCCTTCCCTA
*
10521558 TTCTTGTTCTTTCTTTTTTTTTC-TCTTCTCCATTCCTTTTCTTTCC
1 TTCTTTTTCTTTCTTTTTTTTTCTTCTTCTCCATTCCTTTTCTTTCC
*
10521604 TTCTTTTTC-TT-TTTTTTTTTCTTCTTCTCCTTTCCTTTTCTTTCC
1 TTCTTTTTCTTTCTTTTTTTTTCTTCTTCTCCATTCCTTTTCTTTCC
10521649 TTCTTTTTCTTTCTTT
1 TTCTTTTTCTTTCTTT
10521665 CCTCTCCTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
44 10 0.18
45 33 0.59
46 10 0.18
47 3 0.05
ACGTcount: A:0.01, C:0.26, G:0.01, T:0.72
Consensus pattern (47 bp):
TTCTTTTTCTTTCTTTTTTTTTCTTCTTCTCCATTCCTTTTCTTTCC
Found at i:10521674 original size:28 final size:28
Alignment explanation
Indices: 10521567--10521688 Score: 85
Period size: 28 Copynumber: 4.4 Consensus size: 28
10521557 ATTCTTGTTC
*
10521567 TTTCTTT-TTT-TTTCTCTTCTCCATTCCT
1 TTTCTTTCTTTCTTTC-C-TCTCCTTTCCT
* * * **
10521595 TTTCTTTCCTTCTTT-TTCT-TTTTTTT
1 TTTCTTTCTTTCTTTCCTCTCCTTTCCT
* *
10521621 TTTC-TTCTTCTCCTTTCCTTTTCTTTCCT
1 TTTCTTTCTT-T-CTTTCCTCTCCTTTCCT
10521650 TCTT-TTTCTTTCTTTCCTCTCCTTTCCT
1 T-TTCTTTCTTTCTTTCCTCTCCTTTCCT
10521678 TTTCTTTCTTT
1 TTTCTTTCTTT
10521689 TTCTTTCTTT
Statistics
Matches: 71, Mismatches: 14, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
25 4 0.06
26 8 0.11
27 9 0.13
28 32 0.45
29 8 0.11
30 10 0.14
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.70
Consensus pattern (28 bp):
TTTCTTTCTTTCTTTCCTCTCCTTTCCT
Found at i:10532708 original size:2 final size:2
Alignment explanation
Indices: 10532695--10532741 Score: 85
Period size: 2 Copynumber: 23.5 Consensus size: 2
10532685 TGGAAGAACA
*
10532695 AG AG AA AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
10532737 AG AG A
1 AG AG A
10532742 TTCTCTGCTC
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
2 43 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10537519 original size:31 final size:31
Alignment explanation
Indices: 10537475--10537537 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
10537465 TTTTTTAAAA
** *
10537475 AAAATTATTGTAATATCA-ATTATAATATTTT
1 AAAATTAAAGTAATATAATATTATAA-ATTTT
10537506 AAAATTAAAGTAATATAATATTATAAATTTT
1 AAAATTAAAGTAATATAATATTATAAATTTT
10537537 A
1 A
10537538 TGTAAAAAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 21 0.75
32 7 0.25
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (31 bp):
AAAATTAAAGTAATATAATATTATAAATTTT
Found at i:10545822 original size:9 final size:9
Alignment explanation
Indices: 10545785--10545898 Score: 51
Period size: 9 Copynumber: 12.7 Consensus size: 9
10545775 TGTTAAATAT
10545785 TTAAAA-TA
1 TTAAAATTA
*
10545793 TTAGAATTGA
1 TTAAAATT-A
*
10545803 TATAAACTTA
1 T-TAAAATTA
10545813 TTAAAATTA
1 TTAAAATTA
10545822 -TAAATATT-
1 TTAAA-ATTA
10545830 TATAAATATTA
1 T-TAAA-ATTA
10545841 -TAAAA-TA
1 TTAAAATTA
* *
10545848 TAAAAATTG
1 TTAAAATTA
*
10545857 TAATAAATTA
1 TTA-AAATTA
* *
10545867 TCAAATTTA
1 TTAAAATTA
*
10545876 TCAAAATTA
1 TTAAAATTA
10545885 -TAAAATTA
1 TTAAAATTA
*
10545893 ATAAAA
1 TTAAAA
10545899 CTGATTTTAT
Statistics
Matches: 84, Mismatches: 11, Indels: 21
0.72 0.09 0.18
Matches are distributed among these distances:
7 2 0.02
8 21 0.25
9 37 0.44
10 19 0.23
11 5 0.06
ACGTcount: A:0.56, C:0.03, G:0.03, T:0.39
Consensus pattern (9 bp):
TTAAAATTA
Found at i:10545834 original size:10 final size:9
Alignment explanation
Indices: 10545814--10545897 Score: 54
Period size: 9 Copynumber: 9.4 Consensus size: 9
10545804 ATAAACTTAT
10545814 TAAA-ATTA
1 TAAATATTA
10545822 TAAATATTTA
1 TAAATA-TTA
10545832 TAAATATTA
1 TAAATATTA
10545841 TAAA-A-TA
1 TAAATATTA
* *
10545848 TAAAAATTG
1 TAAATATTA
*
10545857 TAATAAATTA
1 TAA-ATATTA
10545867 TCAAAT-TTA
1 T-AAATATTA
10545876 TCAAA-ATTA
1 T-AAATATTA
10545885 TAAA-ATTAA
1 TAAATATT-A
10545894 TAAA
1 TAAA
10545898 ACTGATTTTA
Statistics
Matches: 65, Mismatches: 3, Indels: 15
0.78 0.04 0.18
Matches are distributed among these distances:
7 6 0.09
8 12 0.18
9 29 0.45
10 16 0.25
11 2 0.03
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.38
Consensus pattern (9 bp):
TAAATATTA
Found at i:10546416 original size:9 final size:9
Alignment explanation
Indices: 10546404--10546638 Score: 105
Period size: 9 Copynumber: 24.6 Consensus size: 9
10546394 GTTTTATGGT
10546404 TTTTTATAA
1 TTTTTATAA
*
10546413 TTTTTACAA
1 TTTTTATAA
*
10546422 TTTATATCAA
1 TTTTTAT-AA
*
10546432 -TTTTAAAA
1 TTTTTATAA
* *
10546440 CTTTTAATAT
1 -TTTTTATAA
*
10546450 TTTTTATAT
1 TTTTTATAA
10546459 TTTTTATAA
1 TTTTTATAA
* *
10546468 TATTTATTA
1 TTTTTATAA
10546477 TTTTTATAGAA
1 TTTTTAT--AA
* *
10546488 TTTTAATAGG
1 TTTTTATA-A
10546498 TTTTTATAA
1 TTTTTATAA
*** *
10546507 AAATTAAAA
1 TTTTTATAA
* *
10546516 TATTTAAAATA
1 T-TTTTATA-A
*
10546527 TATTTTATTA
1 T-TTTTATAA
*
10546537 CTTTTATAA
1 TTTTTATAA
*
10546546 TTTTTTTATAT
1 --TTTTTATAA
*
10546557 TTTTTATCA
1 TTTTTATAA
10546566 TTTTTATAA
1 TTTTTATAA
10546575 TTTTTTTATAA
1 --TTTTTATAA
10546586 TTTTTATAA
1 TTTTTATAA
* *
10546595 GTTTATATCCA
1 -TTTTTAT-AA
*
10546606 TTTTCATAA
1 TTTTTATAA
10546615 TTTTTAT-A
1 TTTTTATAA
10546623 TTTTTGATAAA
1 TTTTT-AT-AA
10546634 TTTTT
1 TTTTT
10546639 TTCTGATTTT
Statistics
Matches: 167, Mismatches: 42, Indels: 32
0.69 0.17 0.13
Matches are distributed among these distances:
8 8 0.05
9 92 0.55
10 30 0.18
11 37 0.22
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (9 bp):
TTTTTATAA
Found at i:10546554 original size:11 final size:11
Alignment explanation
Indices: 10546538--10546590 Score: 69
Period size: 11 Copynumber: 5.2 Consensus size: 11
10546528 ATTTTATTAC
10546538 TTTTATAATTT
1 TTTTATAATTT
10546549 TTTTAT-A-TT
1 TTTTATAATTT
*
10546558 TTTTATCA--T
1 TTTTATAATTT
10546567 TTTTATAATTT
1 TTTTATAATTT
10546578 TTTTATAATTT
1 TTTTATAATTT
10546589 TT
1 TT
10546591 ATAAGTTTAT
Statistics
Matches: 38, Mismatches: 1, Indels: 6
0.84 0.02 0.13
Matches are distributed among these distances:
9 16 0.42
10 2 0.05
11 20 0.53
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.74
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:10546554 original size:20 final size:20
Alignment explanation
Indices: 10546529--10546590 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
10546519 TTAAAATATA
*
10546529 TTTTATTACTTTTATAATTT
1 TTTTATTATTTTTATAATTT
*
10546549 TTTTA-TATTTTTTATCATTT
1 TTTTATTA-TTTTTATAATTT
*
10546569 TTATAATT-TTTTTATAATTT
1 TT-TTATTATTTTTATAATTT
10546589 TT
1 TT
10546591 ATAAGTTTAT
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
19 2 0.06
20 30 0.86
21 2 0.06
22 1 0.03
ACGTcount: A:0.24, C:0.03, G:0.00, T:0.73
Consensus pattern (20 bp):
TTTTATTATTTTTATAATTT
Found at i:10546561 original size:29 final size:29
Alignment explanation
Indices: 10546524--10546592 Score: 102
Period size: 29 Copynumber: 2.4 Consensus size: 29
10546514 AATATTTAAA
* *
10546524 ATATATTTTATTACTTTTATAATTTTTTT
1 ATATTTTTTATCACTTTTATAATTTTTTT
*
10546553 ATATTTTTTATCATTTTTATAATTTTTTT
1 ATATTTTTTATCACTTTTATAATTTTTTT
*
10546582 ATAATTTTTAT
1 ATATTTTTTAT
10546593 AAGTTTATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.28, C:0.03, G:0.00, T:0.70
Consensus pattern (29 bp):
ATATTTTTTATCACTTTTATAATTTTTTT
Found at i:10546591 original size:20 final size:20
Alignment explanation
Indices: 10546538--10546650 Score: 83
Period size: 20 Copynumber: 5.7 Consensus size: 20
10546528 ATTTTATTAC
*
10546538 TTTTATAATTTTT-TTATATT
1 TTTTATAATTTTTATAAT-TT
*
10546558 TTTTATCATTTTTATAATTT
1 TTTTATAATTTTTATAATTT
*
10546578 TTTTATAATTTTTATAA-GT
1 TTTTATAATTTTTATAATTT
* * *
10546597 TTATATCCATTTTCATAA--T
1 TTTTAT-AATTTTTATAATTT
10546616 TTTTAT-ATTTTTGATAAATTT
1 TTTTATAATTTTT-AT-AATTT
* *
10546637 TTTTCTGATTTTTA
1 TTTTATAATTTTTA
10546651 ATCATTTTTA
Statistics
Matches: 76, Mismatches: 10, Indels: 13
0.77 0.10 0.13
Matches are distributed among these distances:
17 5 0.07
18 2 0.03
19 14 0.18
20 39 0.51
21 10 0.13
22 6 0.08
ACGTcount: A:0.27, C:0.04, G:0.03, T:0.66
Consensus pattern (20 bp):
TTTTATAATTTTTATAATTT
Found at i:10547429 original size:9 final size:9
Alignment explanation
Indices: 10547412--10547448 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
10547402 TGAGTTTTCA
10547412 AATTCGAAT
1 AATTCGAAT
*
10547421 AACTCGAAT
1 AATTCGAAT
10547430 AATTCGAAT
1 AATTCGAAT
10547439 AATTCGAAT
1 AATTCGAAT
10547448 A
1 A
10547449 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:10547988 original size:9 final size:9
Alignment explanation
Indices: 10547974--10548002 Score: 58
Period size: 9 Copynumber: 3.2 Consensus size: 9
10547964 AATTTTACAT
10547974 TTTATATTA
1 TTTATATTA
10547983 TTTATATTA
1 TTTATATTA
10547992 TTTATATTA
1 TTTATATTA
10548001 TT
1 TT
10548003 GAATTGTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (9 bp):
TTTATATTA
Found at i:10548647 original size:20 final size:20
Alignment explanation
Indices: 10548622--10548661 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
10548612 CATGACGGAA
10548622 GCAGC-AACAGAAACAGAAAC
1 GCAGCAAACAGAAACA-AAAC
*
10548642 GCAGCAAACAGTAACAAAAC
1 GCAGCAAACAGAAACAAAAC
10548662 AACAATAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.55, C:0.25, G:0.17, T:0.03
Consensus pattern (20 bp):
GCAGCAAACAGAAACAAAAC
Found at i:10549224 original size:17 final size:16
Alignment explanation
Indices: 10549193--10549231 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
10549183 AGCTTTAACA
*
10549193 TTCTATTTTTTTTTTG
1 TTCTATTTTTTTTTTC
*
10549209 TTCTTTTTTTTCTTTTC
1 TTCTATTTTTT-TTTTC
10549226 TTCTAT
1 TTCTAT
10549232 GAAATTAGGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
16 10 0.53
17 9 0.47
ACGTcount: A:0.05, C:0.13, G:0.03, T:0.79
Consensus pattern (16 bp):
TTCTATTTTTTTTTTC
Found at i:10552113 original size:19 final size:20
Alignment explanation
Indices: 10552073--10552116 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
10552063 GTCTCTTTAG
* *
10552073 GCATT-CATTTCATGCATCT
1 GCATTACATTGCATGCATAT
10552092 GCATTACATTGCAT-CATAT
1 GCATTACATTGCATGCATAT
10552111 GCATTA
1 GCATTA
10552117 GATTTTCACG
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
19 15 0.68
20 7 0.32
ACGTcount: A:0.27, C:0.23, G:0.11, T:0.39
Consensus pattern (20 bp):
GCATTACATTGCATGCATAT
Found at i:10555586 original size:16 final size:18
Alignment explanation
Indices: 10555552--10555590 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
10555542 TGATTCAAAA
10555552 AAAAAAAAGAAGAAGATG
1 AAAAAAAAGAAGAAGATG
*
10555570 AAAAAAATGAA-AA-ATG
1 AAAAAAAAGAAGAAGATG
10555586 AAAAA
1 AAAAA
10555591 GTAAAAATGG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 8 0.40
17 2 0.10
18 10 0.50
ACGTcount: A:0.77, C:0.00, G:0.15, T:0.08
Consensus pattern (18 bp):
AAAAAAAAGAAGAAGATG
Found at i:10556980 original size:83 final size:82
Alignment explanation
Indices: 10556874--10557151 Score: 269
Period size: 83 Copynumber: 3.3 Consensus size: 82
10556864 TTAAAGATTC
10556874 GGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGAGATT
1 GGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAA-GATAGTAATCCTATCTCCTTGAGATT
10556939 ACAATGGAGCGGATTAAA
65 ACAATGGAGCGGATTAAA
* ** * * * * *
10556957 GGATCTTATCTCTCTGA-AGTTACAGTAGAGAAGATC-ACATCAG--GTCTTATCTCCCTGAGAT
1 GGATCTTATCTCCCTGAGA-TTACAGCGGAGCAGATCAAGAT-AGTAATCCTATCTCCTTGAGAT
* * * * **
10557018 TATAGTGGAACAGACCAAA
64 TACAATGGAGCGGATTAAA
*
10557037 GAATTTCAGATCTTATCTCCCTGAGATTACATCGGAGCAGATCAAAGATAGTAATCCTATCTCCT
1 G-------GATCTTATCTCCCTGAGATTACAGCGGAGCAGATC-AAGATAGTAATCCTATCTCCT
10557102 TGAGATTACAATGGAGCGGATTAAA
58 TGAGATTACAATGGAGCGGATTAAA
*
10557127 GGATCTTATCTCTCTGA-AGTTACAG
1 GGATCTTATCTCCCTGAGA-TTACAG
10557152 TAGAGAAGAT
Statistics
Matches: 149, Mismatches: 31, Indels: 30
0.71 0.15 0.14
Matches are distributed among these distances:
80 29 0.19
81 2 0.01
82 5 0.03
83 50 0.34
87 28 0.19
88 3 0.02
89 3 0.02
90 29 0.19
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (82 bp):
GGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGATAGTAATCCTATCTCCTTGAGATTA
CAATGGAGCGGATTAAA
Found at i:10557083 original size:46 final size:43
Alignment explanation
Indices: 10556849--10557369 Score: 294
Period size: 44 Copynumber: 12.1 Consensus size: 43
10556839 CCTTCATTGG
* * * *
10556849 TTACAGTGGAGCTGGTTAAAGATTCGGATCTTATCTCCCTGAGA
1 TTACAGTGGAGCAGATCAAAGA-TCAGATCTTATCTCCCTGAGA
* * * *
10556893 TTACAGCGGAGCAGATCAAGGAT-AGTAATCCTATCTCCTTGAGA
1 TTACAGTGGAGCAGATCAAAGATCAG--ATCTTATCTCCCTGAGA
* * * *
10556937 TTACAATGGAGCGGATTAAAG----GATCTTATCTCTCTGA-A
1 TTACAGTGGAGCAGATCAAAGATCAGATCTTATCTCCCTGAGA
* * * *
10556975 GTTACAGTAGAGAAGATC--ACATCAGGTCTTATCTCCCTGAGA
1 -TTACAGTGGAGCAGATCAAAGATCAGATCTTATCTCCCTGAGA
* * *
10557017 TTATAGTGGAACAGACCAAAGAATTTCAGATCTTATCTCCCTGAGA
1 TTACAGTGGAGCAGATCAAAG-A--TCAGATCTTATCTCCCTGAGA
* *
10557063 TTACA-TCGGAGCAGATCAAAGAT-AGTAATCCTATCTCCTTGAGA
1 TTACAGT-GGAGCAGATCAAAGATCAG--ATCTTATCTCCCTGAGA
* * * *
10557107 TTACAATGGAGCGGATTAAAG----GATCTTATCTCTCTGA-A
1 TTACAGTGGAGCAGATCAAAGATCAGATCTTATCTCCCTGAGA
* * * *
10557145 GTTACAGTAGAGAAGATC--ACATCAGGTCTTATCTCCCTGAGA
1 -TTACAGTGGAGCAGATCAAAGATCAGATCTTATCTCCCTGAGA
** * * *
10557187 TTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGG
1 TTACAGTGGAGCAGATCAAAG-A--TCAGATCTTATCTCCCTGAGA
** *
10557233 TTACAGTGGAGCAGATTGAAGCCA-GAGATCTTATCTCCCTGAGA
1 TTACAGTGGAGCAGATCAAAG--ATCAGATCTTATCTCCCTGAGA
* * *
10557277 TTACAGCGGAGCAGATCGAAA-A-CACTATCCTATCTCCCTGA-A
1 TTACAGTGGAGCAGATC-AAAGATCA-GATCTTATCTCCCTGAGA
* * * * *
10557319 GTTACAGTGGAGCGGATTAAA-ATAAAGGATCTTATCTCTCTGAGG
1 -TTACAGTGGAGCAGATCAAAGAT-CA-GATCTTATCTCCCTGAGA
10557364 TTACAG
1 TTACAG
10557370 CAGAGTAGAT
Statistics
Matches: 361, Mismatches: 81, Indels: 70
0.71 0.16 0.14
Matches are distributed among these distances:
37 2 0.01
38 2 0.01
39 48 0.13
41 55 0.15
42 12 0.03
43 32 0.09
44 134 0.37
45 5 0.01
46 70 0.19
47 1 0.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (43 bp):
TTACAGTGGAGCAGATCAAAGATCAGATCTTATCTCCCTGAGA
Found at i:10557157 original size:170 final size:170
Alignment explanation
Indices: 10556875--10557248 Score: 678
Period size: 170 Copynumber: 2.2 Consensus size: 170
10556865 TAAAGATTCG
* *
10556875 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAGGATAGTAATCCTATCTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACATCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
10556940 CAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
66 CAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
*
10557005 ATCTCCCTGAGATTATAGTGGAACAGACCAAAGAATTTCA
131 ATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCA
10557045 GATCTTATCTCCCTGAGATTACATCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
1 GATCTTATCTCCCTGAGATTACATCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
10557110 CAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
66 CAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
* *
10557175 ATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCG
131 ATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCA
*
10557215 GATCTTATCTCCCTGAGGTTACAGT-GGAGCAGAT
1 GATCTTATCTCCCTGAGATTACA-TCGGAGCAGAT
10557249 TGAAGCCAGA
Statistics
Matches: 197, Mismatches: 6, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
170 196 0.99
171 1 0.01
ACGTcount: A:0.32, C:0.20, G:0.21, T:0.28
Consensus pattern (170 bp):
GATCTTATCTCCCTGAGATTACATCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATTA
CAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCTT
ATCTCCCTGAGATTACAGTGGAACAGACCAAAGAATTTCA
Found at i:10557311 original size:87 final size:87
Alignment explanation
Indices: 10557220--10557381 Score: 218
Period size: 87 Copynumber: 1.9 Consensus size: 87
10557210 TTTCGGATCT
* * * *
10557220 TATCTCCCTGAGGTTACAGTGGAGCAGATTGAAGC-CAGAGATCTTATCTCCCTGAGATTACAGC
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAG-GATCTTATCTCCCTGAGATTACAGC
*
10557284 GGAGCAGATCGAAAACACTATCC
65 AGAGCAGATCGAAAACACTATCC
* * * *
10557307 TATCTCCCTGAAGTTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCA
1 TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
*
10557372 GAGTAGATCG
66 GAGCAGATCG
10557382 CATCAGGTCT
Statistics
Matches: 64, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
87 62 0.97
88 2 0.03
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.25
Consensus pattern (87 bp):
TATCTCCCTGAAGTTACAGTGGAGCAGATTAAAACAAAGGATCTTATCTCCCTGAGATTACAGCA
GAGCAGATCGAAAACACTATCC
Found at i:10557485 original size:218 final size:213
Alignment explanation
Indices: 10557044--10557485 Score: 464
Period size: 218 Copynumber: 2.0 Consensus size: 213
10557034 AAAGAATTTC
* * * *
10557044 AGATCTTATCTCCCTGAGATTACATCGGAGCAGATCAAAGATAGTAATCCTATCTCCTTGAGATT
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGATT
*
10557109 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGTAGAGAAGATCACATCAGGTCT
66 ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAGGTCT
* * ** * * *
10557174 TATCTCCCTGAGATTACAGTGGAATAGACCAAAGAATTTCGGATCTTATCTCCCTGAGGTTACAG
131 TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAAATAAGGA-CGTATCTCCCTAAAGTTACAG
* ** *
10557239 TGGAGCAGATTGAAGCCAG
195 CGGAGCAGACAGAAGACAG
10557258 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCGAAA-ACACT-ATCCTATCTCCCTGA-AG
1 AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATC-AAAGACACTAATCCTATCTCCCTGAGA-
* * * *
10557320 TTACAGTGGAGCGGATTAAAATAAAGGATCTTATCTCTCTGAGGTTACAGCAGAGTAGATCGCAT
64 TTACAATGGAGCGGA-T----TAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACAT
* * * * *
10557385 CAGGTCTTATTTCCCTGAAGA-TGCAGTGGAACAGACTGAAA-ACAATAAGG-CGTGTCTCCTTA
124 CAGGTCTTATCTCCCTG-AGATTACAGTGGAACAGAC-CAAAGA-AATAAGGACGTATCTCCCTA
** * *
10557447 AAGTTGTAGCGGAGCGGACAGAAGATAG
186 AAGTTACAGCGGAGCAGACAGAAGACAG
*
10557475 TGATTCTTATC
1 AGA-TCTTATC
10557486 ATGTCTAATC
Statistics
Matches: 187, Mismatches: 30, Indels: 18
0.80 0.13 0.08
Matches are distributed among these distances:
212 1 0.01
213 28 0.15
214 39 0.21
215 3 0.02
217 29 0.16
218 77 0.41
219 10 0.05
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (213 bp):
AGATCTTATCTCCCTGAGATTACAGCGGAGCAGATCAAAGACACTAATCCTATCTCCCTGAGATT
ACAATGGAGCGGATTAAAGGATCTTATCTCTCTGAAGTTACAGCAGAGAAGATCACATCAGGTCT
TATCTCCCTGAGATTACAGTGGAACAGACCAAAGAAATAAGGACGTATCTCCCTAAAGTTACAGC
GGAGCAGACAGAAGACAG
Found at i:10557757 original size:86 final size:86
Alignment explanation
Indices: 10557566--10557838 Score: 361
Period size: 86 Copynumber: 3.2 Consensus size: 86
10557556 GGTTGTGACA
* ** * * *
10557566 GAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACAAA
1 GAGCTGGTTAAAGA-AGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAA-A-ACAAA
*
10557631 -CCTTGCCTCTC-TCGGTTGAAGTG
63 GCCTTGCCTC-CATCGGTTGCAGTG
*
10557654 GAGCTGGTTAAAGAAGCAGATCTTGCCTTCCTACATTAACAGCGAAGCAGATCGAAAACAAAGCC
1 GAGCTGGTTAAAGAAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCC
* *
10557719 TTGCATCCATCGATTGCAGTG
66 TTGCCTCCATCGGTTGCAGTG
* * **
10557740 GAGCTAGTTAAAGAAGCAGATCTTGCCTTCCTGCATTAACAGCAAAGCAGATAAAAAACAAAGCC
1 GAGCTGGTTAAAGAAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCC
*
10557805 TTGCCTCCATCGGTTGCATTG
66 TTGCCTCCATCGGTTGCAGTG
10557826 GAGCTGGTTAAAG
1 GAGCTGGTTAAAG
10557839 GTTACAGATT
Statistics
Matches: 164, Mismatches: 19, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
85 6 0.04
86 109 0.66
87 36 0.22
88 13 0.08
ACGTcount: A:0.31, C:0.22, G:0.23, T:0.23
Consensus pattern (86 bp):
GAGCTGGTTAAAGAAGCAGATCTTGCCTTCCTGCATTAACAGCGAAGCAGATCGAAAACAAAGCC
TTGCCTCCATCGGTTGCAGTG
Found at i:10558083 original size:43 final size:44
Alignment explanation
Indices: 10557983--10558088 Score: 119
Period size: 44 Copynumber: 2.4 Consensus size: 44
10557973 GATCTTGTCC
* *
10557983 CCCTGAAGTTACAGTGGAGCAGATTGAAGCCAGAGACCTTATCT
1 CCCTGAAGTTACAGTGGAGCAGATCGAAGACAGAGACCTTATCT
* * * *
10558027 CCCCG-AGATTACAGCGGAGCAGATCGAAGACACTA-TCC-TATCT
1 CCCTGAAG-TTACAGTGGAGCAGATCGAAGACA-GAGACCTTATCT
10558070 CCCTGAAGTTACAGTGGAG
1 CCCTGAAGTTACAGTGGAG
10558089 TGGGTTAAAA
Statistics
Matches: 51, Mismatches: 8, Indels: 7
0.77 0.12 0.11
Matches are distributed among these distances:
43 21 0.41
44 29 0.57
45 1 0.02
ACGTcount: A:0.29, C:0.25, G:0.25, T:0.21
Consensus pattern (44 bp):
CCCTGAAGTTACAGTGGAGCAGATCGAAGACAGAGACCTTATCT
Found at i:10558648 original size:20 final size:20
Alignment explanation
Indices: 10558623--10558662 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
10558613 CATGACGGAA
10558623 GCAGC-AACAGAAACAGAAAC
1 GCAGCAAACAGAAACA-AAAC
*
10558643 GCAGCAAACAGTAACAAAAC
1 GCAGCAAACAGAAACAAAAC
10558663 AACAATAGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 9 0.50
ACGTcount: A:0.55, C:0.25, G:0.17, T:0.03
Consensus pattern (20 bp):
GCAGCAAACAGAAACAAAAC
Found at i:10561263 original size:35 final size:35
Alignment explanation
Indices: 10561224--10561324 Score: 148
Period size: 35 Copynumber: 2.9 Consensus size: 35
10561214 TATAAATCAT
* *
10561224 TATTTTACGTGAATTAAACGTATTTGTCTCATTAC
1 TATTTTATGTGAATTAAGCGTATTTGTCTCATTAC
*
10561259 TATTTTATGTGAATTAAGCGTATTTCTCTCATTAC
1 TATTTTATGTGAATTAAGCGTATTTGTCTCATTAC
** *
10561294 TATTTTATGTGAAACAAGCGAATTTGTCTCA
1 TATTTTATGTGAATTAAGCGTATTTGTCTCA
10561325 CTTTTTAAGT
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 59 1.00
ACGTcount: A:0.29, C:0.14, G:0.13, T:0.45
Consensus pattern (35 bp):
TATTTTATGTGAATTAAGCGTATTTGTCTCATTAC
Found at i:10566773 original size:23 final size:23
Alignment explanation
Indices: 10566746--10566791 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
10566736 ACATCTTAAA
10566746 AATATTTTTATTTTTTTTAGCTT
1 AATATTTTTATTTTTTTTAGCTT
10566769 AATATTTTTATTTTTTTTAGCTT
1 AATATTTTTATTTTTTTTAGCTT
10566792 TCCCACCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.22, C:0.04, G:0.04, T:0.70
Consensus pattern (23 bp):
AATATTTTTATTTTTTTTAGCTT
Found at i:10571325 original size:24 final size:24
Alignment explanation
Indices: 10571288--10571333 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
10571278 GCAATTCATT
10571288 TCGATGGTGTTATTTTAGAAACAA
1 TCGATGGTGTTATTTTAGAAACAA
*
10571312 TCGATGGT-TGTATTTTTGAAAC
1 TCGATGGTGT-TATTTTAGAAAC
10571334 TCGTTAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 1 0.05
24 19 0.95
ACGTcount: A:0.28, C:0.09, G:0.22, T:0.41
Consensus pattern (24 bp):
TCGATGGTGTTATTTTAGAAACAA
Found at i:10580045 original size:6 final size:6
Alignment explanation
Indices: 10579949--10580042 Score: 122
Period size: 6 Copynumber: 16.2 Consensus size: 6
10579939 ATGTGAGGTA
10579949 AGTATT AGTATT AGTATT AGTATT AGTATT AGTATT AGTATT AGTATT
1 AGTATT AGTATT AGTATT AGTATT AGTATT AGTATT AGTATT AGTATT
* * * * *
10579997 AGTA-T --TATT AGTATT ATTATT ATTATT ATTATT ATTATT ATTATT
1 AGTATT AGTATT AGTATT AGTATT AGTATT AGTATT AGTATT AGTATT
10580042 A
1 A
10580043 TTAAGATGAG
Statistics
Matches: 84, Mismatches: 1, Indels: 6
0.92 0.01 0.07
Matches are distributed among these distances:
3 2 0.02
4 1 0.01
5 1 0.01
6 80 0.95
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (6 bp):
AGTATT
Found at i:10583312 original size:35 final size:35
Alignment explanation
Indices: 10583246--10583341 Score: 90
Period size: 35 Copynumber: 2.7 Consensus size: 35
10583236 TCATGGTGTC
10583246 GCTCCGTAGAGCCAATAGATCATTTCTATAATACT
1 GCTCCGTAGAGCCAATAGATCATTTCTATAATACT
* * *
10583281 GCTCTGTAGAGCCAGTA-AGTCATTT-TCATAAT-GT
1 GCTCCGTAGAGCCAATAGA-TCATTTCT-ATAATACT
* * *
10583315 CGCTCCATAGAACCAGTAGATCATTTC
1 -GCTCCGTAGAGCCAATAGATCATTTC
10583342 CAATCAAACC
Statistics
Matches: 50, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
34 3 0.06
35 46 0.92
36 1 0.02
ACGTcount: A:0.29, C:0.23, G:0.17, T:0.31
Consensus pattern (35 bp):
GCTCCGTAGAGCCAATAGATCATTTCTATAATACT
Found at i:10584416 original size:41 final size:41
Alignment explanation
Indices: 10584333--10584438 Score: 133
Period size: 41 Copynumber: 2.5 Consensus size: 41
10584323 CCAAGATAAA
* * *
10584333 TATACTGGCATGTAAATGCATCATTGGATGAACCAAAGTAAT
1 TATACT-GCATGTAAGTGCATCAGTCGATGAACCAAAGTAAT
*
10584375 TATACTAGCATGTAAGTGCATC-GTCGATGAACCGAAGTAAT
1 TATACT-GCATGTAAGTGCATCAGTCGATGAACCAAAGTAAT
*
10584416 TATACTGCCACGTAAGTGCATCA
1 TATACTG-CATGTAAGTGCATCA
10584439 TCAGATAAAT
Statistics
Matches: 56, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
40 1 0.02
41 35 0.62
42 20 0.36
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (41 bp):
TATACTGCATGTAAGTGCATCAGTCGATGAACCAAAGTAAT
Found at i:10584495 original size:42 final size:42
Alignment explanation
Indices: 10584262--10584498 Score: 172
Period size: 42 Copynumber: 5.7 Consensus size: 42
10584252 GTTGACACGA
** * * * * *
10584262 AAGTGCATCATCAAATGAACCAAAGCAAATACACTAGCACGT
1 AAGTGCATCATCGGATGAACCGAAGCAATTATACTGGCATGT
* * ** * * *
10584304 AAATGCATTATCAAATTAACC-AAGATAAATATACTGGCATGT
1 AAGTGCATCATCGGATGAACCGAAG-CAATTATACTGGCATGT
* * * * *
10584346 AAATGCATCATTGGATGAACCAAAGTAATTATACTAGCATGT
1 AAGTGCATCATCGGATGAACCGAAGCAATTATACTGGCATGT
* * * *
10584388 AAGTGCATCGTC-GATGAACCGAAGTAATTATACTGCCACGT
1 AAGTGCATCATCGGATGAACCGAAGCAATTATACTGGCATGT
* * ** * *
10584429 AAGTGCATCATCAGATAAATTGAAGCAATTGTATTGGCATGT
1 AAGTGCATCATCGGATGAACCGAAGCAATTATACTGGCATGT
* *
10584471 AAGTTCATCATCGGATGAACTGAAGCAA
1 AAGTGCATCATCGGATGAACCGAAGCAA
10584499 GTACATCATC
Statistics
Matches: 158, Mismatches: 34, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
41 39 0.25
42 116 0.73
43 3 0.02
ACGTcount: A:0.40, C:0.17, G:0.18, T:0.25
Consensus pattern (42 bp):
AAGTGCATCATCGGATGAACCGAAGCAATTATACTGGCATGT
Found at i:10584507 original size:26 final size:26
Alignment explanation
Indices: 10584471--10584522 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
10584461 ATTGGCATGT
* *
10584471 AAGTTCATCATCGGATGAACTGAAGC
1 AAGTACATCATCGGATGAACCGAAGC
10584497 AAGTACATCATCGGATGAACCGAAGC
1 AAGTACATCATCGGATGAACCGAAGC
10584523 TAATATACTA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
AAGTACATCATCGGATGAACCGAAGC
Found at i:10584561 original size:42 final size:42
Alignment explanation
Indices: 10584497--10584699 Score: 157
Period size: 42 Copynumber: 4.8 Consensus size: 42
10584487 GAACTGAAGC
* *
10584497 AAGTACATCATCGGATGAACCGAAGCTAATATACTAG-TATGT
1 AAGTGCATCATCGGATGAACCGAAGC-AATATACTAGACATGT
* *
10584539 AAGTGCATCATCGGATGAACCGAAGCAATTATATTGGCACA--T
1 AAGTGCATCATCGGATGAACCGAAGCAA-TATACTAG-ACATGT
* ** *
10584581 AAGTGTATCATTAGATGAACCGAAGCAATTATACTAGCACATCT
1 AAGTGCATCATCGGATGAACCGAAGCAA-TATACTAG-ACATGT
* * * * *
10584625 -AGTGCATTATC-GATGAACTGAAGCAAATATA-TTGAAAAGT
1 AAGTGCATCATCGGATGAACCGAAGC-AATATACTAGACATGT
* * *
10584665 AAGTGCATCACCGGATGAACTGAAGTAAATATACT
1 AAGTGCATCATCGGATGAACCGAAG-CAATATACT
10584700 GGCACGTACT
Statistics
Matches: 131, Mismatches: 20, Indels: 19
0.77 0.12 0.11
Matches are distributed among these distances:
40 3 0.02
41 13 0.10
42 102 0.78
43 11 0.08
44 2 0.02
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (42 bp):
AAGTGCATCATCGGATGAACCGAAGCAATATACTAGACATGT
Found at i:10584598 original size:110 final size:110
Alignment explanation
Indices: 10584400--10584608 Score: 262
Period size: 110 Copynumber: 1.9 Consensus size: 110
10584390 GTGCATCGTC
** *
10584400 GATGAACCGAAGTAATTATACTGCCACGTAAGTGCATCATCAGATAAATTGAAGCAATTGTATTG
1 GATGAACCGAAGTAATTATACTGCCACGTAAGTGCATCATCAGATAAACCGAAGCAATTATATTG
** * *
10584465 GCATGTAAGTTCATCATCGGATGAACTGAAGCAAGTACATCATCG
66 GCACATAAGTTCATCATCAGATGAACCGAAGCAAGTACATCATCG
* * * *
10584510 GATGAACCGAAGCTAA-TATACTAG-TATGTAAGTGCATCATCGGATGAACCGAAGCAATTATAT
1 GATGAACCGAAG-TAATTATACT-GCCACGTAAGTGCATCATCAGATAAACCGAAGCAATTATAT
*
10584573 TGGCACATAAGTGT-ATCATTAGATGAACCGAAGCAA
64 TGGCACATAAGT-TCATCATCAGATGAACCGAAGCAA
10584609 TTATACTAGC
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
110 79 0.94
111 5 0.06
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25
Consensus pattern (110 bp):
GATGAACCGAAGTAATTATACTGCCACGTAAGTGCATCATCAGATAAACCGAAGCAATTATATTG
GCACATAAGTTCATCATCAGATGAACCGAAGCAAGTACATCATCG
Found at i:10584640 original size:152 final size:151
Alignment explanation
Indices: 10584351--10584650 Score: 372
Period size: 152 Copynumber: 2.0 Consensus size: 151
10584341 CATGTAAATG
* * *
10584351 CATCATTGGATGAACCAAAGTAATTATACTAGCATGTAAGTGCATCGTCGATGAACCGAAGTAAT
1 CATCATCGGATGAACCAAAGTAATTATACTAGCATGTAAGTGCATCATCGATGAACCGAAGCAAT
* ** * * * * *
10584416 TATACTGCCACGTAAGTGCATCATCAGATAAATTGAAGCAATTGTATTGGCATGTAAGTTCATCA
66 TATACTGCCACATAAGTGCATCATCAGATAAACCGAAGCAATTATATAGACATCTAAGTGCATCA
10584481 TCGGATGAACTGAAGCAAGTA
131 TCGGATGAACTGAAGCAAGTA
* *
10584502 CATCATCGGATGAACCGAAGCTAA-TATACTAGTATGTAAGTGCATCATCGGATGAACCGAAGCA
1 CATCATCGGATGAACCAAAG-TAATTATACTAGCATGTAAGTGCATCATC-GATGAACCGAAGCA
* * * * *
10584566 ATTATATTGGCACATAAGTGTATCATTAGATGAACCGAAGCAATTATACTAGCACATCT-AGTGC
64 ATTATACTGCCACATAAGTGCATCATCAGATAAACCGAAGCAATTATA-TAG-ACATCTAAGTGC
*
10584630 ATTATC-GATGAACTGAAGCAA
127 ATCATCGGATGAACTGAAGCAA
10584651 ATATATTGAA
Statistics
Matches: 126, Mismatches: 19, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
151 41 0.33
152 70 0.56
153 11 0.09
154 4 0.03
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.26
Consensus pattern (151 bp):
CATCATCGGATGAACCAAAGTAATTATACTAGCATGTAAGTGCATCATCGATGAACCGAAGCAAT
TATACTGCCACATAAGTGCATCATCAGATAAACCGAAGCAATTATATAGACATCTAAGTGCATCA
TCGGATGAACTGAAGCAAGTA
Found at i:10584682 original size:84 final size:85
Alignment explanation
Indices: 10584497--10584704 Score: 210
Period size: 84 Copynumber: 2.5 Consensus size: 85
10584487 GAACTGAAGC
* * *
10584497 AAGTACATCATCGGATGAACCGAAGCTAATATACTAG--TATGTAAGTGCATCATCGGATGAACC
1 AAGTGCATCATCGGATGAACCGAAGC-AATATACTAGCACATCTAAGTGCATCATCGGATGAACC
* * *
10584560 GAAGCAATTATATTGGCACAT
65 GAAGCAAATATATTGGAAAAT
* ** * *
10584581 AAGTGTATCATTAGATGAACCGAAGCAATTATACTAGCACATCT-AGTGCATTATC-GATGAACT
1 AAGTGCATCATCGGATGAACCGAAGCAA-TATACTAGCACATCTAAGTGCATCATCGGATGAACC
10584644 GAAGCAAATATATT-GAAAAGT
65 GAAGCAAATATATTGGAAAA-T
* * * *
10584665 AAGTGCATCACCGGATGAACTGAAGTAAATATACTGGCAC
1 AAGTGCATCATCGGATGAACCGAAG-CAATATACTAGCAC
10584705 GTACTTGCAT
Statistics
Matches: 101, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
83 5 0.05
84 81 0.80
85 12 0.12
86 3 0.03
ACGTcount: A:0.38, C:0.17, G:0.20, T:0.25
Consensus pattern (85 bp):
AAGTGCATCATCGGATGAACCGAAGCAATATACTAGCACATCTAAGTGCATCATCGGATGAACCG
AAGCAAATATATTGGAAAAT
Found at i:10586659 original size:15 final size:13
Alignment explanation
Indices: 10586610--10586660 Score: 57
Period size: 13 Copynumber: 3.7 Consensus size: 13
10586600 GTTGCAATTG
* *
10586610 AAAAGTGCTTTTGT
1 AAAAGTG-TTGTGA
10586624 AAAAGTGTTGTGA
1 AAAAGTGTTGTGA
10586637 AAAAGTGTTGTAGA
1 AAAAGTGTTGT-GA
10586651 AAAATGTGTT
1 AAAA-GTGTT
10586661 ATTCATTGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
13 15 0.45
14 13 0.39
15 5 0.15
ACGTcount: A:0.37, C:0.02, G:0.25, T:0.35
Consensus pattern (13 bp):
AAAAGTGTTGTGA
Found at i:10587776 original size:30 final size:31
Alignment explanation
Indices: 10587739--10587827 Score: 80
Period size: 31 Copynumber: 2.9 Consensus size: 31
10587729 AACTTGTTGT
10587739 TAATATTTTAATATATGAAATATAAATTTTA
1 TAATATTTTAATATATGAAATATAAATTTTA
* * *
10587770 -AATATTTTTAAGAAAT-AAATATTAATTATTTA
1 TAATA-TTTTAATATATGAAATA-TAAAT-TTTA
10587802 TAA-ATTTTAAT-TA-GAATATATAAATT
1 TAATATTTTAATATATGAA-ATATAAATT
10587828 ATATTTTAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 14
0.70 0.09 0.21
Matches are distributed among these distances:
29 1 0.02
30 16 0.35
31 22 0.48
32 5 0.11
33 2 0.04
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.47
Consensus pattern (31 bp):
TAATATTTTAATATATGAAATATAAATTTTA
Found at i:10596141 original size:79 final size:81
Alignment explanation
Indices: 10596010--10596177 Score: 286
Period size: 79 Copynumber: 2.1 Consensus size: 81
10596000 GTTGAGTTGA
10596010 AACACTCTAGTAAATTGTATTTTATCAGGATAGTTATTGTAAAATCCTAAAGGAT-AA-ATATAT
1 AACACTCTAGTAAATTGTATTTTATCAGGATAGTTATTGTAAAATCCTAAAGGATAAACATATAT
*
10596073 ATAATTTAAATCCCTT
66 AGAATTTAAATCCCTT
* *
10596089 AACACTGTAGTAAATTGTATTTTATCAGGATGGTTATTGTAAAATCCTAAAGGATAAACATATAT
1 AACACTCTAGTAAATTGTATTTTATCAGGATAGTTATTGTAAAATCCTAAAGGATAAACATATAT
10596154 AGAATTTAAATCCCTT
66 AGAATTTAAATCCCTT
*
10596170 AAGACTCT
1 AACACTCT
10596178 CTTAATGTAG
Statistics
Matches: 82, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
79 53 0.65
80 2 0.02
81 27 0.33
ACGTcount: A:0.40, C:0.12, G:0.12, T:0.36
Consensus pattern (81 bp):
AACACTCTAGTAAATTGTATTTTATCAGGATAGTTATTGTAAAATCCTAAAGGATAAACATATAT
AGAATTTAAATCCCTT
Found at i:10599257 original size:92 final size:92
Alignment explanation
Indices: 10599100--10599281 Score: 355
Period size: 92 Copynumber: 2.0 Consensus size: 92
10599090 AGAAGGAGAA
10599100 GAAGAAAATGAAAATTTCAAAAAAAATTTGGGTTTAAATAACCCTCTCAAAACAGTGCCGTTTTA
1 GAAGAAAATGAAAATTTCAAAAAAAATTTGGGTTTAAATAACCCTCTCAAAACAGTGCCGTTTTA
*
10599165 CCCTTGGGGGTCAGGTGCCAAAACGGC
66 CCCTTGGGGGTCAAGTGCCAAAACGGC
10599192 GAAGAAAATGAAAATTTCAAAAAAAATTTGGGTTTAAATAACCCTCTCAAAACAGTGCCGTTTTA
1 GAAGAAAATGAAAATTTCAAAAAAAATTTGGGTTTAAATAACCCTCTCAAAACAGTGCCGTTTTA
10599257 CCCTTGGGGGTCAAGTGCCAAAACG
66 CCCTTGGGGGTCAAGTGCCAAAACG
10599282 ACGCCGTTTT
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
92 89 1.00
ACGTcount: A:0.38, C:0.18, G:0.20, T:0.24
Consensus pattern (92 bp):
GAAGAAAATGAAAATTTCAAAAAAAATTTGGGTTTAAATAACCCTCTCAAAACAGTGCCGTTTTA
CCCTTGGGGGTCAAGTGCCAAAACGGC
Found at i:10599654 original size:3 final size:3
Alignment explanation
Indices: 10599646--10599740 Score: 68
Period size: 3 Copynumber: 31.7 Consensus size: 3
10599636 TATTGTTTAC
* * **
10599646 ATT ATT ATT TTT AAT ATT ACC ATT ATT ATT ATT AATT -TT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT ATT
* * * * * *
10599691 ATC ATCT -TT ATT ATT ATT ATT AAT ACT ATT GTT GTT ATT ATT ATC
1 ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
10599736 ATT AT
1 ATT AT
10599741 ATTCCCATTT
Statistics
Matches: 71, Mismatches: 17, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
2 3 0.04
3 65 0.92
4 3 0.04
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:10599871 original size:20 final size:20
Alignment explanation
Indices: 10599843--10599884 Score: 50
Period size: 20 Copynumber: 2.1 Consensus size: 20
10599833 AATTTATTTA
*
10599843 ATATATA-TTACTTTATATAT
1 ATATATATTTA-TTTACATAT
*
10599863 ATATTTATTTATTTACATAT
1 ATATATATTTATTTACATAT
10599883 AT
1 AT
10599885 CTATGTACTC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 16 0.84
21 3 0.16
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (20 bp):
ATATATATTTATTTACATAT
Found at i:10599873 original size:16 final size:16
Alignment explanation
Indices: 10599829--10599874 Score: 62
Period size: 16 Copynumber: 3.0 Consensus size: 16
10599819 TATGTATCTC
10599829 ATATA-ATTTATTTA-
1 ATATATATTTATTTAT
10599843 ATATATA-TTACTTTAT
1 ATATATATTTA-TTTAT
10599859 ATATATATTTATTTAT
1 ATATATATTTATTTAT
10599875 TTACATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
14 8 0.29
15 5 0.18
16 12 0.43
17 3 0.11
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (16 bp):
ATATATATTTATTTAT
Found at i:10599882 original size:16 final size:17
Alignment explanation
Indices: 10599829--10599884 Score: 60
Period size: 16 Copynumber: 3.2 Consensus size: 17
10599819 TATGTATCTC
*
10599829 ATATAATTTATTTAATAT
1 ATATTATTTATTT-ATAT
*
10599847 ATATTACTTTATATATAT
1 ATATTA-TTTATTTATAT
*
10599865 AT-TTATTTATTTACAT
1 ATATTATTTATTTATAT
10599881 ATAT
1 ATAT
10599885 CTATGTACTC
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
16 11 0.34
17 4 0.12
18 11 0.34
19 6 0.19
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (17 bp):
ATATTATTTATTTATAT
Found at i:10600588 original size:107 final size:108
Alignment explanation
Indices: 10600203--10600735 Score: 781
Period size: 108 Copynumber: 5.0 Consensus size: 108
10600193 TTTCTAATTG
* *
10600203 AGGCAATATTTTGCGTTTGGAAATTCGAGAAAATGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
*
10600268 CGTCCAACCAAATGGCTTAATATCCTTTTAAAATTTTAAAATA
66 CGTCCAACCAAATGGCTTAATATCCTTTTAAAATTTCAAAATA
* *
10600311 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGACTTTCCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
10600376 CGTCCAACCAAATGGCTTAATATCCTTTTAAAAGTTT-AAAATA
66 CGTCCAACCAAATGGCTTAATATCCTTTTAAAA-TTTCAAAATA
10600419 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
10600484 CGTCCAACCAAATGGCTTAATATCCTTTTAAAATTTCAAAATA
66 CGTCCAACCAAATGGCTTAATATCCTTTTAAAATTTCAAAATA
* *
10600527 AGGCAATG-TTTGCGTTTGGAAATTTGAGAAAACGTGCCCTAAGGTGCTGGGTGTTGATTTTTCT
1 AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
* * * * * **
10600591 CGTTCAACCAAATAGCTAAATAGCCTTTCAAAAATTTCAAAGCA
66 CGTCCAACCAAATGGCTTAATATCCTTT-TAAAATTTCAAAATA
* * * *
10600635 AGGTAATGTTTTACGTTTGGGAAATTCGAG-GAACGTGCCCTAAGGTGCTGGGTTTCGA--TTTC
1 AGGCAATGTTTTGCGTTT-GGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTC
** * ** *
10600697 TCGTTTAACCAAATTGCCAAATATCCTTTT-GAATTTCAA
65 TCGTCCAACCAAATGGCTTAATATCCTTTTAAAATTTCAA
10600736 TCCATACTAT
Statistics
Matches: 393, Mismatches: 27, Indels: 13
0.91 0.06 0.03
Matches are distributed among these distances:
105 8 0.02
107 110 0.28
108 229 0.58
109 36 0.09
110 10 0.03
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33
Consensus pattern (108 bp):
AGGCAATGTTTTGCGTTTGGAAATTCGAGAAAACGTGCCCTAAGGTGCTGGGTGTCGATTTTTCT
CGTCCAACCAAATGGCTTAATATCCTTTTAAAATTTCAAAATA
Found at i:10612455 original size:45 final size:45
Alignment explanation
Indices: 10612401--10612650 Score: 263
Period size: 45 Copynumber: 5.3 Consensus size: 45
10612391 GCAGTGGAAC
10612401 AGATTGAAGCTACAACAGCGGATCTTGCTTCCCTGGCAGTTAAAA
1 AGATTGAAGCTACAACAGCGGATCTTGCTTCCCTGGCAGTTAAAA
* * * *
10612446 AGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACA
1 AGATTGAAGCTACAACAGCGGATCTTGC-TTCC---C-TGGCAGT-TAAAA
* *
10612497 A-ATTGAAGCTACAACAGCGGATCTTGCTTCCCAGGTAGTTAAAA
1 AGATTGAAGCTACAACAGCGGATCTTGCTTCCCTGGCAGTTAAAA
* * * * *
10612541 AGATTGAAGCTACAACAGCGAATCTTACTTTCCTAGTGTTGCAGTGGAACA
1 AGATTGAAGCTACAACAGCGGATCTTGC-TTCC--CTG--GCAGT-TAAAA
10612592 A-ATTGAAGCTACAACAGCGGATCTTGCTTCCCCT-GCAGTTAAAA
1 AGATTGAAGCTACAACAGCGGATCTTGCTT-CCCTGGCAGTTAAAA
10612636 AGATTGAAGCTACAA
1 AGATTGAAGCTACAA
10612651 TGGCGAATCT
Statistics
Matches: 168, Mismatches: 22, Indels: 30
0.76 0.10 0.14
Matches are distributed among these distances:
44 8 0.05
45 73 0.43
46 9 0.05
48 2 0.01
49 7 0.04
50 61 0.36
51 8 0.05
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.25
Consensus pattern (45 bp):
AGATTGAAGCTACAACAGCGGATCTTGCTTCCCTGGCAGTTAAAA
Found at i:10612512 original size:95 final size:95
Alignment explanation
Indices: 10612349--10612716 Score: 540
Period size: 95 Copynumber: 3.9 Consensus size: 95
10612339 ATTGCAATTC
* * * * *
10612349 AAAGATTGAAGCCATAACGGCGAATCTTACTTTCCTAGTGTTGCAGTGGAACAGATTGAAGCTAC
1 AAAGATTGAAGCTACAACAGCGAATCTTACTTTCCTAGCGTTGCAGTGGAACAAATTGAAGCTAC
10612414 AACAGCGGATCTTGCTTCCCTGGCAGTTAA
66 AACAGCGGATCTTGCTTCCCTGGCAGTTAA
*
10612444 AAAGATTGAAGCTACAACAGCGGATCTTACTTTCCTAGCGTTGCAGTGGAACAAATTGAAGCTAC
1 AAAGATTGAAGCTACAACAGCGAATCTTACTTTCCTAGCGTTGCAGTGGAACAAATTGAAGCTAC
* *
10612509 AACAGCGGATCTTGCTTCCCAGGTAGTTAA
66 AACAGCGGATCTTGCTTCCCTGGCAGTTAA
*
10612539 AAAGATTGAAGCTACAACAGCGAATCTTACTTTCCTAGTGTTGCAGTGGAACAAATTGAAGCTAC
1 AAAGATTGAAGCTACAACAGCGAATCTTACTTTCCTAGCGTTGCAGTGGAACAAATTGAAGCTAC
10612604 AACAGCGGATCTTGCTTCCCCT-GCAGTTAA
66 AACAGCGGATCTTGCTT-CCCTGGCAGTTAA
** * * * * *
10612634 AAAGATTGAAGCTACAATGGCGAATCTTACTTTCTCTAGCGGTGCGGTAGAACAGATTGGAGCTA
1 AAAGATTGAAGCTACAACAGCGAATCTTACTTTC-CTAGCGTTGCAGTGGAACAAATTGAAGCTA
* * *
10612699 CAATAGCGAATTTTGCTT
65 CAACAGCGGATCTTGCTT
10612717 TCTCGACTTT
Statistics
Matches: 248, Mismatches: 23, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
95 206 0.83
96 42 0.17
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (95 bp):
AAAGATTGAAGCTACAACAGCGAATCTTACTTTCCTAGCGTTGCAGTGGAACAAATTGAAGCTAC
AACAGCGGATCTTGCTTCCCTGGCAGTTAA
Found at i:10614144 original size:3 final size:3
Alignment explanation
Indices: 10614136--10614236 Score: 80
Period size: 3 Copynumber: 33.7 Consensus size: 3
10614126 TATTGTTTAC
* * **
10614136 ATT ATT ATT TTT AAT ATT ACC ATT ATT ATT ATT ATT AATT -TT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT -ATT ATT ATT
* * * * *
10614181 ATT ATC ATCT -TT ATT ATT ATT ATT ATT AAT ACT ATT GTT GTT ATT
1 ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
10614226 ATT ATC ATT AT
1 ATT ATT ATT AT
10614237 ATTCCCATTT
Statistics
Matches: 77, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
2 3 0.04
3 71 0.92
4 3 0.04
ACGTcount: A:0.32, C:0.06, G:0.02, T:0.60
Consensus pattern (3 bp):
ATT
Found at i:10614360 original size:18 final size:17
Alignment explanation
Indices: 10614325--10614380 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 17
10614315 TATGTATCTC
10614325 ATATA-ATTTATTTAAT
1 ATATATATTTATTTAAT
10614341 ATATATA-TTACTTTATAT
1 ATATATATTTA-TTTA-AT
*
10614359 ATATTTATTTATTTACAT
1 ATATATATTTATTTA-AT
10614377 ATAT
1 ATAT
10614381 CTATGTACTC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
16 8 0.24
17 5 0.15
18 18 0.53
19 3 0.09
ACGTcount: A:0.39, C:0.04, G:0.00, T:0.57
Consensus pattern (17 bp):
ATATATATTTATTTAAT
Done.